Citrus Sinensis ID: 044097

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
MALSLSSSPLLLTPDLNRSDSLSRLSYPTPRLRVSDKQCSIKTIRLSRTHINPTAHNDRQPLHLHYKLPLQLASSSVLLFLGFGARICSAGPTQLPLTPAVNQQDQLLDQDTEQKEDEKLNQEFENWKWKTYALTVPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKGKPSVDTNLIAGVPPR
ccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHcccccHHHHHHHHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHHHccEEEEEccccccccccccccccccccHHHHHHHHHHccHHHHcccccccccccHHHHHHHHcccccccccccccccEEEccccEEEEccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHccEEEEEEEcccHHHHHHHcccccEEEcccccHHHHHHcEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHccccHHHHccccccccccccccccc
cccEcccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccHHEcccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHHHHHcccEEEEEEEEEEccccccEEEEEcHHHHHHHHHHcccccccHHHcccHHHHccHHHHHHHHHHHccccccccccEEEEEEEEEEEEEEcHHHHHHccccccccHHHHHcHHHHccEEEEccHHHHHHHHHccccccHHHHcccccEEEEcHHHHHHHHcccEEEEEEEccHHHHHHHHcccccEEEccccccEHHHcEEcccccHcHHHHcccccccccHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHcHHccccHHHHcccccccHHHccccccc
malslssspllltpdlnrsdslsrlsyptprlrvsdkqcsiktirlsrthinptahndrqplhlhyklplqlASSSVLLFLGFGaricsagptqlpltpavnqqdqlldqdTEQKEDEKLNQEFENWKWKTYALTVPLRVVSlqnsvpqsWVKDFMRSQGKRLKFQMNLCASIDGIvnnlstpfnKLSFAIKKRFiepiaeaedQDWFKRLSHKWKVYlrsndageidprgkiwaapyrwgtmaigykkskfqnhnlapiedwkdpwwpelagrismvnspreviVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAipaasrletkqiggqvrgpspliHQWIEFCLQTAralpfkqevipgaspsaLESTLVKLPeellkgkpsvdtnliagvppr
malslssspllltpdlnrsdslsrlsyptprlrvsdkqcsiktirlsrthinptahndrqPLHLHYKLPLQLASSSVLLFLGFGARICSAGPTQLPLTPAVNQQDQLLDQDTEQKEDEKLNQEFENWKWKTYALTVPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCASIDGIVNNLSTPFNKLSFAIKKRFIepiaeaedqdwfKRLSHKWKVYLrsndageidprgkiWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPeellkgkpsvdtnliagvppr
MAlslsssplllTPdlnrsdslsrlsYPTPRLRVSDKQCSIKTIRLSRTHINPTAHNDRQPLHLHYKLPLQLASSSVLLFLGFGARICSAGPTQLPLTPAVNqqdqlldqdteqkedeklNQEFENWKWKTYALTVPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKGKPSVDTNLIAGVPPR
**************************************CSIKTIRLSRTHINPTAHNDRQPLHLHYKLPLQLASSSVLLFLGFGARICSAGPTQL***************************EFENWKWKTYALTVPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVI*************************************
**************DLNRSDSLSRLSYPTPRLRVSD****************************HYKLPLQLASSSVLLFLGFGARICS******************************LNQEFENWKWKTYALTVPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKGKPSVDTNLIAGVPP*
MALSLSSSPLLLTPDLNRSDSLSRLSYPTPRLRVSDKQCSIKTIRLSRTHINPTAHNDRQPLHLHYKLPLQLASSSVLLFLGFGARICSAGPTQLPLTPAVNQQDQLLDQDTEQKEDEKLNQEFENWKWKTYALTVPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKGKPSVDTNLIAGVPPR
**************DLNRSDSLSRLSYPTPRLRVSDKQCSIKTIRLSRTHIN****NDRQPL*LHYKLPLQLASSSVLLFLGFGARICSAGPTQLPLTPAVNQQDQLLDQDTEQKEDEKLNQEFENWKWKTYALTVPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKGKPSVDTNLIAGVPPR
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SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALSLSSSPLLLTPDLNRSDSLSRLSYPTPRLRVSDKQCSIKTIRLSRTHINPTAHNDRQPLHLHYKLPLQLASSSVLLFLGFGARICSAGPTQLPLTPAVNQQDQLLDQDTEQKEDEKLNQEFENWKWKTYALTVPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKGKPSVDTNLIAGVPPR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query439 2.2.26 [Sep-21-2011]
P31133370 Putrescine-binding peripl N/A no 0.309 0.367 0.296 7e-09
P44731350 Spermidine/putrescine-bin yes no 0.519 0.651 0.254 7e-08
P45168360 Spermidine/putrescine-bin no no 0.412 0.502 0.258 1e-06
P0AFL0348 Spermidine/putrescine-bin no no 0.305 0.385 0.269 8e-05
P0AFK9348 Spermidine/putrescine-bin N/A no 0.305 0.385 0.269 8e-05
P0A2C7348 Spermidine/putrescine-bin no no 0.305 0.385 0.263 0.0001
P0A2C8348 Spermidine/putrescine-bin N/A no 0.305 0.385 0.263 0.0001
>sp|P31133|POTF_ECOLI Putrescine-binding periplasmic protein OS=Escherichia coli (strain K12) GN=potF PE=1 SV=3 Back     alignment and function desciption
 Score = 62.4 bits (150), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 29/165 (17%)

Query: 228 DPRGKIWAAPYRWGTMAIGYKKSKFQN--HNLAPIEDWKDPWWPELAGR-----ISMVNS 280
           DP  K +A PY W T  IGY   K +      AP++ W     PE   +     +S +++
Sbjct: 124 DPDNK-FAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDA 182

Query: 281 PREVIV--------------AGGKIAVQQNLAL-LANQVRLFDSTHYLKAFGIGDVWVAV 325
           P EV                A        +L L L   +R F S+ Y+     GD+ VA+
Sbjct: 183 PEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAI 242

Query: 326 GWSSDVLPAVKRMS------NVAVVVPKSGASLWADLWAIPAASR 364
           GW+ DV  A  R        NV+  +PK GA  + D++A+PA ++
Sbjct: 243 GWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAK 287
Required for the activity of the bacterial periplasmic transport system of putrescine. Polyamine binding protein.
Escherichia coli (strain K12) (taxid: 83333)
>sp|P44731|POTD2_HAEIN Spermidine/putrescine-binding periplasmic protein 2 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=potD-A PE=3 SV=2 Back     alignment and function description
>sp|P45168|POTD1_HAEIN Spermidine/putrescine-binding periplasmic protein 1 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=potD-B PE=3 SV=1 Back     alignment and function description
>sp|P0AFL0|POTD_SHIFL Spermidine/putrescine-binding periplasmic protein OS=Shigella flexneri GN=potD PE=3 SV=1 Back     alignment and function description
>sp|P0AFK9|POTD_ECOLI Spermidine/putrescine-binding periplasmic protein OS=Escherichia coli (strain K12) GN=potD PE=1 SV=1 Back     alignment and function description
>sp|P0A2C7|POTD_SALTY Spermidine/putrescine-binding periplasmic protein OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=potD PE=3 SV=1 Back     alignment and function description
>sp|P0A2C8|POTD_SALTI Spermidine/putrescine-binding periplasmic protein OS=Salmonella typhi GN=potD PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
225427562 553 PREDICTED: uncharacterized protein LOC10 0.984 0.781 0.537 1e-133
224074577424 predicted protein [Populus trichocarpa] 0.735 0.761 0.650 1e-132
449455671 549 PREDICTED: uncharacterized protein LOC10 0.840 0.672 0.574 1e-131
356559069 552 PREDICTED: uncharacterized protein LOC10 0.833 0.663 0.577 1e-131
147822062 875 hypothetical protein VITISV_021806 [Viti 0.840 0.421 0.559 1e-130
255557729507 transporter, putative [Ricinus communis] 0.829 0.717 0.585 1e-129
357517389 786 RING-H2 finger protein ATL5F [Medicago t 0.883 0.493 0.545 1e-128
356560607508 PREDICTED: uncharacterized protein LOC10 0.872 0.753 0.552 1e-125
297846532522 hypothetical protein ARALYDRAFT_473635 [ 0.829 0.697 0.538 1e-118
30692516524 putrescine-binding periplasmic protein-l 0.831 0.696 0.531 1e-117
>gi|225427562|ref|XP_002266662.1| PREDICTED: uncharacterized protein LOC100242504 [Vitis vinifera] gi|296085502|emb|CBI29234.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 261/486 (53%), Positives = 315/486 (64%), Gaps = 54/486 (11%)

Query: 7   SSPLLLTPDLNRSDSLSRLSYPTPRLRVSDKQCSIKTIRLSRTHINPTAHNDRQPLHLHY 66
           S PL  + DL  + +L  L + + R  ++    S    R       PT+     P     
Sbjct: 11  SHPLHRSQDLKPNPNLPFLQHRSLRFSLNFSCVSGPRYRPPCLPALPTSGVSPPPPEQPS 70

Query: 67  KLP---LQLASSSVLLFLGFGARICSAGPTQLPLTPAVN----QQDQLLD-------QDT 112
           +LP   LQ+AS S +LFLGF  R CSA   + P   A      Q+ ++ D       +DT
Sbjct: 71  RLPPDLLQIASVSAILFLGFSVRACSATSGRFPAVVAAECRTVQEQRIQDSDGVGKSEDT 130

Query: 113 EQKEDEKLNQEFENWKWKTYALTVPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCAS 172
           E  ED++L + F+ WK K YALTVPLR+V+L+ S+P SWVKDFM+SQG+RL+   N   S
Sbjct: 131 ENLEDKELKEAFKRWKSKPYALTVPLRIVTLRGSLPPSWVKDFMQSQGRRLRLLSNFRGS 190

Query: 173 IDGIVNNLSTPFNK--------------------LSFAIKKRFIEPIAEAEDQDWFKRLS 212
           +  I + L  P +K                    L  AI K  IEPI   EDQDWF+ LS
Sbjct: 191 LQDIFSELCRPLSKGKIEPKSALAADIVTVGDSWLDLAINKGIIEPIQGVEDQDWFRGLS 250

Query: 213 HKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELA 272
           +KWKVYLR N  GE+D  GKIWAAPYRWG+M I YKKSKF+ H LAPIEDW D W PELA
Sbjct: 251 YKWKVYLRRNSKGELDAEGKIWAAPYRWGSMVIAYKKSKFEKHKLAPIEDWADLWRPELA 310

Query: 273 GRISMVNSPREVI-------------------VAGGKIAVQQNLALLANQVRLFDSTHYL 313
           GRISM++SPREV+                   V GG+ AVQQNL LLA QVR FDSTHY+
Sbjct: 311 GRISMIDSPREVVGAVLKYMGASYNTDNIELQVNGGRNAVQQNLMLLAKQVRCFDSTHYI 370

Query: 314 KAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLE-TKQIGG 372
           KA  +GDVWVAVGWSSDVLPA KRMSNVAV+VPKSGASLWADLWAIP+ S+LE ++QIGG
Sbjct: 371 KALSVGDVWVAVGWSSDVLPAAKRMSNVAVIVPKSGASLWADLWAIPSTSKLERSRQIGG 430

Query: 373 QVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKGKPSVDTNL 432
           +VRGPSP+IHQWIEFCLQ ARA PF +EVIPGASPSA+E   V+ P EL KGKP ++TNL
Sbjct: 431 RVRGPSPVIHQWIEFCLQAARAFPFTEEVIPGASPSAIECASVEAPRELTKGKPKLETNL 490

Query: 433 IAGVPP 438
           IAG+PP
Sbjct: 491 IAGMPP 496

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224074577|ref|XP_002304393.1| predicted protein [Populus trichocarpa] gi|222841825|gb|EEE79372.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449455671|ref|XP_004145575.1| PREDICTED: uncharacterized protein LOC101211357 [Cucumis sativus] gi|449485058|ref|XP_004157059.1| PREDICTED: uncharacterized protein LOC101230567 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356559069|ref|XP_003547824.1| PREDICTED: uncharacterized protein LOC100781794 [Glycine max] Back     alignment and taxonomy information
>gi|147822062|emb|CAN68081.1| hypothetical protein VITISV_021806 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255557729|ref|XP_002519894.1| transporter, putative [Ricinus communis] gi|223540940|gb|EEF42498.1| transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357517389|ref|XP_003628983.1| RING-H2 finger protein ATL5F [Medicago truncatula] gi|355523005|gb|AET03459.1| RING-H2 finger protein ATL5F [Medicago truncatula] Back     alignment and taxonomy information
>gi|356560607|ref|XP_003548582.1| PREDICTED: uncharacterized protein LOC100809061 [Glycine max] Back     alignment and taxonomy information
>gi|297846532|ref|XP_002891147.1| hypothetical protein ARALYDRAFT_473635 [Arabidopsis lyrata subsp. lyrata] gi|297336989|gb|EFH67406.1| hypothetical protein ARALYDRAFT_473635 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30692516|ref|NP_174426.2| putrescine-binding periplasmic protein-like protein [Arabidopsis thaliana] gi|51536594|gb|AAU05535.1| At1g31410 [Arabidopsis thaliana] gi|332193231|gb|AEE31352.1| putrescine-binding periplasmic protein-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query439
TAIR|locus:2206194524 AT1G31410 [Arabidopsis thalian 0.348 0.291 0.683 1.9e-110
TIGR_CMR|BA_1300345 BA_1300 "spermidine/putrescine 0.298 0.379 0.315 3.4e-09
UNIPROTKB|P31133370 potF "putrescine ABC transport 0.154 0.183 0.351 3.5e-07
TIGR_CMR|SO_1270367 SO_1270 "polyamine ABC transpo 0.223 0.267 0.327 2.3e-06
UNIPROTKB|Q9KS37345 VC1424 "Spermidine/putrescine 0.587 0.747 0.203 1.4e-05
TIGR_CMR|VC_1424345 VC_1424 "spermidine/putrescine 0.587 0.747 0.203 1.4e-05
TIGR_CMR|CPS_0103369 CPS_0103 "putrescine ABC trans 0.145 0.173 0.371 1.9e-05
UNIPROTKB|Q9KKJ4343 VCA1113 "Spermidine/putrescine 0.410 0.524 0.246 5e-05
TIGR_CMR|VC_A1113343 VC_A1113 "spermidine/putrescin 0.410 0.524 0.246 5e-05
UNIPROTKB|P0AFK9348 potD "putrescine / spermidine 0.302 0.382 0.271 0.00014
TAIR|locus:2206194 AT1G31410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 562 (202.9 bits), Expect = 1.9e-110, Sum P(3) = 1.9e-110
 Identities = 106/155 (68%), Positives = 126/155 (81%)

Query:   286 VAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVV 345
             V GG++AV++NLA L  Q+RLFDS +YLKAF +GDVWV VGWSSDV+P  KRMSNV V+V
Sbjct:   306 VPGGRLAVEKNLASLMKQIRLFDSNNYLKAFNVGDVWVTVGWSSDVIPVAKRMSNVTVIV 365

Query:   346 PKSGASLWADLWAIPAASRL--ETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIP 403
             PKSGA+LWADLWAIPA S    E +Q GG+VRGPSPLI+QWIEFCLQ AR+LPF +EVIP
Sbjct:   366 PKSGATLWADLWAIPAVSDSGKEAEQRGGRVRGPSPLINQWIEFCLQPARSLPFTREVIP 425

Query:   404 GASPSALESTLVKLPEELLKGKPSVDTNLIAGVPP 438
             GASPSAL+  LV  PE+  K +  +DTNL+ GVPP
Sbjct:   426 GASPSALDGPLVTEPEKTKKDRTKLDTNLVTGVPP 460
GO:0005215 "transporter activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
TIGR_CMR|BA_1300 BA_1300 "spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P31133 potF "putrescine ABC transporter - periplasmic binding protein" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1270 SO_1270 "polyamine ABC transporter, periplasmic polyamine-binding protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KS37 VC1424 "Spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1424 VC_1424 "spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0103 CPS_0103 "putrescine ABC transporter, periplasmic putrescine-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KKJ4 VCA1113 "Spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A1113 VC_A1113 "spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P0AFK9 potD "putrescine / spermidine ABC transporter - periplasmic binding protein" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.III.2099.1
hypothetical protein (412 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
COG0687363 COG0687, PotD, Spermidine/putrescine-binding perip 1e-21
pfam13343239 pfam13343, SBP_bac_6, Bacterial extracellular solu 2e-16
PRK10682370 PRK10682, PRK10682, putrescine transporter subunit 3e-10
pfam13416281 pfam13416, SBP_bac_8, Bacterial extracellular solu 2e-09
PRK09501348 PRK09501, potD, spermidine/putrescine ABC transpor 1e-06
>gnl|CDD|223759 COG0687, PotD, Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism] Back     alignment and domain information 
 Score = 95.2 bits (237), Expect = 1e-21
 Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 44/227 (19%)

Query: 190 AIKKRFIEPIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKK 249
            IK+  ++P+      D  K L +   +     +  + DP G  ++ PY WGT  I Y  
Sbjct: 94  LIKEGLLQPL------DKSK-LPNWKNLDPEFLNPPKFDP-GNKYSVPYFWGTTGIAYNT 145

Query: 250 SKFQNHNLAPIEDWKDPW----WPELAGR-ISMVNSPREVIVA-------GGKIAVQQNL 297
            K ++    P   W D +    +P L G+ +++++  REV  A              ++L
Sbjct: 146 DKVKDA--PPPTSWADLFDPEKFPGLKGKGVALLDDDREVFGAALALLGKSPNTTDPEDL 203

Query: 298 -----ALLA---NQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPA--VKRMSNVAVVVPK 347
                 L       V  FD + Y++    G+V +A+GWS D   A   K  + +  V+PK
Sbjct: 204 KKAFDLLDKLKPVNVYWFDGSQYVQLLANGEVVLAMGWSGDAAAAKAAKNGAPIEFVIPK 263

Query: 348 SGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARA 394
            G+ LW D  AIP  ++                 +++I F L    A
Sbjct: 264 EGSILWFDNLAIPKGAKNV------------DAAYKFINFLLDPEVA 298

Length = 363
>gnl|CDD|222057 pfam13343, SBP_bac_6, Bacterial extracellular solute-binding protein Back     alignment and domain information
>gnl|CDD|182645 PRK10682, PRK10682, putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional Back     alignment and domain information
>gnl|CDD|222114 pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein Back     alignment and domain information
>gnl|CDD|181913 PRK09501, potD, spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 439
COG0687363 PotD Spermidine/putrescine-binding periplasmic pro 100.0
PRK09501348 potD spermidine/putrescine ABC transporter peripla 100.0
PRK10682370 putrescine transporter subunit: periplasmic-bindin 100.0
TIGR03261334 phnS2 putative 2-aminoethylphosphonate ABC transpo 99.95
TIGR03227367 PhnS 2-aminoethylphosphonate ABC transporter, peri 99.95
PRK11622401 hypothetical protein; Provisional 99.93
TIGR01254304 sfuA ABC transporter periplasmic binding protein, 99.93
TIGR01276309 thiB thiamine ABC transporter, periplasmic binding 99.92
PRK11205330 tbpA thiamine transporter substrate binding subuni 99.92
PRK15046349 2-aminoethylphosphonate ABC transporter substrate- 99.91
PF13416281 SBP_bac_8: Bacterial extracellular solute-binding 99.89
PF13343242 SBP_bac_6: Bacterial extracellular solute-binding 99.89
TIGR03850437 bind_CPR_0540 carbohydrate ABC transporter substra 99.87
COG4143336 TbpA ABC-type thiamine transport system, periplasm 99.85
PRK09474396 malE maltose ABC transporter periplasmic protein; 99.82
TIGR03851450 chitin_NgcE carbohydrate ABC transporter, N-acetyl 99.81
COG1840299 AfuA ABC-type Fe3+ transport system, periplasmic c 99.79
COG2182420 MalE Maltose-binding periplasmic proteins/domains 99.77
PRK10974438 glycerol-3-phosphate transporter periplasmic bindi 99.69
COG1653433 UgpB ABC-type sugar transport system, periplasmic 99.67
PF01547315 SBP_bac_1: Bacterial extracellular solute-binding 99.63
PRK10852338 thiosulfate transporter subunit; Provisional 99.5
TIGR01256216 modA molybdenum ABC transporter, periplasmic molyb 99.49
COG4134384 ABC-type uncharacterized transport system, peripla 99.37
TIGR00971315 3a0106s03 sulfate/thiosulfate-binding protein. Thi 99.37
PRK10752329 sulfate transporter subunit; Provisional 99.36
PRK10677257 modA molybdate transporter periplasmic protein; Pr 99.3
PF13531230 SBP_bac_11: Bacterial extracellular solute-binding 99.27
PRK04168334 molybdate ABC transporter periplasmic substrate-bi 99.24
COG1613348 Sbp ABC-type sulfate transport system, periplasmic 99.15
PF02030 493 Lipoprotein_8: Hypothetical lipoprotein (MG045 fam 98.85
COG0725258 ModA ABC-type molybdate transport system, periplas 98.76
PRK03537188 molybdate ABC transporter periplasmic molybdate-bi 98.59
COG4588252 AcfC Accessory colonization factor AcfC, contains 97.9
TIGR03730273 tungstate_WtpA tungstate ABC transporter binding p 97.6
COG4150341 CysP ABC-type sulfate transport system, periplasmi 97.53
PRK09861272 cytoplasmic membrane lipoprotein-28; Provisional 95.86
PRK11063271 metQ DL-methionine transporter substrate-binding s 95.5
TIGR01098254 3A0109s03R phosphate/phosphite/phosphonate ABC tra 92.17
COG0226318 PstS ABC-type phosphate transport system, periplas 91.65
PRK10859 482 membrane-bound lytic transglycosylase F; Provision 83.52
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-34  Score=293.65  Aligned_cols=266  Identities=26%  Similarity=0.452  Sum_probs=213.7

Q ss_pred             eEEEEeCCCCccHHHHHHHHhhcCCeEEEEEeeecc-----------cccccceEecCchhHHHHHHCCCcccccccccc
Q 044097          137 PLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCAS-----------IDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQ  205 (439)
Q Consensus       137 ~L~v~~w~~~~~~~li~~Fek~~GI~V~~~~~~~~s-----------~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~~  205 (439)
                      +|+|++|++++.+++++.|++++||+|.+.  .+++           ... ||.+.++..++.+++++|+|+||+..++ 
T Consensus        33 ~l~v~~w~gy~~~~~~~~F~k~tGi~V~~~--~~~sne~~~ak~~~g~~~-~Dvv~~s~~~~~~~~~~gll~~lD~skl-  108 (363)
T COG0687          33 TLNVYNWGGYIDPALLKPFEKETGIKVVYD--TFDSNEEMLAKLKAGGGG-YDVVVPSGYFVARLIKEGLLQPLDKSKL-  108 (363)
T ss_pred             EEEEEcccccCCHHHHHHHHHHHCCEEEEE--ecCCcHHHHHHHHcCCCC-ceEEEeCHHHHHHHHHcCCcccCChhhC-
Confidence            699999999999999999999999999997  3333           223 7777788999999999999999999863 


Q ss_pred             hhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCcc----ccCc-eeeccC
Q 044097          206 DWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPE----LAGR-ISMVNS  280 (439)
Q Consensus       206 ~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~----lkgk-I~~~~~  280 (439)
                      +++.++++.+   +..   ...| .|..|+|||.|++.+|+||++.++.  -.+|+||+|||+++    ++++ +.+.++
T Consensus       109 ~n~~~l~~~~---~~~---~~~d-~g~~y~vPy~~g~t~i~Yn~~~~~~--~~~~~sW~~l~d~~~~~~~k~~~~~~~d~  179 (363)
T COG0687         109 PNWKNLDPEF---LNP---PKFD-PGNKYSVPYFWGTTGIAYNTDKVKD--APPPTSWADLFDPEKFPGLKGKGVALLDD  179 (363)
T ss_pred             cCccccCHHH---hcc---ccCC-CCCEeeeeEEeeeeEEEEeccccCC--CCCCccHHHHhCchhhHHHhCCceEEecC
Confidence            3334455544   321   1134 4778999999999999999999992  14789999999986    7887 788888


Q ss_pred             hhHHHH----hCCH----------HHHHHHHHHHhh-hhcccCchHHHHHhhcCCeEEEEEccccHHHHH--HcCCCeeE
Q 044097          281 PREVIV----AGGK----------IAVQQNLALLAN-QVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAV--KRMSNVAV  343 (439)
Q Consensus       281 ~~~~~~----~~G~----------d~~~e~L~~l~~-~v~~~~~~~~~~~f~~Ge~~~~i~ws~~~~~~~--~~~~~v~~  343 (439)
                      +++++.    .+|.          .++.+.|.++++ ++..++++++.+.|++|+++|+++|++++..+.  +.+.++.|
T Consensus       180 ~~~~~~~al~~lg~~~n~~~~~~~~~a~~~L~~~kp~~~~~~~~~~~~~~l~~Gev~~a~~w~g~~~~~~~~~~~~~i~~  259 (363)
T COG0687         180 DREVFGAALALLGKSPNTTDPEDLKKAFDLLDKLKPVNVYWFDGSQYVQLLANGEVVLAMGWSGDAAAAKAAKNGAPIEF  259 (363)
T ss_pred             hHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHhCcccEEEecchHHHHHHhcCCEEEEEEeChHHHHHHHhhcCCceEE
Confidence            887663    3342          357788889999 666667788999999999999999999998874  56678999


Q ss_pred             EccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHhc
Q 044097          344 VVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLK  423 (439)
Q Consensus       344 ~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~~  423 (439)
                      ++|++|+.+|.++|+|+++++|++            +|++||+|+++||+|..+++. .+|++|+.  .+...+++++..
T Consensus       260 ~~p~eG~~~w~D~~~ipk~a~n~~------------~A~~fInf~~~pe~~a~~~~~-~~y~~~n~--~a~~~~~~~~~~  324 (363)
T COG0687         260 VIPKEGSILWFDNLAIPKGAKNVD------------AAYKFINFLLDPEVAAKLAEF-VGYAPPNK--AARKLLPKEIKD  324 (363)
T ss_pred             EcCCCCceeeeEeeeeeCCCCCHH------------HHHHHHHHhhCHHHHHHHHHh-ccCCCCCH--HHHHhCcHhhhc
Confidence            999999999999999999999999            999999999999999999975 78888876  323335555544


Q ss_pred             CCCCCCc
Q 044097          424 GKPSVDT  430 (439)
Q Consensus       424 ~~~~~~~  430 (439)
                      ....+++
T Consensus       325 ~~~~~p~  331 (363)
T COG0687         325 DPAIYPT  331 (363)
T ss_pred             CcccCCC
Confidence            4444433

>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed Back     alignment and domain information
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional Back     alignment and domain information
>TIGR03261 phnS2 putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein Back     alignment and domain information
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein Back     alignment and domain information
>PRK11622 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01254 sfuA ABC transporter periplasmic binding protein, thiB subfamily Back     alignment and domain information
>TIGR01276 thiB thiamine ABC transporter, periplasmic binding protein Back     alignment and domain information
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional Back     alignment and domain information
>PRK15046 2-aminoethylphosphonate ABC transporter substrate-binding protein; Provisional Back     alignment and domain information
>PF13416 SBP_bac_8: Bacterial extracellular solute-binding protein; PDB: 2FNC_A 1ELJ_A 3TTM_B 3TTK_C 2W7Y_A 3RPW_A 2GHB_C 2GHA_A 1POY_3 1POT_A Back     alignment and domain information
>PF13343 SBP_bac_6: Bacterial extracellular solute-binding protein; PDB: 2QRY_D 1XVX_A 1SI1_A 1SI0_A 1Q35_A 1Y9U_A 2OWS_A 2OWT_A 2VP1_A 2VOZ_A Back     alignment and domain information
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family Back     alignment and domain information
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism] Back     alignment and domain information
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed Back     alignment and domain information
>TIGR03851 chitin_NgcE carbohydrate ABC transporter, N-acetylglucosamine/diacetylchitobiose-binding protein Back     alignment and domain information
>COG1840 AfuA ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG2182 MalE Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10974 glycerol-3-phosphate transporter periplasmic binding protein; Provisional Back     alignment and domain information
>COG1653 UgpB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01547 SBP_bac_1: Bacterial extracellular solute-binding protein; InterPro: IPR006059 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane Back     alignment and domain information
>PRK10852 thiosulfate transporter subunit; Provisional Back     alignment and domain information
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein Back     alignment and domain information
>COG4134 ABC-type uncharacterized transport system, periplasmic component [General function prediction only] Back     alignment and domain information
>TIGR00971 3a0106s03 sulfate/thiosulfate-binding protein Back     alignment and domain information
>PRK10752 sulfate transporter subunit; Provisional Back     alignment and domain information
>PRK10677 modA molybdate transporter periplasmic protein; Provisional Back     alignment and domain information
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A Back     alignment and domain information
>PRK04168 molybdate ABC transporter periplasmic substrate-binding protein; Provisional Back     alignment and domain information
>COG1613 Sbp ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02030 Lipoprotein_8: Hypothetical lipoprotein (MG045 family) Back     alignment and domain information
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK03537 molybdate ABC transporter periplasmic molybdate-binding protein; Provisional Back     alignment and domain information
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only] Back     alignment and domain information
>TIGR03730 tungstate_WtpA tungstate ABC transporter binding protein WtpA Back     alignment and domain information
>COG4150 CysP ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional Back     alignment and domain information
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional Back     alignment and domain information
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein Back     alignment and domain information
>COG0226 PstS ABC-type phosphate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10859 membrane-bound lytic transglycosylase F; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
3ttl_A340 Crystal Structure Of Apo-Spue Length = 340 1e-10
1a99_A344 Putrescine Receptor (Potf) From E. Coli Length = 34 3e-10
3ttn_A340 Crystal Structures Of Polyamine Receptors Spud And 4e-10
4gl0_A333 Putative SpermidinePUTRESCINE ABC TRANSPORTER FROM 2e-09
3ttm_A346 Crystal Structure Of Spud In Complex With Putrescin 4e-09
3ttk_A345 Crystal Structure Of Apo-Spud Length = 345 4e-09
1poy_1323 SpermidinePUTRESCINE-Binding Protein Complexed With 5e-06
1pot_A325 Spermidine/putrescine-binding Protein Complexed Wit 5e-06
4eqb_A330 1.5 Angstrom Crystal Structure Of SpermidinePUTRESC 1e-05
>pdb|3TTL|A Chain A, Crystal Structure Of Apo-Spue Length = 340 Back     alignment and structure 
Iteration: 1

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 26/165 (15%)
Query: 226 EIDPRGKIWAAPYRWGTMAIGYKKSKFQN-HNLAPIEDWKDPWWPELAGR-----ISMVN 279
           E+   G  +A PY WGT  IGY  +K +      PI+ W   + PE   +     ++ ++
Sbjct: 96  EVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMD 155
Query: 280 SPREVIVAGGKI--------------AVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAV 325
           S  E++ A                    ++ L  +   V  F S+ Y+     G++ VA 
Sbjct: 156 SGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAF 215
Query: 326 GWSSDVLPAVKRMS------NVAVVVPKSGASLWADLWAIPAASR 364
           G+S DV  A  R        ++  V+PK GA+LW DL AIPA ++
Sbjct: 216 GYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAK 260
>pdb|1A99|A Chain A, Putrescine Receptor (Potf) From E. Coli Length = 344 Back     alignment and structure
>pdb|3TTN|A Chain A, Crystal Structures Of Polyamine Receptors Spud And Spue From Pseudomonas Aeruginosa Length = 340 Back     alignment and structure
>pdb|4GL0|A Chain A, Putative SpermidinePUTRESCINE ABC TRANSPORTER FROM LISTERIA Monocytogenes Length = 333 Back     alignment and structure
>pdb|3TTM|A Chain A, Crystal Structure Of Spud In Complex With Putrescine Length = 346 Back     alignment and structure
>pdb|3TTK|A Chain A, Crystal Structure Of Apo-Spud Length = 345 Back     alignment and structure
>pdb|1POY|1 Chain 1, SpermidinePUTRESCINE-Binding Protein Complexed With Spermidine (Dimer Form) Length = 323 Back     alignment and structure
>pdb|1POT|A Chain A, Spermidine/putrescine-binding Protein Complexed With Spermidine (monomer Form) Length = 325 Back     alignment and structure
>pdb|4EQB|A Chain A, 1.5 Angstrom Crystal Structure Of SpermidinePUTRESCINE ABC Transporter Substrate-Binding Protein From Streptococcus Pneumoniae Strain Canada Mdr_19a In Complex With Calcium And Hepes. Length = 330 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query439
1pot_A325 POTD, spermidine/putrescine-binding protein; polya 5e-31
4eqb_A330 Spermidine/putrescine ABC superfamily ATP binding 1e-30
2v84_A343 Spermidine/putrescine ABC transporter, periplasmi 2e-27
4edp_A351 ABC transporter, substrate-binding protein; clostr 2e-26
3ttn_A340 Polyamine transport protein; polyamine binding pro 2e-25
3ttm_A346 Polyamine transport protein; polyamine binding, pu 4e-25
1a99_A344 POTF, putrescine-binding protein; transport, perip 5e-25
3pu5_A333 Extracellular solute-binding protein; structural g 1e-21
3rpw_A365 ABC transporter; structural genomics, PSI-biology, 6e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
3c9h_A355 ABC transporter, substrate binding protein; struct 2e-04
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1* Length = 325 Back     alignment and structure
 Score =  120 bits (303), Expect = 5e-31
 Identities = 45/178 (25%), Positives = 63/178 (35%), Gaps = 32/178 (17%)

Query: 228 DPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVA 287
           DP    ++ PY WG  AIG             +  W D W PE  G + + +  REV   
Sbjct: 97  DPNND-YSIPYIWGATAIGVNGDAVDP---KSVTSWADLWKPEYKGSLLLTDDAREVFQM 152

Query: 288 G----GK----------IAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLP 333
                G            A    L  L   V  F+S +    +  G+V + + W+     
Sbjct: 153 ALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFV 212

Query: 334 AVKRMSNVAVVVPKSGASLWADLWAIPA-ASRLETKQIGGQVRGPSPLIHQWIEFCLQ 390
           A +  + + VV PK G   W D  AIPA A   E                + I F L+
Sbjct: 213 ARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKE-------------GALKLINFLLR 257
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431} Length = 330 Back     alignment and structure
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum} Length = 343 Back     alignment and structure
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens} Length = 351 Back     alignment and structure
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A* Length = 340 Back     alignment and structure
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A Length = 346 Back     alignment and structure
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1 Length = 344 Back     alignment and structure
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis} Length = 333 Back     alignment and structure
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris} Length = 365 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} Length = 355 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
4gl0_A333 LMO0810 protein; structural genomics, IDP05673, sp 100.0
4eqb_A330 Spermidine/putrescine ABC superfamily ATP binding 100.0
3ttm_A346 Polyamine transport protein; polyamine binding, pu 100.0
3ttn_A340 Polyamine transport protein; polyamine binding pro 100.0
1pot_A325 POTD, spermidine/putrescine-binding protein; polya 99.98
4i1d_A324 ABC transporter substrate-binding protein; structu 99.97
3rpw_A365 ABC transporter; structural genomics, PSI-biology, 99.97
1a99_A344 POTF, putrescine-binding protein; transport, perip 99.97
4edp_A351 ABC transporter, substrate-binding protein; clostr 99.96
4euo_A320 ABC transporter, substrate binding protein (polya; 99.96
2v84_A343 Spermidine/putrescine ABC transporter, periplasmi 99.96
3pu5_A333 Extracellular solute-binding protein; structural g 99.95
3e13_X322 Putative iron-uptake ABC transport system, peripla 99.93
1xvx_A312 YFUA; periplasmic iron binding protein, iron bindi 99.92
2pt1_A334 Iron transport protein; C-clamp, iron-binding prot 99.92
1q35_A320 Iron binding protein FBPA; metal binding protein; 99.92
4hs7_A420 Bacterial extracellular solute-binding protein, P; 99.92
3c9h_A355 ABC transporter, substrate binding protein; struct 99.92
3uor_A458 ABC transporter sugar binding protein; ALFA/beta p 99.91
2qry_A330 Thiamine-binding periplasmic protein; thiamin bind 99.91
2voz_A346 FUTA2, periplasmic iron-binding protein; ferric bi 99.91
1nnf_A309 Iron-utilization periplasmic protein; iron-binding 99.91
3quf_A414 Extracellular solute-binding protein, family 1; st 99.91
1y9u_A323 Putative iron binding protein; periplasmic binding 99.89
2xd3_A416 MALX, maltose/maltodextrin-binding protein; solute 99.89
3k01_A412 Acarbose/maltose binding protein GACH; ABC transpo 99.89
4dxb_A 637 RG13, maltose-binding periplasmic protein, beta-la 99.88
2gha_A382 Maltose ABC transporter, periplasmic maltose-BIND 99.87
1elj_A381 Maltodextrin-binding protein; protein-carbohydrate 99.87
4hw8_A420 Bacterial extracellular solute-binding protein, P; 99.86
1urs_A402 Maltose-binding protein; maltodextrin-binding prot 99.86
2zyo_A397 Solute-binding protein; open form, sugar binding p 99.86
2heu_A401 Sugar ABC transporter, sugar-binding protein; peri 99.85
2gh9_A386 Maltose/maltodextrin-binding protein; MBP, maltose 99.85
3n94_A 475 Fusion protein of maltose-binding periplasmic Pro 99.85
3ob4_A 500 Conglutin, maltose ABC transporter periplasmic pro 99.85
3oo8_A415 ABC transporter binding protein ACBH; class 2 SBP 99.85
4g68_A456 ABC transporter; transport protein; HET: XYS; 1.80 99.85
3iot_A 449 Maltose-binding protein, huntingtin fusion protei; 99.85
3mq9_A 471 Bone marrow stromal antigen 2 fused to maltose-BI 99.85
4h1g_A 715 Maltose binding protein-cakar3 motor domain fusio; 99.84
3oai_A 507 Maltose-binding periplasmic protein, myelin prote; 99.84
4exk_A 487 Maltose-binding periplasmic protein, uncharacteri 99.84
1mh3_A421 Maltose binding-A1 homeodomain protein chimera; MA 99.84
3py7_A 523 Maltose-binding periplasmic protein,paxillin LD1, 99.84
3thi_A371 Protein (thiaminase I); thiamin degradation, trans 99.84
3osr_A 653 Maltose-binding periplasmic protein, green fluore 99.84
2xz3_A 463 Maltose ABC transporter periplasmic protein, ENVE 99.84
1hsj_A 487 Fusion protein consisting of staphylococcus access 99.84
3i3v_A405 Probable secreted solute-binding lipoprotein; tran 99.84
2b3f_A400 Glucose-binding protein; protein-carbohydrate comp 99.83
3o3u_N 581 Maltose-binding periplasmic protein, advanced Gly 99.83
1y4c_A 494 Maltose binding protein fused with designed helica 99.83
3csg_A 461 MBP, maltose-binding protein monobody YS1 fusion, 99.83
4b3n_A 602 Maltose-binding periplasmic protein, tripartite mo 99.83
2vgq_A 477 Maltose-binding periplasmic protein, mitochondrial 99.83
3h3g_A 539 Fusion protein of maltose-binding periplasmic DOM 99.83
2z8f_A412 Galacto-N-biose/lacto-N-biose I transporter subst 99.83
3mp6_A 522 MBP, SGF29, maltose-binding periplasmic protein, l 99.83
2w7y_A430 FCSSBP, probable sugar ABC transporter, sugar-bind 99.83
3omb_A 535 Extracellular solute-binding protein, family 1; PS 99.83
2zxt_A 465 Maltose-binding periplasmic protein, linker, MITO 99.83
1r6z_P 509 Chimera of maltose-binding periplasmic protein AN 99.82
1eu8_A409 Trehalose/maltose binding protein; protein-carbohy 99.82
3f5f_A 658 Maltose-binding periplasmic protein, heparan sulfa 99.82
3h4z_A 568 Maltose-binding periplasmic protein fused with Al 99.82
2uvj_A408 TOGB, ABC type periplasmic sugar-binding protein; 99.81
3dm0_A 694 Maltose-binding periplasmic protein fused with RAC 99.8
4aq4_A419 SN-glycerol-3-phosphate-binding periplasmic prote; 99.79
3osq_A 661 Maltose-binding periplasmic protein, green fluore 99.78
2nvu_B 805 Maltose binding protein/NEDD8-activating enzyme E1 99.77
4gqo_A433 LMO0859 protein; virulence, pathogenesis, vaccine 99.76
1sbp_A310 Sulfate-binding protein; 1.70A {Salmonella typhimu 99.67
3a09_A 490 ALGQ1; sugar binding protein, alginate; HET: MAW B 99.64
3vlv_A 502 ALGQ1; sugar binding protein, alginate; HET: MAW L 99.57
3cg1_A296 UPF0100 protein PF0080; ABC transporter, binding p 99.57
3r26_A237 Molybdate-binding periplasmic protein; protein bin 99.49
3cfx_A296 UPF0100 protein MA_0280; ABC transporter, binding 99.47
3cij_A295 UPF0100 protein AF_0094; archaeal periplasmic bind 99.46
3gzg_A253 Molybdate-binding periplasmic protein; permease; m 99.4
2hxw_A237 Major antigenic peptide PEB3; periplasmic binding 99.37
3cfz_A292 UPF0100 protein MJ1186; ABC transporter, binding p 99.3
1atg_A231 MODA, periplasmic molybdate-binding protein; tungs 99.24
3k6v_A354 Solute-binding protein MA_0280; MODA, molybdate, p 99.09
4gd5_A279 Phosphate ABC transporter, phosphate-binding PROT; 98.19
4i62_A269 Amino acid ABC transporter, periplasmic amino ACI 94.43
2yln_A283 Putative ABC transporter, periplasmic binding Pro 93.21
3muq_A237 Uncharacterized conserved protein; structural geno 92.94
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 89.43
3lr1_A236 Tungstate ABC transporter, periplasmic tungstate- 85.48
2v25_A259 Major cell-binding factor; antigen, adhesin, aspar 82.26
3kn3_A242 Putative periplasmic protein; alpha-beta structure 82.05
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes} Back     alignment and structure
Probab=100.00  E-value=6.1e-36  Score=297.46  Aligned_cols=268  Identities=22%  Similarity=0.362  Sum_probs=212.7

Q ss_pred             cccceeEEEEeCCCCccHHHHHHHHhhcCCeEEEEEeeecccc----------cccceEecCchhHHHHHHCCCcccccc
Q 044097          132 YALTVPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCASID----------GIVNNLSTPFNKLSFAIKKRFIEPIAE  201 (439)
Q Consensus       132 ~~~~~~L~v~~w~~~~~~~li~~Fek~~GI~V~~~~~~~~s~~----------~~~~dv~~~~~~~~~~i~~Gll~pl~~  201 (439)
                      .+.+.+|+||+|++++.++++++|++++||+|+++.  +++.+          ..+|.+.++..++.+++++|+|+|++.
T Consensus         7 ~a~~~~L~vy~W~~y~~~~~i~~Fek~tGIkV~~~~--~~s~e~~~~kl~ag~~~~DVv~~~~~~~~~~~~~gll~~ld~   84 (333)
T 4gl0_A            7 YAGSNTLTIYNWGDYIDPSLITKFEKETGIKVIYQT--FDSNEAMMTKIEQGGTTFDIAVPSDYAISKMKEENLLIPLDH   84 (333)
T ss_dssp             ---CCEEEEEEETTCSCHHHHHHHHHHHCCEEEEEE--ESCHHHHHHHHHTCSSCCSEECCBHHHHHHHHHTTCBCCCCG
T ss_pred             CCCCCEEEEEeCCccCCHHHHHHHHHHHCCEEEEEe--CCCHHHHHHHHHcCCCCCeEEEeCHHHHHHHHHcCCcccccc
Confidence            334568999999999999999999999999999972  22221          225555566788999999999999998


Q ss_pred             cccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccCh
Q 044097          202 AEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSP  281 (439)
Q Consensus       202 ~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~  281 (439)
                      .. .+++.++++.+   .    ...+++ |+.|++||.+++.+|+||++++++.   +|+||+||++|+++|++.+.++.
T Consensus        85 ~~-~~n~~~~~~~~---~----~~~~~~-~~~y~vp~~~~~~~i~yn~~~~~~~---~~~sw~dl~dp~~kg~~~~~~~~  152 (333)
T 4gl0_A           85 SK-LPNEKYLDPRF---M----DLSFDD-DNKYSMPYFWGTLGIIYNKEMFPDK---NFDTWNALFDPELKNQILLIDGA  152 (333)
T ss_dssp             GG-CGGGGGBCGGG---S----SCGGGG-GGSSEEEEEEEEEEEEEETTTCTTC---CTTSGGGGGCGGGTTCEEEESCH
T ss_pred             cc-ccccccCCHHH---h----hhccCC-CCceEeceeeeeeeeeechhhcccC---CcccHHhhcCHHhhhccccCCcH
Confidence            75 23344444433   1    123443 6669999999999999999999873   78999999999999999999887


Q ss_pred             hHHHH----hCC-------H---HHHHHHHHHHhhhhcccCchHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccC
Q 044097          282 REVIV----AGG-------K---IAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPK  347 (439)
Q Consensus       282 ~~~~~----~~G-------~---d~~~e~L~~l~~~v~~~~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~  347 (439)
                      ...+.    ..|       .   ..+.+.+..+++++..+++++..+.|++|+++|++.|+++...++..+.++.+++|+
T Consensus       153 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~p~  232 (333)
T 4gl0_A          153 REVMGLGLNSLGYSLNDTNKAHLQAARDKLETMTPNVKAIVGDEIKLLMADNEAGVAVTFSGEAAEMLSENEDLEYVIPK  232 (333)
T ss_dssp             HHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHHHGGGEEEEESTTHHHHTSCC-CCEEEEEHHHHHHHHHHCTTEEEECCS
T ss_pred             HHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhhccccceecchhhhhhhhccchheehhhhHHHHHHHhhccccccccCC
Confidence            76542    222       1   234556667777777777778889999999999999999998888889999999999


Q ss_pred             CCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHhcCCCC
Q 044097          348 SGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKGKPS  427 (439)
Q Consensus       348 eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~~~~~~  427 (439)
                      +|+..|+++++|+++++|++            +|++||+||+|+|+|..+++. .+|++|+.  .+...+|+++++....
T Consensus       233 eG~~~~~~~~~I~k~a~n~e------------~A~~fi~fllspe~q~~~~~~-~gy~~~n~--~a~~~l~~~~~~~~~~  297 (333)
T 4gl0_A          233 DGSNLWFDNMVIPKTAKNVD------------GAHKFINFMLKPENAAINAEY-VGYATPNA--KAVELLPKEISSDERF  297 (333)
T ss_dssp             SCEEEEEEEEECBTTCSCHH------------HHHHHHHHHHSHHHHHHHHHH-HCCBCCBH--HHHHHSCHHHHTCTTT
T ss_pred             CCCccccceEEEEcCCCCHH------------HHHHHHHHhcCHHHHHHHHHH-hCCCCccH--HHHHhCCHHHHhCccc
Confidence            99999999999999999999            999999999999999999975 68888876  4455689998876444


Q ss_pred             C
Q 044097          428 V  428 (439)
Q Consensus       428 ~  428 (439)
                      .
T Consensus       298 ~  298 (333)
T 4gl0_A          298 Y  298 (333)
T ss_dssp             S
T ss_pred             C
Confidence            3
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431} Back     alignment and structure
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A Back     alignment and structure
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A* Back     alignment and structure
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1* Back     alignment and structure
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum} Back     alignment and structure
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris} Back     alignment and structure
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1 Back     alignment and structure
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens} Back     alignment and structure
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A Back     alignment and structure
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum} Back     alignment and structure
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis} Back     alignment and structure
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A Back     alignment and structure
>1xvx_A YFUA; periplasmic iron binding protein, iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A* Back     alignment and structure
>2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, perip binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A Back     alignment and structure
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A Back     alignment and structure
>4hs7_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: P33; 2.60A {Staphylococcus aureus subsp} Back     alignment and structure
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} Back     alignment and structure
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV} Back     alignment and structure
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli} Back     alignment and structure
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A* Back     alignment and structure
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A 3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A Back     alignment and structure
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp} Back     alignment and structure
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A Back     alignment and structure
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A* Back     alignment and structure
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A* Back     alignment and structure
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera; TEM, beta-lactamase, MBP, allosteric regulation, zinc bindin maltose binding; 2.29A {Escherichia coli} PDB: 4dxc_A Back     alignment and structure
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A* Back     alignment and structure
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1 Back     alignment and structure
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A* Back     alignment and structure
>1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle, thermoacidophIle, hyperthermophIle, thermophIle; HET: MLR; 1.45A {Alicyclobacillus acidocaldarius} SCOP: c.94.1.1 PDB: 1urg_A* 1urd_A* Back     alignment and structure
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A* Back     alignment and structure
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A Back     alignment and structure
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermoph protein, periplasmic binding protein, sugar binding protein; HET: MLR; 1.95A {Thermus thermophilus} Back     alignment and structure
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A* Back     alignment and structure
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli} Back     alignment and structure
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A Back     alignment and structure
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B* Back     alignment and structure
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A Back     alignment and structure
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} Back     alignment and structure
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli} Back     alignment and structure
>4exk_A Maltose-binding periplasmic protein, uncharacteri protein chimera; MCSG, pcsep, MBP-fused target, structural genomics; HET: MTT; 1.28A {Escherichia coli} PDB: 3g7v_A* 3g7w_A* 3sev_A* 3ser_A* 3sew_A* 3set_A* 3ses_A* 3seu_A* 3sex_A* 3sey_A* 3q27_A* 3q28_A* 3q26_A* 3q25_A* 3q29_A* 1nmu_A* 2ok2_A* 3pgf_A* 1t0k_A* 3rum_A* ... Back     alignment and structure
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A Back     alignment and structure
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli} Back     alignment and structure
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A Back     alignment and structure
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli} Back     alignment and structure
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A* Back     alignment and structure
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1 Back     alignment and structure
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor} Back     alignment and structure
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A* Back     alignment and structure
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A Back     alignment and structure
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli} Back     alignment and structure
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A* Back     alignment and structure
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A Back     alignment and structure
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli} Back     alignment and structure
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A* Back     alignment and structure
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A* Back     alignment and structure
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A* Back     alignment and structure
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae} Back     alignment and structure
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp} Back     alignment and structure
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli} Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Back     alignment and structure
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1 Back     alignment and structure
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12} Back     alignment and structure
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli} Back     alignment and structure
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli} Back     alignment and structure
>3osq_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia coli} Back     alignment and structure
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Back     alignment and structure
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes} Back     alignment and structure
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1 Back     alignment and structure
>3a09_A ALGQ1; sugar binding protein, alginate; HET: MAW BEM MAV; 1.40A {Sphingomonas} PDB: 1y3p_A* 1y3q_A 1y3n_A* 3vlv_A* 3vlu_A* 3vlw_A* 1j1n_A* 1kwh_A Back     alignment and structure
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A Back     alignment and structure
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A Back     alignment and structure
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A Back     alignment and structure
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans} Back     alignment and structure
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A Back     alignment and structure
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A Back     alignment and structure
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A* Back     alignment and structure
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii} Back     alignment and structure
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1 Back     alignment and structure
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A Back     alignment and structure
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens} Back     alignment and structure
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Back     alignment and structure
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus} Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Back     alignment and structure
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens} Back     alignment and structure
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Back     alignment and structure
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 439
d1a99a_341 c.94.1.1 (A:) Putrescine receptor (PotF) {Escheric 5e-08
d1pota_322 c.94.1.1 (A:) Spermidine/putrescine-binding protei 1e-06
>d1a99a_ c.94.1.1 (A:) Putrescine receptor (PotF) {Escherichia coli [TaxId: 562]} Length = 341 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Putrescine receptor (PotF)
species: Escherichia coli [TaxId: 562]

 Score = 52.1 bits (123), Expect = 5e-08
 Identities = 59/324 (18%), Positives = 114/324 (35%), Gaps = 62/324 (19%)

Query: 138 LRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCASIDGIVNNLST----------PFNKL 187
           L + +  + +    V +F +  G ++ + +    S + +   L              + L
Sbjct: 4   LHIYNWSDYIAPDTVANFEKETGIKVVYDVF--DSNEVLEGKLMAGSTGFDLVVPSASFL 61

Query: 188 SFAIKKRFIEPIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGY 247
              +     +P+ +++  +W        K+                +A PY W T  IGY
Sbjct: 62  ERQLTAGVFQPLDKSKLPEWKNLDPELLKLV-------AKHDPDNKFAMPYMWATTGIGY 114

Query: 248 KKSKFQNHNL--APIEDWKDPWWPELAGRI-----SMVNSPREVIVAGGK---------- 290
              K +      AP++ W     PE   ++     S +++P EV                
Sbjct: 115 NVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTK 174

Query: 291 -----IAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMS------ 339
                      L  L   +R F S+ Y+     GD+ VA+GW+ DV  A  R        
Sbjct: 175 ADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGV 234

Query: 340 NVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQ 399
           NV+  +PK GA  + D++A+PA ++                 +Q++ + L+         
Sbjct: 235 NVSFSIPKEGAMAFFDVFAMPADAK------------NKDEAYQFLNYLLRPDVVAHISD 282

Query: 400 EVIPGASPSALESTLVKLPEELLK 423
            V      +A ++    +  E+ +
Sbjct: 283 HV---FYANANKAATPLVSAEVRE 303
>d1pota_ c.94.1.1 (A:) Spermidine/putrescine-binding protein PotD {Escherichia coli [TaxId: 562]} Length = 322 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query439
d1pota_322 Spermidine/putrescine-binding protein PotD {Escher 100.0
d1a99a_341 Putrescine receptor (PotF) {Escherichia coli [TaxI 99.94
d1xvxa_311 Ferric-binding protein FbpA {Yersinia enterocoliti 99.92
d1q35a_318 Ferric-binding protein FbpA {Mannheimia haemolytic 99.9
d1nnfa_308 Ferric-binding protein FbpA {Haemophilus influenza 99.88
d1y4ta_317 Ferric-binding protein FbpA {Campylobacter jejuni 99.85
d3thia_362 Thiaminase I {Paenibacillus thiaminolyticus [TaxId 99.85
d1elja_380 D-maltodextrin-binding protein, MBP {Archaeon Pyro 99.82
d1laxa_369 D-maltodextrin-binding protein, MBP {Escherichia c 99.81
d1ursa_367 D-maltodextrin-binding protein, MBP {Alicyclobacil 99.81
d1eu8a_407 D-maltodextrin-binding protein, MBP {Archaeon Ther 99.8
d1y9ua_318 Ferric-binding protein FbpA {Bordetella pertussis 99.78
d1j1na_ 492 Alginate-binding periplasmic protein AlgQ2 {Sphing 99.54
d1atga_231 Molybdate-binding protein, ModA {Azotobacter vinel 99.47
d1amfa_231 Molybdate-binding protein, ModA {Escherichia coli 99.34
d1sbpa_309 Sulphate-binding protein {Salmonella typhimurium [ 99.33
d2onsa1311 Molybdate-binding protein, ModA {Archaeoglobus ful 99.15
d1twya_249 ABC transporter, periplasmic substrate-binding pro 96.96
>d1pota_ c.94.1.1 (A:) Spermidine/putrescine-binding protein PotD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Spermidine/putrescine-binding protein PotD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-32  Score=269.08  Aligned_cols=265  Identities=23%  Similarity=0.363  Sum_probs=208.7

Q ss_pred             eEEEEeCCCCccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCcccccccccchh
Q 044097          137 PLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQDW  207 (439)
Q Consensus       137 ~L~v~~w~~~~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~~~~  207 (439)
                      +|+|++|++++.++++++||+++||+|+++..         ..++....+|.+..+..++..++++|+++||+... .++
T Consensus         3 ~l~~~~w~~~~~~~ii~~Fe~~tgI~V~~~~~~~~~~~~~~l~a~~~~~~Dvv~~~~~~~~~~~~~g~~~~ld~~~-~~~   81 (322)
T d1pota_           3 TLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKSK-LTN   81 (322)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHHCEEEEEEEESCHHHHHHHHTTCSSSCSSBBCCBGGGHHHHHHHTCBCCCCTTS-CTT
T ss_pred             EEEEEeCCcccCHHHHHHHHHHhCCEEEEEeCCCHHHHHHHHHhcCCCCCeEEEeChHHHHHHHhCCcccccchhh-cch
Confidence            79999999999899999999999999999721         11111222444456678999999999999998764 233


Q ss_pred             hcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHH-
Q 044097          208 FKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIV-  286 (439)
Q Consensus       208 ~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~-  286 (439)
                      +..+.+.+   .+    ...+ +|+.|++|+..++.+++||+++|++.   +|+||+||++++++|++.+.+.+...+. 
T Consensus        82 ~~~~~~~~---~~----~~~~-~g~~~~~P~~~~~~~l~Yn~~~~~~~---~p~sw~dl~~~~~~g~~~~~~~~~~~~~~  150 (322)
T d1pota_          82 FSNLDPDM---LN----KPFD-PNNDYSIPYIWGATAIGVNGDAVDPK---SVTSWADLWKPEYKGSLLLTDDAREVFQM  150 (322)
T ss_dssp             GGGBCGGG---SC----CTTS-TTCSSCEEEEEEEEEEEEETTTSCTT---TCCSSGGGGSGGGTTCEEECSCHHHHHHH
T ss_pred             hhccChhh---hc----cccC-CCCceEeeeeeeeeeeEehhhhcCcc---ccCcHHHHhChHhhhcccccCchhhhhHH
Confidence            34444332   21    2223 37779999999999999999999874   7999999999999999998876655432 


Q ss_pred             ---hC-------CH---HHHHHHHHHHhhhhcccCchHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccCCCceee
Q 044097          287 ---AG-------GK---IAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLW  353 (439)
Q Consensus       287 ---~~-------G~---d~~~e~L~~l~~~v~~~~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~~~~  353 (439)
                         ..       +.   ....+.+..+.+++..+.+++..+.|.+|++.|++.|++.+....+.+.++++.+|++|+..+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~  230 (322)
T d1pota_         151 ALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFW  230 (322)
T ss_dssp             HHHHTTCCTTCCCHHHHHHHHHHHHHTGGGEEEECSSCTHHHHHTTSCSEEEEEHHHHHHHHTTSCCEEEECCTTCCEEE
T ss_pred             HHHHhccCccccchhhHHHHHHHHHHhccccceeeccccccccccCcEEEEEEechhHHHHHhhccccceeeccCCceee
Confidence               11       11   244566677777777777777889999999999999999988888888899999999999999


Q ss_pred             eeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHhcCCCCC
Q 044097          354 ADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKGKPSV  428 (439)
Q Consensus       354 ~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~~~~~~~  428 (439)
                      +++++|+|+++|++            +|++||+||+|+|.|..+++. .|+.+|+.  .+...+|+|+++....+
T Consensus       231 ~~~~~I~k~a~n~~------------~A~~fi~fl~s~e~q~~~~~~-~g~~p~~~--~a~~~~~~e~~~~~~~~  290 (322)
T d1pota_         231 MDSLAIPANAKNKE------------GALKLINFLLRPDVAKQVAET-IGYPTPNL--AARKLLSPEVANDKTLY  290 (322)
T ss_dssp             EEEEBCBTTCTTHH------------HHHHHHHHHHSHHHHHHHHHH-HCCCCSBS--TTTTTSCHHHHTCTTTS
T ss_pred             eeeeEEecCCCCHH------------HHHHHHHHHcCHHHHHHHHHH-hCCCCcCH--HHHhhCCHHHHhCcccC
Confidence            99999999999999            999999999999999999976 57766655  45666899998775543
>d1a99a_ c.94.1.1 (A:) Putrescine receptor (PotF) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia enterocolitica, YfuA [TaxId: 630]} Back     information, alignment and structure
>d1q35a_ c.94.1.1 (A:) Ferric-binding protein FbpA {Mannheimia haemolytica [TaxId: 75985]} Back     information, alignment and structure
>d1nnfa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1y4ta_ c.94.1.1 (A:) Ferric-binding protein FbpA {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d3thia_ c.94.1.1 (A:) Thiaminase I {Paenibacillus thiaminolyticus [TaxId: 49283]} Back     information, alignment and structure
>d1elja_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1laxa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ursa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1eu8a_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1y9ua_ c.94.1.1 (A:) Ferric-binding protein FbpA {Bordetella pertussis [TaxId: 520]} Back     information, alignment and structure
>d1j1na_ c.94.1.1 (A:) Alginate-binding periplasmic protein AlgQ2 {Sphingomonas sp. [TaxId: 28214]} Back     information, alignment and structure
>d1atga_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1amfa_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sbpa_ c.94.1.1 (A:) Sulphate-binding protein {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2onsa1 c.94.1.1 (A:32-342) Molybdate-binding protein, ModA {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1twya_ c.94.1.1 (A:) ABC transporter, periplasmic substrate-binding protein VCA0807 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure