Citrus Sinensis ID: 044164

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710----

MAATTVSKVPNFHDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLERSTRKSLALRGNIRDLNQVPVCFQAINNLDLSCLSPWGHPLLESSSNPSLLAKLLSHAFPSVVSLTIYARSPLTLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGTANEHFMSFFLKIPTLRDVQLREDYYPAPENDTTSEMRVDSCYRFQDALNRRHIPD

cccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccEEEEcccccccccccccccccHHHHHHHHHHHcccccEEEcccccHHHHHHHHcccccccEEEEEcccccccccccccHHHHHcccccccEEEcccccccccccHHHHHHcccccccccEEEccccccccccccHHHHHHHHHccccccEEEccccccccccccccHHHHHHHHHccccccEEEEccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEcccccccccHHHHHHHHcccccccEEEcccccccccccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHccccccEEEEccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHcHHHHHHHHcccccccccccccccccccccccccHHHHHcccccHHHHHHcccccccccEEEEEEEcccccccccccccccccccccccccccEEEcccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHccccc

cccccccccccHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccEEEEccccccHHHccHHcccccccccHcccccccHHHcccccHHHHHHHHHHccccccEEEEEEccHHHHHHHHcccccccEEEEEEEcccccccccccHHHHHHHcHHHHccccccEEEcccccHHHHHHcHHHHHHHHHHcHHHHccccccccHHHHHHHHHHccccHEEEEEHcccccHHccccHHHHHHHHHHcccccEEEEcccHHHcccccccccHHcccccccccccccHHHHHHHHHHcHHHHHEEEEccccccccHHHHHHHHHcccccEEEEEccEcccccccccccHHHHHHHHHHHHEEEccccccccHHHHHHHHHccccccEEEEcccHHccHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHHccEEEEEcccccccccHHcccccccccccccccccHHHHccccccccHHHHHHHcccccccccccccccccHHHHHHEcEEEEHHHHccHHHHcccccccccEEEEEEEEcccccccccccccHccHHHHccccHHHEEEEcccccEEEEEcccccccccHHHHHHHHHcccccccHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHccccccccccccccEccHHHHHHHHHHcccccc

maattvskvpnfhdilpdAIMSNIFSLITDTRTRNAMSLVCLKWCKLERSTRKSLALrgnirdlnqvpVCFQAInnldlsclspwghpllesssnpSLLAKLLSHAFPSVVSltiyarspltlhflapewpklshvKLVRWHqrfnapigydffalfehcpslssidlshfycwtedlptaFELYPSIAASLSHLNLLVghsftegykshelLSITSACPNLSQLLATCvfdhrflgfvgdetllsiasncprlsllhladstalssnssradpnnndegyasedarisptalgdffeslpLLEELVLDVGNNVRDTWPALEllnskcprlkslklgQVHGICreidssmpAAGVALWKGLESLsiknsadltDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSqdheirgesssssheacgfkdfqtEKRIMMSEEEASLKKkakccdgsgngfsscsdTWTKLKYLSLWIAVGELLNpirlaglencpileEIQIKVVGdcrnqqkpvfmaefglnslvnypqlsrmhfdcgdaigfaltaprgyadlSLWERFYLNGienlnlkelnywppqdmdvhqrslslpaagLLSQCRSLRKLFIHGTANEHFMSFFlkiptlrdvqlredyypapendttsemrvDSCYRFQDalnrrhipd

maattvskvpnfhdilpDAIMSNIFSLITDTRTRNAMSLVCLKWCKLERSTRKSLALRGNIRDLNQVPVCFQAINNLDLSCLSPWGHPLLESSSNPSLLAKLLSHAFPSVVSLTIYARSPLTLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTalssnssradpnnNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALEllnskcprlkSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEirgesssssheacgFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGTANEHFMSFFLKIPTLRDVQLREDYYpapendttsemrvdSCYRFqdalnrrhipd

MAATTVSKVPNFHDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLERSTRKSLALRGNIRDLNQVPVCFQAINNLDLSCLSPWGHpllesssnpsllAKLLSHAFPSVVSLTIYARSPLTLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMseeeaslkkkakCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGTANEHFMSFFLKIPTLRDVQLREDYYPAPENDTTSEMRVDSCYRFQDALNRRHIPD

********VPNFHDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLERSTRKSLALRGNIRDLNQVPVCFQAINNLDLSCLSPWGHPLLESSSNPSLLAKLLSHAFPSVVSLTIYARSPLTLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGFVGDETLLSIASNCPRLSLLHLA******************************TALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVE*********************************************CCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGTANEHFMSFFLKIPTLRDVQLREDYY***************CYRF***********

*********PNFHDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLERSTRKSLALRGNIRDLNQVPVCFQAINNLDLSCLSPWGHPLLESSSNPSLLAKLLSHAFPSVVSLTIYARSPLTLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGTANEHFMSFFLKIPTLRDVQLREDYYPAPENDTTSEMRVDSCYRFQDALNRR****

MAATTVSKVPNFHDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLERSTRKSLALRGNIRDLNQVPVCFQAINNLDLSCLSPWGHPLLESSSNPSLLAKLLSHAFPSVVSLTIYARSPLTLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADST*************NDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQY****************ACGFKDFQTEKRIMMSE*********KCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGTANEHFMSFFLKIPTLRDVQLREDYYPAPENDTTSEMRVDSCYRFQDALNRRHIPD

*******KVPNFHDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLERSTRKSLALRGNIRDLNQVPVCFQAINNLDLSCLSPWGHPLLESSSNPSLLAKLLSHAFPSVVSLTIYARSPLTLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEI*********EACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGTANEHFMSFFLKIPTLRDVQLREDYYPAPEN**TSEMRVDSCYRFQDALNRR****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		714	2.2.26 [Sep-21-2011]
Q9SIM9		693	F-box protein ORE9 OS=Ara	yes	no	0.955	0.984	0.536	0.0
Q5VMP0		720	F-box/LRR-repeat MAX2 hom	yes	no	0.931	0.923	0.439	1e-164
Q9SKK0		628	EIN3-binding F-box protei	no	no	0.215	0.245	0.288	3e-05
C8V4D4		585	SCF E3 ubiquitin ligase c	no	no	0.280	0.341	0.232	4e-05
P34284		466	Uncharacterized F-box/LRR	yes	no	0.152	0.233	0.322	6e-05
Q9FE83		527	F-box protein SKIP2 OS=Ar	no	no	0.079	0.108	0.396	0.0006
Q9SN10		522	F-box/LRR-repeat protein	no	no	0.079	0.109	0.396	0.0008

>sp\|Q9SIM9\|ORE9_ARATH F-box protein ORE9 OS=Arabidopsis thaliana GN=ORE9 PE=1 SV=2	Back alignment and function desciption

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/725 (53%), Positives = 493/725 (68%), Gaps = 43/725 (5%)

Query: 1   MAATTVSKVPNFHDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLERSTRKSLALRGN 60
           MA+TT+S        LPD I+S I SL++D+R RN++SLV  K+  LERSTR  L +RGN
Sbjct: 1   MASTTLSD-------LPDVILSTISSLVSDSRARNSLSLVSHKFLALERSTRSHLTIRGN 53

Query: 61  IRDLNQVPVCFQAINNLDLSCLSPWGHPLLES--SSNPSLLAKLLSHAFPSVVSLTIYAR 118
            RDL+ VP CF++I++LDLS LSPWGH LL S    + +LLA  L   FP V SL +Y R
Sbjct: 54  ARDLSLVPDCFRSISHLDLSFLSPWGHTLLASLPIDHQNLLALRLKFCFPFVESLNVYTR 113

Query: 119 SPLTLHFLAPEWPKLSHVKLVRWHQRFNA-PIGYDFFALFEHCPS-LSSIDLSHFYCWTE 176
           SP +L  L P+WP++ H+KL+RWHQR +  P G DF  +FEHC   L S+DLS+FY WTE
Sbjct: 114 SPSSLELLLPQWPRIRHIKLLRWHQRASQIPTGGDFVPIFEHCGGFLESLDLSNFYHWTE 173

Query: 177 DLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFL 236
           DLP     Y  +AA L+ L+LL   SFTEGYKS E++SIT +CPNL      C FD R+ 
Sbjct: 174 DLPPVLLRYADVAARLTRLDLLTA-SFTEGYKSSEIVSITKSCPNLKTFRVACTFDPRYF 232

Query: 237 GFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDF 296
            FVGDETL ++A++ P+L+LLH+ D+ +L++   RA P     G  + D+ ++   L + 
Sbjct: 233 EFVGDETLSAVATSSPKLTLLHMVDTASLAN--PRAIP-----GTEAGDSAVTAGTLIEV 285

Query: 297 FESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGIC-----REIDSSMP 351
           F  LP LEELVLDVG +V+ +  ALE LNSKC +L+ LKLGQ  G+C     R +D    
Sbjct: 286 FSGLPNLEELVLDVGKDVKHSGVALEALNSKCKKLRVLKLGQFQGVCSATEWRRLD---- 341

Query: 352 AAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLE 411
             GVAL  GL+SLSIKNS DLTD  L+AI  GC  LT FE+QGC  +T  G++    +  
Sbjct: 342 --GVALCGGLQSLSIKNSGDLTDMGLVAIGRGCCKLTTFEIQGCENVTVDGLRTMVSLRS 399

Query: 412 KTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRG--ESSSS 469
           KTL DVRIS CK L+T  SL+A+EPI DRI+RLH+DCVW      S+D E+ G  E+S +
Sbjct: 400 KTLTDVRISCCKNLDTAASLKAIEPICDRIKRLHIDCVWSG----SEDEEVEGRVETSEA 455

Query: 470 SHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGE 529
            HE       +++KR   S EE        C     NGF S    W KL+YLSLWI VGE
Sbjct: 456 DHEEEDDGYERSQKRCKYSFEEE------HCSTSDVNGFCSEDRVWEKLEYLSLWINVGE 509

Query: 530 LLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDA 589
            L P+ + GL++CP LEEI+IK+ GDCR +++P    EFGL+ L  YP+LS+M  DCGD 
Sbjct: 510 FLTPLPMTGLDDCPNLEEIRIKIEGDCRGKRRPA-EPEFGLSCLALYPKLSKMQLDCGDT 568

Query: 590 IGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCR 649
           IGFALTAP    DLSLWERF+L GI +L+L EL+YWPPQD DV+QRSLSLP AGLL +C 
Sbjct: 569 IGFALTAPPMQMDLSLWERFFLTGIGSLSLSELDYWPPQDRDVNQRSLSLPGAGLLQECL 628

Query: 650 SLRKLFIHGTANEHFMSFFLKIPTLRDVQLREDYYPAPENDTTSEMRVDSCYRFQDALNR 709
           +LRKLFIHGTA+EHFM+F L+IP LRDVQLR DYYPAPEND ++EMRV SC RF+D LN 
Sbjct: 629 TLRKLFIHGTAHEHFMNFLLRIPNLRDVQLRADYYPAPENDMSTEMRVGSCSRFEDQLNS 688

Query: 710 RHIPD 714
           R+I D
Sbjct: 689 RNIID 693

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Promotes the senescence. Contributes to the selective repression of axillary shoots and moderates the branching by regulating negatively the auxin transport in primary stems, in an AXR1-independent manner.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q5VMP0\|MAX2_ORYSJ F-box/LRR-repeat MAX2 homolog OS=Oryza sativa subsp. japonica GN=D3 PE=2 SV=2	Back alignment and function description

>sp\|Q9SKK0\|EBF1_ARATH EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1	Back alignment and function description

>sp\|C8V4D4\|GRRA_EMENI SCF E3 ubiquitin ligase complex F-box protein grrA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=grrA PE=2 SV=1	Back alignment and function description

>sp\|P34284\|YKK7_CAEEL Uncharacterized F-box/LRR-repeat protein C02F5.7 OS=Caenorhabditis elegans GN=C02F5.7 PE=4 SV=3	Back alignment and function description

>sp\|Q9FE83\|SKIP2_ARATH F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKIP2 PE=1 SV=1	Back alignment and function description

>sp\|Q9SN10\|FBL16_ARATH F-box/LRR-repeat protein 16 OS=Arabidopsis thaliana GN=FBL16 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		714
224116888		671	predicted protein [Populus trichocarpa]	0.927	0.986	0.650	0.0
147810398		712	hypothetical protein VITISV_001981 [Viti	0.960	0.963	0.586	0.0
302143426		696	unnamed protein product [Vitis vinifera]	0.948	0.972	0.591	0.0
329739343		708	MAX2A [Petunia x hybrida]	0.960	0.968	0.584	0.0
255575295		695	F-box/leucine rich repeat protein, putat	0.960	0.987	0.569	0.0
224128748		694	f-box family protein [Populus trichocarp	0.949	0.976	0.574	0.0
329739345		723	MAX2B [Petunia x hybrida]	0.964	0.952	0.556	0.0
449479133		715	PREDICTED: F-box protein ORE9-like [Cucu	0.959	0.958	0.550	0.0
449438510		715	PREDICTED: F-box protein ORE9-like [Cucu	0.959	0.958	0.552	0.0
429535895		682	F-box protein MAX2c [Chrysanthemum x mor	0.938	0.982	0.550	0.0

>gi\|224116888\|ref\|XP_002317419.1\| predicted protein [Populus trichocarpa] gi\|222860484\|gb\|EEE98031.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/704 (65%), Positives = 549/704 (77%), Gaps = 42/704 (5%)

Query: 11  NFHDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLERSTRKSLALRGNIRDLNQVPVC 70
           +FHDI PDAI+S+IFSLITDTR+RNAMSLVCLKW  +ERSTR  L+LRGNIRDL  +P C
Sbjct: 10  HFHDI-PDAILSSIFSLITDTRSRNAMSLVCLKWHLIERSTRTCLSLRGNIRDLFLLPTC 68

Query: 71  FQAINNLDLSCLSPWGHPLLESSSNPSLLAKLLSHAFPSVVSLTIYARSPLTLHFLAPEW 130
           F+A++NLDLS +SPWG P+L+SS N +LLA++L   FPSVV+LT+YAR+P  LH LAP+W
Sbjct: 69  FRAVSNLDLSLVSPWGRPILDSSPNTTLLAQVLHCTFPSVVTLTVYARNPSILHLLAPQW 128

Query: 131 PKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAA 190
           P L  +KLVRWH+R    +G DF ALFEHC SL+S+DLSHFYCWTEDLP A E YPSIAA
Sbjct: 129 PNLRQIKLVRWHKRSPTTLGSDFLALFEHCHSLASLDLSHFYCWTEDLPPALEAYPSIAA 188

Query: 191 SLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGFVGDETLLSIASN 250
           SLSHLN+L   S  +G+KSHE+L+ITSACPNL + LA C+FDHR++GFVGDETLLS+A+N
Sbjct: 189 SLSHLNILNYTSSDQGFKSHEILAITSACPNLREFLAACIFDHRYIGFVGDETLLSLATN 248

Query: 251 CPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDV 310
           CPRLSLLHL DS++LS  ++R DP+N  +GY +EDARI  T L + F +LPLLEELVLDV
Sbjct: 249 CPRLSLLHLVDSSSLS--AARGDPDN--DGYTTEDARIRQTMLIEMFSALPLLEELVLDV 304

Query: 311 GNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSA 370
            +NVRDTW ALE+LNSKCPRLKSLKLGQ HGIC+ ID+     G+AL   LESLSIKN A
Sbjct: 305 CHNVRDTWVALEMLNSKCPRLKSLKLGQFHGICKGIDAR--PDGIALCSRLESLSIKNCA 362

Query: 371 DLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCS 430
           DLTDS LI+ISLGC  LTK                      KTL +V+IS CK+LNTV S
Sbjct: 363 DLTDSGLISISLGCPRLTK----------------------KTLTEVKISCCKHLNTVTS 400

Query: 431 LQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEE 490
           LQALEPIRD +QRLH+DCVWE VEQ        G  ++SS +  GFK     + I    E
Sbjct: 401 LQALEPIRDCLQRLHIDCVWEMVEQ-------SGSEATSSAKYDGFKCSDKRRGIW---E 450

Query: 491 EASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQI 550
           +A+LKKK K  + + NG++  S  W KL+ LSLWI VGELLNP+ LAGL+NCP+LEEIQI
Sbjct: 451 DANLKKKYKKYNDNENGYA--SSNWAKLQCLSLWIPVGELLNPLVLAGLDNCPMLEEIQI 508

Query: 551 KVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFY 610
           KV GDCR+Q + +    FGL+SL+ YP+LS+MH DC  AIG+ALTAP G+ DLS WERFY
Sbjct: 509 KVEGDCRHQSR-LSPDGFGLSSLLCYPRLSKMHIDCQAAIGYALTAPSGHVDLSPWERFY 567

Query: 611 LNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGTANEHFMSFFLK 670
           LNGI  LNL ELNYWPPQD+D ++RSLSLPAAGLL+QCR++RKLF+HGTANEHFM F LK
Sbjct: 568 LNGIGRLNLTELNYWPPQDIDYNKRSLSLPAAGLLAQCRTMRKLFVHGTANEHFMMFLLK 627

Query: 671 IPTLRDVQLREDYYPAPENDTTSEMRVDSCYRFQDALNRRHIPD 714
           + TLRDVQLREDYYPAPEND ++EMR+DSC RF+DALNRR IPD
Sbjct: 628 VQTLRDVQLREDYYPAPENDNSTEMRIDSCSRFEDALNRRAIPD 671

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|147810398\|emb\|CAN59822.1\| hypothetical protein VITISV_001981 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|302143426\|emb\|CBI21987.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|329739343\|gb\|AEB97384.1\| MAX2A [Petunia x hybrida]	Back alignment and taxonomy information

>gi\|255575295\|ref\|XP_002528551.1\| F-box/leucine rich repeat protein, putative [Ricinus communis] gi\|223532053\|gb\|EEF33863.1\| F-box/leucine rich repeat protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224128748\|ref\|XP_002320412.1\| f-box family protein [Populus trichocarpa] gi\|222861185\|gb\|EEE98727.1\| f-box family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|329739345\|gb\|AEB97385.1\| MAX2B [Petunia x hybrida]	Back alignment and taxonomy information

>gi\|449479133\|ref\|XP_004155515.1\| PREDICTED: F-box protein ORE9-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449438510\|ref\|XP_004137031.1\| PREDICTED: F-box protein ORE9-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|429535895\|gb\|AFZ99010.1\| F-box protein MAX2c [Chrysanthemum x morifolium]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		714
UNIPROTKB\|Q5VMP0		720	D3 "F-box/LRR-repeat MAX2 homo	0.477	0.473	0.441	4.3e-153
TAIR\|locus:2041499		693	MAX2 "AT2G42620" [Arabidopsis	0.913	0.940	0.465	1.1e-149
UNIPROTKB\|A9TAY1		567	TIRB2 "TIRB2 TIR1-like auxin r	0.284	0.358	0.227	2.3e-07
UNIPROTKB\|A9SYG2		570	TIRB1 "TIR1-like auxin recepto	0.063	0.078	0.326	7.6e-07
ASPGD\|ASPL0000017608		585	grrA [Emericella nidulans (tax	0.336	0.410	0.242	1.7e-06
TAIR\|locus:2040105		628	EBF1 "AT2G25490" [Arabidopsis	0.207	0.235	0.289	1.9e-06
TAIR\|locus:2083143		522	VFB2 "AT3G50080" [Arabidopsis	0.274	0.375	0.261	5e-06
UNIPROTKB\|B9GFH2		571	FBL3 "F-box family protein" [P	0.060	0.075	0.386	5.5e-06
TAIR\|locus:2155578		527	SKIP2 "AT5G67250" [Arabidopsis	0.079	0.108	0.396	5.7e-06
CGD\|CAL0002979		780	GRR1 [Candida albicans (taxid:	0.329	0.301	0.248	6e-06

UNIPROTKB\|Q5VMP0 D3 "F-box/LRR-repeat MAX2 homolog" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

 Score = 737 (264.5 bits), Expect = 4.3e-153, Sum P(3) = 4.3e-153
 Identities = 158/358 (44%), Positives = 219/358 (61%)

Query:   100 AKLLSHAFPSVVSLTIYARSPLTLHFLAPEWP-KLSHVKLVRWHQRF-NAPIGYDFFALF 157
             A  L+  FP+V SL +Y R P TL  L P W   L  VKLVRWHQR    P G D   L 
Sbjct:   136 AARLAGCFPAVTSLAVYCRDPTTLANLTPHWQASLRRVKLVRWHQRPPTLPDGADLEPLL 195

Query:   158 EHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITS 217
             E C +L  +DLS FYCWTED+  A   +PS  A+L+HL+L +  + T+G+KS EL  I +
Sbjct:   196 ETCAALRELDLSEFYCWTEDVVRALTTHPSATAALTHLDLGLAAA-TDGFKSSELGPIAA 254

Query:   218 ACPNLSQLLATCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNN 277
             +CPNL +L+A C+F+ RF   VGD+ LLS+A++CPRL++L L++    ++N  R      
Sbjct:   255 SCPNLRKLVAPCLFNPRFSDCVGDDALLSLATSCPRLTVLRLSEPFEAAANIQR------ 308

Query:   278 DEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLG 337
                   E+A I+   L  FF +LP LE+  +D+ +NV +  PA+E L  +CPR+K L LG
Sbjct:   309 ------EEAAITVAGLVAFFAALPALEDFTMDLQHNVLEAAPAMEALARRCPRIKFLTLG 362

Query:   338 QVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNK 397
                G+C+   S +   GVA+  GLESL +KN  DLTD++L AI  GC  L KF + GC+ 
Sbjct:   363 SFQGLCKA--SWLHLDGVAVCGGLESLYMKNCQDLTDASLAAIGRGCRRLAKFGIHGCDL 420

Query:   398 ITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQ 455
             +T  G++  A  L  TL +V +  C+ L+T   L AL PIRDRI+ L ++CVW + EQ
Sbjct:   421 VTSAGIRRLAFTLRPTLKEVTVLHCRLLHTAECLTALSPIRDRIESLEINCVWNTTEQ 478

GO:0007275 "multicellular organismal development" evidence=IMP

TAIR\|locus:2041499 MAX2 "AT2G42620" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|A9TAY1 TIRB2 "TIRB2 TIR1-like auxin receptor protein" [Physcomitrella patens subsp. patens (taxid:145481)]	Back alignment and assigned GO terms

UNIPROTKB\|A9SYG2 TIRB1 "TIR1-like auxin receptor" [Physcomitrella patens subsp. patens (taxid:145481)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000017608 grrA [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

TAIR\|locus:2040105 EBF1 "AT2G25490" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2083143 VFB2 "AT3G50080" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|B9GFH2 FBL3 "F-box family protein" [Populus trichocarpa (taxid:3694)]	Back alignment and assigned GO terms

TAIR\|locus:2155578 SKIP2 "AT5G67250" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

CGD\|CAL0002979 GRR1 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SIM9	ORE9_ARATH	No assigned EC number	0.5365	0.9551	0.9841	yes	no
Q5VMP0	MAX2_ORYSJ	No assigned EC number	0.4394	0.9313	0.9236	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_XI000792	hypothetical protein (671 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		714
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	3e-04

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 31/130 (23%)

Query: 298 ESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREI-DSSMPAAG-- 354
           +S P L+ L L    N+ D+   +  L + CP+L+++ LG+ H     I D S+ A G  
Sbjct: 75  QSCPNLQVLDLRACENITDS--GIVALATNCPKLQTINLGR-HRNGHLITDVSLSALGKN 131

Query: 355 ----------------VALW-------KGLESLSIKNSADLTDSALIAI--SLGCSNLTK 389
                             +W       K LE LS+ N  +LTD ++ AI  S    NL+ 
Sbjct: 132 CTFLQTVGFAGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSV 191

Query: 390 FEVQGCNKIT 399
            E +GC  IT
Sbjct: 192 LEFRGCPLIT 201

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		714
KOG4341		483	consensus F-box protein containing LRR [General fu	99.96
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.89
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.86
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.86
KOG4341		483	consensus F-box protein containing LRR [General fu	99.86
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.49
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.48
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.47
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.45
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.43
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.43
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.41
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.24
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.23
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.22
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.16
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.07
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.02
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	98.84
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	98.77
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.66
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.64
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.55
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.45
PF12937		47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.45
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.43
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.15
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.0
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	97.95
PF00646		48	F-box: F-box domain; InterPro: IPR001810 The F-box	97.94
smart00256		41	FBOX A Receptor for Ubiquitination Targets.	97.94
KOG3864		221	consensus Uncharacterized conserved protein [Funct	97.91
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.83
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	97.83
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	97.77
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	97.77
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.7
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.63
KOG2982		418	consensus Uncharacterized conserved protein [Funct	97.44
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.27
KOG3864		221	consensus Uncharacterized conserved protein [Funct	97.17
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.08
KOG2982		418	consensus Uncharacterized conserved protein [Funct	96.87
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	96.82
PLN03150		623	hypothetical protein; Provisional	96.79
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	96.71
PLN03150		623	hypothetical protein; Provisional	96.71
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	96.56
KOG4237		498	consensus Extracellular matrix protein slit, conta	96.51
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.27
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.27
KOG4237		498	consensus Extracellular matrix protein slit, conta	96.06
KOG0617		264	consensus Ras suppressor protein (contains leucine	96.05
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	95.97
PRK15386		426	type III secretion protein GogB; Provisional	95.58
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	95.54
PRK15386		426	type III secretion protein GogB; Provisional	95.41
KOG2123		388	consensus Uncharacterized conserved protein [Funct	95.14
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	94.88
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	94.79
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	94.76
KOG2123		388	consensus Uncharacterized conserved protein [Funct	93.53
KOG2997		366	consensus F-box protein FBX9 [General function pre	93.27
PLN03215		373	ascorbic acid mannose pathway regulator 1; Provisi	93.01
KOG4308		478	consensus LRR-containing protein [Function unknown	92.42
KOG4308		478	consensus LRR-containing protein [Function unknown	92.32
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	91.84
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	91.84
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	91.22
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.98
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	90.24
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	89.94
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	89.37
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	89.2
PF13013		109	F-box-like_2: F-box-like domain	88.88
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.53

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

Probab=99.96  E-value=9.7e-30  Score=259.52  Aligned_cols=365  Identities=21%  Similarity=0.326  Sum_probs=292.3

Q ss_pred             CCCcHHHHHHHhhcCCChhhhHHHHHHhHHHHHhH--hccccEEEEecccccccccccccCcceeeeccccCCCCCCccc
Q 044164           14 DILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLE--RSTRKSLALRGNIRDLNQVPVCFQAINNLDLSCLSPWGHPLLE   91 (714)
Q Consensus        14 ~~LPdeiL~~Ifs~L~~~~dl~~~slVCkrW~~~~--~~~~~~L~l~~~~~~l~~l~~~f~~L~~L~Ls~~~~~~~~~l~   91 (714)
                      ..||+|++.+||+|| +++.+++++.||+-|+..+  ...|..+.+-           .|+    .|.            
T Consensus        73 ~~LPpEl~lkvFS~L-Dtksl~r~a~~c~~~n~~AlD~~~~q~idL~-----------t~~----rDv------------  124 (483)
T KOG4341|consen   73 RSLPPELLLKVFSML-DTKSLCRAAQCCTMWNKLALDGSCWQHIDLF-----------TFQ----RDV------------  124 (483)
T ss_pred             ccCCHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhhccccceeeehh-----------cch----hcC------------
Confidence            459999999999999 9999999999999999954  2234333331           110    000            


Q ss_pred             cCCCchhHHHHHhhhCCCeeEEEEeecC---hhhHHHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEe
Q 044164           92 SSSNPSLLAKLLSHAFPSVVSLTIYARS---PLTLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDL  168 (714)
Q Consensus        92 ~~~~~~l~~~~L~~~~p~L~~L~l~~~~---~~~l~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L  168 (714)
                         +...+...+.+....+++|.++++.   ...+..+...||++++|.+.+|..+    ++..+..+...|++|+.|++
T Consensus       125 ---~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~i----Td~s~~sla~~C~~l~~l~L  197 (483)
T KOG4341|consen  125 ---DGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKI----TDSSLLSLARYCRKLRHLNL  197 (483)
T ss_pred             ---CCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceec----cHHHHHHHHHhcchhhhhhh
Confidence               1122233344445678999999764   3467778889999999999999866    48888899999999999999


Q ss_pred             cCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeecccccccccCHHHHHHH
Q 044164          169 SHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRFLGFVGDETLLSI  247 (714)
Q Consensus       169 s~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i~~~~l~~l  247 (714)
                      ..|..+++....   .+...|++|++|+++    ||..++..++..+..+|.+++++.. +|.       ..+++.+..+
T Consensus       198 ~~c~~iT~~~Lk---~la~gC~kL~~lNlS----wc~qi~~~gv~~~~rG~~~l~~~~~kGC~-------e~~le~l~~~  263 (483)
T KOG4341|consen  198 HSCSSITDVSLK---YLAEGCRKLKYLNLS----WCPQISGNGVQALQRGCKELEKLSLKGCL-------ELELEALLKA  263 (483)
T ss_pred             cccchhHHHHHH---HHHHhhhhHHHhhhc----cCchhhcCcchHHhccchhhhhhhhcccc-------cccHHHHHHH
Confidence            998877765444   355578899999999    5888999999999999999999988 777       8999999999


Q ss_pred             HhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCChHHHHHHhcc
Q 044164          248 ASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSK  327 (714)
Q Consensus       248 ~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~  327 (714)
                      +..|+-+..+++.+|                       ..+||.++..+..+|..|+.|+.++|..+++..  +.++.++
T Consensus       264 ~~~~~~i~~lnl~~c-----------------------~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~--l~aLg~~  318 (483)
T KOG4341|consen  264 AAYCLEILKLNLQHC-----------------------NQLTDEDLWLIACGCHALQVLCYSSCTDITDEV--LWALGQH  318 (483)
T ss_pred             hccChHhhccchhhh-----------------------ccccchHHHHHhhhhhHhhhhcccCCCCCchHH--HHHHhcC
Confidence            989998999988888                       456788888888899999999999999887764  7788899


Q ss_pred             CCCccEEEeccccCccccCCCcchHHHh-cCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHH
Q 044164          328 CPRLKSLKLGQVHGICREIDSSMPAAGV-ALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIF  406 (714)
Q Consensus       328 ~~~L~~L~L~~~~~~c~~i~~~~~l~~l-~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l  406 (714)
                      +++|+.|.+..|    ...++.+ +..+ .+|+.|+.+++..|..++|..+.+++.+||.|+.|.++.|..+||+|+..+
T Consensus       319 ~~~L~~l~l~~c----~~fsd~~-ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l  393 (483)
T KOG4341|consen  319 CHNLQVLELSGC----QQFSDRG-FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL  393 (483)
T ss_pred             CCceEEEecccc----chhhhhh-hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence            999999999994    4455543 3344 488999999999999899999999999999999999999999999998887


Q ss_pred             HHHc--CCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEE-ecccccccccchh
Q 044164          407 ARVL--EKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHV-DCVWESVEQYSQD  459 (714)
Q Consensus       407 ~~~~--~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l-~C~~~~~~~~~~l  459 (714)
                      ...-  ...|+.+.+++|+.+ ++..+..+. .|++|+++++ +|..++.+....+
T Consensus       394 ~~~~c~~~~l~~lEL~n~p~i-~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~~  447 (483)
T KOG4341|consen  394 SSSSCSLEGLEVLELDNCPLI-TDATLEHLS-ICRNLERIELIDCQDVTKEAISRF  447 (483)
T ss_pred             hhccccccccceeeecCCCCc-hHHHHHHHh-hCcccceeeeechhhhhhhhhHHH
Confidence            6511  268999999999988 666666665 5789999999 8998776655443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]	Back alignment and domain information

>smart00256 FBOX A Receptor for Ubiquitination Targets	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2997 consensus F-box protein FBX9 [General function prediction only]	Back alignment and domain information

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>PF13013 F-box-like_2: F-box-like domain	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		714
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	4e-31
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	9e-28
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-19
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	8e-13
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	5e-12
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	1e-10
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	1e-09
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	9e-06

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

 Score =  128 bits (322), Expect = 4e-31
 Identities = 80/429 (18%), Positives = 147/429 (34%), Gaps = 50/429 (11%)

Query: 16  LPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLERSTRKSLALRG-NIRDLNQVPVCFQAI 74
            P+ ++ ++FS I   + RN++SLVC  W ++ER  R+ + +          V   F  +
Sbjct: 9   FPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKV 68

Query: 75  NNLDLSC---LSPWGHPLLESSSNPSLLAKLLSHAFPSVVSLTIYARSPLT---LHFLAP 128
            +++L      + +               + +S ++  +  + +  R  +T   L  +A 
Sbjct: 69  RSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLK-RMVVTDDCLELIAK 127

Query: 129 EWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSI 188
            +     + L          +     A+   C +L  +DL       +        +P  
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGL----AAIAATCRNLKELDLRESDV-DDVSGHWLSHFPDT 182

Query: 189 AASLSHLNLLVGHSFTEGYKSHE-LLSITSACPNLSQLLATCVFDHRFLGFVGDETLLSI 247
             SL  LN+    S      S   L  + + CPNL  L        +    V  E L ++
Sbjct: 183 YTSLVSLNI----SCLASEVSFSALERLVTRCPNLKSL--------KLNRAVPLEKLATL 230

Query: 248 ASNCPRLSLLHLADSTALSSNSSRADPNNNDEG-----YASEDARISPTALGDFFESLPL 302
               P+L  L     TA       +  +    G       S      P  L   +     
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290

Query: 303 LEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLE 362
           L  L L     V+     L  L  +CP+L+ L +         I+ +      +  K L 
Sbjct: 291 LTTLNLS-YATVQS--YDLVKLLCQCPKLQRLWV------LDYIEDAGLEVLASTCKDLR 341

Query: 363 SLSIKNS--------ADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTL 414
            L +  S          LT+  L+++S+GC  L    +  C ++T   +   AR     +
Sbjct: 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPN-M 399

Query: 415 VDVRISSCK 423
              R+   +
Sbjct: 400 TRFRLCIIE 408

PyMOL of 2p1m

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		714
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	100.0
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	99.93
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.92
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.91
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.9
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.86
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.85
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.84
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.83
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.82
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.8
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.78
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.78
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.77
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.76
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.76
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.75
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.74
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.74
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.74
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.74
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.73
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.73
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.73
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.72
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.72
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.71
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.7
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.69
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.67
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.66
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.63
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.63
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.6
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.6
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.59
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.58
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.54
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.52
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.51
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.5
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.5
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.49
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.49
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.48
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.48
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.46
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.46
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.45
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.44
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.4
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.3
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.3
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.29
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.29
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.29
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.29
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.29
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.27
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.25
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.22
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.22
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.22
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.21
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.21
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.2
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.18
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.18
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.17
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.15
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.14
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.14
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.09
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.08
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.05
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.03
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.02
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.0
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.0
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	98.95
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	98.92
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	98.89
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	98.89
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	98.84
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	98.84
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	98.83
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	98.82
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.8
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	98.79
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	98.76
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	98.75
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	98.73
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.65
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.65
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.64
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	98.55
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	98.54
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	98.54
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.52
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	98.5
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	98.47
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	98.46
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	98.46
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.45
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.41
1fs1_A		53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.4
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.32
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.31
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.3
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.27
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.25
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.25
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	98.25
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.24
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.22
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.19
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.19
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.18
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.17
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.17
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.11
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.09
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.05
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.03
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	98.02
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.94
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	97.88
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.85
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	97.85
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.85
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	97.84
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	97.83
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	97.8
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.74
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.74
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.71
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.7
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.65
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.62
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	97.6
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.55
2e31_A		297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.41
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	97.27
3l2o_B		312	F-box only protein 4; small G protein fold, UBL co	97.26
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.23
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.14
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	96.8
3v7d_B		464	Cell division control protein 4; WD 40 domain, pho	96.58
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.5
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	96.39
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	96.38
1p22_A		435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.26
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	96.22
2ovr_B		445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.14
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	95.91
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	95.89
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	95.65
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	95.28
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	94.05

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

Probab=100.00  E-value=1e-34  Score=334.01  Aligned_cols=480  Identities=18%  Similarity=0.257  Sum_probs=313.6

Q ss_pred             CCcCCCcHHHHHHHhhcCCChhhhHHHHHHhHHHHHhHhccccEEEEecccc-cccccccccCcceeeeccccCCCC-CC
Q 044164           11 NFHDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLERSTRKSLALRGNIR-DLNQVPVCFQAINNLDLSCLSPWG-HP   88 (714)
Q Consensus        11 ~~~~~LPdeiL~~Ifs~L~~~~dl~~~slVCkrW~~~~~~~~~~L~l~~~~~-~l~~l~~~f~~L~~L~Ls~~~~~~-~~   88 (714)
                      .+++ ||||||.+||+||+..+|+.++++|||+|+++....++.+.+..+.. ....+..+|+++++|+++...... ..
T Consensus         5 ~~~~-LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~   83 (594)
T 2p1m_B            5 IALS-FPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFN   83 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGT
T ss_pred             chhh-CCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcc
Confidence            3447 99999999999994499999999999999999888888888855432 223445678999999997532110 00


Q ss_pred             ccccCCCchhHHHH---HhhhCCCeeEEEEeec--ChhhHHHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCCCC
Q 044164           89 LLESSSNPSLLAKL---LSHAFPSVVSLTIYAR--SPLTLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSL  163 (714)
Q Consensus        89 ~l~~~~~~~l~~~~---L~~~~p~L~~L~l~~~--~~~~l~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L  163 (714)
                      ..+. .....+..|   +...+++|++|++++.  ....+..+...+++|++|++.+|....    +..+..+..+|++|
T Consensus        84 l~~~-~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~----~~~l~~~~~~~~~L  158 (594)
T 2p1m_B           84 LVPD-GWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS----TDGLAAIAATCRNL  158 (594)
T ss_dssp             CSCT-TSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE----HHHHHHHHHHCTTC
T ss_pred             cccc-cccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC----HHHHHHHHHhCCCC
Confidence            0000 000111222   3467899999999864  445567776679999999999986443    56677888899999


Q ss_pred             ceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeecccccccccCHH
Q 044164          164 SSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRFLGFVGDE  242 (714)
Q Consensus       164 ~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i~~~  242 (714)
                      ++|+|++|... +..+..+..++..+++|++|++++|.   ..++...+..+..++++|++|++ +|.       .+  .
T Consensus       159 ~~L~L~~~~i~-~~~~~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~l~~l~~~~~~L~~L~L~~~~-------~~--~  225 (594)
T 2p1m_B          159 KELDLRESDVD-DVSGHWLSHFPDTYTSLVSLNISCLA---SEVSFSALERLVTRCPNLKSLKLNRAV-------PL--E  225 (594)
T ss_dssp             CEEECTTCEEE-CCCGGGGGGSCTTCCCCCEEECTTCC---SCCCHHHHHHHHHHCTTCCEEECCTTS-------CH--H
T ss_pred             CEEeCcCCccC-CcchHHHHHHhhcCCcCcEEEecccC---CcCCHHHHHHHHHhCCCCcEEecCCCC-------cH--H
Confidence            99999999843 33344455566677899999999732   35778899999999999999999 553       23  2


Q ss_pred             HHHHHHhhCCCCceEEeccccC-cCC-----C--CCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCc
Q 044164          243 TLLSIASNCPRLSLLHLADSTA-LSS-----N--SSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNV  314 (714)
Q Consensus       243 ~l~~l~~~~~~L~~L~L~~c~~-l~~-----~--~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l  314 (714)
                      .+..+...+++|++|++..|.. +..     .  .+...+  .+..+. ....++...+..+...+++|++|++++|. +
T Consensus       226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~--~L~~Ls-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l  301 (594)
T 2p1m_B          226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK--ELRCLS-GFWDAVPAYLPAVYSVCSRLTTLNLSYAT-V  301 (594)
T ss_dssp             HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCT--TCCEEE-CCBTCCGGGGGGGHHHHTTCCEEECTTCC-C
T ss_pred             HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCC--Cccccc-CCcccchhhHHHHHHhhCCCCEEEccCCC-C
Confidence            3677778999999999765531 000     0  000000  000000 00123344455555567888888888886 5


Q ss_pred             CCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHh-cCCcCcceeee--------ecCCCCCHHHHHHHHhcCC
Q 044164          315 RDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGV-ALWKGLESLSI--------KNSADLTDSALIAISLGCS  385 (714)
Q Consensus       315 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l-~~~~~L~~L~L--------~~c~~ltd~~l~~l~~~~~  385 (714)
                      ++  ..+..+...+++|++|++.++      +++.+ +..+ ..|++|++|+|        ..|..+++.++..++.+|+
T Consensus       302 ~~--~~l~~~~~~~~~L~~L~l~~~------~~~~~-l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~  372 (594)
T 2p1m_B          302 QS--YDLVKLLCQCPKLQRLWVLDY------IEDAG-LEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP  372 (594)
T ss_dssp             CH--HHHHHHHTTCTTCCEEEEEGG------GHHHH-HHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCT
T ss_pred             CH--HHHHHHHhcCCCcCEEeCcCc------cCHHH-HHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhch
Confidence            43  336666678888888888773      22222 2222 35888888888        3456788888888887788


Q ss_pred             CccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEee-----CCCCCCc---hhHHHHHHhcCCCCCEEEEecccccccccc
Q 044164          386 NLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRIS-----SCKYLNT---VCSLQALEPIRDRIQRLHVDCVWESVEQYS  457 (714)
Q Consensus       386 ~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~-----~C~~l~~---~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~  457 (714)
                      +|+.|.+ +|..+++.++..++..+ ++|+.|+++     +|..+..   +..+..+...+++|++|+++. .++..++.
T Consensus       373 ~L~~L~~-~~~~l~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~  449 (594)
T 2p1m_B          373 KLESVLY-FCRQMTNAALITIARNR-PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE  449 (594)
T ss_dssp             TCCEEEE-EESCCCHHHHHHHHHHC-TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred             hHHHHHH-hcCCcCHHHHHHHHhhC-CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence            8888855 45558888888888777 888888888     5667621   456666777788888888832 44443333


Q ss_pred             hhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhccccccccccc
Q 044164          458 QDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLA  537 (714)
Q Consensus       458 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~  537 (714)
                      .+.                                                    ..+++|+.|++.   ...++.....
T Consensus       450 ~l~----------------------------------------------------~~~~~L~~L~L~---~~~i~~~~~~  474 (594)
T 2p1m_B          450 YIG----------------------------------------------------TYAKKMEMLSVA---FAGDSDLGMH  474 (594)
T ss_dssp             HHH----------------------------------------------------HHCTTCCEEEEE---SCCSSHHHHH
T ss_pred             HHH----------------------------------------------------HhchhccEeecc---CCCCcHHHHH
Confidence            330                                                    125678888773   2222222111


Q ss_pred             CC-CCCCCcceEEEEEeccccCCCCccccccccccc-ccCCccccccccccCccc
Q 044164          538 GL-ENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNS-LVNYPQLSRMHFDCGDAI  590 (714)
Q Consensus       538 ~l-~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~-l~~~~~L~~~~l~~~~~~  590 (714)
                      .+ .+|++|+.|.|+   +|...       ..|+.. +..+++|+.++|+.|..+
T Consensus       475 ~l~~~~~~L~~L~L~---~n~~~-------~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          475 HVLSGCDSLRKLEIR---DCPFG-------DKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHHHCTTCCEEEEE---SCSCC-------HHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHhcCCCcCEEECc---CCCCc-------HHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            12 458889999985   34321       122222 345788899999888763

PyMOL of 2p1m

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		714
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.82
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.8
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.41
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.4
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.37
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.21
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.17
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.13
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.11
d1fs1a1		41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.81
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.8
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.73
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.72
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.64
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.57
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.51
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.48
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.45
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.38
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.36
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.35
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.33
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.31
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.23
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.21
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.2
d1nexb1		100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.14
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.14
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.13
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	98.07
d2ovrb1		102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.06
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	97.95
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.88
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	97.81
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.81
d1p22a1		118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.74
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.74
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	97.65
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.62
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.54
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	97.52
d2ifga3		156	High affinity nerve growth factor receptor, N-term	96.4
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.62
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.84
d2ifga3		156	High affinity nerve growth factor receptor, N-term	94.1

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.6e-20  Score=192.59  Aligned_cols=218  Identities=18%  Similarity=0.218  Sum_probs=155.7

Q ss_pred             CCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeecccccccccCHHHHHHHHhhCCCCceEEeccccCcCCCC
Q 044164          191 SLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNS  269 (714)
Q Consensus       191 ~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~  269 (714)
                      +|++|++++| .    +++..+..+..+|++|++|++ +|        .+++..+..++ .+++|++|++++|.      
T Consensus        47 ~L~~LdLs~~-~----i~~~~l~~l~~~c~~L~~L~L~~~--------~l~~~~~~~l~-~~~~L~~L~Ls~c~------  106 (284)
T d2astb2          47 RVQHMDLSNS-V----IEVSTLHGILSQCSKLQNLSLEGL--------RLSDPIVNTLA-KNSNLVRLNLSGCS------  106 (284)
T ss_dssp             CCCEEECTTC-E----ECHHHHHHHHTTBCCCSEEECTTC--------BCCHHHHHHHT-TCTTCSEEECTTCB------
T ss_pred             CCCEEECCCC-c----cCHHHHHHHHHhCCCccccccccc--------CCCcHHHHHHh-cCCCCcCccccccc------
Confidence            7888888762 2    667777788888888888888 44        36777777775 57888888888773      


Q ss_pred             CCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCc
Q 044164          270 SRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSS  349 (714)
Q Consensus       270 ~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~  349 (714)
                                       .+++.++..++.+|++|++|++++|.++++.+. ...+...+++|++|++.+|.   ..+++.
T Consensus       107 -----------------~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~-~~~~~~~~~~L~~L~l~~~~---~~i~~~  165 (284)
T d2astb2         107 -----------------GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV-QVAVAHVSETITQLNLSGYR---KNLQKS  165 (284)
T ss_dssp             -----------------SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH-HHHHHHSCTTCCEEECCSCG---GGSCHH
T ss_pred             -----------------cccccccchhhHHHHhccccccccccccccccc-hhhhcccccccchhhhcccc---cccccc
Confidence                             457778888888888888888888877765431 12344556788888887732   345554


Q ss_pred             chHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchh
Q 044164          350 MPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVC  429 (714)
Q Consensus       350 ~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~  429 (714)
                      +....+..|++|++|++++|..++|.++..+.+ +++|++|+|++|..+++.++..+.. + |+|+.|++++|  + ++.
T Consensus       166 ~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~-~~~L~~L~L~~C~~i~~~~l~~L~~-~-~~L~~L~l~~~--~-~d~  239 (284)
T d2astb2         166 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGE-I-PTLKTLQVFGI--V-PDG  239 (284)
T ss_dssp             HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTCTTCCGGGGGGGGG-C-TTCCEEECTTS--S-CTT
T ss_pred             cccccccccccccccccccccCCCchhhhhhcc-cCcCCEEECCCCCCCChHHHHHHhc-C-CCCCEEeeeCC--C-CHH
Confidence            322334578888888888888888888777764 7888888888888888888777654 5 88888888887  3 455


Q ss_pred             HHHHHHhcCCCCCEEEEecccccccccch
Q 044164          430 SLQALEPIRDRIQRLHVDCVWESVEQYSQ  458 (714)
Q Consensus       430 ~l~~l~~~~~~L~~L~l~C~~~~~~~~~~  458 (714)
                      .+..+...+|+|+   ++|...+....+.
T Consensus       240 ~l~~l~~~lp~L~---i~~~~ls~~~~~~  265 (284)
T d2astb2         240 TLQLLKEALPHLQ---INCSHFTTIARPT  265 (284)
T ss_dssp             CHHHHHHHSTTSE---ESCCCSCCTTCSS
T ss_pred             HHHHHHHhCcccc---ccCccCCCCCCCc
Confidence            6777777666654   5777765544443

PyMOL of d2astb2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure