Citrus Sinensis ID: 044169
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 742 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | yes | no | 0.791 | 0.676 | 0.362 | 1e-113 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.826 | 0.576 | 0.344 | 1e-111 | |
| Q9SVA5 | 834 | Pentatricopeptide repeat- | no | no | 0.785 | 0.699 | 0.357 | 1e-106 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.831 | 0.762 | 0.326 | 1e-106 | |
| Q9SI53 | 630 | Pentatricopeptide repeat- | no | no | 0.694 | 0.817 | 0.370 | 1e-105 | |
| Q9LIQ7 | 633 | Pentatricopeptide repeat- | no | no | 0.714 | 0.837 | 0.360 | 1e-105 | |
| Q9SMZ2 | 990 | Pentatricopeptide repeat- | no | no | 0.839 | 0.629 | 0.339 | 1e-103 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.807 | 0.859 | 0.316 | 1e-103 | |
| Q9LYU9 | 752 | Pentatricopeptide repeat- | no | no | 0.878 | 0.867 | 0.315 | 1e-102 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.811 | 0.867 | 0.316 | 1e-101 |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/607 (36%), Positives = 357/607 (58%), Gaps = 20/607 (3%)
Query: 136 GRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAK 195
G + H ++ K + V+ SL+N+Y KCG+++ + + + + N +++GYA
Sbjct: 213 GLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAA 272
Query: 196 NALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAV 255
N L +A F + V+ + ++++++ +C +L + +QLH +K +L +
Sbjct: 273 NGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNI 332
Query: 256 SNALLTMYIKCGMMEDAESVFE--GLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMRED 313
AL+ Y KC M DA +F+ G V NV+SWTA+I+GF Q+ E+ + L M+
Sbjct: 333 RTALMVAYSKCTAMLDALRLFKEIGCVG-NVVSWTAMISGFLQNDGKEEAVDLFSEMKRK 391
Query: 314 GIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEA 373
G+ PNE+T++V L + + S + HAQV+K VGTA++D Y LG++ EA
Sbjct: 392 GVRPNEFTYSVILTALPVISPSEV----HAQVVKTNYERSSTVGTALLDAYVKLGKVEEA 447
Query: 374 KKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSL 433
K + V+W+A +AG+ + +TE AI+ F ++ + +EFT+SSIL C+
Sbjct: 448 AKVFSGI-DDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAA 506
Query: 434 L-PSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNS 492
S+ +Q H +KS+ +S++ V S+L+ Y K G+ E AE VF + D+VSWNS
Sbjct: 507 TNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNS 566
Query: 493 MIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEY 552
MI Y+Q+G+A KA+ +F++M ++ TF+ V +AC+H+GLV++G+K F+ MV++
Sbjct: 567 MISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDC 626
Query: 553 GILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFI 612
I P + H SCMVDL RAG+LE A+ I N+P + IWR + AACR H ++
Sbjct: 627 KIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLA 686
Query: 613 SKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYR 672
+++I+ + P+D+A YV LSNMYAE+G + + RKLM + + KEPG SWIEV NK Y
Sbjct: 687 AEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYS 746
Query: 673 FFSQNKSHSEMPKVYEKLKQLMQQIEDIGH----------TDNEKEDRVL-YHSERLAVG 721
F + ++SH ++Y KL+ L +++D+G+ D+E ++ VL HSERLA+
Sbjct: 747 FLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIA 806
Query: 722 FGLISLP 728
FGLI+ P
Sbjct: 807 FGLIATP 813
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/625 (34%), Positives = 354/625 (56%), Gaps = 12/625 (1%)
Query: 116 DKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVV 175
D + ++ CS + L G++ HA TK + + +L+N+YAKC DI++ +
Sbjct: 388 DSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYF 447
Query: 176 KQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAID 235
+ ++ N +L Y +F F ++ ++ PN YTY ++L C L ++
Sbjct: 448 LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLE 507
Query: 236 EGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFK 295
G+Q+H+Q +K + V + L+ MY K G ++ A + ++V+SWT +I G+
Sbjct: 508 LGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT 567
Query: 296 QHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDF 355
Q+ +K L M + GI +E T A+++CA L+ G HAQ G +
Sbjct: 568 QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLP 627
Query: 356 VGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN 415
A+V +YS G+I E+ E ++ +++WNA ++GF ++ EEA+ F +M R
Sbjct: 628 FQNALVTLYSRCGKIEESYLAF-EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNRE 686
Query: 416 DAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDA 475
+ FT+ S +KA S ++ +Q+H+ I K+ ++S V ++LI Y KCGS DA
Sbjct: 687 GIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDA 746
Query: 476 ERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHS 535
E+ F +++ + VSWN++I AYS++G +A+ F++M+ +RP + T + VLSACSH
Sbjct: 747 EKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI 806
Query: 536 GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRP 595
GLV G FESM EYG+ P+ HY C+VD+L RAG L A FI +PIKP A +WR
Sbjct: 807 GLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRT 866
Query: 596 LFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655
L +AC H ++++ EF + +LEL+P+D+A YV LSN+YA + + R+ MK K +
Sbjct: 867 LLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGV 926
Query: 656 SKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHTDN---------- 705
KEPG SWIEV N I+ F+ +++H +++E + L ++ +IG+ +
Sbjct: 927 KKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQH 986
Query: 706 EKEDRVLY-HSERLAVGFGLISLPA 729
E++D +++ HSE+LA+ FGL+SLPA
Sbjct: 987 EQKDPIIFIHSEKLAISFGLLSLPA 1011
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/588 (35%), Positives = 338/588 (57%), Gaps = 5/588 (0%)
Query: 116 DKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVV 175
D + VLS CS LE G++ HA I + + D + L++ Y KCG + + +
Sbjct: 248 DGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLF 307
Query: 176 KQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAID 235
MP +I S LL+GY +NAL +A F + ++P+ Y S++L C SL A+
Sbjct: 308 NGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALG 367
Query: 236 EGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFK 295
G Q+HA T+K + + V+N+L+ MY KC + DA VF+ +V+ + A+I G+
Sbjct: 368 FGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYS 427
Query: 296 QHG---DYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMAL 352
+ G + + L + MR I P+ TF L + ASL + + H + K G+ L
Sbjct: 428 RLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNL 487
Query: 353 GDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQM 412
F G+A++D+YS + +++ EM K V WN+ AG+ + + EEA+ F ++
Sbjct: 488 DIFAGSALIDVYSNCYCLKDSRLVFDEM-KVKDLVIWNSMFAGYVQQSENEEALNLFLEL 546
Query: 413 VRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSW 472
+ DEFT+++++ A L S+ ++ H +++K E N ++ ++L++ Y KCGS
Sbjct: 547 QLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSP 606
Query: 473 EDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSAC 532
EDA + F + DVV WNS+I +Y+ +G +KA+ + EKM+ EGI P TF+ VLSAC
Sbjct: 607 EDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSAC 666
Query: 533 SHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPI 592
SH+GLV+DG K FE M++ +GI PE HY CMV LLGRAG+L A I +P KP A +
Sbjct: 667 SHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIV 725
Query: 593 WRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652
WR L + C ++++AE ++ + DP D+ + LSN+YA G+ +A++ R+ MK+
Sbjct: 726 WRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKV 785
Query: 653 KEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDI 700
+ + KEPG SWI + +++ F S++KSH + ++YE L L+ QI +
Sbjct: 786 EGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDLLVQIRGV 833
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/628 (32%), Positives = 342/628 (54%), Gaps = 11/628 (1%)
Query: 123 VLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLD 182
+L C E L +G+ H L+ K+ D F L NMYAKC + V +MP D
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERD 200
Query: 183 IASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHA 242
+ S N ++AGY++N + A + +++P+ T ++L +L I GK++H
Sbjct: 201 LVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHG 260
Query: 243 QTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEK 302
M+ + S +S AL+ MY KCG +E A +F+G+++RNV+SW ++I+ + Q+ + ++
Sbjct: 261 YAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKE 320
Query: 303 PLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVD 362
+ + M ++G+ P + + AL +CA L + G H ++ G+ V +++
Sbjct: 321 AMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLIS 380
Query: 363 MYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEF 422
MY E+ A ++ +S + VSWNA I GF +N + +A+ FSQM D F
Sbjct: 381 MYCKCKEVDTAASMFGKL-QSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTF 439
Query: 423 TYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQL 482
TY S++ A + L + IH +++S + NV V ++L++ Y KCG+ A +F +
Sbjct: 440 TYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMM 499
Query: 483 TAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQ 542
+ V +WN+MI Y +G + A+ LFE+M I+P TFL+V+SACSHSGLV+ G
Sbjct: 500 SERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGL 559
Query: 543 KVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRC 602
K F M + Y I HY MVDLLGRAG+L A FI +P+KP ++ + AC+
Sbjct: 560 KCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQI 619
Query: 603 HSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCS 662
H ++ AE ++++ EL+PDD +V L+N+Y A + + R M + + K PGCS
Sbjct: 620 HKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCS 679
Query: 663 WIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHT----------DNEKEDRVL 712
+E+ N+++ FFS + +H + K+Y L++L+ I++ G+ ++ KE +
Sbjct: 680 MVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVENDVKEQLLS 739
Query: 713 YHSERLAVGFGLISLPAKNKFECSRTLE 740
HSE+LA+ FGL++ A + L
Sbjct: 740 THSEKLAISFGLLNTTAGTTIHVRKNLR 767
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/532 (37%), Positives = 314/532 (59%), Gaps = 17/532 (3%)
Query: 220 TYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGL 279
TYS ++ C S A+ EG + + + N L+ MY+K ++ DA +F+ +
Sbjct: 63 TYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQM 122
Query: 280 VQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGY 339
QRNVISWT +I+ + + ++K L L+ LM D + PN YT++ L SC + + M
Sbjct: 123 PQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM-- 180
Query: 340 MFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRN 399
H +IK G+ FV +A++D+++ LGE +A EM + ++ WN+ I GF +N
Sbjct: 181 -LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGGFAQN 238
Query: 400 QKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVG 459
+++ A+E F +M R ++ T +S+L+AC+ L L Q H IVK ++ ++ +
Sbjct: 239 SRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILN 296
Query: 460 SSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIR 519
++L++ Y KCGS EDA RVF+Q+ DV++W++MI +QNG +++A+ LFE+M G +
Sbjct: 297 NALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTK 356
Query: 520 PTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALI 579
P T + VL ACSH+GL++DG F SM K YGI P HY CM+DLLG+AGKL+ A+
Sbjct: 357 PNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVK 416
Query: 580 FISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGL 639
++ + +P A WR L ACR ++ +AE+ +K+++ LDP+DA Y LSN+YA +
Sbjct: 417 LLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQK 476
Query: 640 QADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIED 699
EE R M+ + I KEPGCSWIEV +I+ F + SH ++ +V +KL QL+ ++
Sbjct: 477 WDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTG 536
Query: 700 IGHT-----------DNEKEDRVLYHSERLAVGFGLISLPAKNKFECSRTLE 740
IG+ + ED + +HSE+LA+ FGL++LP + + L
Sbjct: 537 IGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLR 588
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 382 bits (981), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/543 (36%), Positives = 313/543 (57%), Gaps = 13/543 (2%)
Query: 209 LDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGM 268
L+G + + Y+T+L C + +G+ +HA ++ + + N LL MY KCG
Sbjct: 51 LEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGS 110
Query: 269 MEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALAS 328
+E+A VFE + QR+ ++WT +I+G+ QH L M G PNE+T + + +
Sbjct: 111 LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKA 170
Query: 329 CASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVS 388
A+ R G+ H +K G VG+A++D+Y+ G + +A+ + +S + VS
Sbjct: 171 AAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDAL-ESRNDVS 229
Query: 389 WNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIV 448
WNA IAG R TE+A+E F M+R+ F+Y+S+ ACS L + +H+ ++
Sbjct: 230 WNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMI 289
Query: 449 KSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAII 508
KS + G++L++ Y K GS DA ++F +L DVVSWNS++ AY+Q+G ++A+
Sbjct: 290 KSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVW 349
Query: 509 LFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLL 568
FE+M GIRP +FL+VL+ACSHSGL+ +G +E M K+ GI+PE HY +VDLL
Sbjct: 350 WFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLL 408
Query: 569 GRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYV 628
GRAG L AL FI +PI+PTA IW+ L ACR H + ++ + ++ + ELDPDD +V
Sbjct: 409 GRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHV 468
Query: 629 TLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYE 688
L N+YA G DA RK MK + KEP CSW+E+ N I+ F + ++ H + ++
Sbjct: 469 ILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIAR 528
Query: 689 KLKQLMQQIEDIG----------HTD-NEKEDRVLYHSERLAVGFGLISLPAKNKFECSR 737
K ++++ +I+++G H D E+E + YHSE++A+ F L++ P + +
Sbjct: 529 KWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKK 588
Query: 738 TLE 740
+
Sbjct: 589 NIR 591
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 216/637 (33%), Positives = 348/637 (54%), Gaps = 14/637 (2%)
Query: 116 DKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVV 175
D+ I +L+ + + L LG++ H + K + V+ SL+NMY K V
Sbjct: 314 DQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVF 373
Query: 176 KQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSL-SAI 234
M D+ S N ++AG A+N L +A F++L ++P+ YT +++L SL +
Sbjct: 374 DNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGL 433
Query: 235 DEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGF 294
KQ+H +K+ +S + VS AL+ Y + M++AE +FE ++++W A++ G+
Sbjct: 434 SLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERH-NFDLVAWNAMMAGY 492
Query: 295 KQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGD 354
Q D K L+L LM + G +++T +C L + G HA IK G L
Sbjct: 493 TQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDL 552
Query: 355 FVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVR 414
+V + I+DMY G++ A+ + V+W I+G N + E A FSQM
Sbjct: 553 WVSSGILDMYVKCGDMSAAQFAFDSI-PVPDDVAWTTMISGCIENGEEERAFHVFSQMRL 611
Query: 415 NDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWED 474
DEFT +++ KA S L +L QIH+ +K ++ VG+SL++ Y KCGS +D
Sbjct: 612 MGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDD 671
Query: 475 AERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSH 534
A +F ++ ++ +WN+M+ +Q+G ++ + LF++M GI+P TF+ VLSACSH
Sbjct: 672 AYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSH 731
Query: 535 SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWR 594
SGLV + K SM +YGI PE HYSC+ D LGRAG ++ A I ++ ++ +A ++R
Sbjct: 732 SGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYR 791
Query: 595 PLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654
L AACR D + + ++ ++LEL+P D++ YV LSNMYA A + + R +MK +
Sbjct: 792 TLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHK 851
Query: 655 ISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHT----------- 703
+ K+PG SWIEV NKI+ F ++S+ + +Y K+K +++ I+ G+
Sbjct: 852 VKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVE 911
Query: 704 DNEKEDRVLYHSERLAVGFGLISLPAKNKFECSRTLE 740
+ EKE + YHSE+LAV FGL+S P + L
Sbjct: 912 EEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLR 948
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 213/674 (31%), Positives = 353/674 (52%), Gaps = 75/674 (11%)
Query: 111 LESLLDKQFVIEVLSYCSREECLELGRRY-HALITKTAVCGDQFVTASLVNMYAKCGDIK 169
L S D ++L C + + + RY HA + K+ + F+ L++ Y+KCG ++
Sbjct: 13 LSSFTDSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLE 72
Query: 170 SMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGID---------------- 213
V +MP +I + N ++ G K D+A S F + D
Sbjct: 73 DGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDR 132
Query: 214 ---------------VQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNA 258
N Y+++++L+ C L+ +++G Q+H+ K +LS + +A
Sbjct: 133 CEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSA 192
Query: 259 LLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPN 318
L+ MY KCG + DA+ VF+ + RNV+SW ++I F+Q+G + L + +M E ++P+
Sbjct: 193 LVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPD 252
Query: 319 EYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFV-GTAIVDMYSGLGEIWEAKKQL 377
E T +++CASL +G H +V+K D + A VDMY+ I EA+
Sbjct: 253 EVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIF 312
Query: 378 KEM---------------GKSASS---------------VSWNAQIAGFFRNQKTEEAIE 407
M +AS+ VSWNA IAG+ +N + EEA+
Sbjct: 313 DSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALS 372
Query: 408 AFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKF------ESNVHVGSS 461
F + R +++++ILKAC+ L L Q H ++K F E ++ VG+S
Sbjct: 373 LFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNS 432
Query: 462 LIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT 521
LI+ Y KCG E+ VF ++ D VSWN+MI ++QNG +A+ LF +M+ G +P
Sbjct: 433 LIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPD 492
Query: 522 NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFI 581
+ T + VLSAC H+G V++G+ F SM +++G+ P HY+CMVDLLGRAG LE A I
Sbjct: 493 HITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMI 552
Query: 582 SNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQA 641
+P++P + IW L AAC+ H ++ + +++++++LE++P ++ YV LSNMYAE G
Sbjct: 553 EEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWE 612
Query: 642 DAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIE--- 698
D RK M+ + ++K+PGCSWI++ + F ++KSH +++ L L+ ++
Sbjct: 613 DVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMRPEQ 672
Query: 699 ---DIGHTDNEKED 709
+IG +E+ D
Sbjct: 673 DHTEIGSLSSEEMD 686
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYU9|PP378_ARATH Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 213/676 (31%), Positives = 364/676 (53%), Gaps = 24/676 (3%)
Query: 79 ISRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRR 138
+S + + N++F F+ + V V+ YS + L + C L GR
Sbjct: 56 VSLSKHRKLNEAFE--FLQEMDKAGVSVSSYSYQCLFEA---------CRELRSLSHGRL 104
Query: 139 YHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNAL 198
H + + ++ MY +C ++ + +M L+ S +++ YA+ +
Sbjct: 105 LHDRMRMGIENPSVLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGI 164
Query: 199 FDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNA 258
D+A F + +P Y+T+L + A+D G+Q+HA ++ S T++
Sbjct: 165 LDKAVGLFSGMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETG 224
Query: 259 LLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPN 318
++ MY+KCG + A+ VF+ + + ++ T ++ G+ Q G L+L + +G++ +
Sbjct: 225 IVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWD 284
Query: 319 EYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLK 378
+ F+V L +CASL ++G HA V K G+ VGT +VD Y A + +
Sbjct: 285 SFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQ 344
Query: 379 EMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQM-VRNDAACDEFTYSSILKACSLLPSL 437
E+ + + VSW+A I+G+ + + EEA++ F + +N + + FTY+SI +ACS+L
Sbjct: 345 EI-REPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADC 403
Query: 438 ATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAY 497
Q+H+ +K + + S+LI Y+KCG +DA VF + D+V+W + I +
Sbjct: 404 NIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGH 463
Query: 498 SQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE 557
+ G A +A+ LFEKMV G++P + TF+AVL+ACSH+GLV+ G+ ++M+++Y + P
Sbjct: 464 AYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPT 523
Query: 558 EAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQIL 617
HY CM+D+ R+G L+ AL F+ N+P +P A W+ + C H +L++ E +++
Sbjct: 524 IDHYDCMIDIYARSGLLDEALKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELR 583
Query: 618 ELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQN 677
+LDP+D A YV N+Y AG +A E KLM + + KE CSWI+ KI+RF +
Sbjct: 584 QLDPEDTAGYVLPFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGD 643
Query: 678 KSHSEMPKVYEKLKQLMQQIE-DIGHTD-NEKEDRVLYHSERLAVGFGLISL----PA-- 729
K H + ++YEKLK+ +E D+ + E+ +++L HSERLA+ FGLIS+ PA
Sbjct: 644 KHHPQTQEIYEKLKEFDGFMEGDMFQCNMTERREQLLDHSERLAIAFGLISVHGNAPAPI 703
Query: 730 ---KNKFECSRTLEYA 742
KN C E+A
Sbjct: 704 KVFKNLRACPDCHEFA 719
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/617 (31%), Positives = 334/617 (54%), Gaps = 15/617 (2%)
Query: 137 RRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKN 196
++ HA + + F+ L++ + GDI V +P I N ++ GY++N
Sbjct: 38 KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97
Query: 197 ALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVS 256
F A + + V P+ +T+ +L C LS + G+ +HAQ +L + + V
Sbjct: 98 NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157
Query: 257 NALLTMYIKCGMMEDAESVFEGLV--QRNVISWTAIINGFKQHGDYEKPLRLVCLMREDG 314
N L+ +Y KC + A +VFEGL +R ++SWTAI++ + Q+G+ + L + MR+
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217
Query: 315 IDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAK 374
+ P+ L + L++ G HA V+K G+ + + ++ MY+ G++ AK
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277
Query: 375 KQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLL 434
+M KS + + WNA I+G+ +N EAI+ F +M+ D D + +S + AC+ +
Sbjct: 278 ILFDKM-KSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQV 336
Query: 435 PSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMI 494
SL ++ + +S + +V + S+LI+ + KCGS E A VF + DVV W++MI
Sbjct: 337 GSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMI 396
Query: 495 KAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGI 554
Y +GRAR+AI L+ M G+ P + TFL +L AC+HSG+V++G F M ++ I
Sbjct: 397 VGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA-DHKI 455
Query: 555 LPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISK 614
P++ HY+C++DLLGRAG L+ A I +P++P +W L +AC+ H +++ E+ ++
Sbjct: 456 NPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQ 515
Query: 615 QILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFF 674
Q+ +DP + YV LSN+YA A L E R MK K ++K+ GCSW+EV ++ F
Sbjct: 516 QLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFR 575
Query: 675 SQNKSHSEMPKVYEKLKQLMQQIEDIGHT-----------DNEKEDRVLYHSERLAVGFG 723
+KSH ++ +++ + ++++ G D E E+ + HSER+A+ +G
Sbjct: 576 VGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYG 635
Query: 724 LISLPAKNKFECSRTLE 740
LIS P ++ L
Sbjct: 636 LISTPQGTPLRITKNLR 652
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 742 | ||||||
| 147860004 | 1321 | hypothetical protein VITISV_006763 [Viti | 0.928 | 0.521 | 0.576 | 0.0 | |
| 297746037 | 702 | unnamed protein product [Vitis vinifera] | 0.822 | 0.868 | 0.384 | 1e-135 | |
| 168056582 | 986 | predicted protein [Physcomitrella patens | 0.839 | 0.631 | 0.361 | 1e-124 | |
| 54695180 | 986 | PpPPR_98 [Physcomitrella patens] | 0.839 | 0.631 | 0.361 | 1e-124 | |
| 168045266 | 804 | predicted protein [Physcomitrella patens | 0.840 | 0.776 | 0.363 | 1e-122 | |
| 168044807 | 902 | predicted protein [Physcomitrella patens | 0.834 | 0.686 | 0.362 | 1e-122 | |
| 328774757 | 1161 | pentatricopeptide repeat protein 77 [Fun | 0.885 | 0.565 | 0.350 | 1e-121 | |
| 328774763 | 820 | pentatricopeptide repeat protein 79 [Fun | 0.840 | 0.760 | 0.363 | 1e-121 | |
| 328774759 | 980 | pentatricopeptide repeat protein 98 [Fun | 0.839 | 0.635 | 0.349 | 1e-120 | |
| 328774751 | 837 | pentatricopeptide repeat protein 71 [Fun | 0.816 | 0.724 | 0.364 | 1e-120 |
| >gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/723 (57%), Positives = 535/723 (73%), Gaps = 34/723 (4%)
Query: 21 PVVEQVKPKKCNHRKTVEVKEPFASYSACQLFNKSPKRAGLSTSDLIFNGYMNIEEKGIS 80
P++ P K K V +AC LF K+PKR G+S ++ +G + E+G+
Sbjct: 32 PIISASGPYKGCMSKGNVVGGWVDLNNACILFEKTPKRIGVSITESHRSGCTDDPEEGVK 91
Query: 81 RNGYSTRNDS----FPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELG 136
G+ TRN++ F GF +Q+V LS+C RE C+ELG
Sbjct: 92 EAGFFTRNETPHVEFGGGFPH-------------------RQYVFSALSFCGREGCVELG 132
Query: 137 RRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKN 196
RR+H + K + D+FV SL++MYAKCG++ S V V +M LD A+CNCL++ YA+N
Sbjct: 133 RRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARN 192
Query: 197 ALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVS 256
F QAF F+++ + +PNHYTYSTMLA+CG++SAI EGKQLHA +K+QYLS+TAV
Sbjct: 193 GFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVG 252
Query: 257 NALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGID 316
NALLT+Y KCGMME+AE VFE L QRN+ISWTA INGF QHGD++K L+ +MRE GI+
Sbjct: 253 NALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIE 312
Query: 317 PNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQ 376
PNE+TF++ LASC +++ G MFH QVIK+GMA G FVGTAI+DMYSGLGE+ EA+KQ
Sbjct: 313 PNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQ 372
Query: 377 LKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPS 436
K+MG++AS+VSWNA IAG+ N+K E+A+EAF +MV+ D AC+EFTYS+I KACS PS
Sbjct: 373 FKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPS 432
Query: 437 LATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKA 496
LAT QIHSR++KS ESN+HV SSLIEAY +CGS E+A +VF+Q++ ADVVSWNS+IKA
Sbjct: 433 LATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKA 492
Query: 497 YSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILP 556
YSQNG KAI L KM+ EG +PT+ TFL VLSACSHSGLVQ+GQ+ F+SMV++Y I P
Sbjct: 493 YSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQP 552
Query: 557 EEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQI 616
EE H SCMVD+LGRAG+LE AL FI L +KPTA IWRPL AACR +S+L+MAE+++++I
Sbjct: 553 EETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKI 612
Query: 617 LELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQ 676
L+L+P+DA VYVTLSNMYAE G ADAE QR+LM+ KEISKEPGCSWIEV NK+Y+FFS
Sbjct: 613 LDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEVNNKMYKFFSH 672
Query: 677 NKSHSEMPKVYEKLKQLMQQIEDIGHTD-----------NEKEDRVLYHSERLAVGFGLI 725
+K+H EMPKVYEKLKQL++QI+DIG++ KE +LYHSE+LAV FGL+
Sbjct: 673 DKAHPEMPKVYEKLKQLVRQIQDIGYSPPTTTVLHPESRQPKEQLILYHSEKLAVCFGLL 732
Query: 726 SLP 728
SLP
Sbjct: 733 SLP 735
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297746037|emb|CBI16093.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 271/704 (38%), Positives = 394/704 (55%), Gaps = 94/704 (13%)
Query: 21 PVVEQVKPKKCNHRKTVEVKEPFASYSACQLFNKSPKRAGLSTSDLIFNGYMNIEEKGIS 80
P++ P K K V +AC LF K+PKR G+S ++ +G + E+G+
Sbjct: 32 PIISASGPYKGCMSKGNVVGGWVDLNNACILFEKTPKRIGVSITESHRSGCTDDPEEGVK 91
Query: 81 RNGYSTRNDS----FPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELG 136
G+ TRN++ F GF +Q+V LS+C RE C+ELG
Sbjct: 92 EAGFFTRNETPHVEFGGGFPH-------------------RQYVFSALSFCGREGCVELG 132
Query: 137 RRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKN 196
RR+H + K + D+FV SL++MYAKCG++ S V V +M LD A+CNCL++ YA+N
Sbjct: 133 RRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARN 192
Query: 197 ALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVS 256
F QAF F+++ + +PNHYTYSTMLA+CG++SAI EGKQLHA +K+QYLS+TAV
Sbjct: 193 GFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVG 252
Query: 257 NALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGID 316
NALLT+Y KCGMME+AE VFE L QRN+ISWTA INGF QHGD++K L+ +MRE GI+
Sbjct: 253 NALLTLYSKCGMMEEAEIVFENLGQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIE 312
Query: 317 PNEYTFTVALASCA--------------------------------------SLR----- 333
PNE+TF++ LASC SLR
Sbjct: 313 PNEFTFSIVLASCGCDLGKWMKQRTSSNRWGGQHLMSIFLLRKMIEEGNKPTSLRPNQFV 372
Query: 334 ------------NSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMG 381
+ G H ++K ++ +A++ MYS G + +A + +
Sbjct: 373 LPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWI- 431
Query: 382 KSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCE 441
+ VSWN IAG FSQM+ T SS+L AC+ + +L +
Sbjct: 432 --PNVVSWNTLIAG-------------FSQMLDQGFCPSSVTISSLLPACTNVANLRHGK 476
Query: 442 QIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNG 501
+IH + E +V+V S+L++ Y KCG +A+ +F + + V+WNS+I Y+ +G
Sbjct: 477 EIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHG 536
Query: 502 RARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHY 561
+AI LF +M + + TF AVL+ACSH+G+V+ G+ +F M ++Y I P HY
Sbjct: 537 YCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPRLEHY 596
Query: 562 SCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDP 621
+CMVDLLGRAGKL A I +P++P +W L ACR H ++++AE ++ + EL+P
Sbjct: 597 ACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEP 656
Query: 622 DDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIE 665
+ + LSN+YA+AG +A + +K+MK ++ K PGCSWIE
Sbjct: 657 ESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 700
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens] gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 230/636 (36%), Positives = 373/636 (58%), Gaps = 13/636 (2%)
Query: 116 DKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVV 175
DK + +L C+ E LE G++ HA + + + +V ++++MY KCG ++ + V
Sbjct: 311 DKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVF 370
Query: 176 KQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAID 235
+ ++ S ++AG+A++ D+AF FF K+ ++PN T+ ++L C S SA+
Sbjct: 371 DLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALK 430
Query: 236 EGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFK 295
G+Q+ ++ Y S V ALL+MY KCG ++DA VFE + ++NV++W A+I +
Sbjct: 431 RGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYV 490
Query: 296 QHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDF 355
QH Y+ L + ++GI PN TFT L C S + +G H ++K G+
Sbjct: 491 QHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLH 550
Query: 356 VGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN 415
V A+V M+ G++ AK +M K VSWN IAGF ++ K + A + F M +
Sbjct: 551 VSNALVSMFVNCGDLMSAKNLFNDMPKR-DLVSWNTIIAGFVQHGKNQVAFDYFKMMQES 609
Query: 416 DAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDA 475
D+ T++ +L AC+ +L ++H+ I ++ F+ +V VG+ LI Y KCGS EDA
Sbjct: 610 GIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDA 669
Query: 476 ERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHS 535
+VF +L +V SW SMI Y+Q+GR ++A+ LF +M EG++P TF+ LSAC+H+
Sbjct: 670 HQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHA 729
Query: 536 GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRP 595
GL+++G F+SM KE+ I P HY CMVDL GRAG L A+ FI + ++P + +W
Sbjct: 730 GLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGA 788
Query: 596 LFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655
L AC+ H ++++AE +++ LELDP+D V+V LSN+YA AG+ + + RK+M + +
Sbjct: 789 LLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGV 848
Query: 656 SKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHT-----------D 704
K+PG SWIEV K++ F+S +K+H + +++ +L++L ++ +G+ D
Sbjct: 849 VKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVED 908
Query: 705 NEKEDRVLYHSERLAVGFGLISLPAKNKFECSRTLE 740
NEKE + YHSERLA+ +GL+ P S+ L
Sbjct: 909 NEKEQALFYHSERLAITYGLLKTPPLTPIVISKNLR 944
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 230/636 (36%), Positives = 373/636 (58%), Gaps = 13/636 (2%)
Query: 116 DKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVV 175
DK + +L C+ E LE G++ HA + + + +V ++++MY KCG ++ + V
Sbjct: 311 DKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVF 370
Query: 176 KQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAID 235
+ ++ S ++AG+A++ D+AF FF K+ ++PN T+ ++L C S SA+
Sbjct: 371 DLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALK 430
Query: 236 EGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFK 295
G+Q+ ++ Y S V ALL+MY KCG ++DA VFE + ++NV++W A+I +
Sbjct: 431 RGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYV 490
Query: 296 QHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDF 355
QH Y+ L + ++GI PN TFT L C S + +G H ++K G+
Sbjct: 491 QHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLH 550
Query: 356 VGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN 415
V A+V M+ G++ AK +M K VSWN IAGF ++ K + A + F M +
Sbjct: 551 VSNALVSMFVNCGDLMSAKNLFNDMPKR-DLVSWNTIIAGFVQHGKNQVAFDYFKMMQES 609
Query: 416 DAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDA 475
D+ T++ +L AC+ +L ++H+ I ++ F+ +V VG+ LI Y KCGS EDA
Sbjct: 610 GIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDA 669
Query: 476 ERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHS 535
+VF +L +V SW SMI Y+Q+GR ++A+ LF +M EG++P TF+ LSAC+H+
Sbjct: 670 HQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHA 729
Query: 536 GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRP 595
GL+++G F+SM KE+ I P HY CMVDL GRAG L A+ FI + ++P + +W
Sbjct: 730 GLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGA 788
Query: 596 LFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655
L AC+ H ++++AE +++ LELDP+D V+V LSN+YA AG+ + + RK+M + +
Sbjct: 789 LLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGV 848
Query: 656 SKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHT-----------D 704
K+PG SWIEV K++ F+S +K+H + +++ +L++L ++ +G+ D
Sbjct: 849 VKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVED 908
Query: 705 NEKEDRVLYHSERLAVGFGLISLPAKNKFECSRTLE 740
NEKE + YHSERLA+ +GL+ P S+ L
Sbjct: 909 NEKEQALFYHSERLAITYGLLKTPPLTPIVISKNLR 944
|
Source: Physcomitrella patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens] gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 231/636 (36%), Positives = 363/636 (57%), Gaps = 12/636 (1%)
Query: 116 DKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVV 175
DK + +LS CS L GR H + + + D V +L++MYAKCG ++ V
Sbjct: 128 DKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVF 187
Query: 176 KQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAID 235
M D S L YA++ +++ + + V+P+ TY +L+ CGSL+A++
Sbjct: 188 DAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALE 247
Query: 236 EGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFK 295
+GKQ+HA ++ +Y S VS AL MY+KCG +DA VFE L R+VI+W +I GF
Sbjct: 248 KGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFV 307
Query: 296 QHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDF 355
G E+ M E+G+ P+ T+T L++CA G HA+ K G+
Sbjct: 308 DSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVR 367
Query: 356 VGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN 415
G A+++MYS G + +A++ M K VSW + + + E+ F QM++
Sbjct: 368 FGNALINMYSKAGSMKDARQVFDRMPKR-DVVSWTTLLGRYADCDQVVESFTTFKQMLQQ 426
Query: 416 DAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDA 475
++ TY +LKACS +L ++IH+ +VK+ +++ V ++L+ Y KCGS EDA
Sbjct: 427 GVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDA 486
Query: 476 ERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHS 535
RVF ++ DVV+WN++I QNGR +A+ +E M EG+RP +TF+ VLSAC
Sbjct: 487 IRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVC 546
Query: 536 GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRP 595
LV++G++ F M K+YGI+P E HY+CMVD+L RAG L A I +P+KP+A +W
Sbjct: 547 NLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGA 606
Query: 596 LFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655
L AACR H ++++ E ++ L+L+P +A +YV+LS +YA AG+ D + RK MK + +
Sbjct: 607 LLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGV 666
Query: 656 SKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHT-----------D 704
KEPG SWIE+ +++ F ++++SH ++Y +L+ L +Q++ +G+ D
Sbjct: 667 KKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRFVMHDLDD 726
Query: 705 NEKEDRVLYHSERLAVGFGLISLPAKNKFECSRTLE 740
KE V +HSE+LA+ +GLIS P S+ L
Sbjct: 727 EGKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLR 762
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens] gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 229/631 (36%), Positives = 376/631 (59%), Gaps = 12/631 (1%)
Query: 121 IEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPY 180
I VL+ S L+ G+ H+ I D V +LV MYAKCG K V +++
Sbjct: 231 ISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVN 290
Query: 181 LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQL 240
D+ + N ++ G A+ +++A + ++ V PN TY +L C + +A+ GK++
Sbjct: 291 RDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEI 350
Query: 241 HAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDY 300
H++ K + S V NAL++MY +CG ++DA VF+ +V+++VISWTA+I G + G
Sbjct: 351 HSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFG 410
Query: 301 EKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAI 360
+ L + M++ G++PN T+T L +C+S G H QV++ G+A VG +
Sbjct: 411 AEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTL 470
Query: 361 VDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACD 420
V+MYS G + +A++ M + V++NA I G+ + +EA++ F ++ D
Sbjct: 471 VNMYSMCGSVKDARQVFDRMIQR-DIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPD 529
Query: 421 EFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFS 480
+ TY ++L AC+ SL +IH+ + K F S+ VG++L+ Y KCGS+ DA VF
Sbjct: 530 KVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFE 589
Query: 481 QLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQD 540
++T +V+SWN++I +Q+GR + A+ LFE+M +EG++P TF+++LSACSH+GL+++
Sbjct: 590 KMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEE 649
Query: 541 GQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAAC 600
G++ F SM +++ I+P HY CMVDLLGRAG+L+ A I +P + IW L AC
Sbjct: 650 GRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGAC 709
Query: 601 RCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPG 660
R H ++ +AE ++ L+LD D+A VYV LS+MYA AG+ A + RKLM+ + ++KEPG
Sbjct: 710 RIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPG 769
Query: 661 CSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHT-----------DNEKED 709
SWI+V +K++ F ++++SH + K+Y +L +L ++ G+ + EKE+
Sbjct: 770 RSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKEN 829
Query: 710 RVLYHSERLAVGFGLISLPAKNKFECSRTLE 740
V +HSERLA+ +GLIS P + + L
Sbjct: 830 AVCHHSERLAIAYGLISTPPGTRIHIFKNLR 860
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 243/693 (35%), Positives = 384/693 (55%), Gaps = 36/693 (5%)
Query: 48 ACQLFNKSPKRAGLSTSDLIFNGYMNIEEKGISRNGY-STRNDSFPDGFIDDGCSNTVPV 106
A +LFN PKR L + + I GY E++G + Y +++ G +
Sbjct: 439 ARELFNTMPKR-DLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVT--------- 488
Query: 107 TCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCG 166
+ +LS C+ G+ H I ++ + + + +L+NMY +CG
Sbjct: 489 -------------FLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCG 535
Query: 167 DIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLA 226
I V + DI S N ++AG+A++ ++ A+ FL++ ++P+ T++++L
Sbjct: 536 SIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLV 595
Query: 227 ICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVIS 286
C + A++ G+Q+H ++ + NAL+ MYI+CG ++DA VF L RNV+S
Sbjct: 596 GCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMS 655
Query: 287 WTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVI 346
WTA+I GF G+ K L M+ DG P + TF+ L +C S G A ++
Sbjct: 656 WTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHIL 715
Query: 347 KRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAI 406
G L VG A++ YS G + +A+K +M + +SWN IAG+ +N A+
Sbjct: 716 NSGYELDTGVGNALISAYSKSGSMTDARKVFDKM-PNRDIMSWNKMIAGYAQNGLGGTAL 774
Query: 407 EAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAY 466
+ QM ++F++ SIL ACS +L +++H+ IVK K + +V VG++LI Y
Sbjct: 775 QFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMY 834
Query: 467 NKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFL 526
KCGS E+A+ VF T +VV+WN+MI AY+Q+G A KA+ F M EGI+P STF
Sbjct: 835 AKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFT 894
Query: 527 AVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPI 586
++LSAC+HSGLV +G ++F S+ ++G+ P HY C+V LLGRAG+ + A I+ +P
Sbjct: 895 SILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPF 954
Query: 587 KPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQ 646
P A +W L ACR H ++ +AE + L+L+ + AVYV LSN+YA AG D +
Sbjct: 955 PPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKI 1014
Query: 647 RKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHT--- 703
R++M+ + I KEPG SWIEV N I+ F + ++SH E ++YE+LK+L ++E G++
Sbjct: 1015 RRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPDT 1074
Query: 704 -------DNEKEDRVL-YHSERLAVGFGLISLP 728
D E ++ L HSERLA+ +GL+ P
Sbjct: 1075 QYVLHNLDKEHQETSLCTHSERLAIAYGLLKTP 1107
|
Source: Funaria hygrometrica Species: Funaria hygrometrica Genus: Funaria Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica] | Back alignment and taxonomy information |
|---|
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/636 (36%), Positives = 367/636 (57%), Gaps = 12/636 (1%)
Query: 116 DKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVV 175
DK + +LS CS L GR H + + + + V +L++MYAKCG ++ V
Sbjct: 144 DKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVF 203
Query: 176 KQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAID 235
M D S L YA++ ++ + + V+P+ TY +L+ CGSL+A++
Sbjct: 204 DAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALE 263
Query: 236 EGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFK 295
+GKQ+HAQ ++ ++ S VS AL MYIKCG ++DA VFE L R+VI+W +I G
Sbjct: 264 KGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLV 323
Query: 296 QHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDF 355
G E+ + M ++ + P+ T+ L++CA G HA+ +K G+
Sbjct: 324 DSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVR 383
Query: 356 VGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN 415
G A+++MYS G + +A++ M K VSW A + G+ + E+ F +M++
Sbjct: 384 FGNALINMYSKAGSMKDARQVFDRMPKR-DVVSWTALVGGYADCGQVVESFSTFKKMLQQ 442
Query: 416 DAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDA 475
++ TY +LKACS +L ++IH+ +VK+ +++ V ++L+ Y KCGS EDA
Sbjct: 443 GVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDA 502
Query: 476 ERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHS 535
RV ++ DVV+WN++I +QNGR +A+ FE M E +RP +TF+ V+SAC
Sbjct: 503 IRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVR 562
Query: 536 GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRP 595
LV++G++ F SM K+YGI+P E HY+CMVD+L RAG L A I +P KP+A +W
Sbjct: 563 NLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGA 622
Query: 596 LFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655
L AACR H ++++ E ++Q L+L+P +A YV+LS +YA AG+ D + RKLMK + +
Sbjct: 623 LLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGV 682
Query: 656 SKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHT----------DN 705
KEPG SWIEV +++ F + ++SH ++Y +L+ L +QI+ +G+ D
Sbjct: 683 KKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPDTRFVMHDLDQ 742
Query: 706 EKEDR-VLYHSERLAVGFGLISLPAKNKFECSRTLE 740
E ++R V +HSE+LA+ +GLIS P + S+ L
Sbjct: 743 EGKERAVCHHSEKLAIAYGLISTPPETPIRVSKNLR 778
|
Source: Funaria hygrometrica Species: Funaria hygrometrica Genus: Funaria Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/636 (34%), Positives = 373/636 (58%), Gaps = 13/636 (2%)
Query: 116 DKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVV 175
DK + +L C+ E LE G+R HA + + + + +V +L++MY KCG ++ + V
Sbjct: 305 DKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVF 364
Query: 176 KQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAID 235
+ ++ S ++AG+A++ ++AF FF K+ ++PN T+ ++L C SA+
Sbjct: 365 NLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALK 424
Query: 236 EGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFK 295
+G+Q+H + +K Y++ V ALL+MY KCG + DA +VFE + ++NV++W A+I +
Sbjct: 425 QGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYV 484
Query: 296 QHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDF 355
QH Y+ + + ++GI P+ TFT L C S +G + +I+ G
Sbjct: 485 QHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLH 544
Query: 356 VGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN 415
+ A+V M+ G++ A +M + VSWN IAGF ++ + + A + F M +
Sbjct: 545 IRNALVSMFVNCGDLMSAMNLFNDMPER-DLVSWNTIIAGFVQHGENQFAFDYFKMMQES 603
Query: 416 DAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDA 475
D+ T++ +L AC+ +L ++H+ I ++ + +V VG+ LI Y KCGS +DA
Sbjct: 604 GVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDA 663
Query: 476 ERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHS 535
VF L +V SW SMI Y+Q+GR ++A+ LF +M EG++P TF+ LSAC+H+
Sbjct: 664 HLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHA 723
Query: 536 GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRP 595
GL+++G FESM K++ I P HY CMVDL GRAG L A+ FI+ + +KP + +W
Sbjct: 724 GLIKEGLHHFESM-KDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGA 782
Query: 596 LFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655
L AC+ H D+++AE ++++ LELDP+D VYV LSN+YA AG+ + + RK+M + +
Sbjct: 783 LLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGV 842
Query: 656 SKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHT-----------D 704
K+PG SWIEV +++ F S +K+H ++ +++ +L +L +++ +G+ D
Sbjct: 843 VKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVED 902
Query: 705 NEKEDRVLYHSERLAVGFGLISLPAKNKFECSRTLE 740
+EKE + +HSERLA+ +GL+ P S+ L
Sbjct: 903 SEKEHALCHHSERLAIAYGLLKTPPLTPIVISKNLR 938
|
Source: Funaria hygrometrica Species: Funaria hygrometrica Genus: Funaria Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/618 (36%), Positives = 362/618 (58%), Gaps = 12/618 (1%)
Query: 123 VLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLD 182
VL CS L+LG+ +HA + K D + +LV+MY K G + V + D
Sbjct: 168 VLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRD 227
Query: 183 IASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHA 242
+++ N ++ GYAK+ ++AF F ++ +PN ++ ++L C + A+ GK +HA
Sbjct: 228 VSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHA 287
Query: 243 QTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEK 302
Q M + V+ AL+ MY+ CG +E A VF+ + R+V+SWT +I G+ ++ + E
Sbjct: 288 QCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIED 347
Query: 303 PLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVD 362
L M+E+GI P+ T+ + +CAS + + H+QV++ G V TA+V
Sbjct: 348 AFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVH 407
Query: 363 MYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEF 422
MY+ G I +A++ M + VSW+A I + N EEA E F M RN+ D
Sbjct: 408 MYAKCGAIKDARQVFDAMSRR-DVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVV 466
Query: 423 TYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQL 482
TY ++L AC L +L +I+++ +K+ S++ VG++LI K GS E A +F +
Sbjct: 467 TYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENM 526
Query: 483 TAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQ 542
DVV+WN MI YS +G AR+A+ LF++M+ E RP + TF+ VLSACS +G V++G+
Sbjct: 527 VQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGR 586
Query: 543 KVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRC 602
+ F ++ GI+P Y CMVDLLGRAG+L+ A + I+ +P+KP + IW L AACR
Sbjct: 587 RFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRI 646
Query: 603 HSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCS 662
+ +L +AE +++ L +P D AVYV LS+MYA AG+ + + RK+M+ + + KE GC+
Sbjct: 647 YGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCT 706
Query: 663 WIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHT-----------DNEKEDRV 711
WIEV K++ F +++SH + ++Y +L +LM I+ G+ + EKE+ +
Sbjct: 707 WIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQEKEEAI 766
Query: 712 LYHSERLAVGFGLISLPA 729
YHSE+LA+ +G++SLP+
Sbjct: 767 SYHSEKLAIAYGVLSLPS 784
|
Source: Funaria hygrometrica Species: Funaria hygrometrica Genus: Funaria Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 742 | ||||||
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.791 | 0.676 | 0.362 | 4.5e-107 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.824 | 0.575 | 0.346 | 7.7e-103 | |
| TAIR|locus:2122551 | 834 | AT4G39530 [Arabidopsis thalian | 0.785 | 0.699 | 0.357 | 1.2e-99 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.830 | 0.761 | 0.326 | 4.5e-98 | |
| TAIR|locus:2183886 | 752 | RARE1 "REQUIRED FOR ACCD RNA E | 0.824 | 0.813 | 0.332 | 3.2e-97 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.838 | 0.628 | 0.342 | 5.9e-96 | |
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.692 | 0.815 | 0.372 | 5.9e-96 | |
| TAIR|locus:2083631 | 689 | AT3G15130 "AT3G15130" [Arabido | 0.815 | 0.878 | 0.319 | 2e-95 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.940 | 0.701 | 0.312 | 2.1e-93 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.809 | 0.707 | 0.324 | 4.3e-93 |
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1035 (369.4 bits), Expect = 4.5e-107, Sum P(2) = 4.5e-107
Identities = 220/607 (36%), Positives = 357/607 (58%)
Query: 136 GRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAK 195
G + H ++ K + V+ SL+N+Y KCG+++ + + + + N +++GYA
Sbjct: 213 GLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAA 272
Query: 196 NALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAV 255
N L +A F + V+ + ++++++ +C +L + +QLH +K +L +
Sbjct: 273 NGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNI 332
Query: 256 SNALLTMYIKCGMMEDAESVFE--GLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMRED 313
AL+ Y KC M DA +F+ G V NV+SWTA+I+GF Q+ E+ + L M+
Sbjct: 333 RTALMVAYSKCTAMLDALRLFKEIGCVG-NVVSWTAMISGFLQNDGKEEAVDLFSEMKRK 391
Query: 314 GIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEA 373
G+ PNE+T++V L + + S + HAQV+K VGTA++D Y LG++ EA
Sbjct: 392 GVRPNEFTYSVILTALPVISPSEV----HAQVVKTNYERSSTVGTALLDAYVKLGKVEEA 447
Query: 374 KKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSL 433
K + V+W+A +AG+ + +TE AI+ F ++ + +EFT+SSIL C+
Sbjct: 448 AKVFSGIDDK-DIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAA 506
Query: 434 L-PSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNS 492
S+ +Q H +KS+ +S++ V S+L+ Y K G+ E AE VF + D+VSWNS
Sbjct: 507 TNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNS 566
Query: 493 MIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEY 552
MI Y+Q+G+A KA+ +F++M ++ TF+ V +AC+H+GLV++G+K F+ MV++
Sbjct: 567 MISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDC 626
Query: 553 GILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFI 612
I P + H SCMVDL RAG+LE A+ I N+P + IWR + AACR H ++
Sbjct: 627 KIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLA 686
Query: 613 SKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYR 672
+++I+ + P+D+A YV LSNMYAE+G + + RKLM + + KEPG SWIEV NK Y
Sbjct: 687 AEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYS 746
Query: 673 FFSQNKSHSEMPKVYEKLKQLMQQIEDIGHT----------DNEKEDRVL-YHSERLAVG 721
F + ++SH ++Y KL+ L +++D+G+ D+E ++ VL HSERLA+
Sbjct: 747 FLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIA 806
Query: 722 FGLISLP 728
FGLI+ P
Sbjct: 807 FGLIATP 813
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1019 (363.8 bits), Expect = 7.7e-103, P = 7.7e-103
Identities = 217/626 (34%), Positives = 356/626 (56%)
Query: 116 DKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVV 175
D + ++ CS + L G++ HA TK + + +L+N+YAKC DI++ +
Sbjct: 388 DSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYF 447
Query: 176 KQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAID 235
+ ++ N +L Y +F F ++ ++ PN YTY ++L C L ++
Sbjct: 448 LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLE 507
Query: 236 EGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFK 295
G+Q+H+Q +K + V + L+ MY K G ++ A + ++V+SWT +I G+
Sbjct: 508 LGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT 567
Query: 296 QHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDF 355
Q+ +K L M + GI +E T A+++CA L+ G HAQ G +
Sbjct: 568 QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLP 627
Query: 356 VGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN 415
A+V +YS G+I E+ E ++ +++WNA ++GF ++ EEA+ F +M R
Sbjct: 628 FQNALVTLYSRCGKIEESYLAF-EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNRE 686
Query: 416 DAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDA 475
+ FT+ S +KA S ++ +Q+H+ I K+ ++S V ++LI Y KCGS DA
Sbjct: 687 GIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDA 746
Query: 476 ERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHS 535
E+ F +++ + VSWN++I AYS++G +A+ F++M+ +RP + T + VLSACSH
Sbjct: 747 EKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI 806
Query: 536 GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRP 595
GLV G FESM EYG+ P+ HY C+VD+L RAG L A FI +PIKP A +WR
Sbjct: 807 GLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRT 866
Query: 596 LFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEE-QRKLMKMKE 654
L +AC H ++++ EF + +LEL+P+D+A YV LSN+YA + DA + R+ MK K
Sbjct: 867 LLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYA-VSKKWDARDLTRQKMKEKG 925
Query: 655 ISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHTDN--------- 705
+ KEPG SWIEV N I+ F+ +++H +++E + L ++ +IG+ +
Sbjct: 926 VKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQ 985
Query: 706 -EKEDRVLY-HSERLAVGFGLISLPA 729
E++D +++ HSE+LA+ FGL+SLPA
Sbjct: 986 HEQKDPIIFIHSEKLAISFGLLSLPA 1011
|
|
| TAIR|locus:2122551 AT4G39530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 210/588 (35%), Positives = 338/588 (57%)
Query: 116 DKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVV 175
D + VLS CS LE G++ HA I + + D + L++ Y KCG + + +
Sbjct: 248 DGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLF 307
Query: 176 KQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAID 235
MP +I S LL+GY +NAL +A F + ++P+ Y S++L C SL A+
Sbjct: 308 NGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALG 367
Query: 236 EGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFK 295
G Q+HA T+K + + V+N+L+ MY KC + DA VF+ +V+ + A+I G+
Sbjct: 368 FGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYS 427
Query: 296 QHG---DYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMAL 352
+ G + + L + MR I P+ TF L + ASL + + H + K G+ L
Sbjct: 428 RLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNL 487
Query: 353 GDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQM 412
F G+A++D+YS + +++ EM K V WN+ AG+ + + EEA+ F ++
Sbjct: 488 DIFAGSALIDVYSNCYCLKDSRLVFDEM-KVKDLVIWNSMFAGYVQQSENEEALNLFLEL 546
Query: 413 VRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSW 472
+ DEFT+++++ A L S+ ++ H +++K E N ++ ++L++ Y KCGS
Sbjct: 547 QLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSP 606
Query: 473 EDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSAC 532
EDA + F + DVV WNS+I +Y+ +G +KA+ + EKM+ EGI P TF+ VLSAC
Sbjct: 607 EDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSAC 666
Query: 533 SHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPI 592
SH+GLV+DG K FE M++ +GI PE HY CMV LLGRAG+L A I +P KP A +
Sbjct: 667 SHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIV 725
Query: 593 WRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652
WR L + C ++++AE ++ + DP D+ + LSN+YA G+ +A++ R+ MK+
Sbjct: 726 WRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKV 785
Query: 653 KEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDI 700
+ + KEPG SWI + +++ F S++KSH + ++YE L L+ QI +
Sbjct: 786 EGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDLLVQIRGV 833
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
Identities = 205/627 (32%), Positives = 345/627 (55%)
Query: 123 VLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLD 182
+L C E L +G+ H L+ K+ D F L NMYAKC + V +MP D
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERD 200
Query: 183 IASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHA 242
+ S N ++AGY++N + A + +++P+ T ++L +L I GK++H
Sbjct: 201 LVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHG 260
Query: 243 QTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEK 302
M+ + S +S AL+ MY KCG +E A +F+G+++RNV+SW ++I+ + Q+ + ++
Sbjct: 261 YAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKE 320
Query: 303 PLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVD 362
+ + M ++G+ P + + AL +CA L + G H ++ G+ V +++
Sbjct: 321 AMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLIS 380
Query: 363 MYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEF 422
MY E+ A ++ +S + VSWNA I GF +N + +A+ FSQM D F
Sbjct: 381 MYCKCKEVDTAASMFGKL-QSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTF 439
Query: 423 TYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQL 482
TY S++ A + L + IH +++S + NV V ++L++ Y KCG+ A +F +
Sbjct: 440 TYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMM 499
Query: 483 TAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQ 542
+ V +WN+MI Y +G + A+ LFE+M I+P TFL+V+SACSHSGLV+ G
Sbjct: 500 SERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGL 559
Query: 543 KVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRC 602
K F M + Y I HY MVDLLGRAG+L A FI +P+KP ++ + AC+
Sbjct: 560 KCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQI 619
Query: 603 HSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCS 662
H ++ AE ++++ EL+PDD +V L+N+Y A + + R M + + K PGCS
Sbjct: 620 HKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCS 679
Query: 663 WIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHT---------DNEKEDRVLY 713
+E+ N+++ FFS + +H + K+Y L++L+ I++ G+ +N+ ++++L
Sbjct: 680 MVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVENDVKEQLLS 739
Query: 714 -HSERLAVGFGLISLPAKNKFECSRTL 739
HSE+LA+ FGL++ A + L
Sbjct: 740 THSEKLAISFGLLNTTAGTTIHVRKNL 766
|
|
| TAIR|locus:2183886 RARE1 "REQUIRED FOR ACCD RNA EDITING 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
Identities = 207/623 (33%), Positives = 348/623 (55%)
Query: 115 LDKQFV-IEVLSY-CSREECLELGRRYHA-LITKTAVCGDQFVTASLVN----MYAKCGD 167
+DK V + SY C E C EL H L+ G + + L N MY +C
Sbjct: 74 MDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRMGIENPSVLLQNCVLQMYCECRS 133
Query: 168 IKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAI 227
++ + +M L+ S +++ YA+ + D+A F + +P Y+T+L
Sbjct: 134 LEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPPSSMYTTLLKS 193
Query: 228 CGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISW 287
+ A+D G+Q+HA ++ S T++ ++ MY+KCG + A+ VF+ + + ++
Sbjct: 194 LVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAC 253
Query: 288 TAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIK 347
T ++ G+ Q G L+L + +G++ + + F+V L +CASL ++G HA V K
Sbjct: 254 TGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAK 313
Query: 348 RGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIE 407
G+ VGT +VD Y A + +E+ + + VSW+A I+G+ + + EEA++
Sbjct: 314 LGLESEVSVGTPLVDFYIKCSSFESACRAFQEI-REPNDVSWSAIISGYCQMSQFEEAVK 372
Query: 408 AFSQM-VRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAY 466
F + +N + + FTY+SI +ACS+L Q+H+ +K + + S+LI Y
Sbjct: 373 TFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMY 432
Query: 467 NKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFL 526
+KCG +DA VF + D+V+W + I ++ G A +A+ LFEKMV G++P + TF+
Sbjct: 433 SKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFI 492
Query: 527 AVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPI 586
AVL+ACSH+GLV+ G+ ++M+++Y + P HY CM+D+ R+G L+ AL F+ N+P
Sbjct: 493 AVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPF 552
Query: 587 KPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQ 646
+P A W+ + C H +L++ E +++ +LDP+D A YV N+Y AG +A E
Sbjct: 553 EPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEM 612
Query: 647 RKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIE-DIGHTD- 704
KLM + + KE CSWI+ KI+RF +K H + ++YEKLK+ +E D+ +
Sbjct: 613 MKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEIYEKLKEFDGFMEGDMFQCNM 672
Query: 705 NEKEDRVLYHSERLAVGFGLISL 727
E+ +++L HSERLA+ FGLIS+
Sbjct: 673 TERREQLLDHSERLAIAFGLISV 695
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
Identities = 218/636 (34%), Positives = 349/636 (54%)
Query: 116 DKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVV 175
D+ I +L+ + + L LG++ H + K + V+ SL+NMY K V
Sbjct: 314 DQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVF 373
Query: 176 KQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSL-SAI 234
M D+ S N ++AG A+N L +A F++L ++P+ YT +++L SL +
Sbjct: 374 DNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGL 433
Query: 235 DEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGF 294
KQ+H +K+ +S + VS AL+ Y + M++AE +FE ++++W A++ G+
Sbjct: 434 SLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERH-NFDLVAWNAMMAGY 492
Query: 295 KQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGD 354
Q D K L+L LM + G +++T +C L + G HA IK G L
Sbjct: 493 TQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDL 552
Query: 355 FVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVR 414
+V + I+DMY G++ A+ + V+W I+G N + E A FSQM
Sbjct: 553 WVSSGILDMYVKCGDMSAAQFAFDSI-PVPDDVAWTTMISGCIENGEEERAFHVFSQMRL 611
Query: 415 NDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWED 474
DEFT +++ KA S L +L QIH+ +K ++ VG+SL++ Y KCGS +D
Sbjct: 612 MGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDD 671
Query: 475 AERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSH 534
A +F ++ ++ +WN+M+ +Q+G ++ + LF++M GI+P TF+ VLSACSH
Sbjct: 672 AYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSH 731
Query: 535 SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWR 594
SGLV + K SM +YGI PE HYSC+ D LGRAG ++ A I ++ ++ +A ++R
Sbjct: 732 SGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYR 791
Query: 595 PLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654
L AACR D + + ++ ++LEL+P D++ YV LSNMYA A + + R +MK +
Sbjct: 792 TLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHK 851
Query: 655 ISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGH---TD------- 704
+ K+PG SWIEV NKI+ F ++S+ + +Y K+K +++ I+ G+ TD
Sbjct: 852 VKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVE 911
Query: 705 -NEKEDRVLYHSERLAVGFGLISLPAKNKFECSRTL 739
EKE + YHSE+LAV FGL+S P + L
Sbjct: 912 EEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNL 947
|
|
| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
Identities = 198/531 (37%), Positives = 316/531 (59%)
Query: 220 TYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGL 279
TYS ++ C S A+ EG + + + N L+ MY+K ++ DA +F+ +
Sbjct: 63 TYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQM 122
Query: 280 VQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGY 339
QRNVISWT +I+ + + ++K L L+ LM D + PN YT++ L SC + + M
Sbjct: 123 PQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM-- 180
Query: 340 MFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRN 399
H +IK G+ FV +A++D+++ LGE +A EM + ++ WN+ I GF +N
Sbjct: 181 -LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGGFAQN 238
Query: 400 QKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVG 459
+++ A+E F +M R ++ T +S+L+AC+ L L Q H IVK ++ ++ +
Sbjct: 239 SRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILN 296
Query: 460 SSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIR 519
++L++ Y KCGS EDA RVF+Q+ DV++W++MI +QNG +++A+ LFE+M G +
Sbjct: 297 NALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTK 356
Query: 520 PTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALI 579
P T + VL ACSH+GL++DG F SM K YGI P HY CM+DLLG+AGKL+ A+
Sbjct: 357 PNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVK 416
Query: 580 FISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGL 639
++ + +P A WR L ACR ++ +AE+ +K+++ LDP+DA Y LSN+YA +
Sbjct: 417 LLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQK 476
Query: 640 QADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIED 699
EE R M+ + I KEPGCSWIEV +I+ F + SH ++ +V +KL QL+ ++
Sbjct: 477 WDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTG 536
Query: 700 IGHT----------DNEK-EDRVLYHSERLAVGFGLISLPAKNKFECSRTL 739
IG+ + E+ ED + +HSE+LA+ FGL++LP + + L
Sbjct: 537 IGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNL 587
|
|
| TAIR|locus:2083631 AT3G15130 "AT3G15130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
Identities = 200/626 (31%), Positives = 351/626 (56%)
Query: 117 KQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTAS-LVNMYAKCGDIKSMVAVV 175
+Q ++ +L C+R+ + G + H + K+ G +T++ L++MY KC + V
Sbjct: 6 RQNLVSILRVCTRKGLSDQGGQVHCYLLKSG-SGLNLITSNYLIDMYCKCREPLMAYKVF 64
Query: 176 KQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAID 235
MP ++ S + L++G+ N + S F ++ + PN +T+ST L CG L+A++
Sbjct: 65 DSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALE 124
Query: 236 EGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFK 295
+G Q+H +K+ + V N+L+ MY KCG + +AE VF +V R++ISW A+I GF
Sbjct: 125 KGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFV 184
Query: 296 QHGDYEKPLRLVCLMREDGID--PNEYTFTVALASCASLRNSHMGYMFHAQVIKRGM--- 350
G K L +M+E I P+E+T T L +C+S + G H +++ G
Sbjct: 185 HAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCP 244
Query: 351 ALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFS 410
+ G+ +VD+Y G ++ A+K ++ K + +SW++ I G+ + + EA+ F
Sbjct: 245 SSATITGS-LVDLYVKCGYLFSARKAFDQI-KEKTMISWSSLILGYAQEGEFVEAMGLFK 302
Query: 411 QMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCG 470
++ ++ D F SSI+ + L +Q+ + VK V +S+++ Y KCG
Sbjct: 303 RLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCG 362
Query: 471 SWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLS 530
++AE+ F+++ DV+SW +I Y ++G +K++ +F +M+ I P +LAVLS
Sbjct: 363 LVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLS 422
Query: 531 ACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTA 590
ACSHSG++++G+++F +++ +GI P HY+C+VDLLGRAG+L+ A I +PIKP
Sbjct: 423 ACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNV 482
Query: 591 PIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLM 650
IW+ L + CR H D+++ + + K +L +D + A YV +SN+Y +AG + R+L
Sbjct: 483 GIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELG 542
Query: 651 KMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQI-EDIGHT------ 703
+K + KE G SW+E+ +++ F S SH P + E LK+ +++ E++G+
Sbjct: 543 NIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHE 602
Query: 704 -----DNEKEDRVLYHSERLAVGFGL 724
D KE+ + HSE+LA+G L
Sbjct: 603 LHDIDDESKEENLRAHSEKLAIGLAL 628
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 230/737 (31%), Positives = 380/737 (51%)
Query: 13 TSSFTFPYPVVEQVKPKKCNHRKTVEVKEPFASYSACQLFNKSPKRAGLSTSDLIFNGYM 72
T++ + P V ++ C +K+ + + F F KS LS + +FN M
Sbjct: 214 TTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKS---GSLSYARKVFN-QM 269
Query: 73 NIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLD---KQFVIEVLS---Y 126
++ NG G + + S++D + +VI + S Y
Sbjct: 270 ETRN-AVTLNGLMV-------GLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEY 321
Query: 127 CSREEC-LELGRRYHALITKTAVCGDQF-VTASLVNMYAKCGDIKSMVAVVKQMPYLDIA 184
EE L+ GR H + T + + LVNMYAKCG I V M D
Sbjct: 322 SLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSV 381
Query: 185 SCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQT 244
S N ++ G +N F +A + + D+ P +T + L+ C SL G+Q+H ++
Sbjct: 382 SWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGES 441
Query: 245 MKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPL 304
+KL +VSNAL+T+Y + G + + +F + + + +SW +II G + P
Sbjct: 442 LKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSII-GALARSERSLPE 500
Query: 305 RLVCLMRED--GIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVD 362
+VC + G N TF+ L++ +SL +G H +K +A A++
Sbjct: 501 AVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIA 560
Query: 363 MYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEF 422
Y GE+ +K M + +V+WN+ I+G+ N+ +A++ M++ D F
Sbjct: 561 CYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSF 620
Query: 423 TYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQL 482
Y+++L A + + +L ++H+ V++ ES+V VGS+L++ Y+KCG + A R F+ +
Sbjct: 621 MYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTM 680
Query: 483 TAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS-TFLAVLSACSHSGLVQDG 541
+ SWNSMI Y+++G+ +A+ LFE M ++G P + TF+ VLSACSH+GL+++G
Sbjct: 681 PVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEG 740
Query: 542 QKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACR 601
K FESM YG+ P H+SCM D+LGRAG+L+ FI +P+KP IWR + AC
Sbjct: 741 FKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGAC- 799
Query: 602 CHSDLKMAEFISK---QILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKE 658
C ++ + AE K + +L+P++A YV L NMYA G D + RK MK ++ KE
Sbjct: 800 CRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKE 859
Query: 659 PGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHT--------DNEKEDR 710
G SW+ + + ++ F + +KSH + +Y+KLK+L +++ D G+ D E+E++
Sbjct: 860 AGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENK 919
Query: 711 --VL-YHSERLAVGFGL 724
+L YHSE+LAV F L
Sbjct: 920 EEILSYHSEKLAVAFVL 936
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
Identities = 203/626 (32%), Positives = 352/626 (56%)
Query: 123 VLSYCSREECLELGRRYHALITKTAVC-GDQFVTASLVNMYAKC-GDIKSMVAVVKQMPY 180
V+ CS + + +GR + KT D V SL++M+ K ++ V +M
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231
Query: 181 LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQL 240
L++ + ++ + +A FFL + + + +T S++ + C L + GKQL
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQL 291
Query: 241 HAQTMKLQYLSKTAVSNALLTMYIKC---GMMEDAESVFEGLVQRNVISWTAIINGFKQH 297
H+ ++ + S L+ MY KC G ++D VF+ + +V+SWTA+I G+ ++
Sbjct: 292 HSWAIRSGLVDDVECS--LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKN 349
Query: 298 GDYE-KPLRLVCLMREDG-IDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDF 355
+ + + L M G ++PN +TF+ A +C +L + +G Q KRG+A
Sbjct: 350 CNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSS 409
Query: 356 VGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN 415
V +++ M+ + +A++ + + + + VS+N + G RN E+A + S++
Sbjct: 410 VANSVISMFVKSDRMEDAQRAFESLSEK-NLVSYNTFLDGTCRNLNFEQAFKLLSEITER 468
Query: 416 DAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDA 475
+ FT++S+L + + S+ EQIHS++VK N V ++LI Y+KCGS + A
Sbjct: 469 ELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTA 528
Query: 476 ERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHS 535
RVF+ + +V+SW SMI ++++G A + + F +M+ EG++P T++A+LSACSH
Sbjct: 529 SRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHV 588
Query: 536 GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRP 595
GLV +G + F SM +++ I P+ HY+CMVDLL RAG L A FI+ +P + +WR
Sbjct: 589 GLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRT 648
Query: 596 LFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655
ACR HS+ ++ + +++ILELDP++ A Y+ LSN+YA AG ++ E R+ MK + +
Sbjct: 649 FLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNL 708
Query: 656 SKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHT------------ 703
KE GCSWIEV +KI++F+ + +H ++Y++L +L+ +I+ G+
Sbjct: 709 VKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEE 768
Query: 704 --DNEKEDRVLY-HSERLAVGFGLIS 726
D +++R+LY HSE++AV FGLIS
Sbjct: 769 ENDEAEKERLLYQHSEKIAVAFGLIS 794
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00024275001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (789 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 742 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-136 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-129 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-72 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-35 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| TIGR00848 | 129 | TIGR00848, fruA, PTS system, fructose subfamily, I | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 423 bits (1089), Expect = e-136
Identities = 198/614 (32%), Positives = 330/614 (53%), Gaps = 13/614 (2%)
Query: 123 VLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLD 182
VL C L GR HA + + D V +L+ MY KCGD+ S V +MP D
Sbjct: 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD 252
Query: 183 IASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHA 242
S N +++GY +N + F + + V P+ T +++++ C L G+++H
Sbjct: 253 CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312
Query: 243 QTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEK 302
+K + +V N+L+ MY+ G +AE VF + ++ +SWTA+I+G++++G +K
Sbjct: 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDK 372
Query: 303 PLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVD 362
L LM +D + P+E T L++CA L + +G H ++G+ V A+++
Sbjct: 373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432
Query: 363 MYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEF 422
MYS I +A + + + +SW + IAG N + EA+ F QM+ +
Sbjct: 433 MYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV 490
Query: 423 TYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQL 482
T + L AC+ + +L ++IH+ ++++ + + ++L++ Y +CG A F+
Sbjct: 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-S 549
Query: 483 TAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQ 542
DVVSWN ++ Y +G+ A+ LF +MV G+ P TF+++L ACS SG+V G
Sbjct: 550 HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609
Query: 543 KVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRC 602
+ F SM ++Y I P HY+C+VDLLGRAGKL A FI+ +PI P +W L ACR
Sbjct: 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI 669
Query: 603 HSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCS 662
H +++ E ++ I ELDP+ Y+ L N+YA+AG + RK M+ ++ +PGCS
Sbjct: 670 HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCS 729
Query: 663 WIEVYNKIYRFFSQNKSHSEMPKV-------YEKLKQL---MQQIEDIGHTDNEKEDRVL 712
W+EV K++ F + ++SH ++ ++ YEK+K + + + K+D
Sbjct: 730 WVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFC 789
Query: 713 YHSERLAVGFGLIS 726
HSERLA+ FGLI+
Sbjct: 790 GHSERLAIAFGLIN 803
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 399 bits (1026), Expect = e-129
Identities = 180/523 (34%), Positives = 302/523 (57%), Gaps = 12/523 (2%)
Query: 220 TYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGL 279
TY ++ C +L +I K ++ + + N +L M++KCGM+ DA +F+ +
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 280 VQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGY 339
+RN+ SW II G G+Y + L M EDG D TF V L + A L ++ G
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244
Query: 340 MFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRN 399
H V+K G+ FV A++DMYS G+I +A+ M + ++V+WN+ +AG+ +
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-KTTVAWNSMLAGYALH 303
Query: 400 QKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVG 459
+EEA+ + +M + + D+FT+S +++ S L L +Q H+ ++++ F ++
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363
Query: 460 SSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIR 519
++L++ Y+K G EDA VF ++ +++SWN++I Y +GR KA+ +FE+M+ EG+
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423
Query: 520 PTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALI 579
P + TFLAVLSAC +SGL + G ++F+SM + + I P HY+CM++LLGR G L+ A
Sbjct: 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483
Query: 580 FISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGL 639
I P KPT +W L ACR H +L++ ++++ + P+ YV L N+Y +G
Sbjct: 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543
Query: 640 QADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIED 699
QA+A + + +K K +S P C+WIEV + + FFS ++ H + ++Y+KL +LM++I +
Sbjct: 544 QAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603
Query: 700 IGHTDNEK---------EDRVL--YHSERLAVGFGLISLPAKN 731
G+ E E++V YHSE+LA+ FGLI+
Sbjct: 604 YGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWT 646
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 6e-72
Identities = 147/509 (28%), Positives = 268/509 (52%), Gaps = 10/509 (1%)
Query: 77 KGISRNGYSTRNDSFPDGFIDDGCSN-TVPVTCYSLESL------LDKQFVIEVLSYCSR 129
+G+S S+ + + + CS+ + LES+ +D+ + + C
Sbjct: 39 RGLSVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEW 98
Query: 130 EECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCL 189
+ +E G R + + + ++++M+ + G++ V +MP D+ S N L
Sbjct: 99 KRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVL 158
Query: 190 LAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQY 249
+ GYAK FD+A + ++ V+P+ YT+ +L CG + + G+++HA ++ +
Sbjct: 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF 218
Query: 250 LSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCL 309
V NAL+TMY+KCG + A VF+ + +R+ ISW A+I+G+ ++G+ + L L
Sbjct: 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFT 278
Query: 310 MREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGE 369
MRE +DP+ T T +++C L + +G H V+K G A+ V +++ MY LG
Sbjct: 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338
Query: 370 IWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILK 429
EA+K M ++ +VSW A I+G+ +N ++A+E ++ M +++ + DE T +S+L
Sbjct: 339 WGEAEKVFSRM-ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397
Query: 430 ACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVS 489
AC+ L L ++H + S V V ++LIE Y+KC + A VF + DV+S
Sbjct: 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVIS 457
Query: 490 WNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMV 549
W S+I N R +A+I F +M++ ++P + T +A LSAC+ G + G+++ + V
Sbjct: 458 WTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEI-HAHV 515
Query: 550 KEYGILPEEAHYSCMVDLLGRAGKLEIAL 578
GI + + ++DL R G++ A
Sbjct: 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAW 544
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 5e-35
Identities = 66/195 (33%), Positives = 110/195 (56%)
Query: 136 GRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAK 195
G++ H + KT V GD FV+ +L++MY+KCGDI+ V MP + N +LAGYA
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302
Query: 196 NALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAV 255
+ ++A + ++ V + +T+S M+ I L+ ++ KQ HA ++ +
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362
Query: 256 SNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGI 315
+ AL+ +Y K G MEDA +VF+ + ++N+ISW A+I G+ HG K + + M +G+
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 316 DPNEYTFTVALASCA 330
PN TF L++C
Sbjct: 423 APNHVTFLAVLSACR 437
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 7e-11
Identities = 43/187 (22%), Positives = 88/187 (47%), Gaps = 3/187 (1%)
Query: 118 QFVIEV-LSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVK 176
QF + + SR LE ++ HA + +T D +LV++Y+K G ++ V
Sbjct: 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384
Query: 177 QMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDE 236
+MP ++ S N L+AGY + +A F ++ V PNH T+ +L+ C ++
Sbjct: 385 RMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444
Query: 237 GKQLHAQTMKLQYLSKTAVSNA-LLTMYIKCGMMEDAESVF-EGLVQRNVISWTAIINGF 294
G ++ + + A+ A ++ + + G++++A ++ + V W A++
Sbjct: 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTAC 504
Query: 295 KQHGDYE 301
+ H + E
Sbjct: 505 RIHKNLE 511
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-10
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 486 DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSH 534
DVV++N++I Y + G+ +A+ LF +M GI+P T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 7e-10
Identities = 48/233 (20%), Positives = 105/233 (45%), Gaps = 10/233 (4%)
Query: 377 LKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPS 436
++E G A + I+ ++ K + E F +MV + T+ +++ C+
Sbjct: 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522
Query: 437 LATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA------ADVVSW 490
+A + + + + V ++LI A + G+ + A V +++ A D ++
Sbjct: 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582
Query: 491 NSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVK 550
+++KA + G+ +A +++ + I+ T + +++CS G +++ M K
Sbjct: 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM-K 641
Query: 551 EYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP---IKPTAPIWRPLFAAC 600
+ G+ P+E +S +VD+ G AG L+ A + + IK + L AC
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 2e-08
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 385 SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKAC 431
V++N I G+ + K EEA++ F++M + + +TYS ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 4e-08
Identities = 72/325 (22%), Positives = 144/325 (44%), Gaps = 21/325 (6%)
Query: 124 LSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDI 183
+S C+ + ++ R L+ + + D + +L++ AK G + +M V +M +
Sbjct: 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV 503
Query: 184 A----SCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQ 239
+ L+ G A+ +AF + + +V+P+ ++ +++ CG A+D
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563
Query: 240 LHAQTMKLQ---YLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVIS----WTAIIN 292
+ A+ MK + AL+ G ++ A+ V++ + + N+ +T +N
Sbjct: 564 VLAE-MKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622
Query: 293 GFKQHGDYEKPLRLVCLMREDGIDPNEYTFT--VALASCASLRNSHMGYMFHAQVIKRGM 350
Q GD++ L + M++ G+ P+E F+ V +A A + + A+ K+G+
Sbjct: 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR--KQGI 680
Query: 351 ALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSAS---SVS-WNAQIAGFFRNQKTEEAI 406
LG ++++ S W+ +L E KS +VS NA I + +A+
Sbjct: 681 KLGTVSYSSLMGACSNAKN-WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739
Query: 407 EAFSQMVRNDAACDEFTYSSILKAC 431
E S+M R + TYS +L A
Sbjct: 740 EVLSEMKRLGLCPNTITYSILLVAS 764
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 7e-08
Identities = 14/42 (33%), Positives = 29/42 (69%)
Query: 283 NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTV 324
+V+++ +I+G+ + G E+ L+L M++ GI PN YT+++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSI 43
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-07
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 182 DIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTML 225
D+ + N L+ GY K ++A F ++ ++PN YTYS ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 488 VSWNSMIKAYSQNGRARKAIILFEKMVVEGI 518
V++NS+I Y + G+ +A+ LF++M +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 3e-05
Identities = 65/308 (21%), Positives = 116/308 (37%), Gaps = 23/308 (7%)
Query: 310 MREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMAL--GDFVGTAIVDMYSGL 367
M G++ N +TF + CA R + F A I R + V A++
Sbjct: 498 MVNAGVEANVHTFGALIDGCA--RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS 555
Query: 368 GEIWEAKKQLKEMGKSASS-----VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEF 422
G + A L EM ++ A + + + A E + + +
Sbjct: 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615
Query: 423 TYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQL 482
Y+ + +CS I+ + K + + S+L++ G D ++ F L
Sbjct: 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV---AGHAGDLDKAFEIL 672
Query: 483 TAAD-------VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHS 535
A VS++S++ A S +KA+ L+E + +RPT ST A+++A
Sbjct: 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732
Query: 536 GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP---IKPTAPI 592
+ +V M K G+ P YS ++ R ++ L +S IKP +
Sbjct: 733 NQLPKALEVLSEM-KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791
Query: 593 WRPLFAAC 600
R + C
Sbjct: 792 CRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 488 VSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT 521
V++N++I + GR +A+ LF++M GI P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (102), Expect = 2e-04
Identities = 43/227 (18%), Positives = 80/227 (35%), Gaps = 10/227 (4%)
Query: 460 SSLIEAYNKCGSWEDAERVF-----SQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMV 514
L A K G E+A + +L + ++ G+ +A+ L EK +
Sbjct: 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122
Query: 515 VEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEA-HYSCMVDLLGRAGK 573
P + L L A G ++ +++E ++ L E A + LL G+
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182
Query: 574 LEIALIFISNLPIKPTAPIWRPLFAACRCHS---DLKMAEFISKQILELDPDDAAVYVTL 630
E AL + L + + A ++ LELDPD+A L
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNL 242
Query: 631 SNMYAEAGLQADAEEQ-RKLMKMKEISKEPGCSWIEVYNKIYRFFSQ 676
+ + E G +A E K +++ G + + + + +
Sbjct: 243 ALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAEALELLEK 289
|
Length = 291 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 4e-04
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 486 DVVSWNSMIKAYSQNGRARKAIILFEKMV 514
DVV++N++I + GR +A+ L ++M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 8e-04
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 257 NALLTMYIKCGMMEDAESVFEGLVQR----NVISWTAIINGF 294
N L+ Y K G +E+A +F + +R NV +++ +I+G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 8e-04
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 285 ISWTAIINGFKQHGDYEKPLRLVCLMREDGI 315
+++ ++I+G+ + G E+ L L M+E G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 8/34 (23%), Positives = 21/34 (61%)
Query: 487 VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRP 520
+ ++N+++ A ++ G A+ + E+M G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|233150 TIGR00848, fruA, PTS system, fructose subfamily, IIA component | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 240 LHAQTM--KLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGF 294
L+ + Q+ SK V L ++ G + D E E L++R T I +G
Sbjct: 2 LNKDLIFLNQQFTSKEDVIKFLANKLLENGYISDTEEFLEDLLKREEEGTTGIGDGV 58
|
4.A.2 The PTS Fructose-Mannitol (Fru) Family Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several putative PTS permeases of unknown specificities. The fructose permeases of this family phosphorylate fructose on the 1-position. Those of family 4.6 phosphorylate fructose on the 6-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This model is specific for the IIA domain of the fructose PTS transporters. Also similar to the Enzyme IIA Fru subunits of the PTS, but included in TIGR01419 rather than this model, is enzyme IIA Ntr (nitrogen), also called PtsN, found in E. coli and other organisms, which may play a solely regulatory role [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]. Length = 129 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 742 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.68 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.67 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.64 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.63 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.6 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.6 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.54 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.52 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.52 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.51 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.45 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.44 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.43 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.43 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.42 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.38 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.38 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.37 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.37 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.36 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.35 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.35 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.27 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.27 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.26 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.26 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.26 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.25 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.24 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.22 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.21 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.17 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.17 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.14 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.13 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.11 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.11 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.11 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.09 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.06 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.05 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.05 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.04 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.03 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.03 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.01 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.99 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.99 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.97 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.96 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.95 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.95 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.94 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.94 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.85 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.81 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.8 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.78 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.78 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.78 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.77 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.76 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.74 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.74 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.68 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.68 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.66 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.66 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.61 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.58 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.58 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.54 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.53 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.53 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.52 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.51 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.45 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.44 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.42 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.41 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.38 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.37 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.36 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.34 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.34 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.33 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.29 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.29 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.28 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.26 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.26 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.26 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.25 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.24 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.22 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.22 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.18 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.17 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.14 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.13 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.08 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.02 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.01 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.98 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.97 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.96 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.94 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.91 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.87 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.85 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.84 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.84 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.83 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.82 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.81 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.8 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.68 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.66 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.65 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.65 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.63 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.62 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.61 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.59 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.59 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.57 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.55 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.51 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.49 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.49 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.48 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.48 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.47 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.44 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.42 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.4 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.38 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.35 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.31 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.3 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.28 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.27 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.25 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.22 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.2 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.19 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.17 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.15 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.13 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.1 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.07 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.04 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.03 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.01 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.0 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.0 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.98 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.97 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.94 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.88 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.88 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.86 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.8 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.79 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.79 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.78 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.78 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.74 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.72 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.72 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.71 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.7 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.7 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.68 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.65 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.58 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.56 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.56 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.54 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.46 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.4 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.22 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.2 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.19 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.04 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.88 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.88 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.79 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.79 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.62 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.53 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.51 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.43 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.42 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.34 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.31 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.3 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.2 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.09 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.03 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.97 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.9 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.75 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.6 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.58 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.52 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.46 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.46 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.39 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.39 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.34 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.33 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.29 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.29 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.12 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.05 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.03 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.96 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.85 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.85 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.73 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.72 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.65 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.64 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.57 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.4 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.99 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.87 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.83 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.81 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.74 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.68 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.68 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.44 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.24 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.66 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.65 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.62 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.51 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.46 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.44 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.34 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.23 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.18 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.7 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.27 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.4 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.28 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.83 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.81 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.79 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.7 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.53 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.33 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.17 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 88.03 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 88.02 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 87.93 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.73 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.46 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.42 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.37 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.26 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 86.67 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.55 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.53 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 86.39 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 86.32 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 86.04 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.8 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.38 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.46 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 84.29 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.09 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 83.86 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 83.79 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 83.61 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.61 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 83.61 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.45 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.69 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 82.62 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 82.36 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 82.24 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.25 | |
| PRK09687 | 280 | putative lyase; Provisional | 81.11 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.84 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 80.37 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-114 Score=999.04 Aligned_cols=687 Identities=30% Similarity=0.549 Sum_probs=676.5
Q ss_pred cccCCCccccchhHhhcccc-------ccccCCCCCCccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCC
Q 044169 30 KCNHRKTVEVKEPFASYSAC-------QLFNKSPKRAGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSN 102 (742)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~-------~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~ 102 (742)
.+..++.+++|++|++|+++ ++|++|++||+++|| .+|.+| ++.|++++|+++|++|...|+.
T Consensus 115 ~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n-~li~~~--------~~~g~~~~A~~~f~~M~~~g~~- 184 (857)
T PLN03077 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWN-VLVGGY--------AKAGYFDEALCLYHRMLWAGVR- 184 (857)
T ss_pred cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHH-HHHHHH--------HhCCCHHHHHHHHHHHHHcCCC-
Confidence 34467889999999999998 899999999999999 999999 9999999999999999999999
Q ss_pred CCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCC
Q 044169 103 TVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLD 182 (742)
Q Consensus 103 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 182 (742)
||..||+.++++|+..+++..+.++|..+.+.|+.||+.++|+||.+|+++|++++|.++|++|+.+|
T Consensus 185 ------------Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d 252 (857)
T PLN03077 185 ------------PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD 252 (857)
T ss_pred ------------CChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 044169 183 IASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTM 262 (742)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 262 (742)
.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.||..+||+|+.+
T Consensus 253 ~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~ 332 (857)
T PLN03077 253 CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM 332 (857)
T ss_pred cchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHH
Q 044169 263 YIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFH 342 (742)
Q Consensus 263 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 342 (742)
|+++|++++|.++|++|..||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++
T Consensus 333 y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~ 412 (857)
T PLN03077 333 YLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH 412 (857)
T ss_pred HHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChH
Q 044169 343 AQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEF 422 (742)
Q Consensus 343 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 422 (742)
+.+.+.|+.++..++++|+++|+++|++++|.++|++|. .+|.++||++|.+|++.|+.++|+.+|++|.. +++||..
T Consensus 413 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~ 490 (857)
T PLN03077 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV 490 (857)
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHh
Confidence 999999999999999999999999999999999999998 89999999999999999999999999999986 5999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Q 044169 423 TYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGR 502 (742)
Q Consensus 423 t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 502 (742)
||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+++ .+|+++||+||.+|++.|+
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 044169 503 ARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFIS 582 (742)
Q Consensus 503 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (742)
.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.++++
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998778999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCccc
Q 044169 583 NLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCS 662 (742)
Q Consensus 583 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s 662 (742)
+|+.+||..+|++|+.+|..+|+.+.++.+.+++++++|+++..|..|+++|+..|+|++|.++++.|+++|++|+||+|
T Consensus 650 ~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s 729 (857)
T PLN03077 650 KMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCS 729 (857)
T ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCCc----------hhhhhhhhhhhHHHHHHHhhccCCCCCc
Q 044169 663 WIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHTD----------NEKEDRVLYHSERLAVGFGLISLPAKNK 732 (742)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p----------~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 732 (742)
||++.+.+|.|.++|.+||+..+||..+.++..+|++.||.| ++||..|++||||||+|||+|+||||+|
T Consensus 730 ~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~ 809 (857)
T PLN03077 730 WVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMP 809 (857)
T ss_pred EEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHhccHHHHHHHhhhcCCCCCe
Confidence 999999999999999999999999999999999999999998 6799999999999999999999999999
Q ss_pred EEEEeccCC
Q 044169 733 FECSRTLEY 741 (742)
Q Consensus 733 ~~~~~~~~~ 741 (742)
|||+|||||
T Consensus 810 i~i~knlr~ 818 (857)
T PLN03077 810 IWVTKNLYM 818 (857)
T ss_pred EEEeCCCEe
Confidence 999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-93 Score=805.37 Aligned_cols=561 Identities=32% Similarity=0.589 Sum_probs=552.2
Q ss_pred CCCcccHHHHHHHHHhCCChHHHHHHHHHchhCC-CCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHH
Q 044169 180 YLDIASCNCLLAGYAKNALFDQAFSFFLKLDGID-VQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNA 258 (742)
Q Consensus 180 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 258 (742)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.+++..|.+.|+.||..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHH
Q 044169 259 LLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMG 338 (742)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 338 (742)
|+.+|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCC
Q 044169 339 YMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAA 418 (742)
Q Consensus 339 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 418 (742)
.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|. .+|+++||++|.+|++.|+.++|+++|++|.+.|+.
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 044169 419 CDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYS 498 (742)
Q Consensus 419 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 498 (742)
||..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHH
Q 044169 499 QNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIAL 578 (742)
Q Consensus 499 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 578 (742)
+.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 044169 579 IFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKE 658 (742)
Q Consensus 579 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~ 658 (742)
+++++|+..|+..+|++++.+|..+|+++.|+.+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|+++.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCCc-----------hhhhhhhhhhhHHHHHHHhhccC
Q 044169 659 PGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHTD-----------NEKEDRVLYHSERLAVGFGLISL 727 (742)
Q Consensus 659 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p-----------~~~~~~l~~~~~~l~~~~~~~~~ 727 (742)
||+||+++.+.+|.|.+++..||+..+||+++.++..+|++.||.| ++|+..|++||||||+|||+|++
T Consensus 563 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~ 642 (697)
T PLN03081 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINT 642 (697)
T ss_pred CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccC
Confidence 9999999999999999999999999999999999999999999999 68999999999999999999999
Q ss_pred CCCCcEEEEeccCC
Q 044169 728 PAKNKFECSRTLEY 741 (742)
Q Consensus 728 ~~~~~~~~~~~~~~ 741 (742)
|||+||||+|||||
T Consensus 643 ~~~~~i~i~knlr~ 656 (697)
T PLN03081 643 SEWTPLQITQSHRI 656 (697)
T ss_pred CCCCeEEEecCCEE
Confidence 99999999999997
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-82 Score=734.27 Aligned_cols=577 Identities=27% Similarity=0.480 Sum_probs=562.9
Q ss_pred CCCCCccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchH
Q 044169 55 SPKRAGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLE 134 (742)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 134 (742)
.+.++..++| .++.+| ++.|++++|+.+|+.|.+.|+. |+..+|..++++|.+.+.+.
T Consensus 46 ~~~~~~~~~n-~~i~~l--------~~~g~~~~A~~l~~~m~~~g~~-------------~~~~~~~~ll~~~~~~~~~~ 103 (857)
T PLN03077 46 SSSSSTHDSN-SQLRAL--------CSHGQLEQALKLLESMQELRVP-------------VDEDAYVALFRLCEWKRAVE 103 (857)
T ss_pred hcccchhhHH-HHHHHH--------HhCCCHHHHHHHHHHHHhcCCC-------------CChhHHHHHHHHHhhCCCHH
Confidence 4466777899 999999 9999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCC
Q 044169 135 LGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDV 214 (742)
Q Consensus 135 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 214 (742)
.|.++|..+.+.|..++..++|+|+.+|+++|+++.|.++|++|+++|+++||++|.+|++.|++++|+++|++|...|+
T Consensus 104 ~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~ 183 (857)
T PLN03077 104 EGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183 (857)
T ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHH
Q 044169 215 QPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGF 294 (742)
Q Consensus 215 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 294 (742)
.||..||+.++++|+..+++..+.+++..+.+.|+.||..++|+|+.+|+++|++++|.++|++|+++|.++||++|.+|
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~ 263 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGY 263 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Q 044169 295 KQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAK 374 (742)
Q Consensus 295 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 374 (742)
++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..+.+.|+.||..+|++|+.+|+++|++++|.
T Consensus 264 ~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 343 (857)
T PLN03077 264 FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343 (857)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCC
Q 044169 375 KQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFES 454 (742)
Q Consensus 375 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~ 454 (742)
++|++|. .||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|
T Consensus 344 ~vf~~m~-~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 344 KVFSRME-TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred HHHhhCC-CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 9999998 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSH 534 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 534 (742)
+..++++|+++|+++|++++|.++|++|.++|+++||++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999986 599999999999999999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044169 535 SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISK 614 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 614 (742)
.|.++.+.+++..+.+ .|+.+|..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|.++++
T Consensus 502 ~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 502 IGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred hchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999977 699999999999999999999999999999998 7999999999999999999999999999
Q ss_pred HHHhc--CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCC
Q 044169 615 QILEL--DPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK-MKEISKEP 659 (742)
Q Consensus 615 ~~~~~--~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~-~~~~~~~~ 659 (742)
+|.+. .| |..+|..++.+|.+.|++++|.++|+.|. +.|+.|+.
T Consensus 579 ~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 579 RMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 99985 46 88999999999999999999999999999 67887763
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-68 Score=603.93 Aligned_cols=474 Identities=22% Similarity=0.375 Sum_probs=459.5
Q ss_pred CCCccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcC-CCCCCCccccccccCCChhhHHHHHHhhccccchHH
Q 044169 57 KRAGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDG-CSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLEL 135 (742)
Q Consensus 57 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 135 (742)
.++.++|+ .+|.+| .+.|++++|+++|+.|...+ +. ||..+|+.++.+|.+.++++.
T Consensus 84 ~~~~~~~~-~~i~~l--------~~~g~~~~Al~~f~~m~~~~~~~-------------~~~~t~~~ll~a~~~~~~~~~ 141 (697)
T PLN03081 84 RKSGVSLC-SQIEKL--------VACGRHREALELFEILEAGCPFT-------------LPASTYDALVEACIALKSIRC 141 (697)
T ss_pred CCCceeHH-HHHHHH--------HcCCCHHHHHHHHHHHHhcCCCC-------------CCHHHHHHHHHHHHhCCCHHH
Confidence 45778999 999999 99999999999999998765 67 899999999999999999999
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCC
Q 044169 136 GRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQ 215 (742)
Q Consensus 136 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 215 (742)
+.++|..|.+.|+.||+.+||.|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.
T Consensus 142 a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 221 (697)
T PLN03081 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221 (697)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHH
Q 044169 216 PNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFK 295 (742)
Q Consensus 216 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 295 (742)
||..||+.++.+|+..|..+.+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+
T Consensus 222 p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~ 301 (697)
T PLN03081 222 AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA 301 (697)
T ss_pred CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Q 044169 296 QHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKK 375 (742)
Q Consensus 296 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 375 (742)
+.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.+++..|.+.|+.+|..++++|+++|+++|++++|.+
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hCCCC
Q 044169 376 QLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVK-SKFES 454 (742)
Q Consensus 376 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~-~~~~~ 454 (742)
+|++|. .||+.+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|
T Consensus 382 vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p 460 (697)
T PLN03081 382 VFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460 (697)
T ss_pred HHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Confidence 999998 8999999999999999999999999999999999999999999999999999999999999999976 69999
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLT-AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSAC 532 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 532 (742)
+..+|++++++|++.|++++|.+++++|. .|+..+|++|+.+|...|+++.|..+++++.+ +.|+ ..+|..+++.|
T Consensus 461 ~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 461 RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLY 538 (697)
T ss_pred CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHH
Confidence 99999999999999999999999999998 88999999999999999999999999999975 5675 47899999999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCC
Q 044169 533 SHSGLVQDGQKVFESMVKEYGILP 556 (742)
Q Consensus 533 ~~~g~~~~a~~~~~~m~~~~~~~p 556 (742)
++.|++++|.++++.|.+ .|+++
T Consensus 539 ~~~G~~~~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 539 NSSGRQAEAAKVVETLKR-KGLSM 561 (697)
T ss_pred HhCCCHHHHHHHHHHHHH-cCCcc
Confidence 999999999999999976 57653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=589.76 Aligned_cols=525 Identities=17% Similarity=0.244 Sum_probs=461.8
Q ss_pred CCccccchhHhhcccc-------ccccCCCCCCccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCc
Q 044169 34 RKTVEVKEPFASYSAC-------QLFNKSPKRAGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPV 106 (742)
Q Consensus 34 ~~~~~~~~~~~~~~~~-------~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 106 (742)
++...+..+++.+.++ ++|++|+.++.+.|+ .+..+. -+..+.+.|..++|+.+|+.|..
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~-~v~~~~---li~~~~~~g~~~eAl~lf~~M~~--------- 434 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMD-KIYHAK---FFKACKKQRAVKEAFRFAKLIRN--------- 434 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCch-HHHHHH---HHHHHHHCCCHHHHHHHHHHcCC---------
Confidence 4555677777777655 899999988887776 655431 01112899999999999999863
Q ss_pred cccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCC----CCC
Q 044169 107 TCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMP----YLD 182 (742)
Q Consensus 107 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~ 182 (742)
||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|. .||
T Consensus 435 --------pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 435 --------PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred --------CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999997 589
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHH--hCCCCChhHHHHHH
Q 044169 183 IASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMK--LQYLSKTAVSNALL 260 (742)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li 260 (742)
..+||.||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++|+
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI 586 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 57899999999999
Q ss_pred HHHHhCCChHHHHHHHhccCC----CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChh
Q 044169 261 TMYIKCGMMEDAESVFEGLVQ----RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSH 336 (742)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 336 (742)
.+|+++|++++|.++|++|.+ ++..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~e 666 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999965 5678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc---CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHh
Q 044169 337 MGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM---GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMV 413 (742)
Q Consensus 337 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 413 (742)
+|.++++.|.+.|+.|+..+|++||.+|+++|++++|.++|++| +..||..+||.||.+|++.|++++|+++|++|.
T Consensus 667 eA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 568999999999999999999999999999999
Q ss_pred HcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHH
Q 044169 414 RNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSM 493 (742)
Q Consensus 414 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 493 (742)
..|+.||..||+.++.+|++.|+++.|.++|..|.+.|+.||..+|++++.+|.+ ++++|.++.+.+.. |+.
T Consensus 747 ~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~-----f~~- 818 (1060)
T PLN03218 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVS-----FDS- 818 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhh-----hhc-
Confidence 9999999999999999999999999999999999999999999999999976442 34555444332221 110
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCC
Q 044169 494 IKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGK 573 (742)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 573 (742)
.......+..+.|+.+|++|.+.|+.||..||+.++.++...+..+.+..+++.|.. .+..|+..+|+++++++++.
T Consensus 819 g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~-- 895 (1060)
T PLN03218 819 GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY-- 895 (1060)
T ss_pred cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--
Confidence 011111223457999999999999999999999999888888889998888888744 47788899999999988432
Q ss_pred HHHHHHHHHhCC---CCCCH
Q 044169 574 LEIALIFISNLP---IKPTA 590 (742)
Q Consensus 574 ~~~A~~~~~~~~---~~p~~ 590 (742)
.++|..++++|. ..|+.
T Consensus 896 ~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 896 DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred hHHHHHHHHHHHHcCCCCCc
Confidence 468999999885 44543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-65 Score=575.73 Aligned_cols=504 Identities=16% Similarity=0.236 Sum_probs=419.9
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCccc-----HHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHH
Q 044169 149 CGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIAS-----CNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYST 223 (742)
Q Consensus 149 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 223 (742)
.++...|..++..+++.|++++|.++|++|+.++... ++.++.+|.+.|..++|+++|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 4566677777778888888888888888887665544 44556668888888888888888863 78888888
Q ss_pred HHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccC----CCCcchHHHHHHHHHhCCC
Q 044169 224 MLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLV----QRNVISWTAIINGFKQHGD 299 (742)
Q Consensus 224 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~ 299 (742)
++.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||..+|+.||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 888888888888888888888888888888888888888888888888888888886 4788888888888888888
Q ss_pred cchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHH--hCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 044169 300 YEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIK--RGMALGDFVGTAIVDMYSGLGEIWEAKKQL 377 (742)
Q Consensus 300 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 377 (742)
+++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888888888888888888888888888888888888888876 567888888888888888888888888888
Q ss_pred Hhc---CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCC
Q 044169 378 KEM---GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFES 454 (742)
Q Consensus 378 ~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~ 454 (742)
+.| ++.|+..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 888 55778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLT----AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLS 530 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 530 (742)
+..+|++|+.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88888888888888888888888888884 68888888888888888888888888888888888888888888888
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHh----hc-------------------CCHHHHHHHHHhCC--
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLG----RA-------------------GKLEIALIFISNLP-- 585 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~----~~-------------------g~~~~A~~~~~~~~-- 585 (742)
+|++.|++++|.++|++|.+ .|+.||..+|++++.++. ++ +..++|..+|++|.
T Consensus 763 a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 88888888888888888866 588888888888886633 22 23588999999986
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 044169 586 -IKPTAPIWRPLFAACRCHSDLKMAEFISKQILEL-DPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEP 659 (742)
Q Consensus 586 -~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 659 (742)
..||..+|+.++.++.+.+..+.+..+++.+... .+.+..+|..|++.+.+. .++|..++++|.+.|+.|+.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 7899999999998777888888888888876543 455889999999987322 36899999999999998765
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=330.02 Aligned_cols=550 Identities=13% Similarity=0.067 Sum_probs=349.9
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHH
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLV 159 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 159 (742)
...|++++|...|+++.+..+. +...+..+...+...|+++.|...+..+.+.. +.+...+..+.
T Consensus 306 ~~~g~~~~A~~~~~~~~~~~p~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 370 (899)
T TIGR02917 306 YQLGNLEQAYQYLNQILKYAPN--------------SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLG 370 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC--------------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 6677777777777777665433 44555666666667777777777777666554 34556667777
Q ss_pred HHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHH
Q 044169 160 NMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDE 236 (742)
Q Consensus 160 ~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 236 (742)
..|.+.|++++|.+.|+++.. .+...|..+...+...|++++|++.|+.+.+... .+......++..+.+.|++++
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~ 449 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDK 449 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHH
Confidence 777777777777777766543 2344566666667777777777777777665431 123334445566666777777
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHC
Q 044169 237 GKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ---RNVISWTAIINGFKQHGDYEKPLRLVCLMRED 313 (742)
Q Consensus 237 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 313 (742)
|..++..+.+.. +.+..++..+...|...|++++|...|+++.+ .+...+..+...+...|++++|.+.|+++.+.
T Consensus 450 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 528 (899)
T TIGR02917 450 ALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI 528 (899)
T ss_pred HHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 777776666542 44556666667777777777777777766533 23445666666666777777777777776654
Q ss_pred CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc--CCCCChhhHHH
Q 044169 314 GIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM--GKSASSVSWNA 391 (742)
Q Consensus 314 g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~ 391 (742)
+ +.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+ ..+.+...|..
T Consensus 529 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 606 (899)
T TIGR02917 529 D-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM 606 (899)
T ss_pred C-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 3 2345566666666666677777777776666553 334455566666677777777777776665 11344556666
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044169 392 QIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGS 471 (742)
Q Consensus 392 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 471 (742)
+...|.+.|++++|...|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..++..+...|+
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 6677777777777777777666543 2344556666666666777777777776666543 3445666666666777777
Q ss_pred HHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 044169 472 WEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESM 548 (742)
Q Consensus 472 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 548 (742)
+++|.++++.+. ..+...+..+...+...|++++|...|+++... .|+..++..+..++.+.|++++|.+.++.+
T Consensus 685 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 762 (899)
T TIGR02917 685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAW 762 (899)
T ss_pred HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777766665 234455666666666677777777777766663 344455566666666677777777766666
Q ss_pred HHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 044169 549 VKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAV 626 (742)
Q Consensus 549 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 626 (742)
.+ ..+.+...+..++..|.+.|++++|.+.|+++. .++++.+++.+...+...|+ .+|...++++++..|+++..
T Consensus 763 l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~ 839 (899)
T TIGR02917 763 LK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAI 839 (899)
T ss_pred HH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHH
Confidence 54 234455566666666777777777777666653 23345666666666666666 56677777776666666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 627 YVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 627 ~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
+..++.+|...|++++|.++++++.+.+.
T Consensus 840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 840 LDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 66666677777777777777766665553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=322.73 Aligned_cols=582 Identities=12% Similarity=0.018 Sum_probs=472.1
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHH
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLV 159 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 159 (742)
...|++++|+..|+++.+.++. +...+..+...+...|+++.|...+..+.+.. +.+...+..+.
T Consensus 272 ~~~~~~~~A~~~~~~~l~~~~~--------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la 336 (899)
T TIGR02917 272 FQKKNYEDARETLQDALKSAPE--------------YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLA 336 (899)
T ss_pred HHhcCHHHHHHHHHHHHHhCCC--------------chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 6789999999999999876644 33445555666778899999999999988874 45667788888
Q ss_pred HHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHH
Q 044169 160 NMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDE 236 (742)
Q Consensus 160 ~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 236 (742)
..+.+.|++++|...++.+.. .+...|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++
T Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 337 SIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHH
Confidence 999999999999999988754 355678888999999999999999999988753 3355667778888889999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHC
Q 044169 237 GKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ---RNVISWTAIINGFKQHGDYEKPLRLVCLMRED 313 (742)
Q Consensus 237 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 313 (742)
|...+..+.+.. +........++..|.+.|++++|..+++.+.. .+...|+.+...+...|++++|...|+++.+.
T Consensus 416 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 494 (899)
T TIGR02917 416 AIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI 494 (899)
T ss_pred HHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 999999988765 33345567788889999999999999988854 35678999999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc--CCCCChhhHHH
Q 044169 314 GIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM--GKSASSVSWNA 391 (742)
Q Consensus 314 g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~ 391 (742)
. +.+...+..+...+...|++++|...++.+.+.+ +.+..++..+...|.+.|+.++|..+|+++ ..+.+...+..
T Consensus 495 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 572 (899)
T TIGR02917 495 E-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALA 572 (899)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHH
Confidence 3 3345567777888889999999999999998765 446778888999999999999999999887 21455677888
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044169 392 QIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGS 471 (742)
Q Consensus 392 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 471 (742)
++..|.+.|++++|..+++++.... +.+..+|..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|+
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKN 650 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 9999999999999999999988753 5567788999999999999999999999988764 4567788889999999999
Q ss_pred HHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 044169 472 WEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESM 548 (742)
Q Consensus 472 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 548 (742)
+++|...|+++. +.+..+|..++..+...|++++|..+++.+.+.+ +++...+..+...+...|++++|.+.|+.+
T Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 651 YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999876 3456789999999999999999999999998864 455677888888999999999999999998
Q ss_pred HHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 044169 549 VKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAV 626 (742)
Q Consensus 549 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 626 (742)
.+ ..|+..++..++.++.+.|++++|.+.++++. .+.+...+..+...|...|+.++|...++++++..|+++.+
T Consensus 730 ~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 806 (899)
T TIGR02917 730 LK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVV 806 (899)
T ss_pred Hh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHH
Confidence 65 34666778889999999999999999988764 34467788888888999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccEEEEcCEEEEEEeCCCCCCChHHHHHHHHHH
Q 044169 627 YVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQL 693 (742)
Q Consensus 627 ~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 693 (742)
+..++++|...|+ ++|.++++++.+.... ++ ..|. .+.......+.+.++.+.++++.++
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~-~~~~----~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLAPN-IP-AILD----TLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-Cc-HHHH----HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999 8899999988765321 11 1111 1112233445666666666666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-24 Score=257.75 Aligned_cols=576 Identities=11% Similarity=0.031 Sum_probs=375.9
Q ss_pred CCCccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCcccc----ccccCCChhhHHHHHHhhccccc
Q 044169 57 KRAGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPVTCY----SLESLLDKQFVIEVLSYCSREEC 132 (742)
Q Consensus 57 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~----~~~~~p~~~~~~~ll~~~~~~~~ 132 (742)
+.|...+. .++..+ .+.|+.++|...+++..+..+.. +.... .....|+........+.+...|+
T Consensus 59 p~~p~~~~-~~~~~~--------l~~g~~~~A~~~l~~l~~~~P~~--~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~ 127 (1157)
T PRK11447 59 PNNPDVIA-ARFRLL--------LRQGDSDGAQKLLDRLSQLAPDS--NAYRSSRTTMLLSTPEGRQALQQARLLATTGR 127 (1157)
T ss_pred CCCHHHHH-HHHHHH--------HhCCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 44566677 888888 99999999999999999877540 00000 00001122223444556788899
Q ss_pred hHHHHHHHHHHHHhccCCChhHHH-HHHHHHHhcCChhHHHHHHccCCC--C-CcccHHHHHHHHHhCCChHHHHHHHHH
Q 044169 133 LELGRRYHALITKTAVCGDQFVTA-SLVNMYAKCGDIKSMVAVVKQMPY--L-DIASCNCLLAGYAKNALFDQAFSFFLK 208 (742)
Q Consensus 133 ~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (742)
+++|.+.++.+.+.. +++..... .+.......|+.++|++.|+++.. | +...+..+...+...|+.++|+..|++
T Consensus 128 ~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~ 206 (1157)
T PRK11447 128 TEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQ 206 (1157)
T ss_pred HHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999999998764 34432211 112223345999999999999874 3 455788888999999999999999999
Q ss_pred chhCCCC----------------CCh---hhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 044169 209 LDGIDVQ----------------PNH---YTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMM 269 (742)
Q Consensus 209 m~~~~~~----------------p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 269 (742)
+...... ++. ..+...+..+-.....+.|...+....+....|+.. .......+...|++
T Consensus 207 ~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~ 285 (1157)
T PRK11447 207 MAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQG 285 (1157)
T ss_pred HhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCH
Confidence 8653210 000 011122222222233444555555444332223221 12345567778888
Q ss_pred HHHHHHHhccCC--C-CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHhccC
Q 044169 270 EDAESVFEGLVQ--R-NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDP-NEYTF------------TVALASCASLR 333 (742)
Q Consensus 270 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~------------~~ll~~~~~~~ 333 (742)
++|+..|++..+ | +...+..+...+.+.|++++|+..|++..+..... +...+ ......+.+.|
T Consensus 286 ~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g 365 (1157)
T PRK11447 286 GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKAN 365 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCC
Confidence 888888887754 2 56678888888888888888888888887653221 11111 11123456778
Q ss_pred ChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CC-CCChhhHHHHHHHHHhCCCcHHHHHHHHH
Q 044169 334 NSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GK-SASSVSWNAQIAGFFRNQKTEEAIEAFSQ 411 (742)
Q Consensus 334 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 411 (742)
++++|...++.+++.. +.+...+..+...|...|++++|++.|++. .. +.+...+..+...|. .++.++|+.+++.
T Consensus 366 ~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~ 443 (1157)
T PRK11447 366 NLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIAS 443 (1157)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHh
Confidence 8888888888888764 345566677788888888888888888876 22 333455666666664 4567888877766
Q ss_pred HhHcCCC--------CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044169 412 MVRNDAA--------CDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT 483 (742)
Q Consensus 412 m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 483 (742)
+...... .....+..+...+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|...|+++.
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5432100 011234445566677888888888888877754 3345667777888888888888888888764
Q ss_pred ---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 044169 484 ---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS---------TFLAVLSACSHSGLVQDGQKVFESMVKE 551 (742)
Q Consensus 484 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 551 (742)
..+...+..+...+...++.++|+..++++......++.. .+......+...|+.++|.++++.
T Consensus 523 ~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---- 598 (1157)
T PRK11447 523 QQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---- 598 (1157)
T ss_pred HcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----
Confidence 2244455555555667788888888877654332222211 123345567777888888877652
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 044169 552 YGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVT 629 (742)
Q Consensus 552 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 629 (742)
.+++...+..+.+.|.+.|++++|++.|++.. ..| +...+..+...+...|++++|++.++++++..|+++..+..
T Consensus 599 --~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~ 676 (1157)
T PRK11447 599 --QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRR 676 (1157)
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 23445566677788888888888888887754 334 56777778888888888888888888888888877888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 630 LSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 630 l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
++.++...|++++|.++++++....
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 8888888888888888888776544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-23 Score=243.86 Aligned_cols=547 Identities=12% Similarity=0.051 Sum_probs=408.0
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChh-hHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHH
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQ-FVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASL 158 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 158 (742)
...|++++|+..|+++...++. +.. ............++.++|...++.+.+.. +.+...+..+
T Consensus 123 ~~~g~~~eA~~~~~~~l~~~p~--------------~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L 187 (1157)
T PRK11447 123 ATTGRTEEALASYDKLFNGAPP--------------ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL 187 (1157)
T ss_pred HhCCCHHHHHHHHHHHccCCCC--------------ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 7899999999999999876543 322 11111222334689999999999999885 5577788999
Q ss_pred HHHHHhcCChhHHHHHHccCCCCCc------ccH-----------------HHHHHHHHhCCChHHHHHHHHHchhCCCC
Q 044169 159 VNMYAKCGDIKSMVAVVKQMPYLDI------ASC-----------------NCLLAGYAKNALFDQAFSFFLKLDGIDVQ 215 (742)
Q Consensus 159 i~~~~~~g~~~~A~~~f~~~~~~~~------~~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 215 (742)
..++...|+.++|+..|+++...+. ..| ...+..+-.......|...+..+......
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 9999999999999999998753211 111 11111111122244555555555433222
Q ss_pred CChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC--CCc---chHHHH
Q 044169 216 PNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ--RNV---ISWTAI 290 (742)
Q Consensus 216 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l 290 (742)
|+... ......+...|++++|...+++.++.. +.+...+..|..+|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 268 p~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 268 PAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred cchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 32221 123455677899999999999999875 55788899999999999999999999998855 221 123222
Q ss_pred ------------HHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHH
Q 044169 291 ------------INGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGT 358 (742)
Q Consensus 291 ------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 358 (742)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 346778999999999999998863 3345667778888999999999999999999864 33455666
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCC-C----------ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHH
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEMGKS-A----------SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSI 427 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~~~~-~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 427 (742)
.+...|. .++.++|..+++.+... + ....+..+...+...|++++|++.|++..+.. +-+...+..+
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~L 501 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRL 501 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 7777775 46789999998876311 0 12235556778889999999999999998864 2245567788
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----Cc---------hHHHHHH
Q 044169 428 LKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAA----DV---------VSWNSMI 494 (742)
Q Consensus 428 l~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li 494 (742)
...+...|+.++|...++.+.+.. +.+...+..+...+.+.|+.++|...++.+... +. ..+..+.
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 889999999999999999988754 334555555666678899999999999988632 11 1123456
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCH
Q 044169 495 KAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKL 574 (742)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 574 (742)
..+...|+.++|+.+++. .+++...+..+...+.+.|++++|++.|+.+.+. -+.+...+..++.+|...|++
T Consensus 581 ~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCH
Confidence 778899999999999872 2445566778888999999999999999999763 344577889999999999999
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhcCCHHHHHHH
Q 044169 575 EIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDA------AVYVTLSNMYAEAGLQADAEEQ 646 (742)
Q Consensus 575 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~y~~~g~~~~A~~~ 646 (742)
++|++.++... ..| +...+..+..++...|++++|.+.++++++..|+++ ..+..++.++...|++++|.+.
T Consensus 654 ~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 654 AAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999865 344 466677788889999999999999999999876544 3667789999999999999999
Q ss_pred HHHHHh-CCC
Q 044169 647 RKLMKM-KEI 655 (742)
Q Consensus 647 ~~~m~~-~~~ 655 (742)
+++... .++
T Consensus 734 y~~Al~~~~~ 743 (1157)
T PRK11447 734 YKDAMVASGI 743 (1157)
T ss_pred HHHHHhhcCC
Confidence 988863 344
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-20 Score=214.42 Aligned_cols=541 Identities=9% Similarity=-0.031 Sum_probs=384.2
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHH
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLV 159 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 159 (742)
...|++++|++.|++.++..+. +..++..+..++...|+.++|....+..++.. +.|...+..+.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~--------------n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La 119 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPD--------------NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLA 119 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 3459999999999999998876 68889999999999999999999999999874 23444444442
Q ss_pred HHHHhcCChhHHHHHHccCCC--C-CcccHHHHHHH--------HHhCCChHHHHHHHHHchhCCCCCChhhHHHH-HHH
Q 044169 160 NMYAKCGDIKSMVAVVKQMPY--L-DIASCNCLLAG--------YAKNALFDQAFSFFLKLDGIDVQPNHYTYSTM-LAI 227 (742)
Q Consensus 160 ~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-l~~ 227 (742)
. .++.++|..+++++.. | +...+..+... |.+. ++|.+.++ .......|+..+.... .+.
T Consensus 120 -~---i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 120 -A---IPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQR 191 (987)
T ss_pred -H---hccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHH
Confidence 2 2899999999999864 3 34444444444 5555 55555555 3333334455555555 899
Q ss_pred HccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-CCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHH
Q 044169 228 CGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIK-CGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRL 306 (742)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 306 (742)
+...+++++|..++..+.+.+ +.+......|..+|.. .++ +++..+++...+.|...+..+...|.+.|+.++|..+
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~ 269 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHY 269 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999987 4456667778788888 477 8888888776567888999999999999999999999
Q ss_pred HHHHHHCCCC-CCHHHHHHH------------------------------HHHHhccCChhHHHHHHH------------
Q 044169 307 VCLMREDGID-PNEYTFTVA------------------------------LASCASLRNSHMGYMFHA------------ 343 (742)
Q Consensus 307 ~~~m~~~g~~-p~~~t~~~l------------------------------l~~~~~~~~~~~a~~i~~------------ 343 (742)
++++...-.. |+..++.-+ +..+.+.++++.+.++..
T Consensus 270 L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 349 (987)
T PRK09782 270 LIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERY 349 (987)
T ss_pred HHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHH
Confidence 9998654222 333332222 223334444444433321
Q ss_pred -----------------HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcC-CCCC----hhhHHHHHHHHHhCCC
Q 044169 344 -----------------QVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMG-KSAS----SVSWNAQIAGFFRNQK 401 (742)
Q Consensus 344 -----------------~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~li~~~~~~g~ 401 (742)
.+.+. .+.+....--+.....+.|+.++|.++|+..- .+++ ...-+-++..|.+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred hhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 11110 01122222233334456788888888888772 1222 2334467777777766
Q ss_pred ---cHHHHHH------------HH----------HHhH-cCC-CC--ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q 044169 402 ---TEEAIEA------------FS----------QMVR-NDA-AC--DEFTYSSILKACSLLPSLATCEQIHSRIVKSKF 452 (742)
Q Consensus 402 ---~~~A~~~------------~~----------~m~~-~g~-~p--~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~ 452 (742)
..+++.+ .. .... .+. ++ +...+..+..++.. ++.++|...+.......
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~- 506 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ- 506 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-
Confidence 3344333 11 1111 111 22 45556666655555 78888988777776653
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 044169 453 ESNVHVGSSLIEAYNKCGSWEDAERVFSQLT--AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVL 529 (742)
Q Consensus 453 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 529 (742)
|+......+...+...|++++|...|+++. .++...+..+..++.+.|++++|...+++.++. .|+. ..+..+.
T Consensus 507 -Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La 583 (987)
T PRK09782 507 -PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLH 583 (987)
T ss_pred -CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHH
Confidence 554444445555678999999999999776 345556777788889999999999999999885 3554 3344444
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHH
Q 044169 530 SACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLK 607 (742)
Q Consensus 530 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~ 607 (742)
......|++++|...+++..+ ..|+...+..+..++.+.|++++|+..+++.. ..| +...+..+..++...|+++
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 555567999999999999864 45678889999999999999999999998864 455 4667788888899999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 608 MAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 608 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+|+..++++++.+|+++..+..++.+|...|++++|...+++..+..
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999887544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-19 Score=202.37 Aligned_cols=551 Identities=10% Similarity=0.019 Sum_probs=398.9
Q ss_pred CccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHH
Q 044169 59 AGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRR 138 (742)
Q Consensus 59 ~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 138 (742)
+...+. .+...| .+.|++++|+..+++..+..+. |.. |..++..+ ++...|..
T Consensus 77 n~~~~~-~LA~~y--------l~~g~~~~A~~~~~kAv~ldP~--------------n~~-~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 77 NIPLTL-YLAEAY--------RHFGHDDRARLLLEDQLKRHPG--------------DAR-LERSLAAI---PVEVKSVT 129 (987)
T ss_pred CHHHHH-HHHHHH--------HHCCCHHHHHHHHHHHHhcCcc--------------cHH-HHHHHHHh---ccChhHHH
Confidence 455677 899999 9999999999999999886633 444 44444333 78889999
Q ss_pred HHHHHHHhccCCChhHHHHHHHH--------HHhcCChhHHHHHHccCCCCC--cccHH-HHHHHHHhCCChHHHHHHHH
Q 044169 139 YHALITKTAVCGDQFVTASLVNM--------YAKCGDIKSMVAVVKQMPYLD--IASCN-CLLAGYAKNALFDQAFSFFL 207 (742)
Q Consensus 139 ~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~f~~~~~~~--~~~~~-~li~~~~~~g~~~~A~~~~~ 207 (742)
+++.+.+.. +.+..++..+... |.+.+...++++ .+...++ ..... .+...|.+.|++++|++++.
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999999885 4556666666665 777776666766 3333333 33334 44889999999999999999
Q ss_pred HchhCCCCCChhhHHHHHHHHcc-CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC-----
Q 044169 208 KLDGIDVQPNHYTYSTMLAICGS-LSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ----- 281 (742)
Q Consensus 208 ~m~~~~~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 281 (742)
++.+.+ +.+..-...+-.++.. .++ +.+..++.. .+..+..+...+.+.|.+.|+.++|..+++++..
T Consensus 207 ~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 999986 3344445556667776 366 777777543 3346888999999999999999999999998843
Q ss_pred CCcchHH------------------------------HHHHHHHhCCCcchHHHHHH-----------------------
Q 044169 282 RNVISWT------------------------------AIINGFKQHGDYEKPLRLVC----------------------- 308 (742)
Q Consensus 282 ~~~~~~~------------------------------~li~~~~~~g~~~~A~~~~~----------------------- 308 (742)
|+..+|- .++..+.+.++++.+.++..
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 1111111 12444555555554443321
Q ss_pred ------HHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHh-C-CCCchHHHHHHHHHHHhCCC---HHHHHHH-
Q 044169 309 ------LMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKR-G-MALGDFVGTAIVDMYSGLGE---IWEAKKQ- 376 (742)
Q Consensus 309 ------~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~- 376 (742)
.|... .+-+....--+--...+.|+.++|.+++...... + -..+......|+..|.+.+. ..++..+
T Consensus 361 ~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 361 ALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 11111 0012222222222345668888899888887762 1 22355566688888888766 2333222
Q ss_pred ------------------------HHhc-CC-CC--ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHH
Q 044169 377 ------------------------LKEM-GK-SA--SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSIL 428 (742)
Q Consensus 377 ------------------------~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 428 (742)
+... +. ++ +...|..+..++.. ++.++|+..+.+.... .|+......+.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA 516 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVA 516 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHH
Confidence 1111 21 33 56677888877776 8999999988887765 46665544555
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHH---HHHHHHHHcCCHHH
Q 044169 429 KACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWN---SMIKAYSQNGRARK 505 (742)
Q Consensus 429 ~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~ 505 (742)
..+...|++++|...++.+... +|+...+..+...+.+.|++++|...|++....++..++ .+.......|++++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHH
Confidence 5567899999999999987654 444455667788899999999999999988744333333 33334445699999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044169 506 AIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 506 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
|+..+++..+ ..|+...+..+..++.+.|++++|+..+++..+ --+.+...+..+..++...|++++|++.+++..
T Consensus 595 Al~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 595 ALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998 478888899999999999999999999999975 234456678889999999999999999999864
Q ss_pred -CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 586 -IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 586 -~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
..| +...+..+..++...|++++|+..++++++++|++..+....+++.....+++.|.+.+++.-...+
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 455 5788999999999999999999999999999999999999999999999999999998877665444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-20 Score=189.30 Aligned_cols=443 Identities=14% Similarity=0.138 Sum_probs=350.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 044169 187 NCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKC 266 (742)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (742)
..|..-..+.|++++|.+.-...-+.+ +.+..+...+-..+.+..+++...+--...++.. +.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 344455567788888877654443332 2233333333344555555555444433333332 33466788888999999
Q ss_pred CChHHHHHHHhccCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHH-HHhccCChhHHHHHH
Q 044169 267 GMMEDAESVFEGLVQ---RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALA-SCASLRNSHMGYMFH 342 (742)
Q Consensus 267 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~i~ 342 (742)
|++++|+..++.+.+ ..+..|-.+..++...|+.+.|.+.|.+..+ +.|+.....+-+. .....|++++|...+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 999999999988865 3567899999999999999999999988876 4677665544333 334468888998888
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CCCCC-hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCC
Q 044169 343 AQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GKSAS-SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACD 420 (742)
Q Consensus 343 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 420 (742)
...++.. +--...|+.|...+-..|++..|+..|++. ...|+ ...|-.+...|...+.+++|+..+.+.... .|+
T Consensus 208 lkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn 284 (966)
T KOG4626|consen 208 LKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPN 284 (966)
T ss_pred HHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCc
Confidence 8777653 233567888888999999999999999887 33454 568888999999999999999999887764 454
Q ss_pred -hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-CchHHHHHHH
Q 044169 421 -EFTYSSILKACSLLPSLATCEQIHSRIVKSKFESN-VHVGSSLIEAYNKCGSWEDAERVFSQLT--AA-DVVSWNSMIK 495 (742)
Q Consensus 421 -~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~ 495 (742)
.+.+..+...|-.+|.++.|+.-+++..+. +|+ ...|+.|..++-..|++.+|.+.+.+.. .| -..+.+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 567888888899999999999999999875 454 6889999999999999999999999876 33 4568899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH-HHHHHHHHHHhhcCC
Q 044169 496 AYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEE-AHYSCMVDLLGRAGK 573 (742)
Q Consensus 496 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~ 573 (742)
.|...|.+++|..+|....+ +.|.. ..++.|...|-++|++++|+..+++.+ .+.|+. ..|+.+...|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999988 67876 569999999999999999999999986 577874 489999999999999
Q ss_pred HHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 044169 574 LEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 574 ~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 643 (742)
.+.|+..+.+.. ..|. ....+.|.+.|...|+..+|++.|+.+++++|+.+.+|..++.+..-..+|.+-
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 999999998754 6675 678899999999999999999999999999999999999999888777776663
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.6e-19 Score=176.05 Aligned_cols=418 Identities=12% Similarity=0.152 Sum_probs=335.0
Q ss_pred HHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCC---CcchHHHHHHHHHhCCC
Q 044169 223 TMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQR---NVISWTAIINGFKQHGD 299 (742)
Q Consensus 223 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~ 299 (742)
.+..-..+.|++++|++.-..+-..+ +.+....-.+-..+....+++.....-....+. -..+|..+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444556788888877655544332 222223333334566666666544332222222 35679999999999999
Q ss_pred cchHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHH
Q 044169 300 YEKPLRLVCLMREDGIDP-NEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGT-AIVDMYSGLGEIWEAKKQL 377 (742)
Q Consensus 300 ~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~ 377 (742)
.++|+.+++.+.+. +| ....|..+..++...|+.+.|.+.|.+.++. .|+..... -+-......|++.+|...+
T Consensus 132 ~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999986 45 4668888999999999999999999988875 45444333 3445556689999998888
Q ss_pred Hhc-CCCCC-hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCC
Q 044169 378 KEM-GKSAS-SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACD-EFTYSSILKACSLLPSLATCEQIHSRIVKSKFES 454 (742)
Q Consensus 378 ~~~-~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~ 454 (742)
.+. ...|. .+.|+.+...+..+|+...|+..|++.... .|+ ...|..|...|...+.++.|...+.+..... +.
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 775 32444 678999999999999999999999998874 455 4578888888999999999999888777643 33
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLT--AAD-VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLS 530 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 530 (742)
...++..+...|...|.++-|.+.+++.. +|+ ...|+.|..++-..|++.+|...|.+.+. +.|+. ...+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 46778888889999999999999999887 444 45999999999999999999999999998 56765 67899999
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEE-AHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLK 607 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~ 607 (742)
.+...|.+++|..+|.... .+.|+. ...+.|...|..+|++++|+..+++.. ++|+ ..+++.+...|...|+.+
T Consensus 363 i~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 9999999999999999885 455654 468899999999999999999998854 7887 678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 608 MAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 608 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
.|.+.+.+++..+|.-+.++..|+.+|-.+|+..+|+.-++...+.
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999887753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-17 Score=184.23 Aligned_cols=421 Identities=11% Similarity=-0.001 Sum_probs=298.8
Q ss_pred hhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCC---CcchHHHHHHHHH
Q 044169 219 YTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQR---NVISWTAIINGFK 295 (742)
Q Consensus 219 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~ 295 (742)
..+......+.+.|+++.|...|...++. .|+...|..+..+|.+.|++++|+..++...+. +...|..+..+|.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34556677788899999999999998875 567788899999999999999999999887653 4567888999999
Q ss_pred hCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Q 044169 296 QHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKK 375 (742)
Q Consensus 296 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 375 (742)
..|++++|+.-|......+-..+ .....++..... ..+........+.. +.+...+..+.. |...........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRN-EQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence 99999999998877655421111 111222211111 11222222222221 112222222222 222111111111
Q ss_pred HHHhc-CCCCC-hhhHHHHHHH---HHhCCCcHHHHHHHHHHhHcC-CCC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 044169 376 QLKEM-GKSAS-SVSWNAQIAG---FFRNQKTEEAIEAFSQMVRND-AAC-DEFTYSSILKACSLLPSLATCEQIHSRIV 448 (742)
Q Consensus 376 ~~~~~-~~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 448 (742)
-++.. ...+. ...+..+... ....+++++|++.|++....+ ..| ....+..+...+...|++++|...++...
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11111 11111 1111111111 123478999999999998765 234 34567777778889999999999999998
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HH
Q 044169 449 KSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-ST 524 (742)
Q Consensus 449 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t 524 (742)
+.. +.....|..+..++...|++++|...|++.. +.+...|..+...+...|++++|+..|++.++. .|+. ..
T Consensus 359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~ 435 (615)
T TIGR00990 359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFS 435 (615)
T ss_pred HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHH
Confidence 763 3346688889999999999999999999875 345678999999999999999999999999984 5654 66
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HH-------HHHH
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-AP-------IWRP 595 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~-------~~~~ 595 (742)
+..+..++.+.|++++|+..|++..+ ..+.+...+..+..++...|++++|++.|++.. ..|+ .. .++.
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 77788899999999999999999876 334457788999999999999999999998853 3332 11 1222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 596 LFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 596 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
....+...|++++|...++++++++|++..++..++.+|...|++++|.+.+++..+.
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2223445699999999999999999999999999999999999999999999988653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-16 Score=167.32 Aligned_cols=547 Identities=12% Similarity=0.064 Sum_probs=399.5
Q ss_pred cchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhc--cccchHHHHHHHHHHHHhc--cCCChhHHHHHHH
Q 044169 85 STRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCS--REECLELGRRYHALITKTA--VCGDQFVTASLVN 160 (742)
Q Consensus 85 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~ 160 (742)
.+.|...|....+..+. | ....+.+||. ..+++..|..+|..++... ..||+.+.. ..
T Consensus 146 ~~~A~a~F~~Vl~~sp~--------------N--il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgi--g~ 207 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD--------------N--ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGI--GH 207 (1018)
T ss_pred HHHHHHHHHHHHhhCCc--------------c--hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchh--hh
Confidence 47888888888776532 3 3455666664 5579999999999866543 456665533 36
Q ss_pred HHHhcCChhHHHHHHccCCCCCcccHHHHHHHHH---h---CCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCCh
Q 044169 161 MYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYA---K---NALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAI 234 (742)
Q Consensus 161 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~---~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 234 (742)
.+.++|+.+.|...|.+..+.|..+-++++.... . ...+..++.++...-... +-|+...+.|..-+.-.|++
T Consensus 208 Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy 286 (1018)
T KOG2002|consen 208 CFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDY 286 (1018)
T ss_pred HHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccH
Confidence 6789999999999999988877766555554321 1 233666777776665543 45777888888999999999
Q ss_pred HHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhCCChHHHHHHHhccCCC--C--cchHHHHHHHHHhCCCcchHHHHHH
Q 044169 235 DEGKQLHAQTMKLQYLS--KTAVSNALLTMYIKCGMMEDAESVFEGLVQR--N--VISWTAIINGFKQHGDYEKPLRLVC 308 (742)
Q Consensus 235 ~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~g~~~~A~~~~~ 308 (742)
..+..+...+....... -...+--+.++|-..|++++|...|.+..+. | +..+-.+...|.+.|+.+.+...|+
T Consensus 287 ~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fE 366 (1018)
T KOG2002|consen 287 ERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFE 366 (1018)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHH
Confidence 99999999988765221 1334677889999999999999999877552 2 4456678899999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccC----ChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC------HHHHHHHHH
Q 044169 309 LMREDGIDPNEYTFTVALASCASLR----NSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGE------IWEAKKQLK 378 (742)
Q Consensus 309 ~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~------~~~A~~~~~ 378 (742)
...+. .+-+..|...+-..|+..+ ..+.|..+.....+.- +.|...|-.+..+|....- +..|..++.
T Consensus 367 kv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~ 444 (1018)
T KOG2002|consen 367 KVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILE 444 (1018)
T ss_pred HHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 99875 3445567777777777664 3455555555555543 4566777777777766543 334444444
Q ss_pred hcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHc---CCCCCh------HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 044169 379 EMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN---DAACDE------FTYSSILKACSLLPSLATCEQIHSRIVK 449 (742)
Q Consensus 379 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~------~t~~~ll~~~~~~g~~~~a~~i~~~~~~ 449 (742)
..+..+.....|.+.......|.+++|...|.+.... ...+|. .+--.+....-..++.+.|.+.|..+.+
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4444677788899999999999999999999987664 223333 2233345555667899999999999988
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHH
Q 044169 450 SKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEG-IRPTNSTF 525 (742)
Q Consensus 450 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~ 525 (742)
.. +.-+..|--++.+.-..+.+.+|...+.... ..++..|.-+...|.....+..|.+-|....+.- ..+|..+.
T Consensus 525 eh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 525 EH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred HC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 64 2223444444433344467888998888776 5677788888888998888888888777665432 23677777
Q ss_pred HHHHHHHhc------------cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHH
Q 044169 526 LAVLSACSH------------SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAP 591 (742)
Q Consensus 526 ~~ll~a~~~------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~ 591 (742)
..|.+.|.. .+..++|+++|.++++ ..+.|...-+.+.-+++..|++.+|.++|.+.. ...+..
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d 681 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED 681 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc
Confidence 777665543 2346788888888876 445677777888899999999999999998875 234567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 592 IWRPLFAACRCHSDLKMAEFISKQILELD--PDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
+|..+...|...|++..|+++|+..+... .+++.+...|+.++.+.|++.+|.+.........+
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999998853 45788999999999999999999998877665443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-16 Score=167.46 Aligned_cols=555 Identities=12% Similarity=0.053 Sum_probs=398.2
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHH
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLV 159 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 159 (742)
...+++..|+.+|...+...+. .+||. ...+-.++.+.++.+.|+.-|..+.+.. +.++.++-+|.
T Consensus 175 ynkkdY~~al~yyk~al~inp~-----------~~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~ 240 (1018)
T KOG2002|consen 175 YNKKDYRGALKYYKKALRINPA-----------CKADV--RIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALG 240 (1018)
T ss_pred hccccHHHHHHHHHHHHhcCcc-----------cCCCc--cchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHH
Confidence 3568999999999998765543 11444 3344567788899999999999998874 22333333333
Q ss_pred HHHHhcCC---hhHHHHHHccCC---CCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCC--CCChhhHHHHHHHHccC
Q 044169 160 NMYAKCGD---IKSMVAVVKQMP---YLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDV--QPNHYTYSTMLAICGSL 231 (742)
Q Consensus 160 ~~~~~~g~---~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~ 231 (742)
-+-....+ +..+..++...- ..|++..+.|...|.-.|++..+.++...+..... ..-+..|-.+.+++-..
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 22223333 444555554432 35788899999999999999999999998876431 12245577888999999
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC--C-CcchHHHHHHHHHhCC----CcchHH
Q 044169 232 SAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ--R-NVISWTAIINGFKQHG----DYEKPL 304 (742)
Q Consensus 232 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~ 304 (742)
|++++|...|.+..+..-..-+..+--|..+|.+.|+++.|...|+.+.. | +..+.-.+...|...+ ..++|.
T Consensus 321 Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~ 400 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKAS 400 (1018)
T ss_pred ccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHH
Confidence 99999999998887764222233446788999999999999999999855 3 4455555666666654 345666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHH----HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc
Q 044169 305 RLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQ----VIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM 380 (742)
Q Consensus 305 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~----~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 380 (742)
.++.+..+. .+.|...|..+-..+-.. +.......+.. +...+.++.+.+.|.+...+...|.+.+|...|+..
T Consensus 401 ~~l~K~~~~-~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 401 NVLGKVLEQ-TPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHhc-ccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 666666554 244566666665555544 33333555543 445666788999999999999999999999999876
Q ss_pred -CC-----CCCh------hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCCh-HHHHHHHHHhcCCCCHHHHHHHHHHH
Q 044169 381 -GK-----SASS------VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDE-FTYSSILKACSLLPSLATCEQIHSRI 447 (742)
Q Consensus 381 -~~-----~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~i~~~~ 447 (742)
+. .+|. .+--.+...+-..++.+.|.+.|..+.... |.- ..|..++......++..+|...+..+
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~ 556 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDA 556 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHH
Confidence 11 2222 122234556667789999999999998863 443 34555554444567888899988888
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCchHHHHHHHHHHH------------cCCHHHHHHHH
Q 044169 448 VKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT-----AADVVSWNSMIKAYSQ------------NGRARKAIILF 510 (742)
Q Consensus 448 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~------------~g~~~~A~~~~ 510 (742)
.... ..++.+++.+...|.+...+..|.+-|..+. .+|..+.-+|...|.+ .+..++|+++|
T Consensus 557 l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y 635 (1018)
T KOG2002|consen 557 LNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLY 635 (1018)
T ss_pred Hhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 7754 5666777778888998888888888555543 3455555555554432 24577899999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC----C
Q 044169 511 EKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP----I 586 (742)
Q Consensus 511 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~ 586 (742)
.+.++. -+-|...-+.+.-.++..|++.+|..+|.+..+.. .....+|-.+..+|..+|++-.|+++|+... .
T Consensus 636 ~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~ 712 (1018)
T KOG2002|consen 636 GKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK 712 (1018)
T ss_pred HHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 998875 23455777888888999999999999999997642 2345578889999999999999999998754 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh-------------------cCCHHHHHHHH
Q 044169 587 KPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAE-------------------AGLQADAEEQR 647 (742)
Q Consensus 587 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~-------------------~g~~~~A~~~~ 647 (742)
+.+..+...|..++...|.+.+|.+.+..++.+.|.|+.....++-...+ .+..+.|.++|
T Consensus 713 ~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F 792 (1018)
T KOG2002|consen 713 KNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLF 792 (1018)
T ss_pred cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999887776655433 34567888899
Q ss_pred HHHHhCCCC
Q 044169 648 KLMKMKEIS 656 (742)
Q Consensus 648 ~~m~~~~~~ 656 (742)
..+...+-+
T Consensus 793 ~~ls~~~d~ 801 (1018)
T KOG2002|consen 793 TELSKNGDK 801 (1018)
T ss_pred HHHHhcCCC
Confidence 888866543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-18 Score=181.15 Aligned_cols=291 Identities=14% Similarity=0.112 Sum_probs=223.8
Q ss_pred HHHhCCCHHHHHHHHHhc-CCC-CChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCC---hHHHHHHHHHhcCCCCH
Q 044169 363 MYSGLGEIWEAKKQLKEM-GKS-ASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACD---EFTYSSILKACSLLPSL 437 (742)
Q Consensus 363 ~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~ 437 (742)
.+...|++++|...|+++ ... .+..++..+...+...|++++|..+++.+...+..++ ..++..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 345667777777777776 222 3445677777888888888888888888776532221 24566777778888888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C------chHHHHHHHHHHHcCCHHHHHHH
Q 044169 438 ATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAA--D------VVSWNSMIKAYSQNGRARKAIIL 509 (742)
Q Consensus 438 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~ 509 (742)
+.|..++..+.+.. +.+..++..++.+|.+.|++++|.+.++.+... + ...|..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888888877653 445677888888888888888888888877522 1 11355677788899999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 044169 510 FEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE--EAHYSCMVDLLGRAGKLEIALIFISNLP- 585 (742)
Q Consensus 510 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 585 (742)
|+++.+. .|+ ...+..+...+.+.|++++|.++++++.+. .|+ ...+..++.+|.+.|++++|...++++.
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999874 444 456777888899999999999999998753 233 4567889999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCCc
Q 044169 586 IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAE---AGLQADAEEQRKLMKMKEISKEPG 660 (742)
Q Consensus 586 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~---~g~~~~A~~~~~~m~~~~~~~~~~ 660 (742)
..|+...+..+...+.+.|++++|...++++++..|++. .+..+...+.. .|+.+++..+++.|.+++++++|.
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 567777778888899999999999999999999999655 56666665554 569999999999999999988885
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-18 Score=179.26 Aligned_cols=297 Identities=14% Similarity=0.181 Sum_probs=175.9
Q ss_pred HHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCCh
Q 044169 193 YAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSK---TAVSNALLTMYIKCGMM 269 (742)
Q Consensus 193 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~ 269 (742)
+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 345556666666666665542 22334555555555666666666666665554321111 23456667777777777
Q ss_pred HHHHHHHhccCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 044169 270 EDAESVFEGLVQ---RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVI 346 (742)
Q Consensus 270 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 346 (742)
++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..++....
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------------------ 179 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI------------------------ 179 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH------------------------
Confidence 777777777754 34556777777777777777777777777664322211100
Q ss_pred HhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CC-CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHH
Q 044169 347 KRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GK-SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTY 424 (742)
Q Consensus 347 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 424 (742)
...+..+...+.+.|++++|...|+++ .. +.+...+..+...|.+.|++++|.++|+++...+......++
T Consensus 180 -------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 180 -------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred -------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH
Confidence 112233455556666666666666665 11 233456666777778888888888888877765322223455
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCchHHHHHHHHHHH---
Q 044169 425 SSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT--AADVVSWNSMIKAYSQ--- 499 (742)
Q Consensus 425 ~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~--- 499 (742)
..+..++...|+.++|...++.+.+.. |+...+..++..|.+.|++++|..+|+++. .|+...++.++..+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccC
Confidence 666666667777777777666666542 444444566666666666666666666554 3555566666655543
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH
Q 044169 500 NGRARKAIILFEKMVVEGIRPTNS 523 (742)
Q Consensus 500 ~g~~~~A~~~~~~m~~~g~~p~~~ 523 (742)
.|+.++++.++++|.+.++.|++.
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCC
Confidence 346666666666666655555553
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.6e-16 Score=172.40 Aligned_cols=353 Identities=10% Similarity=-0.001 Sum_probs=268.8
Q ss_pred HhCCChHHHHHHHhccCCC------CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhH
Q 044169 264 IKCGMMEDAESVFEGLVQR------NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHM 337 (742)
Q Consensus 264 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 337 (742)
.+..+++.-.-+|..-++. +....-.++..+.+.|++++|+.+++........+. ..+..+..+....|+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHH
Confidence 3455666666666555441 233455667788889999999999988887644333 334444556667899999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CC-CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHc
Q 044169 338 GYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GK-SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN 415 (742)
Q Consensus 338 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 415 (742)
|...++.+.+.. +.+...+..+...+...|+.++|...+++. .. +.+...|..+...+...|+.++|...++.+...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999888764 345667788888999999999999999887 22 445678888999999999999999999988765
Q ss_pred CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHH
Q 044169 416 DAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNS 492 (742)
Q Consensus 416 g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 492 (742)
...+ ...+..+ ..+...|++++|...++.+.+....++......+...+.+.|++++|...|++.. ..+...+..
T Consensus 174 ~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 VPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4322 2233233 3477889999999999988776433444555566788899999999999999876 345668888
Q ss_pred HHHHHHHcCCHHH----HHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHH
Q 044169 493 MIKAYSQNGRARK----AIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDL 567 (742)
Q Consensus 493 li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 567 (742)
+...|...|++++ |+..|++..+. .|+. ..+..+...+...|++++|...+++..+. -+.+...+..+..+
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~ 327 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 9999999999986 89999999874 5664 67888889999999999999999998763 23345567788899
Q ss_pred HhhcCCHHHHHHHHHhCC-CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 568 LGRAGKLEIALIFISNLP-IKPTAPIW-RPLFAACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
|.+.|++++|++.++++. ..|+...+ ..+..++...|+.++|...++++++.+|++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999998865 56665443 3456678899999999999999999998753
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-15 Score=171.33 Aligned_cols=392 Identities=10% Similarity=0.042 Sum_probs=177.8
Q ss_pred HHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChH
Q 044169 191 AGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMME 270 (742)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (742)
......|+.++|++++.+..... +.+...+..+..++...|++++|..+++..++.. +.+......+..++...|+.+
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 33444555555555555544311 2223334444444555555555555555544432 222333444444444455555
Q ss_pred HHHHHHhccCC--C-CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 044169 271 DAESVFEGLVQ--R-NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIK 347 (742)
Q Consensus 271 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 347 (742)
+|...+++..+ | +.. |..+...+...|+.++|+..++++.+
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~----------------------------------- 144 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP----------------------------------- 144 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH-----------------------------------
Confidence 55544444422 1 222 44444444444444444444444444
Q ss_pred hCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCCh------hhHHHHHHHHH-----hCCCc---HHHHHHHHHHh
Q 044169 348 RGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASS------VSWNAQIAGFF-----RNQKT---EEAIEAFSQMV 413 (742)
Q Consensus 348 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~ 413 (742)
.. +.+...+..+...+...|..+.|.+.++.....|+. .....++.... ..+++ ++|++.++.+.
T Consensus 145 ~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 145 RA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred hC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 32 112333334445555556666666666655422221 00111111111 11122 55666666665
Q ss_pred Hc-CCCCChH-HHH----HHHHHhcCCCCHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 044169 414 RN-DAACDEF-TYS----SILKACSLLPSLATCEQIHSRIVKSKFE-SNVHVGSSLIEAYNKCGSWEDAERVFSQLTAAD 486 (742)
Q Consensus 414 ~~-g~~p~~~-t~~----~ll~~~~~~g~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 486 (742)
+. ...|+.. .+. ..+.++...|+.++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++...+
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 43 1122211 111 0022333446666666666666554421 211 11223455666666666666666554211
Q ss_pred -------chHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHhccCcHHHHHHHH
Q 044169 487 -------VVSWNSMIKAYSQNGRARKAIILFEKMVVEG-----------IRPTN---STFLAVLSACSHSGLVQDGQKVF 545 (742)
Q Consensus 487 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~ 545 (742)
...+..+..++...|++++|..+++++.... -.|+. ..+..+...+...|++++|++++
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1233444455566666666666666665431 01121 12333444555555555555555
Q ss_pred HHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 546 ESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 546 ~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
+++.. ..+.+...+..++.++...|++++|++.+++.. ..|+ ...+..+...+...|++++|+.+++++++..|++
T Consensus 383 ~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 383 RELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 55543 223334445555555555555555555555433 3333 3344444444555555555555555555555554
Q ss_pred c
Q 044169 624 A 624 (742)
Q Consensus 624 ~ 624 (742)
+
T Consensus 461 ~ 461 (765)
T PRK10049 461 P 461 (765)
T ss_pred H
Confidence 4
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-15 Score=174.77 Aligned_cols=394 Identities=10% Similarity=0.051 Sum_probs=271.9
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHhccCC-C--CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044169 253 TAVSNALLTMYIKCGMMEDAESVFEGLVQ-R--NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASC 329 (742)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 329 (742)
.....-.+......|+.++|++++.+... . +...+..+...+...|++++|..+|++..+.. +.+......+...+
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l 93 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33334445555556666666666665543 1 22235666666666666666666666655531 22233444555555
Q ss_pred hccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CC-CCChhhHHHHHHHHHhCCCcHHHHH
Q 044169 330 ASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GK-SASSVSWNAQIAGFFRNQKTEEAIE 407 (742)
Q Consensus 330 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~ 407 (742)
...|+.++|...++.+++.. +.+.. +..+...+...|+.++|...+++. .. +.+...+..+...+...|..++|+.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 66666666666666666552 33444 777788889999999999999987 22 3455666778888889999999999
Q ss_pred HHHHHhHcCCCCCh------HHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHh-CCCCchh-HH-H---HHHHHHH
Q 044169 408 AFSQMVRNDAACDE------FTYSSILKACS-----LLPSL---ATCEQIHSRIVKS-KFESNVH-VG-S---SLIEAYN 467 (742)
Q Consensus 408 ~~~~m~~~g~~p~~------~t~~~ll~~~~-----~~g~~---~~a~~i~~~~~~~-~~~~~~~-~~-~---~li~~~~ 467 (742)
.++.... .|+. .....++.... ..+++ +.|...++.+.+. ...|+.. .+ . ..+.++.
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 9987654 2321 01112222221 22233 6778888888754 2223221 11 1 1123445
Q ss_pred hcCCHHHHHHHHHhcCCCC---ch-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcH
Q 044169 468 KCGSWEDAERVFSQLTAAD---VV-SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-----NSTFLAVLSACSHSGLV 538 (742)
Q Consensus 468 ~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~ 538 (742)
..|++++|...|+++...+ +. .-..+..+|...|++++|+..|+++.+. .|. ......+..++...|++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccH
Confidence 7799999999999988432 21 2222577899999999999999998864 332 23466667788999999
Q ss_pred HHHHHHHHHhHHhcC----------CCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc
Q 044169 539 QDGQKVFESMVKEYG----------ILPE---EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCH 603 (742)
Q Consensus 539 ~~a~~~~~~m~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~ 603 (742)
++|.++++.+..... -.|+ ...+..++.++...|++++|++.++++. ..| +...+..+...+...
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 999999999875311 1123 2345677889999999999999999865 334 678889999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 604 SDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 604 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
|++++|++.++++++++|+++..+..++..+...|++++|..+++.+.+..
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999987644
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-15 Score=168.73 Aligned_cols=249 Identities=11% Similarity=0.030 Sum_probs=189.3
Q ss_pred CCCHHHHHHHHHhcCC-----CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCC-hHHHHHHHHHhcCCCCHHHH
Q 044169 367 LGEIWEAKKQLKEMGK-----SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACD-EFTYSSILKACSLLPSLATC 440 (742)
Q Consensus 367 ~g~~~~A~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a 440 (742)
.+++++|.+.|+..-. +.....|+.+...+...|++++|+..|++.... .|+ ...|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 4667778877776620 223456777888888888999999888888765 344 55777777788888899999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 044169 441 EQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEG 517 (742)
Q Consensus 441 ~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 517 (742)
...++.+.+.. +.+..++..+..+|...|++++|...|++.. +.+...|..+...+.+.|++++|+..|++.++.
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 99888887764 4457788888889999999999999998876 334567778888889999999999999998874
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH--------HHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 044169 518 IRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEE--------AHYSCMVDLLGRAGKLEIALIFISNL-PIK 587 (742)
Q Consensus 518 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 587 (742)
.|+ ...+..+..++...|++++|++.|+...+. .|+. ..++.....+...|++++|.+++++. ...
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 454 567888888999999999999999988652 2221 11222223344579999999999874 345
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 588 PT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 588 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
|+ ...+..+...+.+.|++++|...+++++++.+..
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 54 5578888999999999999999999999987743
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-15 Score=168.40 Aligned_cols=352 Identities=10% Similarity=-0.008 Sum_probs=273.5
Q ss_pred HhCCCcchHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH
Q 044169 295 KQHGDYEKPLRLVCLMRED--GIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWE 372 (742)
Q Consensus 295 ~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 372 (742)
.+..+|+.-.-.|..-.++ .-.-+..-...++..+.+.|+.+.|..+++.++.....+. .....++......|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHH
Confidence 3445555544444333221 0112333455667788899999999999999988765544 444445566677999999
Q ss_pred HHHHHHhc-CC-CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 044169 373 AKKQLKEM-GK-SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKS 450 (742)
Q Consensus 373 A~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~ 450 (742)
|...|+++ .. +.+...|..+...+.+.|++++|...|++..... +.+...+..+...+...|+.++|...+..+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 99999998 22 4456778889999999999999999999998753 334667788888999999999999999988766
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHH
Q 044169 451 KFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAA----DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTF 525 (742)
Q Consensus 451 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 525 (742)
.. .+...+..+ ..+.+.|++++|...++.+.+. +...+..+..++...|++++|+..++++.+. .|+ ...+
T Consensus 174 ~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~ 249 (656)
T PRK15174 174 VP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALR 249 (656)
T ss_pred CC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHH
Confidence 42 233333333 3478899999999999987632 2334455677889999999999999999985 454 4677
Q ss_pred HHHHHHHhccCcHHH----HHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 044169 526 LAVLSACSHSGLVQD----GQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAA 599 (742)
Q Consensus 526 ~~ll~a~~~~g~~~~----a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 599 (742)
..+..++...|++++ |...|+++.+. .+.+...+..+..++.+.|++++|+..+++.. ..| +...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 788889999999986 89999998752 33456688999999999999999999998864 455 46677888888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 600 CRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 600 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+.+.|++++|...++++++.+|+++..+..++.++...|++++|...++...+..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999888777778999999999999999999887654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-14 Score=159.03 Aligned_cols=444 Identities=9% Similarity=0.030 Sum_probs=288.9
Q ss_pred HHHHhcCChhHHHHHHccCCCCCcc---cHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHH
Q 044169 160 NMYAKCGDIKSMVAVVKQMPYLDIA---SCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDE 236 (742)
Q Consensus 160 ~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 236 (742)
-...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.... -.........+...+...|++++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 3456778888888888777643322 1337777777778888888888877611 01122222223456677788888
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHh--CCCcchHHHHHHHHHHCC
Q 044169 237 GKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQ--HGDYEKPLRLVCLMREDG 314 (742)
Q Consensus 237 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g 314 (742)
|.++++.+.+.. +.+...+..++..|...++.++|++.++++...+......+..++.. .++..+|++.++++.+..
T Consensus 121 Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 121 ALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 888888887775 44466667778888888899999988888876544433334444444 455556888888888763
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHH
Q 044169 315 IDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIA 394 (742)
Q Consensus 315 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~ 394 (742)
+-+...+..+..+..+.|-...|.++...-. +.++-..... =+.+.|.+..+.....+... -.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~-----l~~~~~a~~vr~a~~~~~~~-----~~ 262 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQ-----LERDAAAEQVRMAVLPTRSE-----TE 262 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHH-----HHHHHHHHHHhhcccccccc-----hh
Confidence 2345555666667777776666665544311 1111000000 01111111111110000000 00
Q ss_pred HHHhCCCcHHHHHHHHHHhHc-CCCCCh-HH----HHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 044169 395 GFFRNQKTEEAIEAFSQMVRN-DAACDE-FT----YSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNK 468 (742)
Q Consensus 395 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~-~t----~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 468 (742)
+---.+.|+.-++.+... +-.|.. .- ..--+-++...|+..+++..++.+...+.+....+-.++.++|..
T Consensus 263 ---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 263 ---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred ---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 000124455555555442 112321 11 223345667788888888888888888776666788888899999
Q ss_pred cCCHHHHHHHHHhcCCC---------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCCH--H-HH
Q 044169 469 CGSWEDAERVFSQLTAA---------DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGI-----------RPTN--S-TF 525 (742)
Q Consensus 469 ~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~--~-t~ 525 (742)
.+++++|+.+|+++... +......|..+|...+++++|..+++++.+.-- .||. . .+
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 99999999999887521 222346788899999999999999999887311 2332 2 34
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc
Q 044169 526 LAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCH 603 (742)
Q Consensus 526 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~ 603 (742)
..++..+...|++.+|++.++.+.. .-+-|......+.+++...|.+.+|.+.++... ..| +..+......+....
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh
Confidence 5556778899999999999999975 456678888999999999999999999998754 455 456667777888899
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhH
Q 044169 604 SDLKMAEFISKQILELDPDDAAVY 627 (742)
Q Consensus 604 g~~~~a~~~~~~~~~~~p~~~~~~ 627 (742)
+++++|..+.+.+++..|+++.+-
T Consensus 498 ~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 498 QEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hhHHHHHHHHHHHHhhCCCchhHH
Confidence 999999999999999999887543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.4e-14 Score=136.91 Aligned_cols=435 Identities=11% Similarity=0.136 Sum_probs=260.7
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhh--ccccchHHH-HHHHHHHHHhccCCChhHHH
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYC--SREECLELG-RRYHALITKTAVCGDQFVTA 156 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~--~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~ 156 (742)
..+|....+.-+|+.|.+.|+. .+...-..+++.- -...++.-+ .+.|-.|.+.| +.+..+|
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~-------------vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW- 190 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVD-------------VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW- 190 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCC-------------CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-
Confidence 4677888888888888888877 5665555554432 222222211 23344444444 2233333
Q ss_pred HHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHH
Q 044169 157 SLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDE 236 (742)
Q Consensus 157 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 236 (742)
+.|++.+ ++-+...+...++..||+++++-...+.|.++|++-.....+.+..+||.+|.+-. +..
T Consensus 191 -------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~ 256 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSV 256 (625)
T ss_pred -------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhc
Confidence 3355444 33444445667899999999999999999999999998888999999999998754 334
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHH----hcc----CCCCcchHHHHHHHHHhCCCcch-HHHHH
Q 044169 237 GKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVF----EGL----VQRNVISWTAIINGFKQHGDYEK-PLRLV 307 (742)
Q Consensus 237 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~----~~~~~~~~~~li~~~~~~g~~~~-A~~~~ 307 (742)
.+.+..+|....+.||..|+|+++.+.++.|+++.|...+ .+| .+|...+|..+|..+++.++..+ +..++
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 4889999999999999999999999999999988776543 333 23566666666666666666543 33333
Q ss_pred HHHHHC----CCCC----CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHh
Q 044169 308 CLMRED----GIDP----NEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKE 379 (742)
Q Consensus 308 ~~m~~~----g~~p----~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 379 (742)
.+.... .++| |...|...+..|.+..+.+.|.+++.......- +..
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N--------------------------~~~ 390 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN--------------------------WKF 390 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc--------------------------hhh
Confidence 333321 1222 344555666666666666666666554332110 000
Q ss_pred cCCCCC---hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCch
Q 044169 380 MGKSAS---SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNV 456 (742)
Q Consensus 380 ~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~ 456 (742)
+ .++ ..-|..+....|+....+.-+..|+.|.-.-.-|+..+...++++....+.++-..+++..+...|.....
T Consensus 391 i--g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 391 I--GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred c--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 1 111 12345566677777778888888888887777788888888888888888888888888888777644333
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHc-CCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044169 457 HVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQN-GRA-RKAIILFEKMVVEGIRPTNSTFLAVLSACSH 534 (742)
Q Consensus 457 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 534 (742)
....-++..+++.. ..|+...-..+-....+. -++ +.....-.+|++..+.| ...+.++..+.+
T Consensus 469 ~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R 534 (625)
T KOG4422|consen 469 DLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLR 534 (625)
T ss_pred HHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHH
Confidence 33222222222221 012211111111111110 011 11222234455443433 344555555677
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCcHHHHH---HHHHHHhhcCCHHHHHHHHHhCC
Q 044169 535 SGLVQDGQKVFESMVKEYGILPEEAHYS---CMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
.|..++|.++|..+.+...--|.....+ -+++.-.+....-.|+..++-+.
T Consensus 535 ~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 535 AGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred cchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7888888888877755433334444444 44455566677777777776553
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-13 Score=154.87 Aligned_cols=433 Identities=11% Similarity=0.000 Sum_probs=262.0
Q ss_pred HHhCCChHHHHHHHHHchhCCCCCCh--hhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChH
Q 044169 193 YAKNALFDQAFSFFLKLDGIDVQPNH--YTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMME 270 (742)
Q Consensus 193 ~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (742)
..+.|++..|++.|++..+. .|+. ..+ .++..+...|+.++|...+++... ....+.....++...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHH
Confidence 34666667777777666654 3332 122 555555566666666666666551 01111222223344566666666
Q ss_pred HHHHHHhccCCC---CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 044169 271 DAESVFEGLVQR---NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIK 347 (742)
Q Consensus 271 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 347 (742)
+|.++|+++.+. |...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|...++.+.+
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 666666666442 3344555556666666666666666666543 34444443332222223333335555555555
Q ss_pred hCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHH
Q 044169 348 RGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSI 427 (742)
Q Consensus 348 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 427 (742)
.. +.+...+..++....+.|-...|.++..+- |+..+-...... +.+.|.+. ++.+..++.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~---p~~f~~~~~~~l-----~~~~~a~~----vr~a~~~~~------ 258 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN---PNLVSAEHYRQL-----ERDAAAEQ----VRMAVLPTR------ 258 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC---ccccCHHHHHHH-----HHHHHHHH----Hhhcccccc------
Confidence 43 333444444555555555555555444442 221111100000 00111111 111111100
Q ss_pred HHHhcCCCC---HHHHHHHHHHHHHh-CCCCc-hhH----HHHHHHHHHhcCCHHHHHHHHHhcCCC----CchHHHHHH
Q 044169 428 LKACSLLPS---LATCEQIHSRIVKS-KFESN-VHV----GSSLIEAYNKCGSWEDAERVFSQLTAA----DVVSWNSMI 494 (742)
Q Consensus 428 l~~~~~~g~---~~~a~~i~~~~~~~-~~~~~-~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li 494 (742)
....+ .+.|..-++.+... +-.|. ... ..--+-++.+.|+..++.+.|+.+..+ ...+-..+.
T Consensus 259 ----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 259 ----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred ----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 01112 23444444444432 11232 111 122345677889999999999999833 233566788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC----------CCcH-
Q 044169 495 KAYSQNGRARKAIILFEKMVVEG-----IRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGI----------LPEE- 558 (742)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~----------~p~~- 558 (742)
.+|...+++++|+.+|+++.... ..++......|.-++...+++++|..+++.+.+.... .|+.
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 99999999999999999997642 1223334577889999999999999999999762110 1222
Q ss_pred --HHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 559 --AHYSCMVDLLGRAGKLEIALIFISNLP-I-KPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 559 --~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
..+..++..+...|++.+|++.++++. . +.|...+..+...+...|...+|++.++.+..++|++..+...++..+
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 234556788899999999999999875 3 447888999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 044169 635 AEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 635 ~~~g~~~~A~~~~~~m~~~~ 654 (742)
...|+|.+|..+.+...+.-
T Consensus 495 l~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 495 MALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HhhhhHHHHHHHHHHHHhhC
Confidence 99999999999887776543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-13 Score=129.57 Aligned_cols=418 Identities=14% Similarity=0.139 Sum_probs=287.4
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHc--cCCChHH-HHHHHHHHHHhCCCCChhHHHHH
Q 044169 183 IASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICG--SLSAIDE-GKQLHAQTMKLQYLSKTAVSNAL 259 (742)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~--~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l 259 (742)
+++=|.|+.. ..+|....+.-+|+.|...|+..+...-..+++..+ ...++-- -.+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 4456666654 457888999999999999998887776666654332 2223221 223333344433 2222232
Q ss_pred HHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHH
Q 044169 260 LTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGY 339 (742)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 339 (742)
+.|++.+ ++-+...+...+|..||.++++-...+.|.++|++-.....+.+..+|+.+|.+.+-. .++
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence 3455444 4555555677899999999999999999999999999988899999999999876543 337
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHH----HHh---cCCCCChhhHHHHHHHHHhCCCcHH-HHHHHHH
Q 044169 340 MFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQ----LKE---MGKSASSVSWNAQIAGFFRNQKTEE-AIEAFSQ 411 (742)
Q Consensus 340 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~---~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~ 411 (742)
.+..+|....+.||..++|+++....+.|+++.|..- +.+ +++.|...+|..+|..+++.++..+ |..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 8899999999999999999999999999988776643 333 3889999999999999999988865 4445555
Q ss_pred HhH----cCCCC----ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----CCCCc---hhHHHHHHHHHHhcCCHHHHH
Q 044169 412 MVR----NDAAC----DEFTYSSILKACSLLPSLATCEQIHSRIVKS----KFESN---VHVGSSLIEAYNKCGSWEDAE 476 (742)
Q Consensus 412 m~~----~g~~p----~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~~~---~~~~~~li~~~~~~g~~~~A~ 476 (742)
++. ..++| |..-|...+..|.+..+.+.|.+++...... -+.|+ ...|..+..+.|.....+.-.
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 22333 4566888899999999999999998876532 12333 345667888888889999999
Q ss_pred HHHHhcC----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-c--------------
Q 044169 477 RVFSQLT----AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSG-L-------------- 537 (742)
Q Consensus 477 ~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-~-------------- 537 (742)
..|+.|. -|+..+-..++.+..-.|+++-.-+++..++..|..-+...-.-++..+++.. .
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~a 498 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFA 498 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 9999887 35666777788888888999988899988888775444444333333333322 0
Q ss_pred -----HHHHH-HHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCHHHHH---HHHHHHHHcC
Q 044169 538 -----VQDGQ-KVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP----IKPTAPIWR---PLFAACRCHS 604 (742)
Q Consensus 538 -----~~~a~-~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~---~l~~~~~~~g 604 (742)
+.++. ..-.++ ..........++.+-.+.|.|+.++|.+++.-.. .-|-.+..+ -++.+..+.+
T Consensus 499 k~aad~~e~~e~~~~R~---r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~ 575 (625)
T KOG4422|consen 499 KCAADIKEAYESQPIRQ---RAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSN 575 (625)
T ss_pred HHHHHHHHHHHhhHHHH---HhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcC
Confidence 01110 011111 1333445567788888888888888888876542 123333334 4455556666
Q ss_pred CHHHHHHHHHHHHhcC
Q 044169 605 DLKMAEFISKQILELD 620 (742)
Q Consensus 605 ~~~~a~~~~~~~~~~~ 620 (742)
+...|..+++-+.+.+
T Consensus 576 spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 576 SPSQAIEVLQLASAFN 591 (625)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 7777777777765544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-11 Score=132.02 Aligned_cols=528 Identities=12% Similarity=0.105 Sum_probs=368.9
Q ss_pred HHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHcc---CCCCCcccHHHHHHHHHhCCChH
Q 044169 124 LSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQ---MPYLDIASCNCLLAGYAKNALFD 200 (742)
Q Consensus 124 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~ 200 (742)
..-....|++++|..++..+++.. +.+...|..|..+|-..|+.+.+...+-- ....|..-|-.+-....+.|+++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 333444599999999999999986 66788999999999999999999876643 34457788999999999999999
Q ss_pred HHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHH----HHHHHHhCCChHHHHHHH
Q 044169 201 QAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNA----LLTMYIKCGMMEDAESVF 276 (742)
Q Consensus 201 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~ 276 (742)
+|.-.|.+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-... .+..|...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999998864 44544555556778889999999999999988754333333333 345566677778899888
Q ss_pred hccCC--C---CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHH----------------------H----HHH
Q 044169 277 EGLVQ--R---NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYT----------------------F----TVA 325 (742)
Q Consensus 277 ~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------------------~----~~l 325 (742)
+.... . +...++.++..|.+...++.|......+......+|..- | .-+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 87755 2 455689999999999999999999888876222222211 1 123
Q ss_pred HHHHhccCChhHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhCC
Q 044169 326 LASCASLRNSHMGYMFHAQVIKRGM--ALGDFVGTAIVDMYSGLGEIWEAKKQLKEMG---KSASSVSWNAQIAGFFRNQ 400 (742)
Q Consensus 326 l~~~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g 400 (742)
.-++......+....+......... .-+...+.-+.++|...|++.+|.++|..+- ...+...|-.+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 3344556666666677777777663 4457788899999999999999999999982 2345678999999999999
Q ss_pred CcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCH
Q 044169 401 KTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIV--------KSKFESNVHVGSSLIEAYNKCGSW 472 (742)
Q Consensus 401 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~ 472 (742)
..++|.+.|+..+... +-+...-.+|...+...|+.++|.+.+..+. ..+..|.........+.|...|+.
T Consensus 464 e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 9999999999988753 2234455667777889999999999988743 334556666666667777777776
Q ss_pred HHHHHHHHhcCC------------------------------------------------------C-----------Cc
Q 044169 473 EDAERVFSQLTA------------------------------------------------------A-----------DV 487 (742)
Q Consensus 473 ~~A~~~~~~~~~------------------------------------------------------~-----------~~ 487 (742)
++=..+-..|.. + ..
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 653332221110 0 01
Q ss_pred hHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHH--H-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH
Q 044169 488 VSW----NSMIKAYSQNGRARKAIILFEKMVVEGI--RPTNS--T-FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEE 558 (742)
Q Consensus 488 ~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~--t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 558 (742)
.-| .-++.++++.+++++|+.+...+.+... .++.. . =...+.++...+++..|...++.|...++...++
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~ 702 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDV 702 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhh
Confidence 112 3356778899999999999988876532 22221 2 2344566778899999999999887754443222
Q ss_pred ---HHHHHHHHHHh-----------------------------------hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 044169 559 ---AHYSCMVDLLG-----------------------------------RAGKLEIALIFISNL-PIKPTAPIWRPLFAA 599 (742)
Q Consensus 559 ---~~~~~l~~~~~-----------------------------------~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 599 (742)
..|++..+.+. .++.+..|+..+-+. ...||.+..+.+++.
T Consensus 703 ~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgl 782 (895)
T KOG2076|consen 703 YQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGL 782 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 23442222222 234456666554432 245665555554443
Q ss_pred -HH----------HcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 600 -CR----------CHSDLKMAEFISKQILELDPD--DAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 600 -~~----------~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+. +|-..-++..++.+..++... ...++..++.+|-..|-..-|..++++...-.
T Consensus 783 afih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 783 AFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 11 122244566677667666533 56788999999999999999999999987654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-11 Score=124.14 Aligned_cols=513 Identities=10% Similarity=0.068 Sum_probs=396.4
Q ss_pred chHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHH
Q 044169 132 CLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAFSFFLK 208 (742)
Q Consensus 132 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (742)
+...-.+++...++. ++.++..|.+.+ .....++|+.++.+..+ .+...| -+|++..-++.|..+++.
T Consensus 361 ~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvLNk 431 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVLNK 431 (913)
T ss_pred HHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHHH
Confidence 333345566666655 455666665544 45667778888876543 233333 455666678888888888
Q ss_pred chhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHH----HHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC---
Q 044169 209 LDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQT----MKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ--- 281 (742)
Q Consensus 209 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 281 (742)
.++. ++-+...|.+....=-..|+.+....+.++- ...|+..+..-|-.=...+-+.|..-.+..+...+..
T Consensus 432 aRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigv 510 (913)
T KOG0495|consen 432 AREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGV 510 (913)
T ss_pred HHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcc
Confidence 8765 6778888888777777788888888887654 3457777777777777777777877777777665532
Q ss_pred ---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHH
Q 044169 282 ---RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGT 358 (742)
Q Consensus 282 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 358 (742)
.-..+|+.-...|.+.+.++-|..+|...++. ++-+...|......--..|..+....+++..+..- +.....|-
T Consensus 511 Eeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwl 588 (913)
T KOG0495|consen 511 EEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWL 588 (913)
T ss_pred ccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHH
Confidence 23457888888999999999899998888764 33445556666555566688888888888888764 34556666
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc--CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCC
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEM--GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPS 436 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 436 (742)
.....+-..|++..|..++... -.+.+...|-+.+.....+.++++|..+|.+.... .|+...|..-+..---.++
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhh
Confidence 6777788889999999988876 21446778999999999999999999999988764 5777777766666667889
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-CchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044169 437 LATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT--AA-DVVSWNSMIKAYSQNGRARKAIILFEKM 513 (742)
Q Consensus 437 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 513 (742)
.++|.++++...+. ++.-...|-.+...+-..++++.|.+.|..-. .| .+-.|-.|...--+.|+.-+|..++++.
T Consensus 667 ~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 667 VEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 99999999988875 34446788889999999999999999998765 34 4457888888888899999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 044169 514 VVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIW 593 (742)
Q Consensus 514 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 593 (742)
+-.+ +-+...|...++.-.+.|+.+.|..+..+..+ ..+.+...|..-|.+..+.++-..+.+.+++... |+-+.
T Consensus 746 rlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVl 820 (913)
T KOG0495|consen 746 RLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVL 820 (913)
T ss_pred HhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhH
Confidence 8762 44557899999999999999999999999887 5667778899999999999998888998888764 44455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccEEEE
Q 044169 594 RPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEV 666 (742)
Q Consensus 594 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~ 666 (742)
......+.....++.|.+.|+++++.+|++..++..+-..+...|.-++-.+++++..... |.-|..|+.+
T Consensus 821 laia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 5666677788889999999999999999999999999999999999999999998877644 4567777654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.4e-11 Score=121.23 Aligned_cols=543 Identities=10% Similarity=0.047 Sum_probs=385.0
Q ss_pred CCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhcc---CCChhHHHHH
Q 044169 82 NGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAV---CGDQFVTASL 158 (742)
Q Consensus 82 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~~~~~~~~l 158 (742)
.++...|.-++....+.++. ++..|.+-.+.--..|.+..|+.+ +..|. +.+..+|---
T Consensus 264 l~DikKaR~llKSvretnP~--------------hp~gWIAsArLEEvagKl~~Ar~~----I~~GCe~cprSeDvWLea 325 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPK--------------HPPGWIASARLEEVAGKLSVARNL----IMKGCEECPRSEDVWLEA 325 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CCchHHHHHHHHHHhhHHHHHHHH----HHHHHhhCCchHHHHHHH
Confidence 34667888888888887776 344444444433344555444443 33332 2233333221
Q ss_pred HHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHH
Q 044169 159 VNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGK 238 (742)
Q Consensus 159 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 238 (742)
++....+.|..+..........+-..-+.+---..+...=.+++++.++. ++-+...|.. .....+.+.|+
T Consensus 326 ----iRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKa----AVelE~~~dar 396 (913)
T KOG0495|consen 326 ----IRLHPPDVAKTVVANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKA----AVELEEPEDAR 396 (913)
T ss_pred ----HhcCChHHHHHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHH----HHhccChHHHH
Confidence 23344555555554443322222222222222223334444566666554 3334444443 34456677788
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhCCCcchHHHHHHH----HH
Q 044169 239 QLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ---RNVISWTAIINGFKQHGDYEKPLRLVCL----MR 311 (742)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~ 311 (742)
-++...++.- +.+... .-+|++...++.|..++++..+ .+...|-+-...--.+|+.+...+++.+ +.
T Consensus 397 ilL~rAvecc-p~s~dL----wlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~ 471 (913)
T KOG0495|consen 397 ILLERAVECC-PQSMDL----WLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQ 471 (913)
T ss_pred HHHHHHHHhc-cchHHH----HHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 8888887763 333333 3455666778888888877654 4677787777777778888887777654 45
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHhc--CCCCChh
Q 044169 312 EDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALG--DFVGTAIVDMYSGLGEIWEAKKQLKEM--GKSASSV 387 (742)
Q Consensus 312 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~ 387 (742)
..|+..+..-|..=...|-..|..-.+..|...++..|+... -.+|..-.+.+.+.+.++-|..+|... -.+.+..
T Consensus 472 ~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~s 551 (913)
T KOG0495|consen 472 ANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKS 551 (913)
T ss_pred hcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhH
Confidence 678888888888888889888999999999999988887653 467888888899999999999988776 2245567
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 044169 388 SWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYN 467 (742)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 467 (742)
.|...+..--..|..++-..+|++.... ++-....|.......-..|+...|+.++..+.+.+ +.+..++-+-+....
T Consensus 552 lWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~ 629 (913)
T KOG0495|consen 552 LWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEF 629 (913)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhh
Confidence 7888777777788889999999998876 34455666666677777899999999999988875 447788888899999
Q ss_pred hcCCHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHH
Q 044169 468 KCGSWEDAERVFSQLT--AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 468 ~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 544 (742)
...+++.|..+|.+.. .+....|.--+...--.++.++|++++++.++. -|+. ..|..+...+-+.++.+.|.+.
T Consensus 630 en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred ccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999998876 566677777676667788999999999998884 6776 4577777788888999999888
Q ss_pred HHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 545 FESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 545 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
|..=.+ ..+-....|-.|.+.=.+.|.+-.|..++++.. .+.+...|...+..-.+.|+.+.|..+..++++-.|.
T Consensus 708 Y~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 708 YLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred HHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 876543 344456678888888889999999999998764 3447888999999999999999999988888775443
Q ss_pred ------------------------------CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccEE
Q 044169 623 ------------------------------DAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWI 664 (742)
Q Consensus 623 ------------------------------~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~ 664 (742)
|+.+....+.++....++++|.+.|.+..+.+ ++-|..|.
T Consensus 786 sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa 855 (913)
T KOG0495|consen 786 SGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWA 855 (913)
T ss_pred cchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHH
Confidence 55567788889999999999999999888765 35566664
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-13 Score=131.41 Aligned_cols=498 Identities=13% Similarity=0.062 Sum_probs=295.1
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHh----ccCCChhHHHHHHHHHHhcCChhHHHHHHccCCC----CCcc-cHHHHH
Q 044169 120 VIEVLSYCSREECLELGRRYHALITKT----AVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPY----LDIA-SCNCLL 190 (742)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~-~~~~li 190 (742)
|-..+.-.-..|+-+.+.--|..-... .+..+-.+...|.+-|.......+|+..++-+.+ +|.- .--.+.
T Consensus 165 ~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnig 244 (840)
T KOG2003|consen 165 FKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIG 244 (840)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeec
Confidence 444444444445444444333321111 1233334445555566666666666666655432 1111 111223
Q ss_pred HHHHhCCChHHHHHHHHHchhCCCCCChhh----HHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 044169 191 AGYAKNALFDQAFSFFLKLDGIDVQPNHYT----YSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKC 266 (742)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (742)
..+.+...+.+|+++|+-....-...+..+ .+.+--.+.+.|.++.|..-|+..++. .|+..+.-.|+-++.--
T Consensus 245 ni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i 322 (840)
T KOG2003|consen 245 NIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAI 322 (840)
T ss_pred ceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheec
Confidence 445666667777777765554311122222 222333455677777777777776655 46666555556566666
Q ss_pred CChHHHHHHHhccCC----------------CCcchHHHHH-----HHHHhCC--CcchHHHHHHHHHHCCCCCCHHHHH
Q 044169 267 GMMEDAESVFEGLVQ----------------RNVISWTAII-----NGFKQHG--DYEKPLRLVCLMREDGIDPNEYTFT 323 (742)
Q Consensus 267 g~~~~A~~~~~~~~~----------------~~~~~~~~li-----~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~ 323 (742)
|+-++..+.|.+|.. |+....|.-| .-+-+.+ +.++++-.--++..--+.||-.
T Consensus 323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa--- 399 (840)
T KOG2003|consen 323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA--- 399 (840)
T ss_pred CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh---
Confidence 777777777766632 1222222222 1111111 1112222212222111222211
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCC-CCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhH----HHH-HHHHH
Q 044169 324 VALASCASLRNSHMGYMFHAQVIKRGM-ALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSW----NAQ-IAGFF 397 (742)
Q Consensus 324 ~ll~~~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~l-i~~~~ 397 (742)
.--..| ++.+..+-. +.-...-..-...|.+.|+++.|.+++.-.. ..|..+- |.+ +--|.
T Consensus 400 ~g~dwc------------le~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~-~kdnk~~saaa~nl~~l~fl 466 (840)
T KOG2003|consen 400 AGCDWC------------LESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE-KKDNKTASAAANNLCALRFL 466 (840)
T ss_pred cccHHH------------HHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH-hccchhhHHHhhhhHHHHHH
Confidence 000011 111111000 0000111112345778899999998887775 3333222 222 22233
Q ss_pred hC-CCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 044169 398 RN-QKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAE 476 (742)
Q Consensus 398 ~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 476 (742)
+. .++..|..+-+...... +-+....+.-....-..|++++|.+.+++.....-.-....|| +.-.+-+.|++++|.
T Consensus 467 qggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeal 544 (840)
T KOG2003|consen 467 QGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEAL 544 (840)
T ss_pred hcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHH
Confidence 33 34556655555443321 2222222222223345789999999999988754222223333 344577889999999
Q ss_pred HHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 044169 477 RVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYG 553 (742)
Q Consensus 477 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 553 (742)
+.|-++. ..++...-.+...|-...+..+|++++-+.... ++.|+.....|...|-+.|+-.+|.+.+-+--+ -
T Consensus 545 d~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--y 621 (840)
T KOG2003|consen 545 DCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--Y 621 (840)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--c
Confidence 9998775 567777778888999999999999999888764 455667889999999999999999988765432 4
Q ss_pred CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 044169 554 ILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPTAPIWRPLFAAC-RCHSDLKMAEFISKQILELDPDDAAVYVTLS 631 (742)
Q Consensus 554 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 631 (742)
++-+.++..-|..-|....-+++|+.+|++.. .+|+..-|..++..| ++.|++++|..+|+......|+|...+-.|.
T Consensus 622 fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflv 701 (840)
T KOG2003|consen 622 FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLV 701 (840)
T ss_pred cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 56678888889999999999999999999865 799999999999886 5789999999999999999999999999999
Q ss_pred HHHHhcCCH
Q 044169 632 NMYAEAGLQ 640 (742)
Q Consensus 632 ~~y~~~g~~ 640 (742)
+++...|..
T Consensus 702 ri~~dlgl~ 710 (840)
T KOG2003|consen 702 RIAGDLGLK 710 (840)
T ss_pred HHhccccch
Confidence 999888863
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.5e-11 Score=125.67 Aligned_cols=484 Identities=13% Similarity=0.094 Sum_probs=327.0
Q ss_pred HHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHH
Q 044169 161 MYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEG 237 (742)
Q Consensus 161 ~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 237 (742)
.....|+.++|.+++.++.. .+...|-+|...|-+.|+.++++..+-..-... +-|..-|..+.....+.|.+++|
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 33444999999999999864 466789999999999999999998875554332 44678899999999999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCc-c-------hHHHHHHHHHhCCCcchHHHHHHH
Q 044169 238 KQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNV-I-------SWTAIINGFKQHGDYEKPLRLVCL 309 (742)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~-------~~~~li~~~~~~g~~~~A~~~~~~ 309 (742)
.-.|.++++.. +++....-.-+..|-+.|+...|.+-|.++.+.++ + .--.++..+...++.+.|++.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999886 56666666678889999999999999998866333 1 223346677788888999999888
Q ss_pred HHHC-CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhC---------------------------CCCchHH-HHHH
Q 044169 310 MRED-GIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRG---------------------------MALGDFV-GTAI 360 (742)
Q Consensus 310 m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g---------------------------~~~~~~~-~~~l 360 (742)
.... +-..+...++++...+.+...++.+........... +.++..+ ...+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 7663 223445566677777777777777776665555422 2223333 1112
Q ss_pred HHHHHhCCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCH
Q 044169 361 VDMYSGLGEIWEAKKQLKEMG---KSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSL 437 (742)
Q Consensus 361 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 437 (742)
--...+.+...+++.-|.... ..-++..|.-+..+|.+.|++.+|+.+|..+.....--+...|-.+...+...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 122233445555554443331 13345667888999999999999999999998876566678899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCch------------HHHHHHHHHHHcCCHHH
Q 044169 438 ATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVV------------SWNSMIKAYSQNGRARK 505 (742)
Q Consensus 438 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~g~~~~ 505 (742)
+.|.+.++.+.... +.+..+-..|...|-+.|+.++|.++++.+..||.. .--.....+.+.|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999998864 445667778889999999999999999998766521 11223456677888777
Q ss_pred HHHHHHHHHHcC-----CCC-----------------CHHHHHHHHHHHhccCcHHHHHHHHHHh-----HHhcCCCCcH
Q 044169 506 AIILFEKMVVEG-----IRP-----------------TNSTFLAVLSACSHSGLVQDGQKVFESM-----VKEYGILPEE 558 (742)
Q Consensus 506 A~~~~~~m~~~g-----~~p-----------------~~~t~~~ll~a~~~~g~~~~a~~~~~~m-----~~~~~~~p~~ 558 (742)
=+.+...|+..+ +-| ...+...+..+-.+.++......-...- ....++.-+.
T Consensus 545 fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsidd 624 (895)
T KOG2076|consen 545 FINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDD 624 (895)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHH
Confidence 555555554321 111 1122223333333333322211111110 0111322222
Q ss_pred --HHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC
Q 044169 559 --AHYSCMVDLLGRAGKLEIALIFISNLP-----IKPTA---PIWRPLFAACRCHSDLKMAEFISKQILEL-----DPDD 623 (742)
Q Consensus 559 --~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~ 623 (742)
..+.-++..+++.|++++|+.+...+. ..+.. ..-...+.++...+++..|....+-++.. +|--
T Consensus 625 wfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q 704 (895)
T KOG2076|consen 625 WFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ 704 (895)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence 346678889999999999999987764 22222 12234455677899999999999998886 6655
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHH
Q 044169 624 AAVYVTLSNMYAEAGLQADAEEQR 647 (742)
Q Consensus 624 ~~~~~~l~~~y~~~g~~~~A~~~~ 647 (742)
...|+...+...+.|+-.-=.+.+
T Consensus 705 ~~l~n~~~s~~~~~~q~v~~~R~~ 728 (895)
T KOG2076|consen 705 LNLWNLDFSYFSKYGQRVCYLRLI 728 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555543333333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-10 Score=112.48 Aligned_cols=537 Identities=13% Similarity=0.110 Sum_probs=377.4
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHH
Q 044169 150 GDQFVTASLVNMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLA 226 (742)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 226 (742)
.+...|-...+-=-..++++.|+.+|++... ++...|-.-+..=.++.....|..++++....=...|.. |--.+-
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~y 149 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHH
Confidence 3444455544444556788899999998753 567778888888889999999999999987643233333 223333
Q ss_pred HHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcc--CCCCcchHHHHHHHHHhCCCcchHH
Q 044169 227 ICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGL--VQRNVISWTAIINGFKQHGDYEKPL 304 (742)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~ 304 (742)
.=-..|++..|+++|+.-.+. .|+...|.+.|+.=.+-..++.|..++++. ..|++.+|-.....-.++|+...|.
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 334568999999999988765 799999999999999999999999999986 5689999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHh----ccCChhHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHH--
Q 044169 305 RLVCLMREDGIDPNEYTFTVALASCA----SLRNSHMGYMFHAQVIKRGMAL-GDFVGTAIVDMYSGLGEIWEAKKQL-- 377 (742)
Q Consensus 305 ~~~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~-- 377 (742)
.+|+...+. -.|..--..++.+++ +...++.|..++...+..-... ....|..+...--+.|+.....+..
T Consensus 228 ~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 228 SVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 999988664 223333333344443 4567888888888888763222 2456666666666667654433322
Q ss_pred -Hhc-------CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCCh-------HHHHHHHHH---hcCCCCHHH
Q 044169 378 -KEM-------GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDE-------FTYSSILKA---CSLLPSLAT 439 (742)
Q Consensus 378 -~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~---~~~~g~~~~ 439 (742)
+++ ..+-|-.+|--.+..--..|+.+...++|++.... ++|-. ..|.-+=-+ -....+.+.
T Consensus 306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 222 21456678888888888889999999999998876 45532 122222112 235678999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHH----HhcCCHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044169 440 CEQIHSRIVKSKFESNVHVGSSLIEAY----NKCGSWEDAERVFSQLT--AADVVSWNSMIKAYSQNGRARKAIILFEKM 513 (742)
Q Consensus 440 a~~i~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 513 (742)
+.++++...+. ++....++.-+=-+| .++.++..|.+++.... .|...+|...|..-.+.++++.+..+|++.
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999883 455566666655555 47889999999999876 677788888898889999999999999999
Q ss_pred HHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHH
Q 044169 514 VVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPTAP 591 (742)
Q Consensus 514 ~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~ 591 (742)
++- .|. ..+|......-...|+.+.|..+|.-++....+......|.+.|+.=...|.++.|..+++++. ..+...
T Consensus 464 le~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 464 LEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred Hhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 984 554 4788888888888999999999999988754444455678899999999999999999999875 455667
Q ss_pred HHHHHHHHHH-----HcC-----------CHHHHHHHHHHHHhc----CCC--CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 044169 592 IWRPLFAACR-----CHS-----------DLKMAEFISKQILEL----DPD--DAAVYVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 592 ~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~--~~~~~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
+|.++...-. +.+ +...|..+|+++... .|. -...+....++-...|.-.+...+-++
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~ 621 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSK 621 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHh
Confidence 8888776543 344 577889999988763 332 122344455555667776666666666
Q ss_pred HHh-----CCCCCCCccc-EEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 044169 650 MKM-----KEISKEPGCS-WIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIE 698 (742)
Q Consensus 650 m~~-----~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 698 (742)
|.+ +.+..+.|.+ |-+.. -.++-.+.+.+...++++......+++.
T Consensus 622 mPk~vKKrr~~~~edG~~~~EEy~---DYiFPed~~~~~~~K~LeaA~kWK~q~~ 673 (677)
T KOG1915|consen 622 MPKKVKKRRKIQREDGDTEYEEYF---DYIFPEDASATKNLKILEAAKKWKKQKA 673 (677)
T ss_pred ccHHHHhhhhhhcccCchhHHHHH---HhcCccccccCcchHHHHHHHHHHHHHH
Confidence 642 1233333422 32221 1223333355555666665555555543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-12 Score=132.81 Aligned_cols=523 Identities=15% Similarity=0.086 Sum_probs=310.4
Q ss_pred HHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChh
Q 044169 90 SFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIK 169 (742)
Q Consensus 90 ~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 169 (742)
.++-.+...|+. |+..||..++..|+..|+.+.|. ++..|.-..++....+++.++......|+.+
T Consensus 11 nfla~~e~~gi~-------------PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~E 76 (1088)
T KOG4318|consen 11 NFLALHEISGIL-------------PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAE 76 (1088)
T ss_pred hHHHHHHHhcCC-------------CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccccccc
Confidence 456778888999 99999999999999999999998 9999998888888999999999999999888
Q ss_pred HHHHHHccCCCCCcccHHHHHHHHHhCCChHH---HHHHHHHch----hCCCCCChhhHHHHHHHHccCC-C------hH
Q 044169 170 SMVAVVKQMPYLDIASCNCLLAGYAKNALFDQ---AFSFFLKLD----GIDVQPNHYTYSTMLAICGSLS-A------ID 235 (742)
Q Consensus 170 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~----~~~~~p~~~t~~~ll~~~~~~~-~------~~ 235 (742)
.+. +|...+|+.|..+|...||... ..+.+.... ..|+..-..-+-..+.+|...- + ..
T Consensus 77 npk-------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illl 149 (1088)
T KOG4318|consen 77 NPK-------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLL 149 (1088)
T ss_pred CCC-------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHH
Confidence 776 6788899999999999999654 222122111 1232222222222222222110 0 00
Q ss_pred HHHHHHHHHHHhCC-CCChhHHHH---HHHHHHh-CCChHHHHHHHhccCC-CCcchHHHHHHHHHhCCCcchHHHHHHH
Q 044169 236 EGKQLHAQTMKLQY-LSKTAVSNA---LLTMYIK-CGMMEDAESVFEGLVQ-RNVISWTAIINGFKQHGDYEKPLRLVCL 309 (742)
Q Consensus 236 ~a~~~~~~~~~~~~-~~~~~~~~~---li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 309 (742)
--+.+++...+.+. .|...-++. +++-... ...+++-........+ ++..+|..++..-..+|+.+.|..++.+
T Consensus 150 v~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 150 VLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 11222333333321 111111111 1111111 1233343333333433 7888999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhH
Q 044169 310 MREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSW 389 (742)
Q Consensus 310 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 389 (742)
|++.|++.+..-|-.++-+ .++......+...|...|+.|+..|+.-.+-.....|....+.+. .+....+
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~------sq~~hg~ 300 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG------SQLAHGF 300 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc------cchhhhh
Confidence 9999999998888877765 778888888899999999999999988777666665553332222 2222223
Q ss_pred HHHHHHHHhCCCcHHHHH------------HHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC--CC-
Q 044169 390 NAQIAGFFRNQKTEEAIE------------AFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKF--ES- 454 (742)
Q Consensus 390 ~~li~~~~~~g~~~~A~~------------~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~--~~- 454 (742)
++-..+-+-.| ..|.+ .+++..-.|+.-....|..... ...+|.-+...++...+..-.. .+
T Consensus 301 tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~ 377 (1088)
T KOG4318|consen 301 TAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQ 377 (1088)
T ss_pred hHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcc
Confidence 33222222223 22222 2222222343333333333222 2235666666666665543211 11
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCch-HHHHHHHHHHH---cCCHHHHHHHHHH------------HHH---
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVV-SWNSMIKAYSQ---NGRARKAIILFEK------------MVV--- 515 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~------------m~~--- 515 (742)
++..+..++. +.|.+...+... .++ .-.+... ..+..+..++... +..
T Consensus 378 ~V~a~~~~lr------------qyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~El 444 (1088)
T KOG4318|consen 378 NVDAFGALLR------------QYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTEL 444 (1088)
T ss_pred hHHHHHHHHH------------HHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHH
Confidence 2233333333 333333322221 111 1111111 1111111111111 100
Q ss_pred -cCCCC-------CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--
Q 044169 516 -EGIRP-------TNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-- 585 (742)
Q Consensus 516 -~g~~p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 585 (742)
.-..| -...-+.++..|...-+..++...-+.. ++.-+ + ..|..|++.+....+.++|..+.++..
T Consensus 445 er~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky-e~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~ 520 (1088)
T KOG4318|consen 445 ERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY-EDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTR 520 (1088)
T ss_pred hcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhccc
Confidence 00111 1112344455555555555655444333 22122 2 578999999999999999999998875
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 044169 586 ---IKPTAPIWRPLFAACRCHSDLKMAEFISKQILEL---DPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEP 659 (742)
Q Consensus 586 ---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 659 (742)
..-|..-+..+.....+.+....+..+++.+.+. .|.-..+...+.+.-...|+.+.-.+.++-+...|+.- .
T Consensus 521 d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-t 599 (1088)
T KOG4318|consen 521 DESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-T 599 (1088)
T ss_pred chhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-c
Confidence 2235556777888888899888998888888763 34446677788888899999999999999999888755 3
Q ss_pred cccE
Q 044169 660 GCSW 663 (742)
Q Consensus 660 ~~s~ 663 (742)
|.-|
T Consensus 600 gPl~ 603 (1088)
T KOG4318|consen 600 GPLW 603 (1088)
T ss_pred ccce
Confidence 5545
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.6e-11 Score=117.18 Aligned_cols=423 Identities=11% Similarity=0.092 Sum_probs=318.2
Q ss_pred HHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHH
Q 044169 263 YIKCGMMEDAESVFEGLVQ---RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGY 339 (742)
Q Consensus 263 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 339 (742)
=...+++..|..+|++... +++..|-..+..-.++..+..|..++++....=...|..-|- -+..=-..|++..|.
T Consensus 83 Eesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGAR 161 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHH
Confidence 3345677889999988765 577788888999999999999999999987753333433332 333445679999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHc-C-
Q 044169 340 MFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN-D- 416 (742)
Q Consensus 340 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g- 416 (742)
++|+.-.+. .|+...|.+.|+.-.+...++.|..++++. -+.|++.+|-....-=.++|...-|..+|....+. |
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 999987754 799999999999999999999999999997 44899999998888888999999999999887653 1
Q ss_pred CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHH---Hh-----cC---
Q 044169 417 AACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESN--VHVGSSLIEAYNKCGSWEDAERVF---SQ-----LT--- 483 (742)
Q Consensus 417 ~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~---~~-----~~--- 483 (742)
-.-+...|.+...--.++..++.|..+++...++- +.+ ...|..+...--+-|+....++.. .+ +.
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 01123344444444456778899999999888762 333 455555555544556654444332 22 22
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---hccCcHHHHHHHHHHhHHhcC
Q 044169 484 AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS-------TFLAVLSAC---SHSGLVQDGQKVFESMVKEYG 553 (742)
Q Consensus 484 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~ 553 (742)
.-|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+++.+.++++..++ -
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--l 395 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--L 395 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--h
Confidence 235567888888888889999999999999975 666432 121111122 346789999999999875 4
Q ss_pred CCCcHHHHHHHHHHH----hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 044169 554 ILPEEAHYSCMVDLL----GRAGKLEIALIFISNL-PIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYV 628 (742)
Q Consensus 554 ~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 628 (742)
++-...++..+--+| .|+.++..|.+++... ..-|...++...|..-.+.++++....+|++.++-.|.+..++.
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS 475 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence 444555665544444 5788999999999864 46788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 044169 629 TLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQ 696 (742)
Q Consensus 629 ~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 696 (742)
..+..-...|+++.|..+|....+....-.|..-| .....|-...+.+..++.+|+.+.+..++
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw----kaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLW----KAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH----HHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999877655665555 33456666777888999999888776554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-14 Score=144.83 Aligned_cols=256 Identities=17% Similarity=0.150 Sum_probs=110.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHH-HHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044169 392 QIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYS-SILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCG 470 (742)
Q Consensus 392 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 470 (742)
+...+.+.|++++|++++++......+|+...|- .+...+-..++.+.|...++.+...+ +.++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 3556667777777777775544433234444333 34444556777788888888777654 2245566666666 6888
Q ss_pred CHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 044169 471 SWEDAERVFSQLT--AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEG-IRPTNSTFLAVLSACSHSGLVQDGQKVFES 547 (742)
Q Consensus 471 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 547 (742)
++++|.+++...- .++...+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|++.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888887664 4566677888888899999999999999877543 244556777888888999999999999999
Q ss_pred hHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 044169 548 MVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 548 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
..+. .+.|......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++.+.+|+|+.
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 8763 23346778889999999999998877776653 2345667889999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 626 VYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 626 ~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
....+++++...|+.++|.+++++.-
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999887653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-11 Score=125.63 Aligned_cols=618 Identities=10% Similarity=0.014 Sum_probs=313.8
Q ss_pred cccchhhcccCccccCCCccccchhHhhcccc------ccccCCCCCC----ccccHHHHHcccccccccccccCCCcch
Q 044169 18 FPYPVVEQVKPKKCNHRKTVEVKEPFASYSAC------QLFNKSPKRA----GLSTSDLIFNGYMNIEEKGISRNGYSTR 87 (742)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~f~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~g~~~~ 87 (742)
|+..=+.++.-..|..|+-++|.++|..|+.. .+|.-|..++ -..++ .++.++ .+.|+.+.
T Consensus 7 f~ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~-~lv~sh--------~~And~En 77 (1088)
T KOG4318|consen 7 FFPTNFLALHEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFR-GLVASH--------KEANDAEN 77 (1088)
T ss_pred cCcchHHHHHHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHH-HHHhcc--------cccccccC
Confidence 33344556777788888889999999999854 5566665433 24467 777787 77777766
Q ss_pred HHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHH---HH----HHhccCCC---------
Q 044169 88 NDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHA---LI----TKTAVCGD--------- 151 (742)
Q Consensus 88 a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~---~~----~~~g~~~~--------- 151 (742)
+. . |.+.||..++.+|+..||+..-..+-+ .+ ...|+-..
T Consensus 78 pk-----------e-------------p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~ 133 (1088)
T KOG4318|consen 78 PK-----------E-------------PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIH 133 (1088)
T ss_pred CC-----------C-------------CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcc
Confidence 64 3 778889999999988887654222211 11 12221100
Q ss_pred -----hhHHHHHHHHHHhcCChhHHHHHHccCCC----------------------------------CCcccHHHHHHH
Q 044169 152 -----QFVTASLVNMYAKCGDIKSMVAVVKQMPY----------------------------------LDIASCNCLLAG 192 (742)
Q Consensus 152 -----~~~~~~li~~~~~~g~~~~A~~~f~~~~~----------------------------------~~~~~~~~li~~ 192 (742)
..-....+....-.|-++.+.+++..+|. ++..+|..++.+
T Consensus 134 c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~ 213 (1088)
T KOG4318|consen 134 CCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKR 213 (1088)
T ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHH
Confidence 00011122222333444444444433331 455566666666
Q ss_pred HHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHH
Q 044169 193 YAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDA 272 (742)
Q Consensus 193 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 272 (742)
-.-+|+.+.|..++.+|++.|++.+..-|-.++-+ .++...+..++.-|...|+.|+..|+...+-.+.++|....+
T Consensus 214 alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 214 ALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG 290 (1088)
T ss_pred HHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc
Confidence 66677777777777777777776666655555433 566666667777777777777777776555555554442222
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHH------------HHHHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 044169 273 ESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVC------------LMREDGIDPNEYTFTVALASCASLRNSHMGYM 340 (742)
Q Consensus 273 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~------------~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 340 (742)
... .+....+++-+..-+-.| ..|.+.++ +..-.|+.-....|.... -....|.-+...+
T Consensus 291 ~e~-----sq~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veq 362 (1088)
T KOG4318|consen 291 EEG-----SQLAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQ 362 (1088)
T ss_pred ccc-----cchhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHH
Confidence 111 111111222222212222 12222221 111122222222222111 1112355555555
Q ss_pred HHHHHHHhCC---CCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh---CCCcHHHHHHHHHHhH
Q 044169 341 FHAQVIKRGM---ALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFR---NQKTEEAIEAFSQMVR 414 (742)
Q Consensus 341 i~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 414 (742)
+...+..--. ..++..+..++.- .|.+....-+...++ .-.+... .....+..++....+.
T Consensus 363 lvg~l~npt~r~s~~~V~a~~~~lrq------------yFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrk 429 (1088)
T KOG4318|consen 363 LVGQLLNPTLRDSGQNVDAFGALLRQ------------YFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRK 429 (1088)
T ss_pred HHhhhcCCccccCcchHHHHHHHHHH------------HHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCc
Confidence 5444432111 1112223333333 333332111111111 1111111 1111112222111100
Q ss_pred ------------c----CCCC-------ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044169 415 ------------N----DAAC-------DEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGS 471 (742)
Q Consensus 415 ------------~----g~~p-------~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 471 (742)
. ...| -...-+.++..|+..-+..++...-+.....-++ ..|..||+.++....
T Consensus 430 ns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdk 506 (1088)
T KOG4318|consen 430 NSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDK 506 (1088)
T ss_pred chHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHH
Confidence 0 0000 0112233444455444444444433333322222 567888888888888
Q ss_pred HHHHHHHHHhcCCCCc------hHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC-HHHHHHHHHHHhccCcHHHHHH
Q 044169 472 WEDAERVFSQLTAADV------VSWNSMIKAYSQNGRARKAIILFEKMVVEG-IRPT-NSTFLAVLSACSHSGLVQDGQK 543 (742)
Q Consensus 472 ~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~a~~~~g~~~~a~~ 543 (742)
++.|..+.++...++. .-+..+.+.+.+.+....+..+++++.+.- ..|+ ..++.-+++.-+..|+.+...+
T Consensus 507 le~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkk 586 (1088)
T KOG4318|consen 507 LEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKK 586 (1088)
T ss_pred HHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHH
Confidence 8888888888876544 356777788888888888888888887642 2333 2456667777777788777777
Q ss_pred HHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH---------------------
Q 044169 544 VFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAAC--------------------- 600 (742)
Q Consensus 544 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~--------------------- 600 (742)
.++-+.. .|+.-+ .-++....+.++...|++.++... .+|.+.....+.+.+
T Consensus 587 l~d~lvs-lgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f 661 (1088)
T KOG4318|consen 587 LADILVS-LGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKF 661 (1088)
T ss_pred HHHHHHH-hhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHH
Confidence 7666543 444332 234444556666666665554321 233333322333222
Q ss_pred HHcCCHHHHHHHHH-----------------------HHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 044169 601 RCHSDLKMAEFISK-----------------------QILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISK 657 (742)
Q Consensus 601 ~~~g~~~~a~~~~~-----------------------~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~ 657 (742)
.+.|++.++.++.+ ..+++- .+......|...|.+.|+++.|..+|.++. +.|
T Consensus 662 ~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt-~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k 737 (1088)
T KOG4318|consen 662 EKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELT-HELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSK 737 (1088)
T ss_pred HhcccccchhhccccCcccccCCCccccccCccccHHHHHHHH-hHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCc
Confidence 22233222222211 000000 012234568889999999999999998876 322
Q ss_pred CCcccEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCCch--------hhhhhhhhhhHHHHHHHhhccCCC
Q 044169 658 EPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDIGHTDN--------EKEDRVLYHSERLAVGFGLISLPA 729 (742)
Q Consensus 658 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~--------~~~~~l~~~~~~l~~~~~~~~~~~ 729 (742)
. .+-...+.++++.|.+.-..|+ .+...+.-|.|.-...|+++-+++
T Consensus 738 ~-------------------------~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~ 792 (1088)
T KOG4318|consen 738 S-------------------------PMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQT 792 (1088)
T ss_pred c-------------------------hHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhH
Confidence 2 1223456677887777777882 222233556666677777766654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-11 Score=117.94 Aligned_cols=454 Identities=13% Similarity=0.046 Sum_probs=284.7
Q ss_pred HHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHH-HHHHHccCCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHH
Q 044169 189 LLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYST-MLAICGSLSAIDEGKQLHAQTMKLQYLSK----TAVSNALLTMY 263 (742)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~ 263 (742)
|..-|.-+....+|+..|+-..+...-||...+.. +-..+.+.+.+..|..+++..+..-...+ ..+.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 33456667778999999999988888888766543 34667778889999999988776522212 33445566667
Q ss_pred HhCCChHHHHHHHhccCC--CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHH--------HHHHHHhccC
Q 044169 264 IKCGMMEDAESVFEGLVQ--RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFT--------VALASCASLR 333 (742)
Q Consensus 264 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--------~ll~~~~~~~ 333 (742)
.+.|.+++|+.-|+...+ ||..+--.|+-++..-|+.++..+.|.+|..--..||..-|. .++.-..+..
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 889999999999988755 665553344445556788899999999998654444433221 1111111100
Q ss_pred ChhHHHHHHHHHHHhCCCC---chHHHHHHHH----HHHhCCCHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhCCCcHHH
Q 044169 334 NSHMGYMFHAQVIKRGMAL---GDFVGTAIVD----MYSGLGEIWEAKKQLKEMGKSAS-SVSWNAQIAGFFRNQKTEEA 405 (742)
Q Consensus 334 ~~~~a~~i~~~~~~~g~~~---~~~~~~~li~----~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A 405 (742)
.+..|.+..-.. -..+...+|. --...| .+-..+.+..-...+- ...--.-...|.++|+++.|
T Consensus 367 -------~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g-~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 367 -------HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAG-CDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred -------HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcc-cHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 011111110000 0000000000 000000 0111111111100000 00001123457899999999
Q ss_pred HHHHHHHhHcCCCCChHHHHH--HHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044169 406 IEAFSQMVRNDAACDEFTYSS--ILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT 483 (742)
Q Consensus 406 ~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 483 (742)
+++++-+....-+.-+..-+. .+.-.....++..|.+.-+...... .-+......-.+.-...|++++|.+.+.+..
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 999998876543332222222 2222223446666766666554321 1222222222233345699999999999998
Q ss_pred CCCchHHHHHH---HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHH
Q 044169 484 AADVVSWNSMI---KAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAH 560 (742)
Q Consensus 484 ~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 560 (742)
..|...-.+|. -.+-..|+.++|+..|-++..- +..+......+.+.|....+..+|++++.+.. .-++.|+.+
T Consensus 518 ~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~--slip~dp~i 594 (840)
T KOG2003|consen 518 NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN--SLIPNDPAI 594 (840)
T ss_pred cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--ccCCCCHHH
Confidence 77776544443 3466789999999999888753 34556677788888999999999999997774 356778889
Q ss_pred HHHHHHHHhhcCCHHHHHHHHH-hCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 561 YSCMVDLLGRAGKLEIALIFIS-NLP-IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~-~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
.+.|.+.|-+.|+-..|.+..- ... ++.+..+..-|...|....=.+.++..++++--+.|+...-...++.++.+.|
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc
Confidence 9999999999999999988754 444 34467777777777777777899999999999999955554555666778899
Q ss_pred CHHHHHHHHHHHHhCC
Q 044169 639 LQADAEEQRKLMKMKE 654 (742)
Q Consensus 639 ~~~~A~~~~~~m~~~~ 654 (742)
+|.+|.++++.+..+-
T Consensus 675 nyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRKF 690 (840)
T ss_pred cHHHHHHHHHHHHHhC
Confidence 9999999999887654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.9e-11 Score=119.12 Aligned_cols=486 Identities=12% Similarity=0.061 Sum_probs=288.8
Q ss_pred CCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHcc--CCCCCcccHHHHHH
Q 044169 114 LLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQ--MPYLDIASCNCLLA 191 (742)
Q Consensus 114 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~--~~~~~~~~~~~li~ 191 (742)
..+..-+..+++-+..+.++..|.-+-+.+...+ -|+..---+.++|.-.|++..|..+... +...|..+......
T Consensus 13 ~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~ 90 (611)
T KOG1173|consen 13 ELSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAK 90 (611)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 3455556666666666667777777777776655 4455555677888888888888877754 55678888888899
Q ss_pred HHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHH
Q 044169 192 GYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMED 271 (742)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 271 (742)
.+.+..++++|+.++..-.. .-+...|-..=. +..-..+.+.... . .......+-.-...|......++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~~~~----~--~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAGEDL----M--INLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCcccccc----c--ccchhceeeeeeehhhhhccHHH
Confidence 99999999999999873311 111111100000 0000000010000 0 00000111111123344455666
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCC----CCCHHHHHHHHHHH-hccCChhHHHHHHHHHH
Q 044169 272 AESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGI----DPNEYTFTVALASC-ASLRNSHMGYMFHAQVI 346 (742)
Q Consensus 272 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~-~~~~~~~~a~~i~~~~~ 346 (742)
|...|.+....|+..+.++...-.. ..-.+.+.++.+..... +-+......+.... ++..+.+.
T Consensus 160 ar~~Y~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~--------- 228 (611)
T KOG1173|consen 160 ARDKYKEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEES--------- 228 (611)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccc---------
Confidence 6666666655555554443322111 11112222222221100 01111111111110 00000000
Q ss_pred HhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHH
Q 044169 347 KRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSS 426 (742)
Q Consensus 347 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 426 (742)
..+.++ +-+. +...++........-+-..+++.+.+++++...+.. ++....+..
T Consensus 229 -----------------~~r~~~-----~sl~--~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~ 283 (611)
T KOG1173|consen 229 -----------------LTRNED-----ESLI--GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPL 283 (611)
T ss_pred -----------------cccCch-----hhhh--hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHH
Confidence 000000 0000 113333444444455556666677777766666543 344444444
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc---hHHHHHHHHHHHcCCH
Q 044169 427 ILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADV---VSWNSMIKAYSQNGRA 503 (742)
Q Consensus 427 ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~ 503 (742)
-|..+...|+..+-..+-..+++. .+....+|-++.--|.-.|+..+|++.|.+...-|. ..|-.....|+-.|..
T Consensus 284 ~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~Eh 362 (611)
T KOG1173|consen 284 HIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEH 362 (611)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchH
Confidence 444555555554444444444443 355567888888888888999999999988774443 4899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 044169 504 RKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISN 583 (742)
Q Consensus 504 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (742)
++|+..+...-+. ++-....+.-+.--|.+.++.+.|.++|.+... -.+.|+...+-+.-+....+.+.+|..+|+.
T Consensus 363 dQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~ 439 (611)
T KOG1173|consen 363 DQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQK 439 (611)
T ss_pred HHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHH
Confidence 9999998887763 222223344455668888999999999988853 2344566777777777888899999988876
Q ss_pred CC--------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 584 LP--------IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 584 ~~--------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
.. ..+ -.++++.|..+|++.+.+++|+..+++++.+.|.++.++.+++-+|...|+.+.|.+.|.+..-
T Consensus 440 ~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 440 ALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 43 122 4667889999999999999999999999999999999999999999999999999999988653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.8e-11 Score=117.73 Aligned_cols=213 Identities=16% Similarity=0.159 Sum_probs=173.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHH
Q 044169 433 LLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIIL 509 (742)
Q Consensus 433 ~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 509 (742)
-.|+.-.+.+-++..++.... +...|--+..+|....+.++-...|.+.. +.|+.+|..-.+.+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 457888888888888876532 33337777788999999999999998876 45667787777777888899999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CC
Q 044169 510 FEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IK 587 (742)
Q Consensus 510 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 587 (742)
|++.+. +.|.. ..|.-+.-+..+.+.+++++..|++..+ .++.-++.|+-...++...++++.|.+.|+... ..
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999987 56765 5687777788889999999999999977 566677899999999999999999999998743 33
Q ss_pred CC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 588 PT---------APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 588 p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
|+ +.+-..++-.-.+ +|+.+|+.+++++++++|....+|..|+.+-.+.|+.++|+++|++..
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33 2233333333333 899999999999999999999999999999999999999999998764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-10 Score=122.58 Aligned_cols=276 Identities=12% Similarity=0.095 Sum_probs=197.5
Q ss_pred CCCHHHHHHHHHhcCCCC-Chhh-HHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHH--HHHHHhcCCCCHHHHHH
Q 044169 367 LGEIWEAKKQLKEMGKSA-SSVS-WNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYS--SILKACSLLPSLATCEQ 442 (742)
Q Consensus 367 ~g~~~~A~~~~~~~~~~~-~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~ 442 (742)
.|+++.|++.+...+... ++.. |-.......+.|+++.|.+.+.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 578888887777663222 2222 322234447888888888888888764 45543332 33556778888899988
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc---h--------HHHHHHHHHHHcCCHHHHHHHHH
Q 044169 443 IHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADV---V--------SWNSMIKAYSQNGRARKAIILFE 511 (742)
Q Consensus 443 i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~--------~~~~li~~~~~~g~~~~A~~~~~ 511 (742)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+... . .|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887765 55677888888889999999999988888773221 1 33333444444555666667777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-C
Q 044169 512 KMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-T 589 (742)
Q Consensus 512 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~ 589 (742)
.+.+. .+.+......+..++...|+.++|.+++++..+ ..|+.... ++.+....|+.+++++.+++.. ..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 345667788888899999999999999988865 34555322 2333345589999999888764 445 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 590 APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
+.....+...|...+++++|.+.++++++..| +...+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677888889999999999999999999999 566788999999999999999999886643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-09 Score=107.29 Aligned_cols=315 Identities=13% Similarity=0.084 Sum_probs=221.1
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhH-HHHHHHHHhCCCcHHHHH
Q 044169 329 CASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSW-NAQIAGFFRNQKTEEAIE 407 (742)
Q Consensus 329 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~ 407 (742)
..+.|....|...+...+.. -+..|.+.+....-..+.+.+..+....+ ..+...- -.+..+|-...+.+++++
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~-~~~h~M~~~F~~~a~~el~q~~e~~~ 248 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLP-SDMHWMKKFFLKKAYQELHQHEEALQ 248 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666655432 12333333333333334444433333322 1111111 123355666667788888
Q ss_pred HHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 044169 408 AFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKF--ESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAA 485 (742)
Q Consensus 408 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 485 (742)
-.......|+..+...-+....+.-...+++.|+.+|+.+.+... -.|..+|+.++-+-..+..+.--....-.+.+-
T Consensus 249 k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKy 328 (559)
T KOG1155|consen 249 KKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKY 328 (559)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccC
Confidence 888888888766666666666666778899999999999988631 124566766663333222222222222233344
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHH
Q 044169 486 DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCM 564 (742)
Q Consensus 486 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 564 (742)
.+.|..++..-|.-.++.++|...|++.++ +.|.. ..|+.+..-|....+...|++-++.+++ --+.|-..|-.|
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGL 404 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGL 404 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhh
Confidence 556677778888889999999999999998 46666 5677788889999999999999999875 345577889999
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHH
Q 044169 565 VDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQAD 642 (742)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 642 (742)
..+|.-.+...-|+-+|++.. .+| |...|.+|...|.+.++.++|++.|.+++...--+..++..|+++|-+.++.++
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 999999999999999998864 455 799999999999999999999999999999876678899999999999999999
Q ss_pred HHHHHHHHHh
Q 044169 643 AEEQRKLMKM 652 (742)
Q Consensus 643 A~~~~~~m~~ 652 (742)
|...+++-.+
T Consensus 485 Aa~~yek~v~ 494 (559)
T KOG1155|consen 485 AAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHH
Confidence 9999877664
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-10 Score=121.82 Aligned_cols=226 Identities=12% Similarity=0.060 Sum_probs=138.2
Q ss_pred HHHHHhCCCHHHHHHHHHhc-CC-CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHH
Q 044169 361 VDMYSGLGEIWEAKKQLKEM-GK-SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLA 438 (742)
Q Consensus 361 i~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 438 (742)
...+...|+.+.|...+++. .. +.+......+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~---------- 228 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE---------- 228 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH----------
Confidence 34455555666665555554 11 334455556666666666666666666666665433211 111000
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044169 439 TCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVV 515 (742)
Q Consensus 439 ~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 515 (742)
...|..++....+..+.+...++++.++ +.++.....+..++...|+.++|.+++++..+
T Consensus 229 -----------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 229 -----------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred -----------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0112222333333344555666666665 34666777777788888888888888877776
Q ss_pred cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHH
Q 044169 516 EGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPTAPIWR 594 (742)
Q Consensus 516 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~ 594 (742)
. .||.... ++.+....++.+++.+..+...+ ..+-|...+.++...+.+.|++++|.+.|++.. ..|+...+.
T Consensus 292 ~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~ 365 (398)
T PRK10747 292 R--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA 365 (398)
T ss_pred c--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 3 4444221 22333345778888888877765 334455567777888888888888888887754 567877777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 044169 595 PLFAACRCHSDLKMAEFISKQILELD 620 (742)
Q Consensus 595 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 620 (742)
.+...+.+.|+.++|.+.+++.+.+.
T Consensus 366 ~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 366 WLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 78888888888888888888877653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-09 Score=105.12 Aligned_cols=348 Identities=11% Similarity=0.051 Sum_probs=204.4
Q ss_pred HHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHH-HHHHHHHhCCCcchHHH
Q 044169 227 ICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWT-AIINGFKQHGDYEKPLR 305 (742)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~ 305 (742)
.+.+.|....|...+...+..- +..|.+-+....-..+.+.+..+-...+..+...-. -+..++-...+.++++.
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~ 248 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQ 248 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666665554321 223333333333333444444443333332222111 23345555566777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCC--CchHHHHHHHHHHHhCCCHHH-HHHHHHhcCC
Q 044169 306 LVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMA--LGDFVGTAIVDMYSGLGEIWE-AKKQLKEMGK 382 (742)
Q Consensus 306 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~ 382 (742)
-.+.....|+.-+...-+....+.-...++++|+.+|+++.+...- .|..+|+.++..-..+.++.- |..++.- .
T Consensus 249 k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i-d- 326 (559)
T KOG1155|consen 249 KKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI-D- 326 (559)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh-c-
Confidence 7777777776555544444444455667788888888888776421 244555555433332222221 2222222 2
Q ss_pred CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 044169 383 SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSL 462 (742)
Q Consensus 383 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~l 462 (742)
.-.+.|..++..-|.-.++.++|...|++..+.+ +-....|+.+.+-|....+...|.+-++.+++-+ +.|-..|-.|
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGL 404 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGL 404 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhh
Confidence 2234456666666777777888888888777654 2234566667777777777777877777777754 5667777777
Q ss_pred HHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 044169 463 IEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQ 539 (742)
Q Consensus 463 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 539 (742)
.++|.-.+...-|.-.|++.. +.|...|.+|..+|.+.++.++|++.|++....| ..+...+..+...+-+.++.+
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHH
Confidence 777777777777777777664 4567777778788877778888888877777654 335566777777777777777
Q ss_pred HHHHHHHHhHHhc---CC-CCc-HHHHHHHHHHHhhcCCHHHHHHHHHh
Q 044169 540 DGQKVFESMVKEY---GI-LPE-EAHYSCMVDLLGRAGKLEIALIFISN 583 (742)
Q Consensus 540 ~a~~~~~~m~~~~---~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (742)
+|...|+.-++.. |. .|. ...-.-|..-+.+.+++++|......
T Consensus 484 eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 484 EAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 7777776665422 21 221 11122244555666666666654443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-11 Score=124.00 Aligned_cols=277 Identities=13% Similarity=0.082 Sum_probs=216.4
Q ss_pred CHHHHHHHHHhcCC-CCChh-hHHHHHHHHHhCCCcHHHHHHHHHHhHcC-C-CCChHHHHHHHHHhcCCCCHHHHHHHH
Q 044169 369 EIWEAKKQLKEMGK-SASSV-SWNAQIAGFFRNQKTEEAIEAFSQMVRND-A-ACDEFTYSSILKACSLLPSLATCEQIH 444 (742)
Q Consensus 369 ~~~~A~~~~~~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~-~p~~~t~~~ll~~~~~~g~~~~a~~i~ 444 (742)
...+|...|.+.+. .+|+. ....+..+|...+++++|.++|+...+.. . .-+..+|.+++-.+-+ +-+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45677788877621 33433 33457788999999999999999987753 1 1245677777765432 1222222
Q ss_pred H-HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 044169 445 S-RIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAAD---VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRP 520 (742)
Q Consensus 445 ~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 520 (742)
. .+.+. -+..+.+|-++.++|.-.++.+.|.+.|++..+.| ..+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 22332 25668999999999999999999999999988544 46888888888889999999999999885 566
Q ss_pred CH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHH
Q 044169 521 TN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPL 596 (742)
Q Consensus 521 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l 596 (742)
.. ..|..+...|.+.++++.|+-.|+.+. .+.|. .....++...+.+.|+.|+|+.++++.. ..| |+..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 65 568888889999999999999999885 45554 5567788899999999999999999864 344 55555566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 597 FAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 597 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
+..+...+++++|...++++.++-|++..++..++.+|-+.|+.+.|..-|.-+.+.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 66778889999999999999999999999999999999999999999999888776554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-09 Score=115.58 Aligned_cols=43 Identities=2% Similarity=-0.091 Sum_probs=25.7
Q ss_pred HHHHHHHhcCC---CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 044169 474 DAERVFSQLTA---ADVVSWNSMIKAYSQNGRARKAIILFEKMVVE 516 (742)
Q Consensus 474 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 516 (742)
...+.++..+. .++..+..+...+...|+.++|.+++++..+.
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 33444444442 35566666666677777777777777776663
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.8e-11 Score=124.07 Aligned_cols=246 Identities=14% Similarity=0.143 Sum_probs=196.0
Q ss_pred CcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044169 401 KTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSK--FESNVHVGSSLIEAYNKCGSWEDAERV 478 (742)
Q Consensus 401 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 478 (742)
+..+|+..|...... +.-+......+..+|-..+++++++.+|+.+.+.. .--+..+|.+.+--+-+.-.+.--.+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 467899999984443 44455777888899999999999999999998752 123466777776444332222222222
Q ss_pred HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc
Q 044169 479 FSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRP-TNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE 557 (742)
Q Consensus 479 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 557 (742)
+-.+.+..+.+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+. .|
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~ 485 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VD 485 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CC
Confidence 2233355778999999999999999999999999998 677 458899888888999999999999988753 45
Q ss_pred HHHHH---HHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044169 558 EAHYS---CMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSN 632 (742)
Q Consensus 558 ~~~~~---~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 632 (742)
+.+|+ .|.-.|.+.++++.|+-.|++.. +.| +.+....+...+.+.|..++|++++++++.++|.|+-.-...+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 55554 56678999999999999999865 666 56666777778999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 044169 633 MYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 633 ~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
++...+++++|...++++++--
T Consensus 566 il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhC
Confidence 9999999999999999988633
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-09 Score=116.25 Aligned_cols=279 Identities=13% Similarity=0.071 Sum_probs=177.7
Q ss_pred hCCCHHHHHHHHHhcC-CCCCh-hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCCh--HHHHHHHHHhcCCCCHHHHH
Q 044169 366 GLGEIWEAKKQLKEMG-KSASS-VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDE--FTYSSILKACSLLPSLATCE 441 (742)
Q Consensus 366 ~~g~~~~A~~~~~~~~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~ 441 (742)
..|+++.|.+.+.+.. ..|+. ..+-.......+.|+.++|.+.+.+..+.. |+. .........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4577777777776652 13332 223333456667788888888887766543 333 22333456666777888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHH----HHHHHHHcCCHHHHHHHHHHHH
Q 044169 442 QIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAA---DVVSWNS----MIKAYSQNGRARKAIILFEKMV 514 (742)
Q Consensus 442 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----li~~~~~~g~~~~A~~~~~~m~ 514 (742)
..++.+.+.. +.+..+...+..+|...|++++|.+.+..+.+. +...+.. ...++...+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8877777764 445667777778888888888888877777632 2222211 1112223333333444555555
Q ss_pred HcC---CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHH---HHHHHHHHhhcCCHHHHHHHHHhCC-CC
Q 044169 515 VEG---IRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAH---YSCMVDLLGRAGKLEIALIFISNLP-IK 587 (742)
Q Consensus 515 ~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 587 (742)
+.. .+.+...+..+...+...|+.++|.+++++..+. .||... .....-.....++.+.+.+.+++.. ..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 431 1126677777888888999999999999888763 233321 1111122233577778888877643 34
Q ss_pred CC-H--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 588 PT-A--PIWRPLFAACRCHSDLKMAEFISK--QILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 588 p~-~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
|+ + ....++...|.+.|++++|.+.++ ...+..| ++..+..++.++.+.|+.++|.+++++..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44 4 556788888899999999999999 5677788 55557799999999999999998888754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.37 E-value=4e-12 Score=127.91 Aligned_cols=182 Identities=15% Similarity=0.152 Sum_probs=67.3
Q ss_pred HhCCCHHHHHHHHHhc-CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcC-CCCChHHHHHHHHHhcCCCCHHHHHH
Q 044169 365 SGLGEIWEAKKQLKEM-GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRND-AACDEFTYSSILKACSLLPSLATCEQ 442 (742)
Q Consensus 365 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~ 442 (742)
...++.++|.+++... ...++...+..++..+.+.++++++.+++++..... .+.+...|......+.+.|+.++|..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444555555444433 113444445555555666666666666666554322 22344444455555555555555555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 044169 443 IHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIR 519 (742)
Q Consensus 443 i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 519 (742)
.++...+.. +.+..+...++..+...|+.+++.+++.... +.|...|..+..+|...|+.++|+..|++..+. .+
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p 245 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NP 245 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-ST
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc-cc
Confidence 555555542 2234455555555555555555444444332 334445555555555556666666666555543 12
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 044169 520 PTNSTFLAVLSACSHSGLVQDGQKVFESM 548 (742)
Q Consensus 520 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 548 (742)
.|......+..++...|+.++|.++.+++
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp T-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 23444555555555555555555555444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.3e-09 Score=103.16 Aligned_cols=406 Identities=12% Similarity=0.087 Sum_probs=250.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHchhCCCCCC-hhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHh
Q 044169 188 CLLAGYAKNALFDQAFSFFLKLDGIDVQPN-HYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSK-TAVSNALLTMYIK 265 (742)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~ 265 (742)
....-|.++|.+++|++.|....+. .|| +..|.....+|...|++++..+--...++. .|+ +..+..-.+++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 3344566677777777777777663 566 556666666777777777766655555543 233 3344455556666
Q ss_pred CCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHH---------HHHC--CCCCCHHHHHHHHHHHhccCC
Q 044169 266 CGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCL---------MRED--GIDPNEYTFTVALASCASLRN 334 (742)
Q Consensus 266 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~~~--g~~p~~~t~~~ll~~~~~~~~ 334 (742)
.|++++|+.= +|-.++..++....-.--+.+++.. |.+. -+-|+.....+.+..+-..-.
T Consensus 196 lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 196 LGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 6777766431 2222333333222221122222221 1111 133555444444443321100
Q ss_pred hhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC-CCHHHHHHHHHhc-------C-C-CCCh------hhHHHHHHHHHh
Q 044169 335 SHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGL-GEIWEAKKQLKEM-------G-K-SASS------VSWNAQIAGFFR 398 (742)
Q Consensus 335 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~-------~-~-~~~~------~~~~~li~~~~~ 398 (742)
. .+...+-..|...-..+=..+... ..+..|...+.+- . . .-|. .+.+....-+.-
T Consensus 267 ~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL 338 (606)
T KOG0547|consen 267 P--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFL 338 (606)
T ss_pred c--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhh
Confidence 0 000000011111111121122211 1233333333222 0 0 1111 111112222344
Q ss_pred CCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044169 399 NQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERV 478 (742)
Q Consensus 399 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 478 (742)
.|+.-.|...|+..+.....++.. |..+..+|....+.++..+.|....+.+ +-++.+|..-..++.-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 688899999999998876544442 7777788999999999999999998875 55677788888888888999999999
Q ss_pred HHhcCC---CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 044169 479 FSQLTA---ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGIL 555 (742)
Q Consensus 479 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 555 (742)
|++... .++..|-.+..+..+.+++++++..|++..++ ++.-...|+.....+..++++++|.+.|+..++ +.
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE 492 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LE 492 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hc
Confidence 998873 35567777777777899999999999999986 444457899999999999999999999999864 23
Q ss_pred Cc---------HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044169 556 PE---------EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDP 621 (742)
Q Consensus 556 p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 621 (742)
|+ +.+.-.++-.-.+ +++..|.+++++.. ..| ....+.+|...-.+.|+.++|+++|++...+-.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33 2223333333333 89999999999864 455 467788999999999999999999999988643
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-07 Score=96.13 Aligned_cols=513 Identities=13% Similarity=0.170 Sum_probs=309.8
Q ss_pred hhHHHHHHhhccccchHHHHHHHHHHHHh-ccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhC
Q 044169 118 QFVIEVLSYCSREECLELGRRYHALITKT-AVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKN 196 (742)
Q Consensus 118 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 196 (742)
..|...++....+|++..-+..|+..+.. .+.....+|...+......|-++-+.+++++..+-+...-+--|..+++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 35666666666777777777777766654 34445567778888777888888888888887766666677778888888
Q ss_pred CChHHHHHHHHHchhCC------CCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCC--CCC--hhHHHHHHHHHHhC
Q 044169 197 ALFDQAFSFFLKLDGID------VQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQY--LSK--TAVSNALLTMYIKC 266 (742)
Q Consensus 197 g~~~~A~~~~~~m~~~~------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~~~~li~~~~~~ 266 (742)
+++++|-+.+....... -+.+...|..+-...++.-+.-....+ +.+++.|+ -+| ...|++|.+.|.+.
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 88888888887765321 133444555555555544333322222 22233332 233 45689999999999
Q ss_pred CChHHHHHHHhccCCC--CcchHHHHHHHHHhC----------------CC------cchHHHHHHHHHHCCC-------
Q 044169 267 GMMEDAESVFEGLVQR--NVISWTAIINGFKQH----------------GD------YEKPLRLVCLMREDGI------- 315 (742)
Q Consensus 267 g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~----------------g~------~~~A~~~~~~m~~~g~------- 315 (742)
|.+++|.++|++..+. .+.-++.+.++|++- |+ ++-.+.-|+.+.+.+.
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999876552 233344444444321 11 1122333444333210
Q ss_pred ----CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhC-----CCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCC--
Q 044169 316 ----DPNEYTFTVALASCASLRNSHMGYMFHAQVIKRG-----MALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSA-- 384 (742)
Q Consensus 316 ----~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-- 384 (742)
+.+..++..-. -...|+..+....+.+.++.- ...-...|..+...|-..|+++.|..+|++.-..|
T Consensus 342 LRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 01111221111 122345555566676666532 11224578889999999999999999999983121
Q ss_pred C----hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCC----------C-------ChHHHHHHHHHhcCCCCHHHHHHH
Q 044169 385 S----SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAA----------C-------DEFTYSSILKACSLLPSLATCEQI 443 (742)
Q Consensus 385 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-------~~~t~~~ll~~~~~~g~~~~a~~i 443 (742)
. ...|..-...=.++.+++.|+.++++.....-. | +...|...+..--..|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 1 234555555566778888999888776532111 1 122344445545556788888999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCch-HHHHHHHHHHH---cCCHHHHHHHHHHHHH
Q 044169 444 HSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT----AADVV-SWNSMIKAYSQ---NGRARKAIILFEKMVV 515 (742)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m~~ 515 (742)
++.+.+..+.....+. .....+-...-++++.+++++-. -|++. .|+.-+.-+.+ ....+.|..+|++.++
T Consensus 500 YdriidLriaTPqii~-NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIII-NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHhcCCHHHHH-HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 9999887654333222 22333456677899999999865 34543 78887776654 2368999999999998
Q ss_pred cCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHhHHhcCCCCcH--HHHHHHHHH----Hhh---cCCHHHHHHHHHhC
Q 044169 516 EGIRPTNSTFLAVLS--ACSHSGLVQDGQKVFESMVKEYGILPEE--AHYSCMVDL----LGR---AGKLEIALIFISNL 584 (742)
Q Consensus 516 ~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~----~~~---~g~~~~A~~~~~~~ 584 (742)
|.+|...-+..|+- .--.-|....|+.+++++.. ++++.. ..|+..|.- |+- .+-+++|++.+
T Consensus 579 -~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L--- 652 (835)
T KOG2047|consen 579 -GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL--- 652 (835)
T ss_pred -cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC---
Confidence 67776643332332 22345888899999998754 555543 346655532 211 11234444332
Q ss_pred CCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHhc-CCC-CchhHHHHHHHHHhcCCHHHH
Q 044169 585 PIKPTAPIWRP---LFAACRCHSDLKMAEFISKQILEL-DPD-DAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 585 ~~~p~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~-~p~-~~~~~~~l~~~y~~~g~~~~A 643 (742)
||..+-.. +...-.+.|..++|..++...-++ +|. +...+.+.-.--.+.|+-+--
T Consensus 653 ---p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~ 713 (835)
T KOG2047|consen 653 ---PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTY 713 (835)
T ss_pred ---ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHH
Confidence 33222211 222345678888888888877776 443 556677777777777774433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-10 Score=111.31 Aligned_cols=198 Identities=14% Similarity=0.077 Sum_probs=165.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044169 454 SNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLS 530 (742)
Q Consensus 454 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 530 (742)
.....+..+...|...|++++|.+.+++.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 345677788889999999999999998775 3345678888899999999999999999998853 334567777888
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKM 608 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~ 608 (742)
.+...|++++|.+.++...+..........+..+..++...|++++|.+.+++.. ..| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 8999999999999999987632223345567788999999999999999998764 333 46778888889999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 609 AEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 609 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
|...++++++..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888888999999999999999999999887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.1e-09 Score=98.17 Aligned_cols=465 Identities=9% Similarity=0.030 Sum_probs=259.5
Q ss_pred hccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHH
Q 044169 127 CSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAF 203 (742)
Q Consensus 127 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 203 (742)
+...+|+..|..+++.-...+-+....+.--+...|.+.|++++|..++.-+.+ ++...|--|.-++.-.|.+.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 444567888888877666544333334444556777888999999888876543 45566766776777778888888
Q ss_pred HHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCC-
Q 044169 204 SFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQR- 282 (742)
Q Consensus 204 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 282 (742)
.+-....+ +...-..++...-+.++-++-.+++..+... ..-.-+|.++.--.-.+++|++++.++...
T Consensus 112 ~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 112 SIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77655532 2333344555556677777777776665432 223344555555556688888888888664
Q ss_pred -CcchHHHHH-HHHHhCCCcchHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHH
Q 044169 283 -NVISWTAII-NGFKQHGDYEKPLRLVCLMREDGIDPNE-YTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTA 359 (742)
Q Consensus 283 -~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 359 (742)
+-...|.-+ -+|.+..-++-+.+++.-.... .||+ ...+.......+.=+-..+.+-...+.+.+-..
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~------- 252 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE------- 252 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-------
Confidence 334444433 4566777777777777766554 2332 233322222222212222222222222221100
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHH
Q 044169 360 IVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLAT 439 (742)
Q Consensus 360 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 439 (742)
++.+..+.+. +.+. -...+.|++++-.+.+. -|.. -..++--|.+.+++.+
T Consensus 253 ----------~~f~~~l~rH-----NLVv----------FrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqe 303 (557)
T KOG3785|consen 253 ----------YPFIEYLCRH-----NLVV----------FRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQE 303 (557)
T ss_pred ----------chhHHHHHHc-----CeEE----------EeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHH
Confidence 0111111100 0000 01223444444333221 1111 1122223444455554
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHH-----HHHHhcCCHHHHHHHHHhcC----C-CCchHHHHHHHHHHHcCCHHHHHHH
Q 044169 440 CEQIHSRIVKSKFESNVHVGSSLI-----EAYNKCGSWEDAERVFSQLT----A-ADVVSWNSMIKAYSQNGRARKAIIL 509 (742)
Q Consensus 440 a~~i~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~~~----~-~~~~~~~~li~~~~~~g~~~~A~~~ 509 (742)
|..+.+.+.- ..|-..+...++ .-......+.-|.+.|+-.- . ..+..-.++...+.-..++++++..
T Consensus 304 A~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Y 381 (557)
T KOG3785|consen 304 AISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTY 381 (557)
T ss_pred HHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 4444333211 111111111111 11112223455666665443 1 2233455677777777889999998
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHH-HHHHHHhhcCCHHHHHHHHHhCCCCC
Q 044169 510 FEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYS-CMVDLLGRAGKLEIALIFISNLPIKP 588 (742)
Q Consensus 510 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~p 588 (742)
+.....- +..|...-..+..+.+..|.+.+|+++|-.+.. ..+ .|..+|. .|.++|.++|+.+.|++++-++..+.
T Consensus 382 lnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~ 458 (557)
T KOG3785|consen 382 LNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS 458 (557)
T ss_pred HHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch
Confidence 8888775 444444444578899999999999999977632 122 3445554 56689999999999999999887555
Q ss_pred CHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 589 TAPIWRPLFA-ACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 589 ~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+..+...+|. -|.+.+.+=-|-+.|+.+-.++| +|..|. |+.....-+|..+....
T Consensus 459 e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnWe---------GKRGACaG~f~~l~~~~ 515 (557)
T KOG3785|consen 459 ERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-TPENWE---------GKRGACAGLFRQLANHK 515 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-CccccC---------CccchHHHHHHHHHcCC
Confidence 6666555555 49999999999999999988998 555443 44444455565554433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-08 Score=98.54 Aligned_cols=285 Identities=13% Similarity=0.082 Sum_probs=156.9
Q ss_pred CCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHH
Q 044169 297 HGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQ 376 (742)
Q Consensus 297 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 376 (742)
.|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-+...++-+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655554333 2334444455555666666666666665554455556666666677777777777766
Q ss_pred HHhc---CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCC
Q 044169 377 LKEM---GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFE 453 (742)
Q Consensus 377 ~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~ 453 (742)
.+++ . +...........+|.+.|++.+.+.++..|.+.|.--++..- +
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~----------- 226 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------R----------- 226 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------H-----------
Confidence 6554 3 556677777888888888888888888888877754332110 0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044169 454 SNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLS 530 (742)
Q Consensus 454 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 530 (742)
....+|..+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+.. .+-
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~ 302 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLI 302 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHH
Confidence 011223333333333333333334444444 3345555566666677777777777777777766666521 222
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNL-PIKPTAPIWRPLFAACRCHSDLKMA 609 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a 609 (742)
.+.+.++...-++..+...+..+..| ..+.+|...|.+.+.+.+|.+.|+.. ...|+...|+-+..++.+.|+.++|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 34555666555555555554333323 34445555555555555555555432 2344444455555555555555555
Q ss_pred HHHHHHHH
Q 044169 610 EFISKQIL 617 (742)
Q Consensus 610 ~~~~~~~~ 617 (742)
.+..++.+
T Consensus 381 ~~~r~e~L 388 (400)
T COG3071 381 EQVRREAL 388 (400)
T ss_pred HHHHHHHH
Confidence 54444444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-06 Score=89.60 Aligned_cols=559 Identities=11% Similarity=0.074 Sum_probs=344.1
Q ss_pred CccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHh--------hccc
Q 044169 59 AGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSY--------CSRE 130 (742)
Q Consensus 59 ~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~--------~~~~ 130 (742)
++-+|- .-|... .. ....+-.-+|++.+..=+. +-..|...|++ |.-.
T Consensus 26 svk~W~-RYIe~k--------~~-sp~k~~~~lYERal~~lp~--------------sykiW~~YL~~R~~~vk~~~~T~ 81 (835)
T KOG2047|consen 26 SVKCWL-RYIEHK--------AG-SPDKQRNLLYERALKELPG--------------SYKIWYDYLKARRAQVKHLCPTD 81 (835)
T ss_pred hHHHHH-HHHHHH--------cc-CChHHHHHHHHHHHHHCCC--------------chHHHHHHHHHHHHHhhccCCCC
Confidence 445566 555544 33 2333455577777665433 55566666633 2222
Q ss_pred cchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCC-----CCcccHHHHHHHHHhCCChHHHHHH
Q 044169 131 ECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPY-----LDIASCNCLLAGYAKNALFDQAFSF 205 (742)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~ 205 (742)
..+......|+..... .+.-+.+|-..+....+.|++...+..|++... .....|...+.-....+-++-++.+
T Consensus 82 ~~~~~vn~c~er~lv~-mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rv 160 (835)
T KOG2047|consen 82 PAYESVNNCFERCLVF-MHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRV 160 (835)
T ss_pred hHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHH
Confidence 2334444444433322 134567888889999999999999999987532 3456799999998999999999999
Q ss_pred HHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHh------CCCCChhHHHHHHHHHHhCCCh---HHHHHHH
Q 044169 206 FLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKL------QYLSKTAVSNALLTMYIKCGMM---EDAESVF 276 (742)
Q Consensus 206 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~---~~A~~~~ 276 (742)
|++-.+. .| ..-.-.|..++..+++++|.+.+...+.. ..+.+-..|.-+-+..++.-+. -....++
T Consensus 161 yrRYLk~--~P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaii 236 (835)
T KOG2047|consen 161 YRRYLKV--AP--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAII 236 (835)
T ss_pred HHHHHhc--CH--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHH
Confidence 9999763 33 33666778888999999999999877542 2355666777777776665432 2344455
Q ss_pred hccCCC--C--cchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------------C--
Q 044169 277 EGLVQR--N--VISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLR----------------N-- 334 (742)
Q Consensus 277 ~~~~~~--~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------------~-- 334 (742)
+.+..+ | ...|++|.+-|.+.|.+++|.++|++-... ..+..-|+.+.++|+.-. +
T Consensus 237 R~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~e 314 (835)
T KOG2047|consen 237 RGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEE 314 (835)
T ss_pred HhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChh
Confidence 555442 3 346999999999999999999999987765 233444555555544321 1
Q ss_pred ----hhHHHHHHHHHHHhCC-----------CCchHHHHHHHHHHHhCCCHHHHHHHHHhc--CCCCC------hhhHHH
Q 044169 335 ----SHMGYMFHAQVIKRGM-----------ALGDFVGTAIVDMYSGLGEIWEAKKQLKEM--GKSAS------SVSWNA 391 (742)
Q Consensus 335 ----~~~a~~i~~~~~~~g~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~------~~~~~~ 391 (742)
++....-|+.+..... +.++..|..-+.. ..|+..+-...+.+. .+.|. ...|..
T Consensus 315 d~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~ 392 (835)
T KOG2047|consen 315 DDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVE 392 (835)
T ss_pred hhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHH
Confidence 1111122222222110 1111122211111 224444444555444 11111 245788
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHcCCCCC---hHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-----------CCCC---
Q 044169 392 QIAGFFRNQKTEEAIEAFSQMVRNDAACD---EFTYSSILKACSLLPSLATCEQIHSRIVKS-----------KFES--- 454 (742)
Q Consensus 392 li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~-----------~~~~--- 454 (742)
+...|-.+|+.+.|..+|++..+-..+-- ..+|..-...-.+..+++.|..+.+...-. +.++
T Consensus 393 faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 393 FAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR 472 (835)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence 88888889999999999988766433221 233444444445666777777777655321 1111
Q ss_pred ---chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHH---HHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHH
Q 044169 455 ---NVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMI---KAYSQNGRARKAIILFEKMVVEGIRPTN-STFLA 527 (742)
Q Consensus 455 ---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ 527 (742)
+..+|...++.--..|-++....+++++.+..+.|=..++ .-+-.+.-++++.++|++-+..=-.|+. ..|+.
T Consensus 473 lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~t 552 (835)
T KOG2047|consen 473 LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNT 552 (835)
T ss_pred HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHH
Confidence 2345555666666778888888888877643332222222 2233456688898888877665334555 35666
Q ss_pred HHHHHhc---cCcHHHHHHHHHHhHHhcCCCCcHH--HHHHHHHHHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 044169 528 VLSACSH---SGLVQDGQKVFESMVKEYGILPEEA--HYSCMVDLLGRAGKLEIALIFISNLPIKPT----APIWRPLFA 598 (742)
Q Consensus 528 ll~a~~~---~g~~~~a~~~~~~m~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~ 598 (742)
.+.-+.+ ...++.|..+|++..+ |.+|... .|-.....=.+-|....|+.++++....-. ...|+.+|.
T Consensus 553 YLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 553 YLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6655443 3468999999999986 7776543 233333333456888899999998752222 345666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 599 ACRCHSDLKMAEFISKQILELDPDDA--AVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
-....=-......+|+++++.-|++- ......+++-.+.|..+.|..++.--.+
T Consensus 631 kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 631 KAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 44333335567889999999888643 3456678888999999999999866544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.9e-09 Score=98.12 Aligned_cols=223 Identities=14% Similarity=0.143 Sum_probs=141.1
Q ss_pred CCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCChHHH
Q 044169 196 NALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSK---TAVSNALLTMYIKCGMMEDA 272 (742)
Q Consensus 196 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 272 (742)
+.+.++|.++|-+|.+.+ +-+..+..++-+.+.+.|.++.|.++|+.+.++.--+. ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467788888888887642 22344555677888888999999999988876531111 22335667778889999999
Q ss_pred HHHHhccCCCC---cchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 044169 273 ESVFEGLVQRN---VISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRG 349 (742)
Q Consensus 273 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g 349 (742)
+.+|..+.+.+ ......|+..|-...+|++|+++-+++.+.|-.+..+-..
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA-------------------------- 180 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA-------------------------- 180 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH--------------------------
Confidence 99999887743 3456678888999999999999998888765443322111
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CC-CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHH
Q 044169 350 MALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GK-SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSI 427 (742)
Q Consensus 350 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 427 (742)
..|.-|...+....+++.|..++.+. .. +..+..--.+...+...|+++.|.+.++...+.+..--+.+...+
T Consensus 181 -----qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 181 -----QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred -----HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 12223334444445566666666554 11 223333334456666677777777777776665544344455555
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHh
Q 044169 428 LKACSLLPSLATCEQIHSRIVKS 450 (742)
Q Consensus 428 l~~~~~~g~~~~a~~i~~~~~~~ 450 (742)
..+|...|+.+++..++..+.+.
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc
Confidence 56666666666666665555554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-09 Score=112.83 Aligned_cols=231 Identities=16% Similarity=0.190 Sum_probs=174.2
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC
Q 044169 421 EFTYSSILKACSLLPSLATCEQIHSRIVKS-----KF-ESNV-HVGSSLIEAYNKCGSWEDAERVFSQLTA-------AD 486 (742)
Q Consensus 421 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~ 486 (742)
..|...+...|...|+++.|..+++...+. |. .|.. ...+.+...|...+++++|..+|+++.. ++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888899999999999988877654 21 2232 3344577889999999999999988751 11
Q ss_pred ----chHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCC-CHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcC--
Q 044169 487 ----VVSWNSMIKAYSQNGRARKAIILFEKMVVE-----GIRP-TNS-TFLAVLSACSHSGLVQDGQKVFESMVKEYG-- 553 (742)
Q Consensus 487 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p-~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 553 (742)
..+++.|..+|.+.|++++|...+++..+- |..+ ... -++.+...|...+.+++|..+++...+...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 237788888999999999988888776532 2222 222 367777789999999999999988766433
Q ss_pred CCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-------C--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044169 554 ILPE----EAHYSCMVDLLGRAGKLEIALIFISNLP-------I--KP-TAPIWRPLFAACRCHSDLKMAEFISKQILEL 619 (742)
Q Consensus 554 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 619 (742)
..++ ..+++.|...|...|++++|.++++++. . .+ ....++.+...|.+.++.++|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 3478999999999999999999998763 1 12 2456788888999999999999999887653
Q ss_pred ----CC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 620 ----DP---DDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 620 ----~p---~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
.| +-..+|..|+.+|...|++++|.++.....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44 445678999999999999999999988776
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-08 Score=95.51 Aligned_cols=268 Identities=11% Similarity=0.106 Sum_probs=132.6
Q ss_pred CCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhCCCHHHH
Q 044169 297 HGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALG---DFVGTAIVDMYSGLGEIWEA 373 (742)
Q Consensus 297 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A 373 (742)
+++.++|.++|-+|.+.. +-+..+-.++-+.+.+.|..|.|.++|+.+.++---+. ....-.|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567888888888887631 22233334555666667777777777776665421111 22334455666667777777
Q ss_pred HHHHHhcCCCC--ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChH----HHHHHHHHhcCCCCHHHHHHHHHHH
Q 044169 374 KKQLKEMGKSA--SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEF----TYSSILKACSLLPSLATCEQIHSRI 447 (742)
Q Consensus 374 ~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~i~~~~ 447 (742)
+.+|..+...+ -..+...++..|-+..++++|++.-+++...+-.+..+ .|.-+...+....+.+.|..+++..
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 77776663112 23344556666666667777776666666554333322 2222333333344444444444444
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044169 448 VKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLA 527 (742)
Q Consensus 448 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 527 (742)
.+.+ +..+..--.+. ..+...|+++.|.+.++...+.+..--..+...
T Consensus 207 lqa~-~~cvRAsi~lG-------------------------------~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 207 LQAD-KKCVRASIILG-------------------------------RVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred HhhC-ccceehhhhhh-------------------------------HHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 4332 22222333333 444455555555555555554321111233444
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCCCCHHHHHHHHHHH
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFIS-NLPIKPTAPIWRPLFAAC 600 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~p~~~~~~~l~~~~ 600 (742)
|..+|.+.|+.++....+..+.+. .+....-..+.+......-.+.|...+. .+..+|+...+..|+...
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence 555555555555555555555331 2233333333333333333344433332 233455555555555543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-08 Score=97.93 Aligned_cols=285 Identities=13% Similarity=0.065 Sum_probs=177.4
Q ss_pred CCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 044169 196 NALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESV 275 (742)
Q Consensus 196 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 275 (742)
.|+|.+|.++..+-.+.+-.| ...|.....+.-+.|+.+.+-+++.++.+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888887766655322 3446666677778888888888888887764456666777777788888888888777
Q ss_pred Hhcc---CCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 044169 276 FEGL---VQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMAL 352 (742)
Q Consensus 276 ~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~ 352 (742)
.++. ..+++........+|.+.|++.....++..|.+.|+-.|+..-..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------
Confidence 6655 335777888888999999999999999999988876655432110
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHH
Q 044169 353 GDFVGTAIVDMYSGLGEIWEAKKQLKEMG--KSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKA 430 (742)
Q Consensus 353 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 430 (742)
...++..+++-....+..+.-...++..+ ...++..-.+++.-+.+.|+.++|.++..+..+.+..|+..+ +-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHh
Confidence 01122223332222233333333344331 123344555666777778888888888887777766655222 223
Q ss_pred hcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHH
Q 044169 431 CSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT--AADVVSWNSMIKAYSQNGRARKAII 508 (742)
Q Consensus 431 ~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 508 (742)
+.+.++...-.+..+...+.. +.++..+.+|...|.+.+.+.+|...|+... .++..+|+-+..+|.+.|+.++|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 455555555555555444332 2333556666666666666666666666443 4555566666666666666666666
Q ss_pred HHHHHH
Q 044169 509 LFEKMV 514 (742)
Q Consensus 509 ~~~~m~ 514 (742)
.+++..
T Consensus 383 ~r~e~L 388 (400)
T COG3071 383 VRREAL 388 (400)
T ss_pred HHHHHH
Confidence 665544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-07 Score=97.38 Aligned_cols=399 Identities=15% Similarity=0.110 Sum_probs=260.5
Q ss_pred hCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHH-H
Q 044169 247 LQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ---RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYT-F 322 (742)
Q Consensus 247 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~ 322 (742)
..+.-|..+|..|.-+..++|+++.+.+.|++... .....|+.+...|...|.-..|+.+++.-....-.|+..+ +
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567889999999999999999999999998754 3556799999999999999999999988765433354333 3
Q ss_pred HHHHHHHh-ccCChhHHHHHHHHHHHh--CC--CCchHHHHHHHHHHHhCC-----------CHHHHHHHHHhc----CC
Q 044169 323 TVALASCA-SLRNSHMGYMFHAQVIKR--GM--ALGDFVGTAIVDMYSGLG-----------EIWEAKKQLKEM----GK 382 (742)
Q Consensus 323 ~~ll~~~~-~~~~~~~a~~i~~~~~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~----~~ 382 (742)
-..-..|. +.+.++++..+-..++.. +. ...+..+..+.-+|...- ...++.+.+++. +.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33334444 447777777776666652 21 122334444444443321 133455556655 21
Q ss_pred CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-CCCCchhHHHH
Q 044169 383 SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKS-KFESNVHVGSS 461 (742)
Q Consensus 383 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~-~~~~~~~~~~~ 461 (742)
.|++.-| +.--|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++..|+.+.+..... |.. ......
T Consensus 477 dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N--~~l~~~ 552 (799)
T KOG4162|consen 477 DPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN--HVLMDG 552 (799)
T ss_pred CchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh--hhhchh
Confidence 3333333 33456778899999999999998876778889998888899999999999998866543 211 110001
Q ss_pred HHHHHHhcCCHHHHHHHHHh--------------------------cC--C---CCc-hHHHHHHHHHHHcCCHHHHHHH
Q 044169 462 LIEAYNKCGSWEDAERVFSQ--------------------------LT--A---ADV-VSWNSMIKAYSQNGRARKAIIL 509 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~--------------------------~~--~---~~~-~~~~~li~~~~~~g~~~~A~~~ 509 (742)
-+..-..-++.++|...... +. . .+. .++..+..-... +.+.+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccc
Confidence 11111123344443332221 11 0 011 122222111110 00000000
Q ss_pred HHHHHHcCCCCCH--------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 044169 510 FEKMVVEGIRPTN--------STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFI 581 (742)
Q Consensus 510 ~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (742)
. .|...-+.|+. ..|......+.+.+..++|...+.+..+ -.+-....|.-....+...|.+++|.+.|
T Consensus 631 ~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 631 L-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred c-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 0 01111122322 1345556678888899999888887743 23344556777778899999999999998
Q ss_pred HhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 582 SNLP-IKP-TAPIWRPLFAACRCHSDLKMAEF--ISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 582 ~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
.... ..| ++++..++...+.+.|+...|.. ++..+++++|.++.+|..|+.++-+.|+.++|.+.|....+-.
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 8754 566 47888999999999999888888 9999999999999999999999999999999999998877544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-07 Score=95.31 Aligned_cols=433 Identities=13% Similarity=0.115 Sum_probs=232.1
Q ss_pred HHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHH--HHHHHH--hCC
Q 044169 192 GYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNA--LLTMYI--KCG 267 (742)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~--~~g 267 (742)
-+.++|++++|...-.++...+ +-|...+..-+-++.+.+.+++|..+.+. .+. ..+++. +=.+|| +.+
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHHcc
Confidence 3445555666666666665543 33344455555555566666666533322 110 011111 123333 466
Q ss_pred ChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCChhHHHHHHHHHH
Q 044169 268 MMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEY-TFTVALASCASLRNSHMGYMFHAQVI 346 (742)
Q Consensus 268 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~ 346 (742)
..|+|...++.....+..+...-...+.+.|++++|+++|+.+.+.+..--.. .-..++.+-+.. .. ..+.
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~-~~~q 165 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV-QLLQ 165 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-HHHH
Confidence 77777777775444444455555566677777777777777776554321111 111111111110 00 0111
Q ss_pred HhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHhc--------CC-CCChh--------hHHHHHHHHHhCCCcHHHHH
Q 044169 347 KRGMALG--DFVGTAIVDMYSGLGEIWEAKKQLKEM--------GK-SASSV--------SWNAQIAGFFRNQKTEEAIE 407 (742)
Q Consensus 347 ~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~-~~~~~--------~~~~li~~~~~~g~~~~A~~ 407 (742)
.....|+ -..+-.....+...|++.+|+++++.. .. ..+.. .---+.-.+...|+.++|..
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 1111121 111112233455677777777777665 10 11100 11224456677899999999
Q ss_pred HHHHHhHcCCCCChH----HHHHHHHHhcCCCCHH-HHHHHHHHH-----------HHhCCCCchhHHHHHHHHHHhcCC
Q 044169 408 AFSQMVRNDAACDEF----TYSSILKACSLLPSLA-TCEQIHSRI-----------VKSKFESNVHVGSSLIEAYNKCGS 471 (742)
Q Consensus 408 ~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~-~a~~i~~~~-----------~~~~~~~~~~~~~~li~~~~~~g~ 471 (742)
++...+... .+|.. .-|.++..-....-.+ .....++.. ....-.-....-++++.+|. +.
T Consensus 246 iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk 322 (652)
T KOG2376|consen 246 IYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NK 322 (652)
T ss_pred HHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh
Confidence 999988875 34432 2222332221111111 111111111 00000112223344555554 55
Q ss_pred HHHHHHHHHhcCCCC-chHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHH
Q 044169 472 WEDAERVFSQLTAAD-VVSWNSMIKAYS--QNGRARKAIILFEKMVVEGIRPTN--STFLAVLSACSHSGLVQDGQKVFE 546 (742)
Q Consensus 472 ~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~ 546 (742)
.+.+.++....+... ...+.+++.... +...+.++.+++...-+. .|.. ......+......|+++.|.+++.
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 667777777776332 334455544333 233577888888777664 4544 344555566788999999999998
Q ss_pred --------HhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHHcCCHHHH
Q 044169 547 --------SMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--------IKPT-APIWRPLFAACRCHSDLKMA 609 (742)
Q Consensus 547 --------~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~l~~~~~~~g~~~~a 609 (742)
.+.+ .+..| .+...++..|.+.++.+.|..++.+.. ..+. ...|.-+...-.++|+-++|
T Consensus 401 ~~~~~~~ss~~~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 401 LFLESWKSSILE-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHhhhhhhhhhh-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 4432 34444 456678888888888666666554432 2222 22334444445678999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 044169 610 EFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRK 648 (742)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 648 (742)
...++++++.+|+|..+...++.+|+.. +.+.|..+-+
T Consensus 478 ~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 9999999999999999999999999875 4566665543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-07 Score=91.82 Aligned_cols=306 Identities=9% Similarity=0.004 Sum_probs=209.4
Q ss_pred CCCHHHHHHHHHHHhcc--CChhHHHHHHHHHHH-hCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcC-CCCCh-hhHH
Q 044169 316 DPNEYTFTVALASCASL--RNSHMGYMFHAQVIK-RGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMG-KSASS-VSWN 390 (742)
Q Consensus 316 ~p~~~t~~~ll~~~~~~--~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~ 390 (742)
.|...+...-+.+++.. ++-..+.+.+-.+.. .-++-+.....++...|...|+.++|+..|++.. ..|+. ....
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 34444444444444433 333333333333333 3456678888899999999999999999999874 12322 2223
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044169 391 AQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCG 470 (742)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 470 (742)
...-.+.+.|+.++...+...+.... +-+...|..-+...-..++++.|..+-+..++.+ +.+...+-.-...+...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence 33345567788888877777765532 1122222222333345567777877777776654 344555555567778889
Q ss_pred CHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhc-cCcHHHHHHHH
Q 044169 471 SWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVL-SACSH-SGLVQDGQKVF 545 (742)
Q Consensus 471 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~-~g~~~~a~~~~ 545 (742)
+.++|.-.|+... +.+..+|..|+.+|...|++.+|.-+-+..... +..+..+...+. ..|.- ...-++|.+++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 9999998888765 457789999999999999999999888776654 455556666553 33332 33457888888
Q ss_pred HHhHHhcCCCCcHH-HHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 546 ESMVKEYGILPEEA-HYSCMVDLLGRAGKLEIALIFISNLP-IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 546 ~~m~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
+... .+.|+-. ....+...+.+.|+.++++.++++.. ..||....+.|...+...+.+++|...|..++.++|+|
T Consensus 428 ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 428 EKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 8764 4566643 56778889999999999999998854 67899999999999999999999999999999999977
Q ss_pred chhH
Q 044169 624 AAVY 627 (742)
Q Consensus 624 ~~~~ 627 (742)
..+.
T Consensus 505 ~~sl 508 (564)
T KOG1174|consen 505 KRTL 508 (564)
T ss_pred hHHH
Confidence 5543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.5e-11 Score=83.21 Aligned_cols=50 Identities=26% Similarity=0.503 Sum_probs=47.6
Q ss_pred CChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcC
Q 044169 384 ASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSL 433 (742)
Q Consensus 384 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 433 (742)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.7e-11 Score=82.34 Aligned_cols=50 Identities=30% Similarity=0.630 Sum_probs=46.7
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044169 485 ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSH 534 (742)
Q Consensus 485 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 534 (742)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999874
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-08 Score=109.55 Aligned_cols=244 Identities=13% Similarity=0.053 Sum_probs=175.2
Q ss_pred CcHHHHHHHHHHhHcCCCCCh-HHHHHHHHHhc---------CCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044169 401 KTEEAIEAFSQMVRNDAACDE-FTYSSILKACS---------LLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCG 470 (742)
Q Consensus 401 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 470 (742)
..++|+.+|++..+. .|+. ..+..+..++. ..++.++|...++.+.+.. +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 356888888888765 4443 34444333322 3355789999999888865 556778888888999999
Q ss_pred CHHHHHHHHHhcC--CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHH
Q 044169 471 SWEDAERVFSQLT--AA-DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS-TFLAVLSACSHSGLVQDGQKVFE 546 (742)
Q Consensus 471 ~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 546 (742)
++++|...|++.. .| +...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999876 33 4567888899999999999999999999984 66643 33344455666899999999999
Q ss_pred HhHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 547 SMVKEYGILP-EEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 547 ~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
++.+. ..| +...+..+..+|...|++++|...++++. ..|+ ...++.+...+...| +.+...++.+++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 88652 234 34457778899999999999999998864 4454 444555555667777 47777777777643222
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 624 AAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 624 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+.....+...|.-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22223367778888888888777 7776554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-06 Score=83.74 Aligned_cols=214 Identities=12% Similarity=0.042 Sum_probs=137.9
Q ss_pred CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC-------HHHHHH
Q 044169 436 SLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGR-------ARKAII 508 (742)
Q Consensus 436 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~ 508 (742)
+-+.|.+++--+.+. -|.. --.|+-.|.+.+++.+|..+..++.+..+.-|-.-.-.++..|+ ..-|.+
T Consensus 269 ngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred CCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 345566665554442 2222 23456678999999999999999876665544333333334443 344555
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 044169 509 LFEKMVVEGIRPTNS-TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIK 587 (742)
Q Consensus 509 ~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (742)
.|+-.-+.+..-|.+ --.++.+++.-..++++.+-++..+.. +=...|... -.+..+++..|.+.+|.++|-++...
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 555443444433332 234455556666788999999988843 333334443 35889999999999999999887621
Q ss_pred --CCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcC-CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 044169 588 --PTAPIWRPLFAA-CRCHSDLKMAEFISKQILELD-PD-DAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKE 658 (742)
Q Consensus 588 --p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~ 658 (742)
.|..+|.+++.- |..++..+.|..++ ++.+ |. .......+++-|.+++.+--|.+.|+.+...+..|+
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 356677666554 66788888776654 4443 32 344566678889999999999999999887665443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-08 Score=98.39 Aligned_cols=199 Identities=16% Similarity=0.150 Sum_probs=97.4
Q ss_pred hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044169 386 SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEA 465 (742)
Q Consensus 386 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 465 (742)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|...++...+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3456666677777777777777777766542 2234444555555555566666665555555442 2233344444444
Q ss_pred HHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 044169 466 YNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 466 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 544 (742)
|...|++++|.+.| ++.......|. ...+..+...+...|++++|...
T Consensus 109 ~~~~g~~~~A~~~~-------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 109 LCQQGKYEQAMQQF-------------------------------EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHHcccHHHHHHHH-------------------------------HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 44455555555444 44443211111 12333344444455555555555
Q ss_pred HHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044169 545 FESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILEL 619 (742)
Q Consensus 545 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 619 (742)
+++..+. .+.+...+..+...+...|++++|...+++.. .+.+...+..+...+...|+.+.|....+.+.+.
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 5554431 11223344445555555555555555554432 1223334444444455555555555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-08 Score=102.43 Aligned_cols=214 Identities=15% Similarity=0.083 Sum_probs=151.8
Q ss_pred CCHHHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHH
Q 044169 435 PSLATCEQIHSRIVKSK-FESN--VHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAII 508 (742)
Q Consensus 435 g~~~~a~~i~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 508 (742)
+..+.+..-+..+.... ..|+ ...|..+...|.+.|+.++|...|++.. +.+...|+.+...|...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666666432 2222 4567788888999999999999998876 3456789999999999999999999
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 044169 509 LFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIK 587 (742)
Q Consensus 509 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (742)
.|++..+ +.|+. .++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.|++....
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999997 56765 67888888899999999999999998753 344332222223445678899999999664311
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 588 PTAPIWRPLFAACRCHSDLKMAEFISKQIL-------ELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
-+...|.. .......|+...+ +.++.+. ++.|+.+.+|..++.+|.+.|++++|...|++..+.++
T Consensus 195 ~~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 12223332 2222334444333 2333333 45666778999999999999999999999999886553
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.5e-09 Score=99.94 Aligned_cols=228 Identities=11% Similarity=0.051 Sum_probs=141.7
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 044169 390 NAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKC 469 (742)
Q Consensus 390 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 469 (742)
+-|.++|.+.|.+.+|...|+.-... .|-..||..+-.+|.+..+...|..++..-.+. ++.++....-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR----- 298 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR----- 298 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH-----
Confidence 45667777777777777777766554 445555655666666666666666665555443 2233332233333
Q ss_pred CCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 044169 470 GSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMV 549 (742)
Q Consensus 470 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 549 (742)
.+-..++.++|.++|+...+. -..+......+...|.-.++++-|+.+++++.
T Consensus 299 --------------------------i~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 299 --------------------------IHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred --------------------------HHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence 444444555555555555443 11222334444444445555555555555554
Q ss_pred HhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 550 KEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP---IKPT--APIWRPLFAACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 550 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
+ .|+ .+.+.|+.+.-++.-.+++|-++.-|++.. .+|+ ..+|-.+.......||+..|.+.|+.++..+|++.
T Consensus 352 q-mG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 352 Q-MGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred H-hcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 4 233 234445555555555555555555554432 2233 55787887777888999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 625 AVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 625 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
..++.|+-+-.+.|++++|..+++...+..
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999998877644
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-06 Score=88.11 Aligned_cols=277 Identities=11% Similarity=0.028 Sum_probs=157.2
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHhc--CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHh
Q 044169 354 DFVGTAIVDMYSGLGEIWEAKKQLKEM--GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKAC 431 (742)
Q Consensus 354 ~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 431 (742)
..+.....+-+...+++.+..++++.+ ..++....+..-|.++...|+..+-..+=.+|.+.- +-...+|-++.--|
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHH
Confidence 333344444455555566655555554 113444455555556666666666666555655542 33455666666666
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHH
Q 044169 432 SLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAII 508 (742)
Q Consensus 432 ~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 508 (742)
...|..++|++.|....... +.-...|-.+...|+-.|..++|...+.... +.....+--+..-|.+.++.+.|.+
T Consensus 323 l~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 66666666666666554322 1113455556666666666666665554432 1111112223334556666777777
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CC----CCcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 044169 509 LFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEY-GI----LPEEAHYSCMVDLLGRAGKLEIALIFIS 582 (742)
Q Consensus 509 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (742)
.|.+... +-|+ +...+-+.-.....+.+.+|..+|+.....- .+ .....+++.|..+|.+.+++++|+..++
T Consensus 402 Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 402 FFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 7766665 3443 3455555555555666777777766654210 01 1133456677777777777777777777
Q ss_pred hCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 583 NLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 583 ~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
+.. .+.+..++.++...|...|+++.|...|.+++-++|++..+-..|..+.
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 643 3346667777777777777777777777777777776655555555443
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-10 Score=96.33 Aligned_cols=72 Identities=38% Similarity=0.720 Sum_probs=51.9
Q ss_pred cccEEEEcCEEEEEEeCCCCCCChHHHHHHH-HHHHHHHHHcCCCchh----------hhhhhhhhhHHHHHHHhhccCC
Q 044169 660 GCSWIEVYNKIYRFFSQNKSHSEMPKVYEKL-KQLMQQIEDIGHTDNE----------KEDRVLYHSERLAVGFGLISLP 728 (742)
Q Consensus 660 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~m~~~g~~p~~----------~~~~l~~~~~~l~~~~~~~~~~ 728 (742)
|+||+++ +.|.+|+.+||+...+...+ ......++..|+.+.+ ++..+++||||||+|||++++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~- 76 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT- 76 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce-
Confidence 7899876 99999999999873333222 1223344444443322 256899999999999999988
Q ss_pred CCCcEEEEecc-CC
Q 044169 729 AKNKFECSRTL-EY 741 (742)
Q Consensus 729 ~~~~~~~~~~~-~~ 741 (742)
+|+||+ ||
T Consensus 77 -----~vvkn~~Rv 85 (116)
T PF14432_consen 77 -----RVVKNLKRV 85 (116)
T ss_pred -----eEEecCCcc
Confidence 999999 87
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-08 Score=91.60 Aligned_cols=163 Identities=17% Similarity=0.103 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDL 567 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 567 (742)
+...|.-+|.+.|+...|.+-+++.++. .|+. .++..+...|.+.|..+.|.+.|+...+ --+-+..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHH
Confidence 4555778899999999999999999984 6766 6788899999999999999999999865 233456688999999
Q ss_pred HhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 044169 568 LGRAGKLEIALIFISNLPIKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 643 (742)
+|..|++++|...|++....|+ ..+|..+..+..+.|+.+.|...+++.++++|+.+.+...+.....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998764554 668888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 044169 644 EEQRKLMKMKEI 655 (742)
Q Consensus 644 ~~~~~~m~~~~~ 655 (742)
..+++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998877664
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-05 Score=85.59 Aligned_cols=465 Identities=14% Similarity=0.148 Sum_probs=266.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHccCCC-CCcccHHH-----HHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHH
Q 044169 155 TASLVNMYAKCGDIKSMVAVVKQMPY-LDIASCNC-----LLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAIC 228 (742)
Q Consensus 155 ~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 228 (742)
+..+.+.|-++|-.+.|++.+..+.. +-++..+. -+..|...-.++.+++.++.|...+++-|..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 56677888888888888888877653 11111111 1234555567888899999998888888887777777777
Q ss_pred ccCCChHHHHHHHHHHHHh-----------CCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC----------------
Q 044169 229 GSLSAIDEGKQLHAQTMKL-----------QYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ---------------- 281 (742)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------- 281 (742)
...=-.+.-.++|+..... ++..|+.+.-..|.+-++.|++.+.+++.++-.-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 7666667777777765542 3456777778889999999999999988765311
Q ss_pred ---C------------CcchH------HHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHH-------------HHH
Q 044169 282 ---R------------NVISW------TAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTV-------------ALA 327 (742)
Q Consensus 282 ---~------------~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-------------ll~ 327 (742)
| |.+.| -..|..|.+.=++.+.-.+.-.+.+..+ +...... +..
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC--~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC--SEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC--cHHHHHHHHHHHhccCChHHHHH
Confidence 1 11111 1234445544333333333333322211 1111111 122
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH------------------------------------
Q 044169 328 SCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIW------------------------------------ 371 (742)
Q Consensus 328 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~------------------------------------ 371 (742)
-+-+.+++..-...++..+..|. .|..++|+|...|...++-.
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqc 925 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQC 925 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCC
Confidence 23333344444444555555553 35666666655555433211
Q ss_pred ----------------------------HHHHHH-----------Hhc-----CCCCChhhHHHHHHHHHhCCCcHHHHH
Q 044169 372 ----------------------------EAKKQL-----------KEM-----GKSASSVSWNAQIAGFFRNQKTEEAIE 407 (742)
Q Consensus 372 ----------------------------~A~~~~-----------~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~ 407 (742)
--.+++ ++. +...|+..-+..+.++...+-+.+-++
T Consensus 926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen 926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence 111111 000 112223333344455555555556666
Q ss_pred HHHHHhHcCCCC--ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC-----------------------CCCchhHHHHH
Q 044169 408 AFSQMVRNDAAC--DEFTYSSILKACSLLPSLATCEQIHSRIVKSK-----------------------FESNVHVGSSL 462 (742)
Q Consensus 408 ~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~-----------------------~~~~~~~~~~l 462 (742)
+++++.-.+... +...-+.++-... ..+...+.+..+++-... +..+....+.|
T Consensus 1006 LLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VL 1084 (1666)
T KOG0985|consen 1006 LLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVL 1084 (1666)
T ss_pred HHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHH
Confidence 666554322111 1111111111111 111222222222221111 01111111111
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 044169 463 IEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQ 542 (742)
Q Consensus 463 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 542 (742)
++ .-+.++.|.+.-++.. .+..|..+..+-.+.|...+|++-|-+. -|+..|.-+++.+.+.|.|++-.
T Consensus 1085 ie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1085 IE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred HH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHH
Confidence 11 1233333333333332 3457999999999999999999877542 35567999999999999999999
Q ss_pred HHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 543 KVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 543 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
+++...++ ..-.|... +.|+-+|++.+++.+-.+++. .||..-......-|...+.++.|.-+|.
T Consensus 1154 ~yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~-------- 1218 (1666)
T KOG0985|consen 1154 KYLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS-------- 1218 (1666)
T ss_pred HHHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------
Confidence 99987755 35566655 579999999999999877764 6788888888899999999998888776
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 044169 623 DAAVYVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 623 ~~~~~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
+.+-|..|+..+...|++..|...-++
T Consensus 1219 ~vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1219 NVSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445677778888888888777654443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-07 Score=97.76 Aligned_cols=232 Identities=15% Similarity=0.158 Sum_probs=135.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc--------C-CCCChhh-HHHHHHHHHhCCCcHHHHHHHHHHhHc---CCCCC----h
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEM--------G-KSASSVS-WNAQIAGFFRNQKTEEAIEAFSQMVRN---DAACD----E 421 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~--------~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~ 421 (742)
-|..+|...|+++.|..+++.. + ..|.+.+ .+.+...|...+++++|..+|+++..- ..-++ .
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 3445555555555555554443 0 0222222 334667778888888888888876541 11111 2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCch-HHHHHHHHH
Q 044169 422 FTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVV-SWNSMIKAY 497 (742)
Q Consensus 422 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~-~~~~li~~~ 497 (742)
.+++.|..+|.+.|++++|...++.+.+ ++++.. .+.+. .++.++..+
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~~~~~~v~~~l~~~~~~~ 335 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLGASHPEVAAQLSELAAIL 335 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhccChHHHHHHHHHHHHHH
Confidence 2344444445555555555444443322 111100 11111 234455566
Q ss_pred HHcCCHHHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CC--CCc-HHHHHHH
Q 044169 498 SQNGRARKAIILFEKMVVE---GIRPTN----STFLAVLSACSHSGLVQDGQKVFESMVKEY---GI--LPE-EAHYSCM 564 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~--~p~-~~~~~~l 564 (742)
...+++++|..++++..+. -+.++. .+++.+...|.+.|++++|.++|++++... +- .+. ...++.|
T Consensus 336 ~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 336 QSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 6666777776666654432 122222 357788888888888888888888776532 11 222 3457778
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044169 565 VDLLGRAGKLEIALIFISNLP--------IKPT-APIWRPLFAACRCHSDLKMAEFISKQILE 618 (742)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 618 (742)
...|.+.+++++|.++|.+.. ..|+ ..+|..|...|.+.|+++.|+++.+.+..
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 888888888888887776542 3344 56789999999999999999999998874
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-08 Score=109.58 Aligned_cols=209 Identities=11% Similarity=0.029 Sum_probs=162.3
Q ss_pred CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCH
Q 044169 436 SLATCEQIHSRIVKSKFESNVHVGSSLIEAYN---------KCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRA 503 (742)
Q Consensus 436 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 503 (742)
+.++|...++...+.. +.+...+..+..+|. ..+++++|...+++.. +.+...|..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4578889999888753 334556666665544 2345889999999876 34566888888899999999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHH
Q 044169 504 RKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEE-AHYSCMVDLLGRAGKLEIALIFI 581 (742)
Q Consensus 504 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 581 (742)
++|...|++..+. .|+. ..+..+..++...|++++|...+++..+ ..|+. ..+..++..+...|++++|+..+
T Consensus 355 ~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 355 IVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999984 5664 5678888899999999999999999975 34443 23334455677789999999999
Q ss_pred HhCC--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 582 SNLP--IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 582 ~~~~--~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
++.. ..|+ +..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 8864 2354 4456777778889999999999999998888988888888988888888 478887777654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.8e-06 Score=87.22 Aligned_cols=440 Identities=14% Similarity=0.091 Sum_probs=237.1
Q ss_pred cCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCC-hhhHHH
Q 044169 148 VCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPN-HYTYST 223 (742)
Q Consensus 148 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ 223 (742)
+.-|..+|..|.-+..++|+++.+-+.|++... .....|+.+-..|.-.|.-..|+.+++.-....-.|+ ...+..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 455777777777777778888887777776542 2345677777777777777777777776554332343 333333
Q ss_pred HHHHHc-cCCChHHHHHHHHHHHHhC--C--CCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCC
Q 044169 224 MLAICG-SLSAIDEGKQLHAQTMKLQ--Y--LSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHG 298 (742)
Q Consensus 224 ll~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 298 (742)
.-+.|. +.+.++++..+-.+++... . ......+-.+.-+|...-. +.+ ++.- +..
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~--~~se------R~~ 458 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QAN--LKSE------RDA 458 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCC--ChHH------HHH
Confidence 334443 3456666666555555421 0 1112222222222221100 000 0000 001
Q ss_pred CcchHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 044169 299 DYEKPLRLVCLMREDG-IDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQL 377 (742)
Q Consensus 299 ~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 377 (742)
...++++.+++..+.+ -.|+...|..+ -++..++++.|.+...+..+.+-..+...|.-|.-.+...+++.+|+.+.
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 1234555555554442 22333333222 23445566666666666666555555666666666666666666666655
Q ss_pred Hhc--CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHc--CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHH--hC
Q 044169 378 KEM--GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN--DAACDEFTYSSILKACSLLPSLATCEQIHSRIVK--SK 451 (742)
Q Consensus 378 ~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~--~~ 451 (742)
+.. ....|-.....-+..-..-++.++++.....+... ...+-.. .++-....+....+.- ..
T Consensus 537 d~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~-----------~~~~g~~~~lk~~l~la~~q 605 (799)
T KOG4162|consen 537 DAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQ-----------TLDEGKLLRLKAGLHLALSQ 605 (799)
T ss_pred HHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhh-----------hhhhhhhhhhhcccccCccc
Confidence 543 10111111111122222345555555555544331 0000000 0000011111111100 00
Q ss_pred CCCchhHHHHHHHHHH---hcCCHHHHHHHHHhcCCCC------chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 044169 452 FESNVHVGSSLIEAYN---KCGSWEDAERVFSQLTAAD------VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN 522 (742)
Q Consensus 452 ~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 522 (742)
....+.++..+..... +.-..+.....+...+.|+ ...|......+.+.++.++|...+.+... +.|-.
T Consensus 606 ~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~ 683 (799)
T KOG4162|consen 606 PTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLS 683 (799)
T ss_pred ccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhh
Confidence 0111222222222111 1111111111122222233 12566677788899999999988888876 34444
Q ss_pred -HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHH--HHHhCC-CCC-CHHHHHHH
Q 044169 523 -STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKLEIALI--FISNLP-IKP-TAPIWRPL 596 (742)
Q Consensus 523 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~-~~p-~~~~~~~l 596 (742)
..|......+...|.+++|.+.|.... .+.|+ +....++..++.+.|+..-|.+ ++..+. ..| +...|..+
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 556666677888899999999998875 45554 5578899999999998777777 777664 455 68899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 044169 597 FAACRCHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 597 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
...+.+.|+.++|...|..++++++.+|.
T Consensus 761 G~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 761 GEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999876553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-05 Score=85.56 Aligned_cols=236 Identities=15% Similarity=0.144 Sum_probs=132.3
Q ss_pred CHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 044169 369 EIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIV 448 (742)
Q Consensus 369 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 448 (742)
.++.|.++-++.. .+..|..+..+-.+.|...+|++-|-+ .-|+..|.-++..+.+.|.+++-...+...+
T Consensus 1090 ~ldRA~efAe~~n---~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1090 SLDRAYEFAERCN---EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hHHHHHHHHHhhC---ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3444444444332 345688888888888888888887765 2467788888999999999988888888777
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044169 449 KSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAV 528 (742)
Q Consensus 449 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 528 (742)
+..-.|.+. +.|+-+|++.+++.+-++++. .||+.....+..-|...|.++.|.-+|... ..|..+
T Consensus 1161 kk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~L 1226 (1666)
T KOG0985|consen 1161 KKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKL 1226 (1666)
T ss_pred HhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHH
Confidence 765555543 578888888888888776643 455555555555555555555555444322 224444
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 044169 529 LSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKM 608 (742)
Q Consensus 529 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 608 (742)
...+...|.++.|...-++. .+..+|..+-.++...+.+.-|.-. -+..--...-..-++..|...|-+++
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQiC--GL~iivhadeLeeli~~Yq~rGyFeE 1297 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQIC--GLNIIVHADELEELIEYYQDRGYFEE 1297 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHHhc--CceEEEehHhHHHHHHHHHhcCcHHH
Confidence 44445555555444433222 1233444444444433333322110 00000112223344555555555555
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 044169 609 AEFISKQILELDPDDAAVYVTLSNMYAE 636 (742)
Q Consensus 609 a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 636 (742)
-+.+++..+.+..-+...|..|+-.|++
T Consensus 1298 lIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1298 LISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 5555555555554455555555555544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-05 Score=83.30 Aligned_cols=101 Identities=19% Similarity=0.168 Sum_probs=79.2
Q ss_pred CCcHHHH--HHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 044169 555 LPEEAHY--SCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTL 630 (742)
Q Consensus 555 ~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 630 (742)
+|....| -.++.-+-+.|+++.|...++... ..|. +..|..-...+...|+.+.|-..++++.+++-.|...-.--
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 4555544 466778899999999999998764 4555 33455566778889999999999999999986566666677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 631 SNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 631 ~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
+.-..+..+.++|.++..+..+.|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 7788889999999999988887664
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-07 Score=93.45 Aligned_cols=226 Identities=12% Similarity=-0.008 Sum_probs=153.2
Q ss_pred CCcHHHHHHHHHHhHcC-CCCC--hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 044169 400 QKTEEAIEAFSQMVRND-AACD--EFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAE 476 (742)
Q Consensus 400 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 476 (742)
+..+.++.-+.++.... ..|+ ...|......+...|+.+.|...|....+.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566677777766532 2222 3446666667778888888888888887764 455788889999999999999999
Q ss_pred HHHHhcC--CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 044169 477 RVFSQLT--AA-DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYG 553 (742)
Q Consensus 477 ~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 553 (742)
..|++.. .| +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|.+.|++... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 9998876 33 4568888888899999999999999999874 56553222222334456789999999977644 2
Q ss_pred CCCcHHHHHHHHHHHhhcCCH--HHHHHHHHhC-CC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-Cc
Q 044169 554 ILPEEAHYSCMVDLLGRAGKL--EIALIFISNL-PI----KP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPD-DA 624 (742)
Q Consensus 554 ~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~ 624 (742)
..|+... ..++..+ .|+. +++.+.+.+. .. .| ....|..+...+.+.|++++|+..|+++++.+|. ..
T Consensus 195 ~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 3343322 2333333 4444 3334333322 11 12 3457888999999999999999999999999974 34
Q ss_pred hhHHHHHHH
Q 044169 625 AVYVTLSNM 633 (742)
Q Consensus 625 ~~~~~l~~~ 633 (742)
..-..++..
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 444444443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-05 Score=86.46 Aligned_cols=428 Identities=13% Similarity=0.097 Sum_probs=224.5
Q ss_pred HHHHhCCChHHHHHHHHHchhCCCCCChhh-HHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC--
Q 044169 191 AGYAKNALFDQAFSFFLKLDGIDVQPNHYT-YSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCG-- 267 (742)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 267 (742)
..+...|++++|++.++.-... -+|..+ +......+.+.|+.++|..++..+++.+ +.+..-|..|..+..-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 4456778888888888664432 344433 4455577777788888888888877775 344444455555542222
Q ss_pred ---ChHHHHHHHhccCCCC--cchHHHHHHHHHhCCCc-chHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 044169 268 ---MMEDAESVFEGLVQRN--VISWTAIINGFKQHGDY-EKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMF 341 (742)
Q Consensus 268 ---~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 341 (742)
+.+....+++++...- ..+...+.-.+.....+ ..+...+..+...|+++ +|+.+-..|......+....+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 3445555555553321 11111111111111112 12334445555555543 233333333322222222222
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhH--HHHHHHHHhCCCcHHHHHHHHHHhHcCCCC
Q 044169 342 HAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSW--NAQIAGFFRNQKTEEAIEAFSQMVRNDAAC 419 (742)
Q Consensus 342 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 419 (742)
+...... ....|.+.... ..-..+|+...| .-+...|...|++++|++++++.++. .|
T Consensus 166 ~~~~~~~---------------l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tP 225 (517)
T PF12569_consen 166 VEEYVNS---------------LESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TP 225 (517)
T ss_pred HHHHHHh---------------hcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CC
Confidence 2221111 00000000000 000113444334 55567788888888888888888775 45
Q ss_pred C-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCch----------
Q 044169 420 D-EFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVV---------- 488 (742)
Q Consensus 420 ~-~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---------- 488 (742)
+ ...|..-...+-+.|++.+|.+.++...... .-|..+-+-.+..+.++|++++|.+++.....++..
T Consensus 226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc 304 (517)
T PF12569_consen 226 TLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQC 304 (517)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHH
Confidence 5 5567777788888888888888888888765 456677777788888899999998888877644411
Q ss_pred HHH--HHHHHHHHcCCHHHHHHHHHHHHHc--CC---CCC----------HHHHHHHHHHHhccCc-------HHHHHHH
Q 044169 489 SWN--SMIKAYSQNGRARKAIILFEKMVVE--GI---RPT----------NSTFLAVLSACSHSGL-------VQDGQKV 544 (742)
Q Consensus 489 ~~~--~li~~~~~~g~~~~A~~~~~~m~~~--g~---~p~----------~~t~~~ll~a~~~~g~-------~~~a~~~ 544 (742)
.|- -...+|.+.|++..|++-|....+. .+ +-| ..+|..+++..-+... ...|.++
T Consensus 305 ~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~i 384 (517)
T PF12569_consen 305 MWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRI 384 (517)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 332 2356788888888888776655432 01 122 2233333332111111 1234444
Q ss_pred HHHhHHhcCCCC-----------cHHHHHHHHHHH---hhcCCHHHHHHHHH-h----------C----C--CCCCHHHH
Q 044169 545 FESMVKEYGILP-----------EEAHYSCMVDLL---GRAGKLEIALIFIS-N----------L----P--IKPTAPIW 593 (742)
Q Consensus 545 ~~~m~~~~~~~p-----------~~~~~~~l~~~~---~~~g~~~~A~~~~~-~----------~----~--~~p~~~~~ 593 (742)
+-.+........ +..--..+..-. .+...-+++...-. + . + ..+|+..
T Consensus 385 Yl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G- 463 (517)
T PF12569_consen 385 YLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG- 463 (517)
T ss_pred HHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH-
Confidence 444422100000 000000111000 11111111111110 0 0 0 1122211
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 044169 594 RPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 594 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
..|+ ....-+++|.++++-+.+..|++..+|..--.+|.+.|++--|.+.+++
T Consensus 464 ekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 464 EKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 1121 2334578899999999999999999999999999999999998887654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-08 Score=95.27 Aligned_cols=232 Identities=13% Similarity=0.111 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc-CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHH-HHHHHhc
Q 044169 355 FVGTAIVDMYSGLGEIWEAKKQLKEM-GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYS-SILKACS 432 (742)
Q Consensus 355 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~ 432 (742)
.--+.+...|.+.|.+.+|.+.|+.. ...|-+.+|-.+-+.|.+-.+++.|+.+|.+-.+. .|..+||. .+.+.+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 33467889999999999999999876 43777889999999999999999999999987764 67777764 3445555
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Q 044169 433 LLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEK 512 (742)
Q Consensus 433 ~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 512 (742)
..++.+++.++++...+.. +.++. +..++..+|.-.++++-|+..|++
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvE-------------------------------aiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVE-------------------------------AIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-Cccce-------------------------------eeeeeeeccccCCChHHHHHHHHH
Confidence 5666666666666665543 22333 333344455555666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-
Q 044169 513 MVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE--EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP- 588 (742)
Q Consensus 513 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p- 588 (742)
+++.|+. +...|+.+.-+|...+++|-++.-|++.... --.|+ ..+|..+.....-.|++.-|...|+-.. ..|
T Consensus 350 iLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 350 ILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 6665532 3344555555555566666666665555431 12222 2345556666666666666666665443 222
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 589 TAPIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
+...++.|.-.-.+.|+.+.|..+++.+....|+
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 3556666666666667777777777766666664
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.8e-05 Score=81.07 Aligned_cols=422 Identities=13% Similarity=0.090 Sum_probs=234.7
Q ss_pred HHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhC
Q 044169 120 VIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKN 196 (742)
Q Consensus 120 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 196 (742)
|-.+++.| ..+++..+.+..+.+++ +.+....+.....-.+...|+-++|......-.. ++.++|..+.-.+-..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 44444444 45677777877777776 3344444444444456667889999888776544 4567898888888888
Q ss_pred CChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 044169 197 ALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVF 276 (742)
Q Consensus 197 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 276 (742)
.++++|+..|......+ +-|...|.-+--.-++.|+++.......+..+.
T Consensus 89 K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql----------------------------- 138 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL----------------------------- 138 (700)
T ss_pred hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-----------------------------
Confidence 88999999998887643 223333322222222233333322222222221
Q ss_pred hccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCC-CCCCHHHHHHHHH------HHhccCChhHHHHHHHHHHHhC
Q 044169 277 EGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDG-IDPNEYTFTVALA------SCASLRNSHMGYMFHAQVIKRG 349 (742)
Q Consensus 277 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------~~~~~~~~~~a~~i~~~~~~~g 349 (742)
.......|..+..++.-.|+...|..++++..+.. -.|+...|..... .....|..+.+.+........
T Consensus 139 ---~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~- 214 (700)
T KOG1156|consen 139 ---RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ- 214 (700)
T ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-
Confidence 11234556666666667777777777777665543 2355544433222 233445555555544332221
Q ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CCCCChhhHHHHH-HHHHhCCCcHHHH-HHHHHHhHcCCCCChHHHHH
Q 044169 350 MALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GKSASSVSWNAQI-AGFFRNQKTEEAI-EAFSQMVRNDAACDEFTYSS 426 (742)
Q Consensus 350 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ 426 (742)
+......-..-.+.+.+.+++++|..++..+ ...||...|.... .++.+-.+.-+++ .+|....+.- +-.......
T Consensus 215 i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rl 293 (700)
T KOG1156|consen 215 IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRL 293 (700)
T ss_pred HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhc
Confidence 1111222334456778888999999888887 2266666665544 3443344444444 5555544321 111111111
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH----HHHHhcC--------------CCCch
Q 044169 427 ILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAE----RVFSQLT--------------AADVV 488 (742)
Q Consensus 427 ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~----~~~~~~~--------------~~~~~ 488 (742)
=++......-.+....++....+.|+++- +..+...|-.-...+-.+ .+...+. .|...
T Consensus 294 plsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttl 370 (700)
T KOG1156|consen 294 PLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTL 370 (700)
T ss_pred cHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHH
Confidence 11111222233344455666666665542 333333332221111111 1111111 23444
Q ss_pred HHHH--HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHH
Q 044169 489 SWNS--MIKAYSQNGRARKAIILFEKMVVEGIRPTNS-TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMV 565 (742)
Q Consensus 489 ~~~~--li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 565 (742)
.|+. ++..|-+.|+++.|..+++.... ..|+.+ -|..=.+.+.+.|++++|..++++..+ --.||...-+.-+
T Consensus 371 lWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcA 446 (700)
T KOG1156|consen 371 LWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCA 446 (700)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHH
Confidence 5554 56778888999999999998886 477764 466666788889999999999988854 2345655554666
Q ss_pred HHHhhcCCHHHHHHHHHhCC
Q 044169 566 DLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~ 585 (742)
.-..++.+.++|.++.....
T Consensus 447 KYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 447 KYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHccccHHHHHHHHHhh
Confidence 77778888888888876554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.1e-06 Score=89.19 Aligned_cols=544 Identities=12% Similarity=-0.013 Sum_probs=259.5
Q ss_pred CcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 044169 84 YSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYA 163 (742)
Q Consensus 84 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 163 (742)
+...|+..|-+..+..+. =...|..+.+.|...-+...|.+.|....+.. ..+...+.+..+.|+
T Consensus 473 ~~~~al~ali~alrld~~--------------~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtya 537 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS--------------LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYA 537 (1238)
T ss_pred hHHHHHHHHHHHHhcccc--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhh
Confidence 356666666666655543 44567777777776667778888888777764 456667788888888
Q ss_pred hcCChhHHHHHHccCCCCCc-----ccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHH
Q 044169 164 KCGDIKSMVAVVKQMPYLDI-----ASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGK 238 (742)
Q Consensus 164 ~~g~~~~A~~~f~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 238 (742)
+..+++.|..+.-...+.+. ..|-...-.|.+.++..+|+.-|+...+.. +-|...|..+..+|.+.|++..|.
T Consensus 538 e~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~Al 616 (1238)
T KOG1127|consen 538 EESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHAL 616 (1238)
T ss_pred ccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHH
Confidence 88888888877443333211 122222334556666666666666665543 335556666667777777777777
Q ss_pred HHHHHHHHhCCCCCh-hHHHHHHHHHHhCCChHHHHHHHhccCCC----------CcchHHHHHHHHHhCCCcchHHHHH
Q 044169 239 QLHAQTMKLQYLSKT-AVSNALLTMYIKCGMMEDAESVFEGLVQR----------NVISWTAIINGFKQHGDYEKPLRLV 307 (742)
Q Consensus 239 ~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~ 307 (742)
++|..+.... |+. ...--...+-+..|.+.+|...+..+... -..++-.+...+.-.|-..+|.+.+
T Consensus 617 KvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ 694 (1238)
T KOG1127|consen 617 KVFTKASLLR--PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFF 694 (1238)
T ss_pred HhhhhhHhcC--cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 7666655432 221 11112222334556666666666554220 0112222222222223222333333
Q ss_pred HHHHH-------CCC-----------------------CCCHHHHHHHHHHHhccCCh---h---HHHHHHHHHHHhCCC
Q 044169 308 CLMRE-------DGI-----------------------DPNEYTFTVALASCASLRNS---H---MGYMFHAQVIKRGMA 351 (742)
Q Consensus 308 ~~m~~-------~g~-----------------------~p~~~t~~~ll~~~~~~~~~---~---~a~~i~~~~~~~g~~ 351 (742)
++-.+ ... .|+.....++..-.-..+.. + .|.+.+ .....+.
T Consensus 695 eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~--~~hlsl~ 772 (1238)
T KOG1127|consen 695 EKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECG--IAHLSLA 772 (1238)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHh--hHHHHHh
Confidence 22211 110 11111111111111111111 1 000000 0000011
Q ss_pred CchHHHHHHHHHHHh----CCC----HHHHHHHHHhc--CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCCh
Q 044169 352 LGDFVGTAIVDMYSG----LGE----IWEAKKQLKEM--GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDE 421 (742)
Q Consensus 352 ~~~~~~~~li~~~~~----~g~----~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 421 (742)
.+...|..|...|.+ +|. ...|...+.+. -...+...||.|.-. ...|.+.-|..-|-+-.... +-..
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~ 850 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCH 850 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccch
Confidence 112222222222222 111 12333333332 113344455544333 33334433333333322221 2234
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCCchHHHHH
Q 044169 422 FTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT--------AADVVSWNSM 493 (742)
Q Consensus 422 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l 493 (742)
.+|..+.-.|....+++.|...|....... +.+...|--........|+.-++..+|..-. -++..-|-+-
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 455555555566666777777666665432 2233333322223334566666666665411 2333444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHH--
Q 044169 494 IKAYSQNGRARKAIILFEKMVVE---------GIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYS-- 562 (742)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-- 562 (742)
..-...+|+.++-+...+++... |.+.+...|........+.+.++.|.+...+...-...+-+...|+
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva 1009 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA 1009 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 44445566555444333332211 2233335666666666666666666665555432111222333333
Q ss_pred --HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhc
Q 044169 563 --CMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDA---AVYVTLSNMYAEA 637 (742)
Q Consensus 563 --~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~ 637 (742)
.+.+.+...|.++.|..-+......-|..+...-+.. .-.|+++++.+.|++++.+--.+. .....++......
T Consensus 1010 k~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~ 1088 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLA 1088 (1238)
T ss_pred hhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhc
Confidence 3445666777787777666555444444444444433 335778888889998887633222 3344455555666
Q ss_pred CCHHHHHHHHHHHH
Q 044169 638 GLQADAEEQRKLMK 651 (742)
Q Consensus 638 g~~~~A~~~~~~m~ 651 (742)
+.-+.|...+-+..
T Consensus 1089 ~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1089 RQKNDAQFLLFEVK 1102 (1238)
T ss_pred ccchHHHHHHHHHH
Confidence 67777766544443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.5e-06 Score=87.32 Aligned_cols=47 Identities=6% Similarity=0.089 Sum_probs=26.3
Q ss_pred cccchHHHHHHHHHHHHhccCCCh-hHHHHHHHHHHhcCChhHHHHHHccC
Q 044169 129 REECLELGRRYHALITKTAVCGDQ-FVTASLVNMYAKCGDIKSMVAVVKQM 178 (742)
Q Consensus 129 ~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~~ 178 (742)
..|++..|...++.. +. .|+. ..|-.+..+....|++--|.+.|..+
T Consensus 456 d~~df~ra~afles~-~~--~~da~amw~~laelale~~nl~iaercfaai 503 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESL-EM--GPDAEAMWIRLAELALEAGNLFIAERCFAAI 503 (1636)
T ss_pred ccCchHHHHHHHHhh-cc--CccHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 345666666555433 22 2443 35666666666667666666666443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-05 Score=79.41 Aligned_cols=386 Identities=9% Similarity=0.005 Sum_probs=241.4
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhccCCCC-cchHHHHHHHHHhCCCcc-hHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044169 252 KTAVSNALLTMYIKCGMMEDAESVFEGLVQRN-VISWTAIINGFKQHGDYE-KPLRLVCLMREDGIDPNEYTFTVALASC 329 (742)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 329 (742)
+...-.-.+.+|-..++-+.|.....+.+..- ...-|.|+.-+...|.-. ++.--+.+....- +. .+ ..|.+.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec-p~---aL-~~i~~l 170 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC-PM---AL-QVIEAL 170 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc-ch---HH-HHHHHH
Confidence 44445667888888999999999998887743 334444444444443221 2221122221110 00 00 000010
Q ss_pred hccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHh--CCCHHHHHHHHHhc----CCCCChhhHHHHHHHHHhCCCcH
Q 044169 330 ASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSG--LGEIWEAKKQLKEM----GKSASSVSWNAQIAGFFRNQKTE 403 (742)
Q Consensus 330 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~ 403 (742)
.+.+ +..+..---.|-....++........+.+|+. .++-..|...+-.+ ..+.|+.....+...+...|+.+
T Consensus 171 l~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~ 249 (564)
T KOG1174|consen 171 LELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF 249 (564)
T ss_pred HHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence 0000 00000011112222233333333444444443 34444444333322 22557788889999999999999
Q ss_pred HHHHHHHHHhHcCCCCChHH----HHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 044169 404 EAIEAFSQMVRNDAACDEFT----YSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVF 479 (742)
Q Consensus 404 ~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 479 (742)
+|...|++.+.. .|+..+ |..+ +...|+.+....+...+.... ..+...|..-.......++++.|..+-
T Consensus 250 ~a~~~Fe~~~~~--dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 250 QAEDIFSSTLCA--NPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred HHHHHHHHHhhC--ChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 999999987653 344332 3333 345677777777666554421 122233333334445667888999888
Q ss_pred HhcCCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 044169 480 SQLTAAD---VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGIL 555 (742)
Q Consensus 480 ~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 555 (742)
++..+.| +..+-.-...+...|++++|.-.|+.... +.|. ...|..++..|...|...+|.-.-....+ -++
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~ 399 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQ 399 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhh
Confidence 8776443 34444444677889999999999999887 5654 47899999999999999999887777655 233
Q ss_pred CcHHHHHHHH-HHHh-hcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 044169 556 PEEAHYSCMV-DLLG-RAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLS 631 (742)
Q Consensus 556 p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 631 (742)
.+..+...+. ..+. ...--++|.+++++.. .+|+ ....+.+...|...|..+.++.++++.+...| |......|+
T Consensus 400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lg 478 (564)
T KOG1174|consen 400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLG 478 (564)
T ss_pred cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHH
Confidence 4444544442 2222 2223478999998754 6776 56677788889999999999999999999999 778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC
Q 044169 632 NMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 632 ~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+.+...+.+.+|.+.|......+
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC
Confidence 99999999999999998776543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-05 Score=80.00 Aligned_cols=429 Identities=11% Similarity=0.098 Sum_probs=220.7
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHH--
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTAS-- 157 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-- 157 (742)
.+.|++++|...-.+++..++. |...+..-+-+....+.++.|..+. ...+. ..+++.
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pd--------------d~~a~~cKvValIq~~ky~~ALk~i---kk~~~---~~~~~~~~ 82 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPD--------------DEDAIRCKVVALIQLDKYEDALKLI---KKNGA---LLVINSFF 82 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCC--------------cHhhHhhhHhhhhhhhHHHHHHHHH---Hhcch---hhhcchhh
Confidence 7889999999999999987754 6666666666777778888877433 33321 111222
Q ss_pred HHHHH--HhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCC-ChhhHHHHHHHHccCCCh
Q 044169 158 LVNMY--AKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQP-NHYTYSTMLAICGSLSAI 234 (742)
Q Consensus 158 li~~~--~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~ 234 (742)
+=.+| .+.+..++|...++.....+......-...+.+.|++++|+.+|+.+.+.+..- +...-..++.+-.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----- 157 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----- 157 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-----
Confidence 23344 478999999999996665565566666677889999999999999997765321 1111112221111
Q ss_pred HHHHHHHHHHHHhCCCCChhHHH---HHHHHHHhCCChHHHHHHHhcc--------CCCCcc----------hHHHHHHH
Q 044169 235 DEGKQLHAQTMKLQYLSKTAVSN---ALLTMYIKCGMMEDAESVFEGL--------VQRNVI----------SWTAIING 293 (742)
Q Consensus 235 ~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~--------~~~~~~----------~~~~li~~ 293 (742)
+... ..+......| ..+|. ...-.+...|++.+|+++++.. .+.|.. .--.|.-+
T Consensus 158 --~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 158 --ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred --hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 0111 1122222222 22332 2344566789999999998876 221111 12234556
Q ss_pred HHhCCCcchHHHHHHHHHHCCCCCCHHHHHHH---HHHHhccCChhH--HHHHHHHHHHh-----------CCCCchHHH
Q 044169 294 FKQHGDYEKPLRLVCLMREDGIDPNEYTFTVA---LASCASLRNSHM--GYMFHAQVIKR-----------GMALGDFVG 357 (742)
Q Consensus 294 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~--a~~i~~~~~~~-----------g~~~~~~~~ 357 (742)
+...|+-++|..+|...+... .+|....... |-+.....++-. ....++..... .-.....--
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N 312 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN 312 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999988774 3444322222 222222222222 11111111100 000001111
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHH--HhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCC
Q 044169 358 TAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGF--FRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLP 435 (742)
Q Consensus 358 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 435 (742)
+.++.+|. +..+.+.++-...+...-...+.+++... ++...+.++.+++...-+....-........+......|
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQG 390 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Confidence 23333333 34455555555553111122333333322 222245666666666544322212334444555566777
Q ss_pred CHHHHHHHHH--------HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC------CCCch----HHHHHHHHH
Q 044169 436 SLATCEQIHS--------RIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT------AADVV----SWNSMIKAY 497 (742)
Q Consensus 436 ~~~~a~~i~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~----~~~~li~~~ 497 (742)
+++.|.+++. .+.+.+ ..+.+..+++..|.+.++-+.|..++.+.. ..... .|.-+...-
T Consensus 391 n~~~A~~il~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~ 468 (652)
T KOG2376|consen 391 NPEVALEILSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFK 468 (652)
T ss_pred CHHHHHHHHHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHH
Confidence 7777777777 333333 233444566666776666666666555432 11111 122222222
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 044169 498 SQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 544 (742)
.+.|+.++|..+++++.+. .++|..+...++.+|++. +++.|..+
T Consensus 469 lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 469 LRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 3445555555555555543 233444444455554443 33444333
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.8e-06 Score=84.89 Aligned_cols=255 Identities=15% Similarity=0.144 Sum_probs=119.1
Q ss_pred HhCCCHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHH
Q 044169 365 SGLGEIWEAKKQLKEMGKSAS-SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQI 443 (742)
Q Consensus 365 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i 443 (742)
....++.+|..+++.+..+.. .--|..+...|+..|+++.|.++|-+.- .++-.|..|.+.|.++.|.++
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHH
Confidence 344445555555554431111 1123344445555555555555554321 123334445555555555444
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-
Q 044169 444 HSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN- 522 (742)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 522 (742)
-.+.. |....+..|-+-..-+-+.|++.+|++++-.+..|+. -|..|-+.|..++.+++.++- .|+.
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l 881 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHL 881 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----Chhhh
Confidence 33322 1222334444444445556666666666665555554 345566666666666555542 2222
Q ss_pred -HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCCHHHHHHH-
Q 044169 523 -STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPI----KPTAPIWRPL- 596 (742)
Q Consensus 523 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~~~~~~~l- 596 (742)
.|...+..-+...|+++.|.+.|-+.. -|.+-+++|-..+-+++|..+-+.-.. +.-...|..-
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksi 951 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSI 951 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhh
Confidence 344444555555666666666554442 134445555555666666555543220 0011122111
Q ss_pred -----HHHHHHcCCH-------------HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 597 -----FAACRCHSDL-------------KMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 597 -----~~~~~~~g~~-------------~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
+..+.++|-+ +-|..+.+...+ ..-+.+...++.-+...|++++|.+-+-+..+
T Consensus 952 ggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 952 GGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred CcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 1112233333 333333322222 12345666677777777888887666555443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-05 Score=75.17 Aligned_cols=407 Identities=13% Similarity=0.092 Sum_probs=214.7
Q ss_pred hhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC--CCcchHHH-HHHHH
Q 044169 218 HYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ--RNVISWTA-IINGF 294 (742)
Q Consensus 218 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~ 294 (742)
..-+.+++..+.+..+++.|.+++..-.+.. +.+..-.+.|..+|-+..++..|-..++++.+ |...-|.. -...+
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 3344555555555566666666665544432 22444556666677777777777777776644 22222222 13455
Q ss_pred HhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH
Q 044169 295 KQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASC--ASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWE 372 (742)
Q Consensus 295 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 372 (742)
.+.+.+.+|+++...|.+. |+...-..-+.+. -+.+++..+..+.++....| +..+.+...-...+.|+.+.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 5667777788777777542 2222211112221 22344444444444432211 22223333334456677777
Q ss_pred HHHHHHhc----CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHH-HH---HHHHHhcCCCCHHHHHHHH
Q 044169 373 AKKQLKEM----GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFT-YS---SILKACSLLPSLATCEQIH 444 (742)
Q Consensus 373 A~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~---~ll~~~~~~g~~~~a~~i~ 444 (742)
|.+-|+.. + -.....||..+..| +.|+.+.|+++..++.+.|++-.+.. .. -.+.+ ...|+ -..++
T Consensus 163 AvqkFqaAlqvsG-yqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgN---t~~lh 236 (459)
T KOG4340|consen 163 AVQKFQAALQVSG-YQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGN---TLVLH 236 (459)
T ss_pred HHHHHHHHHhhcC-CCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccc---hHHHH
Confidence 77777665 3 33345566555443 45667777777777777775432210 00 00000 00000 00000
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 044169 445 SRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA-----ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIR 519 (742)
Q Consensus 445 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 519 (742)
.. .-+..+|.-...+.+.|+.+.|.+.+..|++ .|++|...+.-.- ..+++.+..+-+.-+.+. .
T Consensus 237 ~S-------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--n 306 (459)
T KOG4340|consen 237 QS-------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--N 306 (459)
T ss_pred HH-------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--C
Confidence 00 0122334444456788999999999999983 4777766553321 245566666666666654 3
Q ss_pred C-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-CCcHHHHHHHHHHHhh-cCCHHHHHHHHHhCCCCCCHHHHHHH
Q 044169 520 P-TNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGI-LPEEAHYSCMVDLLGR-AGKLEIALIFISNLPIKPTAPIWRPL 596 (742)
Q Consensus 520 p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l 596 (742)
| ...||..++-.|++..-++.|-.++.+-.. .-+ -.+...|+ |++++.- .-..++|.+-++.+...-....-..-
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklA 384 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLA 384 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 347999999999999999999888755311 000 01222233 4444443 34566776665544200000000111
Q ss_pred HHH--HHHcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 597 FAA--CRCHSD---LKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 597 ~~~--~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
+.. -...++ ...+.+-++..+++. ..+....++.|++..++.-+.++|+...+
T Consensus 385 i~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 385 IQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 111 111121 234555566666653 23677888999999999999999987654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.9e-05 Score=74.53 Aligned_cols=308 Identities=13% Similarity=0.111 Sum_probs=166.8
Q ss_pred HHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHH---HHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 044169 257 NALLTMYIKCGMMEDAESVFEGLVQRNVISWTAII---NGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLR 333 (742)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 333 (742)
--|...+...|++.+|+.-|....+-|+..|-++. ..|...|+..-|+.=|.+.++. +||-..-..
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi--------- 110 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI--------- 110 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH---------
Confidence 34555666778888888888888888888777765 5677888888888878777763 666432211
Q ss_pred ChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHH
Q 044169 334 NSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQM 412 (742)
Q Consensus 334 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 412 (742)
++| ..+.+.|.++.|..-|+.+ ...|+..+ ...++.+. .+.+++
T Consensus 111 -------------QRg------------~vllK~Gele~A~~DF~~vl~~~~s~~~---~~eaqskl-------~~~~e~ 155 (504)
T KOG0624|consen 111 -------------QRG------------VVLLKQGELEQAEADFDQVLQHEPSNGL---VLEAQSKL-------ALIQEH 155 (504)
T ss_pred -------------Hhc------------hhhhhcccHHHHHHHHHHHHhcCCCcch---hHHHHHHH-------HhHHHH
Confidence 111 1234566666666666655 11222111 01111111 111111
Q ss_pred hHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchH
Q 044169 413 VRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVS 489 (742)
Q Consensus 413 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~ 489 (742)
. .....+..+...|+...++.....+.+.. +.|...+..-..+|...|++..|+.-+.... ..+...
T Consensus 156 ~---------~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~ 225 (504)
T KOG0624|consen 156 W---------VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEG 225 (504)
T ss_pred H---------HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHH
Confidence 1 11222333445566666776666666643 5566667777777777777777776555443 445555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----HHH---------HHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTF----LAV---------LSACSHSGLVQDGQKVFESMVKEYGILP 556 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~l---------l~a~~~~g~~~~a~~~~~~m~~~~~~~p 556 (742)
.--+-..+...|+.+.++...++-++ +.||.... ..+ +......+.|-++.+..+...+ ..|
T Consensus 226 ~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep 300 (504)
T KOG0624|consen 226 HYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEP 300 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCC
Confidence 55566667777888777777777766 56766321 111 0012223344444444444432 122
Q ss_pred c-----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 044169 557 E-----EAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 557 ~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
. ...+..+-.++...|++-+|+....+.. ..|| +.++.--..+|.-...++.|+.-|+++.+.+|+|..
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 2 1122334445555556666665555433 3333 444555555555555566666666666666655443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.8e-06 Score=77.23 Aligned_cols=191 Identities=13% Similarity=0.064 Sum_probs=90.2
Q ss_pred HhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHH
Q 044169 430 ACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKA 506 (742)
Q Consensus 430 ~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 506 (742)
.|...|+...|..-++..+++. +.+..++..+...|.+.|+.+.|.+.|++.. +.+-...|....-+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3444444444444444444432 2233444444445555555555555554433 22333444444455555555555
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044169 507 IILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 507 ~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
...|++....-.-|.. .||..+.-+..+.|+.+.|.+.|++.++. .+-.....-.+.+.....|++-.|..+++...
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 5555555543222221 34444444445555555555555555431 11122234445555555555555555555432
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 586 --IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 586 --~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
..++..+....+..-...||.+.+.+.-.++....|.+
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 23444444444555555566555555555555555543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.5e-06 Score=87.44 Aligned_cols=124 Identities=13% Similarity=0.022 Sum_probs=78.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACR 601 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 601 (742)
+..+...|...|++++|+++.++.+.. .|+ +..|..-+..|-+.|++++|.+.++... ...|-.+-+-....+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 344455566777777777777766542 343 5566667777777777777777776654 2234444445555666
Q ss_pred HcCCHHHHHHHHHHHHhcC--CC-------CchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 602 CHSDLKMAEFISKQILELD--PD-------DAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~--p~-------~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
+.|+.++|++.+......+ |. ........+.+|.+.|++..|.+.|..+.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7777777777777665543 21 12334567788888888888887666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.4e-06 Score=83.55 Aligned_cols=216 Identities=15% Similarity=0.100 Sum_probs=136.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCch---HHH-------HHH
Q 044169 425 SSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVV---SWN-------SMI 494 (742)
Q Consensus 425 ~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~-------~li 494 (742)
..+.++..+..+++.+.+-+....+.. .+..-++....+|...|.+.+....-....+.... -|+ .+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345555566666777777777666654 45555566666777777766665554443322111 122 233
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHH-HHHHHHHHhhcCC
Q 044169 495 KAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAH-YSCMVDLLGRAGK 573 (742)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~l~~~~~~~g~ 573 (742)
.+|.+.++++.|+..|.+.+.....||..+ +....+++....... .-+.|+... ...=...+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~---a~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERK---AYINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHH---HhhChhHHHHHHHHHHHHHhccC
Confidence 466667788888888888766544444321 122333343333332 123343321 1222566778888
Q ss_pred HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 574 LEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 574 ~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
+..|+..+.++. ..| |...|.....+|.+.|++..|..-.+..++++|+....|..-+.++....+|++|.+.|.+..
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887754 334 577778888888888888888888888888888888888888888888888888888887766
Q ss_pred hCC
Q 044169 652 MKE 654 (742)
Q Consensus 652 ~~~ 654 (742)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00023 Score=76.09 Aligned_cols=82 Identities=9% Similarity=0.073 Sum_probs=48.5
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 044169 285 ISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMY 364 (742)
Q Consensus 285 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 364 (742)
..|.-....+-..|+.+.|+.+|...++ |-++++..+-.|+.++|.+|-++ ..|....-.|.++|
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMY 977 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHh
Confidence 3344444444556667777776666543 33455555666777766666544 22444455566777
Q ss_pred HhCCCHHHHHHHHHhcC
Q 044169 365 SGLGEIWEAKKQLKEMG 381 (742)
Q Consensus 365 ~~~g~~~~A~~~~~~~~ 381 (742)
...|++.+|..+|.+..
T Consensus 978 En~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 77777777777776653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.7e-05 Score=84.90 Aligned_cols=552 Identities=11% Similarity=0.034 Sum_probs=297.6
Q ss_pred cccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHH
Q 044169 61 LSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYH 140 (742)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 140 (742)
..|. .|...| ....+-.+|...|++..+.+.. +......+...+++..+++.|..+.
T Consensus 493 paf~-~LG~iY--------rd~~Dm~RA~kCf~KAFeLDat--------------daeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 493 PAFA-FLGQIY--------RDSDDMKRAKKCFDKAFELDAT--------------DAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHH-HHHHHH--------HHHHHHHHHHHHHHHHhcCCch--------------hhhhHHHHHHHhhccccHHHHHHHH
Confidence 4678 888888 6666888999999999887765 7888889999999999999998883
Q ss_pred HHHHHhc-cCCChhHHHHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCC
Q 044169 141 ALITKTA-VCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQP 216 (742)
Q Consensus 141 ~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 216 (742)
-..-+.. ...-..-|-.+.-.|.+.++...|..-|+...+ .|..+|..+..+|...|++..|+++|.+.... .|
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 2222111 000111233345567778899999998887653 47788999999999999999999999888653 45
Q ss_pred ChhhHHHHH--HHHccCCChHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhCCChHHHHHHHhccC--------
Q 044169 217 NHYTYSTML--AICGSLSAIDEGKQLHAQTMKLQ------YLSKTAVSNALLTMYIKCGMMEDAESVFEGLV-------- 280 (742)
Q Consensus 217 ~~~t~~~ll--~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------- 280 (742)
+. +|.... ..-+..|.+.++...+...+... ...-..++-.+...+.-.|-...|.+.|+.-.
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 43 222222 23356788999888887766531 11111222222222222343344444443321
Q ss_pred ---CCCcchHHHHHHHHHhCCCcc--h----HHHHH-HHHHHCCCCCC--------------------HHHHHHHHHHHh
Q 044169 281 ---QRNVISWTAIINGFKQHGDYE--K----PLRLV-CLMREDGIDPN--------------------EYTFTVALASCA 330 (742)
Q Consensus 281 ---~~~~~~~~~li~~~~~~g~~~--~----A~~~~-~~m~~~g~~p~--------------------~~t~~~ll~~~~ 330 (742)
..+...|-.+-+++.-.-..+ . .+.+| .+....+.-|+ ..++..+...+.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 123333333332221111000 0 01111 11222222222 222222222211
Q ss_pred c-------cCC-hhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc--CCCCChhhHHHHHHHHHhCC
Q 044169 331 S-------LRN-SHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM--GKSASSVSWNAQIAGFFRNQ 400 (742)
Q Consensus 331 ~-------~~~-~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g 400 (742)
+ .+. ...|...+...++.. .-+..+|++|--. ...|.+.-|...|-+- ..+.+..+|..+.-.+.++.
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 1 111 112333333333321 2234455555433 5567777777666543 22566778888888889999
Q ss_pred CcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH----HhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 044169 401 KTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIV----KSKFESNVHVGSSLIEAYNKCGSWEDAE 476 (742)
Q Consensus 401 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~ 476 (742)
+++-|...|...+... +.|...|..........|+.-+...+|..-- ..|-.++...+-+........|+.++-.
T Consensus 865 d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred cHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 9999999998877643 3345555554444455666666666665521 2233455555555555556666666555
Q ss_pred HHHHhcC-------------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHH----HHHHhccCcH
Q 044169 477 RVFSQLT-------------AADVVSWNSMIKAYSQNGRARKAIILFEKMVVE-GIRPTNSTFLAV----LSACSHSGLV 538 (742)
Q Consensus 477 ~~~~~~~-------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~l----l~a~~~~g~~ 538 (742)
..-+.+. +.+...|.+.....-+.+.++.|.++..+...- ..+-|..+|+.+ .+.+...|.+
T Consensus 944 ~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgef 1023 (1238)
T KOG1127|consen 944 NTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEF 1023 (1238)
T ss_pred HHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcch
Confidence 4444443 123346666666666666677776666654321 013333444432 2233444555
Q ss_pred HHHHHHHHHhHHhcCCCCcHHHHHHHHH--HHhhcCCHHHHHHHHHhCC----CCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 044169 539 QDGQKVFESMVKEYGILPEEAHYSCMVD--LLGRAGKLEIALIFISNLP----IKPT-APIWRPLFAACRCHSDLKMAEF 611 (742)
Q Consensus 539 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~a~~ 611 (742)
+.|..-+.. .|-..--..+.. ...-.|+++++.+.|++.. ...| +.....++......+..+.|..
T Consensus 1024 e~A~~a~~~-------~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~ 1096 (1238)
T KOG1127|consen 1024 ESAKKASWK-------EWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQF 1096 (1238)
T ss_pred hhHhhhhcc-------cchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHH
Confidence 544433222 111111011111 1133677777777777753 2233 2333444444556666677777
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 044169 612 ISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRK 648 (742)
Q Consensus 612 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 648 (742)
.+-+...+.|.+......|..++.-..+-....-+.+
T Consensus 1097 lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaile 1133 (1238)
T KOG1127|consen 1097 LLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILE 1133 (1238)
T ss_pred HHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHH
Confidence 7777777766566666666655544444333333333
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.3e-07 Score=88.55 Aligned_cols=251 Identities=12% Similarity=0.038 Sum_probs=151.2
Q ss_pred HHhCCCHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHH
Q 044169 364 YSGLGEIWEAKKQLKEMGKSA--SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCE 441 (742)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 441 (742)
+.-.|.+..+..-.+.-+..+ +......+.+++...|+++.++ .++.... .|....+..+...+....+.+.+.
T Consensus 11 ~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 11 QFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 344566666665444211112 2233445667777777766544 3333332 566666655555555544444444
Q ss_pred HHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 044169 442 QIHSRIVKSKFE-SNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRP 520 (742)
Q Consensus 442 ~i~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 520 (742)
.-++........ .+..+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +..
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~e 162 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDE 162 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCC
Confidence 444333222222 23333344445677789999998888765 4566666778889999999999999999986 344
Q ss_pred CHHHHHHHHHHHh----ccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHH
Q 044169 521 TNSTFLAVLSACS----HSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWR 594 (742)
Q Consensus 521 ~~~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~ 594 (742)
|. +...+..++. ..+.+++|..+|+++.. ...+++.+.+.+..+....|++++|.+++.+.. ..| ++.++.
T Consensus 163 D~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 163 DS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp CH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred cH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 44 3334444433 23468889999998854 455777788888888888888888888887643 334 456666
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHhcCCCCch
Q 044169 595 PLFAACRCHSDL-KMAEFISKQILELDPDDAA 625 (742)
Q Consensus 595 ~l~~~~~~~g~~-~~a~~~~~~~~~~~p~~~~ 625 (742)
.++-.....|+. +.+.+...++....|+++.
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 677766777766 6677788887778886553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.8e-05 Score=80.50 Aligned_cols=260 Identities=10% Similarity=0.012 Sum_probs=151.1
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHH---HHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 044169 393 IAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSS---ILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKC 469 (742)
Q Consensus 393 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 469 (742)
...+...|++++|.+.+++..+.. +.|...+.. ........+..+.+.+.+... ....+........+...+...
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHc
Confidence 345566788888888888777653 222323321 111122234445555544431 111122234445566677888
Q ss_pred CCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccCcHHHHHH
Q 044169 470 GSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGI-RPTN--STFLAVLSACSHSGLVQDGQK 543 (742)
Q Consensus 470 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~ 543 (742)
|++++|.+.+++.. +.+...+..+...|...|++++|...+++.....- .|+. ..|..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 88888888888776 33455677778888888888888888888776421 1232 235566777888888888888
Q ss_pred HHHHhHHhcCCCCcHHHH-H--HHHHHHhhcCCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044169 544 VFESMVKEYGILPEEAHY-S--CMVDLLGRAGKLEIALIF---ISN---L-PIKPTAPIWRPLFAACRCHSDLKMAEFIS 613 (742)
Q Consensus 544 ~~~~m~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~---~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 613 (742)
++++........+..... + .++..+...|..+.+... ... . ..............++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 888874321111222111 1 223333444432222222 111 1 11111222234555677888888898888
Q ss_pred HHHHhcC-C--------CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 614 KQILELD-P--------DDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 614 ~~~~~~~-p--------~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+.+.... . .........+.++...|++++|.+.+.......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8876532 1 134456777888999999999999998877544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-07 Score=94.77 Aligned_cols=217 Identities=14% Similarity=0.120 Sum_probs=158.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHH
Q 044169 433 LLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIIL 509 (742)
Q Consensus 433 ~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 509 (742)
+.|++.+|.-.|+..++.. +-+...|-.|.......++-..|+..+.+.. ..|....-.|.-.|...|.-.+|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4455666666666555543 4455666666666666666666666666655 23445666666677777777788887
Q ss_pred HHHHHHcCCCCCHHHHHH-----H---HHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 044169 510 FEKMVVEGIRPTNSTFLA-----V---LSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFI 581 (742)
Q Consensus 510 ~~~m~~~g~~p~~~t~~~-----l---l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (742)
++.-+.. .|...-... - -..+.....+....++|-++....+.++|..+..+|.-.|--.|+++.|++.|
T Consensus 376 L~~Wi~~--~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRN--KPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHh--CccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 7776543 111100000 0 01223333455667777777776677789999999999999999999999999
Q ss_pred HhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 582 SNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 582 ~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
+... .+| |...||-|....+.....++|+..|.+++++.|.-..+...|+-.|...|.|+||.+.|=....
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9864 566 6888999999999999999999999999999999999999999999999999999998766553
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.0013 Score=78.50 Aligned_cols=259 Identities=12% Similarity=0.028 Sum_probs=138.7
Q ss_pred HHhCCCcHHHHHHHHHHhHcCCCCCh----HHHHHHHHHhcCCCCHHHHHHHHHHHHHh----CCC-CchhHHHHHHHHH
Q 044169 396 FFRNQKTEEAIEAFSQMVRNDAACDE----FTYSSILKACSLLPSLATCEQIHSRIVKS----KFE-SNVHVGSSLIEAY 466 (742)
Q Consensus 396 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~-~~~~~~~~li~~~ 466 (742)
+...|++++|...+++....-...+. ...+.+...+...|+++.|...+...... |-. ........+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 33455555555555554432111111 12233334445566666666655554432 100 0112334445556
Q ss_pred HhcCCHHHHHHHHHhcCC-------CC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHH
Q 044169 467 NKCGSWEDAERVFSQLTA-------AD----VVSWNSMIKAYSQNGRARKAIILFEKMVVE--GIRPT--NSTFLAVLSA 531 (742)
Q Consensus 467 ~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a 531 (742)
...|++++|...+++... ++ ...+..+...+...|++++|...+++.... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 666777777666654431 11 112334445566667888877777766542 11122 1234444556
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCcHHHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHH
Q 044169 532 CSHSGLVQDGQKVFESMVKEYGILPEEAHY-----SCMVDLLGRAGKLEIALIFISNLPIK--PTA----PIWRPLFAAC 600 (742)
Q Consensus 532 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~ 600 (742)
....|++++|.+.++..............+ ...+..+...|+.+.|...+...... ... ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 667788888887777764321111111111 11224445578888888887665411 111 1134455567
Q ss_pred HHcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 601 RCHSDLKMAEFISKQILELD------PDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 601 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
...|+.++|...++++++.. +....++..++.+|...|+.++|...+.+..+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77888888888888887642 1223467778888888888888888888877543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.68 E-value=3e-07 Score=91.29 Aligned_cols=245 Identities=15% Similarity=0.072 Sum_probs=163.1
Q ss_pred HHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 044169 394 AGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWE 473 (742)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 473 (742)
+-+.-.|.+..++.-.+ .....-..+..+...+.+++...|+.+.+. ..+.+.. .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455788888886555 222222223445556777888888866433 3343333 666666655555554445666
Q ss_pred HHHHHHHhcC-CCC---chHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 044169 474 DAERVFSQLT-AAD---VVSWNS-MIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESM 548 (742)
Q Consensus 474 ~A~~~~~~~~-~~~---~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 548 (742)
.+..-+++.. .+. -.++.. ....+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665544 221 112222 234455689999999988642 44566777788999999999999999999
Q ss_pred HHhcCCCCcHHHHHHHHHHH----hhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 549 VKEYGILPEEAHYSCMVDLL----GRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 549 ~~~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
.+ +..|. +...++.++ .-.+++.+|..+|+++. ..+++.+.+.+..++...|++++|+.+++++++.+|+
T Consensus 158 ~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 53 33443 333444433 33447999999999975 3467888889999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCH-HHHHHHHHHHHhC
Q 044169 623 DAAVYVTLSNMYAEAGLQ-ADAEEQRKLMKMK 653 (742)
Q Consensus 623 ~~~~~~~l~~~y~~~g~~-~~A~~~~~~m~~~ 653 (742)
++.+...++-+....|+. +.+.+++.+++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999998 6677888887753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.5e-05 Score=81.26 Aligned_cols=259 Identities=11% Similarity=0.055 Sum_probs=157.7
Q ss_pred CChhHHHHHH--HHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhC-C--------CCCCh
Q 044169 150 GDQFVTASLV--NMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGI-D--------VQPNH 218 (742)
Q Consensus 150 ~~~~~~~~li--~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~--------~~p~~ 218 (742)
-|..+..+++ +.|..-|+.+.|.+-.+-+. .-..|..|.+.|.+.++.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 4566666665 34667788888877766554 3456888888888888777777776666431 1 1122
Q ss_pred hhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCC-CcchHHHHHHHHHhC
Q 044169 219 YTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQR-NVISWTAIINGFKQH 297 (742)
Q Consensus 219 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~ 297 (742)
.+=.-+.-.....|.+++|+.+|.+..+.. .|=..|-..|.+++|.++-+.-..- =..+|.....-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 222223333456788999999998887653 3445677789999998876543221 123566666666677
Q ss_pred CCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Q 044169 298 GDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQL 377 (742)
Q Consensus 298 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 377 (742)
++.+.|++.|++-.. |--..+..|. .++...++..+. ..|...|.-....+...|+++.|+.++
T Consensus 872 ~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred ccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHH
Confidence 888888888876421 1111111111 011111111111 224455555555566678888888887
Q ss_pred HhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 044169 378 KEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIV 448 (742)
Q Consensus 378 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 448 (742)
.... -|-++++..|-.|+.++|-++-++ .-|....-.+.+.|-..|++.+|..+|.+..
T Consensus 936 ~~A~------D~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 936 SSAK------DYFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHhh------hhhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7754 466677777778888888777665 2355555567777777777777777776554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.4e-06 Score=93.72 Aligned_cols=217 Identities=12% Similarity=0.118 Sum_probs=177.7
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-H
Q 044169 453 ESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA--------ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-S 523 (742)
Q Consensus 453 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 523 (742)
+.+...|-..+......+++++|++++++... .-.-.|.+++..-...|.-+...++|+++.+. -|. .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 44567777788888889999999999988762 12347888888888889889999999999873 344 5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC---CHHHHHHHHHH
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP---TAPIWRPLFAA 599 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~ 599 (742)
.|..|...|.+.+.+++|.++++.|.+.++ .....|..+++.+.+..+-+.|..++.+.. .-| ......-.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 688999999999999999999999999766 677789999999999999999999998753 223 34455556666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccEEEEcCEEEEEEeCCCC
Q 044169 600 CRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKS 679 (742)
Q Consensus 600 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 679 (742)
-.++||.+++..+|+..+.-.|.-...|..++++-.+.|+.+.++.+|+++...++.+
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~---------------------- 1667 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI---------------------- 1667 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh----------------------
Confidence 7899999999999999999999999999999999999999999999999999877632
Q ss_pred CCChHHHHHHHHHHHHHH
Q 044169 680 HSEMPKVYEKLKQLMQQI 697 (742)
Q Consensus 680 ~~~~~~~~~~~~~l~~~m 697 (742)
.++...|.++.+..+..
T Consensus 1668 -kkmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1668 -KKMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred -hHhHHHHHHHHHHHHhc
Confidence 25666677766665553
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.2e-05 Score=77.57 Aligned_cols=235 Identities=17% Similarity=0.132 Sum_probs=147.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCC------chhHHHHHHHH
Q 044169 392 QIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFES------NVHVGSSLIEA 465 (742)
Q Consensus 392 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~------~~~~~~~li~~ 465 (742)
+....-+..+++.|++.+....+.. -+..-++....++...|....+...-....+.|... =...+..+..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 4444445555566666655555433 223333334444555555544444433333332110 01112224457
Q ss_pred HHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHH
Q 044169 466 YNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS-TFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 466 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~ 544 (742)
|.+.++++.|...|.+...+-.. -....+....+++++..+...- +.|... -...-...+.+.|++..|+..
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 77888999999999875421111 1122333455666666555443 455542 233336678889999999999
Q ss_pred HHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 545 FESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 545 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
|.++++. -+.|...|+...-+|.+.|.+..|++=.+... ..|+ ...|.--..++....+++.|.+.|++.++.+|+
T Consensus 381 YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 381 YTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 9999873 36677899999999999999999988766543 3444 444555555666777899999999999999999
Q ss_pred CchhHHHHHHHHHhc
Q 044169 623 DAAVYVTLSNMYAEA 637 (742)
Q Consensus 623 ~~~~~~~l~~~y~~~ 637 (742)
+......+.+++...
T Consensus 459 ~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 459 NAEAIDGYRRCVEAQ 473 (539)
T ss_pred hHHHHHHHHHHHHHh
Confidence 888888887777654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.1e-06 Score=81.25 Aligned_cols=181 Identities=13% Similarity=0.117 Sum_probs=121.5
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-c---hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----
Q 044169 454 SNVHVGSSLIEAYNKCGSWEDAERVFSQLTA--AD-V---VSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS---- 523 (742)
Q Consensus 454 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 523 (742)
.....+..+...|.+.|++++|...|+++.. |+ . ..|..+..+|.+.|++++|+..++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 3455666777778888888888888887652 22 2 35667778888888888888888888774 44321
Q ss_pred HHHHHHHHHhcc--------CcHHHHHHHHHHhHHhcCCCCcHH-HHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 044169 524 TFLAVLSACSHS--------GLVQDGQKVFESMVKEYGILPEEA-HYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWR 594 (742)
Q Consensus 524 t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 594 (742)
++..+..++... |++++|.+.++.+.+. .|+.. .+..+... +...... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHH
Confidence 344444555543 6777888888877653 23322 22211111 1111100 00112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 595 PLFAACRCHSDLKMAEFISKQILELDPDD---AAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 595 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
.+...+...|+++.|...++++++..|++ +..+..++.+|.+.|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45566889999999999999999987754 4789999999999999999999998887543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.8e-06 Score=78.74 Aligned_cols=148 Identities=9% Similarity=0.083 Sum_probs=113.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCC
Q 044169 494 IKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGK 573 (742)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 573 (742)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3467778887776544432221 11 122235667777777777765 345677789999999999999
Q ss_pred HHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHHcCC--HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 044169 574 LEIALIFISNLP-IKP-TAPIWRPLFAA-CRCHSD--LKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRK 648 (742)
Q Consensus 574 ~~~A~~~~~~~~-~~p-~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 648 (742)
+++|...|++.. ..| +...+..+..+ +...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998764 445 67778777776 467776 5999999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 044169 649 LMKMKEI 655 (742)
Q Consensus 649 ~m~~~~~ 655 (742)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9987554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-06 Score=74.12 Aligned_cols=119 Identities=13% Similarity=0.067 Sum_probs=98.5
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 557 EEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
+....-.+...+...|++++|.++|+-.. ..| +..-|..|...|...|++++|+..|.++..++|+||.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34456667778889999999999998754 455 6778999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCcccEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 044169 635 AEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIE 698 (742)
Q Consensus 635 ~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 698 (742)
...|+.+.|++.|+...... ..+|+..++.++.......+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999999876422 145666677766666665554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.1e-06 Score=73.63 Aligned_cols=94 Identities=15% Similarity=-0.034 Sum_probs=61.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
+..+...+...|++++|...|+... ..| +...|..+...+...|++++|...++++++++|+++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3445566666666666666666543 233 56666666666777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhCC
Q 044169 639 LQADAEEQRKLMKMKE 654 (742)
Q Consensus 639 ~~~~A~~~~~~m~~~~ 654 (742)
++++|.+.++...+..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 7777777776665433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00037 Score=73.00 Aligned_cols=193 Identities=9% Similarity=0.061 Sum_probs=97.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCc--hHHHHHHHHHH
Q 044169 426 SILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA-----ADV--VSWNSMIKAYS 498 (742)
Q Consensus 426 ~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~li~~~~ 498 (742)
.+...+...|++++|...++...+.. +.+...+..+..+|...|++++|...+++... ++. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 33445555666666666666665543 33345556666667777777777777666542 111 13445666677
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCH-HHH-H--HHHHHHhccCcHHHHHHH--HHHhHHhcCC-CCcHHHHHHHHHHHhhc
Q 044169 499 QNGRARKAIILFEKMVVEGIRPTN-STF-L--AVLSACSHSGLVQDGQKV--FESMVKEYGI-LPEEAHYSCMVDLLGRA 571 (742)
Q Consensus 499 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~-~--~ll~a~~~~g~~~~a~~~--~~~m~~~~~~-~p~~~~~~~l~~~~~~~ 571 (742)
..|++++|..++++.......+.. ... . .++.-+...|..+.+.+. .......... ..........+.++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 777777777777776532211111 111 1 222222333322222221 1111010000 01111222455667778
Q ss_pred CCHHHHHHHHHhCC--CCC---C----HHHHHHHH--HHHHHcCCHHHHHHHHHHHHhc
Q 044169 572 GKLEIALIFISNLP--IKP---T----APIWRPLF--AACRCHSDLKMAEFISKQILEL 619 (742)
Q Consensus 572 g~~~~A~~~~~~~~--~~p---~----~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~ 619 (742)
|+.++|..+++.+. ... . ..+...++ -++...|+.+.|.+.+..++.+
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888887776653 111 1 01112222 2356788888888888887764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.8e-05 Score=71.10 Aligned_cols=339 Identities=14% Similarity=0.089 Sum_probs=182.4
Q ss_pred HHHHHHHHhcCChhHHHHHHccCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHH-HHHHccC
Q 044169 156 ASLVNMYAKCGDIKSMVAVVKQMPYL---DIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTM-LAICGSL 231 (742)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-l~~~~~~ 231 (742)
++.+..+.+..++.+|.+++..-.++ +....+.|..+|-...++..|-+.|+.+-.. .|...-|... .+.+-+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 34444445556666666665544332 3344555666666666677777776666543 3444333321 2333445
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHH--HHHhCCChHHHHHHHhccCC-CCcchHHHHHHHHHhCCCcchHHHHHH
Q 044169 232 SAIDEGKQLHAQTMKLQYLSKTAVSNALLT--MYIKCGMMEDAESVFEGLVQ-RNVISWTAIINGFKQHGDYEKPLRLVC 308 (742)
Q Consensus 232 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 308 (742)
+.+..|.++...|... ++...-..-+. ..-..+++..+..+.++.+. .+..+.+...-...+.|+++.|++-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 5566666666555421 11111111111 12345777777777777773 455555555555667788888888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcC------C
Q 044169 309 LMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMG------K 382 (742)
Q Consensus 309 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~ 382 (742)
...+-|---....|+..+ +..+.|+.+.|....++++++|+...+.... |..-+..+ .+.++ .
T Consensus 169 aAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgI---------Gm~tegiD-vrsvgNt~~lh~ 237 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGI---------GMTTEGID-VRSVGNTLVLHQ 237 (459)
T ss_pred HHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCc---------cceeccCc-hhcccchHHHHH
Confidence 776653333345666544 3445677788888888888777542221110 00000000 00000 0
Q ss_pred CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHc-CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHH
Q 044169 383 SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN-DAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSS 461 (742)
Q Consensus 383 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~ 461 (742)
..-+..+|.-...+.+.|+++.|.+.+-.|.-. ....|++|...+.-.- ..+++..+.+-+..+...+ +-...++..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHH
Confidence 001223454555567778888888877777432 2345777776654322 2334555555555555553 345678888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC-----CchHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 044169 462 LIEAYNKCGSWEDAERVFSQLTAA-----DVVSWNSMIKAYS-QNGRARKAIILFEKM 513 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~-~~g~~~~A~~~~~~m 513 (742)
++-.|||..-++-|.+++.+-... +...|+. +.++. ..-.+++|.+-++.+
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHH
Confidence 888999999999998888765432 2233332 33332 234556665555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-06 Score=75.25 Aligned_cols=123 Identities=10% Similarity=-0.024 Sum_probs=97.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C
Q 044169 508 ILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-I 586 (742)
Q Consensus 508 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 586 (742)
.++++..+ +.|+. +.....++...|++++|...|+.... --+.+...|..+..++.+.|++++|+..|++.. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45556555 35654 44566777888999999999888864 234466778888899999999999999998764 3
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 044169 587 KP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAE 636 (742)
Q Consensus 587 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 636 (742)
.| +...|..+..++...|++++|+..+++++++.|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 44 678888899999999999999999999999999999999888776543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.3e-07 Score=58.36 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=27.7
Q ss_pred ccCCChhHHHHHHHHHHhcCChhHHHHHHccCC
Q 044169 147 AVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMP 179 (742)
Q Consensus 147 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 179 (742)
|+.||..+||.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00042 Score=82.56 Aligned_cols=324 Identities=10% Similarity=0.049 Sum_probs=182.0
Q ss_pred HHHhCCChHHHHHHHhccCC----CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCC--C----CCCHH--HHHHHHHHH
Q 044169 262 MYIKCGMMEDAESVFEGLVQ----RNVISWTAIINGFKQHGDYEKPLRLVCLMREDG--I----DPNEY--TFTVALASC 329 (742)
Q Consensus 262 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~--t~~~ll~~~ 329 (742)
.....|+++.+...++.++. .+..........+...|+++++..++......- . .+... ....+-..+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456777777777766632 223333334445556777788777777664321 0 11111 111222334
Q ss_pred hccCChhHHHHHHHHHHHhCCCCc----hHHHHHHHHHHHhCCCHHHHHHHHHhcC----C--CCC--hhhHHHHHHHHH
Q 044169 330 ASLRNSHMGYMFHAQVIKRGMALG----DFVGTAIVDMYSGLGEIWEAKKQLKEMG----K--SAS--SVSWNAQIAGFF 397 (742)
Q Consensus 330 ~~~~~~~~a~~i~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~----~--~~~--~~~~~~li~~~~ 397 (742)
...|+++.+...++...+.--..+ ....+.+...+...|++++|...+++.. . .+. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 566788888877777665311111 1233455566777888888877776651 0 111 223445566677
Q ss_pred hCCCcHHHHHHHHHHhH----cCCC--C-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--CCCC--chhHHHHHHHHH
Q 044169 398 RNQKTEEAIEAFSQMVR----NDAA--C-DEFTYSSILKACSLLPSLATCEQIHSRIVKS--KFES--NVHVGSSLIEAY 466 (742)
Q Consensus 398 ~~g~~~~A~~~~~~m~~----~g~~--p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~--~~~~--~~~~~~~li~~~ 466 (742)
..|++++|...+++... .+.. + ....+..+...+...|++++|...+...... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 78888888887776544 2211 1 2233444455566678888888777765442 1111 233444566677
Q ss_pred HhcCCHHHHHHHHHhcC----CC-CchHHHH-----HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHh
Q 044169 467 NKCGSWEDAERVFSQLT----AA-DVVSWNS-----MIKAYSQNGRARKAIILFEKMVVEGIRPTN---STFLAVLSACS 533 (742)
Q Consensus 467 ~~~g~~~~A~~~~~~~~----~~-~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~ 533 (742)
...|+.++|.+.+++.. .. ....+.. .+..+...|+.+.|..++............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 78888888887776653 11 1111111 123445577888888877665432111111 11345556777
Q ss_pred ccCcHHHHHHHHHHhHHh---cCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044169 534 HSGLVQDGQKVFESMVKE---YGILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 534 ~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
..|++++|...+++.... .+..++ ..+...+..++.+.|+.++|...+.+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 788888888888776542 233332 2356667778888888888888877653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.5e-05 Score=74.59 Aligned_cols=211 Identities=11% Similarity=0.105 Sum_probs=125.7
Q ss_pred CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCH--HHHHHH
Q 044169 436 SLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCG-SWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRA--RKAIIL 509 (742)
Q Consensus 436 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~ 509 (742)
..++|......+++.+ +-+..+|+.-..++.+.| +++++...++++. ..+..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3344444444444332 222233433333444444 4566666666554 23334555544444445542 566777
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc---CCH----HHHHHHH
Q 044169 510 FEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA---GKL----EIALIFI 581 (742)
Q Consensus 510 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~ 581 (742)
++++.+. .|. ...|.....++...|+++++++.++++++. -.-+...|+....++.+. |+. ++++++.
T Consensus 131 ~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 131 TRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 7777763 443 356666666677777777777777777652 223444555554444443 222 4566666
Q ss_pred Hh-CCCCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-----------------
Q 044169 582 SN-LPIKP-TAPIWRPLFAACRCH----SDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG----------------- 638 (742)
Q Consensus 582 ~~-~~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g----------------- 638 (742)
.+ +...| |...|+.+...+... +...+|...+.++++.+|+++.++..|+++|++..
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEEL 286 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccc
Confidence 44 33445 677888888888773 34567889999999999999999999999998743
Q ss_pred -CHHHHHHHHHHHH
Q 044169 639 -LQADAEEQRKLMK 651 (742)
Q Consensus 639 -~~~~A~~~~~~m~ 651 (742)
..++|.++++.+.
T Consensus 287 ~~~~~a~~~~~~l~ 300 (320)
T PLN02789 287 SDSTLAQAVCSELE 300 (320)
T ss_pred ccHHHHHHHHHHHH
Confidence 2366777777773
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-05 Score=84.97 Aligned_cols=189 Identities=17% Similarity=0.151 Sum_probs=142.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044169 451 KFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLS 530 (742)
Q Consensus 451 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 530 (742)
+++|-...-..+.+.+...|-...|..+|+++. .|.-.|.+|+..|+..+|..+..+-.+ -+||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 456666677778888888899999998888754 677788888888888888888888777 3788888888888
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHcCCHHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISN-LPIKP-TAPIWRPLFAACRCHSDLKM 608 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~ 608 (742)
......-+++|.++.+..... .-..+.....+.++++++.+.|+. +...| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888877888888888765331 112222333446788888888775 33444 46677777777778888888
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 609 AEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 609 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
|.+.|...+.++|++...++++..+|.+.|+-.+|...+++..+..
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 8888888888888888888888888888888888888888777655
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.8e-07 Score=56.51 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=25.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044169 451 KFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT 483 (742)
Q Consensus 451 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 483 (742)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777764
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00016 Score=73.55 Aligned_cols=117 Identities=21% Similarity=0.147 Sum_probs=73.8
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHH
Q 044169 532 CSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMA 609 (742)
Q Consensus 532 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a 609 (742)
+...|.+++|+..++.+.+ ..+-|+.......+.+.+.++.++|.+.++++. ..|+ ...+.++..++.+.|+..+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 4445666777777766654 333344444555567777777777777776654 4454 55566666667777777777
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 610 EFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
+..++.....+|+|+..|..|+.+|...|+..++.....++
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 77777777777777777777777666666666665554443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.5e-05 Score=80.08 Aligned_cols=218 Identities=13% Similarity=0.095 Sum_probs=175.7
Q ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHH
Q 044169 349 GMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSIL 428 (742)
Q Consensus 349 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 428 (742)
+++|-...-..+...+.+.|-...|..+|++.. .|...|.+|+..|+..+|..+..+-.+ -+||...|..+.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 356666777788999999999999999999986 788899999999999999999988777 378999999998
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHH
Q 044169 429 KACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARK 505 (742)
Q Consensus 429 ~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 505 (742)
+......-+++|.++.+..... .-..+.....+.++++++.+.|+.-. .-...+|-.+..+..+.++++.
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 8888888888888888765432 11112222234689999999998654 3345688888888899999999
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044169 506 AIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNL 584 (742)
Q Consensus 506 A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (742)
|.+.|..-.. ..||. ..|+.+-.+|.+.++-.+|...+++..+ .. ..+...|...+-.....|.+++|++.+.++
T Consensus 538 av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 538 AVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999887 58887 5699999999999999999999999977 34 334445667777788999999999998876
Q ss_pred C
Q 044169 585 P 585 (742)
Q Consensus 585 ~ 585 (742)
.
T Consensus 614 l 614 (777)
T KOG1128|consen 614 L 614 (777)
T ss_pred H
Confidence 4
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00017 Score=81.53 Aligned_cols=226 Identities=14% Similarity=0.087 Sum_probs=174.7
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHhC-C---CCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCC-hhhHHHH
Q 044169 318 NEYTFTVALASCASLRNSHMGYMFHAQVIKRG-M---ALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSAS-SVSWNAQ 392 (742)
Q Consensus 318 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g-~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l 392 (742)
+...|..-|.-....++.++|+.+.++.++.- + .--.-+|.++++.....|.-+...++|++.-.--| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34456666667777788888888887776532 1 11245788888888888988999999999832333 4568889
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCC
Q 044169 393 IAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFE-SNVHVGSSLIEAYNKCGS 471 (742)
Q Consensus 393 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~~~~~g~ 471 (742)
...|.+.+..++|-++|+.|.+. +.-....|...+..+.+..+-+.|..++.++.+.--. -......-.+.+-.++|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999886 3456778999999999999999999999988875211 134556667777889999
Q ss_pred HHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHH
Q 044169 472 WEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN--STFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 472 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 544 (742)
.+.+..+|+... +.....|+..|..-.++|+.+.+..+|++....++.|-. ..|...+..-.+.|+-+.++.+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 999999999887 345678999999999999999999999999999888876 4566666655555654444333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.5e-05 Score=71.89 Aligned_cols=125 Identities=17% Similarity=0.097 Sum_probs=65.8
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHc
Q 044169 526 LAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCH 603 (742)
Q Consensus 526 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~ 603 (742)
..+-.++...|+-+....+...... ....|......++....+.|++.+|+..|++.. .++|...|+.+..+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 3334444445555555444444321 223344444445555555555555555555542 334555555555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 604 SDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 604 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
|+++.|...|.+++++.|+++.+++.|+-.|.-.|++++|..++.....
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555555555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0026 Score=61.55 Aligned_cols=312 Identities=9% Similarity=0.023 Sum_probs=179.9
Q ss_pred HHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHH---HHHHHhCCCcch
Q 044169 226 AICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAI---INGFKQHGDYEK 302 (742)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~ 302 (742)
..+...|++..|+.-|...++.+ +.+-.++-.-...|...|+-..|+.=|.++.+-.+.-+.+- ...+.++|.++.
T Consensus 46 k~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHH
Confidence 33344445555554444444321 11111112223345555555555555555443222222222 234667777888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc--
Q 044169 303 PLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-- 380 (742)
Q Consensus 303 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-- 380 (742)
|..=|+..++.. |+..+- ..+..+.--.++-.. ....+..+...|+...|++....+
T Consensus 125 A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 125 AEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred HHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 877777776652 322211 111111111111111 112333455667888888777766
Q ss_pred CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHH
Q 044169 381 GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGS 460 (742)
Q Consensus 381 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~ 460 (742)
-.+.|...+..-..+|...|++..|+.-++...+.. .-+..++--+-..+...|+.+.+....++..+. .||...+-
T Consensus 184 i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf 260 (504)
T KOG0624|consen 184 IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCF 260 (504)
T ss_pred cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHH
Confidence 226677778888888999999998888777765543 223444445555666777777777776666653 45543221
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HH---HHHHHHHHhcc
Q 044169 461 SLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN--ST---FLAVLSACSHS 535 (742)
Q Consensus 461 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t---~~~ll~a~~~~ 535 (742)
.. | ..+.+..+.++.| ......++|.++++..+...+. .|.. ++ +..+-.++...
T Consensus 261 ~~---Y---KklkKv~K~les~------------e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 261 PF---Y---KKLKKVVKSLESA------------EQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HH---H---HHHHHHHHHHHHH------------HHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeeccccc
Confidence 11 1 1222223332222 2345667888888888888774 4542 33 45555677888
Q ss_pred CcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044169 536 GLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 536 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
|++.+|++...++. .+.|| +.++.--.++|.-...+++|+.-|+...
T Consensus 321 ~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred CCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999886 45565 7888888999999999999999998765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.4e-05 Score=69.44 Aligned_cols=154 Identities=15% Similarity=0.107 Sum_probs=108.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh
Q 044169 491 NSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR 570 (742)
Q Consensus 491 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 570 (742)
..+-..+...|+-+....+....... ..-|.......+......|++.+|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44555666677777776666664432 122223344466677777888888888877754 556777778888888888
Q ss_pred cCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 044169 571 AGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQR 647 (742)
Q Consensus 571 ~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 647 (742)
.|++++|..-|.+.. ..| ++...+.+...+.-.|+++.|+.++.......+.|+.+-..|+.+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 888888877776543 333 46667777777888888888888888888777778888888888888888888886654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00066 Score=63.50 Aligned_cols=249 Identities=13% Similarity=0.037 Sum_probs=117.6
Q ss_pred HHhCCCHHHHHHHHHhcCCC-CChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHH-
Q 044169 364 YSGLGEIWEAKKQLKEMGKS-ASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCE- 441 (742)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~- 441 (742)
|.-.|.+..+...-...... .++..-.-+-++|...|.+.....- +.. |-.|....+..+......-++.+.-.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHHHH
Confidence 34446666655554444212 3333334455666666655433221 111 11333344444433333344433322
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 044169 442 QIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT 521 (742)
Q Consensus 442 ~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 521 (742)
.+.+.+.......+......-...|++.|++++|.+.......-.. .-.=+..+.+..+.+-|.+.+++|.+ --+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~--~Al~VqI~lk~~r~d~A~~~lk~mq~---ide 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEA--AALNVQILLKMHRFDLAEKELKKMQQ---IDE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHc---cch
Confidence 3334444443333333333334456777777777777766332222 22223344455666677777777765 223
Q ss_pred HHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHH
Q 044169 522 NSTFLAVLSACSH----SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRP 595 (742)
Q Consensus 522 ~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ 595 (742)
..|.+-|..++.+ .+.+.+|.-+|++|-. ..+|+..+.+..+.+....|++++|..++++.. ...++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3455545544432 3345666666666632 345555555555555555566666655555543 1223444444
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHhcCCCC
Q 044169 596 LFAACRCHS-DLKMAEFISKQILELDPDD 623 (742)
Q Consensus 596 l~~~~~~~g-~~~~a~~~~~~~~~~~p~~ 623 (742)
++-.-...| +.+...+...++....|++
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 444333333 2333444445555555543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0075 Score=62.20 Aligned_cols=210 Identities=12% Similarity=0.118 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcC----CCCchHHHHHHHHHHHcCCHHHHHHHH
Q 044169 438 ATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCG---SWEDAERVFSQLT----AADVVSWNSMIKAYSQNGRARKAIILF 510 (742)
Q Consensus 438 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~ 510 (742)
+++..+++.....-...+..+|..+.+---..- ..+.....++++. ..-..+|-..+..-.+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555444322333444444332211111 1344444444443 222346888888888888899999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCC---
Q 044169 511 EKMVVEGIRP-TNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPI--- 586 (742)
Q Consensus 511 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 586 (742)
.+..+.+..+ +....++++.-++. ++.+.|.++|+.=.+.+| -++......++-+.+.++-..|..+|++...
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 55677788876664 788999999998777544 4455567889999999999999999998752
Q ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 587 KPT--APIWRPLFAACRCHSDLKMAEFISKQILELDPDD----AAVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 587 ~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
.|| ...|..++..-..-||+..+.++-++....-|.+ ...-..+.+.|.-.+.+..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 333 5789999999999999999999999887766622 123455666777777766555555544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00012 Score=68.62 Aligned_cols=154 Identities=8% Similarity=0.120 Sum_probs=112.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 044169 463 IEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQ 542 (742)
Q Consensus 463 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 542 (742)
+-.|...|+++.+..-.+.+..+. ..|...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 446777888777655443332221 01123566788888888877742 444567888888999999999999
Q ss_pred HHHHHhHHhcCCCCcHHHHHHHHHHH-hhcCC--HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044169 543 KVFESMVKEYGILPEEAHYSCMVDLL-GRAGK--LEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQIL 617 (742)
Q Consensus 543 ~~~~~m~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 617 (742)
..|++..+ -.+.+...+..+..++ .+.|+ .++|.+++++.. ..| +...+..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998865 2234667788888864 67777 589999998864 445 67788888888999999999999999999
Q ss_pred hcCCCCchhH
Q 044169 618 ELDPDDAAVY 627 (742)
Q Consensus 618 ~~~p~~~~~~ 627 (742)
++.|.+..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9987655443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0084 Score=61.85 Aligned_cols=173 Identities=16% Similarity=0.148 Sum_probs=120.5
Q ss_pred cHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHH
Q 044169 402 TEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFES-NVHVGSSLIEAYNKCGSWEDAERVFS 480 (742)
Q Consensus 402 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 480 (742)
.+...+.+++....-..--..+|...++...+..-+..|+.+|.++.+.+..+ ++.++++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 44555666665543222234567777888888888889999999998887776 78888888887764 78888999988
Q ss_pred hcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC--
Q 044169 481 QLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN--STFLAVLSACSHSGLVQDGQKVFESMVKEYG-- 553 (742)
Q Consensus 481 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 553 (742)
.-. ..++.--...+.-+...++-..+..+|++.+..++.||. ..|..++.--+.-|++..+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 654 233444455677777888888999999999888777776 5688888888888998888888777754333
Q ss_pred CCCcHHHHHHHHHHHhhcCCHH
Q 044169 554 ILPEEAHYSCMVDLLGRAGKLE 575 (742)
Q Consensus 554 ~~p~~~~~~~l~~~~~~~g~~~ 575 (742)
..+....-..+++.|.-.+...
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hcCCCChHHHHHHHHhhccccc
Confidence 2222233344555555555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.1e-05 Score=73.62 Aligned_cols=181 Identities=12% Similarity=0.019 Sum_probs=127.9
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-Cch---H
Q 044169 419 CDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESN---VHVGSSLIEAYNKCGSWEDAERVFSQLT--AA-DVV---S 489 (742)
Q Consensus 419 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~---~ 489 (742)
.....+......+...|+++.|...++.+.+.. +.+ ...+..+..+|.+.|++++|...++++. .| +.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345677778888899999999999999988754 222 2466788899999999999999999886 23 222 4
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHH
Q 044169 490 WNSMIKAYSQN--------GRARKAIILFEKMVVEGIRPTNS-TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAH 560 (742)
Q Consensus 490 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 560 (742)
+..+..++.+. |++++|.+.|+++.+. .|+.. .+..+..... .. ... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHH-H--------HH
Confidence 55566666654 7899999999999874 56542 2222211100 00 000 0 11
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP-I---KP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDP 621 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 621 (742)
...+...|.+.|++++|+..+++.. . .| ....|..+..++.+.|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 2356678889999999998888753 2 23 356788889999999999999998888877665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00011 Score=81.88 Aligned_cols=188 Identities=11% Similarity=0.066 Sum_probs=138.2
Q ss_pred HHHHHHHHhcCCCCHHHH-HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC------CCCchHHHHHHH
Q 044169 423 TYSSILKACSLLPSLATC-EQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT------AADVVSWNSMIK 495 (742)
Q Consensus 423 t~~~ll~~~~~~g~~~~a-~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~ 495 (742)
....+=.+.+..|..+++ .+++.++.+ + ..+.+.+..+..-+-+.. ..++..+..|..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~ 94 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------V---LERHAAVHKPAAALPELLDYVRRYPHTELFQVLVAR 94 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------H---HHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHH
Confidence 333344455666766554 455555543 2 233344333333332222 345778888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCH
Q 044169 496 AYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKL 574 (742)
Q Consensus 496 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 574 (742)
...+.|++++|..+++...+ +.||. .....+...+.+.+++++|....++... .-+-+......+..++...|++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcch
Confidence 99999999999999999998 68887 4677788899999999999999999865 3334556778888999999999
Q ss_pred HHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 044169 575 EIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVT 629 (742)
Q Consensus 575 ~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 629 (742)
++|.++|++.. ..|+ ..+|.++..++...|+.++|...|+++++...+-...|..
T Consensus 171 ~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 171 EQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 99999999875 3444 7889999999999999999999999999986544444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00038 Score=64.50 Aligned_cols=171 Identities=15% Similarity=0.179 Sum_probs=119.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044169 458 VGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSM---IKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSH 534 (742)
Q Consensus 458 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 534 (742)
+|..++-+..-+|+.+.|...++.+...=+.++... ..-+-..|++++|+++++..++.. +.|.+++..=+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 444455555666777777777776652112111111 122345788999999999998864 4445677766666777
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc---CCHHHH
Q 044169 535 SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCH---SDLKMA 609 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~---g~~~~a 609 (742)
.|+--+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++. ..| ++..+..+...+... .+.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7887788888888776 567899999999999999999999999999875 566 455555566554333 377889
Q ss_pred HHHHHHHHhcCCCCchhHHHHH
Q 044169 610 EFISKQILELDPDDAAVYVTLS 631 (742)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~ 631 (742)
.+.|.++++++|.+...+..+.
T Consensus 211 rkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHHHhChHhHHHHHHHH
Confidence 9999999999996665554443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00016 Score=80.48 Aligned_cols=192 Identities=14% Similarity=0.081 Sum_probs=138.4
Q ss_pred HHHHHHHHhCCCcHHHHH-HHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 044169 390 NAQIAGFFRNQKTEEAIE-AFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNK 468 (742)
Q Consensus 390 ~~li~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 468 (742)
..+=.+...-|..++|-+ ++.+.. .++..........++.--.....+ ....+...+..|.....+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i~~~ 98 (694)
T PRK15179 32 DLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVARALEA 98 (694)
T ss_pred hHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHHHHHH
Confidence 333345666777777643 333332 233333333333333222222222 346678889999999999
Q ss_pred cCCHHHHHHHHHhcC--CCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHH
Q 044169 469 CGSWEDAERVFSQLT--AAD-VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 469 ~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 544 (742)
.|.+++|+.+++... .|| ...+..++.++.+.+++++|+..+++.... .|+. .....+..++.+.|++++|..+
T Consensus 99 ~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A~~~ 176 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQADAC 176 (694)
T ss_pred cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHHHHHH
Confidence 999999999999887 444 457888899999999999999999999984 7777 4566777789999999999999
Q ss_pred HHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 044169 545 FESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFA 598 (742)
Q Consensus 545 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~ 598 (742)
|+++.. ..+-+...+..+..++...|+.++|...|++.. ..|....|+.++.
T Consensus 177 y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 177 FERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 999976 333446788999999999999999999999864 3444555555444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.7e-05 Score=76.66 Aligned_cols=137 Identities=13% Similarity=0.086 Sum_probs=98.0
Q ss_pred HHHHHHHHH-HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHH
Q 044169 505 KAIILFEKM-VVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILP-EEAHYSCMVDLLGRAGKLEIALIFIS 582 (742)
Q Consensus 505 ~A~~~~~~m-~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (742)
+..++|-++ ...+..+|......|.-.|--.|.+++|+..|+.++. ++| |...|+.|.-.++...+.++|+.-|.
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~ 488 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYN 488 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHH
Confidence 344444444 4445446666666666677788899999999988864 445 45578899999999999999999988
Q ss_pred hCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----C-----chhHHHHHHHHHhcCCHHHHH
Q 044169 583 NLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPD-----D-----AAVYVTLSNMYAEAGLQADAE 644 (742)
Q Consensus 583 ~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-----~-----~~~~~~l~~~y~~~g~~~~A~ 644 (742)
+.. .+|. +.++..|.-+|...|.+++|...+-.++.+.+. + -.++.+|-.++.-.++.|-+.
T Consensus 489 rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 489 RALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 764 6776 667778888899999999999998888887543 1 135666666666666655443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.7e-05 Score=68.58 Aligned_cols=96 Identities=21% Similarity=0.226 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 044169 559 AHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAE 636 (742)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 636 (742)
.....++..+...|++++|.+.++... ..| +...|..+...+...|++++|...++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 445667777788888888888887753 233 567777888888888899999999999988999888999999999999
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 044169 637 AGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 637 ~g~~~~A~~~~~~m~~~~ 654 (742)
.|++++|.+.++...+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 98 LGEPESALKALDLAIEIC 115 (135)
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 999999999988877644
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00069 Score=76.28 Aligned_cols=234 Identities=15% Similarity=0.123 Sum_probs=133.2
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHhc-CCCCCh-hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHH
Q 044169 353 GDFVGTAIVDMYSGLGEIWEAKKQLKEM-GKSASS-VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKA 430 (742)
Q Consensus 353 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 430 (742)
+...+..|+..|...+++++|.++.+.. ...|+. ..|-.+...+.+.++.+++..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 3456667777777777777777777654 223433 3333333355555554444433 22333
Q ss_pred hcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHH
Q 044169 431 CSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAI 507 (742)
Q Consensus 431 ~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 507 (742)
.....++..+..+...+.+. ..+...+..+..+|-+.|+.++|..+++++. ..|+...|.+...|... +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 33333444444444444443 2334466677777777777777777777766 34556777777777777 777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 044169 508 ILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIK 587 (742)
Q Consensus 508 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (742)
+++.+.... +....++..+.++|.++.. ..+-+...+-.+....... ....
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~~~~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------REFT 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------hccc
Confidence 777776653 4444566666677766654 2222222222222211111 1112
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 044169 588 PTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYA 635 (742)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 635 (742)
.-..++..+-..|...++++++..+++.+++.+|.|..+...++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 234445555566667777777777777777777777777777776665
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00059 Score=69.51 Aligned_cols=145 Identities=13% Similarity=0.075 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc-HHHHHHHH
Q 044169 488 VSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTF-LAVLSACSHSGLVQDGQKVFESMVKEYGILPE-EAHYSCMV 565 (742)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~ 565 (742)
..+-...-.+...|++++|+..++.++.. .||...| ......+...++.++|.+.++.+.. ..|+ ....-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHH
Confidence 34444455566789999999999998875 6766554 4455678899999999999999864 4565 55666788
Q ss_pred HHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 044169 566 DLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 643 (742)
.+|.+.|++.+|+.++++.. .+.|+..|..|..+|...|+..++.. ..+..|+-.|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHH
Confidence 99999999999999998864 44578999999999999998766655 455678889999999
Q ss_pred HHHHHHHHhCC
Q 044169 644 EEQRKLMKMKE 654 (742)
Q Consensus 644 ~~~~~~m~~~~ 654 (742)
........++.
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 99998887654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00035 Score=70.49 Aligned_cols=187 Identities=9% Similarity=0.047 Sum_probs=136.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccC
Q 044169 462 LIEAYNKCGSWEDAERVFSQLTAA---DVVSWNSMIKAYSQNG-RARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSG 536 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 536 (742)
+-..+...++.++|..+..++... +..+|+.-...+...| ++++++..++++.+. .|+. .+|..-...+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcC
Confidence 333445567888899888887733 4446776666777777 689999999999985 4544 45665544555555
Q ss_pred c--HHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHc---CC----
Q 044169 537 L--VQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCH---SD---- 605 (742)
Q Consensus 537 ~--~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~---g~---- 605 (742)
. .+++..+++.+.+ .-+-+...|+...-++.+.|++++|++.++++. ...|..+|+.....+.+. |.
T Consensus 121 ~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 121 PDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred chhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 5 3677888888875 334567788888899999999999999999875 234677888877766554 22
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc----CCHHHHHHHHHHHHh
Q 044169 606 LKMAEFISKQILELDPDDAAVYVTLSNMYAEA----GLQADAEEQRKLMKM 652 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~----g~~~~A~~~~~~m~~ 652 (742)
.+.......++++.+|+|..+|..+..++... ++..+|.+.+....+
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 35677888899999999999999999999883 455667777766544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.2e-05 Score=76.87 Aligned_cols=122 Identities=14% Similarity=0.116 Sum_probs=97.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHH
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRC 602 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~ 602 (742)
...++..+...++++.|+++|+++.+. .|+ ....++..+...++-.+|++++.+.. ..| +...+......|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 455566667777888888888888652 244 34457777777888888888887754 333 56667777777889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 603 HSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 603 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
.++++.|..+++++.+..|++..+|..|+.+|...|++++|.-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.7e-06 Score=52.05 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCCh
Q 044169 184 ASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNH 218 (742)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 218 (742)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999998873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0011 Score=61.65 Aligned_cols=163 Identities=13% Similarity=0.142 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAV-LSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDL 567 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 567 (742)
.|..++-+....|+.+.|...++++... + |...-...+ ..-+-..|.+++|+++++.+.++ -+.|..++-.=+-+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 3444566677889999999999999886 4 655332222 22345678999999999999874 35667777777777
Q ss_pred HhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC---HHH
Q 044169 568 LGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGL---QAD 642 (742)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~---~~~ 642 (742)
.-..|+--+|++-+.+.. +..|...|.-+...|...|+++.|.-.+++++=..|-++..+..+++.+...|- .+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 778888888887776653 557999999999999999999999999999999999999999999999888775 455
Q ss_pred HHHHHHHHHhCCC
Q 044169 643 AEEQRKLMKMKEI 655 (742)
Q Consensus 643 A~~~~~~m~~~~~ 655 (742)
|.+++.+..+-..
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 6777777665443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0002 Score=62.98 Aligned_cols=113 Identities=8% Similarity=0.019 Sum_probs=85.3
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C
Q 044169 509 LFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-I 586 (742)
Q Consensus 509 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 586 (742)
.+++... ..|+. .....+...+...|++++|.+.++.+.. ..+.+...+..+...|.+.|++++|...+++.. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 35544 4455666777888889999988888865 234466778888888888999999998888753 3
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 044169 587 KP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 587 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
.| +...+..+...+...|+++.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34 5677777888889999999999999999999997655
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.4e-05 Score=51.02 Aligned_cols=35 Identities=34% Similarity=0.698 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 044169 488 VSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN 522 (742)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 522 (742)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999999873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00031 Score=72.31 Aligned_cols=127 Identities=13% Similarity=0.105 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 044169 457 HVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSG 536 (742)
Q Consensus 457 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 536 (742)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.++. .+-+......-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 344556677777889999999999998777777777888888889999999999998874 2334455665666788999
Q ss_pred cHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 044169 537 LVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPI 586 (742)
Q Consensus 537 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (742)
+++.|.++.+++.+ -.+-+..+|..|+.+|...|++++|+..++.++.
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999875 3334456899999999999999999999999873
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0033 Score=59.01 Aligned_cols=177 Identities=10% Similarity=0.109 Sum_probs=119.3
Q ss_pred CCCcHHHHH-HHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 044169 399 NQKTEEAIE-AFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAER 477 (742)
Q Consensus 399 ~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 477 (742)
-++.++-+. +.+.+.......+......-...|...+++++|.+..... -+......=+..+.|..+++-|++
T Consensus 85 e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 85 ESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEK 158 (299)
T ss_pred cchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHH
Confidence 344333333 3344444433444344444455678888888888776642 122223333555678888999999
Q ss_pred HHHhcCCCCc-hHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 044169 478 VFSQLTAADV-VSWNSMIKAYSQ----NGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEY 552 (742)
Q Consensus 478 ~~~~~~~~~~-~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 552 (742)
.+++|.+.|- .+.+.|..++.+ .+...+|.-+|++|-++ ..|+..+.+....++...|++++|..++++...
T Consensus 159 ~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~-- 235 (299)
T KOG3081|consen 159 ELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD-- 235 (299)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--
Confidence 9999986544 466667777664 34688999999999875 789999999999999999999999999999876
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHH-HHHHhC
Q 044169 553 GILPEEAHYSCMVDLLGRAGKLEIAL-IFISNL 584 (742)
Q Consensus 553 ~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 584 (742)
....++.+...++-+-...|...++. +.+.+.
T Consensus 236 kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 236 KDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 34456677777776666666654443 444444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.062 Score=59.18 Aligned_cols=157 Identities=13% Similarity=0.104 Sum_probs=84.0
Q ss_pred HHHHHHHhcCCCCHHH---HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCchHHHHHHHH
Q 044169 424 YSSILKACSLLPSLAT---CEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT----AADVVSWNSMIKA 496 (742)
Q Consensus 424 ~~~ll~~~~~~g~~~~---a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~ 496 (742)
.+.++..+-+.++... |+-+++...... +.+..+--.+|..|+-.|-+..|.++|..+. +.|...|- +..-
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence 3456666777776652 333333333322 3444555567888888888888888888776 23333332 2234
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHH---HHHhHHhcCCCCcHHHHHHHHHHHhhcC
Q 044169 497 YSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKV---FESMVKEYGILPEEAHYSCMVDLLGRAG 572 (742)
Q Consensus 497 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~---~~~m~~~~~~~p~~~~~~~l~~~~~~~g 572 (742)
+...|++..+...++..... +..+. .+-..+..||. .|.+.+..++ -+++.. .....-..+-+..++.++..+
T Consensus 517 ~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr-~g~ySkI~em~~fr~rL~~-S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYR-RGAYSKIPEMLAFRDRLMH-SLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHH-cCchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 44566777666666655442 11111 22223333433 3444443332 223321 111122334566778888889
Q ss_pred CHHHHHHHHHhCC
Q 044169 573 KLEIALIFISNLP 585 (742)
Q Consensus 573 ~~~~A~~~~~~~~ 585 (742)
+.++-...+..|.
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 9888888888776
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.9e-05 Score=50.01 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHchhCCCCC
Q 044169 184 ASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQP 216 (742)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 216 (742)
.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.2e-05 Score=49.00 Aligned_cols=33 Identities=27% Similarity=0.682 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 044169 488 VSWNSMIKAYSQNGRARKAIILFEKMVVEGIRP 520 (742)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 520 (742)
.+|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00065 Score=60.43 Aligned_cols=114 Identities=15% Similarity=0.066 Sum_probs=58.4
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCCHHH
Q 044169 535 SGLVQDGQKVFESMVKEYGILP-EEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPTA----PIWRPLFAACRCHSDLKM 608 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~ 608 (742)
.++...+...++.+.++++-.+ .....-.+...+...|++++|...|+... ..||. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4455555555555544322111 01122234455555566666665555543 11222 123334445556666666
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 044169 609 AEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 609 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
|...++.. .-.+-.+..+..++++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 12222455667777777777777777777764
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.081 Score=58.33 Aligned_cols=509 Identities=12% Similarity=0.066 Sum_probs=243.0
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhc--cccchHHHHHHHHHHHHhccCCChhHHHH
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCS--REECLELGRRYHALITKTAVCGDQFVTAS 157 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 157 (742)
...+++..|+....++++..+ + ..|..++.++. +.|..++|..+++.....+.. |..+...
T Consensus 20 ld~~qfkkal~~~~kllkk~P---------------n-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~ 82 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHP---------------N-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQF 82 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCC---------------C-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHH
Confidence 566778888888888776543 2 23555566543 667788888777766655533 7778888
Q ss_pred HHHHHHhcCChhHHHHHHccCCC--CCcccHHHHHHHHHhCCCh----HHHHHHHHHchhCCCCCChhhHHHHHHHHccC
Q 044169 158 LVNMYAKCGDIKSMVAVVKQMPY--LDIASCNCLLAGYAKNALF----DQAFSFFLKLDGIDVQPNHYTYSTMLAICGSL 231 (742)
Q Consensus 158 li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 231 (742)
+-..|.+.|+.++|..++++... |+..-...+..+|++.+++ ..|+++++.. +-+.+.|=++++...+.
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~-----pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF-----PKRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CcccchHHHHHHHHHHh
Confidence 88888888888888888888765 3333334445566665554 4455555533 22344443444433321
Q ss_pred C----------ChHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhCCChHHHHHHHhc-c----CCCCcchHHHHHHHHH
Q 044169 232 S----------AIDEGKQLHAQTMKLQ-YLSKTAVSNALLTMYIKCGMMEDAESVFEG-L----VQRNVISWTAIINGFK 295 (742)
Q Consensus 232 ~----------~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~----~~~~~~~~~~li~~~~ 295 (742)
. -+.-|....+.+.+.+ ...+..-...-...+...|++++|.+++.. . ..-+...-+--+..+.
T Consensus 158 ~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk 237 (932)
T KOG2053|consen 158 IFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLK 237 (932)
T ss_pred ccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 1 1123444445544443 111111112223334456777777777722 1 2223444445566677
Q ss_pred hCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Q 044169 296 QHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKK 375 (742)
Q Consensus 296 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 375 (742)
..++|.+..++-.++...| +|. |...+.. +++.+.....+| ... .+...+.++...+
T Consensus 238 ~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~s------------v~klLe~~~~~~-a~~------~~s~~~~l~~~~e 294 (932)
T KOG2053|consen 238 LLNRWQELFELSSRLLEKG--NDD--YKIYTDS------------VFKLLELLNKEP-AEA------AHSLSKSLDECIE 294 (932)
T ss_pred HhcChHHHHHHHHHHHHhC--Ccc--hHHHHHH------------HHHHHHhccccc-chh------hhhhhhhHHHHHH
Confidence 7777777777777776664 232 2221111 111111110000 000 1111222222222
Q ss_pred HHHhc-CCCCChhhHHHHHHHH---HhCCCcHHHHHHHHHHhHcCCCC----C---------hHHHHHHHHHhcCCC-CH
Q 044169 376 QLKEM-GKSASSVSWNAQIAGF---FRNQKTEEAIEAFSQMVRNDAAC----D---------EFTYSSILKACSLLP-SL 437 (742)
Q Consensus 376 ~~~~~-~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p----~---------~~t~~~ll~~~~~~g-~~ 437 (742)
..++. + ...-..|-+-+..+ -.-|+.++++-.|-+-. |-+| | ..-...+++.+.... +.
T Consensus 295 k~~~~i~-~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf--g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~ 371 (932)
T KOG2053|consen 295 KAQKNIG-SKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF--GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDS 371 (932)
T ss_pred HHHHhhc-ccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh--CCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcc
Confidence 22222 1 11111122222222 23355555443332211 1111 1 111122222222111 11
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-----HHHHHHHHh----cCC---------C------Cc---hHH
Q 044169 438 ATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSW-----EDAERVFSQ----LTA---------A------DV---VSW 490 (742)
Q Consensus 438 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~----~~~---------~------~~---~~~ 490 (742)
....++... +.+.+..-.-.|.+ +.-..++.+ ... | +. .+-
T Consensus 372 s~~~k~l~~------------h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav 439 (932)
T KOG2053|consen 372 SGDEKVLQQ------------HLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAV 439 (932)
T ss_pred hhhHHHHHH------------HHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHH
Confidence 111111110 11111111111211 111111111 110 1 11 245
Q ss_pred HHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHH
Q 044169 491 NSMIKAYSQNGRAR---KAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDL 567 (742)
Q Consensus 491 ~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 567 (742)
+.|+..+.+.++.. +|+-+++.-... -+-|..+-..+++.|+-.|-...|.++|+.+-- ..+..|...|- +...
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdI-K~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDI-KNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcch-HHhhhccchHH-HHHH
Confidence 67888888888766 445555554442 123345667778889888999999999988732 35555544332 3355
Q ss_pred HhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCCHH
Q 044169 568 LGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD----DAAVYVTLSNMYAEAGLQA 641 (742)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~ 641 (742)
+...|++..+...+.... ...+..----++.-..++|.+....++..---.+.-. -..+-....+..+..++.+
T Consensus 517 ~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~ 596 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGT 596 (932)
T ss_pred HHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 566777777766665432 1111111112333344667666665554433333211 1233455677778888888
Q ss_pred HHHHHHHHHH
Q 044169 642 DAEEQRKLMK 651 (742)
Q Consensus 642 ~A~~~~~~m~ 651 (742)
+-...+..|.
T Consensus 597 q~~~~~~~~~ 606 (932)
T KOG2053|consen 597 QLLKLLESMK 606 (932)
T ss_pred HHHHHHhccc
Confidence 8888888776
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0072 Score=68.40 Aligned_cols=148 Identities=16% Similarity=0.262 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhC
Q 044169 320 YTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRN 399 (742)
Q Consensus 320 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 399 (742)
..+..+..+|.+.|+.+++..+++.+++.. +.++.+.|.+...|... ++++|.+++.+. +..|...
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA------------V~~~i~~ 182 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA------------IYRFIKK 182 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH------------HHHHHhh
Confidence 345555556666666666666666666655 45666677777777777 777777666554 2235566
Q ss_pred CCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044169 400 QKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKS-KFESNVHVGSSLIEAYNKCGSWEDAERV 478 (742)
Q Consensus 400 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~ 478 (742)
+++.++.+++.++.... |+...+ -.++.+.+... |..--+.++-.+-..|-+.++++++..+
T Consensus 183 kq~~~~~e~W~k~~~~~--~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 183 KQYVGIEEIWSKLVHYN--SDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred hcchHHHHHHHHHHhcC--cccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 67777777777776642 222211 11122222221 2223334445555666666666677766
Q ss_pred HHhcC---CCCchHHHHHHHHHH
Q 044169 479 FSQLT---AADVVSWNSMIKAYS 498 (742)
Q Consensus 479 ~~~~~---~~~~~~~~~li~~~~ 498 (742)
|+.+. +.|.....-++.+|.
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHH
Confidence 66665 233444555555554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00022 Score=57.78 Aligned_cols=93 Identities=25% Similarity=0.226 Sum_probs=74.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
+..++..+...|++++|.+.+++.. ..| +...+..+...+...++++.|.+.++.+++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4456677778888888888887753 333 44667777777888899999999999999999888888999999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 044169 639 LQADAEEQRKLMKMK 653 (742)
Q Consensus 639 ~~~~A~~~~~~m~~~ 653 (742)
++++|...+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988877643
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.05 Score=54.94 Aligned_cols=125 Identities=15% Similarity=0.189 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 044169 458 VGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGL 537 (742)
Q Consensus 458 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 537 (742)
+.+..+.-+...|+...|.++..+..-|+..-|-..+.+|+..++|++-.++... +-.++-|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344455566778888888888888888888888889999999998876665432 1233668888888888888
Q ss_pred HHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 044169 538 VQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRC 602 (742)
Q Consensus 538 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 602 (742)
.++|..+...+ + +..-+.+|.++|++.+|.+.-.+.. |...+..+...|..
T Consensus 253 ~~eA~~yI~k~-------~----~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~~~ 303 (319)
T PF04840_consen 253 KKEASKYIPKI-------P----DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRCPG 303 (319)
T ss_pred HHHHHHHHHhC-------C----hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHCCC
Confidence 88888887653 1 2446778888888888887755533 55555444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.80 E-value=7e-05 Score=56.77 Aligned_cols=64 Identities=25% Similarity=0.255 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 044169 589 TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG-LQADAEEQRKLMKM 652 (742)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~A~~~~~~m~~ 652 (742)
++.+|..+...+...|++++|+..++++++++|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999 79999999988765
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00056 Score=58.40 Aligned_cols=92 Identities=14% Similarity=0.035 Sum_probs=46.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHH
Q 044169 562 SCMVDLLGRAGKLEIALIFISNLP-IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPDD---AAVYVTLSNM 633 (742)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 633 (742)
..++..+.+.|++++|.+.|+++. ..|+ ...+..+...+.+.|+++.|...++.++...|++ +.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 334444445555555555554432 1121 2233444445555555555555555555555542 3345555555
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 044169 634 YAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 634 y~~~g~~~~A~~~~~~m~~~ 653 (742)
|.+.|++++|.+.++.+.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55566666666555555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00049 Score=65.77 Aligned_cols=108 Identities=17% Similarity=0.092 Sum_probs=73.8
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHH
Q 044169 532 CSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMA 609 (742)
Q Consensus 532 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a 609 (742)
..+.+++++|+..|.+.++ -.+.|...|..-..+|.+.|.++.|++=.+... +.|. ..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4456677777777777764 233455556666777777777777776666543 4443 66778888888888888888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCHH
Q 044169 610 EFISKQILELDPDDAAVYVTLSNMYAEAGLQA 641 (742)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 641 (742)
++.|+++++++|++......|-.+-.+.+.-.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 88888888888887766666666555544443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00085 Score=57.30 Aligned_cols=105 Identities=14% Similarity=0.096 Sum_probs=64.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHH
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEYGILP-EEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT----APIWRPLFA 598 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~ 598 (742)
+..+...+...|++++|.+.|..+.+...-.+ ....+..+..++.+.|++++|.+.++.+. ..|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555566666666666666654321111 12344456666777777777777766543 2222 445666777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 044169 599 ACRCHSDLKMAEFISKQILELDPDDAAVYVT 629 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 629 (742)
++...|+.+.|...++++++..|+++.+...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 7788888888888888888888876654443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.2e-05 Score=60.11 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 044169 572 GKLEIALIFISNLP-IKP---TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQR 647 (742)
Q Consensus 572 g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 647 (742)
|++++|+.+++++. ..| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44555555555442 112 333444455666666666666666666 5555656666667788888888888888777
Q ss_pred HH
Q 044169 648 KL 649 (742)
Q Consensus 648 ~~ 649 (742)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 64
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0027 Score=56.43 Aligned_cols=123 Identities=17% Similarity=0.147 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH--HHHHHHH
Q 044169 491 NSMIKAYSQNGRARKAIILFEKMVVEGIRPTN---STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEE--AHYSCMV 565 (742)
Q Consensus 491 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~ 565 (742)
..++..+ ..++...+...++.+.+.. +.+. .....+...+...|++++|...|+.+... ...|+. ...-.|.
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 3344444 3666777777777776642 2221 22333445666777777777777777653 211211 1233456
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044169 566 DLLGRAGKLEIALIFISNLPIKP-TAPIWRPLFAACRCHSDLKMAEFISKQI 616 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 616 (742)
.++...|++++|+..++.....+ ....+......+...|+.++|...|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67777777777777776654222 3444555666677777777777777765
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00041 Score=71.83 Aligned_cols=107 Identities=10% Similarity=0.029 Sum_probs=86.8
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCH
Q 044169 529 LSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDL 606 (742)
Q Consensus 529 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~ 606 (742)
...+...|++++|++.|+++++ .-+.+...|..+..+|.+.|++++|+..++++. ..| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 4566778999999999999976 233456678888899999999999999998864 445 577788888889999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 044169 607 KMAEFISKQILELDPDDAAVYVTLSNMYAEA 637 (742)
Q Consensus 607 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 637 (742)
++|+..++++++++|+++.....+..+..+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999888777776654444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00022 Score=53.26 Aligned_cols=59 Identities=20% Similarity=0.154 Sum_probs=49.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 596 LFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 596 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44567788999999999999999999999999999999999999999999998886543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=7.8e-05 Score=45.95 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHchhCCC
Q 044169 184 ASCNCLLAGYAKNALFDQAFSFFLKLDGIDV 214 (742)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 214 (742)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00025 Score=67.68 Aligned_cols=88 Identities=19% Similarity=0.109 Sum_probs=77.6
Q ss_pred HHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 044169 566 DLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 643 (742)
+-+.+.+++++|+..|.+.. ..| |++.|..-..+|.+.|.++.|++-++.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 44567899999999998854 555 6777788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 044169 644 EEQRKLMKMK 653 (742)
Q Consensus 644 ~~~~~~m~~~ 653 (742)
.+.|++..+-
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9999776543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.12 Score=52.59 Aligned_cols=446 Identities=10% Similarity=0.054 Sum_probs=231.8
Q ss_pred ccccchHHHHHHHHHHHHhccCCC------hhHHHHHHHHHHhcCChhHHHHHHccCCCC-CcccHHHHHHHH--HhCCC
Q 044169 128 SREECLELGRRYHALITKTAVCGD------QFVTASLVNMYAKCGDIKSMVAVVKQMPYL-DIASCNCLLAGY--AKNAL 198 (742)
Q Consensus 128 ~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~--~~~g~ 198 (742)
.+.++..++..+|..+.+.. ..+ ....+.++++|.- ++++.....+.+..+. ....|-.+..++ -+.++
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 35678888888888887663 223 2345667777765 3444444444443321 234466666553 46778
Q ss_pred hHHHHHHHHHchhC--CCCC---C--------hhhH-HHHHHHHccCCChHHHHHHHHHHHHhCC----CCChhHHHHHH
Q 044169 199 FDQAFSFFLKLDGI--DVQP---N--------HYTY-STMLAICGSLSAIDEGKQLHAQTMKLQY----LSKTAVSNALL 260 (742)
Q Consensus 199 ~~~A~~~~~~m~~~--~~~p---~--------~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~li 260 (742)
+.+|++.+..-.+. +-.| | ...+ +..+.++...|++.+++.+++++...=+ .-+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 88888888776654 2221 1 1111 2334556677777777777777665433 35666777766
Q ss_pred HHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CChhHH
Q 044169 261 TMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASL--RNSHMG 338 (742)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a 338 (742)
-+++++=-++-- +.+...=..-|--++-.|.+.=+ .++.-.=..+.|....+..++.-..-. .+..--
T Consensus 175 lmlsrSYfLEl~----e~~s~dl~pdyYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~ 244 (549)
T PF07079_consen 175 LMLSRSYFLELK----ESMSSDLYPDYYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPL 244 (549)
T ss_pred HHHhHHHHHHHH----HhcccccChHHHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHH
Confidence 666553221111 11111111123444444432211 111100012344444444444433322 122223
Q ss_pred HHHHHHHHHhCCCCch-HHHHHHHHHHHhCCCHHHHHHHHHhcCC-------CCChhhHHHHHHHHHhCCCcHHHHHHHH
Q 044169 339 YMFHAQVIKRGMALGD-FVGTAIVDMYSGLGEIWEAKKQLKEMGK-------SASSVSWNAQIAGFFRNQKTEEAIEAFS 410 (742)
Q Consensus 339 ~~i~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~ 410 (742)
.+++....+.-+.|+. -+...|+..+.+ +.+++..+-+.+.. ..-..++..++....+.++..+|-+.+.
T Consensus 245 mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 245 MQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444444444455543 334445555544 33444433333310 2224567888888888999998888887
Q ss_pred HHhHcCCCCChHHHH-------HHHHHhc-CCCCHH---HHHHHHHHHHHhCCCCchhHHHHHH---HHHHhcCC-HHHH
Q 044169 411 QMVRNDAACDEFTYS-------SILKACS-LLPSLA---TCEQIHSRIVKSKFESNVHVGSSLI---EAYNKCGS-WEDA 475 (742)
Q Consensus 411 ~m~~~g~~p~~~t~~-------~ll~~~~-~~g~~~---~a~~i~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A 475 (742)
-+.-. .|+...-. .+-+..+ .-.+.. .-..++..+....+.. .....-|+ .-+-+.|. -++|
T Consensus 323 lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~deka 399 (549)
T PF07079_consen 323 LLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKA 399 (549)
T ss_pred HHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHH
Confidence 66543 33322111 1111222 111222 2223344443332211 11222222 22444555 7888
Q ss_pred HHHHHhcC---CCCchHHHHHH----HHHHHc---CCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHH--HhccCcHH
Q 044169 476 ERVFSQLT---AADVVSWNSMI----KAYSQN---GRARKAIILFEKMVVEGIRPTNST----FLAVLSA--CSHSGLVQ 539 (742)
Q Consensus 476 ~~~~~~~~---~~~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a--~~~~g~~~ 539 (742)
.++++.+. .-|...-|.+. .+|.+. ..+.+-+.+-+-..+.|+.|-.+. -+.+.+| +...|++.
T Consensus 400 lnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~ 479 (549)
T PF07079_consen 400 LNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYH 479 (549)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHH
Confidence 88888776 34554444332 233322 234444555555567788775543 3333333 45678888
Q ss_pred HHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 044169 540 DGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRP 595 (742)
Q Consensus 540 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 595 (742)
++.-.-.-+. .+.|++.+|.-+.-++....++++|.+++..++ |+...+++
T Consensus 480 kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 480 KCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 8876655553 577999999999999999999999999999886 46555554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.002 Score=56.49 Aligned_cols=90 Identities=16% Similarity=0.008 Sum_probs=78.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 044169 563 CMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQ 640 (742)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 640 (742)
....-+...|++++|..+|+-+- ..-+..-|..|...|...++++.|...|..+..++++||.++...+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 44455668899999999998653 2336777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 044169 641 ADAEEQRKLMKM 652 (742)
Q Consensus 641 ~~A~~~~~~m~~ 652 (742)
++|++.|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00012 Score=45.05 Aligned_cols=31 Identities=35% Similarity=0.684 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 044169 488 VSWNSMIKAYSQNGRARKAIILFEKMVVEGI 518 (742)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 518 (742)
++|++++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0035 Score=62.57 Aligned_cols=134 Identities=17% Similarity=0.239 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 488 VSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSA-CSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
.+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999998542 2333445444444 33356777799999999885 4567778899999
Q ss_pred HHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 567 LLGRAGKLEIALIFISNLP-IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
.+.+.|+.+.|..+|++.. .-|. ...|...+..-.+.|+.+....+.+++.+..|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999864 2233 35899999999999999999999999999988643
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0019 Score=66.94 Aligned_cols=103 Identities=10% Similarity=0.013 Sum_probs=81.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc
Q 044169 493 MIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA 571 (742)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 571 (742)
....+...|++++|+..|+++++. .|+ ...|..+..++...|++++|+..++.+++. -+.+...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 345667889999999999999985 555 467888888999999999999999999762 234566788899999999
Q ss_pred CCHHHHHHHHHhCC-CCCCHHHHHHHHHH
Q 044169 572 GKLEIALIFISNLP-IKPTAPIWRPLFAA 599 (742)
Q Consensus 572 g~~~~A~~~~~~~~-~~p~~~~~~~l~~~ 599 (742)
|++++|+..|++.. ..|+.......+..
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999998864 56655544444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0015 Score=60.06 Aligned_cols=80 Identities=16% Similarity=0.095 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNLP-IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
.+..+...+...|++++|...|++.. ..|+ ...+..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45666667777777777777776643 1222 356777788888899999999999999999998888888899998
Q ss_pred HhcCC
Q 044169 635 AEAGL 639 (742)
Q Consensus 635 ~~~g~ 639 (742)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 88777
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0043 Score=67.15 Aligned_cols=140 Identities=16% Similarity=0.076 Sum_probs=74.6
Q ss_pred CCCchHHHHHHHHHHH--cC---CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc
Q 044169 484 AADVVSWNSMIKAYSQ--NG---RARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE 557 (742)
Q Consensus 484 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 557 (742)
..|...|...+.+... .+ +.++|..+|++..+ ..|+. ..+..+..++... .+..|.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~~ 395 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQPL 395 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCCc
Confidence 4566777777776443 22 36688899999888 47776 3344333322111 011110
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHh---C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISN---L-PIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNM 633 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~---~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 633 (742)
.. ++++.+.+..++ + ....++..+..+.......|++++|...++++++++| +...|..++.+
T Consensus 396 ~~------------~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~ 462 (517)
T PRK10153 396 DE------------KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKV 462 (517)
T ss_pred cH------------HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 00 111122222221 1 1122344555554445556666666666666666666 45666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 044169 634 YAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 634 y~~~g~~~~A~~~~~~m~~~~ 654 (742)
|...|+.++|.+.+++.....
T Consensus 463 ~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 463 YELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 666666666666666655443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0019 Score=62.19 Aligned_cols=106 Identities=18% Similarity=0.096 Sum_probs=87.6
Q ss_pred CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHH-cC--CHHHHHHHHHHHHhcCCCCchhHH
Q 044169 554 ILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRC-HS--DLKMAEFISKQILELDPDDAAVYV 628 (742)
Q Consensus 554 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~-~g--~~~~a~~~~~~~~~~~p~~~~~~~ 628 (742)
-+-|...|--|..+|.+.|++..|..-|.+.. ..+++..+..+..++.. .| +..++..++++++.++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 35577889999999999999999999988754 34467777777776432 22 567899999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 044169 629 TLSNMYAEAGLQADAEEQRKLMKMKEISKEP 659 (742)
Q Consensus 629 ~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 659 (742)
.|+..+...|++.+|...|+.|.+.....+|
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999987764444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.018 Score=51.00 Aligned_cols=151 Identities=12% Similarity=0.052 Sum_probs=114.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 044169 498 SQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIA 577 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 577 (742)
.+.=+++...+-..+-.+ ..|+...-..+..+....|++.+|...|++... .-+--|....-.+..+....++..+|
T Consensus 67 ~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 67 QQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHH
Confidence 333344444333333332 578887777888999999999999999999865 23455777888899999999999999
Q ss_pred HHHHHhCC-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 578 LIFISNLP-IKPT---APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 578 ~~~~~~~~-~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
...++++. .+|+ +.....+...+...|..+.|+..++.++.-.| ++..-...+..+.++|+.+++..-+..+.+
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99988753 2222 33445667779999999999999999999999 788888888999999999888776555543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0045 Score=56.88 Aligned_cols=130 Identities=11% Similarity=0.093 Sum_probs=85.6
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHH
Q 044169 487 VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT--NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCM 564 (742)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 564 (742)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+. .+.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 34567777778888888888888888876432222 245777777788888888888888877652 22234556666
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 044169 565 VDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGL 639 (742)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 639 (742)
..+|...|+...+..-++... ..+++|.+.++++++.+|++ |..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 777777776655554332211 12568888999999998865 5555555554443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0018 Score=59.36 Aligned_cols=93 Identities=15% Similarity=-0.054 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSN 632 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 632 (742)
...|..++..+...|++++|+..|++.. ..|+ ..+|..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4456667777888888888888887753 2222 3478888888999999999999999999999988888888888
Q ss_pred HHH-------hcCCHHHHHHHHHHH
Q 044169 633 MYA-------EAGLQADAEEQRKLM 650 (742)
Q Consensus 633 ~y~-------~~g~~~~A~~~~~~m 650 (742)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888776666544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.002 Score=51.95 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHH
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLL 568 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 568 (742)
|..+...+...|++++|...+++..+. .|+ ...+..+...+...+++++|.+.++...+ ..+.+...+..++.++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHH
Confidence 344455555556666666666655543 222 23444444455555555555555555433 1112223334444444
Q ss_pred hhcCCHHHHHHHHH
Q 044169 569 GRAGKLEIALIFIS 582 (742)
Q Consensus 569 ~~~g~~~~A~~~~~ 582 (742)
...|++++|.+.+.
T Consensus 79 ~~~~~~~~a~~~~~ 92 (100)
T cd00189 79 YKLGKYEEALEAYE 92 (100)
T ss_pred HHHHhHHHHHHHHH
Confidence 44444444444443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00076 Score=51.71 Aligned_cols=59 Identities=20% Similarity=0.168 Sum_probs=52.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 597 FAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 597 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
...+.+.++++.|.++++++++++|+++..+..++.+|.+.|++++|.+.++...+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678889999999999999999999999999999999999999999999998886553
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00047 Score=52.00 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=45.2
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 601 RCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 601 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
.+.|++++|+..++++++.+|++..+...++.+|.+.|++++|.++++.+....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 457888999999999999999999999999999999999999999887776543
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.38 Score=52.24 Aligned_cols=342 Identities=13% Similarity=0.068 Sum_probs=184.0
Q ss_pred chhCCCCCChhhHHH-----HHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC---hHHHHHHHhccC
Q 044169 209 LDGIDVQPNHYTYST-----MLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGM---MEDAESVFEGLV 280 (742)
Q Consensus 209 m~~~~~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~ 280 (742)
+..-|++.+..-|.. +++-+...+.+..|.++-..+-..-... ..++.....-+.+..+ -+-+..+=+++.
T Consensus 423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 345677777766654 4666677788888888877654222122 5667777777776632 223334444444
Q ss_pred C--CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCC----CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCch
Q 044169 281 Q--RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGI----DPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGD 354 (742)
Q Consensus 281 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~ 354 (742)
. ...++|..+.+--...|+.+-|..+++.=...+- -.+..-+...+.-+...|+.+...++.-++...-..
T Consensus 502 ~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~--- 578 (829)
T KOG2280|consen 502 AKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNR--- 578 (829)
T ss_pred ccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHH---
Confidence 4 4677898888888889999988888764222211 112233455566677777777777666655543110
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHh------HcCCCCChHHHHHHH
Q 044169 355 FVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMV------RNDAACDEFTYSSIL 428 (742)
Q Consensus 355 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~g~~p~~~t~~~ll 428 (742)
. +......+...|..++...-...|..+ +..+-+.++-.+++..|..=. ..|..|+ .....
T Consensus 579 s------~l~~~l~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a 645 (829)
T KOG2280|consen 579 S------SLFMTLRNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAA 645 (829)
T ss_pred H------HHHHHHHhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHH
Confidence 0 000111122223333333210111000 111112222222222221100 0122222 22333
Q ss_pred HHhcCCCCHHHHHH----------HHHHHH-HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHH
Q 044169 429 KACSLLPSLATCEQ----------IHSRIV-KSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAY 497 (742)
Q Consensus 429 ~~~~~~g~~~~a~~----------i~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 497 (742)
.+|++.....-..+ +...+. +.|......+.+--+.-+...|+..+|.++-.+..-||-..|--=+.++
T Consensus 646 ~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aL 725 (829)
T KOG2280|consen 646 NAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTAL 725 (829)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 44444433211111 111111 1232333333444455566778888888888888888888887778888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 044169 498 SQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIA 577 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 577 (742)
+..+++++-+++-+.+. + +.-|.-...+|.+.|+.++|.+++-+.. |.. -.+.+|.+.|++.+|
T Consensus 726 a~~~kweeLekfAkskk-----s-PIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 726 ADIKKWEELEKFAKSKK-----S-PIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEA 789 (829)
T ss_pred HhhhhHHHHHHHHhccC-----C-CCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHH
Confidence 88888887666655433 1 3446667788888888888888876551 211 466788888888888
Q ss_pred HHHHHh
Q 044169 578 LIFISN 583 (742)
Q Consensus 578 ~~~~~~ 583 (742)
.++--+
T Consensus 790 ad~A~~ 795 (829)
T KOG2280|consen 790 ADLAAE 795 (829)
T ss_pred HHHHHH
Confidence 776433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00023 Score=44.63 Aligned_cols=32 Identities=34% Similarity=0.599 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 044169 613 SKQILELDPDDAAVYVTLSNMYAEAGLQADAE 644 (742)
Q Consensus 613 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 644 (742)
++++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00063 Score=50.72 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=47.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 564 MVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
+...+.+.|++++|++.|++.. ..| +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567778888888888888764 345 567788888888999999999999999999999764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.085 Score=51.26 Aligned_cols=169 Identities=17% Similarity=0.162 Sum_probs=104.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CCc-hH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHh
Q 044169 462 LIEAYNKCGSWEDAERVFSQLTA--ADV-VS---WNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN--STFLAVLSACS 533 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 533 (742)
....+.+.|++++|.+.|+++.. |+. .. .-.++.+|.+.+++++|...+++..+. .|+. .-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 34445667888888888888762 222 12 234566778888999999999888874 4443 23333333322
Q ss_pred c--cC---------------c---HHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH-
Q 044169 534 H--SG---------------L---VQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPI- 592 (742)
Q Consensus 534 ~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~- 592 (742)
. .+ + ..+|.+.|+.+++.+ |+ ..-..+|...+..+. +...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~---~~la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLK---DRLAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHH---HHHHH
Confidence 1 10 1 233444555554432 22 233344544443332 1111
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 593 -WRPLFAACRCHSDLKMAEFISKQILELDPD---DAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 593 -~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
-......|.+.|.+.-|..-++.+++..|+ ...+...+..+|.+.|..++|.++.+...
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 113344588899999999999999998886 44567788899999999999998876653
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.017 Score=52.88 Aligned_cols=80 Identities=8% Similarity=-0.002 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHH
Q 044169 488 VSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT--NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMV 565 (742)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 565 (742)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|+..++...+. .+.....+..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 3556666667777788888887777765422221 235666677777777777777777776542 122233444555
Q ss_pred HHHh
Q 044169 566 DLLG 569 (742)
Q Consensus 566 ~~~~ 569 (742)
.++.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0013 Score=52.04 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=45.2
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-cHHHHHHHHHHHhhcCCHHHH
Q 044169 500 NGRARKAIILFEKMVVEGIR-PTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILP-EEAHYSCMVDLLGRAGKLEIA 577 (742)
Q Consensus 500 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 577 (742)
.|+++.|+.+++++.+..-. |+...+..+..++.+.|++++|.++++. .+ ..| +......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 46777777777777764211 1233444466677777777777777766 21 112 223333446667777777777
Q ss_pred HHHHHh
Q 044169 578 LIFISN 583 (742)
Q Consensus 578 ~~~~~~ 583 (742)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 776654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.32 Score=49.19 Aligned_cols=107 Identities=18% Similarity=0.251 Sum_probs=77.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCC
Q 044169 357 GTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPS 436 (742)
Q Consensus 357 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 436 (742)
.+..|.-+...|+...|.++-.+.. -|+-.-|-..+.+|+..+++++-..+... +-.+..|..++.+|...|+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444566677788888888888887 68888888888999999888877665432 2245778888888888888
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 044169 437 LATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFS 480 (742)
Q Consensus 437 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 480 (742)
..+|..+...+ + +..-+.+|.++|++.+|.+.-.
T Consensus 253 ~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 253 KKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 88877776651 1 1445677888888888876543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0034 Score=62.30 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=83.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHh---HHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-----C-C--CCHH
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESM---VKEYGILP-EEAHYSCMVDLLGRAGKLEIALIFISNLP-----I-K--PTAP 591 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~-~--p~~~ 591 (742)
.|..|.+.|.-.|+++.|+...+.- .+.+|-+. ....++.+..++.-.|+++.|.+.++... . . ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555666666678888888776542 23344332 23467778888888888888888876532 1 1 1233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----C--CCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 592 IWRPLFAACRCHSDLKMAEFISKQILEL----D--PDDAAVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
+.-+|...|.-..+++.|+..+.+-+.+ + .....++.+|+++|...|..++|..+...-
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4556677777777788888777765443 1 225667888899999889888887765544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.014 Score=58.30 Aligned_cols=154 Identities=12% Similarity=0.018 Sum_probs=100.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHhHHhcCCCCcHHH------------
Q 044169 495 KAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLS--ACSHSGLVQDGQKVFESMVKEYGILPEEAH------------ 560 (742)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~------------ 560 (742)
.++...|++++|...--..++. .++. .+...++ ++...++.+.|...|++.++ ..|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 3455677777777766655542 2222 1222222 34456677777777776643 3344322
Q ss_pred -HHHHHHHHhhcCCHHHHHHHHHhCC-CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044169 561 -YSCMVDLLGRAGKLEIALIFISNLP-IKP-----TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNM 633 (742)
Q Consensus 561 -~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 633 (742)
+..=.+-..+.|++.+|.+.+.+.. +.| +.-.|........+.|+.++|+.-.+.+++++|.-...|..-+++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 1122234567888888888887753 333 344555555567788888899999999999888778888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 044169 634 YAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 634 y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+...++|++|.+-+++..+..
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 888899999988888776544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.015 Score=50.84 Aligned_cols=96 Identities=15% Similarity=0.100 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 044169 459 GSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSH 534 (742)
Q Consensus 459 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 534 (742)
.-.+...+...|++++|.++|+-+. ..+..-|-.|..++...|++++|+..|...... .|| +..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHH
Confidence 3344555667888888888888765 345567888888888888888888888888874 444 4677777888888
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC
Q 044169 535 SGLVQDGQKVFESMVKEYGILP 556 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~~~p 556 (742)
.|+.+.|.+.|+..+...+-.|
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccCh
Confidence 8888888888888776444333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.57 Score=50.31 Aligned_cols=286 Identities=16% Similarity=0.158 Sum_probs=135.3
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCC-----CcchHHHHHHHHHhCCCcchHHHH
Q 044169 232 SAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQR-----NVISWTAIINGFKQHGDYEKPLRL 306 (742)
Q Consensus 232 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~ 306 (742)
|++++|++++-++-+.. .-+.++.+.|++-...++++.-... -...|+.+...++....|++|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554443332 2244455555555555555432211 123456666666555556666555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCCh
Q 044169 307 VCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASS 386 (742)
Q Consensus 307 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (742)
|..-... ...+.++.+...+++-+.+ ...++-+....-.+.+++.+.|.-++|.+.|-+-+ .|.
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~l-----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~pk- 882 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVL-----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS-LPK- 882 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHH-----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc-CcH-
Confidence 5442110 0122222222222222111 12234455566667788888888888887777665 332
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 044169 387 VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAY 466 (742)
Q Consensus 387 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 466 (742)
+.+..|...+++.+|.++-++.. -|...|. +.- .|-+++.. .+ + ---|..+
T Consensus 883 ----aAv~tCv~LnQW~~avelaq~~~----l~qv~tl---iak--------~aaqll~~---~~------~-~eaIe~~ 933 (1189)
T KOG2041|consen 883 ----AAVHTCVELNQWGEAVELAQRFQ----LPQVQTL---IAK--------QAAQLLAD---AN------H-MEAIEKD 933 (1189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhcc----chhHHHH---HHH--------HHHHHHhh---cc------h-HHHHHHh
Confidence 34556667777777777766543 2222222 110 11111111 00 0 1135567
Q ss_pred HhcCCHHHHHHHHHhcCCCC---chHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 044169 467 NKCGSWEDAERVFSQLTAAD---VVSWNSMIKAYS----QNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQ 539 (742)
Q Consensus 467 ~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 539 (742)
.+.|+.-+|.+++.+|.+.. -+.|..+-..|. -..++.++++-.++....|...+... +...|-..
T Consensus 934 Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~ 1006 (1189)
T KOG2041|consen 934 RKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLA 1006 (1189)
T ss_pred hhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhh
Confidence 77788777888877775221 111222211111 12234445555555555554433321 12223333
Q ss_pred HHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHH
Q 044169 540 DGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFIS 582 (742)
Q Consensus 540 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (742)
++-++.+..-+ | ....++-.|..--...|..+.|+..--
T Consensus 1007 ~~~ri~~n~Wr--g--AEAyHFmilAQrql~eg~v~~Al~Tal 1045 (1189)
T KOG2041|consen 1007 EQSRILENTWR--G--AEAYHFMILAQRQLFEGRVKDALQTAL 1045 (1189)
T ss_pred hHHHHHHhhhh--h--HHHHHHHHHHHHHHHhchHHHHHHHHh
Confidence 33333332211 1 233455556666677888888876543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.39 Score=48.00 Aligned_cols=276 Identities=14% Similarity=0.118 Sum_probs=175.8
Q ss_pred CCCHHHHHHHHHhcC--CCCChhhHHHHHHH--HHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHH
Q 044169 367 LGEIWEAKKQLKEMG--KSASSVSWNAQIAG--FFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQ 442 (742)
Q Consensus 367 ~g~~~~A~~~~~~~~--~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 442 (742)
.|+-..|.+.-.+.. +..|....-.++.+ -.-.|+++.|.+-|+.|...- .--......|.-...+.|..+.|.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHH
Confidence 355555555544431 12333333333322 234688888888888886520 1111223334444457788888887
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCch--HHHHHHHHHH---HcCCHHHHHHHHHH
Q 044169 443 IHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT-----AADVV--SWNSMIKAYS---QNGRARKAIILFEK 512 (742)
Q Consensus 443 i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~ 512 (742)
.-+..-..- +.-.-...+++...+..|+++.|+++++.-. .+++. .--.|+.+-. -..+...|...-.+
T Consensus 176 yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~ 254 (531)
T COG3898 176 YAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE 254 (531)
T ss_pred HHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 777665542 2224566778888899999999999987654 44443 2223333222 13356667776666
Q ss_pred HHHcCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHH----HHHHhCCCC
Q 044169 513 MVVEGIRPTNST-FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIAL----IFISNLPIK 587 (742)
Q Consensus 513 m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~ 587 (742)
..+ +.||... -..-..++.+.|+..++-.+++.+- ...|.+..+.. ..+.|.|+..... +-+..|. +
T Consensus 255 a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~l--Y~~ar~gdta~dRlkRa~~L~slk-~ 326 (531)
T COG3898 255 ANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIALL--YVRARSGDTALDRLKRAKKLESLK-P 326 (531)
T ss_pred Hhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHHHH--HHHhcCCCcHHHHHHHHHHHHhcC-c
Confidence 665 6788743 4444578999999999999999884 45666665433 3345566532221 1133333 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHHhC
Q 044169 588 PTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEA-GLQADAEEQRKLMKMK 653 (742)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~A~~~~~~m~~~ 653 (742)
.+..+......+....|++..|..-.+.+....| -...|..|+++-... |+-.++...+.+..+.
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4577777788888899999999999999999999 677899999987665 9999999888766543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.016 Score=51.24 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=94.3
Q ss_pred HhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Q 044169 547 SMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP---IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD- 622 (742)
Q Consensus 547 ~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~- 622 (742)
+..++...-|+...--.|..++.+.|+..||...|++.. ...|......+..+....++...|...++++.+.+|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 333444566888888889999999999999999999864 5568888889999999999999999999999999875
Q ss_pred -CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044169 623 -DAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEIS 656 (742)
Q Consensus 623 -~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 656 (742)
.|.....++..|...|++.+|+..|+...+.-..
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 6778889999999999999999999988765543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.001 Score=50.08 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=25.4
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044169 534 HSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 534 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
..|++++|+++|+.+... .+-+...+..++.+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666666655442 22244444455555555555555555555543
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0018 Score=48.94 Aligned_cols=65 Identities=20% Similarity=0.194 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 044169 557 EEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHS-DLKMAEFISKQILELDP 621 (742)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 621 (742)
+...|..+...+...|++++|+..|++.. ..| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34567777788888888888888887653 344 5677888888888888 68999999999998887
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0097 Score=59.39 Aligned_cols=129 Identities=9% Similarity=0.060 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh-cCCHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 044169 523 STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR-AGKLEIALIFISNLP--IKPTAPIWRPLFAA 599 (742)
Q Consensus 523 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 599 (742)
.+|..++..+.+.+..+.|..+|.+..+. -..+..+|...+.+-.+ .++.+.|.++|+... ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888999999999999999753 22344556666666444 566777999999864 55678899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 600 CRCHSDLKMAEFISKQILELDPDDA---AVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 600 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
+...|+.+.+..+|++++..-|.+. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999876544 58999999999999999999999888753
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.022 Score=48.01 Aligned_cols=93 Identities=17% Similarity=0.234 Sum_probs=68.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-cHHHHHHHHHHH
Q 044169 492 SMIKAYSQNGRARKAIILFEKMVVEGIRPTN--STFLAVLSACSHSGLVQDGQKVFESMVKEYGILP-EEAHYSCMVDLL 568 (742)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~ 568 (742)
.+..++-..|+.++|+.+|++....|..... ..+..+.+++...|++++|..++++....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3556777889999999999999998876654 4577778889999999999999998876432111 222333345678
Q ss_pred hhcCCHHHHHHHHHhC
Q 044169 569 GRAGKLEIALIFISNL 584 (742)
Q Consensus 569 ~~~g~~~~A~~~~~~~ 584 (742)
...|+.++|++.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 8889999998887553
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.013 Score=60.90 Aligned_cols=119 Identities=8% Similarity=0.063 Sum_probs=88.3
Q ss_pred cCCChhHHHHHHHHHHhcCChhHHHHHHccCCC-C-----CcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhH
Q 044169 148 VCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPY-L-----DIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTY 221 (742)
Q Consensus 148 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 221 (742)
.+.+......+++......+++++..++-+... + -..+..++|+.|.+.|..+.++++++.=...|+-||..|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 345555666677777777777778777766542 1 1234568888888888888888888888888888888888
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 044169 222 STMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKC 266 (742)
Q Consensus 222 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (742)
+.++..+.+.|++..|.++...|+..+...+..++..-+.++.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888777666666665545444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0078 Score=48.73 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=65.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHchhCCC-CCChhhHHHHHHHHccCC--------ChHHHHHHHHHHHHhCCCCChhHHH
Q 044169 187 NCLLAGYAKNALFDQAFSFFLKLDGIDV-QPNHYTYSTMLAICGSLS--------AIDEGKQLHAQTMKLQYLSKTAVSN 257 (742)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 257 (742)
...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455666677999999999999999999 899999999998877543 3456788899999999999999999
Q ss_pred HHHHHHHh
Q 044169 258 ALLTMYIK 265 (742)
Q Consensus 258 ~li~~~~~ 265 (742)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.037 Score=60.01 Aligned_cols=84 Identities=13% Similarity=0.033 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhc--CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccEEEEcCEEEEEEeCCCCCCCh
Q 044169 606 LKMAEFISKQILEL--DPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEM 683 (742)
Q Consensus 606 ~~~a~~~~~~~~~~--~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 683 (742)
...+.+..++...+ +|.++.+|..++-.+...|++++|...++++.+.... ...| .....+....+.+.++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps---~~a~----~~lG~~~~~~G~~~eA 472 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS---WLNY----VLLGKVYELKGDNRLA 472 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---HHHH----HHHHHHHHHcCCHHHH
Confidence 34555666666564 6778889999999999999999999999999887731 1122 2223334455678888
Q ss_pred HHHHHHHHHHHHH
Q 044169 684 PKVYEKLKQLMQQ 696 (742)
Q Consensus 684 ~~~~~~~~~l~~~ 696 (742)
.+.|.+...+...
T Consensus 473 ~~~~~~A~~L~P~ 485 (517)
T PRK10153 473 ADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHhcCCC
Confidence 8888887766543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.42 Score=48.27 Aligned_cols=85 Identities=13% Similarity=0.147 Sum_probs=55.4
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc
Q 044169 464 EAYNKCGSWEDAERVFSQLTA-------ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHS 535 (742)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~ 535 (742)
+...+.|.+.+|.+.+.+... ++...|.....+..+.|+.++|+.--++..+ +.|.. ..+..-..++...
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHH
Confidence 345677888888888877652 2334566666677788888888888777765 33332 1233333455667
Q ss_pred CcHHHHHHHHHHhHH
Q 044169 536 GLVQDGQKVFESMVK 550 (742)
Q Consensus 536 g~~~~a~~~~~~m~~ 550 (742)
++|++|.+-++...+
T Consensus 335 e~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHh
Confidence 788888888877755
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0092 Score=61.92 Aligned_cols=118 Identities=9% Similarity=0.044 Sum_probs=81.0
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHhccCC-C-----CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHH
Q 044169 250 LSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ-R-----NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFT 323 (742)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 323 (742)
+.+......+++......+++++..++.+... + -..+..++++.|...|..++++.++..=...|+-||..|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 33444455555555555566666666555433 1 12345678888888888888888888888888888888888
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Q 044169 324 VALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGL 367 (742)
Q Consensus 324 ~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~ 367 (742)
.+|..+.+.|++..|.++...|...+.-.+..++.--+..+.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888887777666655555545444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0099 Score=59.62 Aligned_cols=85 Identities=19% Similarity=0.114 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccEEEEcCE
Q 044169 590 APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNK 669 (742)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~ 669 (742)
..++..+...|.+.+++..|++..+++++++|+|...+..-+.+|...|+++.|+..|+++.+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--------------- 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--------------- 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC---------------
Confidence 45677788889999999999999999999999999999999999999999999999999998644
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHHHHHc
Q 044169 670 IYRFFSQNKSHSEMPKVYEKLKQLMQQIEDI 700 (742)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~ 700 (742)
|....+..++..+.+++++.
T Consensus 322 -----------P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 322 -----------PSNKAARAELIKLKQKIREY 341 (397)
T ss_pred -----------CCcHHHHHHHHHHHHHHHHH
Confidence 23455666777777776654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.094 Score=49.32 Aligned_cols=137 Identities=12% Similarity=0.130 Sum_probs=102.6
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHH-----HHH
Q 044169 388 SWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVG-----SSL 462 (742)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~-----~~l 462 (742)
..+.++..+.-.|.+.-.+..+++.++...+.++.....+.+.-.+.|+.+.|...++...+..-..+.... ...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345677777778888889999999998777778888888999999999999999999988765433333333 333
Q ss_pred HHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 044169 463 IEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFL 526 (742)
Q Consensus 463 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 526 (742)
...|.-.+++.+|...|.++. ..|++.-|.-.-+..-.|+..+|++.++.|.+. .|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 445666788899999998887 345556666555566678999999999999984 66665444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.087 Score=52.78 Aligned_cols=110 Identities=17% Similarity=0.276 Sum_probs=50.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHc-CCHHHHHHHHHHHHHc----CCCCCH--HHHHHHHHHHhc
Q 044169 462 LIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQN-GRARKAIILFEKMVVE----GIRPTN--STFLAVLSACSH 534 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~~--~t~~~ll~a~~~ 534 (742)
.++.|...|++..|-+++.+ +...|-.. |++++|++.|++..+. | .+.. ..+..+...+.+
T Consensus 100 A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 34455666666665554433 34455555 6666666666665432 2 1111 234455555666
Q ss_pred cCcHHHHHHHHHHhHHhcC----CCCcHH-HHHHHHHHHhhcCCHHHHHHHHHh
Q 044169 535 SGLVQDGQKVFESMVKEYG----ILPEEA-HYSCMVDLLGRAGKLEIALIFISN 583 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~----~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 583 (742)
.|++++|.++|+++....- .+.+.. .+-..+-++...|+...|.+.+++
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666666544210 011111 122223344455666666666554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.27 Score=52.22 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=29.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
+...+..-+.+...+.-|-++|..|-. ..+++++....|++++|..+-++.+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCc
Confidence 344444444455555666666666521 2345666666777777777666655
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=1.1 Score=48.42 Aligned_cols=88 Identities=13% Similarity=0.132 Sum_probs=44.0
Q ss_pred CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHH-----
Q 044169 418 ACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNS----- 492 (742)
Q Consensus 418 ~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----- 492 (742)
+-+....-.+..++...|.-++|.+.|-+. + .|. +.+..+....++.+|.++-+...-|.+.+.-+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaq 919 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQ 919 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 334445555666666666666665554322 1 111 23445555666666666666555443332211
Q ss_pred ---------HHHHHHHcCCHHHHHHHHHHHH
Q 044169 493 ---------MIKAYSQNGRARKAIILFEKMV 514 (742)
Q Consensus 493 ---------li~~~~~~g~~~~A~~~~~~m~ 514 (742)
-|.-+.+.|++-+|-+++.+|-
T Consensus 920 ll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 920 LLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 1233444555555555555554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0069 Score=62.19 Aligned_cols=66 Identities=18% Similarity=0.002 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 588 PTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA---VYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
.+...|+.+..+|.+.|++++|+..++++++++|++.. +|..++.+|...|+.++|.+.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35778999999999999999999999999999998874 4999999999999999999999888875
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.021 Score=52.41 Aligned_cols=98 Identities=17% Similarity=0.333 Sum_probs=74.7
Q ss_pred HHHHHhc--CCCCchHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC------------
Q 044169 476 ERVFSQL--TAADVVSWNSMIKAYSQ-----NGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSG------------ 536 (742)
Q Consensus 476 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g------------ 536 (742)
...|+.. ...+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445544 35566677777777764 4667777778889999999999999999998776521
Q ss_pred ----cHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCH
Q 044169 537 ----LVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKL 574 (742)
Q Consensus 537 ----~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 574 (742)
+-+-|++++++|. .+|+.||.+++..+++.+++.+..
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccHH
Confidence 2467899999994 589999999999999999887753
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.013 Score=57.35 Aligned_cols=61 Identities=11% Similarity=0.007 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 592 IWRPLFAACRCHSDLKMAEFISKQILELDPDD---AAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
.+--+..++...|+++.|...|+++++..|++ +.++..++.+|...|++++|.++++.+.+
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444445555555555555555555555543 33334445555555666666666555543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0098 Score=54.56 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=46.0
Q ss_pred CChHHHHHHHHHchhCCCCCChhhHHHHHHHHccC----------------CChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 044169 197 ALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSL----------------SAIDEGKQLHAQTMKLQYLSKTAVSNALL 260 (742)
Q Consensus 197 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li 260 (742)
|..+=....+..|.+.|+.-|..+|+.||+.+=+. .+-+-|.+++++|...|+.||..++..|+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 44444445555566666666666666666555431 23456778888888888888888888888
Q ss_pred HHHHhCCC
Q 044169 261 TMYIKCGM 268 (742)
Q Consensus 261 ~~~~~~g~ 268 (742)
+.+++.+.
T Consensus 146 ~iFG~~s~ 153 (228)
T PF06239_consen 146 NIFGRKSH 153 (228)
T ss_pred HHhccccH
Confidence 87765543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.41 Score=46.56 Aligned_cols=55 Identities=13% Similarity=0.021 Sum_probs=28.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHH
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKLEIALIFIS 582 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (742)
+..-|.+.|.+..|..-++.+++++.-.|. .+....++++|...|..++|.+...
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 334455555555555555555554432222 2244455566666666666655544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.017 Score=48.71 Aligned_cols=86 Identities=20% Similarity=0.080 Sum_probs=54.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC---CC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHH
Q 044169 564 MVDLLGRAGKLEIALIFISNLP---IK-PT-APIWRPLFAACRCHSDLKMAEFISKQILELDPD---DAAVYVTLSNMYA 635 (742)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~---~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~ 635 (742)
+..++-..|+.++|+.+|++.. .. ++ ...+-.+.+.+...|++++|..++++.++..|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 3445556666666666666532 11 11 234555666677777777777777777777666 5555666667777
Q ss_pred hcCCHHHHHHHHHH
Q 044169 636 EAGLQADAEEQRKL 649 (742)
Q Consensus 636 ~~g~~~~A~~~~~~ 649 (742)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77777777776543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.70 E-value=1.3 Score=48.33 Aligned_cols=323 Identities=13% Similarity=0.073 Sum_probs=165.2
Q ss_pred HHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC---hhHHHHHHccCCC--CCcccHHHHHHHHHhCC
Q 044169 123 VLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGD---IKSMVAVVKQMPY--LDIASCNCLLAGYAKNA 197 (742)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g 197 (742)
+++.+...+.+..|.++-..+-..-... ..++.....-+.+..+ -+-+..+-+++.. .+.++|..+.+--...|
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 4555566677777777776654332222 5677777777776633 2333444444544 56678888888778889
Q ss_pred ChHHHHHHHHHchhCCCC----CChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHH
Q 044169 198 LFDQAFSFFLKLDGIDVQ----PNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAE 273 (742)
Q Consensus 198 ~~~~A~~~~~~m~~~~~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 273 (742)
+++-|..+++.=...+-. .+..-+...+.-+...|+.+...+++-.+...- +...+. .-..+...|.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~------~~l~~~p~a~ 592 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLF------MTLRNQPLAL 592 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHH------HHHHhchhhh
Confidence 999888887654333211 133345556666667777777766666655431 011111 0111223334
Q ss_pred HHHhccCC-CCcchHHHHHHHHHhCCCcchHHHHHHHH------HHCCCCCCHHHHHHHHHHHhccCChhH-HHHHHHH-
Q 044169 274 SVFEGLVQ-RNVISWTAIINGFKQHGDYEKPLRLVCLM------REDGIDPNEYTFTVALASCASLRNSHM-GYMFHAQ- 344 (742)
Q Consensus 274 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~i~~~- 344 (742)
.+|.+..+ .|..+ +- .+.+.++-.+++..|..= ...|..|+..+ .-.+|++.....- ++.+-++
T Consensus 593 ~lY~~~~r~~~~~~---l~-d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~---~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 593 SLYRQFMRHQDRAT---LY-DFYNQDDNHQALASFHLQASYAAETIEGRIPALKT---AANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred HHHHHHHHhhchhh---hh-hhhhcccchhhhhhhhhhhhhhhhhhcccchhHHH---HHHHHhhhhhhhhHHHHHHHHH
Confidence 44433322 11111 11 111222222222211110 01233333333 3334444433111 1111111
Q ss_pred --------HH-HhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHc
Q 044169 345 --------VI-KRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN 415 (742)
Q Consensus 345 --------~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 415 (742)
+. +.|......+.+--+.-+...|+..+|.++-.+.. -||-..|---+.+++..+++++-+++-+.+.
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAkskk-- 742 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKSKK-- 742 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhccC--
Confidence 11 12333333344444555666677777777777776 6676677667777777777776665554432
Q ss_pred CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044169 416 DAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERV 478 (742)
Q Consensus 416 g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 478 (742)
.+..|.....+|.+.|+.++|...+..+.. .. -.+.+|.++|++.+|.++
T Consensus 743 ----sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 743 ----SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred ----CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHH
Confidence 245566666777777777777666554321 11 355667777777666654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.029 Score=45.52 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=64.2
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHcCC-CCChHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHhCCCCchhHHH
Q 044169 390 NAQIAGFFRNQKTEEAIEAFSQMVRNDA-ACDEFTYSSILKACSLLP--------SLATCEQIHSRIVKSKFESNVHVGS 460 (742)
Q Consensus 390 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~i~~~~~~~~~~~~~~~~~ 460 (742)
...|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. .+.....+++.+...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666777999999999999999999 899999999998877643 2345667788888888999999999
Q ss_pred HHHHHHHh
Q 044169 461 SLIEAYNK 468 (742)
Q Consensus 461 ~li~~~~~ 468 (742)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88887664
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.004 Score=41.93 Aligned_cols=42 Identities=31% Similarity=0.464 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044169 591 PIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSN 632 (742)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 632 (742)
.+|..+..++...|++++|++.++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999998887764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0087 Score=45.71 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=50.9
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 044169 565 VDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVT 629 (742)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 629 (742)
..+|.+.+++++|++.++++. ..| ++..|......+.+.|++++|.+.++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 356778888888888888764 444 56677778888899999999999999999999977655443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.073 Score=53.22 Aligned_cols=152 Identities=13% Similarity=0.076 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----HHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCC-CCcHH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKM----VVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKE---YGI-LPEEA 559 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~-~p~~~ 559 (742)
.|..|...|.-.|+++.|+..-+.- .+.|-+... ..+..+.+++.-.|+++.|.+.|+....- .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555566667777776654432 222322222 34666677777777777777777654320 111 11223
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC-Cch
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNLP--------IKPTAPIWRPLFAACRCHSDLKMAEFISKQILEL-----DPD-DAA 625 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~-~~~ 625 (742)
+..+|...|.-..++++|+.++.+-. .-....++-+|..++...|+.++|..+.++.++. +|. ...
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 44566777777777788877765421 1123456677888888888888888888777663 221 223
Q ss_pred hHHHHHHHHHhcCCH
Q 044169 626 VYVTLSNMYAEAGLQ 640 (742)
Q Consensus 626 ~~~~l~~~y~~~g~~ 640 (742)
.-..|.+.-...|.-
T Consensus 357 ar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 357 ARDNLSDLILELGQE 371 (639)
T ss_pred hhhhhHHHHHHhCCC
Confidence 344555555555543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.28 Score=50.05 Aligned_cols=159 Identities=15% Similarity=0.090 Sum_probs=90.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-------CchHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044169 461 SLIEAYNKCGSWEDAERVFSQLTAA-------DVVSWNSMIKAYSQ---NGRARKAIILFEKMVVEGIRPTNSTFLAVLS 530 (742)
Q Consensus 461 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 530 (742)
.++-.|-...+++...++.+.+... ....-....-++.+ .|+.++|++++..+....-.++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3344466666666666666666532 11111223344455 6777777777777555555666677766665
Q ss_pred HHhc---------cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHH----HHHHHH---Hh-C----CC--C
Q 044169 531 ACSH---------SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLE----IALIFI---SN-L----PI--K 587 (742)
Q Consensus 531 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~----~~--~ 587 (742)
.|-. ....++|+..|.+. +.+.|+...--.++..+...|... +..++- .. . .. .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 4321 22366777777654 445555443333333444444321 222221 11 0 01 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 588 PTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
.|-=.+.+++.++.-.||.+.|.+.++++..+.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 33444577888999999999999999999999874
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.54 E-value=1 Score=45.13 Aligned_cols=153 Identities=12% Similarity=0.146 Sum_probs=77.8
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044169 392 QIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLL-PSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCG 470 (742)
Q Consensus 392 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 470 (742)
.+..|...|++..|-..+.++ ...|... |+++.|.+.|....+ .|...|
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~---------------~y~~e~ 149 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAE---------------LYEQEG 149 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHH---------------HHHHTT
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHH---------------HHHHCC
Confidence 345666666666666555543 3345555 677777766665543 233333
Q ss_pred CHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHH-HHHHHHHHHhccCcHHHHHHH
Q 044169 471 SWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRP-----TNS-TFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 471 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-t~~~ll~a~~~~g~~~~a~~~ 544 (742)
....+..+ +..+...+.+.|++++|.++|++....-... +.. .|...+-++...|++..|.+.
T Consensus 150 ~~~~a~~~-----------~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~ 218 (282)
T PF14938_consen 150 SPHSAAEC-----------LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKA 218 (282)
T ss_dssp -HHHHHHH-----------HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ChhhHHHH-----------HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33333322 2335566677777777777777766532211 111 222233345556777777777
Q ss_pred HHHhHHh-cCCCCc--HHHHHHHHHHHhh--cCCHHHHHHHHHhCC
Q 044169 545 FESMVKE-YGILPE--EAHYSCMVDLLGR--AGKLEIALIFISNLP 585 (742)
Q Consensus 545 ~~~m~~~-~~~~p~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 585 (742)
+++.... .++..+ ......|++++-. ...+++|+.-|+.+.
T Consensus 219 ~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 219 LERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 7776432 122222 2345566666643 335667777777665
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.28 Score=46.26 Aligned_cols=133 Identities=12% Similarity=-0.005 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc----CCCCcHHHHHHHH
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEY----GILPEEAHYSCMV 565 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~~~~~~~l~ 565 (742)
-++++..+.-.|.+.-.+.++++.++..-+-+......+.+.-.+.|+.+.|..+|+...+.. ++.-...+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345666666677888888888888886545566777888888888999999999998765432 2333333444455
Q ss_pred HHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 566 DLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
..|.-++++.+|...+.+++ .+.|+...|+-.-+..-.|+...|.+..+.+.+..|.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 56777778888888888776 2234555555555555677888888888888888885
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.072 Score=52.22 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=61.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHH
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP----TAPIWRPLFA 598 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~ 598 (742)
|...+....+.|++++|...|+.+.+.+.-.+- ...+..+..+|...|++++|...|+.+. ..| ....+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 443333334456666666666666653311110 2344556667777777777777766653 112 2444555566
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCch
Q 044169 599 ACRCHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
.+...|+.+.|...++++++..|++..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 677888889999999998888886543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.52 Score=44.49 Aligned_cols=161 Identities=18% Similarity=0.201 Sum_probs=87.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhc-
Q 044169 464 EAYNKCGSWEDAERVFSQLTA--AD----VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN--STFLAVLSACSH- 534 (742)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~- 534 (742)
..+...|++++|.+.|+.+.. |+ ..+.-.++.++.+.|++++|...+++.++. -|+. .-+...+.+.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHH
Confidence 344556777777777776651 21 124455667777778888888888777764 3433 222222222211
Q ss_pred ------------cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHH
Q 044169 535 ------------SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPI--WRPLFAAC 600 (742)
Q Consensus 535 ------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~ 600 (742)
.+...+|...|+.++ .-|=......+|...+..+. +... --.+...|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li----------------~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELI----------------KRYPNSEYAEEAKKRLAELR---NRLAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHH----------------HH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHH----------------HHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 111223344444333 33333444445544444332 1111 11234458
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCHHHHHH
Q 044169 601 RCHSDLKMAEFISKQILELDPDDAA---VYVTLSNMYAEAGLQADAEE 645 (742)
Q Consensus 601 ~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~A~~ 645 (742)
.+.|.+..|..-++.+++..|+.+. +...++.+|.+.|..+.|..
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 8899999999999999999997544 56778889999999885543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.011 Score=45.85 Aligned_cols=60 Identities=18% Similarity=0.109 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 592 IWRPLFAACRCHSDLKMAEFISKQILEL----DPD---DAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
+++.+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555566666666666666666543 221 24577888888888888888888887764
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.19 E-value=1.8 Score=44.43 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=58.6
Q ss_pred HHHHhCCCCC----CHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 579 IFISNLPIKP----TAPIWRPLFAA--CRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 579 ~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
.++++....| +...-|.|..| ...+|++.++.-...-+.+..| ++.+|..+|-......+|++|..++..+.
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3344444333 45566777777 5789999999999999999999 99999999999999999999999997653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.04 E-value=2.1 Score=43.82 Aligned_cols=85 Identities=5% Similarity=-0.141 Sum_probs=61.4
Q ss_pred CCCccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHH
Q 044169 57 KRAGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELG 136 (742)
Q Consensus 57 ~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 136 (742)
+.|..+|- .++.-| -..|..++..+.+++|..--+ .-..+|..-+++-....++...
T Consensus 39 PtnI~S~f-qLiq~~--------~tq~s~~~~re~yeq~~~pfp--------------~~~~aw~ly~s~ELA~~df~sv 95 (660)
T COG5107 39 PTNILSYF-QLIQYL--------ETQESMDAEREMYEQLSSPFP--------------IMEHAWRLYMSGELARKDFRSV 95 (660)
T ss_pred chhHHHHH-HHHHHH--------hhhhhHHHHHHHHHHhcCCCc--------------cccHHHHHHhcchhhhhhHHHH
Confidence 44677898 899888 888888888999999875322 3456677777776677788888
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 044169 137 RRYHALITKTAVCGDQFVTASLVNMYAKCG 166 (742)
Q Consensus 137 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 166 (742)
..++.+.++..+ +...|...++--.+.+
T Consensus 96 E~lf~rCL~k~l--~ldLW~lYl~YIRr~n 123 (660)
T COG5107 96 ESLFGRCLKKSL--NLDLWMLYLEYIRRVN 123 (660)
T ss_pred HHHHHHHHhhhc--cHhHHHHHHHHHHhhC
Confidence 888888877654 4566766666444433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=2.3 Score=42.87 Aligned_cols=222 Identities=15% Similarity=0.163 Sum_probs=119.4
Q ss_pred HhCCCHHHHHHHHHhc-CCCC-ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcC-CCCChH--HHHHHHHHhcC---CCC
Q 044169 365 SGLGEIWEAKKQLKEM-GKSA-SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRND-AACDEF--TYSSILKACSL---LPS 436 (742)
Q Consensus 365 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~---~g~ 436 (742)
.+.|..+.|...-++. +..| -...+...+...|..|+++.|+++++.-.... +.++.. .-..|+.+-.. ..+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 3566777666666555 2233 34567888899999999999999988765532 344432 12222222111 123
Q ss_pred HHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044169 437 LATCEQIHSRIVKSKFESNVHV-GSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVV 515 (742)
Q Consensus 437 ~~~a~~i~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 515 (742)
...|...-.+..+ +.||..- -..-...|.+.|++.++-.+++.+-+..+..--..+..+.+.|+. ++.-+++...
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdt--a~dRlkRa~~ 320 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDT--ALDRLKRAKK 320 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCc--HHHHHHHHHH
Confidence 3444444333333 3444321 222345677788888888887777532222222223333444442 3333333221
Q ss_pred -cCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHH
Q 044169 516 -EGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA-GKLEIALIFISNLPIKPTAPI 592 (742)
Q Consensus 516 -~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~ 592 (742)
..++||. .....+..+-...|++..|..--+... ...|....|..|.+.-... |+-.++...+-+....|..+.
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 1256655 455666666667777777666555442 3456666777777665444 777777777765543343333
Q ss_pred H
Q 044169 593 W 593 (742)
Q Consensus 593 ~ 593 (742)
|
T Consensus 398 W 398 (531)
T COG3898 398 W 398 (531)
T ss_pred c
Confidence 3
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.14 Score=51.57 Aligned_cols=137 Identities=12% Similarity=-0.011 Sum_probs=97.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCC
Q 044169 494 IKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGK 573 (742)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 573 (742)
...|.+.|++..|...|++.+.. +.. ...-+.++...... .-...+..+.-+|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~~-~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LEY-RRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hhc-cccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 45677777788887777776642 000 01111122211111 112356778889999999
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH-HHHHHHH
Q 044169 574 LEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA-EEQRKLM 650 (742)
Q Consensus 574 ~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A-~~~~~~m 650 (742)
+.+|++.-++.. .++|.-..---..+|...|+++.|+..|+++++++|+|..+-..|+.+-.+...+.+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887754 3456777767778899999999999999999999999999999999888877776655 7788888
Q ss_pred Hh
Q 044169 651 KM 652 (742)
Q Consensus 651 ~~ 652 (742)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 64
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.79 E-value=1.3 Score=47.35 Aligned_cols=211 Identities=15% Similarity=0.152 Sum_probs=100.9
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHH
Q 044169 241 HAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEY 320 (742)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 320 (742)
++++.+.|-.|+... +...++-.|++.+|.++|. ++|....|+++|..|+--+
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~G~enRAlEmyTDlRMFD------ 675 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------RSGHENRALEMYTDLRMFD------ 675 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------HcCchhhHHHHHHHHHHHH------
Confidence 445666665566543 3455666788888887775 4566666666666654210
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC
Q 044169 321 TFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQ 400 (742)
Q Consensus 321 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g 400 (742)
..+-+...|..++-+.+.+.--+... +..--.+-..++...|+.++|..+.-. +|
T Consensus 676 ----~aQE~~~~g~~~eKKmL~RKRA~WAr--~~kePkaAAEmLiSaGe~~KAi~i~~d-------------------~g 730 (1081)
T KOG1538|consen 676 ----YAQEFLGSGDPKEKKMLIRKRADWAR--NIKEPKAAAEMLISAGEHVKAIEICGD-------------------HG 730 (1081)
T ss_pred ----HHHHHhhcCChHHHHHHHHHHHHHhh--hcCCcHHHHHHhhcccchhhhhhhhhc-------------------cc
Confidence 11222333333333333222111100 000001223344455555555444322 22
Q ss_pred CcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 044169 401 KTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFS 480 (742)
Q Consensus 401 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 480 (742)
-.+-+.++-+++- ..+..+...+..-+.+...+..|-++|..+-+. ..++++....+++.+|..+-+
T Consensus 731 W~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe 797 (1081)
T KOG1538|consen 731 WVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAE 797 (1081)
T ss_pred HHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhh
Confidence 2222222222221 112233333333444455555566666555332 245566666677777777666
Q ss_pred hcCC--CCch-----------HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 044169 481 QLTA--ADVV-----------SWNSMIKAYSQNGRARKAIILFEKMVVE 516 (742)
Q Consensus 481 ~~~~--~~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m~~~ 516 (742)
+.++ +|+. -|.---.+|.+.|+-.+|.++++++...
T Consensus 798 ~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 798 KHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 6652 3332 1111224566777778888887776543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.7 Score=38.81 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=84.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 044169 498 SQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIA 577 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 577 (742)
.-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+-+.+ ..+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHH
Confidence 4467888888888887752 34444555555444455556666666666332222 223444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044169 578 LIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEIS 656 (742)
Q Consensus 578 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 656 (742)
...+-.+. .+..-....+.+..++|..+.-.+++..+.+.+..+|....-++.+|.+.|+..++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33333322 234445566777888899999999999888654448999999999999999999999999999999873
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.25 Score=42.54 Aligned_cols=89 Identities=16% Similarity=0.085 Sum_probs=56.8
Q ss_pred HHHHhhcCCHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHh
Q 044169 565 VDLLGRAGKLEIALIFISNLP----IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA---VYVTLSNMYAE 636 (742)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~ 636 (742)
.....+.|++++|.+.|+.+. ..| ....-..++.++.+.+++++|...+++.++++|.++. ++...+-++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 334456777777777777664 222 2345566788888999999999999999999887654 23333434444
Q ss_pred cCC---------------HHHHHHHHHHHHhC
Q 044169 637 AGL---------------QADAEEQRKLMKMK 653 (742)
Q Consensus 637 ~g~---------------~~~A~~~~~~m~~~ 653 (742)
... ..+|..-|+...++
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 433 55666666655543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.076 Score=47.15 Aligned_cols=61 Identities=25% Similarity=0.209 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 591 PIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
.....++..+...|+++.|...+++++..+|-|...|..++.+|...|+..+|.+.++.+.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3456677778899999999999999999999999999999999999999999999998875
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.46 Score=46.27 Aligned_cols=102 Identities=15% Similarity=0.084 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcC---CHHHHHHHHHhCC-CCC-CHHHHH
Q 044169 520 PTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAG---KLEIALIFISNLP-IKP-TAPIWR 594 (742)
Q Consensus 520 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~p-~~~~~~ 594 (742)
-|...|..|..+|...|+.+.|...|....+-.| ++...+..+..++..+. ...++.++|+++. ..| |..+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3446677777777777777777777777765333 34445555555544332 3456777777754 344 455555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 595 PLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 595 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
.|...+...|++.+|...++.+++..|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 56666888888888888888888877643
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.23 Score=49.08 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=22.5
Q ss_pred HHhCCCcHHHHHHHHHHhHcC--CCCChHHHHHHHHHhcCCCCHHHHHH
Q 044169 396 FFRNQKTEEAIEAFSQMVRND--AACDEFTYSSILKACSLLPSLATCEQ 442 (742)
Q Consensus 396 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~ 442 (742)
+.++.+.++|+..+.+-...- ..-.-.++..+..+.++.|.++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 344566666666666544321 11122344455555555555554443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.42 E-value=3.8 Score=42.15 Aligned_cols=135 Identities=15% Similarity=0.100 Sum_probs=106.1
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHH
Q 044169 486 DVVSWNSMIKAYSQNGRARKAIILFEKMVVEG-IRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCM 564 (742)
Q Consensus 486 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 564 (742)
-...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++. |+...|.++|+.=.+. ++.+.......
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34567788888888888899999999999998 66777888888886664 7888999999876542 22333344567
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 565 VDLLGRAGKLEIALIFISNLP--IKPT--APIWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
+.-+.+-++-+.|..+|+... ...+ ...|..++..-...|+...+..+-+++.+.-|+.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 788889999999999998543 2223 6789999999999999999999999999998853
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.022 Score=44.13 Aligned_cols=27 Identities=15% Similarity=-0.031 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044169 592 IWRPLFAACRCHSDLKMAEFISKQILE 618 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 618 (742)
++..+...+...|++++|++.++++++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555555666666666666665554
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.23 Score=42.32 Aligned_cols=50 Identities=14% Similarity=0.315 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 517 GIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 517 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
...|+..+..+++.+|+..|++..|+++.+...+.++++-+..+|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 35677777777777777777777777777777777777666667766664
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.30 E-value=5.1 Score=42.98 Aligned_cols=182 Identities=14% Similarity=0.110 Sum_probs=122.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLTAA---DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSA 531 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 531 (742)
+..+|..-++--.+.|+.+.+.-+|++..-| =...|--.+.-....|+.+-|..++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567777777778888888888888887633 2235555555555558888888887776665333333333333334
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCcHH-HHHHHHHHHhhcCCHHHHH---HHHHhCC-CCCCHHHHHH----HHHH-HH
Q 044169 532 CSHSGLVQDGQKVFESMVKEYGILPEEA-HYSCMVDLLGRAGKLEIAL---IFISNLP-IKPTAPIWRP----LFAA-CR 601 (742)
Q Consensus 532 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~p~~~~~~~----l~~~-~~ 601 (742)
+-..|+...|..+++.+..+ . |+.. .-..-+....+.|..+.+. +++.... .+-+...... .... +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 55678999999999999764 3 5543 3344556777889888888 5555432 2222222222 2222 45
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 044169 602 CHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGL 639 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 639 (742)
..++.+.|..++.++.+..|++...|..+++.....+-
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 67889999999999999999999999999998777663
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.20 E-value=3 Score=39.73 Aligned_cols=196 Identities=19% Similarity=0.119 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 044169 457 HVGSSLIEAYNKCGSWEDAERVFSQLT-----AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLS- 530 (742)
Q Consensus 457 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~- 530 (742)
.........+...+.+..+...+.... ......+..+...+...+++..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 444455555556666666655555442 22333444555555556666666666666665322221 11222222
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCC--CCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCC
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGI--LPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP--TAPIWRPLFAACRCHSD 605 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~ 605 (742)
.+...|+++.+...+..... ..- ......+......+...++.++|...+.+.. ..+ ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56666677777777666632 111 1122233333444556667777777766543 222 24556666666777777
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 606 LKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
++.+...+....+..|.....+..+...+...|.++++...+.......
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777777555566666666666666777777766665433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.65 Score=41.12 Aligned_cols=93 Identities=8% Similarity=-0.109 Sum_probs=66.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCC
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSD 605 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~ 605 (742)
..--+...|++++|..+|+-+.. --..+...+..|..++...|++++|+..|.... ...|+...-.....+...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 33345677899999999988754 222345567788888888999999998887532 23344445556667788899
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 044169 606 LKMAEFISKQILELDPDD 623 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~p~~ 623 (742)
.+.|...++.+++ .|.+
T Consensus 121 ~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 121 AAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHHHHHHHHh-Ccch
Confidence 9999999988888 4543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.19 Score=41.92 Aligned_cols=88 Identities=20% Similarity=0.137 Sum_probs=66.7
Q ss_pred HHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC---chhHHHHHHHHHhcCCH
Q 044169 567 LLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELD-PDD---AAVYVTLSNMYAEAGLQ 640 (742)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~y~~~g~~ 640 (742)
++...|+++.|++.|.+.. .+.....||.-..+++-+|+.++|..-+++++++. |.. ...|..-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 5667788888888887643 23457778888888888888888888888888874 332 23577778888888999
Q ss_pred HHHHHHHHHHHhCC
Q 044169 641 ADAEEQRKLMKMKE 654 (742)
Q Consensus 641 ~~A~~~~~~m~~~~ 654 (742)
++|..-|...-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 99888888776655
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=4.1 Score=42.59 Aligned_cols=157 Identities=10% Similarity=0.141 Sum_probs=83.4
Q ss_pred hHH--HHHHHHHHHc-----CCHHHHHHHHHHHH-HcCCCCCHH-HHHHHHHHHhc---------cCcHHHHHHHHHHhH
Q 044169 488 VSW--NSMIKAYSQN-----GRARKAIILFEKMV-VEGIRPTNS-TFLAVLSACSH---------SGLVQDGQKVFESMV 549 (742)
Q Consensus 488 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~-~~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 549 (742)
..| ...+.+.... ...+.|+.+|.+.. .+.+.|+.. .|..+..++.. .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554431 13457888888887 222567653 34333332211 122344445544444
Q ss_pred HhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh-
Q 044169 550 KEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAV- 626 (742)
Q Consensus 550 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~- 626 (742)
+ --+-|......+..++.-.|+++.|...|++.. ..|| ..+|......+.-.|+.++|.+.+++++++.|.-..+
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 3 122345555556666666666777777776653 4554 4455555555666777777777777777777753322
Q ss_pred -HHHHHHHHHhcCCHHHHHHHH
Q 044169 627 -YVTLSNMYAEAGLQADAEEQR 647 (742)
Q Consensus 627 -~~~l~~~y~~~g~~~~A~~~~ 647 (742)
....+++|+..+ .++|.+++
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHH
Confidence 223333455443 34454443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.90 E-value=8.1 Score=43.15 Aligned_cols=168 Identities=14% Similarity=0.090 Sum_probs=104.5
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHh----hccccchHHHHHHHHHHHHhccCCChhHH
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSY----CSREECLELGRRYHALITKTAVCGDQFVT 155 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 155 (742)
.+...++-|+.+-+.-. .|..+...+... |-+.|++++|.+.+-+.+.. ++|.
T Consensus 345 ~kK~ly~~Ai~LAk~~~------------------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s---- 401 (933)
T KOG2114|consen 345 FKKNLYKVAINLAKSQH------------------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS---- 401 (933)
T ss_pred HHhhhHHHHHHHHHhcC------------------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH----
Confidence 78888888887765532 244444444444 44678888888777555433 2332
Q ss_pred HHHHHHHHhcCChhHHHHHHccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCC
Q 044169 156 ASLVNMYAKCGDIKSMVAVVKQMPY---LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLS 232 (742)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 232 (742)
.+|.-|....++.+-...++.+.+ .+...-+.|+.+|.+.++.++-.++.+.-. .|.. ..-....+..|.+.+
T Consensus 402 -~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 402 -EVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred -HHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 234445555555555555555543 344556788999999999998888877665 3322 122456677777777
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCC
Q 044169 233 AIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQR 282 (742)
Q Consensus 233 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 282 (742)
-+++|..+-..... ...+... .+-..|++++|.+.+..++-+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCCHH
Confidence 77777665544322 2333333 344668899999999988753
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.61 Score=48.50 Aligned_cols=118 Identities=12% Similarity=0.039 Sum_probs=88.0
Q ss_pred cHHHHHHHHHHhHHhcCCCCcHH-HHHHHHHHHhh---------cCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcC
Q 044169 537 LVQDGQKVFESMVKEYGILPEEA-HYSCMVDLLGR---------AGKLEIALIFISNLP-I-KPTAPIWRPLFAACRCHS 604 (742)
Q Consensus 537 ~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~~~~---------~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g 604 (742)
..+.|..+|.+......+.|+.. .|..+..++.. .....+|.++.++.. . ..|+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 45678888888874445666643 45554444322 223456666666543 3 447777777777778888
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 605 DLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 605 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+++.|...++++..++|+.+.++...++...-.|+.++|.+.+++..+..
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 89999999999999999999999999999999999999999998855433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.60 E-value=1.3 Score=43.07 Aligned_cols=121 Identities=13% Similarity=0.133 Sum_probs=81.4
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCCHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRP---LFAACRCHSDLK 607 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~ 607 (742)
.....|+..+|...|+..... .+-+...--.|+++|...|+.+.|..++..++.+-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 455678888888888887652 223345566788888999999999999988874433333333 222233333322
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 608 MAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 608 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+.. .++.-...+|+|...-..|+..|...|+.++|.+.+=.+.+++
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 222 2334455689999999999999999999999998776665543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.58 E-value=2 Score=46.37 Aligned_cols=115 Identities=18% Similarity=0.130 Sum_probs=73.9
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCcHHHHH-HHHHHHhhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHHcCCHH
Q 044169 535 SGLVQDGQKVFESMVKEYGILPEEAHYS-CMVDLLGRAGKLEIALIFISNLPI-K-----PTAPIWRPLFAACRCHSDLK 607 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~l~~~~~~~g~~~ 607 (742)
....+.|.++++.+.+.+ |+...|. --.+.+...|++++|++.|++... + -....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 446677788888776532 4544433 334666777888888888876431 1 12233344555677788888
Q ss_pred HHHHHHHHHHhcCCCCchhH-HHHHHHHHhcCCH-------HHHHHHHHHHHh
Q 044169 608 MAEFISKQILELDPDDAAVY-VTLSNMYAEAGLQ-------ADAEEQRKLMKM 652 (742)
Q Consensus 608 ~a~~~~~~~~~~~p~~~~~~-~~l~~~y~~~g~~-------~~A~~~~~~m~~ 652 (742)
+|...+.++.+...-+...| ...+-+|...|+. ++|.++++++..
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88888888888765444443 3445556777888 888888877753
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.38 Score=47.08 Aligned_cols=159 Identities=13% Similarity=-0.009 Sum_probs=113.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHH----HHHHHHhhcCCH
Q 044169 499 QNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYS----CMVDLLGRAGKL 574 (742)
Q Consensus 499 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~----~l~~~~~~~g~~ 574 (742)
-+|+..+|...++++++. .+.|...+.-.-++|...|+.+.-...++++.- ...+|...|+ .+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888899998875 566667888888899999999888888888764 3355554433 344566789999
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCCHHHHHHHHH
Q 044169 575 EIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPD----DAAVYVTLSNMYAEAGLQADAEEQRK 648 (742)
Q Consensus 575 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~ 648 (742)
++|.+.-++.. ++| |.-.-.++.......|.+.++.++..+--..-.+ -..-|-..+-.|...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999988764 333 5555566667778889999998887765443221 12234455666777899999999998
Q ss_pred HHHhCCCCCCCc
Q 044169 649 LMKMKEISKEPG 660 (742)
Q Consensus 649 ~m~~~~~~~~~~ 660 (742)
.-.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 776555656554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.26 Score=51.08 Aligned_cols=62 Identities=13% Similarity=0.021 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNL-PIKPTA----PIWRPLFAACRCHSDLKMAEFISKQILEL 619 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 619 (742)
...++.+..+|.+.|++++|+..|++. ...|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555566666666666665552 244442 23556666666666666666666666654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.46 E-value=4.4 Score=38.16 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=28.2
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHcCCCC--ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 044169 393 IAGFFRNQKTEEAIEAFSQMVRNDAAC--DEFTYSSILKACSLLPSLATCEQIHSRIVKS 450 (742)
Q Consensus 393 i~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~ 450 (742)
...+.+.|++++|...|+++...-... -....-.++.++-+.|+++.|...++...+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555666666666666665542111 1223334445555555666655555555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.42 Score=45.59 Aligned_cols=101 Identities=16% Similarity=0.226 Sum_probs=79.6
Q ss_pred HHHHHHHhcC--CCCchHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----------
Q 044169 474 DAERVFSQLT--AADVVSWNSMIKAYSQN-----GRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSG---------- 536 (742)
Q Consensus 474 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 536 (742)
..++.|.... ++|-.+|-+.+..+... +.++=....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666666 66777888888877643 566767778899999999999999999999876532
Q ss_pred ------cHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHH
Q 044169 537 ------LVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLE 575 (742)
Q Consensus 537 ------~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 575 (742)
+-+-++.++++| +.+|+.||.++-..|+.++++.|..-
T Consensus 132 F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccH
Confidence 124578999999 55899999999999999999988643
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.39 E-value=4.8 Score=38.24 Aligned_cols=197 Identities=19% Similarity=0.136 Sum_probs=130.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCc-hHHHHHHH-H
Q 044169 422 FTYSSILKACSLLPSLATCEQIHSRIVKS-KFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA--ADV-VSWNSMIK-A 496 (742)
Q Consensus 422 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~ 496 (742)
..+......+...+....+...+...... ........+......+...++...+.+.+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444555555555555555544432 2234445555566666667777777777776653 222 22333333 6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-cHHHHHHHHHHHhhc
Q 044169 497 YSQNGRARKAIILFEKMVVEGIRP----TNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILP-EEAHYSCMVDLLGRA 571 (742)
Q Consensus 497 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~ 571 (742)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+....+ .... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 8888999999999998865 344 223444444556778899999999998865 2333 366788888899999
Q ss_pred CCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 572 GKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 572 g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
++++.|...+.... ..|+ ...+..+...+...++.+.+...+.+.++..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999988764 3444 445555555655777899999999999999885
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.15 Score=45.99 Aligned_cols=89 Identities=16% Similarity=0.026 Sum_probs=67.5
Q ss_pred HHhhcCCHHHHHHHHHhCC-C-CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 044169 567 LLGRAGKLEIALIFISNLP-I-KP-----TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGL 639 (742)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~-~-~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 639 (742)
-+.+.|++++|..-|.+.. . ++ ..+.|..-..+..+.+..+.|+.-..++++++|....++...+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 3455666666666555432 1 11 234455556677888999999999999999999888888888999999999
Q ss_pred HHHHHHHHHHHHhCCC
Q 044169 640 QADAEEQRKLMKMKEI 655 (742)
Q Consensus 640 ~~~A~~~~~~m~~~~~ 655 (742)
+++|++-++++.+...
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999987654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.46 Score=42.08 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH----HhcCCCCcHHH
Q 044169 492 SMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMV----KEYGILPEEAH 560 (742)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 560 (742)
.++..+...|++++|..+.+++.... +-|...|..++.++...|+..+|.++|+.+. ++.|+.|+..+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455556666666666666666531 2234556666666666666666666665543 23466666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.29 E-value=1.7 Score=38.11 Aligned_cols=63 Identities=14% Similarity=0.281 Sum_probs=31.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA-GKLEIALIFISNLPIKPTAPIWRPLFAAC 600 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 600 (742)
...+++.|.+.+.++++..++..+.. +...++.+... ++.+.|.+++.+.. ++..|..++..+
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~ 135 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKAL 135 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 34455566666666666666555411 11222223223 56666666666522 455565555544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.29 E-value=2.9 Score=36.59 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=58.3
Q ss_pred hHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCC
Q 044169 119 FVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNAL 198 (742)
Q Consensus 119 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 198 (742)
....++..+...+.......+++.+.+.+ ..++..++.++..|++.+ .......++. ..+......+++.|.+.+.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCc
Confidence 34566666666677888888888888876 467788999999998764 3444444442 2233445556667777777
Q ss_pred hHHHHHHHHHc
Q 044169 199 FDQAFSFFLKL 209 (742)
Q Consensus 199 ~~~A~~~~~~m 209 (742)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 77777776665
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.28 Score=46.71 Aligned_cols=98 Identities=8% Similarity=0.086 Sum_probs=71.5
Q ss_pred HHHHHccCC--CCCcccHHHHHHHHHhC-----CChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCC-----------
Q 044169 171 MVAVVKQMP--YLDIASCNCLLAGYAKN-----ALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLS----------- 232 (742)
Q Consensus 171 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----------- 232 (742)
.++.|...+ ++|-.+|-+.+..+... +..+=....++.|.+.|+.-|..+|+.+|..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 445666665 57777888888777543 456666777888999999999999999998875532
Q ss_pred -----ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 044169 233 -----AIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGM 268 (742)
Q Consensus 233 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (742)
+-+-+..++++|..+|+.||-.+-..|++++.+.+.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223466777888888888887777777777766654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.05 E-value=12 Score=41.54 Aligned_cols=74 Identities=15% Similarity=0.285 Sum_probs=44.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHS 604 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g 604 (742)
....+..|.+.|-+++-.-++.+| | .++.+|.-.--+.++.++|+++.++ ..|...|..|+..+...-
T Consensus 637 lekA~eiC~q~~~~~E~VYlLgrm----G-----n~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 637 LEKALEICSQKNFYEELVYLLGRM----G-----NAKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKP 704 (846)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHhh----c-----chHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCc
Confidence 344455566666666666666555 2 1233333344455667777777665 558999999999876655
Q ss_pred CHHHHH
Q 044169 605 DLKMAE 610 (742)
Q Consensus 605 ~~~~a~ 610 (742)
.+-.+.
T Consensus 705 e~~~~l 710 (846)
T KOG2066|consen 705 EFIKAL 710 (846)
T ss_pred HHHHHH
Confidence 443333
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.03 E-value=5.3 Score=41.05 Aligned_cols=73 Identities=11% Similarity=0.058 Sum_probs=44.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCCCh------hhHHHHHHHHHh---CCCcHHHHHHHHHHhHcCCCCChHHHHHHHH
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEMGKSASS------VSWNAQIAGFFR---NQKTEEAIEAFSQMVRNDAACDEFTYSSILK 429 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 429 (742)
.++-.|....+++...++.+.+...|+. ..--...-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577777777777777777433321 111123345555 7788888888888666555667777766655
Q ss_pred Hh
Q 044169 430 AC 431 (742)
Q Consensus 430 ~~ 431 (742)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 43
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.71 Score=39.40 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=29.3
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHH
Q 044169 553 GILPEEAHYSCMVDLLGRAGKLEIALIFISNLP----IKPTAPIWRPLFAAC 600 (742)
Q Consensus 553 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~ 600 (742)
...|+..+..+++.+|+..|++..|+++++... .+-+...|..|+.-+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 445666667777777777777777766665432 333455666666544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.85 E-value=2.4 Score=45.83 Aligned_cols=160 Identities=13% Similarity=0.116 Sum_probs=84.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhC-CCCch-----hHHHHHHHHHH----hcCCHHHHHHHHHhcCC--CCchHHH
Q 044169 424 YSSILKACSLLPSLATCEQIHSRIVKSK-FESNV-----HVGSSLIEAYN----KCGSWEDAERVFSQLTA--ADVVSWN 491 (742)
Q Consensus 424 ~~~ll~~~~~~g~~~~a~~i~~~~~~~~-~~~~~-----~~~~~li~~~~----~~g~~~~A~~~~~~~~~--~~~~~~~ 491 (742)
+..+++...-.|+.+.+.+.+....+.+ +.... -.|...+..++ .....+.|.++++.+.. |+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 4455666666778888877777665532 21111 12222222222 23456677777777663 5655554
Q ss_pred HHH-HHHHHcCCHHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHH-H
Q 044169 492 SMI-KAYSQNGRARKAIILFEKMVVEG--I-RPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMV-D 566 (742)
Q Consensus 492 ~li-~~~~~~g~~~~A~~~~~~m~~~g--~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~-~ 566 (742)
-.- ..+...|+.++|++.|++..... . +.....+.-+...+....+|++|.+.|..+.+... .+...|.-+. -
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~--WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK--WSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc--cHHHHHHHHHHH
Confidence 433 34445677777777777654311 1 11122344445556666777777777777765322 2333333222 3
Q ss_pred HHhhcCCH-------HHHHHHHHhCC
Q 044169 567 LLGRAGKL-------EIALIFISNLP 585 (742)
Q Consensus 567 ~~~~~g~~-------~~A~~~~~~~~ 585 (742)
++...|+. ++|.++|.+.+
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 44555555 66666666544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.85 E-value=4.7 Score=42.32 Aligned_cols=102 Identities=13% Similarity=0.132 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCC--HHHHHHHHH
Q 044169 523 STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPI--KPT--APIWRPLFA 598 (742)
Q Consensus 523 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~--~~~~~~l~~ 598 (742)
.+-..+..++.+.|+.++|++.++++.++........+...|+.+|...+.+.++..++.+-.. -|. ...|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 3344566677788999999999999987554333445677899999999999999999987651 233 344555444
Q ss_pred HHHHcCC---------------HHHHHHHHHHHHhcCCCCc
Q 044169 599 ACRCHSD---------------LKMAEFISKQILELDPDDA 624 (742)
Q Consensus 599 ~~~~~g~---------------~~~a~~~~~~~~~~~p~~~ 624 (742)
-.+..++ -..|.++..++.+.+|-.+
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 4443333 1235678888888887533
|
The molecular function of this protein is uncertain. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.13 Score=31.96 Aligned_cols=32 Identities=31% Similarity=0.223 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 591 PIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777777774
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.19 Score=31.22 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 592 IWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
.|..+...+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666777777777777777777777653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.65 E-value=6.5 Score=37.14 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCchhH
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNLP-------IKPTA-PIWRPLFAACRCHSDLKMAEFISKQILE----LDPDDAAVY 627 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~ 627 (742)
.+......|.+..++++|-..|.+-. .-++. ..+.+.+-.+....|+..|+..++.--+ ..|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34445566677777777665554332 11111 1233344445556677788887777554 356677777
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 044169 628 VTLSNMYAEAGLQADAEEQR 647 (742)
Q Consensus 628 ~~l~~~y~~~g~~~~A~~~~ 647 (742)
..|+.+| ..|+.+++.++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 7887776 457777776554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.64 E-value=2.4 Score=45.14 Aligned_cols=152 Identities=13% Similarity=0.074 Sum_probs=87.4
Q ss_pred HhcCCHHHHHHHHH--hcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 044169 467 NKCGSWEDAERVFS--QLT-AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQK 543 (742)
Q Consensus 467 ~~~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 543 (742)
.-.|+++++.+..+ ++. .-+..-.+.++.-+.+.|..+.|+++.+.-. .-| ....+.|+++.|.+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------~rF----eLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD--------HRF----ELALQLGNLDIALE 339 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH--------HHH----HHHHHCT-HHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH--------HHh----HHHHhcCCHHHHHH
Confidence 34567777555444 111 2223446677777778888888887643221 123 23345788888877
Q ss_pred HHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 544 VFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 544 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
+.++. ++...|..|.+...+.|+++-|.+.|.+.. -+..|+-.|...|+.+.-.++.+.+.+.+-
T Consensus 340 ~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-- 404 (443)
T PF04053_consen 340 IAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD-- 404 (443)
T ss_dssp HCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 64332 467788888888888999998888888876 355667777778887777777766655443
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHH
Q 044169 624 AAVYVTLSNMYAEAGLQADAEEQRK 648 (742)
Q Consensus 624 ~~~~~~l~~~y~~~g~~~~A~~~~~ 648 (742)
++....++.-.|+.++..+++.
T Consensus 405 ---~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 ---INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHH
Confidence 2233333444566666665554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.57 E-value=7.2 Score=37.38 Aligned_cols=177 Identities=19% Similarity=0.193 Sum_probs=94.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH--HHHH
Q 044169 456 VHVGSSLIEAYNKCGSWEDAERVFSQLTAA------DVVSWNSMIKAYSQNGRARKAIILFEKMVVE-GIRPTN--STFL 526 (742)
Q Consensus 456 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~t~~ 526 (742)
...|+.-+. -.+.|++++|.+.|+.+... ...+--.++.++.+.+++++|+...++.... +-.||. ..|.
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 344444333 34567777777777777621 1223444555666777777777777776653 222332 2233
Q ss_pred HHHHHHhccC----cHH---HHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH--HHHHH
Q 044169 527 AVLSACSHSG----LVQ---DGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPI--WRPLF 597 (742)
Q Consensus 527 ~ll~a~~~~g----~~~---~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~ 597 (742)
..+.-+.... +.. .|..-|+.++.++ |+.. -..+|...+..+. |... =....
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~Ia 174 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMAIA 174 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHHHH
Confidence 3333222211 112 2223333333221 2211 1112221111111 1111 12344
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 598 AACRCHSDLKMAEFISKQILELDPDDAA---VYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 598 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
..|.+.|.+..|..-++.+++.-|+.+. .+..+..+|...|..++|.+.-+-+..
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 5688999999999999999998776444 466677889999999999888766653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.76 Score=44.20 Aligned_cols=92 Identities=18% Similarity=0.289 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH-HHHHHH
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN----STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEE-AHYSCM 564 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l 564 (742)
|+.-+.. .+.|++..|...|...++. -|+. ..+..|..++...|++++|..+|..+.++++-.|.. +.+-.|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 5544433 3456677777777777764 2222 235556677777777777777777776655444432 445555
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 044169 565 VDLLGRAGKLEIALIFISNL 584 (742)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~ 584 (742)
.....+.|+.++|..+|+++
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 55555555555555555543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.76 Score=44.19 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=66.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC-HHHHHH
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE---EAHYSCMVDLLGRAGKLEIALIFISNLP----IKPT-APIWRP 595 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-~~~~~~ 595 (742)
.|+.-+.. .+.|++..|...|...++.+ +-+ ...+--|..++...|++++|..+|..+. ..|. +..+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 45555544 45577999999998888743 222 2234457788888888888888776543 2232 455566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 044169 596 LFAACRCHSDLKMAEFISKQILELDPDDAAV 626 (742)
Q Consensus 596 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 626 (742)
|.......|+.++|...++++++..|+.+.+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 6666777788888888888888887765543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.37 Score=47.19 Aligned_cols=46 Identities=7% Similarity=0.040 Sum_probs=21.9
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILP-EEAHYSCMVDLLGRAGKLEIALI 579 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 579 (742)
-|.++|.+++|+..|...+ .+.| +..++..-..+|.+..++..|..
T Consensus 106 ~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 4555555555555554432 2223 44444444555555555544443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.83 E-value=3.4 Score=43.33 Aligned_cols=152 Identities=16% Similarity=0.122 Sum_probs=88.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCH
Q 044169 495 KAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKL 574 (742)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 574 (742)
.-.-+..+...-+++-++.++ +.||..+-..++ +--......++.+++++..+. | ...+..- ......|.
T Consensus 176 q~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~- 245 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGH- 245 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccc-
Confidence 333455666777777777776 577774433333 223344578888888877652 1 0000000 00001111
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 575 EIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD--DAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 575 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
..+.+.+-..++-..+-..+...+.+.|..++|++.+..+++..|. +..+...|+..+...+.+.++..++.+-.+
T Consensus 246 --~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 246 --FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred --hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 1111111111223334455667778889999999999988877664 566788889999999999999888888755
Q ss_pred CCCCCC
Q 044169 653 KEISKE 658 (742)
Q Consensus 653 ~~~~~~ 658 (742)
....+.
T Consensus 324 i~lpkS 329 (539)
T PF04184_consen 324 ISLPKS 329 (539)
T ss_pred ccCCch
Confidence 444343
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.81 E-value=8.8 Score=37.57 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=71.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCH
Q 044169 496 AYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKL 574 (742)
Q Consensus 496 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~ 574 (742)
.....|++.+|..+|+...... .-+...-..+..+|...|+.+.|..++..+-.+ ..-+ ......-+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHhcC
Confidence 3345566666666666665531 112234445556666666666666666655221 1111 11112233444444444
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHhcCC
Q 044169 575 EIALIFISNLPIKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELD--PDDAAVYVTLSNMYAEAGL 639 (742)
Q Consensus 575 ~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~ 639 (742)
.+..++-.+....| |...--.+...+...|+.+.|.+.+-.+++.+ -+|..+-..|+.++.-.|.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 44444444443344 44455555556666666666666665555543 2355555666666655553
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.74 E-value=7.1 Score=36.15 Aligned_cols=159 Identities=15% Similarity=0.089 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 488 VSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
..||-|.--+...|+++.|.+.|+...+ +.|.. .+...-.-++.-.|+++-|.+-+...-+...-.|=...|--++.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3555555555566666666666666655 23332 22222222334456666665544443222122222222222221
Q ss_pred HHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CchhHHHHHHHHHhcC
Q 044169 567 LLGRAGKLEIALIFI-SNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD-------DAAVYVTLSNMYAEAG 638 (742)
Q Consensus 567 ~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-------~~~~~~~l~~~y~~~g 638 (742)
+.=+..+|..-+ ++.. ..|..-|...+-.+.-.. . ..+.+++++.+-..+ -..+|..|+.-|...|
T Consensus 178 ---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgk-i-S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGK-I-SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhh-c-cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 222444554333 2222 334444544443322111 0 011122222221111 2458999999999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 044169 639 LQADAEEQRKLMKMKE 654 (742)
Q Consensus 639 ~~~~A~~~~~~m~~~~ 654 (742)
+.++|..+|+......
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999999877543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.68 E-value=2.8 Score=41.27 Aligned_cols=176 Identities=14% Similarity=0.070 Sum_probs=116.0
Q ss_pred HhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHhccCcHH
Q 044169 467 NKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVL----SACSHSGLVQ 539 (742)
Q Consensus 467 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll----~a~~~~g~~~ 539 (742)
-..|++.+|...++++. +.|..+|+--=.+|...|+.+.-...+++.... ..||...|..+- -++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34578888888888876 568888998889999999999999999998865 456664433332 2445789999
Q ss_pred HHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH-------HHHHHHHHHcCCHHHHHHH
Q 044169 540 DGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIW-------RPLFAACRCHSDLKMAEFI 612 (742)
Q Consensus 540 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-------~~l~~~~~~~g~~~~a~~~ 612 (742)
+|++.-++..+ --+.|.-...++...+.-.|++.++.+++.+-...=+ ..| -...-.+...+.++.|+++
T Consensus 193 dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR-QSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh-hhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99998877654 1233455666788889999999999999987651100 111 1111223455889999999
Q ss_pred HHHHH--hcCCCCchhHH---HHHHHHHhcCCHHHHHHH
Q 044169 613 SKQIL--ELDPDDAAVYV---TLSNMYAEAGLQADAEEQ 646 (742)
Q Consensus 613 ~~~~~--~~~p~~~~~~~---~l~~~y~~~g~~~~A~~~ 646 (742)
|++-+ +++.+|..... -+--.....-.|.+-.++
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~l 308 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKL 308 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhh
Confidence 98644 34555664333 233333444444444333
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.68 E-value=21 Score=40.17 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCChhHHHHHHccCCCCCcccHHHH----HHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccC
Q 044169 156 ASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCL----LAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSL 231 (742)
Q Consensus 156 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 231 (742)
..-+++..+..-++-|..+-+.-.. |...-..+ .+-+-+.|++++|...|-+-... +.| ..++.-+...
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 3445666666666666666544322 22222222 23345667777777777655432 122 1344444555
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccC
Q 044169 232 SAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLV 280 (742)
Q Consensus 232 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 280 (742)
.+...-..+++.+.+.|+. +....+.|+.+|.+.++.+.-.++.+...
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 5555555666666666643 34444667777777777777666665544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.44 E-value=2.2 Score=45.36 Aligned_cols=135 Identities=14% Similarity=0.169 Sum_probs=93.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcC
Q 044169 494 IKAYSQNGRARKAIILFEKMV-VEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAG 572 (742)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g 572 (742)
.+...-+|+++++.++.+.-. -..++ ..-...++.-+.+.|..+.|+++-..-. .-.+...+.|
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg 332 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLG 332 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcC
Confidence 345566889999877775211 11122 3447788888889999999988754432 2346778999
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 573 KLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 573 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
+++.|.++.++.. +...|..|......+|+++.|++.+++.. -+..|.-+|...|+.+.-.++.+....
T Consensus 333 ~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 333 NLDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp -HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999987765 78899999999999999999999999753 367788889999998888777777766
Q ss_pred CC
Q 044169 653 KE 654 (742)
Q Consensus 653 ~~ 654 (742)
+|
T Consensus 402 ~~ 403 (443)
T PF04053_consen 402 RG 403 (443)
T ss_dssp TT
T ss_pred cc
Confidence 65
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.24 E-value=11 Score=36.11 Aligned_cols=185 Identities=13% Similarity=0.055 Sum_probs=109.2
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCchHHHH
Q 044169 419 CDEFTYSSILKACSLLPSLATCEQIHSRIVKSKF--ESNVHVGSSLIEAYNKCGSWEDAERVFSQLT----AADVVSWNS 492 (742)
Q Consensus 419 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ 492 (742)
|-...|+..+. -.+.|++++|...|+.+..... +....+.-.++-++.+.+++++|...+++-. ...-..|-.
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 33444444443 4578999999999999987531 2235666677888899999999999888765 222234444
Q ss_pred HHHHHHHc-------CCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHH
Q 044169 493 MIKAYSQN-------GRAR---KAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYS 562 (742)
Q Consensus 493 li~~~~~~-------g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 562 (742)
-|.+++.- .|.. +|..-|++.+.. -||. .-...|..-...+... =...=.
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~-----LA~~Em 171 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA-----LAGHEM 171 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH-----HHHHHH
Confidence 45544421 2333 344444555543 3443 1112222222211110 001123
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 563 CMVDLLGRAGKLEIALIFISNLPIK-----PTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
.+.+-|.+.|.+..|..-+++|... .....+-.+..+|...|-.++|.....-+-...|+++
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 4567788888888887777766411 1244556677788888988888887776666667654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.66 E-value=1.4 Score=36.95 Aligned_cols=87 Identities=14% Similarity=0.012 Sum_probs=37.4
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCC-CHH---HHHHHHHHHHHcCC
Q 044169 532 CSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKP-TAP---IWRPLFAACRCHSD 605 (742)
Q Consensus 532 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p-~~~---~~~~l~~~~~~~g~ 605 (742)
.+..|+++.|++.|.+... -.+.....||.-..+|.-+|+.++|++=+++.. ..| ... .|..-...|+..|+
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3344444555554444432 122233344444444544555555544444321 011 111 11222223555666
Q ss_pred HHHHHHHHHHHHhcC
Q 044169 606 LKMAEFISKQILELD 620 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~ 620 (742)
.+.|..-|+.+-++.
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666665555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.37 Score=30.51 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 626 VYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 626 ~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
++..|+.+|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999998844
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.62 E-value=33 Score=40.26 Aligned_cols=23 Identities=13% Similarity=0.400 Sum_probs=12.3
Q ss_pred HHHHHHHhCC--CcHHHHHHHHHHh
Q 044169 391 AQIAGFFRNQ--KTEEAIEAFSQMV 413 (742)
Q Consensus 391 ~li~~~~~~g--~~~~A~~~~~~m~ 413 (742)
.+|.+|++.+ ..++|+....+.+
T Consensus 795 ~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 795 FILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4555566555 4555555555544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.51 E-value=4.5 Score=35.06 Aligned_cols=114 Identities=14% Similarity=0.080 Sum_probs=61.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh
Q 044169 494 IKAYSQNGRARKAIILFEKMVVEGIRPTN---STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR 570 (742)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 570 (742)
.....+.|++++|.+.|+.+... .+... ..-..++.++.+.+++++|...+++.++-+.-.|++. |.....+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHHH
Confidence 34445667777777777777664 22222 3455566677777777777777777766544444432 3333333332
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 571 AGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 571 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
-...+.++.-+- ..+.| .+....|...|+.+++..|++.
T Consensus 95 ~~~~~~~~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 95 YEQDEGSLQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHhhhHHhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 222222111111 11111 1224578888899999999654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.46 E-value=16 Score=36.38 Aligned_cols=99 Identities=9% Similarity=0.072 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCCCHH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C--CchHHHHHHHH
Q 044169 423 TYSSILKACSLLPSLA---TCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA-A--DVVSWNSMIKA 496 (742)
Q Consensus 423 t~~~ll~~~~~~g~~~---~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~ 496 (742)
++..++.++...+..+ +|..+.+.+.... +..+.++..-++.+.+.++.+++.+++.+|.. . ....+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4455555665555443 3334444443321 22233444445555556666666666666651 1 22344444443
Q ss_pred HHH--cCCHHHHHHHHHHHHHcCCCCCH
Q 044169 497 YSQ--NGRARKAIILFEKMVVEGIRPTN 522 (742)
Q Consensus 497 ~~~--~g~~~~A~~~~~~m~~~g~~p~~ 522 (742)
+.. ......|...+..+....+.|..
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 311 12234455555554443344443
|
It is also involved in sporulation []. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.055 Score=47.85 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=67.3
Q ss_pred HHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHH
Q 044169 122 EVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQ 201 (742)
Q Consensus 122 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 201 (742)
.+++.+.+.+.+.....+++.+.+.+...+...++.++..|++.++.+...+.++.... .-...+++.+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45667777788888888999998877667899999999999999988999988884433 444667788888888888
Q ss_pred HHHHHHHchh
Q 044169 202 AFSFFLKLDG 211 (742)
Q Consensus 202 A~~~~~~m~~ 211 (742)
|.-++.++..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 8888877643
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.34 E-value=29 Score=39.07 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=42.2
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHh---
Q 044169 393 IAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSK-FESNVHVGSSLIEAYNK--- 468 (742)
Q Consensus 393 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~-~~~~~~~~~~li~~~~~--- 468 (742)
...+.-.|+++.|++.+-+ ..+...|.+.+...+.-+.-.+-.+... ..+.... -.|...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3456668999999998877 3345667777777766654433322222 2121110 01112456677888876
Q ss_pred cCCHHHHHHHHHhcC
Q 044169 469 CGSWEDAERVFSQLT 483 (742)
Q Consensus 469 ~g~~~~A~~~~~~~~ 483 (742)
..+..+|.+.|--+.
T Consensus 340 ~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 340 ITDPREALQYLYLIC 354 (613)
T ss_dssp TT-HHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHH
Confidence 457788888877665
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.23 E-value=18 Score=36.40 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=26.8
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcH----HHHHHHHHHHhhcCCHHHHHHHHHh
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEE----AHYSCMVDLLGRAGKLEIALIFISN 583 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (742)
++...|.+..|.+..++..+-.-..-|. ....++.|.|...|+.|.|..-++.
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 4555555555555555543321111122 2344566666666666666655543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.18 E-value=17 Score=36.15 Aligned_cols=30 Identities=3% Similarity=0.077 Sum_probs=14.2
Q ss_pred CCChhhHHHHHHHHHhCCCc----HHHHHHHHHH
Q 044169 383 SASSVSWNAQIAGFFRNQKT----EEAIEAFSQM 412 (742)
Q Consensus 383 ~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m 412 (742)
.+|...-...+.++.+.|+. .+++..+..+
T Consensus 65 ~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 65 SKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 34444444445555555542 3455555544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.70 E-value=8.5 Score=32.61 Aligned_cols=65 Identities=8% Similarity=0.103 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC
Q 044169 387 VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKF 452 (742)
Q Consensus 387 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~ 452 (742)
.-....+..+...|+-+.--+++.++.+. -.+++.....+..+|.+.|+..++.+++..+-+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33445556666677766666666666543 256666666777777777777777777776666653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.27 E-value=25 Score=36.42 Aligned_cols=151 Identities=11% Similarity=0.036 Sum_probs=78.1
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHh-cCCCCcHHH
Q 044169 485 ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRP---TNSTFLAVLSACSHSGLVQDGQKVFESMVKE-YGILPEEAH 560 (742)
Q Consensus 485 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~ 560 (742)
....+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+..+|...++...+. ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 344577778888888888888888888877643111 2223333344555667778888877777651 111101111
Q ss_pred HHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044169 561 YSCMVDLLGRAGKLEIALIF-ISNLPIKPTAPIWRPLFAACRCH------SDLKMAEFISKQILELDPDDAAVYVTLSNM 633 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 633 (742)
...+...+.. ..+..... ........-...+..+...+... ++.+.+...|..+.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000012222223333333 778899999999999999888888887776
Q ss_pred HHhc
Q 044169 634 YAEA 637 (742)
Q Consensus 634 y~~~ 637 (742)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.40 E-value=19 Score=37.24 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 588 PTAPIWRPLFAACRCHSDLKMAEFISKQILELDP----DDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
....+|..+...+++.|+++.|...+.++...++ ..+.+...-+......|+..+|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3466788999999999999999999999988652 2567788889999999999999999888876333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.28 E-value=9.6 Score=38.19 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCc--HHHHHHHHHHhHHhcCCCCcHHHHHHHHHH
Q 044169 504 RKAIILFEKMVVEGIRPTNS--TFLAVLSACSHSGL--VQDGQKVFESMVKEYGILPEEAHYSCMVDL 567 (742)
Q Consensus 504 ~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 567 (742)
+.+..+|+.+.+.|+..+.. ....++..+..... +.++.++++.+.+ .|+++...+|..+.-+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHH
Confidence 46677888888878776653 34444443332222 4477788888855 5888887777665543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.83 E-value=3.8 Score=36.86 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 044169 606 LKMAEFISKQILELDPDDAAVYVTLSNMYAEAGL 639 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 639 (742)
+++|+.-+++++.++|+...++..++++|...|.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 3467777888888899888888888888877664
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.81 E-value=10 Score=34.10 Aligned_cols=133 Identities=11% Similarity=0.121 Sum_probs=81.4
Q ss_pred HHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC--ChHHHHHHHhccC
Q 044169 203 FSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCG--MMEDAESVFEGLV 280 (742)
Q Consensus 203 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~ 280 (742)
++.++.+.+.+++|+...+..+++.+.+.|+.....++ +..++-+|.......+-.+.... -.+-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45566667788899999999999999998887655444 44555555544333332222111 1334445554443
Q ss_pred CCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 044169 281 QRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIK 347 (742)
Q Consensus 281 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 347 (742)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35677788888999999999888775322 222334456666666666655555555444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.79 E-value=3.4 Score=40.54 Aligned_cols=76 Identities=22% Similarity=0.299 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 044169 456 VHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVV-----EGIRPTNSTFLA 527 (742)
Q Consensus 456 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 527 (742)
..++..++..+..+|+.+.+.+.++++. +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3456678888888898888888888876 34566899999999999999999988888765 477777766554
Q ss_pred HHHH
Q 044169 528 VLSA 531 (742)
Q Consensus 528 ll~a 531 (742)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.70 E-value=3.3 Score=36.65 Aligned_cols=54 Identities=15% Similarity=0.009 Sum_probs=33.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 601 RCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 601 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
...++.+.++.++..+.-+.|+.+..-..-++.+...|+|.+|..+++.+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 345566666666666666666666666666666666666666666666655443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.53 E-value=0.84 Score=28.20 Aligned_cols=30 Identities=23% Similarity=0.153 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044169 592 IWRPLFAACRCHSDLKMAEFISKQILELDP 621 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 621 (742)
+|..+...+...|++++|...++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455556666667777777777777776666
|
... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.33 E-value=3.1 Score=36.11 Aligned_cols=54 Identities=11% Similarity=-0.018 Sum_probs=43.7
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 602 CHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
..++.++++.+++.+.-+.|+.+..-..-++++...|+|++|.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 477888888888888888888888888888888888888888888888776553
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.17 E-value=0.9 Score=28.73 Aligned_cols=28 Identities=25% Similarity=0.091 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044169 592 IWRPLFAACRCHSDLKMAEFISKQILEL 619 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 619 (742)
+|..|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777788888888888888885543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=88.03 E-value=52 Score=37.21 Aligned_cols=52 Identities=17% Similarity=0.123 Sum_probs=22.8
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCC-CCHHHH-HHHHHHHHHcCCHHHHHHHHHHH
Q 044169 565 VDLLGRAGKLEIALIFISNLPIK-PTAPIW-RPLFAACRCHSDLKMAEFISKQI 616 (742)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~ 616 (742)
+..-.+.++++.+...|..|+.. .+..-| -=+..+....|+.++|...|+++
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333555555555555555410 111111 11233334455555555555554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.02 E-value=90 Score=39.94 Aligned_cols=280 Identities=14% Similarity=0.127 Sum_probs=148.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHh-cCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCC
Q 044169 357 GTAIVDMYSGLGEIWEAKKQLKE-MGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLP 435 (742)
Q Consensus 357 ~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 435 (742)
+-.+...|+..+++|....+... .. .|+ ...-|.-....|++..|..-|+++.+.+ ++...+++.++......+
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a-~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFA-DPS---LYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhc-Ccc---HHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhccc
Confidence 33444477777777766665552 22 222 2234445566788888888888887764 333667777777666667
Q ss_pred CHHHHHHHHHHHHHhCCCCchhHHHH-HHHHHHhcCCHHHHHHHHHhcCCCCchHHHHH--HHHHHHcC--CHHHHHHHH
Q 044169 436 SLATCEQIHSRIVKSKFESNVHVGSS-LIEAYNKCGSWEDAERVFSQLTAADVVSWNSM--IKAYSQNG--RARKAIILF 510 (742)
Q Consensus 436 ~~~~a~~i~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~ 510 (742)
.++...-..+..... ..+....++. =+.+--+.++++..+.... ..+..+|... +....+.. +.-.-.+..
T Consensus 1498 ~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i 1573 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLI 1573 (2382)
T ss_pred chhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHH
Confidence 766665544433322 1222222222 2344456677777666655 4555566554 22222222 211111233
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH----------hHHhcCCCCcHH------HHHHHHHHHhhcCCH
Q 044169 511 EKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFES----------MVKEYGILPEEA------HYSCMVDLLGRAGKL 574 (742)
Q Consensus 511 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~----------m~~~~~~~p~~~------~~~~l~~~~~~~g~~ 574 (742)
+.+++.-+.| +.+|+..|.+..+.++.-. .....++.++.. .|..-+..-....+.
T Consensus 1574 ~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~ 1645 (2382)
T KOG0890|consen 1574 ENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRI 1645 (2382)
T ss_pred HHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHH
Confidence 3333221111 1222222221111111111 111123333222 222222211111122
Q ss_pred HHHHHHHHhC----CCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 044169 575 EIALIFISNL----PIK-----PTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEE 645 (742)
Q Consensus 575 ~~A~~~~~~~----~~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 645 (742)
.+-+--+++. ..+ .-..+|......++..|.++.|....-.+.+..+ +..+...+......|+...|..
T Consensus 1646 ~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~ 1723 (2382)
T KOG0890|consen 1646 KEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALS 1723 (2382)
T ss_pred HhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHH
Confidence 2222112211 112 2356788899999999999999999888888774 6789999999999999999999
Q ss_pred HHHHHHhCCC
Q 044169 646 QRKLMKMKEI 655 (742)
Q Consensus 646 ~~~~m~~~~~ 655 (742)
++++..+...
T Consensus 1724 ~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1724 VLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHhhc
Confidence 9998886554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.93 E-value=1.8 Score=28.83 Aligned_cols=32 Identities=22% Similarity=0.524 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN 522 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 522 (742)
+|..+..+|.+.|++++|.++|++.++. .|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 4566677777777777777777777763 5554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.73 E-value=4 Score=39.92 Aligned_cols=96 Identities=17% Similarity=0.240 Sum_probs=71.4
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CC--------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 044169 451 KFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT-AA--------DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT 521 (742)
Q Consensus 451 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 521 (742)
|.+.+..+...++..-....++++++..+-++. .+ ...+|-.++. .=++++++.++..=++-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 445555666666766666778888888877765 22 2233333332 3367789999888889999999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 044169 522 NSTFLAVLSACSHSGLVQDGQKVFESMVK 550 (742)
Q Consensus 522 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 550 (742)
..+++.+++.+.+.+++.+|.++.-.|+.
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999999888777755
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.46 E-value=20 Score=31.81 Aligned_cols=87 Identities=18% Similarity=0.136 Sum_probs=50.9
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCcHHH-HHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHH
Q 044169 532 CSHSGLVQDGQKVFESMVKEYGILPEEAH-YSCMVDLLGRAGKLEIALIFISNLP-IKPTAPIWRPLFAACRCHSDLKMA 609 (742)
Q Consensus 532 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a 609 (742)
-...++.+++..++..+. -+.|.... -..-...+.+.|++.+|+.+|+++. ..|..+.-..|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 345567777777777763 34444332 2223345667788888888887765 334555556666666655444444
Q ss_pred HHHHHHHHhcCC
Q 044169 610 EFISKQILELDP 621 (742)
Q Consensus 610 ~~~~~~~~~~~p 621 (742)
....+.+++..+
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 445555666655
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.42 E-value=14 Score=33.86 Aligned_cols=95 Identities=13% Similarity=0.050 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCcH----HH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS--TFLAVLSACSHSGLVQDGQKVFESMVKEYGI--LPEE----AH 560 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~----~~ 560 (742)
.+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+.....+......- .++. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 44555666666666666666666666654444442 3555566666666666666665555321111 1111 12
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
|..| .+...|++.+|-+.|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2234667777777776554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.37 E-value=1.3 Score=27.32 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 625 AVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 625 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
..+..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999988753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.26 E-value=29 Score=34.87 Aligned_cols=132 Identities=14% Similarity=0.096 Sum_probs=71.2
Q ss_pred chHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----ChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Q 044169 301 EKPLRLVCLMREDGIDPNEYTFTVALASCAS--LR----NSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAK 374 (742)
Q Consensus 301 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 374 (742)
++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|.+...-.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL---------------------- 136 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL---------------------- 136 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc----------------------
Confidence 3456788888888888888877664433322 11 2333455555555532110
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhCCC----cHHHHHHHHHHhHcCCCCCh--HHHHHHHHHhcCCCCH--HHHHHHHHH
Q 044169 375 KQLKEMGKSASSVSWNAQIAGFFRNQK----TEEAIEAFSQMVRNDAACDE--FTYSSILKACSLLPSL--ATCEQIHSR 446 (742)
Q Consensus 375 ~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~--~~a~~i~~~ 446 (742)
. .++...+..++.. ..++ .+.+...|+.+.+.|+..+. ...+.++..+...... ..+..+++.
T Consensus 137 ------T-s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 137 ------T-SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred ------c-CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 0 2233333333332 2222 23455667777776765532 3444444444333333 366777888
Q ss_pred HHHhCCCCchhHHHHHH
Q 044169 447 IVKSKFESNVHVGSSLI 463 (742)
Q Consensus 447 ~~~~~~~~~~~~~~~li 463 (742)
+.+.|+++....|..+.
T Consensus 208 l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 208 LKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHcCCccccccccHHH
Confidence 88888887777665544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.67 E-value=29 Score=32.80 Aligned_cols=93 Identities=10% Similarity=0.008 Sum_probs=48.9
Q ss_pred HHHHHHHHhhc-CCHHHHHHHHHhCC-----CCCCHHHHHHHHH---HHHHcCCHHHHHHHHHHHHhcCCCCchh-----
Q 044169 561 YSCMVDLLGRA-GKLEIALIFISNLP-----IKPTAPIWRPLFA---ACRCHSDLKMAEFISKQILELDPDDAAV----- 626 (742)
Q Consensus 561 ~~~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~p~~~~~----- 626 (742)
+-.+.+.|... .+++.|+..++... .+.+...-..++. .-...+++.+|+.+|+++....-+++-.
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 33455566544 56667776666543 1122222223333 2456788999999999988765444332
Q ss_pred -HHH-HHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 627 -YVT-LSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 627 -~~~-l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
|.. -+-.+.-.++.-.+...+++-.+.
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 222 222222235555555555555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.55 E-value=1.5 Score=27.07 Aligned_cols=29 Identities=24% Similarity=0.192 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 625 AVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 625 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57899999999999999999999988754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.53 E-value=12 Score=40.19 Aligned_cols=149 Identities=12% Similarity=0.042 Sum_probs=103.8
Q ss_pred hcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHH
Q 044169 468 KCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFE 546 (742)
Q Consensus 468 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 546 (742)
-.|+++.|..++..++++ ..+.++.-+.+.|-.++|+++ .+|. .-|... .+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFela----l~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFELA----LKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhhh----hhcCcHHHHHHHHH
Confidence 457788887777666532 334455566667777776654 4444 233332 45788999988866
Q ss_pred HhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 044169 547 SMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAV 626 (742)
Q Consensus 547 ~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 626 (742)
+. .+..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+.+.-..+.....+....|.
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-- 726 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-- 726 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch--
Confidence 55 245568999999999999999999998754 366777888888888766666666666555333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 627 YVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 627 ~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
--.+|...|+++++.+++.+-
T Consensus 727 ---AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 ---AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---HHHHHHHcCCHHHHHHHHHhc
Confidence 334677899999999987553
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.39 E-value=31 Score=32.86 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--------CCc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC-CHHHHHHH
Q 044169 461 SLIEAYNKCGSWEDAERVFSQLTA--------ADV-VSWNSMIKAYSQNGRARKAIILFEKMVVEG--IRP-TNSTFLAV 528 (742)
Q Consensus 461 ~li~~~~~~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p-~~~t~~~l 528 (742)
.+...|.+...+++|-..|.+-.. ++. ..|-+.|-.|....++..|.+.++.--+-+ ..| +..+...|
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 344455555666665555443320 111 124444445555556666666666533221 111 22455555
Q ss_pred HHHHhccCcHHHHHHH
Q 044169 529 LSACSHSGLVQDGQKV 544 (742)
Q Consensus 529 l~a~~~~g~~~~a~~~ 544 (742)
+.+|-. |+.+++..+
T Consensus 235 L~ayd~-gD~E~~~kv 249 (308)
T KOG1585|consen 235 LTAYDE-GDIEEIKKV 249 (308)
T ss_pred HHHhcc-CCHHHHHHH
Confidence 555533 455554444
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=86.32 E-value=12 Score=38.92 Aligned_cols=109 Identities=15% Similarity=0.125 Sum_probs=63.3
Q ss_pred HHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 044169 566 DLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 643 (742)
..+...|+++.+...+.... ......+...++....+.|.+++|....+.++..+-+++.+...-+-.-...|-++++
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 34455666666666665443 2233445566666666667777777777777666555555554444444556777777
Q ss_pred HHHHHHHHhCCCCCCCcccEEEEcCEEEEEEeC
Q 044169 644 EEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQ 676 (742)
Q Consensus 644 ~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~ 676 (742)
...+++...-..+.+. .|+........|-.|
T Consensus 411 ~~~wk~~~~~~~~~~~--g~v~~~~~~~~~~~~ 441 (831)
T PRK15180 411 YHYWKRVLLLNPETQS--GWVNFLSSTQYFNDG 441 (831)
T ss_pred HHHHHHHhccCChhcc--cceeeeccceeccCc
Confidence 7777776654443333 455554444444433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.04 E-value=4 Score=40.06 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 593 WRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 593 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
+..++..+...|+.+.+...++++++.+|-+...|..++.+|...|+...|+..++.+.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 344445555556666666666666666666666666666666666666666666655543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.80 E-value=5 Score=36.94 Aligned_cols=76 Identities=21% Similarity=0.221 Sum_probs=55.7
Q ss_pred HhhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC---CchhHHHHHHHHHhcCCHH
Q 044169 568 LGRAGKLEIALIFISNLPIKP--TAPIWRPLFAACRCHSDLKMAEFISKQILELD-PD---DAAVYVTLSNMYAEAGLQA 641 (742)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~---~~~~~~~l~~~y~~~g~~~ 641 (742)
..+.|+ ++|.+.|-.+...| +.+.....+..|....|.+++++++-+++++. |+ |+..+..|+.+|.+.|+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 344455 56777776665333 34445555556666888999999999999974 22 7889999999999999999
Q ss_pred HHH
Q 044169 642 DAE 644 (742)
Q Consensus 642 ~A~ 644 (742)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 873
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.38 E-value=28 Score=31.36 Aligned_cols=134 Identities=10% Similarity=0.118 Sum_probs=72.6
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCC
Q 044169 138 RYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPN 217 (742)
Q Consensus 138 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 217 (742)
+....+.+.+++++..++..+++.+.+.|++.....+++--.-+|..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk--------------------------------- 61 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSK--------------------------------- 61 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcH---------------------------------
Confidence 34445556677788888888888888888777666655443323322
Q ss_pred hhhHHHHHHHHccCCChHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHh
Q 044169 218 HYTYSTMLAICGSLSAIDEGKQLHAQTMKL-QYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQ 296 (742)
Q Consensus 218 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 296 (742)
.....+-.+. +....+.++=-+|.+. + ..+..+++.+...|++-+|.++.+....-+...-..++.+-.+
T Consensus 62 --~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~ 132 (167)
T PF07035_consen 62 --PLACQLLSLG--NQYPPAYQLGLDMLKRLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAAN 132 (167)
T ss_pred --HHHHHHHHhH--ccChHHHHHHHHHHHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHH
Confidence 2221111111 1111222222222211 1 1234556667777888888887777655555555666777777
Q ss_pred CCCcchHHHHHHHHHHC
Q 044169 297 HGDYEKPLRLVCLMRED 313 (742)
Q Consensus 297 ~g~~~~A~~~~~~m~~~ 313 (742)
.+|...-..+|+-..+.
T Consensus 133 ~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 133 SNDDQLFYAVFRFFEER 149 (167)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77666555555555443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.46 E-value=3 Score=41.12 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=44.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 044169 494 IKAYSQNGRARKAIILFEKMVVEGIRP-TNSTFLAVLSACSHSGLVQDGQKVFESMV 549 (742)
Q Consensus 494 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 549 (742)
..-|.+.|.+++|+..|.+... +.| |.+++..-..+|.+...+..|..=....+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 4579999999999999998886 577 88999988899999888877766555543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.29 E-value=34 Score=31.46 Aligned_cols=87 Identities=10% Similarity=0.059 Sum_probs=58.7
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHH-----HHHHHHhhcCCHHHHHHHHHhCCCCCCHH--HHHHHHHHHHH
Q 044169 530 SACSHSGLVQDGQKVFESMVKEYGILPEEAHYS-----CMVDLLGRAGKLEIALIFISNLPIKPTAP--IWRPLFAACRC 602 (742)
Q Consensus 530 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~ 602 (742)
..+...+++++|...++.... . |....+. .|.......|.+++|+..++... .++-. ....-..++..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~---~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALA---Q-TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHc---c-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHH
Confidence 457778888888888876643 1 2222333 34567788899999999988765 22222 22333445788
Q ss_pred cCCHHHHHHHHHHHHhcCC
Q 044169 603 HSDLKMAEFISKQILELDP 621 (742)
Q Consensus 603 ~g~~~~a~~~~~~~~~~~p 621 (742)
.|+.++|...|+++++..+
T Consensus 172 kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 172 KGDKQEARAAYEKALESDA 190 (207)
T ss_pred cCchHHHHHHHHHHHHccC
Confidence 8889999999998888875
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.09 E-value=2 Score=27.84 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 625 AVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 625 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
.++..|+.+|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4688899999999999999999988764
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=83.86 E-value=11 Score=30.14 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=62.1
Q ss_pred chHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchh
Q 044169 132 CLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDG 211 (742)
Q Consensus 132 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 211 (742)
..++|..|-+.+...+- ....+.-.-+..+...|++++|..+.+.++.||...|-+|-.. +.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 46777777777766542 2444545556677889999999999999999999999887664 66777777777777777
Q ss_pred CCCCCChhhH
Q 044169 212 IDVQPNHYTY 221 (742)
Q Consensus 212 ~~~~p~~~t~ 221 (742)
.| .|...+|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 66 4444444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=83.79 E-value=16 Score=33.49 Aligned_cols=94 Identities=16% Similarity=0.073 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CCHHHHHH
Q 044169 457 HVGSSLIEAYNKCGSWEDAERVFSQLTAAD------VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIR---PTNSTFLA 527 (742)
Q Consensus 457 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ 527 (742)
..+..+.+.|.+.|+.++|.+.|.++.+.. ...+-.+|......+++..+.....+....--. ++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456678888999999999999999887432 235667788888889999988888776643222 22222112
Q ss_pred HHH--HHhccCcHHHHHHHHHHhHH
Q 044169 528 VLS--ACSHSGLVQDGQKVFESMVK 550 (742)
Q Consensus 528 ll~--a~~~~g~~~~a~~~~~~m~~ 550 (742)
+.. ++...+++.+|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 222 23456788888888866643
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.61 E-value=36 Score=31.27 Aligned_cols=90 Identities=12% Similarity=-0.025 Sum_probs=66.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 564 MVDLLGRAGKLEIALIFISNLPIKPTAPIWRP-----LFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
+...+..+|++++|...++.....|....+.. |.+...+.|.+++|...++...+-.= .+.....-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcC
Confidence 44678899999999999987553444344433 34456788889998888776554322 3445678899999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 044169 639 LQADAEEQRKLMKMKE 654 (742)
Q Consensus 639 ~~~~A~~~~~~m~~~~ 654 (742)
+-++|+..+++....+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999988765
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.61 E-value=82 Score=35.41 Aligned_cols=76 Identities=11% Similarity=0.028 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHcc
Q 044169 152 QFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGS 230 (742)
Q Consensus 152 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 230 (742)
..++..+|+.+.-.|++++|-...-.|-..+..-|-.-+..+...++...... -++......+...|..++..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 35778888888889999999999888888888888888888888777654433 34443333466778888777765
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.61 E-value=8.4 Score=37.88 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 593 WRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 593 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
.+.+-.+|.+.++++.|.++.+.++.+.|+++.-+--.+-+|.+.|.+..|..-++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4566677888899999999999999999988888888888899999999888877766543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.45 E-value=1.8 Score=24.89 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHH
Q 044169 625 AVYVTLSNMYAEAGLQADAEEQRK 648 (742)
Q Consensus 625 ~~~~~l~~~y~~~g~~~~A~~~~~ 648 (742)
.....++.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788889999999999988764
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.69 E-value=3.1 Score=25.56 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 625 AVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 625 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
.+|..++.+|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998764
|
... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.62 E-value=48 Score=31.97 Aligned_cols=240 Identities=18% Similarity=0.230 Sum_probs=136.2
Q ss_pred CCHHHHHHHHHhc-CCCCC-----hhhHHHHHHHHHhCCCcHHHHHHHHHHhHc---CC--CCChHHHHHHHHHhcCCCC
Q 044169 368 GEIWEAKKQLKEM-GKSAS-----SVSWNAQIAGFFRNQKTEEAIEAFSQMVRN---DA--ACDEFTYSSILKACSLLPS 436 (742)
Q Consensus 368 g~~~~A~~~~~~~-~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~~~~~~g~ 436 (742)
.+.++|..-|+++ ...+. -.+...+|..+.+.|++++.++.+.+|..- .+ .-+....++++.-.+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 4566666666665 11222 223345677888888888888888877541 11 1245567777777776666
Q ss_pred HHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CC-------chHHHHHHHH
Q 044169 437 LATCEQIHSRIVKS-----KFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA--------AD-------VVSWNSMIKA 496 (742)
Q Consensus 437 ~~~a~~i~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~ 496 (742)
.+.-..+++.-.+. +-..--.+-.-|...|...|++....+++.++.+ .| ...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 66666665533221 1111123345577778888888888888877641 11 2356667888
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHh-----ccCcHHHHHHHHHHhHHhcCC--CCcH---HHHHHHH
Q 044169 497 YSQNGRARKAIILFEKMVVEG-IRPTNSTFLAVLSACS-----HSGLVQDGQKVFESMVKEYGI--LPEE---AHYSCMV 565 (742)
Q Consensus 497 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~--~p~~---~~~~~l~ 565 (742)
|...++-..-..+|++.+.-. --|.+. ...+++-|. +.|.+++|..=|-+..+.+.- .|.. .-|-.|+
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 888888888888888765421 234443 344555553 567788876544444343321 2222 2366677
Q ss_pred HHHhhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044169 566 DLLGRAGK----LEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFIS 613 (742)
Q Consensus 566 ~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 613 (742)
.++.+.|- -.+|.- ....|.......++.+|..+ +..+-++++
T Consensus 280 NMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il 326 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN-DIIEFERIL 326 (440)
T ss_pred HHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence 77777762 122211 01345566677888888653 444444333
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.36 E-value=23 Score=31.74 Aligned_cols=47 Identities=13% Similarity=0.062 Sum_probs=20.5
Q ss_pred hcCChhHHHHHHccCCCCCcccHHHHHH-----HHHhCCChHHHHHHHHHch
Q 044169 164 KCGDIKSMVAVVKQMPYLDIASCNCLLA-----GYAKNALFDQAFSFFLKLD 210 (742)
Q Consensus 164 ~~g~~~~A~~~f~~~~~~~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~ 210 (742)
+.|..++|+.-|..+...+--+|-.|.. ...+.|+...|...|++.-
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia 121 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA 121 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh
Confidence 3344555555555444433333333221 2334444555555554443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.24 E-value=89 Score=34.79 Aligned_cols=246 Identities=12% Similarity=0.061 Sum_probs=122.1
Q ss_pred hCCCcHHHHHHHHHHhH-------cCCCCChHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044169 398 RNQKTEEAIEAFSQMVR-------NDAACDEFTYSSILKACSLLP-----SLATCEQIHSRIVKSKFESNVHVGSSLIEA 465 (742)
Q Consensus 398 ~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~g-----~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 465 (742)
...+.+.|+.+|+.+.. .| +......+...|.+.. +.+.|..++....+.| .|+....-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 34455556666555544 33 2223333344443322 4556667776666665 3333332222222
Q ss_pred HHh-cCCHHHHHHHHHhcCCC-CchHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 044169 466 YNK-CGSWEDAERVFSQLTAA-DVVSWNSMIKAYS----QNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQ 539 (742)
Q Consensus 466 ~~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 539 (742)
... ..+...|.++|...... .+.+.-.+...|. ...+.+.|..++++.-+.| .|-..--...+..+.. +.++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 222 23556777777666522 2222222222222 2346778888888888776 3433222233333433 5555
Q ss_pred HHHHHHHHhHHhcCCCCcHHHHHHHHHHH---hh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 044169 540 DGQKVFESMVKEYGILPEEAHYSCMVDLL---GR----AGKLEIALIFISNLPIKPTAPIWRPLFAACRC----HSDLKM 608 (742)
Q Consensus 540 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 608 (742)
.+.-.+..+.. .|.+--...-..+.+.. .. ..+.+.+...+.+...+.+......+...|.. ..+++.
T Consensus 415 ~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~ 493 (552)
T KOG1550|consen 415 TALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEK 493 (552)
T ss_pred HHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHH
Confidence 55555544432 23322111111111111 11 22455666666666545566665566555433 236777
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 044169 609 AEFISKQILELDPDDAAVYVTLSNMYAEAG---LQADAEEQRKLMKMK 653 (742)
Q Consensus 609 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g---~~~~A~~~~~~m~~~ 653 (742)
+...+.++-+.. +.....++.++-..- .+..|.++++...+.
T Consensus 494 a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 494 AAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 888777777665 666667777765421 156777777666543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.25 E-value=3.2 Score=25.14 Aligned_cols=23 Identities=13% Similarity=0.028 Sum_probs=10.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Q 044169 599 ACRCHSDLKMAEFISKQILELDP 621 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p 621 (742)
++.+.|+.++|...++++++..|
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHccCHHHHHHHHHHHHHHCc
Confidence 33444444444444444444444
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.11 E-value=62 Score=32.25 Aligned_cols=75 Identities=9% Similarity=0.077 Sum_probs=40.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044169 454 SNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACS 533 (742)
Q Consensus 454 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 533 (742)
++..+-...+.++++.|+.+-...+.+.+..++ .....+.++...|.. +|+..+.++.+. .||...-...+.+|.
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 445555556666666666433333333333333 233456666777764 577777777653 456555544454443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.84 E-value=60 Score=31.89 Aligned_cols=58 Identities=17% Similarity=0.040 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 594 RPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 594 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
+.....|...|.+.+|.++.++++.++|-+...+..|...|+..|+--.|.+-++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344568899999999999999999999999999999999999999888887777664
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.37 E-value=94 Score=33.86 Aligned_cols=128 Identities=6% Similarity=-0.101 Sum_probs=83.8
Q ss_pred CccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHH-HHhhccccchHHHH
Q 044169 59 AGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEV-LSYCSREECLELGR 137 (742)
Q Consensus 59 ~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~ 137 (742)
+-..|+ .+|.-- -+....+.+...+..++..- |..+-|-.- ..-=.+.|..+.+.
T Consensus 44 ~f~~wt-~li~~~--------~~~~~~~~~r~~y~~fL~ky---------------Pl~~gyW~kfA~~E~klg~~~~s~ 99 (577)
T KOG1258|consen 44 DFDAWT-TLIQEN--------DSIEDVDALREVYDIFLSKY---------------PLCYGYWKKFADYEYKLGNAENSV 99 (577)
T ss_pred cccchH-HHHhcc--------CchhHHHHHHHHHHHHHhhC---------------ccHHHHHHHHHHHHHHhhhHHHHH
Confidence 345677 666655 45555566666777776432 444433332 22234567777888
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHh-cCChhHHHHHHccCCC------CCcccHHHHHHHHHhCCChHHHHHHHHHch
Q 044169 138 RYHALITKTAVCGDQFVTASLVNMYAK-CGDIKSMVAVVKQMPY------LDIASCNCLLAGYAKNALFDQAFSFFLKLD 210 (742)
Q Consensus 138 ~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 210 (742)
.+|+.-+.. ++-+...|...+..+.. .|+.+..++.|+.... ....-|...|.--..++++.....+|++.+
T Consensus 100 ~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRil 178 (577)
T KOG1258|consen 100 KVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERIL 178 (577)
T ss_pred HHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 888877654 56677777776665554 4677777778876543 244568888888788888888888888887
Q ss_pred h
Q 044169 211 G 211 (742)
Q Consensus 211 ~ 211 (742)
+
T Consensus 179 e 179 (577)
T KOG1258|consen 179 E 179 (577)
T ss_pred h
Confidence 6
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.0 bits (159), Expect = 3e-11
Identities = 23/249 (9%), Positives = 71/249 (28%), Gaps = 11/249 (4%)
Query: 421 EFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFS 480
E + +L+ SL + + +++ + + A +
Sbjct: 92 EEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV 151
Query: 481 QL-------TAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACS 533
+ +N+++ +++ G ++ + + + G+ P ++ A L
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
Query: 534 HSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIW 593
+ + + G+ + + ++ RA L+ + P P
Sbjct: 212 RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP-- 269
Query: 594 RPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEE-QRKLMKM 652
P + D+ + P + ++ E + ++ +
Sbjct: 270 -PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPS 328
Query: 653 KEISKEPGC 661
KE+
Sbjct: 329 KEVKHARKT 337
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.1 bits (136), Expect = 2e-08
Identities = 14/124 (11%), Positives = 45/124 (36%), Gaps = 7/124 (5%)
Query: 214 VQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAE 273
P + +L ++D + Q + Q + A + + A
Sbjct: 88 ESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAH 147
Query: 274 SVFEGLVQR-------NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVAL 326
+ + + + A++ G+ + G +++ + ++ ++++ G+ P+ ++ AL
Sbjct: 148 HLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207
Query: 327 ASCA 330
Sbjct: 208 QCMG 211
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.1 bits (123), Expect = 5e-07
Identities = 17/165 (10%), Positives = 50/165 (30%), Gaps = 8/165 (4%)
Query: 122 EVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQM--- 178
+L + L++ + ++ + G Q + + ++
Sbjct: 97 RLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ 156
Query: 179 ----PYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAI 234
L + N ++ G+A+ F + + + P+ +Y+ L G
Sbjct: 157 RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQD 216
Query: 235 DEG-KQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEG 278
++ Q + + + LL+ + +++ V
Sbjct: 217 AGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.1 bits (97), Expect = 7e-04
Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 6/128 (4%)
Query: 310 MREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGE 369
R+ P E L + + Q + ++ A +
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 370 IWEAKKQLKEM------GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFT 423
+ A L K + +NA + G+ R +E + + D +
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 424 YSSILKAC 431
Y++ L+
Sbjct: 203 YAAALQCM 210
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 1e-09
Identities = 79/576 (13%), Positives = 178/576 (30%), Gaps = 175/576 (30%)
Query: 239 QLHAQTMKLQYLSKTAVSNALLTMYIK---CGMMEDAESVFEGLVQRNVISWTAIINGFK 295
+ +T + QY K +S ++ C ++D ++++S I +
Sbjct: 6 HMDFETGEHQYQYKDILS-VFEDAFVDNFDCKDVQDMP--------KSILSKEEIDHIIM 56
Query: 296 QHGDYEKPLRLVCLMR-----------EDGIDPNEYTFTVALASCASLRNSHMGYMFHAQ 344
LRL + E+ + N Y F ++ + S M M+ Q
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-YKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 345 VIKRGMALGDFVGTAIVDMY--SGLGEIWEAKKQLKE-----------M---GKS--ASS 386
+ + + Y S L + ++ L E + GK+ A
Sbjct: 116 RDRL------YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 387 VSWNAQIAGFF---------RNQKTEEAIEA-----FSQMVRNDAACDEFTYSSILKACS 432
V + ++ +N + E + Q+ N + + + + L+ S
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 433 LLPSLATCEQIHSRIVKSKFESNV-----HVGSS-LIEAYN-KC---------------- 469
+ L R++KSK N +V ++ A+N C
Sbjct: 230 IQAEL-------RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 470 -----------GSW----EDAERVFSQ---LTAAD----VVSWN----SMIKAYSQNGRA 503
S ++ + + + D V++ N S+I ++G A
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 504 RKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSC 563
++ + + + + L VL + +K+F+ + + P AH
Sbjct: 343 T--WDNWKHVNCDKLTTIIESSLNVLEP-------AEYRKMFDRLS----VFPPSAHIPT 389
Query: 564 MVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD 623
++ L + IW + + + + + ++E P +
Sbjct: 390 IL--------LSL---------------IWFDVIKSD---VMVVVNKLHKYSLVEKQPKE 423
Query: 624 AAVYVTLSNMYAEAGLQADAEEQ--RKLMKMKEISK-----EPGCSWIEVYNKIYRFFS- 675
+ + + ++Y E ++ + E R ++ I K + +++ Y Y
Sbjct: 424 STIS--IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY--FYSHIGH 479
Query: 676 ------QNKSHSEMPKVYEKLKQLMQQIEDIGHTDN 705
+ + V+ + L Q+I N
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 3e-04
Identities = 51/348 (14%), Positives = 100/348 (28%), Gaps = 98/348 (28%)
Query: 9 C--LINTSSFTFPYPVVEQVKPKKCNHRKTVEVKEPFASYSACQLFNKS--------PKR 58
C L+ T V + + H L K P+
Sbjct: 266 CKILLTTRFKQ----VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 59 A-----------GLSTSDLI--FNGYMNIEEKGISR---------NGYSTRNDSFPDGFI 96
S D + ++ + ++ ++ R F +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-KMFDRLSV 380
Query: 97 --DDGCSNTVPVTCYSLESL---LDKQFVIEVLSYCSREECLELGR-----RYHALI--T 144
+ L + + K V+ V++ + +E ++
Sbjct: 381 FPPS-----AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 145 KTAVCGDQFVTASLVNMY--AKCGDIKSMVAVVKQMPYLDIASCNCLLAGY-AKNALFDQ 201
K + + + S+V+ Y K D ++ PYLD + + G+ KN +
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIP-----PYLDQYFYSHI--GHHLKNIEHPE 488
Query: 202 AFSFF----LKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSK----- 252
+ F L ++ + H A S S ++ +QL + K Y+
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRH----DSTAWNASGSILNTLQQL--KFYK-PYICDNDPKY 541
Query: 253 TAVSNALLTMYIKCG---------------MMEDAESVFE---GLVQR 282
+ NA+L K +M + E++FE VQR
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 41/351 (11%), Positives = 101/351 (28%), Gaps = 36/351 (10%)
Query: 364 YSGLGEIWEAKKQLKE--MGKSASSVSWNAQIAGFFRNQKTEEAIEA---FSQMVRNDAA 418
Y+ L AK+ KE M + +++ ++ E + +S + DAA
Sbjct: 210 YTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269
Query: 419 CDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERV 478
Y L S L E S I + E + + + + D +
Sbjct: 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSI--NGLEKSSDLLLCKADTLFVRSRFIDVLAI 327
Query: 479 FSQLTAAD---VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHS 535
+++ D + + + + ++G K ++ +V P +
Sbjct: 328 TTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV--DRHPEKAV------TWLAV 379
Query: 536 GLVQDGQKVFESMVKEYG----ILPE--EAHYSCMVDLLGRA----GKLEIALIFISN-L 584
G+ + + + P+ A + G+ + A+ +
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWI-----GFAHSFAIEGEHDQAISAYTTAA 434
Query: 585 PIKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643
+ T + L ++ +A + L D + L + A
Sbjct: 435 RLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTA 494
Query: 644 EEQ-RKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQL 693
+ + + + ++ W + + + + K + + L
Sbjct: 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 26/199 (13%), Positives = 64/199 (32%), Gaps = 13/199 (6%)
Query: 464 EAYNKCGSWEDAERVFSQLTAADVVS--WNSMIKAYSQNGRARKAIILFEKMVVEGIRPT 521
E ++A ++ Q + + + Y+ +A +++ ++ +
Sbjct: 175 ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM--VDAK 232
Query: 522 NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEE-----AHYSCMVDLLGRAGKLEI 576
+ A S+ L D + + E+ + Y ++ +L
Sbjct: 233 C--YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290
Query: 577 ALIFISNLPIKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYA 635
A ++S++ ++ + S I+ +ILE+DP + VY
Sbjct: 291 AEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLH 350
Query: 636 EAGLQADAEEQ-RKLMKMK 653
E+G + L+
Sbjct: 351 ESGEKNKLYLISNDLVDRH 369
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 9e-04
Identities = 41/297 (13%), Positives = 89/297 (29%), Gaps = 31/297 (10%)
Query: 367 LGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDE--FTY 424
L + + + KS+ + F + + + ++++ D + +
Sbjct: 288 LRRAEDYLSSINGLEKSSDL--LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH 345
Query: 425 SSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA 484
+ L L K + + VG Y +A R FS+ +
Sbjct: 346 LASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI----YYLCVNKISEARRYFSKSST 401
Query: 485 AD---VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNST---FLAVLSACSHSGLV 538
D +W +++ G +AI + + FL + G +
Sbjct: 402 MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGM--QHMQLGNI 457
Query: 539 QDGQKVFESMVKEYGILPEEAH-YSCMVDLLGRAGKLEIALIFISN-LPIKPTAPIWRPL 596
+ + Y + + + + + ++ A+ N L +
Sbjct: 458 LLANEYLQ---SSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514
Query: 597 FAACR-----CHSDLKM---AEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEE 645
+AA + LKM A Q L L +DA V+ ++ +Y + A
Sbjct: 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT 571
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 5e-06
Identities = 32/253 (12%), Positives = 81/253 (32%), Gaps = 15/253 (5%)
Query: 445 SRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRAR 504
R+ S E +V L AY + +A ++ + + + + R
Sbjct: 23 QRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRD 82
Query: 505 KAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCM 564
+ ++ + + TN+TFL + + + ++ ++ +
Sbjct: 83 AIVAELDREMSRSVDVTNTTFLLMA------ASIYFYDQNPDAALRTLHQGDSLECMAMT 136
Query: 565 VDLLGRAGKLEIAL-IFISNLPIKPTAPIWRPLFAACRCHS---DLKMAEFISKQILELD 620
V +L + +L++A A + + A + L+ A +I +++ +
Sbjct: 137 VQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC 196
Query: 621 PDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSH 680
+ + + G AE + + + K+ G + N + K
Sbjct: 197 SPTLLLLNGQAACHMAQGRWEAAEGVLQ----EALDKDSGHPET-LINLVVLSQHLGKPP 251
Query: 681 SEMPKVYEKLKQL 693
+ +LK
Sbjct: 252 EVTNRYLSQLKDA 264
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 31/192 (16%), Positives = 65/192 (33%), Gaps = 20/192 (10%)
Query: 465 AYNKCGSWEDAERVFSQLTAAD---VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT 521
+ G +E AER QL + + + Q R ++ ++ P
Sbjct: 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTL-AIK-QNPL 65
Query: 522 NSTFLAVLSACSHSGLVQDGQKVFESMVKEYG----ILPE--EAHYSCMVDLLGRAGKLE 575
+ + L G V + + ++ Y + P+ + + + + L AG +E
Sbjct: 66 LAEAYSNL------GNVYKERGQLQEAIEHYRHALRLKPDFIDGYIN-LAAALVAAGDME 118
Query: 576 IALIFISN-LPIKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNM 633
A+ + L P + L + L+ A+ + +E P+ A + L +
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Query: 634 YAEAGLQADAEE 645
+ G A
Sbjct: 179 FNAQGEIWLAIH 190
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 20/192 (10%)
Query: 465 AYNKCGSWEDAERVFSQ---LTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT 521
A G E A + + + + GR +A + K + +P
Sbjct: 110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQPN 167
Query: 522 NSTFLAVLSACSHSGLVQDGQKVFESMVKEY----GILPE--EAHYSCMVDLLGRAGKLE 575
+ A S+ G V + Q + + + P +A+ + + ++L A +
Sbjct: 168 FAV------AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN-LGNVLKEARIFD 220
Query: 576 IALIFISN-LPIKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNM 633
A+ L + P A + L + +A ++ +EL P Y L+N
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280
Query: 634 YAEAGLQADAEE 645
E G A+AE+
Sbjct: 281 LKEKGSVAEAED 292
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 1e-04
Identities = 35/176 (19%), Positives = 64/176 (36%), Gaps = 16/176 (9%)
Query: 486 DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVF 545
S N++ + G +A+ L+ K + + P + +A S+ V Q
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKAL--EVFPEFA------AAHSNLASVLQQQGKL 59
Query: 546 ESMVKEY----GILPEEAH-YSCMVDLLGRAGKLEIAL-IFISNLPIKPT-APIWRPLFA 598
+ + Y I P A YS M + L ++ AL + + I P A L +
Sbjct: 60 QEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS 119
Query: 599 ACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG-LQADAEEQRKLMKMK 653
+ ++ A + L+L PD Y L++ E +KL+ +
Sbjct: 120 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 23/193 (11%), Positives = 53/193 (27%), Gaps = 12/193 (6%)
Query: 460 SSLIEAYNKCGSWEDAERVFSQ---LTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVE 516
+S + + V Q LT A VV+ S ++ + + +
Sbjct: 196 ASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQ--AH 253
Query: 517 GIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE--EAHYSCMVDLLGRAGKL 574
G+ P +A + ++ Q++ + + +G+ P+ A S +
Sbjct: 254 GLPPDQVVAIASNIGGKQA--LETVQRLLPVLCQAHGLTPDQVVAIASHGG-GKQALETV 310
Query: 575 EIALIFISN-LPIKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSN 632
+ L + + P + ++ + Q L PD +
Sbjct: 311 QRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 370
Query: 633 MYAEAGLQADAEE 645
Sbjct: 371 GKQALETVQRLLP 383
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 22/201 (10%), Positives = 50/201 (24%), Gaps = 28/201 (13%)
Query: 463 IEAYNKCGS-------WEDAERVFSQ---LTAADVVSWNSMIKAYSQNGRARKAIILFEK 512
+ A G + V Q LT VV+ S ++ + + +
Sbjct: 294 VVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ 353
Query: 513 MVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFE----SMVKEYGILPE--EAHYSCMVD 566
G+ P A + +G + + + + + +G+ P+ A S
Sbjct: 354 --AHGLTPDQVV------AIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG- 404
Query: 567 LLGRAGKLEIALIFISN-LPIKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDA 624
++ L + + P + ++ + Q L P
Sbjct: 405 -KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQV 463
Query: 625 AVYVTLSNMYAEAGLQADAEE 645
+
Sbjct: 464 VAIASHDGGKQALETVQQLLP 484
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 43/318 (13%), Positives = 87/318 (27%), Gaps = 64/318 (20%)
Query: 396 FFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESN 455
+ K +EA + F K PS ++ S++VK+
Sbjct: 81 LLKQGKLDEAEDDFK------------------KVLKSNPSEQEEKEAESQLVKADEMQR 122
Query: 456 VHVGSSLIEAYNKCGSWEDAERVFSQ---LTAADVVSWNSMIKAYSQNGRARKAIILFEK 512
+ S + A + + D + + + G RKAI +
Sbjct: 123 LR---SQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179
Query: 513 MVVEGIRPTNSTFLAVLSAC-SHSGLVQDGQKVFE----------SMVKEYGILPEEAHY 561
++ N+ +S G + Y + +
Sbjct: 180 ASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 237
Query: 562 SCMVDLLGRAGKLEIALIFISN-LPIKPTAPIWRP--LFAACRCHSDLKM---AEFISKQ 615
+ L R G+ A + + +P+ + C C S + A I +
Sbjct: 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297
Query: 616 ILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFS 675
+L+++PD+ + Y + +A I+ Y
Sbjct: 298 VLQMEPDNVNALKDRAEAYLIEEMYDEA--------------------IQDYEAAQEHNE 337
Query: 676 QNKS-HSEMPKVYEKLKQ 692
++ + K LKQ
Sbjct: 338 NDQQIREGLEKAQRLLKQ 355
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 55/346 (15%), Positives = 108/346 (31%), Gaps = 70/346 (20%)
Query: 401 KTEEAIEAFSQMV---------------------RNDAACDEFTYSSILKACSLLPSLAT 439
K++ A+ ++++ + D A D+F K PS
Sbjct: 75 KSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFK-----KVLKSNPSENE 129
Query: 440 CEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQ---LTAADVVSWNSMIKA 496
++ S+++KS E S G + A + + D +
Sbjct: 130 EKEAQSQLIKSD-EMQRLR--SQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186
Query: 497 YSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSAC-SHSGLVQDGQKVFESMVK----- 550
+ + G RKAI + ++ N+ +S G + +K
Sbjct: 187 FIKEGEPRKAISDLKAAS--KLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 244
Query: 551 -----EYGILPEEAHYSCMVDLLGRAGKLEIALIFISN-LPIKPT-APIWRPLFAA-CRC 602
Y + + + L R G+ A + + +P+ A C C
Sbjct: 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHC 304
Query: 603 HSDLKM---AEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA---------------E 644
S + A + ++L+++PD+ + Y + +A +
Sbjct: 305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ 364
Query: 645 EQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKL 690
+ L K + + K+ S Y KI +N E+ K Y KL
Sbjct: 365 IREGLEKAQRLLKQ---SQKRDYYKILG-VKRNAKKQEIIKAYRKL 406
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 742 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.73 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.7 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.69 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.62 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.61 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.61 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.6 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.6 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.5 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.49 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.48 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.48 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.48 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.47 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.47 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.46 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.46 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.43 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.42 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.41 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.41 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.4 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.4 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.38 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.37 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.37 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.3 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.29 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.28 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.28 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.28 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.26 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.25 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.25 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.24 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.23 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.21 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.19 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.19 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.18 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.16 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.14 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.07 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.06 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.05 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.0 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.0 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.95 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.94 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.94 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.94 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.94 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.91 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.9 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.9 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.89 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.88 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.86 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.85 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.83 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.78 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.77 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.77 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.77 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.75 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.73 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.73 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.72 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.72 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.72 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.7 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.69 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.66 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.66 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.65 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.64 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.64 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.61 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.61 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.6 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.58 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.57 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.57 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.56 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.56 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.54 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.54 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.53 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.52 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.5 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.5 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.49 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.44 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.43 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.42 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.41 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.4 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.4 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.39 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.38 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.37 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.36 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.35 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.34 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.33 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.32 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.32 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.32 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.3 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.3 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.3 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.28 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.27 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.27 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.25 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.24 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.23 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.23 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.22 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.21 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.19 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.18 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.17 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.17 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.13 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.11 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.11 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.1 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.06 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.05 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.05 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.04 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.03 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.03 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.02 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.01 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.0 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.0 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.97 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.96 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.96 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.95 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.92 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.88 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.87 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.87 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.85 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.84 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.81 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.81 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.81 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.8 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.79 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.77 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.69 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.68 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.68 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.65 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.65 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.54 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.52 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.44 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.42 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.29 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.28 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.27 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.24 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.24 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.22 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.01 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.86 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.84 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.82 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.81 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.72 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.58 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.47 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.44 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.34 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.22 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.12 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.92 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.87 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.76 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.51 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.45 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.17 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.07 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.58 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.37 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.06 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.92 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.74 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.5 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.27 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 91.32 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 91.23 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.19 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.07 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.82 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.27 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 88.51 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.48 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.41 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 87.33 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.57 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.52 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.62 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 85.45 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.42 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 83.25 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.02 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 82.79 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 82.58 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.42 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.1 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 80.21 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=373.15 Aligned_cols=489 Identities=8% Similarity=-0.044 Sum_probs=353.5
Q ss_pred ccccCCCCCCccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhcc
Q 044169 50 QLFNKSPKRAGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSR 129 (742)
Q Consensus 50 ~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 129 (742)
..|+.+|.+++..|+ .++.+| .+.|++++|+.+|++|... . |+..++..++.+|.+
T Consensus 74 ~~~~~~~~~~~~~~~-~~~~~~--------~~~g~~~~A~~~~~~~~~~--~-------------p~~~~~~~l~~~~~~ 129 (597)
T 2xpi_A 74 NAQNTDSLSREDYLR-LWRHDA--------LMQQQYKCAAFVGEKVLDI--T-------------GNPNDAFWLAQVYCC 129 (597)
T ss_dssp --------CHHHHHH-HHHHHH--------HHTTCHHHHHHHHHHHHHH--H-------------CCHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHH-HHHHHH--------HHccCchHHHHHHHHHHhh--C-------------CCchHHHHHHHHHHH
Confidence 678888889999999 999999 9999999999999999854 3 677899999999999
Q ss_pred ccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCC-------------------CcccHHHHH
Q 044169 130 EECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYL-------------------DIASCNCLL 190 (742)
Q Consensus 130 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li 190 (742)
.|+++.|..+++.+... ++++.+++.++.+|.++|++++|.++|+++... +..+|+.++
T Consensus 130 ~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (597)
T 2xpi_A 130 TGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207 (597)
T ss_dssp TTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHH
Confidence 99999999999987654 688999999999999999999999999964433 367899999
Q ss_pred HHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHH--HH-HHHHHHhCCCCChhHHHHHHHHHHhCC
Q 044169 191 AGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGK--QL-HAQTMKLQYLSKTAVSNALLTMYIKCG 267 (742)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g 267 (742)
.+|.+.|++++|+++|++|.+.+ +.+...+..+...+...+..+.+. .+ +..+...+......+++.++.+|.+.|
T Consensus 208 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 286 (597)
T 2xpi_A 208 QVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999998753 223444555544443332222111 11 333443344444556677778888888
Q ss_pred ChHHHHHHHhccCC--CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 044169 268 MMEDAESVFEGLVQ--RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQV 345 (742)
Q Consensus 268 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 345 (742)
++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 287 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------------- 335 (597)
T 2xpi_A 287 ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID------------------------------- 335 (597)
T ss_dssp HHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------
T ss_pred hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-------------------------------
Confidence 88888888888876 677888888888888888888888888876543
Q ss_pred HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHH
Q 044169 346 IKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYS 425 (742)
Q Consensus 346 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 425 (742)
+.+..+|+.++.+|.+.|+.++|..+|+++.+.. +.+..++.
T Consensus 336 -------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 377 (597)
T 2xpi_A 336 -------------------------------------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWL 377 (597)
T ss_dssp -------------------------------------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHH
T ss_pred -------------------------------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 1223334444444444444444444444443321 22333444
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCC
Q 044169 426 SILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGR 502 (742)
Q Consensus 426 ~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 502 (742)
.++..|.+.|++++|.++|+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|+
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 456 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN 456 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC
Confidence 44444444444444444444444332 3345567777777777777777777777664 3467788888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCc--HHHHHHHHHHHhhcCCHHHH
Q 044169 503 ARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEY---GILPE--EAHYSCMVDLLGRAGKLEIA 577 (742)
Q Consensus 503 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A 577 (742)
+++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|
T Consensus 457 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 457 ILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 888888888888752 3456788888888888888888888888886532 55677 67889999999999999999
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 044169 578 LIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAE 636 (742)
Q Consensus 578 ~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 636 (742)
.+.++++. .+.+..+|..+..+|...|++++|.+.++++++++|+++.++..++++|..
T Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 536 IDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99988764 344788999999999999999999999999999999999999999888743
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=372.23 Aligned_cols=482 Identities=11% Similarity=-0.009 Sum_probs=401.5
Q ss_pred HHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHH
Q 044169 162 YAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLH 241 (742)
Q Consensus 162 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 241 (742)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 55678888888999999989999999999999999999999999999985 4688899999999999999999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCC-------------------CcchHHHHHHHHHhCCCcch
Q 044169 242 AQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQR-------------------NVISWTAIINGFKQHGDYEK 302 (742)
Q Consensus 242 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 302 (742)
+.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987643 678899999999999999999999999965433 37899999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChhHH--HHH-HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Q 044169 303 PLRLVCLMREDGIDPN-EYTFTVALASCASLRNSHMG--YMF-HAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLK 378 (742)
Q Consensus 303 A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a--~~i-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 378 (742)
|+++|++|.+.+ |+ ...+..+...+...+..+.. ..+ +..+...+......+++.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999998864 44 34444444333322222211 111 3444444545556677788999999999999999999
Q ss_pred hcC-CCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchh
Q 044169 379 EMG-KSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVH 457 (742)
Q Consensus 379 ~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~ 457 (742)
++. .+++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|+.++|..+++.+.+.. +.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 984 24889999999999999999999999999999876 3477889999999999999999999999998764 66789
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 044169 458 VGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSH 534 (742)
Q Consensus 458 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 534 (742)
+++.++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 99999999999999999999999875 4567899999999999999999999999999853 4467899999999999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCC--HHHHHHHHHHHHHcCC
Q 044169 535 SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-------IKPT--APIWRPLFAACRCHSD 605 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~--~~~~~~l~~~~~~~g~ 605 (742)
.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|+++|+++. ..|+ ..+|..++.+|.+.|+
T Consensus 454 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999863 34578899999999999999999999999873 3676 7899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 606 LKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+++|...++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999998754
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-25 Score=234.65 Aligned_cols=371 Identities=14% Similarity=0.173 Sum_probs=248.0
Q ss_pred HHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChH
Q 044169 191 AGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMME 270 (742)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (742)
..+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...+....+.. +.+...+..+...|.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 44556677777777776665542 2233344444555566666666666666665543 445556666666666666666
Q ss_pred HHHHHHhccCC--C-CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 044169 271 DAESVFEGLVQ--R-NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIK 347 (742)
Q Consensus 271 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 347 (742)
+|...|+++.. | +..+|..+..++.+.|++++|++.|+++.+. .|+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~---------------------------- 134 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDL---------------------------- 134 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTC----------------------------
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc----------------------------
Confidence 66666665532 2 2334555666666666666666666555442 1221
Q ss_pred hCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc--CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHH
Q 044169 348 RGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM--GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYS 425 (742)
Q Consensus 348 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 425 (742)
...+..+...|...|++++|.+.|+++ ..+.+..+|+.+...+.+.|++++|+..|+++.
T Consensus 135 ------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al------------ 196 (388)
T 1w3b_A 135 ------YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV------------ 196 (388)
T ss_dssp ------THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH------------
T ss_pred ------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------
Confidence 122222333333344444444444333 002234445555555555555555555555444
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCC
Q 044169 426 SILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGR 502 (742)
Q Consensus 426 ~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 502 (742)
+.+ +.+...+..+...+...|++++|...|++.. +.+..+|..+..+|.+.|+
T Consensus 197 -----------------------~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 197 -----------------------TLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp -----------------------HHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred -----------------------hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC
Confidence 432 2334556666777777777777777777654 3356788888889999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 044169 503 ARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFI 581 (742)
Q Consensus 503 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (742)
+++|+..|+++.+. .|+ ..++..+..++.+.|++++|.+.|+++.+. .+.+...+..++.++.+.|++++|.+.+
T Consensus 253 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 253 IDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp HHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999884 454 567888899999999999999999999763 4567788999999999999999999999
Q ss_pred HhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 044169 582 SNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGL 639 (742)
Q Consensus 582 ~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 639 (742)
+++. ..| +..++..+...+.+.|++++|...++++++++|+++.+|..++.+|...|+
T Consensus 329 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9865 344 578899999999999999999999999999999999999999999988764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-27 Score=251.77 Aligned_cols=212 Identities=12% Similarity=0.061 Sum_probs=164.7
Q ss_pred HHHHHHHHHchhCCCCCCh-hhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhc
Q 044169 200 DQAFSFFLKLDGIDVQPNH-YTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEG 278 (742)
Q Consensus 200 ~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (742)
..+..+.+.+.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 3445566777777766554 357888999999999999999999999999999999999999988887765432
Q ss_pred cCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHH
Q 044169 279 LVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGT 358 (742)
Q Consensus 279 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 358 (742)
.+.+..++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 1234567889999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc---CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcC
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEM---GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSL 433 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 433 (742)
++|.+|++.|++++|.++|++| ++.||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..++.
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 8888888888888888888877 66788888888888888888888888888888888888888888888877765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-24 Score=225.35 Aligned_cols=353 Identities=14% Similarity=0.094 Sum_probs=289.6
Q ss_pred HHHHhCCCcchHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Q 044169 292 NGFKQHGDYEKPLRLVCLMREDGIDPN-EYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEI 370 (742)
Q Consensus 292 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 370 (742)
..+.+.|++++|++.++++.+. .|+ ...+..+...+...|+++.|...++...+.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3455566666666666666554 233 3344444455566667777776666666543 44667778888888888888
Q ss_pred HHHHHHHHhc-CC-CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 044169 371 WEAKKQLKEM-GK-SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIV 448 (742)
Q Consensus 371 ~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 448 (742)
++|.+.|+++ .. +.+..+|..+..++.+.|++++|++.|+++.+.. +.+...+..+...+...|++++|...+..+.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888876 11 4456679999999999999999999999998864 2234566778888889999999999999998
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHH
Q 044169 449 KSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NST 524 (742)
Q Consensus 449 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t 524 (742)
+.. +.+..++..+..+|.+.|++++|...|+++. +.+...|..+...+...|++++|+..+++..+. .|+ ..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHH
Confidence 874 4567889999999999999999999999886 345668999999999999999999999999884 565 578
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHH
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRC 602 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 602 (742)
+..+..++...|++++|.+.|+++.+. .+.+...|..++.+|.+.|++++|++.++++. .+.+..+|..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 899999999999999999999999762 33456789999999999999999999999874 45578899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 603 HSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 603 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
.|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998863
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-26 Score=247.15 Aligned_cols=184 Identities=15% Similarity=0.179 Sum_probs=161.4
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHhCCCCchh
Q 044169 387 VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPS---------LATCEQIHSRIVKSKFESNVH 457 (742)
Q Consensus 387 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~a~~i~~~~~~~~~~~~~~ 457 (742)
..++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35777888888889999999999999888999999999999988876654 678888999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044169 458 VGSSLIEAYNKCGSWEDAERVFSQLT----AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACS 533 (742)
Q Consensus 458 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 533 (742)
+|++||.+|++.|++++|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999998886 67888999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc
Q 044169 534 HSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA 571 (742)
Q Consensus 534 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 571 (742)
+.|++++|.+++++|.+ .+..|+..+|+.+++.|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999965 68999999999988888764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-22 Score=222.03 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=60.4
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 044169 185 SCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYI 264 (742)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 264 (742)
.|......+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|...++.+++.+ +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34455566666777777777777766643 566666666677777777777777777766654 444556666666777
Q ss_pred hCCChHHHHHHHhcc
Q 044169 265 KCGMMEDAESVFEGL 279 (742)
Q Consensus 265 ~~g~~~~A~~~~~~~ 279 (742)
+.|++++|...|+++
T Consensus 85 ~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 85 GLGKFADAMFDLSVL 99 (514)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 777777777666665
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.7e-22 Score=217.58 Aligned_cols=428 Identities=8% Similarity=-0.031 Sum_probs=319.9
Q ss_pred hhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHH
Q 044169 219 YTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ---RNVISWTAIINGFK 295 (742)
Q Consensus 219 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 295 (742)
..+......+...|++++|...|..+++.. |+...+..+..+|.+.|++++|...|+++.+ .+..+|..+..+|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 456667788889999999999999999986 6899999999999999999999999998754 35678999999999
Q ss_pred hCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHH---HHHHHHhCCCHHH
Q 044169 296 QHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTA---IVDMYSGLGEIWE 372 (742)
Q Consensus 296 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~---li~~~~~~g~~~~ 372 (742)
+.|++++|+..|+++...+ +++......++..+........+.+.+..+...+..++...... .............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999998875 34444444444444333322222222222211111111110000 0011111112222
Q ss_pred HHHHHHhcCCC---------CChhhHHHHHHHHHh---CCCcHHHHHHHHHHhH-----cCCCC--------ChHHHHHH
Q 044169 373 AKKQLKEMGKS---------ASSVSWNAQIAGFFR---NQKTEEAIEAFSQMVR-----NDAAC--------DEFTYSSI 427 (742)
Q Consensus 373 A~~~~~~~~~~---------~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~l 427 (742)
+...+...... .+...+......+.. .|++++|+..|+++.. ..-.| +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 22222222111 123444444554554 8999999999999887 32122 34577788
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHH
Q 044169 428 LKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRAR 504 (742)
Q Consensus 428 l~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 504 (742)
...+...|+++.|...++.+.+.... ...+..+..+|...|++++|...|+++. +.+...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999887533 8888999999999999999999999876 346678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044169 505 KAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNL 584 (742)
Q Consensus 505 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (742)
+|+..++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..++.+|.+.|++++|.+.++++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999852 334578888999999999999999999999763 3345678889999999999999999999876
Q ss_pred C----CCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 585 P----IKPT----APIWRPLFAACRC---HSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 585 ~----~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
. ..++ ...|..+...+.. .|++++|...++++++..|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4 2222 4488899999999 999999999999999999999999999999999999999999999998864
Q ss_pred C
Q 044169 654 E 654 (742)
Q Consensus 654 ~ 654 (742)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-20 Score=203.09 Aligned_cols=339 Identities=12% Similarity=0.024 Sum_probs=245.3
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHH
Q 044169 283 NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVD 362 (742)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 362 (742)
+...|..+...+.+.|++++|+.+|+++.+. .+.+..++..+..++...|++++|...++.+.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 4566888888888888888888888888764 23356666666666666677777776666666654 223444555555
Q ss_pred HHHhCCCHHHHHHHHHhc-CCCCC-h---hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCH
Q 044169 363 MYSGLGEIWEAKKQLKEM-GKSAS-S---VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSL 437 (742)
Q Consensus 363 ~~~~~g~~~~A~~~~~~~-~~~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 437 (742)
.|.+.|++++|.+.|+++ ...|+ . ..|..++..+... .+..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCH
Confidence 555555555555555554 11222 2 3333333321111 111223346667888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044169 438 ATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMV 514 (742)
Q Consensus 438 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 514 (742)
++|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++. +.+..+|..+...|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888887764 5567888889999999999999999998876 4567899999999999999999999999998
Q ss_pred HcCCCCCHH-HHHHH------------HHHHhccCcHHHHHHHHHHhHHhcCCCCc--HHHHHHHHHHHhhcCCHHHHHH
Q 044169 515 VEGIRPTNS-TFLAV------------LSACSHSGLVQDGQKVFESMVKEYGILPE--EAHYSCMVDLLGRAGKLEIALI 579 (742)
Q Consensus 515 ~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 579 (742)
+. .|+.. .+..+ ..+|.+.|++++|.+.|+++.+...-.|. ..++..++.++.+.|++++|++
T Consensus 239 ~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred Hh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 74 56553 34433 78899999999999999999764222121 4578899999999999999999
Q ss_pred HHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH------------HHhcC-----CH
Q 044169 580 FISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNM------------YAEAG-----LQ 640 (742)
Q Consensus 580 ~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------y~~~g-----~~ 640 (742)
.++++. .+.+...|..+..+|...|++++|...++++++++|+++.++..++.+ |...| +.
T Consensus 317 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 999864 344689999999999999999999999999999999999999999944 55555 44
Q ss_pred HHHHHHHHH
Q 044169 641 ADAEEQRKL 649 (742)
Q Consensus 641 ~~A~~~~~~ 649 (742)
+++.+.+++
T Consensus 397 ~~~~~~y~~ 405 (450)
T 2y4t_A 397 QEIIKAYRK 405 (450)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555666654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-20 Score=208.03 Aligned_cols=427 Identities=9% Similarity=0.025 Sum_probs=217.3
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 044169 185 SCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYI 264 (742)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 264 (742)
.|..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|.+.++.+++.. +.+...+..+..+|.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 45555666666666677777766666543 3355666666666677777777777777776664 445666677777777
Q ss_pred hCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHC------CCCCCHHHHHHHHHHHhccCChhHH
Q 044169 265 KCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMRED------GIDPNEYTFTVALASCASLRNSHMG 338 (742)
Q Consensus 265 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a 338 (742)
..|++++|...|+.+ ..+....+..+..+...+...+|+..++++... ...|+...+...+. ..+.+.+
T Consensus 105 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG----IFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH----TSCHHHH
T ss_pred HcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH----hcChHHH
Confidence 777777777777533 222222233334444445556677777776432 22344333332221 2222211
Q ss_pred HHHHHHHHHhCCCCc-hHHHHHHHHHHHhC--------CCHHHHHHHHHhc-CCCCC--------hhhHHHHHHHHHhCC
Q 044169 339 YMFHAQVIKRGMALG-DFVGTAIVDMYSGL--------GEIWEAKKQLKEM-GKSAS--------SVSWNAQIAGFFRNQ 400 (742)
Q Consensus 339 ~~i~~~~~~~g~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~~~~-~~~~~--------~~~~~~li~~~~~~g 400 (742)
...+.... ...+. ......+...+... |++++|...|+++ ...|+ ..+|..+...+...|
T Consensus 180 ~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTSS--NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCCC--SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhcc--ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 11110000 00111 11222333332222 3566677766665 22333 123555556666677
Q ss_pred CcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 044169 401 KTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFS 480 (742)
Q Consensus 401 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 480 (742)
++++|...|++.... .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|+
T Consensus 258 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 777777777776664 3445666666666667777777777776666553 3345556666666666666666666666
Q ss_pred hcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-
Q 044169 481 QLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILP- 556 (742)
Q Consensus 481 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p- 556 (742)
+.. +.+...|..+...|...|++++|+..++++.+.. +.+...+..+...+...|++++|.+.|+++.+...-.+
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 554 2334556666666666666666666666665531 22234555555566666666666666665543211001
Q ss_pred ---cHHHHHHHHHHHhhc----------CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044169 557 ---EEAHYSCMVDLLGRA----------GKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDP 621 (742)
Q Consensus 557 ---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 621 (742)
....+..+..+|.+. |++++|+..+++.. .+.+...|..+...+...|++++|...+++++++.|
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 111122333344444 45555554444432 122344444444444445555555555555555444
Q ss_pred CCc
Q 044169 622 DDA 624 (742)
Q Consensus 622 ~~~ 624 (742)
+++
T Consensus 494 ~~~ 496 (537)
T 3fp2_A 494 TMD 496 (537)
T ss_dssp -CH
T ss_pred CcH
Confidence 433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.8e-20 Score=197.93 Aligned_cols=367 Identities=10% Similarity=0.017 Sum_probs=233.2
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHH
Q 044169 250 LSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ---RNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVAL 326 (742)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 326 (742)
+.+...+..+...|.+.|++++|..+|+++.+ .+..+|..+..+|...|++++|+..|+++.+.+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 55677889999999999999999999998754 467889999999999999999999999998864 34577888899
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCch---HHHHHHHHH------------HHhCCCHHHHHHHHHhc--CCCCChhhH
Q 044169 327 ASCASLRNSHMGYMFHAQVIKRGMALGD---FVGTAIVDM------------YSGLGEIWEAKKQLKEM--GKSASSVSW 389 (742)
Q Consensus 327 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~---~~~~~li~~------------~~~~g~~~~A~~~~~~~--~~~~~~~~~ 389 (742)
..+...|++++|...++.+.+.. +.+. ..+..+... |...|++++|...|+++ ..+.+...+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999999998754 2233 555555443 55666666666666654 113345556
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 044169 390 NAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKC 469 (742)
Q Consensus 390 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 469 (742)
..++..|.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~---- 254 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV---- 254 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH----
Confidence 666666666666666666666655432 2234455555555555555555555555554432 1122222221000
Q ss_pred CCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcHHHHHHH
Q 044169 470 GSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-----NSTFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 470 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~ 544 (742)
. ....+..+...|.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|.+.
T Consensus 255 ---~------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 255 ---K------------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp ---H------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred ---H------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 0 0001122256666777777777777777663 444 23456666677777777777777
Q ss_pred HHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHH------------HHHcC-----C
Q 044169 545 FESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAA------------CRCHS-----D 605 (742)
Q Consensus 545 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~------------~~~~g-----~ 605 (742)
++.+.+. .+.+...|..++.+|...|++++|.+.++++. ..| +...+..+..+ |...| +
T Consensus 318 ~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 318 CSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 7776542 23345667777777777777777777776642 344 34445444422 22233 5
Q ss_pred HHHHHHHHHH-HHhcCCCCch----------hHHHHHHHHHhcCCHHHH
Q 044169 606 LKMAEFISKQ-ILELDPDDAA----------VYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 606 ~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~y~~~g~~~~A 643 (742)
.+++.+.+++ +++..|++.. .+..+..+|...|+.+++
T Consensus 396 ~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 5677888886 6777775321 455566666666655443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-19 Score=199.08 Aligned_cols=427 Identities=10% Similarity=-0.010 Sum_probs=274.8
Q ss_pred ccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHH
Q 044169 80 SRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLV 159 (742)
Q Consensus 80 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 159 (742)
.+.|++++|+..|+++....+. +..++..+..++...|+++.|...++.+++.. +.+..++..+.
T Consensus 36 ~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 36 FTAKNFNEAIKYYQYAIELDPN--------------EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHTTCCC-CHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhCCC--------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 5556666666666665555433 45555555555555566666666665555543 33445555555
Q ss_pred HHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHH
Q 044169 160 NMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQ 239 (742)
Q Consensus 160 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 239 (742)
.+|.+.|++++|...|+.+. .+....+..+..+...+...+|+..++.+.... |+
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~---------------------- 155 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EG---------------------- 155 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC----------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cc----------------------
Confidence 55555555555555554221 111112222233333333444444444443321 00
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcc---hHHHHHHHHHhC--------CCcchHHHHHH
Q 044169 240 LHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVI---SWTAIINGFKQH--------GDYEKPLRLVC 308 (742)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~ 308 (742)
......|+ ...+..|....+.+.+...+......+.. .+..+...+... |++++|+.+|+
T Consensus 156 -----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~ 226 (537)
T 3fp2_A 156 -----RGSQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYH 226 (537)
T ss_dssp --------CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHH
T ss_pred -----ccccccch----HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 00011122 22333445556666666666555544333 233333222222 35667777777
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CCCCCh
Q 044169 309 LMREDGIDPN-EYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GKSASS 386 (742)
Q Consensus 309 ~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~ 386 (742)
++.+.. |+ ...+..+ ..++..+...+...|++++|...|++. ...|+.
T Consensus 227 ~~l~~~--p~~~~~~~~~----------------------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~ 276 (537)
T 3fp2_A 227 SLLSAN--TVDDPLRENA----------------------------ALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP 276 (537)
T ss_dssp HHHC----CCCHHHHHHH----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHC--CCcchhhHHH----------------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCc
Confidence 776542 22 1111111 123445666788899999999999987 335668
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 044169 387 VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAY 466 (742)
Q Consensus 387 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 466 (742)
..|..+...|...|++++|+..|++..... +.+..++..+...+...|++++|...++.+.+.. +.+...+..+..+|
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 354 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLL 354 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 889999999999999999999999998864 3467789999999999999999999999998875 44568889999999
Q ss_pred HhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHhcc---
Q 044169 467 NKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGI-----RPTNSTFLAVLSACSHS--- 535 (742)
Q Consensus 467 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~t~~~ll~a~~~~--- 535 (742)
.+.|++++|...|+++. +.+...|..+...|...|++++|...|+++.+... ......+......+...
T Consensus 355 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 434 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999876 45667999999999999999999999999876421 11112344555677777
Q ss_pred -------CcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC
Q 044169 536 -------GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT 589 (742)
Q Consensus 536 -------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~ 589 (742)
|++++|...|+.+.+. .+.+...+..+..+|.+.|++++|.+.|++.. ..|+
T Consensus 435 ~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 435 DPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp ----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred cchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999999999999763 34456789999999999999999999999864 3444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-17 Score=171.37 Aligned_cols=305 Identities=11% Similarity=0.060 Sum_probs=192.8
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc--CCCCChhhHHHHHHHHHh
Q 044169 321 TFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM--GKSASSVSWNAQIAGFFR 398 (742)
Q Consensus 321 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~ 398 (742)
.+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++. ..+.+...|..+...+..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 34444445555555555555555555442 223444444445555555555555555443 102233444444455555
Q ss_pred CCCcHHHHHHHHHHhHcCCCC----ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 044169 399 NQKTEEAIEAFSQMVRNDAAC----DEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWED 474 (742)
Q Consensus 399 ~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 474 (742)
.|++++|...|++..+.. | +...+..+.... ....+..+...+...|++++
T Consensus 84 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCHHH
T ss_pred cCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCHHH
Confidence 555555555555444331 2 111111110000 00011223567778888888
Q ss_pred HHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 044169 475 AERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKE 551 (742)
Q Consensus 475 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 551 (742)
|.+.|+++. +.+...|..+...+...|++++|+..++++.+. .+.+..++..+...+...|++++|.+.++...+.
T Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 139 AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888888765 445667778888888888888888888888874 2334567777888888888888888888888653
Q ss_pred cCCCCcHHHHH------------HHHHHHhhcCCHHHHHHHHHhCC-CCCC-HH----HHHHHHHHHHHcCCHHHHHHHH
Q 044169 552 YGILPEEAHYS------------CMVDLLGRAGKLEIALIFISNLP-IKPT-AP----IWRPLFAACRCHSDLKMAEFIS 613 (742)
Q Consensus 552 ~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~----~~~~l~~~~~~~g~~~~a~~~~ 613 (742)
. +.+...+. .++..+.+.|++++|.+.++++. ..|+ .. .+..+...+...|++++|...+
T Consensus 218 ~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 218 D--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp C--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred C--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 2 22222222 33677889999999999988754 2343 32 3445677888999999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 614 KQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 614 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+++++.+|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999887643
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-17 Score=170.04 Aligned_cols=328 Identities=11% Similarity=0.018 Sum_probs=246.7
Q ss_pred CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHH
Q 044169 283 NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVD 362 (742)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 362 (742)
|+..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 35578888999999999999999999998763 3457788888899999999999999999999875 446788899999
Q ss_pred HHHhCCCHHHHHHHHHhc-CCCC----ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCH
Q 044169 363 MYSGLGEIWEAKKQLKEM-GKSA----SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSL 437 (742)
Q Consensus 363 ~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 437 (742)
.|...|++++|...|++. ...| +...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999988 3344 3334443321110 01122334445556666
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044169 438 ATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMV 514 (742)
Q Consensus 438 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 514 (742)
++|...++.+.+.. +.+...+..+..+|...|++++|...+++.. +.+...|..+...|...|++++|...+++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666553 4456667777777888888888888887765 3456678888888888888888888888887
Q ss_pred HcCCCCCH-HHHH------------HHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH--HHHHHHHHHHhhcCCHHHHHH
Q 044169 515 VEGIRPTN-STFL------------AVLSACSHSGLVQDGQKVFESMVKEYGILPEE--AHYSCMVDLLGRAGKLEIALI 579 (742)
Q Consensus 515 ~~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~ 579 (742)
+. .|+. ..+. .+...+...|++++|.+.++++.+...-.+.. ..+..+..+|...|++++|++
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 74 4443 3222 23556888999999999999987643221111 235568889999999999999
Q ss_pred HHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 580 FISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 580 ~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
.+++.. ..| +...|..+...+...|++++|...++++++++|+++.....+..++...+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 998764 334 78899999999999999999999999999999999999888888765543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-17 Score=168.30 Aligned_cols=287 Identities=10% Similarity=-0.009 Sum_probs=218.1
Q ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHhc--CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHH
Q 044169 351 ALGDFVGTAIVDMYSGLGEIWEAKKQLKEM--GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSIL 428 (742)
Q Consensus 351 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 428 (742)
+.+..++..+...+...|++++|.++|+++ ..+.+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344555666677777778888888877776 214455667777788888888888888888887753 33566777777
Q ss_pred HHhcCCC-CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHH
Q 044169 429 KACSLLP-SLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRAR 504 (742)
Q Consensus 429 ~~~~~~g-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 504 (742)
..+...| ++++|...++.+.+.. +.+...+..+..+|...|++++|...|++.. +.+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 8888888 8888888888887654 4456778888888888888888888888775 344567777888888889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-------CCCcHHHHHHHHHHHhhcCCHHHH
Q 044169 505 KAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYG-------ILPEEAHYSCMVDLLGRAGKLEIA 577 (742)
Q Consensus 505 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A 577 (742)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+..+|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999998888742 33456788888888888999999988888876321 133456788888888899999999
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhcCCH
Q 044169 578 LIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY-AEAGLQ 640 (742)
Q Consensus 578 ~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~ 640 (742)
++.+++.. .+.+...|..+...+...|++++|...++++++++|+++..+..++.++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 88888754 2345777888888888899999999999999999998888888888887 455554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-14 Score=165.91 Aligned_cols=378 Identities=12% Similarity=0.086 Sum_probs=269.2
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCC
Q 044169 221 YSTMLAICGSLSAIDEGKQLHAQTMKLQ--YLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHG 298 (742)
Q Consensus 221 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 298 (742)
....+++|...|.+.+|.++++...-.+ +..+....+.|+.+..+. +..+..++.++...-+ ...+...+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 3455667777788888888887776332 112345556666666665 4455555554443222 444667778888
Q ss_pred CcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Q 044169 299 DYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLK 378 (742)
Q Consensus 299 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 378 (742)
.+++|..+|++.. -.....+.++. ..+++++|.++.+.+ .++.+|..+..++...|++++|.+.|.
T Consensus 1064 lyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred CHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 8888888888852 11122233322 567788887777654 347788888888999999999998887
Q ss_pred hcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhH
Q 044169 379 EMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHV 458 (742)
Q Consensus 379 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~ 458 (742)
+. .|...|..++..+.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...+. + .++...
T Consensus 1130 KA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad 1197 (1630)
T 1xi4_A 1130 KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAH 1197 (1630)
T ss_pred hc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHH
Confidence 74 567778888888999999999999888776654 33333335788888888877544332 1 345556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 044169 459 GSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLV 538 (742)
Q Consensus 459 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 538 (742)
+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..+..+|...|++
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHH
Confidence 667888888899999999999885 48888999999999999999988876 3457888888888888888
Q ss_pred HHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 044169 539 QDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCH--SDLKMAEFISK 614 (742)
Q Consensus 539 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~--g~~~~a~~~~~ 614 (742)
..|...... +..+...+..++..|.+.|.+++|+.+++... .++ ....|.-|...+.+. ++..++.+.|.
T Consensus 1267 ~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1267 RLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 888876543 33466677889999999999999999998753 333 355565565665554 45666777777
Q ss_pred HHHhcCC-----CCchhHHHHHHHHHhcCCHHHHHH
Q 044169 615 QILELDP-----DDAAVYVTLSNMYAEAGLQADAEE 645 (742)
Q Consensus 615 ~~~~~~p-----~~~~~~~~l~~~y~~~g~~~~A~~ 645 (742)
.-+...| ++...|..+..+|.+.|+|+.|..
T Consensus 1341 ~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1341 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 6666655 678889999999999999999984
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-14 Score=161.16 Aligned_cols=421 Identities=13% Similarity=0.119 Sum_probs=262.6
Q ss_pred ChhhHHHHHHhhccccchHHHHHHHHHHHHhc--cCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHH
Q 044169 116 DKQFVIEVLSYCSREECLELGRRYHALITKTA--VCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGY 193 (742)
Q Consensus 116 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 193 (742)
++.-.....+++...|.+.++..+++.++-.+ +..+....+.|+....+. +.........+....+ ..-+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 44445566666667777777777777766332 113445566666666555 3344444444433222 34456667
Q ss_pred HhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHH
Q 044169 194 AKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAE 273 (742)
Q Consensus 194 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 273 (742)
...|.+++|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++.+.|++++|.
T Consensus 1060 i~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 777888888888877521 1111222222 456777777777653 34667778888888888888888
Q ss_pred HHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc
Q 044169 274 SVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALG 353 (742)
Q Consensus 274 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~ 353 (742)
+.|.+. .|...|..++.++.+.|++++|++.|...++.. ++....+.+..+|++.++++....+. + .++
T Consensus 1126 dsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1126 DSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred HHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 888654 666777778888888888888888887766653 33333334777777777776533332 1 334
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcC
Q 044169 354 DFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSL 433 (742)
Q Consensus 354 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 433 (742)
...+..+...|...|++++|..+|...+ .|..+...|++.|++++|.+.+++. .+..+|..+-.+|..
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA~------ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhh------HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 4555667778888888888888888753 7888888888888888888888764 355777777778888
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CchHHHHHHHHHHHc--CCHHHHHH
Q 044169 434 LPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAA---DVVSWNSMIKAYSQN--GRARKAII 508 (742)
Q Consensus 434 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~--g~~~~A~~ 508 (742)
.|++..|...... +..+...+..++..|.+.|.+++|..+++..... ....|+-|...|++. ++..++++
T Consensus 1263 ~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 7777777765443 2334555667788888888888888888766532 333566666666654 23444444
Q ss_pred HHHHHHHcCCCC------CHHHHHHHHHHHhccCcHHHHHHHH--------HHh--HHhcCCCCcHHHHHHHHHHHhhcC
Q 044169 509 LFEKMVVEGIRP------TNSTFLAVLSACSHSGLVQDGQKVF--------ESM--VKEYGILPEEAHYSCMVDLLGRAG 572 (742)
Q Consensus 509 ~~~~m~~~g~~p------~~~t~~~ll~a~~~~g~~~~a~~~~--------~~m--~~~~~~~p~~~~~~~l~~~~~~~g 572 (742)
+|..-.. ++| +...|.-+.-.|.+.|+++.|.... +.- .....-..+.+.|...+..|...+
T Consensus 1338 ~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1338 LFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 4443221 222 2345777777777778887776321 110 000112345666666666666555
Q ss_pred ---------------CHHHHHHHHHhC
Q 044169 573 ---------------KLEIALIFISNL 584 (742)
Q Consensus 573 ---------------~~~~A~~~~~~~ 584 (742)
+.+.+.++|.+.
T Consensus 1416 P~~lndLl~~l~~rlD~~R~V~l~~~~ 1442 (1630)
T 1xi4_A 1416 PLLLNDLLMVLSPRLDHTRAVNYFSKV 1442 (1630)
T ss_pred hHHHHHHHHHhhhcCChHHHHHHHHHc
Confidence 666666666643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-16 Score=163.81 Aligned_cols=266 Identities=12% Similarity=0.033 Sum_probs=229.4
Q ss_pred CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 044169 383 SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSL 462 (742)
Q Consensus 383 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~l 462 (742)
+.+...+..++..+...|++++|+++|+++.... +.+...+..++..+...|+.++|...+..+.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4566778888899999999999999999998864 3345566677788889999999999999998874 5567888999
Q ss_pred HHHHHhcC-CHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 044169 463 IEAYNKCG-SWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLV 538 (742)
Q Consensus 463 i~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 538 (742)
...|...| ++++|.+.|++.. +.+...|..+...|...|++++|+..++++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 9999999999876 3456789999999999999999999999999852 33356777788999999999
Q ss_pred HHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHHcCCHH
Q 044169 539 QDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-I----------KPTAPIWRPLFAACRCHSDLK 607 (742)
Q Consensus 539 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~l~~~~~~~g~~~ 607 (742)
++|.+.++++.+ ..+.+...+..++.+|.+.|++++|...+++.. . +.+..+|..+...+...|+++
T Consensus 176 ~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999975 334567789999999999999999999998753 0 334678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 608 MAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 608 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
+|...++++++..|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999876643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-15 Score=162.97 Aligned_cols=366 Identities=11% Similarity=0.014 Sum_probs=264.2
Q ss_pred ChhHHHHHHHHHHh----CCChHHHHHHHhccCC-CCcchHHHHHHHHHh----CCCcchHHHHHHHHHHCCCCCCHHHH
Q 044169 252 KTAVSNALLTMYIK----CGMMEDAESVFEGLVQ-RNVISWTAIINGFKQ----HGDYEKPLRLVCLMREDGIDPNEYTF 322 (742)
Q Consensus 252 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 322 (742)
+......|...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|+..|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44455555555555 5666666666655433 344555556666665 566666666666665543 33444
Q ss_pred HHHHHHHhc----cCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----CCCHHHHHHHHHhcCCCCChhhHHHHHH
Q 044169 323 TVALASCAS----LRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSG----LGEIWEAKKQLKEMGKSASSVSWNAQIA 394 (742)
Q Consensus 323 ~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~ 394 (742)
..+-..+.. .++.++|...++...+.| +...+..|...|.. .++.++|.+.|++.-...+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444444444 556666666666666654 34555566666665 6788888888887632456777888888
Q ss_pred HHHh----CCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 044169 395 GFFR----NQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSL----LPSLATCEQIHSRIVKSKFESNVHVGSSLIEAY 466 (742)
Q Consensus 395 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 466 (742)
.|.. .++.++|+..|++..+.| +...+..+...+.. .++.++|..+++...+.+ +...+..+..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 8877 788888988888887765 45566666666654 788899999988887754 445666777778
Q ss_pred Hh----cCCHHHHHHHHHhcC-CCCchHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 044169 467 NK----CGSWEDAERVFSQLT-AADVVSWNSMIKAYSQN-----GRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSG 536 (742)
Q Consensus 467 ~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 536 (742)
.. .++.++|.+.|++.. ..+...+..+...|... +++++|+..|++..+.| +...+..+...+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 77 889999999998876 34566788888888887 89999999999998864 3456666666776655
Q ss_pred ---cHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 044169 537 ---LVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR----AGKLEIALIFISNLPIKPTAPIWRPLFAACRC----HSD 605 (742)
Q Consensus 537 ---~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 605 (742)
++++|.+.|++..+. .+...+..|..+|.. .+++++|++.|++.....++..+..+...|.. .+|
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 789999999998763 467788888999988 89999999999987645578888888888888 899
Q ss_pred HHHHHHHHHHHHhcCCC---CchhHHHHHHHHHh
Q 044169 606 LKMAEFISKQILELDPD---DAAVYVTLSNMYAE 636 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~ 636 (742)
.++|...++++.+.+|+ ++.....|+.++..
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999999999854 77777777776654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-17 Score=168.55 Aligned_cols=347 Identities=11% Similarity=0.077 Sum_probs=163.1
Q ss_pred HhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHH
Q 044169 264 IKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHA 343 (742)
Q Consensus 264 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~ 343 (742)
-+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3678899999999999655 4899999999999999999999965 3677899999999999999999999888
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHH
Q 044169 344 QVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFT 423 (742)
Q Consensus 344 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 423 (742)
...+. .+++.+.+.++.+|.++|+++++.++++ .|+..+|+.++..|...|++++|...|..+ ..
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp -------------------------CHHHHTTTTT----CC----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 77764 4557889999999999999999988885 577789999999999999999999999987 47
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Q 044169 424 YSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRA 503 (742)
Q Consensus 424 ~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 503 (742)
|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 899999999999999999999987 378899999999999999999988777655 4444455688999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHhHHhcCCCC------cHHHHHHHHHHHhhcCCHH
Q 044169 504 RKAIILFEKMVVEGIRPTNSTFLAVLSACSH--SGLVQDGQKVFESMVKEYGILP------EEAHYSCMVDLLGRAGKLE 575 (742)
Q Consensus 504 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~l~~~~~~~g~~~ 575 (742)
++|+.+++...... +-....|+.+.-++++ .+++.+.++.|. +.-.++| +...|..++..|...++++
T Consensus 224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 99999999988542 2333456666555554 445555555543 2234444 3557899999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 044169 576 IALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 576 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
.|...+-+-+ |+.---..+.....+-.+.+.--++..-.++..| ...+.|..++...=+...+.+++++
T Consensus 300 ~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 300 NAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHH
Confidence 9988765543 2222222333444455554444444444444433 3345555555444455555555444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.7e-17 Score=168.72 Aligned_cols=280 Identities=10% Similarity=-0.024 Sum_probs=223.5
Q ss_pred HHhCCCHHHHHH-HHHhc-CC---CC--ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCC
Q 044169 364 YSGLGEIWEAKK-QLKEM-GK---SA--SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPS 436 (742)
Q Consensus 364 ~~~~g~~~~A~~-~~~~~-~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 436 (742)
+...|++++|.+ .|++. .. .| +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888887 77754 11 12 35678888999999999999999999998864 4467788888999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-CchHHHH---------------HHHHHH
Q 044169 437 LATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT--AA-DVVSWNS---------------MIKAYS 498 (742)
Q Consensus 437 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~---------------li~~~~ 498 (742)
+++|...++.+.+.. +.+..++..+..+|...|++++|.+.|+++. .| +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999998875 5577888999999999999999999999876 22 2222221 133344
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHH
Q 044169 499 QNGRARKAIILFEKMVVEGIRPT---NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLE 575 (742)
Q Consensus 499 ~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 575 (742)
..|++++|+..++++.+. .|+ ..++..+...+...|++++|...++++.+. .+.+...+..++.+|.+.|+++
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHH
Confidence 889999999999999985 454 678899999999999999999999999763 3445778999999999999999
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHhcCCHHH
Q 044169 576 IALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD-----------AAVYVTLSNMYAEAGLQAD 642 (742)
Q Consensus 576 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~y~~~g~~~~ 642 (742)
+|++.++++. .+.+...+..+...+...|++++|...+++++++.|++ ..++..++.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 9999999864 34468889999999999999999999999999998877 7899999999999999999
Q ss_pred HHHHHHH
Q 044169 643 AEEQRKL 649 (742)
Q Consensus 643 A~~~~~~ 649 (742)
|..++++
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 9988753
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-17 Score=165.76 Aligned_cols=344 Identities=12% Similarity=0.093 Sum_probs=120.1
Q ss_pred HhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHH
Q 044169 163 AKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHA 242 (742)
Q Consensus 163 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 242 (742)
-+.|++++|.+.+++++.++ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999996654 8999999999999999999999653 577899999999999999999999888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHH
Q 044169 243 QTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTF 322 (742)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 322 (742)
...+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77764 45678889999999999999999988864 67779999999999999999999999876 245
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCc
Q 044169 323 TVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKT 402 (742)
Q Consensus 323 ~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 402 (742)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+...|+ ....++..|.+.|++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad--~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHH--HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHh--hHHHHHHHHHHCCCH
Confidence 55555555555555555555444 1344455555555555555555443333221111 122344444444444
Q ss_pred HHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCHHHHHHHHH
Q 044169 403 EEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNK--CGSWEDAERVFS 480 (742)
Q Consensus 403 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~ 480 (742)
++|+.+++. ..... +-....|+-|.-+|++ -+++.+..+.|.
T Consensus 224 eEai~lLe~-----------------------------------aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 224 EELITMLEA-----------------------------------ALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHHHHHH-----------------------------------HTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHH-----------------------------------HhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 444444444 43322 2223444444444443 234455555554
Q ss_pred hcC---C-----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 044169 481 QLT---A-----ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT---NSTFLAVLSACSHSGLVQDGQKVFESMV 549 (742)
Q Consensus 481 ~~~---~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 549 (742)
.-. + .+...|.-+...|.+.++++.|... |.+. .|+ ...|.-++.--....-+-+|+.++-
T Consensus 268 ~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--- 339 (449)
T 1b89_A 268 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYL--- 339 (449)
T ss_dssp TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---
Confidence 332 1 2556788888888888888877763 4442 233 2334433332222223334444432
Q ss_pred HhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044169 550 KEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 550 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
. ..|. ..+-|+.++...=+...+..+|++..
T Consensus 340 ~---~~p~--~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 340 E---FKPL--LLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp H---HCGG--GHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred h---cCHH--HHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 1 1232 24555555555556666666665543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-14 Score=160.25 Aligned_cols=412 Identities=7% Similarity=0.023 Sum_probs=259.1
Q ss_pred ChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC--CCcchHHHHHHH-
Q 044169 217 NHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ--RNVISWTAIING- 293 (742)
Q Consensus 217 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~- 293 (742)
|...|..++.. .+.|++++|+.+++.+++.. +.+...|..++..+.+.|++++|..+|++... |++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 55667777763 56777888888888777653 55566777777777777888888888877754 555566666542
Q ss_pred HHhCCCcchHHH----HHHHHHH-CCCCCC-HHHHHHHHHHHhc---------cCChhHHHHHHHHHHHhCCCCchHHHH
Q 044169 294 FKQHGDYEKPLR----LVCLMRE-DGIDPN-EYTFTVALASCAS---------LRNSHMGYMFHAQVIKRGMALGDFVGT 358 (742)
Q Consensus 294 ~~~~g~~~~A~~----~~~~m~~-~g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~i~~~~~~~g~~~~~~~~~ 358 (742)
....|+.++|.+ +|++... .|..|+ ...|...+....+ .|+++.|..+|+..++........+|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 234566666655 5555433 244332 3334433333322 355555555555555421111112222
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHh------HcC---CCCCh--------
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMV------RND---AACDE-------- 421 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~g---~~p~~-------- 421 (742)
.........|. ..+..++. .+.+++.+|..++.++. +.. ++|+.
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 21111100000 00000000 02234555655555421 111 23331
Q ss_pred HHHHHHHHHhcC----CCCH----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHH
Q 044169 422 FTYSSILKACSL----LPSL----ATCEQIHSRIVKSKFESNVHVGSSLIEAYNK-------CGSWE-------DAERVF 479 (742)
Q Consensus 422 ~t~~~ll~~~~~----~g~~----~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~ 479 (742)
..|...+..... .++. ..+..+|+.+.... +.+...|..++..+.+ .|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 233333322211 1232 36677888877753 5567788888887775 68876 899999
Q ss_pred HhcCC---C-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 044169 480 SQLTA---A-DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN--STFLAVLSACSHSGLVQDGQKVFESMVKEYG 553 (742)
Q Consensus 480 ~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 553 (742)
++... | +...|..++..+.+.|++++|..+|+++++ +.|+. ..|...+..+.+.|++++|.++|++..+.
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-- 385 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-- 385 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 87763 3 466899999999999999999999999998 46653 46888888888899999999999998753
Q ss_pred CCCcHHHHHHHHHH-HhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch----h
Q 044169 554 ILPEEAHYSCMVDL-LGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA----V 626 (742)
Q Consensus 554 ~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~ 626 (742)
.+.+...|...+.. +...|+.++|..+|++.. ..| +...|..++....+.|+.++|..+++++++..|.++. .
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 12223333332222 346899999999998753 334 5888999999999999999999999999998776655 7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 627 YVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 627 ~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+...+......|+.+.+.++.+++.+.-
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 7778888888999999999988887533
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-15 Score=162.78 Aligned_cols=411 Identities=12% Similarity=0.103 Sum_probs=291.0
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 044169 181 LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALL 260 (742)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 260 (742)
.|...|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|..+|+++++.. |+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 36778999998 588999999999999998762 4466789999999999999999999999998774 5777777777
Q ss_pred HH-HHhCCChHHHHH----HHhccC-----C-CCcchHHHHHHHHHh---------CCCcchHHHHHHHHHHCCCCCCHH
Q 044169 261 TM-YIKCGMMEDAES----VFEGLV-----Q-RNVISWTAIINGFKQ---------HGDYEKPLRLVCLMREDGIDPNEY 320 (742)
Q Consensus 261 ~~-~~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~ 320 (742)
.. ....|+.++|.+ +|+... . .+...|...+....+ .|+++.|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 53 345688877765 666542 1 356678888877665 688999999999998731111122
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHh-------cC-----CCCC---
Q 044169 321 TFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKE-------MG-----KSAS--- 385 (742)
Q Consensus 321 t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~-----~~~~--- 385 (742)
.|..........+. .+...++. .+.+++..|..++.. +. .+|+
T Consensus 167 ~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 167 LWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 33222111100110 01111111 122344555544443 11 1232
Q ss_pred -----hhhHHHHHHHHHhC----CCc----HHHHHHHHHHhHcCCCCChHHHHHHHHHhcC-------CCCHH-------
Q 044169 386 -----SVSWNAQIAGFFRN----QKT----EEAIEAFSQMVRNDAACDEFTYSSILKACSL-------LPSLA------- 438 (742)
Q Consensus 386 -----~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~g~~~------- 438 (742)
...|...+...... ++. .++..+|++..... +-+...|......+.. .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 24566555433332 232 37788898887752 3456677777766664 78876
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-Cc-hHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044169 439 TCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT--AA-DV-VSWNSMIKAYSQNGRARKAIILFEKMV 514 (742)
Q Consensus 439 ~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 514 (742)
+|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++. .| +. ..|..++..+.+.|+.++|..+|++..
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 889999988863335568899999999999999999999999876 34 33 489999999999999999999999999
Q ss_pred HcCCCCC-HHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C---CC
Q 044169 515 VEGIRPT-NSTFLAVLSA-CSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-I---KP 588 (742)
Q Consensus 515 ~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p 588 (742)
+. .|+ ...|...... +...|++++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++.. . .|
T Consensus 384 ~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 384 ED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp TC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred hc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 75 343 3333332222 335899999999999998743 3457889999999999999999999999864 2 23
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 589 --TAPIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 589 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
....|...+.....+|+.+.+..+.+++.+..|+
T Consensus 460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 460 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 2458999999999999999999999999999884
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-14 Score=154.15 Aligned_cols=354 Identities=12% Similarity=0.042 Sum_probs=297.6
Q ss_pred CCCcchHHHHHHHHHh----CCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCC
Q 044169 281 QRNVISWTAIINGFKQ----HGDYEKPLRLVCLMREDGIDPNEYTFTVALASCAS----LRNSHMGYMFHAQVIKRGMAL 352 (742)
Q Consensus 281 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~ 352 (742)
..+..++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.++|...++...+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3467778888888888 899999999999998874 55667777777777 899999999999998876
Q ss_pred chHHHHHHHHHHHh----CCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh----CCCcHHHHHHHHHHhHcCCCCChHHH
Q 044169 353 GDFVGTAIVDMYSG----LGEIWEAKKQLKEMGKSASSVSWNAQIAGFFR----NQKTEEAIEAFSQMVRNDAACDEFTY 424 (742)
Q Consensus 353 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 424 (742)
+...+..|...|.. .++.++|...|++.-...+...+..+...|.. .++.++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 56677778888888 88999999999998435577888888888887 889999999999998875 66777
Q ss_pred HHHHHHhcC----CCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcC-CCCchHHHHHHH
Q 044169 425 SSILKACSL----LPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNK----CGSWEDAERVFSQLT-AADVVSWNSMIK 495 (742)
Q Consensus 425 ~~ll~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~ 495 (742)
..+...+.. .++.++|...++...+.+ +...+..+..+|.. .+++++|.+.|++.. ..+...+..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777776 899999999999998865 55677788888886 899999999999876 456677888888
Q ss_pred HHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 496 AYSQ----NGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHS-----GLVQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 496 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
.|.. .+++++|+..|++..+.| +...+..+...+... +++++|...|++..+. .+...+..+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Confidence 8888 899999999999998754 445666677777776 8999999999998763 24567788888
Q ss_pred HHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh---
Q 044169 567 LLGRAG---KLEIALIFISNLPIKPTAPIWRPLFAACRC----HSDLKMAEFISKQILELDPDDAAVYVTLSNMYAE--- 636 (742)
Q Consensus 567 ~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~--- 636 (742)
+|.+.| ++++|++.|++.....++..+..+...|.. .+++++|...++++.+.+ ++..+..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 888767 889999999987645688899999999988 899999999999999875 68899999999999
Q ss_pred -cCCHHHHHHHHHHHHhCCC
Q 044169 637 -AGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 637 -~g~~~~A~~~~~~m~~~~~ 655 (742)
.+++++|.+.+++..+.+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988774
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=166.72 Aligned_cols=259 Identities=10% Similarity=-0.014 Sum_probs=213.9
Q ss_pred ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044169 385 SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIE 464 (742)
Q Consensus 385 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 464 (742)
+...|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45668889999999999999999999998864 4467888999999999999999999999998875 456788999999
Q ss_pred HHHhcCCHHHHHHHHHhcCC--CC-----------chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHH
Q 044169 465 AYNKCGSWEDAERVFSQLTA--AD-----------VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRP---TNSTFLAV 528 (742)
Q Consensus 465 ~~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~l 528 (742)
+|.+.|++++|...|+++.. |+ ...+..+...+...|++++|+..++++.+. .| +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHH
Confidence 99999999999999998762 21 223344578899999999999999999985 44 46789999
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCH
Q 044169 529 LSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDL 606 (742)
Q Consensus 529 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~ 606 (742)
...+...|++++|.+.|+++.+. .+.+...|..++.+|.+.|++++|++.|+++. ..| +..+|..+...|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999763 34567789999999999999999999998864 344 588899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 044169 607 KMAEFISKQILELDPD------------DAAVYVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 607 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
++|...+++++++.|+ +..++..++.++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999998876 367899999999999999999887654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-15 Score=148.76 Aligned_cols=272 Identities=10% Similarity=-0.015 Sum_probs=217.7
Q ss_pred HHHHhCCCHHHHHHHHHhcC-CCCCh--hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHH
Q 044169 362 DMYSGLGEIWEAKKQLKEMG-KSASS--VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLA 438 (742)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~~~-~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 438 (742)
.-....|+++.|+..+++.. ..|+. .....+..+|...|++++|+..++. .-.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34456789999999988763 23332 3445678899999999999987654 23567778888999999999999
Q ss_pred HHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 044169 439 TCEQIHSRIVKSKFES-NVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEG 517 (742)
Q Consensus 439 ~a~~i~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 517 (742)
.|.+.++.+...+..| +...+..+..+|...|++++|.+.+++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 9999999998876444 567777888999999999999999998 567789999999999999999999999999985
Q ss_pred CCCCHHHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHH
Q 044169 518 IRPTNSTF---LAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPI 592 (742)
Q Consensus 518 ~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~ 592 (742)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.+++.. ..| ++.+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 5665322 22334445669999999999999874 45678889999999999999999999999864 344 6888
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 044169 593 WRPLFAACRCHSDLKM-AEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQR 647 (742)
Q Consensus 593 ~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 647 (742)
|..++..+...|+.++ +.+.++++++++|+++.+. +...+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 9999999999998865 6789999999999888654 4566667777665544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.9e-16 Score=157.91 Aligned_cols=260 Identities=7% Similarity=-0.068 Sum_probs=198.3
Q ss_pred hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044169 386 SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEA 465 (742)
Q Consensus 386 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 465 (742)
...|..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445566666777777777777777766653 2355566666667777777777777777776653 4456667777777
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCchHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044169 466 YNKCGSWEDAERVFSQLT---AADVVSWNSM--------------IK-AYSQNGRARKAIILFEKMVVEGIRPTNSTFLA 527 (742)
Q Consensus 466 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 527 (742)
|...|++++|.+.|+++. +.+...+..+ .. .+...|++++|...++++.+.. +.+...+..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 777778777777777665 1222233322 22 3677889999999999998853 335678888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCC
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSD 605 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~ 605 (742)
+...+...|++++|.+.++++.+. .+.+...+..++.+|.+.|++++|.+.++++. .+.+...|..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999998763 34457788999999999999999999998864 33468889999999999999
Q ss_pred HHHHHHHHHHHHhcCCC------------CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 606 LKMAEFISKQILELDPD------------DAAVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
+++|...++++++..|+ ++.++..++.+|...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999998 6889999999999999999999988644
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-15 Score=151.38 Aligned_cols=247 Identities=9% Similarity=0.049 Sum_probs=203.2
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHcCCCCCh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044169 393 IAGFFRNQKTEEAIEAFSQMVRNDAACDE--FTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCG 470 (742)
Q Consensus 393 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 470 (742)
|+-....|++.+|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34566789999999999876543 3443 3556678899999999999876644 23667788899999999999
Q ss_pred CHHHHHHHHHhcC----CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 044169 471 SWEDAERVFSQLT----AA-DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVF 545 (742)
Q Consensus 471 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 545 (742)
+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 455777788999999999999999987 456678888999999999999999999
Q ss_pred HHhHHhcCCCCcHHH---HHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 044169 546 ESMVKEYGILPEEAH---YSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELD 620 (742)
Q Consensus 546 ~~m~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 620 (742)
+.+.+. .|+... ...++..+...|++++|..+|+++. .+.+...|+.+..++.+.|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999764 355331 2334455666799999999999875 45578899999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCHHH-HHHHHHHHHhCC
Q 044169 621 PDDAAVYVTLSNMYAEAGLQAD-AEEQRKLMKMKE 654 (742)
Q Consensus 621 p~~~~~~~~l~~~y~~~g~~~~-A~~~~~~m~~~~ 654 (742)
|+++.++..++.++...|++++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999986 568888887644
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-15 Score=157.86 Aligned_cols=232 Identities=9% Similarity=-0.002 Sum_probs=196.9
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHH
Q 044169 420 DEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKA 496 (742)
Q Consensus 420 ~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 496 (742)
+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++. +.+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568888889999999999999999999875 5678899999999999999999999999886 4467799999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHH
Q 044169 497 YSQNGRARKAIILFEKMVVEGIRPTNS-----------TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMV 565 (742)
Q Consensus 497 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 565 (742)
|...|++++|+..++++.+. .|+.. .+..+...+...|++++|.++++++.+...-.++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 44432 233457789999999999999999987533323688999999
Q ss_pred HHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 044169 566 DLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 643 (742)
.+|.+.|++++|++.++++. .+.+..+|..+..++...|++++|+..+++++++.|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999864 3446889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 044169 644 EEQRKLMKMKE 654 (742)
Q Consensus 644 ~~~~~~m~~~~ 654 (742)
.+.++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999987643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-14 Score=156.55 Aligned_cols=365 Identities=11% Similarity=0.017 Sum_probs=198.7
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHhccCC------------CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCC-----
Q 044169 252 KTAVSNALLTMYIKCGMMEDAESVFEGLVQ------------RNVISWTAIINGFKQHGDYEKPLRLVCLMREDG----- 314 (742)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----- 314 (742)
....||.|...|...|+.++|++.|++..+ ...++|+.+...|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 356678888888888888888888765421 134567777777777888888877777664320
Q ss_pred -CCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CC-CCChhhHH
Q 044169 315 -IDP-NEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GK-SASSVSWN 390 (742)
Q Consensus 315 -~~p-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~ 390 (742)
..+ ...++.....++... ..+++++|.+.|++. .. +.+...+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~---------------------------------~~~~y~~A~~~~~kal~~~p~~~~~~~ 176 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKC---------------------------------GGNQNERAKVCFEKALEKKPKNPEFTS 176 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHH---------------------------------CTTHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHH---------------------------------ccccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 011 112222222222211 123345555555543 11 22233333
Q ss_pred HHHHH---HHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 044169 391 AQIAG---FFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKAC----SLLPSLATCEQIHSRIVKSKFESNVHVGSSLI 463 (742)
Q Consensus 391 ~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li 463 (742)
.+... +...++.++|++.+++..+.. +.+..++..+...+ ...++.++|.+.++...+.. +.+..++..+.
T Consensus 177 ~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg 254 (472)
T 4g1t_A 177 GLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAA 254 (472)
T ss_dssp HHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHH
Confidence 33222 233455556666666555432 12233333333222 22345556666666555543 33455556666
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHH-------------------cCCHHHHHHHHHHHHHcCCCCC
Q 044169 464 EAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQ-------------------NGRARKAIILFEKMVVEGIRPT 521 (742)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p~ 521 (742)
..|.+.|++++|...|++.. +.+..+|..+...|.. .+.+++|...+++..+. .|+
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~ 332 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDN 332 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCc
Confidence 66666666666666666554 2233444444444322 23466788888888774 444
Q ss_pred H-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH--HHHHHHHH-HHhhcCCHHHHHHHHHhCC-CCCCHHHHHHH
Q 044169 522 N-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEE--AHYSCMVD-LLGRAGKLEIALIFISNLP-IKPTAPIWRPL 596 (742)
Q Consensus 522 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 596 (742)
. .++..+...+...|++++|++.|++..+. ...+.. ..+..+.. .+...|+.++|+..+++.. ..|+...+...
T Consensus 333 ~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~ 411 (472)
T 4g1t_A 333 LFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM 411 (472)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH
Confidence 3 56778888999999999999999988752 222221 12333333 3457789999999998753 56664433322
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccE
Q 044169 597 FAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSW 663 (742)
Q Consensus 597 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 663 (742)
...+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+.......+|
T Consensus 412 ---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 412 ---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp ---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 3456677888899999999999999999999999999999999988766443333344
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-15 Score=157.83 Aligned_cols=255 Identities=11% Similarity=0.017 Sum_probs=205.0
Q ss_pred HHhCCCcHHHHH-HHHHHhHcCC---CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044169 396 FFRNQKTEEAIE-AFSQMVRNDA---ACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGS 471 (742)
Q Consensus 396 ~~~~g~~~~A~~-~~~~m~~~g~---~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 471 (742)
+...|++++|++ .|++...... ..+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 444588899998 8886654321 1134567788889999999999999999999874 5567889999999999999
Q ss_pred HHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHH---------------HHHHH
Q 044169 472 WEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS-TFLA---------------VLSAC 532 (742)
Q Consensus 472 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---------------ll~a~ 532 (742)
+++|.+.|+++. +.+..+|..+...|...|++++|+..++++.+. .|+.. .+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999876 456779999999999999999999999999985 44432 2211 23334
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHH
Q 044169 533 SHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAE 610 (742)
Q Consensus 533 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~ 610 (742)
...|++++|...++++.+...-.++..++..++.+|.+.|++++|++.++++. .+.+..+|..+...+...|++++|.
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 48899999999999998753332357889999999999999999999998864 3446889999999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 611 FISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 611 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
..+++++++.|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-13 Score=149.92 Aligned_cols=384 Identities=10% Similarity=0.012 Sum_probs=196.7
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHchhC--------CCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhC------
Q 044169 183 IASCNCLLAGYAKNALFDQAFSFFLKLDGI--------DVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQ------ 248 (742)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------ 248 (742)
...||.|...+...|++++|++.|++..+. .-+....+|..+..++...|++++|...++.+.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345777777777778888888877765431 011223456666666666666666666666554421
Q ss_pred C-CCChhHHHHHHHHHHhC--CChHHHHHHHhccCC--C-CcchHHHHHHH---HHhCCCcchHHHHHHHHHHCCCCCCH
Q 044169 249 Y-LSKTAVSNALLTMYIKC--GMMEDAESVFEGLVQ--R-NVISWTAIING---FKQHGDYEKPLRLVCLMREDGIDPNE 319 (742)
Q Consensus 249 ~-~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~ 319 (742)
. .....++..+..++.+. +++++|...|++..+ | +...+..+... +...++.++|++.+++..+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~------- 203 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR------- 203 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH-------
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-------
Confidence 0 01122333333333322 235555555554422 2 22233332222 2233444455555444433
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHH----hCCCHHHHHHHHHhc--CCCCChhhHHHHH
Q 044169 320 YTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYS----GLGEIWEAKKQLKEM--GKSASSVSWNAQI 393 (742)
Q Consensus 320 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~--~~~~~~~~~~~li 393 (742)
.. +.+..++..+...+. ..|+.++|.+.+++. ..+.+...+..+.
T Consensus 204 ----------------------------l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg 254 (472)
T 4g1t_A 204 ----------------------------LN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAA 254 (472)
T ss_dssp ----------------------------HC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred ----------------------------cC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 22 112223333322222 235566677777654 1155677788889
Q ss_pred HHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 044169 394 AGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWE 473 (742)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 473 (742)
..|...|++++|+..|++..+.. +-+..++..+...+...+. . ..... ...........+..+
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~-----~----~~~~~-------~~~~~~~~~~~~~~~ 317 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVF-----Q----VMNLR-------ENGMYGKRKLLELIG 317 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHH-----H----HHHC-------------CHHHHHHHHH
T ss_pred HHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHH-----H----hhhHH-------HHHHHHHHHHHhhHH
Confidence 99999999999999999887753 2234455554443321100 0 00000 000111111223456
Q ss_pred HHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHH
Q 044169 474 DAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS--TFLAVLS-ACSHSGLVQDGQKVFES 547 (742)
Q Consensus 474 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~ 547 (742)
+|...|++.. +.+..+|..+...|...|++++|+..|++..+....|... .+..+.. .....|++++|++.|++
T Consensus 318 ~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 318 HAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE 397 (472)
T ss_dssp HHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777654 4566788999999999999999999999999853333221 2233322 34577999999999998
Q ss_pred hHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 044169 548 MVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 548 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
..+ +.|+........ +.+.+++++.. .+.+..+|..+...+...|++++|++.++++++++|.+|.
T Consensus 398 al~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 398 GVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------
T ss_pred HHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 865 445543322222 23333443321 2346788999999999999999999999999999998887
Q ss_pred hHHHHH
Q 044169 626 VYVTLS 631 (742)
Q Consensus 626 ~~~~l~ 631 (742)
+...+|
T Consensus 466 a~~~~G 471 (472)
T 4g1t_A 466 ASSWNG 471 (472)
T ss_dssp ------
T ss_pred HhhcCC
Confidence 766554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-13 Score=141.10 Aligned_cols=264 Identities=8% Similarity=0.021 Sum_probs=147.6
Q ss_pred cchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 044169 284 VISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDM 363 (742)
Q Consensus 284 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 363 (742)
...|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|+++.|...++.+.+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 85 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------------- 85 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------
Confidence 3445566666677777777777777766542 1233334434444444444444444444433321
Q ss_pred HHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHH--------------HH
Q 044169 364 YSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSI--------------LK 429 (742)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--------------l~ 429 (742)
+.+...|..+...|...|++++|+..++++...... +...+..+ ..
T Consensus 86 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 86 -------------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------
T ss_pred -------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHh
Confidence 334455556666666666666666666666554211 11111111 11
Q ss_pred -HhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHH
Q 044169 430 -ACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARK 505 (742)
Q Consensus 430 -~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 505 (742)
.+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.++++. +.+...|..+...|...|++++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence 2556667777777777766654 3355666667777777777777777776654 3345566666777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC----------CcHHHHHHHHHHHhhcCCHH
Q 044169 506 AIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGIL----------PEEAHYSCMVDLLGRAGKLE 575 (742)
Q Consensus 506 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~----------p~~~~~~~l~~~~~~~g~~~ 575 (742)
|...++++.+.. +.+...+..+...+...|++++|.+.++++.+...-. .+...+..+..++.+.|+++
T Consensus 225 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 225 ALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 777777766641 2234556666666677777777777776665421110 02445566666666666666
Q ss_pred HHHHHHHhC
Q 044169 576 IALIFISNL 584 (742)
Q Consensus 576 ~A~~~~~~~ 584 (742)
+|..++++.
T Consensus 304 ~A~~~~~~~ 312 (327)
T 3cv0_A 304 LVELTYAQN 312 (327)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHHHH
Confidence 666666543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.9e-14 Score=137.04 Aligned_cols=215 Identities=13% Similarity=0.026 Sum_probs=156.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----C----chHHHHHHH
Q 044169 426 SILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA--A----D----VVSWNSMIK 495 (742)
Q Consensus 426 ~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~ 495 (742)
.+...+...|++++|...+..+.+.. .+...+..+..+|...|++++|.+.|++... | + ...|..+..
T Consensus 10 ~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence 33334444444444444444444443 3444555555555555555555555555431 1 1 456777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHH
Q 044169 496 AYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLE 575 (742)
Q Consensus 496 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 575 (742)
.|...|++++|+..|+++.+. .|+. ..+...|++++|.+.++.+.+ ..+.+...+..++..+...|+++
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHH
Confidence 888888888888888888873 5553 345566788899999888865 22334557888889999999999
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 576 IALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 576 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
+|++.+++.. .+.+...|..+...+...|++++|...++++++.+|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999998764 34468889999999999999999999999999999999999999999999999999999999888753
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.6e-16 Score=171.00 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=121.1
Q ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHhc------CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHH
Q 044169 352 LGDFVGTAIVDMYSGLGEIWEAKKQLKEM------GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYS 425 (742)
Q Consensus 352 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 425 (742)
.-..+|++||++|++.|++++|.++|++| ++.||+++||+||.+||+.|+.++|.++|++|.+.|+.||.+||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 34567888888999999999999888665 458999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCC-HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CchHHHHHHHHHHH
Q 044169 426 SILKACSLLPS-LATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAA-----DVVSWNSMIKAYSQ 499 (742)
Q Consensus 426 ~ll~~~~~~g~-~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~ 499 (742)
++|.++++.|+ .+.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.++...+..+ .+.+...|.+.|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 99999999987 4789999999999999999999999998887776666555554444321 12334445555555
Q ss_pred cC
Q 044169 500 NG 501 (742)
Q Consensus 500 ~g 501 (742)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 44
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=168.41 Aligned_cols=127 Identities=10% Similarity=0.126 Sum_probs=104.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 044169 453 ESNVHVGSSLIEAYNKCGSWEDAERVFSQLT-------AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTF 525 (742)
Q Consensus 453 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 525 (742)
..-..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445688888888888888888888887653 678889999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHH
Q 044169 526 LAVLSACSHSGL-VQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIF 580 (742)
Q Consensus 526 ~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 580 (742)
+++|.++++.|+ .++|.++|++|.+ .|+.||..+|++++....+.+-++...++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999998888887 4788899999966 58999999998888777666555544444
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.1e-14 Score=134.95 Aligned_cols=195 Identities=14% Similarity=0.079 Sum_probs=155.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHH
Q 044169 453 ESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAV 528 (742)
Q Consensus 453 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l 528 (742)
+++...+..+...+.+.|++++|...|++.. +.+...|..+...+.+.|++++|+..+++..+. .|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 4566778888888999999999999998875 346678888999999999999999999999884 5654 678888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHH
Q 044169 529 LSACSHS-----------GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPTAPIWRPL 596 (742)
Q Consensus 529 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 596 (742)
..++... |++++|+..+++..+. -+.+...+..+..+|...|++++|++.|++.. ...++..+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8889888 9999999999999763 23356788899999999999999999998864 12778899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 597 FAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 597 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
...+...|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-13 Score=134.16 Aligned_cols=233 Identities=12% Similarity=0.011 Sum_probs=183.1
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCC--CCc----hhHHH
Q 044169 387 VSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKF--ESN----VHVGS 460 (742)
Q Consensus 387 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~--~~~----~~~~~ 460 (742)
..|..+...+...|++++|+..|++..+.. .+..++..+...+...|++++|...+..+.+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456667777778888888888888877766 6677777777788888888888888877765421 111 57778
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCc
Q 044169 461 SLIEAYNKCGSWEDAERVFSQLT--AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGL 537 (742)
Q Consensus 461 ~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 537 (742)
.+...|.+.|++++|...|++.. .++ ...+...|++++|...++++... .|+. ..+..+...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcC
Confidence 88888889999999999888876 333 24566778899999999998874 5554 568888888999999
Q ss_pred HHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044169 538 VQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQ 615 (742)
Q Consensus 538 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 615 (742)
+++|.+.++++.+. .+.+...+..++.+|.+.|++++|++.+++.. .+.+...|..+...+...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999998763 34467788899999999999999999998764 334588899999999999999999999999
Q ss_pred HHhcC------CCCchhHHHHHH
Q 044169 616 ILELD------PDDAAVYVTLSN 632 (742)
Q Consensus 616 ~~~~~------p~~~~~~~~l~~ 632 (742)
++++. |++...+..+..
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHhChhhcCCCchHHHHHHHHH
Confidence 99998 877766666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-13 Score=135.29 Aligned_cols=241 Identities=11% Similarity=-0.024 Sum_probs=188.3
Q ss_pred hCCCcHHHHHHHHHHhHcCCC---CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 044169 398 RNQKTEEAIEAFSQMVRNDAA---CDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWED 474 (742)
Q Consensus 398 ~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 474 (742)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 456778888888888775321 135567777888888888888888888888764 4567888889999999999999
Q ss_pred HHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 044169 475 AERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKE 551 (742)
Q Consensus 475 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 551 (742)
|.+.|++.. +.+...|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999998876 346778999999999999999999999999984 566655555556667789999999999888763
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 044169 552 YGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-----APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 552 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
.+++...+ .++..+...++.++|++.+++.. ..|+ ...|..+...+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 33444444 47778888899999999998765 2222 567888999999999999999999999999997755
Q ss_pred hHHHHHHHHHhcCCHHHHHHHH
Q 044169 626 VYVTLSNMYAEAGLQADAEEQR 647 (742)
Q Consensus 626 ~~~~l~~~y~~~g~~~~A~~~~ 647 (742)
.+ +.++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 66888899999998765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-13 Score=133.27 Aligned_cols=244 Identities=14% Similarity=0.049 Sum_probs=123.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc-CC-CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCC--hHHHHHHHHHhcCC
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEM-GK-SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACD--EFTYSSILKACSLL 434 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~ 434 (742)
.....+...|++++|...|++. .. +.+...|..+...|...|++++|+..|++....+..|+ ...|..+...+...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3445555666666666666554 11 22334555556666666666666666666555221111 11244444445555
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044169 435 PSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMV 514 (742)
Q Consensus 435 g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 514 (742)
|++++|...++.+.+.. +.+.. .|..+...|...|++++|+..|++..
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~-------------------------------~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLD-------------------------------MYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTH-------------------------------HHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred ccHHHHHHHHHHHHhcC-cccHH-------------------------------HHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 55555555555444432 22333 44444444455555555555554444
Q ss_pred HcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCC---HHHHHHHHHhCC----C
Q 044169 515 VEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGK---LEIALIFISNLP----I 586 (742)
Q Consensus 515 ~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~ 586 (742)
+. .|+. ..+..+...+...+++++|.+.|+++.+. .+.+...+..+..++...|+ +++|...+++.. .
T Consensus 136 ~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 211 (272)
T 3u4t_A 136 RP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP 211 (272)
T ss_dssp CS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG
T ss_pred hc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc
Confidence 32 2222 23333331222233555555555555432 11223344444444544444 444444443321 1
Q ss_pred CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 587 KPT------APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 587 ~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
.|+ ..+|..+...+...|++++|...++++++++|+++.+...+..+....+
T Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 212 GGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 122 2466777888889999999999999999999999988888777665544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-12 Score=122.48 Aligned_cols=197 Identities=11% Similarity=0.032 Sum_probs=149.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSA 531 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 531 (742)
+...+..+...|...|++++|.+.|+++. +.+...|..+...|...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 45566677777778888888888877665 3455677778888888888888888888887742 3345677777788
Q ss_pred Hhcc-CcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHH
Q 044169 532 CSHS-GLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLK 607 (742)
Q Consensus 532 ~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~ 607 (742)
+... |++++|.+.++.+.+ .+..|+ ...+..++.++...|++++|++.++++. .+.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888765 223333 5567778888888888888888887653 2335777888888888888888
Q ss_pred HHHHHHHHHHhcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 608 MAEFISKQILELDP-DDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 608 ~a~~~~~~~~~~~p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
+|...++++++..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888888888 88888888888888888888888888887643
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.8e-12 Score=137.54 Aligned_cols=368 Identities=12% Similarity=0.048 Sum_probs=179.1
Q ss_pred HHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh---HHHHHHHhccCCCCcchHHHHHHHHHhCC-----
Q 044169 227 ICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMM---EDAESVFEGLVQRNVISWTAIINGFKQHG----- 298 (742)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g----- 298 (742)
.+.+.|++++|.+++....+.| +...+..|..+|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 3344455556666665555544 222233344445555555 66666666665555555665655444444
Q ss_pred CcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChh---HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC----CHH
Q 044169 299 DYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSH---MGYMFHAQVIKRGMALGDFVGTAIVDMYSGLG----EIW 371 (742)
Q Consensus 299 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~ 371 (742)
++++|+..|++..+.|... .+..+-..+...+..+ .+.+.+......|. ......|...|...+ ..+
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHH
Confidence 4556666666666654322 3333333333332222 22222222222221 223333344444443 233
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhCC---CcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 044169 372 EAKKQLKEMGKSASSVSWNAQIAGFFRNQ---KTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIV 448 (742)
Q Consensus 372 ~A~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 448 (742)
.+..+++... ..+...+..+...|...| +.++|+..|++..+.|
T Consensus 163 ~a~~~~~~a~-~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-------------------------------- 209 (452)
T 3e4b_A 163 DVERICKAAL-NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-------------------------------- 209 (452)
T ss_dssp HHHHHHHHHT-TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--------------------------------
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--------------------------------
Confidence 3333333332 333335555555555555 5555555555554443
Q ss_pred HhCCCCchhHHHHHHHHHHhc----CCHHHHHHHHHhcCCCCchHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCC
Q 044169 449 KSKFESNVHVGSSLIEAYNKC----GSWEDAERVFSQLTAADVVSWNSMIKA-Y--SQNGRARKAIILFEKMVVEGIRPT 521 (742)
Q Consensus 449 ~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~ 521 (742)
+++...+..|..+|... +++++|.+.|++....++..+..|... | ...+++++|+..|++..+.| +
T Consensus 210 ----~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~ 282 (452)
T 3e4b_A 210 ----TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---Q 282 (452)
T ss_dssp ----CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---C
T ss_pred ----CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---C
Confidence 23333333344444333 456666666665553344455555555 3 34677888888888777765 4
Q ss_pred HHHHHHHHHHHhccC-----cHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHH
Q 044169 522 NSTFLAVLSACSHSG-----LVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR----AGKLEIALIFISNLPIKPTAPI 592 (742)
Q Consensus 522 ~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~ 592 (742)
...+..+...|. .| ++++|.+.|++.. .-+...+..|..+|.. ..++++|.+.|++.....+...
T Consensus 283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A 356 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSA 356 (452)
T ss_dssp HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHH
Confidence 455555555555 44 7888888877663 3455666667776665 3478888888877653445555
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH--HhcCCHHHHHHHHHHHH
Q 044169 593 WRPLFAACRC----HSDLKMAEFISKQILELDPDDAAVYVTLSNMY--AEAGLQADAEEQRKLMK 651 (742)
Q Consensus 593 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y--~~~g~~~~A~~~~~~m~ 651 (742)
...|...|.. ..|.++|...++++.+.++.+ ....+..+. ...++..+|.++.+.-.
T Consensus 357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5566665553 457888888888888876533 333333332 23345566666655544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-12 Score=125.86 Aligned_cols=197 Identities=7% Similarity=-0.064 Sum_probs=144.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044169 456 VHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSAC 532 (742)
Q Consensus 456 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 532 (742)
...+..+...|...|++++|.+.|+++. +.+...|..+...|...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4556666677777777777777777664 3355677777777888888888888888777642 23456677777777
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHH
Q 044169 533 SHSGLVQDGQKVFESMVKEYGILP-EEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMA 609 (742)
Q Consensus 533 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a 609 (742)
...|++++|.++++++.+ .+..| +...+..++.+|...|++++|.+.+++.. .+.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888877754 22334 45567777788888888888888887653 233577777788888888888888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 610 EFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 610 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
...++++++..|++...+..++.+|...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 888888888888888888888888888888888888888876543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.8e-13 Score=128.61 Aligned_cols=175 Identities=11% Similarity=0.042 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044169 457 HVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACS 533 (742)
Q Consensus 457 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 533 (742)
..+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 136 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLV 136 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 333444444444444444444444433 2233445555555555566666666665555531 223344555555555
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044169 534 HSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEF 611 (742)
Q Consensus 534 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~ 611 (742)
..|++++|.+.++++.+. .+.+...+..++.++.+.|++++|++.++++. .+.+..+|..+...+...|++++|..
T Consensus 137 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 214 (243)
T 2q7f_A 137 KLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214 (243)
T ss_dssp HTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHH
Confidence 666666666666655442 12334455555556666666666666555432 22245556666666666666666666
Q ss_pred HHHHHHhcCCCCchhHHHHHHHH
Q 044169 612 ISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 612 ~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
.++++++.+|+++.++..+..+.
T Consensus 215 ~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 215 MLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHccCcchHHHHHHHHHHH
Confidence 66666666666665555554443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=6e-12 Score=123.52 Aligned_cols=205 Identities=13% Similarity=0.052 Sum_probs=142.2
Q ss_pred hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044169 386 SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEA 465 (742)
Q Consensus 386 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 465 (742)
...|..+...+...|++++|++.|+++.... +.+...+..+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------------------------~~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------------------------PSSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------------------------CChHHHHHHHHHH
Confidence 4556666667777777777777777665542 2233344445555
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHH
Q 044169 466 YNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDG 541 (742)
Q Consensus 466 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 541 (742)
|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.++++.+.+..|+. ..+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555543 234456666777777777777777777777663345543 5667777778888888888
Q ss_pred HHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044169 542 QKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILEL 619 (742)
Q Consensus 542 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 619 (742)
.+.++++.+. .+.+...+..++.+|.+.|++++|.+.++++. .+.+...+..+...+...|+.++|...++++++.
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888887653 23346677888888888888888888887753 2345777888888889999999999999999999
Q ss_pred CCCCchhHH
Q 044169 620 DPDDAAVYV 628 (742)
Q Consensus 620 ~p~~~~~~~ 628 (742)
.|+++....
T Consensus 239 ~p~~~~~~~ 247 (252)
T 2ho1_A 239 YPGSLEYQE 247 (252)
T ss_dssp CTTSHHHHH
T ss_pred CCCCHHHHH
Confidence 998776544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-12 Score=122.60 Aligned_cols=196 Identities=13% Similarity=0.016 Sum_probs=116.8
Q ss_pred CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHH
Q 044169 383 SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSL 462 (742)
Q Consensus 383 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~l 462 (742)
+++...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4455666666667777777777777777766543 2345556666666666666666666666666653 3345566666
Q ss_pred HHHHHhc-----------CCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044169 463 IEAYNKC-----------GSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAV 528 (742)
Q Consensus 463 i~~~~~~-----------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 528 (742)
..+|.+. |++++|...|++.. +.+...|..+...|...|++++|+..|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 6666666 77777777776654 2345566667777777777777777777777654 555666667
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044169 529 LSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNL 584 (742)
Q Consensus 529 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (742)
..++...|++++|+..|+...+. .+.+...+..+..++.+.|++++|++.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777777777776552 2334556666677777777777777766654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-11 Score=121.65 Aligned_cols=224 Identities=10% Similarity=-0.019 Sum_probs=128.8
Q ss_pred ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhCCCCchhHHH
Q 044169 385 SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSL----LPSLATCEQIHSRIVKSKFESNVHVGS 460 (742)
Q Consensus 385 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~ 460 (742)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 44555666666666666666666666665522 23344444444444 455555555555444432
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--
Q 044169 461 SLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQ----NGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSH-- 534 (742)
Q Consensus 461 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-- 534 (742)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 33444455555555 555666666666555543 44455555555555
Q ss_pred --cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 044169 535 --SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR----AGKLEIALIFISNLPIKPTAPIWRPLFAACRC----HS 604 (742)
Q Consensus 535 --~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g 604 (742)
.+++++|.+.|++..+. + +...+..+..+|.. .+++++|++.+++.....+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 56666666666665442 2 34445555555555 66666666666654323345556666666666 66
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 044169 605 DLKMAEFISKQILELDPDDAAVYVTLSNMYAE----AGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 605 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~~ 654 (742)
++++|...++++++.+| +..+..++.+|.. .|++++|.+.+++..+.+
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777777777766654 5666677777777 777777777777666554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.4e-12 Score=134.21 Aligned_cols=345 Identities=11% Similarity=0.019 Sum_probs=172.5
Q ss_pred HHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCh---hHHHHHHccCCCCCcccHHHHHHHHHhCC--
Q 044169 123 VLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDI---KSMVAVVKQMPYLDIASCNCLLAGYAKNA-- 197 (742)
Q Consensus 123 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 197 (742)
+...+.+.|++++|.+++....+.| ++..+..|..+|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4445566789999999999998876 334455666777778888 89999998877667777888877666655
Q ss_pred ---ChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC---
Q 044169 198 ---LFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAI---DEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGM--- 268 (742)
Q Consensus 198 ---~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 268 (742)
++++|++.|++..+.|. ...+..+...+...+.. ..+.+.+......| +......|...|...+.
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 67899999998887653 22555555555544433 33444444444444 34566667777777764
Q ss_pred -hHHHHHHHhccCCCCcchHHHHHHHHHhCC---CcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHH
Q 044169 269 -MEDAESVFEGLVQRNVISWTAIINGFKQHG---DYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQ 344 (742)
Q Consensus 269 -~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~ 344 (742)
.+++..+++.....++..+..+...|...| +.++|++.|++..+.|. ++...+..+-..+...
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g------------ 226 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDA------------ 226 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCG------------
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCC------------
Confidence 444555566666666667778888887777 77778887777776652 2222222222222221
Q ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHH-H--HhCCCcHHHHHHHHHHhHcCCCCCh
Q 044169 345 VIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAG-F--FRNQKTEEAIEAFSQMVRNDAACDE 421 (742)
Q Consensus 345 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~ 421 (742)
....++.++|.+.|++.- +.+...+..+... | ...++.++|+..|++..+.| +.
T Consensus 227 -------------------~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~ 283 (452)
T 3e4b_A 227 -------------------TLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QP 283 (452)
T ss_dssp -------------------GGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CH
T ss_pred -------------------CCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 000134455555555444 3344444444444 2 23455555555555555444 23
Q ss_pred HHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcC-CCCchHHH
Q 044169 422 FTYSSILKACSLLP-----SLATCEQIHSRIVKSKFESNVHVGSSLIEAYNK----CGSWEDAERVFSQLT-AADVVSWN 491 (742)
Q Consensus 422 ~t~~~ll~~~~~~g-----~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~ 491 (742)
..+..+...|. .| +.++|...|+... +.+......|..+|.. ..+.++|...|++.. ..+.....
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~ 358 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADF 358 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHH
Confidence 33333333332 22 4444444444443 1233333444444443 225555555555443 22333444
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 044169 492 SMIKAYSQ----NGRARKAIILFEKMVVEG 517 (742)
Q Consensus 492 ~li~~~~~----~g~~~~A~~~~~~m~~~g 517 (742)
.|...|.. ..+.++|..+|+...+.|
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 44444432 235556666666555544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=127.72 Aligned_cols=198 Identities=12% Similarity=0.146 Sum_probs=156.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044169 454 SNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLS 530 (742)
Q Consensus 454 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 530 (742)
.....+..+...+...|++++|...|+++. +.+...|..+...|...|++++|+..++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 345667777888889999999999998875 3466788999999999999999999999999852 335678888999
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKM 608 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 608 (742)
.+...|++++|.+.++++.+. .+.+...+..++.++.+.|++++|++.++++. .+.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999763 34567788899999999999999999998864 34468889999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 609 AEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 609 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
|...++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999987644
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-11 Score=119.28 Aligned_cols=201 Identities=12% Similarity=0.025 Sum_probs=137.4
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHc-CC
Q 044169 427 ILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQN-GR 502 (742)
Q Consensus 427 ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~ 502 (742)
+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|++.. +.+...|..+...|... |+
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 14 LAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc
Confidence 3333333444444444444333332 2234455556666666666666666666554 33455677777778888 88
Q ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHH
Q 044169 503 ARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFI 581 (742)
Q Consensus 503 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (742)
+++|+..++++.+.+..|+. ..+..+..++...|++++|.+.++++.+. .+.+...+..++.++.+.|++++|.+.+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYF 170 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888774334543 56777778888888888888888888653 2334667888888888889999988888
Q ss_pred HhCC--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 044169 582 SNLP--IK-PTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTL 630 (742)
Q Consensus 582 ~~~~--~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 630 (742)
+++. .+ .+...+..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 171 KKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 8753 23 4667777777778899999999999999999999887766544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-11 Score=121.26 Aligned_cols=227 Identities=11% Similarity=-0.055 Sum_probs=158.7
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh----CCCcHHHHHHHHHHhHcCCCCChHHHHHHH
Q 044169 353 GDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFR----NQKTEEAIEAFSQMVRNDAACDEFTYSSIL 428 (742)
Q Consensus 353 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 428 (742)
+...+..+...|...|++++|...|++.-...+..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5667788889999999999999999988435567788889999999 999999999999998876 666777777
Q ss_pred HHhcC----CCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHH----c
Q 044169 429 KACSL----LPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQ----N 500 (742)
Q Consensus 429 ~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~ 500 (742)
..+.. .++.++|...++...+.+ +...+..+. ..|.. .
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg-------------------------------~~~~~~~~~~ 127 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLG-------------------------------GIYHDGKVVT 127 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH-------------------------------HHHHHCSSSC
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHH-------------------------------HHHHcCCCcc
Confidence 77766 777777777777766543 334444444 44444 5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh----cC
Q 044169 501 GRARKAIILFEKMVVEGIRPTNSTFLAVLSACSH----SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR----AG 572 (742)
Q Consensus 501 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g 572 (742)
+++++|+..|++..+.+ +...+..+...+.. .+++++|.+.|++..+. .+...+..+..+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCc
Confidence 55666666666655543 33444455555555 66666666666666542 234555666666766 77
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCC
Q 044169 573 KLEIALIFISNLPIKPTAPIWRPLFAACRC----HSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 573 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~ 623 (742)
++++|++.+++.....+...+..+...+.. .+++++|...++++++++|++
T Consensus 201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 777777777665422336666777777777 788888888888888888743
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=6.1e-12 Score=130.62 Aligned_cols=246 Identities=13% Similarity=0.069 Sum_probs=197.4
Q ss_pred hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044169 386 SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPS-LATCEQIHSRIVKSKFESNVHVGSSLIE 464 (742)
Q Consensus 386 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~i~~~~~~~~~~~~~~~~~~li~ 464 (742)
...|+.+...+.+.|++++|+..|++.+... +-+...|..+...+...|+ +++|...++.+.+.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3567778888888999999999999988764 3356677888888888886 999999999888875 556788889999
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc-cCcHH
Q 044169 465 AYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSH-SGLVQ 539 (742)
Q Consensus 465 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~~ 539 (742)
+|.+.|++++|...|+++. ..+...|..+..++.+.|++++|+..|+++++. .|+ ...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999876 456778999999999999999999999999985 555 4678888888888 56656
Q ss_pred HH-----HHHHHHhHHhcCCCCcHHHHHHHHHHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC-------
Q 044169 540 DG-----QKVFESMVKEYGILPEEAHYSCMVDLLGRAG--KLEIALIFISNLPIKP-TAPIWRPLFAACRCHS------- 604 (742)
Q Consensus 540 ~a-----~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g------- 604 (742)
+| ++.+++.++. -+-+...|..+..+|...| ++++|++.+.++...| +...+..+...+.+.|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 66 4778877652 2335667888888898888 6899999888775444 4677888888887764
Q ss_pred -C-HHHHHHHHHHH-HhcCCCCchhHHHHHHHHHhc
Q 044169 605 -D-LKMAEFISKQI-LELDPDDAAVYVTLSNMYAEA 637 (742)
Q Consensus 605 -~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~y~~~ 637 (742)
+ .++|+++++++ ++++|.....|..++..+...
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 899998888888888776543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.44 E-value=7.4e-12 Score=116.31 Aligned_cols=165 Identities=16% Similarity=0.114 Sum_probs=136.4
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHH
Q 044169 486 DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCM 564 (742)
Q Consensus 486 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 564 (742)
+...|..+...|.+.|++++|++.|++.++. .|+. ..+..+..++...|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4567888888888888888888888888874 5544 67788888888888888888888888652 33455667777
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHH
Q 044169 565 VDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQAD 642 (742)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 642 (742)
...+...+++++|.+.+.+.. .+.+...+..+...+...|++++|++.++++++.+|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888888899999988887754 334678888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 044169 643 AEEQRKLMKMKE 654 (742)
Q Consensus 643 A~~~~~~m~~~~ 654 (742)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999887644
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-11 Score=119.52 Aligned_cols=239 Identities=13% Similarity=0.021 Sum_probs=156.5
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-CCCCCh----hhHHHHHH
Q 044169 320 YTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-GKSASS----VSWNAQIA 394 (742)
Q Consensus 320 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~li~ 394 (742)
..+......+...|+++.|...++.+++.. +.+...+..+...|...|++++|...|++. ...++. ..|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345556677889999999999999999865 334557888889999999999999999987 212232 23889999
Q ss_pred HHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 044169 395 GFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWED 474 (742)
Q Consensus 395 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 474 (742)
.|...|++++|+..|++..+.. +.+..++..+...+. ..|++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~-----------------------------------~~~~~~~ 126 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFY-----------------------------------NKGNFPL 126 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH-----------------------------------HTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHH-----------------------------------HccCHHH
Confidence 9999999999999999998864 223445555544444 4455555
Q ss_pred HHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCc---HHHHHHHHHH
Q 044169 475 AERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGL---VQDGQKVFES 547 (742)
Q Consensus 475 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~ 547 (742)
|...|++.. +.+...|..+...+...+++++|+..|+++.+. .|+ ...+..+..++...|+ +++|...+++
T Consensus 127 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 127 AIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 555555444 223344555552333344777777777777663 344 3455556666666666 6666666666
Q ss_pred hHHhcCCCCc------HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHH
Q 044169 548 MVKEYGILPE------EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLF 597 (742)
Q Consensus 548 m~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 597 (742)
+.+...-.|+ ...|..+...|.+.|++++|.+.+++.. ..| +...+..+.
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence 6553322333 1456667777777788888877777653 334 344444433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=5.8e-12 Score=130.82 Aligned_cols=227 Identities=8% Similarity=0.056 Sum_probs=193.0
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhcC---CCCchHHHHHHHH
Q 044169 421 EFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGS-WEDAERVFSQLT---AADVVSWNSMIKA 496 (742)
Q Consensus 421 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~ 496 (742)
...|..+...+...|++++|...++.+++.. +.+..+|+.+..+|.+.|+ +++|...|++.. ..+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3456777778888999999999999999875 5567899999999999997 999999999887 4467799999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh-cCCH
Q 044169 497 YSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR-AGKL 574 (742)
Q Consensus 497 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~-~g~~ 574 (742)
+...|++++|+..|+++++. .|+ ...|..+..++...|++++|+..++++++. -+-+...|+.+..+|.+ .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999985 565 478999999999999999999999999873 23467789999999999 6665
Q ss_pred HHH-----HHHHHhCC-CCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC-------
Q 044169 575 EIA-----LIFISNLP-IKP-TAPIWRPLFAACRCHS--DLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG------- 638 (742)
Q Consensus 575 ~~A-----~~~~~~~~-~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g------- 638 (742)
++| ++.+++.. ..| +...|..+...+...| ++++|...++++ +.+|+++.++..++++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 47776653 345 6788999999998888 689999999998 899999999999999999985
Q ss_pred --CHHHHHHHHHHH-HhC
Q 044169 639 --LQADAEEQRKLM-KMK 653 (742)
Q Consensus 639 --~~~~A~~~~~~m-~~~ 653 (742)
.+++|.++++++ .+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 358999999998 543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.2e-12 Score=133.02 Aligned_cols=263 Identities=14% Similarity=0.099 Sum_probs=150.1
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCC----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----CCCC-chhHH
Q 044169 389 WNAQIAGFFRNQKTEEAIEAFSQMVRNDAACD----EFTYSSILKACSLLPSLATCEQIHSRIVKS----KFES-NVHVG 459 (742)
Q Consensus 389 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~~-~~~~~ 459 (742)
+......+...|++++|+..|++....+. .+ ...+..+...+...|+++.|...+..+.+. +..| ...++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 33444445555555555555555444321 11 123444444555555555555555443321 1111 13445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 044169 460 SSLIEAYNKCGSWEDAERVFSQLTA-----AD----VVSWNSMIKAYSQNGR--------------------ARKAIILF 510 (742)
Q Consensus 460 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 510 (742)
..+...|...|++++|...+++... .+ ..++..+...|...|+ +++|+..+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 5556666666666666666655431 11 2356666666666677 77777766
Q ss_pred HHHHHc----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHH
Q 044169 511 EKMVVE----GIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE----EAHYSCMVDLLGRAGKLEIALIFI 581 (742)
Q Consensus 511 ~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 581 (742)
++..+. +-.|.. .++..+...+...|++++|.+.+++..+...-.++ ...+..+..+|...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 665432 111211 34666666777777777777777776542211122 225667777777777777777777
Q ss_pred HhCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHHhcCCHHHHHHHH
Q 044169 582 SNLP----IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPDD------AAVYVTLSNMYAEAGLQADAEEQR 647 (742)
Q Consensus 582 ~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~A~~~~ 647 (742)
++.. ..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6542 1112 4456667777777888888888888777763322 556777888888888888888877
Q ss_pred HHHHh
Q 044169 648 KLMKM 652 (742)
Q Consensus 648 ~~m~~ 652 (742)
++..+
T Consensus 331 ~~al~ 335 (406)
T 3sf4_A 331 EKHLE 335 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.5e-12 Score=137.61 Aligned_cols=207 Identities=12% Similarity=0.027 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044169 438 ATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSW-EDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKM 513 (742)
Q Consensus 438 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 513 (742)
+.+...+....+.. +.+...+..+...|...|++ ++|.+.|++.. +.+...|..+...|...|++++|+..|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444433322 34566777777777788888 88888887765 335668888999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc--------CCHHH
Q 044169 514 VVEGIRPTNSTFLAVLSACSHS---------GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA--------GKLEI 576 (742)
Q Consensus 514 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~ 576 (742)
.+ +.|+...+..+..++... |++++|++.+++..+. .+.+...|..+..+|... |++++
T Consensus 164 l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 87 468877888888899998 9999999999998763 234577888899999988 99999
Q ss_pred HHHHHHhCC-CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 044169 577 ALIFISNLP-IKP----TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 577 A~~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
|++.|++.. ..| +...|..+..++...|++++|...++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999998864 344 7889999999999999999999999999999999999999999999999999999875543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.9e-12 Score=134.25 Aligned_cols=261 Identities=12% Similarity=0.058 Sum_probs=167.7
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHcCCCCCh----HHHHHHHHHhcCCCCHHHHHHHHHHHHHh----CC-CCchhHHHH
Q 044169 391 AQIAGFFRNQKTEEAIEAFSQMVRNDAACDE----FTYSSILKACSLLPSLATCEQIHSRIVKS----KF-ESNVHVGSS 461 (742)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~-~~~~~~~~~ 461 (742)
.+...+...|++++|+..|++..+.+.. +. ..+..+...+...|++++|...++.+.+. +. +.....+..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444555566666666666655554211 11 24455555555566666666665554432 11 122355666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---------CCchHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHH
Q 044169 462 LIEAYNKCGSWEDAERVFSQLTA---------ADVVSWNSMIKAYSQNGR-----------------ARKAIILFEKMVV 515 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~ 515 (742)
+...|...|++++|...|++... ....+|..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 66677777777777777665541 122366667777777777 7777777776544
Q ss_pred c----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 044169 516 E----GIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE----EAHYSCMVDLLGRAGKLEIALIFISNLP- 585 (742)
Q Consensus 516 ~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 585 (742)
. +-.|.. .++..+...+...|++++|.+.+++..+...-.++ ...+..+..+|...|++++|.+.+++..
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 111222 35677777888888888888888877653211112 2267778888888888888888887653
Q ss_pred ---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 586 ---IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPD------DAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 586 ---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
...+ ..++..+...+...|++++|...++++++..++ ...++..++.+|...|++++|.+.+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1111 456777888888999999999999988886432 245788899999999999999999888764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-11 Score=126.29 Aligned_cols=262 Identities=15% Similarity=0.108 Sum_probs=175.7
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHcCCCCC----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----CCCC-chhHHHH
Q 044169 391 AQIAGFFRNQKTEEAIEAFSQMVRNDAACD----EFTYSSILKACSLLPSLATCEQIHSRIVKS----KFES-NVHVGSS 461 (742)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~~-~~~~~~~ 461 (742)
.....+...|++++|+..|++..+... .+ ...+..+...+...|+++.|...+..+.+. +..+ ...++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 334455556666666666666555421 11 234455555566666666666665554322 2111 2455666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-----CCC----chHHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q 044169 462 LIEAYNKCGSWEDAERVFSQLT-----AAD----VVSWNSMIKAYSQNGR--------------------ARKAIILFEK 512 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~ 512 (742)
+...|...|++++|...+++.. ..+ ..++..+...|...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 7777777788877777777654 122 2366777777888888 8888888877
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHh
Q 044169 513 MVVE----GIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE----EAHYSCMVDLLGRAGKLEIALIFISN 583 (742)
Q Consensus 513 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (742)
.... +..|. ...+..+...+...|++++|.+.+++..+...-.++ ...+..+..+|...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6532 11222 235777778888899999999988887643211112 23677888899999999999988876
Q ss_pred CC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 044169 584 LP----IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPD------DAAVYVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 584 ~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
.. ..++ ..++..+...+...|++++|...++++++..|. ...++..++.+|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 53 1122 456777888899999999999999999887442 245788999999999999999999998
Q ss_pred HHhC
Q 044169 650 MKMK 653 (742)
Q Consensus 650 m~~~ 653 (742)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8754
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-09 Score=118.74 Aligned_cols=417 Identities=11% Similarity=0.025 Sum_probs=271.8
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCC---hHHHHHHHHHHHHhC-CCCChhHH
Q 044169 181 LDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSA---IDEGKQLHAQTMKLQ-YLSKTAVS 256 (742)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~ 256 (742)
.|..+|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.++ .+.+..+|+..+... ..|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47788999999998889999999999999875 35566677777877777788 999999999888764 23777788
Q ss_pred HHHHHHHHhCCCh--------HHHHHHHhccC------CC-CcchHHHHHHHHHh---------CCCcchHHHHHHHHHH
Q 044169 257 NALLTMYIKCGMM--------EDAESVFEGLV------QR-NVISWTAIINGFKQ---------HGDYEKPLRLVCLMRE 312 (742)
Q Consensus 257 ~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 312 (742)
...+....+.++. +...++|+... ++ +...|...+..... +++.+.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8777766665543 23346666532 22 34567777765443 2345567777777764
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-------CC--C
Q 044169 313 DGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-------GK--S 383 (742)
Q Consensus 313 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~--~ 383 (742)
.....-..+|.......... +...+..++.+. ..+++.|...+.++ .. +
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~-~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDV-NQLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHH-CTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred CccHHHHHHHHHHHHHHHhc-CcchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 21111122332211111110 111122221111 01222233333221 00 0
Q ss_pred -----------C--C------hhhHHHHHHHHHhCCC-------cHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCH
Q 044169 384 -----------A--S------SVSWNAQIAGFFRNQK-------TEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSL 437 (742)
Q Consensus 384 -----------~--~------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 437 (742)
| + ...|...+.---..+. .+.+..+|++.... ++-+...|...+.-+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 1 0 1335555543333221 23455677777665 244666777777777777888
Q ss_pred HHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC------------chHHH
Q 044169 438 ATCE-QIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA-------------AD------------VVSWN 491 (742)
Q Consensus 438 ~~a~-~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~ 491 (742)
+.|. .+++..... ++.+...+-..+....+.|+++.|.++|+++.. |+ ...|.
T Consensus 360 ~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 8886 999988875 456677788888889999999999999988752 31 23688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHh
Q 044169 492 SMIKAYSQNGRARKAIILFEKMVVE-GIRPTNSTFLAVLSACSH-SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLG 569 (742)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 569 (742)
..+....+.|..+.|..+|.++++. + .+....|...+..-.+ .++.+.|.++|+..++.+ +.+...+...++...
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHH
Confidence 8888888899999999999999875 2 1122334332222223 355899999999998854 345667788899999
Q ss_pred hcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 044169 570 RAGKLEIALIFISNLP-IKP----TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
..|+.+.|..+|++.. ..| ....|...+..-.++|+.+.+..+.+++.+..|+++.
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 9999999999999865 223 3567999999999999999999999999999997653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.5e-12 Score=131.57 Aligned_cols=254 Identities=11% Similarity=0.067 Sum_probs=163.6
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHhHc----CCCC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----CCCC-chh
Q 044169 388 SWNAQIAGFFRNQKTEEAIEAFSQMVRN----DAAC-DEFTYSSILKACSLLPSLATCEQIHSRIVKS----KFES-NVH 457 (742)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~~-~~~ 457 (742)
.|..+...|...|++++|...+++.... +-.| ...++..+...+...|++++|...+....+. +..+ ...
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 128 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHH
Confidence 3444455555555555555555543321 1111 1234444555555556666665555544332 1011 134
Q ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHHhcC-----CC----CchHHHHHHHHHHHcCCHHHHHH
Q 044169 458 VGSSLIEAYNKCGS--------------------WEDAERVFSQLT-----AA----DVVSWNSMIKAYSQNGRARKAII 508 (742)
Q Consensus 458 ~~~~li~~~~~~g~--------------------~~~A~~~~~~~~-----~~----~~~~~~~li~~~~~~g~~~~A~~ 508 (742)
++..+...|...|+ +++|.+.+.+.. .. ...+|..+...|...|++++|+.
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 56666777777777 777777766543 11 12367778888888899999998
Q ss_pred HHHHHHHcC-CCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc----HHHHHHHHHHHhhcCCHHHHHH
Q 044169 509 LFEKMVVEG-IRPTN----STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE----EAHYSCMVDLLGRAGKLEIALI 579 (742)
Q Consensus 509 ~~~~m~~~g-~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 579 (742)
.+++..+.. -.++. .++..+...+...|++++|...+++..+...-.++ ..++..+..+|...|++++|.+
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 888876531 01221 36777888888999999999999887643211112 4567788899999999999999
Q ss_pred HHHhCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHHhcCCHH
Q 044169 580 FISNLP----IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELD------PDDAAVYVTLSNMYAEAGLQA 641 (742)
Q Consensus 580 ~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~ 641 (742)
.+++.. ..++ ..++..+...+...|++++|...+++++++. +....++..++.+|...|+..
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 887653 1122 5567788888999999999999999998863 223567888899998888764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-11 Score=121.88 Aligned_cols=219 Identities=14% Similarity=-0.014 Sum_probs=179.1
Q ss_pred hcCCCCHHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHH
Q 044169 431 CSLLPSLATCEQIHSRIVKSKF---ESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRAR 504 (742)
Q Consensus 431 ~~~~g~~~~a~~i~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 504 (742)
....|++++|...++.+.+... +.+..++..+...|...|++++|...|++.. +.+...|..+...|...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 3456889999999999988632 1246788899999999999999999999876 446789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044169 505 KAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNL 584 (742)
Q Consensus 505 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (742)
+|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+. .|+..........+...|++++|...+++.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999852 334678999999999999999999999999763 355444445555667889999999999764
Q ss_pred C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 585 P--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD----DAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 585 ~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
. .+++...| .++..+...++.++|...++++++..|. ++..+..++.+|...|++++|.+.++++.+..
T Consensus 171 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 3 23343444 4677788888999999999999887663 37889999999999999999999999998654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.33 E-value=5.5e-11 Score=110.32 Aligned_cols=167 Identities=16% Similarity=0.094 Sum_probs=141.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSA 531 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 531 (742)
+..+|..+...|.+.|++++|.+.|++.. +.+..+|..+...|.+.|++++|+..+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 56678889999999999999999999876 4466789999999999999999999999998752 3344667777788
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHcCCHHHH
Q 044169 532 CSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IK-PTAPIWRPLFAACRCHSDLKMA 609 (742)
Q Consensus 532 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~a 609 (742)
+...++++.+.+.+....+. .+.+...+..+..+|.+.|++++|++.|++.. .. .+..+|..+...+.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88999999999999998763 34456788899999999999999999998864 34 4688899999999999999999
Q ss_pred HHHHHHHHhcCCCCc
Q 044169 610 EFISKQILELDPDDA 624 (742)
Q Consensus 610 ~~~~~~~~~~~p~~~ 624 (742)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.4e-11 Score=126.87 Aligned_cols=262 Identities=10% Similarity=0.001 Sum_probs=172.2
Q ss_pred HHHHHHhCCCHHHHHHHHHhc-CCCC-Ch----hhHHHHHHHHHhCCCcHHHHHHHHHHhHc----CC-CCChHHHHHHH
Q 044169 360 IVDMYSGLGEIWEAKKQLKEM-GKSA-SS----VSWNAQIAGFFRNQKTEEAIEAFSQMVRN----DA-ACDEFTYSSIL 428 (742)
Q Consensus 360 li~~~~~~g~~~~A~~~~~~~-~~~~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~ll 428 (742)
+...+...|++++|...|++. ...| +. ..|..+...|...|++++|+..|++.... +- .....++..+.
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 334455555555555555554 1112 21 24555556666666666666666655432 11 11234555566
Q ss_pred HHhcCCCCHHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHHhcCC-----------------HHHHHHHHHhcCC--
Q 044169 429 KACSLLPSLATCEQIHSRIVKS----KF-ESNVHVGSSLIEAYNKCGS-----------------WEDAERVFSQLTA-- 484 (742)
Q Consensus 429 ~~~~~~g~~~~a~~i~~~~~~~----~~-~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~-- 484 (742)
..+...|++++|...+..+.+. +- +....++..+...|...|+ +++|.+.+++...
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6666667777766666655442 11 1224566777778888888 8888777776531
Q ss_pred ---C----CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 044169 485 ---A----DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGI-RPT----NSTFLAVLSACSHSGLVQDGQKVFESMVKEY 552 (742)
Q Consensus 485 ---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 552 (742)
. ....|..+...|...|++++|+..+++..+... .++ ...+..+...+...|++++|.+.+++..+..
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1 223777888889999999999999988775311 112 1267788888999999999999998876532
Q ss_pred CCCC----cHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 044169 553 GILP----EEAHYSCMVDLLGRAGKLEIALIFISNLP----IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELD 620 (742)
Q Consensus 553 ~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 620 (742)
.-.. ....+..+..+|...|++++|.+.+++.. ..++ ..++..+...+...|++++|...+++++++.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 1111 14567888999999999999999988753 1112 4467778888999999999999999999987
Q ss_pred C
Q 044169 621 P 621 (742)
Q Consensus 621 p 621 (742)
+
T Consensus 374 ~ 374 (411)
T 4a1s_A 374 X 374 (411)
T ss_dssp C
T ss_pred h
Confidence 6
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.8e-12 Score=126.11 Aligned_cols=236 Identities=12% Similarity=0.080 Sum_probs=119.6
Q ss_pred hhhHHHHHHHHHhCCCcHHHHHHHHHHhHc-------CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh------CC
Q 044169 386 SVSWNAQIAGFFRNQKTEEAIEAFSQMVRN-------DAACDEFTYSSILKACSLLPSLATCEQIHSRIVKS------KF 452 (742)
Q Consensus 386 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~------~~ 452 (742)
..+|..+...+...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+.+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777778888888888888888877652 11223344555556666666666666666655442 11
Q ss_pred CC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCH-HH
Q 044169 453 ES-NVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVE------GIRPTN-ST 524 (742)
Q Consensus 453 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t 524 (742)
.+ ...++..+...|...|++++|.+ .++++.+. +-.|+. ..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~-------------------------------~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEP-------------------------------LCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHH-------------------------------HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHH-------------------------------HHHHHHHHHHHhcCCCChHHHHH
Confidence 11 23344444444445555555444 44444432 111221 23
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC----------CCC
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEY-----GILP-EEAHYSCMVDLLGRAGKLEIALIFISNLP----------IKP 588 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p 588 (742)
+..+...+...|++++|.++++++.+.. +..| ....+..+..+|.+.|++++|.+.++++. ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4444555555555555555555554320 1011 12344555555555666665555554432 001
Q ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 589 T-------APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 589 ~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
. ...+..+...+...+.+.++...++.+....|.++.++..++.+|...|++++|.+.+++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 111122222233444555666677777777777788888888888888888888888887654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.9e-10 Score=112.97 Aligned_cols=218 Identities=12% Similarity=0.126 Sum_probs=137.6
Q ss_pred HHHHHHHHHHhHcCCCCChHHHHHHHHHhc-------CCCCH-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 044169 403 EEAIEAFSQMVRNDAACDEFTYSSILKACS-------LLPSL-------ATCEQIHSRIVKSKFESNVHVGSSLIEAYNK 468 (742)
Q Consensus 403 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~g~~-------~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 468 (742)
++|...|++..... +-+...|..+...+. ..|+. ++|..+++...+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555666655532 223444444444432 23554 6677777766663113345567777777777
Q ss_pred cCCHHHHHHHHHhcC--CC-Cch-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccCcHHHHHH
Q 044169 469 CGSWEDAERVFSQLT--AA-DVV-SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACS-HSGLVQDGQK 543 (742)
Q Consensus 469 ~g~~~~A~~~~~~~~--~~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 543 (742)
.|++++|.++|++.. .| +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777665 22 233 67777777777788888888888877642 223334433333222 2578888888
Q ss_pred HHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044169 544 VFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPI----KP--TAPIWRPLFAACRCHSDLKMAEFISKQIL 617 (742)
Q Consensus 544 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 617 (742)
+|+...+.. +.+...|..++..+.+.|++++|..+|++... .| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888776632 23556777777777788888888888776531 33 35677777777777888888888888888
Q ss_pred hcCCCCc
Q 044169 618 ELDPDDA 624 (742)
Q Consensus 618 ~~~p~~~ 624 (742)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8777644
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.1e-11 Score=133.08 Aligned_cols=162 Identities=19% Similarity=0.180 Sum_probs=137.0
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHH
Q 044169 487 VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMV 565 (742)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 565 (742)
..+|+.|...|.+.|++++|++.|++.++. .|+. ..+..+..++.+.|++++|++.|++.++. -+-+...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 457788888888888888888888888874 5664 67888888888888888888888888753 123466788888
Q ss_pred HHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 044169 566 DLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 643 (742)
.+|.+.|++++|++.|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..|+.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 99999999999999888754 344 5888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 044169 644 EEQRKLMKM 652 (742)
Q Consensus 644 ~~~~~~m~~ 652 (742)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887753
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-08 Score=111.10 Aligned_cols=423 Identities=9% Similarity=-0.011 Sum_probs=231.8
Q ss_pred CcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 044169 84 YSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMYA 163 (742)
Q Consensus 84 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 163 (742)
...+.+..|++.+..++. |..+|..++..+.+.+.+..++.+++.++.. ++.....|...+..-.
T Consensus 47 ~~~d~i~~lE~~l~~np~--------------d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~ 111 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPT--------------DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEF 111 (679)
T ss_dssp CCSCHHHHHHHHHHHCTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcC--------------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 455666677777777765 8999999999998888999999999999887 5677788999999888
Q ss_pred hcCC---hhHHHHHHccCCC-----CCcccHHHHHHHHHhCCCh--------HHHHHHHHHchh-CCC-CCC-hhhHHHH
Q 044169 164 KCGD---IKSMVAVVKQMPY-----LDIASCNCLLAGYAKNALF--------DQAFSFFLKLDG-IDV-QPN-HYTYSTM 224 (742)
Q Consensus 164 ~~g~---~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p~-~~t~~~l 224 (742)
+.|+ ++.+..+|++... +++..|..-+.-..+.++. +...++|+.... .|. .|+ ...|...
T Consensus 112 ~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Y 191 (679)
T 4e6h_A 112 DKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEY 191 (679)
T ss_dssp TC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred hhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 8888 9999999987542 6667788777655554443 334467776543 355 454 3456666
Q ss_pred HHHHcc---------CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC-------------ChHHHHHHHhcc---
Q 044169 225 LAICGS---------LSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCG-------------MMEDAESVFEGL--- 279 (742)
Q Consensus 225 l~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------------~~~~A~~~~~~~--- 279 (742)
+..... .++++.++.+|..++......-..+|......--..+ +++.|...+.++
T Consensus 192 i~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~ 271 (679)
T 4e6h_A 192 LHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNI 271 (679)
T ss_dssp HHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 654332 2346678888888774321111223322211110001 112222222211
Q ss_pred ----CC--CC--------------------cchHHHHHHHHHhCCC-cchHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 044169 280 ----VQ--RN--------------------VISWTAIINGFKQHGD-YEKPLRLVCLMREDGIDPNEYTFTVALASCASL 332 (742)
Q Consensus 280 ----~~--~~--------------------~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 332 (742)
.. |. ...|...+..--..+. .+..
T Consensus 272 ~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~----------------------------- 322 (679)
T 4e6h_A 272 TKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDD----------------------------- 322 (679)
T ss_dssp TTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHH-----------------------------
T ss_pred HHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccch-----------------------------
Confidence 00 00 0112222221111110 0000
Q ss_pred CChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH-HHHHhc--CCCCChhhHHHHHHHHHhCCCcHHHHHHH
Q 044169 333 RNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAK-KQLKEM--GKSASSVSWNAQIAGFFRNQKTEEAIEAF 409 (742)
Q Consensus 333 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 409 (742)
...+.+..+|+..+.. ++....+|...+..+...|+.++|. ++|++. .++.+...|-..+...-+.|++++|.++|
T Consensus 323 ~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iy 401 (679)
T 4e6h_A 323 LHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTI 401 (679)
T ss_dssp HHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 0011233444444443 2334555555555555555555554 555554 21334444555555556666666666666
Q ss_pred HHHhHcC---------CCCC------------hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 044169 410 SQMVRND---------AACD------------EFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNK 468 (742)
Q Consensus 410 ~~m~~~g---------~~p~------------~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 468 (742)
+++.... -.|+ ...|...+....+.|..+.|+.+|..+.+........+|...+.+-.+
T Consensus 402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH 481 (679)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 6655421 0121 224555555556666777777777776654101122333333333333
Q ss_pred cC-CHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHH
Q 044169 469 CG-SWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT--NSTFLAVLSACSHSGLVQDGQ 542 (742)
Q Consensus 469 ~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~ 542 (742)
.+ +.+.|.++|+... ..+...|...+.-....|+.+.|..+|++.+.....+. ...|...+..-...|+.+.+.
T Consensus 482 ~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 33 4677777777655 33455566666666666777777777777766422111 134666666666667777777
Q ss_pred HHHHHhHHh
Q 044169 543 KVFESMVKE 551 (742)
Q Consensus 543 ~~~~~m~~~ 551 (742)
++.+++.+.
T Consensus 562 ~v~~R~~~~ 570 (679)
T 4e6h_A 562 TLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-10 Score=117.95 Aligned_cols=235 Identities=10% Similarity=0.056 Sum_probs=145.9
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHhHc----CCCC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----CCCC-chh
Q 044169 388 SWNAQIAGFFRNQKTEEAIEAFSQMVRN----DAAC-DEFTYSSILKACSLLPSLATCEQIHSRIVKS----KFES-NVH 457 (742)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~~-~~~ 457 (742)
.|..+...|...|++++|.+.+++.... +..| ...++..+...+...|++++|...+....+. +..+ ...
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3444555555555555555555543321 1111 1234445555555566666666555554332 1000 123
Q ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHHhcCC-----C----CchHHHHHHHHHHHcCCHHHHHH
Q 044169 458 VGSSLIEAYNKCGS--------------------WEDAERVFSQLTA-----A----DVVSWNSMIKAYSQNGRARKAII 508 (742)
Q Consensus 458 ~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~ 508 (742)
++..+...|...|+ +++|.+.+++... . ....+..+...|...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55666667777777 7777777665431 1 12367777788888888888888
Q ss_pred HHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc----HHHHHHHHHHHhhcCCHHHHHH
Q 044169 509 LFEKMVVEGI-RPT----NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE----EAHYSCMVDLLGRAGKLEIALI 579 (742)
Q Consensus 509 ~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 579 (742)
.+++..+... .++ ..++..+...+...|++++|.+.+++..+...-.++ ...+..+..+|...|++++|.+
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888764310 111 136777778888899999999988887643211112 4467788889999999999998
Q ss_pred HHHhCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 580 FISNLP----IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 580 ~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
.+++.. ..++ ..++..+...+...|++++|...+++++++.++
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 887653 1112 446777888899999999999999999988663
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-10 Score=105.88 Aligned_cols=158 Identities=16% Similarity=0.093 Sum_probs=93.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcC
Q 044169 493 MIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAG 572 (742)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g 572 (742)
+...+...|++++|+..++++.+. .+.+...+..+...+...|++++|.+.++++.+. .+.+...+..++..+...|
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhc
Confidence 333344444444444444443332 1112233444444444444444444444444331 1223344455555555555
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 573 KLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 573 ~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
++++|.+.++++. .+.+...+..+...+...|++++|...++++++..|+++.++..++.+|...|++++|.+.++.+
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555432 23356667777777888888888888888888888888888888888888888888888888877
Q ss_pred HhC
Q 044169 651 KMK 653 (742)
Q Consensus 651 ~~~ 653 (742)
.+.
T Consensus 171 ~~~ 173 (186)
T 3as5_A 171 NEL 173 (186)
T ss_dssp HHH
T ss_pred HHc
Confidence 653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.25 E-value=5.2e-10 Score=113.38 Aligned_cols=213 Identities=6% Similarity=0.064 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHHhcCC---C-CchHHHHHHHHHHH
Q 044169 438 ATCEQIHSRIVKSKFESNVHVGSSLIEAYN-------KCGSW-------EDAERVFSQLTA---A-DVVSWNSMIKAYSQ 499 (742)
Q Consensus 438 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 499 (742)
++|..+|+.+.+.. +.+...|..++..+. +.|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67788888888763 566778888877775 35885 899999997653 3 45589999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-H-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHh-hcCCHHH
Q 044169 500 NGRARKAIILFEKMVVEGIRPTN-S-TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLG-RAGKLEI 576 (742)
Q Consensus 500 ~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~-~~g~~~~ 576 (742)
.|++++|..+|+++++ +.|+. . .|..+...+.+.|++++|..+|++..+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 46654 3 7888999999999999999999999752 2344555554444422 3799999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 577 ALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILEL---DPD-DAAVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 577 A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
|.++|++.. .+.+...|..++..+...|+.++|..+++++++. .|+ +...+..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998864 2346889999999999999999999999999996 553 6778999999999999999999999998
Q ss_pred HhCCC
Q 044169 651 KMKEI 655 (742)
Q Consensus 651 ~~~~~ 655 (742)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 86553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.5e-10 Score=116.62 Aligned_cols=226 Identities=9% Similarity=0.043 Sum_probs=110.0
Q ss_pred HHHHHhCCCcHHHHHHHHHHhHcCC-CCC----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--CC----CCchhHHHH
Q 044169 393 IAGFFRNQKTEEAIEAFSQMVRNDA-ACD----EFTYSSILKACSLLPSLATCEQIHSRIVKS--KF----ESNVHVGSS 461 (742)
Q Consensus 393 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~--~~----~~~~~~~~~ 461 (742)
...+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+....+. .. +....+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 3444555666666666655543200 011 234444444555555555555555444332 00 001234555
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-----CCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH-HHHHH
Q 044169 462 LIEAYNKCGSWEDAERVFSQLT-----AADV----VSWNSMIKAYSQNGRARKAIILFEKMVVE----GIRPTN-STFLA 527 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ 527 (742)
+..+|...|++++|.+.|++.. ..+. .++..+...|...|++++|+..+++..+. +..|+. .++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 5556666666666666555443 1111 24555666666666666666666665541 221322 44555
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcC---CCCcHHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYG---ILPEEAHYSCMVDLLGRAGK---LEIALIFISNLPIKPTAPIWRPLFAACR 601 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~---~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 601 (742)
+...+...|++++|.+.+++..+... -+.....+..+...|...|+ +++|+.++++....
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~-------------- 335 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY-------------- 335 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH--------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH--------------
Confidence 55666666666666666655543211 11111123344455555555 44555555444311
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 602 CHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
|.....+..++.+|...|++++|.+.+++..
T Consensus 336 -------------------~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 336 -------------------ADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp -------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2233455566666666666666666666554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-10 Score=121.14 Aligned_cols=231 Identities=8% Similarity=-0.042 Sum_probs=151.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C---CCC-HHHHH
Q 044169 462 LIEAYNKCGSWEDAERVFSQLTA-----AD----VVSWNSMIKAYSQNGRARKAIILFEKMVVEG--I---RPT-NSTFL 526 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~---~p~-~~t~~ 526 (742)
....+...|++++|...|++... ++ ..+|..+...|...|++++|+..+++..+.- . .|. ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556667777777777766542 22 2366777777777888888887777766421 1 111 24577
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhCC------CC-C-CHHHHH
Q 044169 527 AVLSACSHSGLVQDGQKVFESMVKEYGILPE----EAHYSCMVDLLGRAGKLEIALIFISNLP------IK-P-TAPIWR 594 (742)
Q Consensus 527 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~-p-~~~~~~ 594 (742)
.+...|...|++++|.+.+++..+...-.++ ..++..+..+|...|++++|++.+++.. .. | ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777888888888888888777643211122 2367778888888888888888877643 12 3 355677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCchhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCCcccEEEE
Q 044169 595 PLFAACRCHSDLKMAEFISKQILEL-----DPDDAAVYVTLSNMYAEAGL---QADAEEQRKLMKMKEISKEPGCSWIEV 666 (742)
Q Consensus 595 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~~l~~~y~~~g~---~~~A~~~~~~m~~~~~~~~~~~s~~~~ 666 (742)
.+...+...|++++|...+++++++ +|.....+..++.+|...|+ +++|..++++. +..+.....+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~--- 342 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA--- 342 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH---
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH---
Confidence 8888888999999999999988886 33333446778999999999 77777777655 2221111111
Q ss_pred cCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 044169 667 YNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIED 699 (742)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 699 (742)
..+...+...+.+.++.+.+.+..++.+++..
T Consensus 343 -~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 343 -IDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred -HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 11223345566778888889888888876654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-11 Score=123.76 Aligned_cols=239 Identities=11% Similarity=0.043 Sum_probs=146.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHhcCC----------CCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHc------C
Q 044169 353 GDFVGTAIVDMYSGLGEIWEAKKQLKEMGK----------SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN------D 416 (742)
Q Consensus 353 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 416 (742)
...++..+...|...|++++|...|++.-. ......+..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 467788899999999999999999988721 112456888999999999999999999998764 2
Q ss_pred C-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHh------CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCch
Q 044169 417 A-ACDEFTYSSILKACSLLPSLATCEQIHSRIVKS------KFES-NVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVV 488 (742)
Q Consensus 417 ~-~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 488 (742)
- .....++..+...+...|++++|...+..+.+. +..| ....+..+...|...|++++|.+.|+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~-------- 177 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ-------- 177 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH--------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH--------
Confidence 2 223567888899999999999999999987764 1112 23344455555555555555555554
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCC
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVE------GIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEY------GIL 555 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~ 555 (742)
++.+. +..|+. .++..+...+...|++++|.+.++++.+.. ...
T Consensus 178 -----------------------~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 178 -----------------------RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp -----------------------HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -----------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 43332 112221 234444555555555555555555554310 001
Q ss_pred C-------cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 556 P-------EEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 556 p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
+ ....+..+...+...+.+.+|...++... ..| +..++..+...|...|++++|...+++++++.|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 11122333344455556666666666654 233 4667888888999999999999999999988774
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-09 Score=105.60 Aligned_cols=204 Identities=9% Similarity=0.043 Sum_probs=139.2
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHH
Q 044169 419 CDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIK 495 (742)
Q Consensus 419 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 495 (742)
.|...+......+...|++++|...+....+..-+++...+..+..+|.+.|++++|.+.|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 34566777777788888888888888888776533566666667888888888888888888765 234457777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc---HHHHHHH
Q 044169 496 AYSQNGRARKAIILFEKMVVEGIRPT-N-------STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE---EAHYSCM 564 (742)
Q Consensus 496 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 564 (742)
.|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|++.|+++.+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 888888888888888888774 444 3 2366666677778888888888887753 3454 4566677
Q ss_pred HHHHhhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 565 VDLLGRAGKL--EIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 565 ~~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
..+|...|+. ++|..+. ..+...+.... ....+.+++|...++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7777665543 2222211 22333333332 33445678999999999999998888777776654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-09 Score=100.84 Aligned_cols=168 Identities=13% Similarity=-0.010 Sum_probs=143.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044169 456 VHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSAC 532 (742)
Q Consensus 456 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 532 (742)
...+..+...+...|++++|...|+++. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3556778888999999999999999887 3456788899999999999999999999998852 34567788888999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHH
Q 044169 533 SHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAE 610 (742)
Q Consensus 533 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~ 610 (742)
...|++++|.+.++++.+. .+.+...+..++.++...|++++|.+.+++.. .+.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999763 34567788899999999999999999998864 3446788999999999999999999
Q ss_pred HHHHHHHhcCCCCchh
Q 044169 611 FISKQILELDPDDAAV 626 (742)
Q Consensus 611 ~~~~~~~~~~p~~~~~ 626 (742)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998876543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-08 Score=106.54 Aligned_cols=258 Identities=11% Similarity=0.004 Sum_probs=164.3
Q ss_pred HHHhCCCcHHHHHHHHHHhHcCCCCChH----HHHHHHHHhcCCCCHHHHHHHHHHHHHh----CCCC-chhHHHHHHHH
Q 044169 395 GFFRNQKTEEAIEAFSQMVRNDAACDEF----TYSSILKACSLLPSLATCEQIHSRIVKS----KFES-NVHVGSSLIEA 465 (742)
Q Consensus 395 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~~-~~~~~~~li~~ 465 (742)
.+...|++++|...+++........+.. ++..+...+...|+++.|...+....+. +... ....+..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4445566666666666555432111111 2334444555566666666666555432 1000 12234556677
Q ss_pred HHhcCCHHHHHHHHHhcC-------C---C-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHHHH
Q 044169 466 YNKCGSWEDAERVFSQLT-------A---A-DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIR--P--TNSTFLAVLS 530 (742)
Q Consensus 466 ~~~~g~~~~A~~~~~~~~-------~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll~ 530 (742)
|...|++++|...+++.. . + ....+..+...+...|++++|...+++.....-. + ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 777888888877777654 1 1 1235566777888889999999888887764221 1 1245777777
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcHHHHH-----HHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEEAHYS-----CMVDLLGRAGKLEIALIFISNLP-IKPT-----APIWRPLFAA 599 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~ 599 (742)
.+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 88889999999999988765322111111111 23455778999999999998865 1221 2346677778
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC-----C-chhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 600 CRCHSDLKMAEFISKQILELDPD-----D-AAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 600 ~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
+...|++++|...++++++..+. + ...+..++.+|...|++++|...++....
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88999999999999998875332 1 23677889999999999999999888764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.3e-10 Score=105.99 Aligned_cols=189 Identities=10% Similarity=-0.038 Sum_probs=115.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---C-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLT---A-ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVL 529 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 529 (742)
++..+......|.+.|++++|...|++.. + ++...|..+..++...|++++|+..+++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 44566666677777777777777777654 2 5555666666777777777777777777766 34544 4566666
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCcH-------HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC---HHHHHHHHH
Q 044169 530 SACSHSGLVQDGQKVFESMVKEYGILPEE-------AHYSCMVDLLGRAGKLEIALIFISNLP-IKPT---APIWRPLFA 598 (742)
Q Consensus 530 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~ 598 (742)
.++...|++++|.+.+++..+.. +.+. ..|..+...+...|++++|++.|++.. ..|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 67777777777777777766532 1222 345666666666777777777766643 3444 344555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 599 ACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
.+.. .+...++++..+.+.++..|..+ .....|.+++|...+++..+..
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 5533 33444556666655454444332 2344556699999998887643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.1e-10 Score=120.66 Aligned_cols=179 Identities=11% Similarity=0.016 Sum_probs=156.5
Q ss_pred CHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 044169 471 SWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRA-RKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVF 545 (742)
Q Consensus 471 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 545 (742)
.++++...+++.. ..+...|..+...|...|++ ++|+..|++..+. .|+ ...|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556666666554 34667899999999999999 9999999999985 555 578999999999999999999999
Q ss_pred HHhHHhcCCCCcHHHHHHHHHHHhhc---------CCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHc--------CCH
Q 044169 546 ESMVKEYGILPEEAHYSCMVDLLGRA---------GKLEIALIFISNLP-I-KPTAPIWRPLFAACRCH--------SDL 606 (742)
Q Consensus 546 ~~m~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~--------g~~ 606 (742)
++..+ ..|+...+..+..+|... |++++|++.+++.. . +.+...|..+..++... |++
T Consensus 161 ~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99964 458888899999999999 99999999999864 3 34688999999999988 999
Q ss_pred HHHHHHHHHHHhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 607 KMAEFISKQILELDP---DDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 607 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
++|+..++++++++| +++.++..++.+|...|++++|.+.+++..+..
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999 999999999999999999999999999987644
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-09 Score=113.08 Aligned_cols=220 Identities=13% Similarity=-0.030 Sum_probs=132.6
Q ss_pred hcCCCCHHHHHHHHHHHHHhC--CCC---chhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCC-----chHHHHHHH
Q 044169 431 CSLLPSLATCEQIHSRIVKSK--FES---NVHVGSSLIEAYNKCGSWEDAERVFSQLT-----AAD-----VVSWNSMIK 495 (742)
Q Consensus 431 ~~~~g~~~~a~~i~~~~~~~~--~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~-----~~~~~~li~ 495 (742)
+...|++++|...+..+.+.. ... ...++..+...|...|++++|...+.+.. .++ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 345566666666666554321 011 13455566666777777766666665543 111 235666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCcHHHHHHHHHH
Q 044169 496 AYSQNGRARKAIILFEKMVVE----GIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEY---GILPEEAHYSCMVDL 567 (742)
Q Consensus 496 ~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~l~~~ 567 (742)
.|...|++++|+..|++..+. |-.+. ..++..+...+...|++++|.+.+++..+.. +.+....++..+..+
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 777777777777777776542 11111 1356667777777888888888777765411 222234566777778
Q ss_pred HhhcCCHHHHHHHHHhCC------CCCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 044169 568 LGRAGKLEIALIFISNLP------IKPT-APIWRPLFAACRCHSD---LKMAEFISKQILELDPDDAAVYVTLSNMYAEA 637 (742)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~------~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 637 (742)
|.+.|++++|.+.+++.. ..|. ...+..+...+...++ .++|...+++. ...|.....+..++..|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 888888888887776542 1222 2334444445666666 55566555551 12233455677888888889
Q ss_pred CCHHHHHHHHHHHH
Q 044169 638 GLQADAEEQRKLMK 651 (742)
Q Consensus 638 g~~~~A~~~~~~m~ 651 (742)
|++++|.+.+++..
T Consensus 350 g~~~~A~~~~~~al 363 (378)
T 3q15_A 350 CHFEQAAAFYRKVL 363 (378)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99888888887765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.8e-08 Score=102.78 Aligned_cols=228 Identities=10% Similarity=0.068 Sum_probs=167.0
Q ss_pred HHHHHHhCCCcHHHHHHHHHHhHcCC-CCC----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--CC---CC-chhHHH
Q 044169 392 QIAGFFRNQKTEEAIEAFSQMVRNDA-ACD----EFTYSSILKACSLLPSLATCEQIHSRIVKS--KF---ES-NVHVGS 460 (742)
Q Consensus 392 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~--~~---~~-~~~~~~ 460 (742)
....+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+....+. .. .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44456678888888888887765311 122 346667777788888888888888776543 11 11 245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHH
Q 044169 461 SLIEAYNKCGSWEDAERVFSQLTA-----AD----VVSWNSMIKAYSQNGRARKAIILFEKMVVE----GIRPTNSTFLA 527 (742)
Q Consensus 461 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ 527 (742)
.+..+|...|++++|.+.|++... .+ ..+++.+...|...|++++|+..+++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 888889999999999988877651 22 236778888999999999999999988761 22222467888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCC---CCcHHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGI---LPEEAHYSCMVDLLGRAGK---LEIALIFISNLPIKPT-APIWRPLFAAC 600 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~---~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~ 600 (742)
+...+.+.|++++|...+++..+...- +.....+..+...|...|+ +++|+..+++....|+ ...+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 889999999999999999998764322 2223456777788888888 9999999998654343 34566778889
Q ss_pred HHcCCHHHHHHHHHHHHhc
Q 044169 601 RCHSDLKMAEFISKQILEL 619 (742)
Q Consensus 601 ~~~g~~~~a~~~~~~~~~~ 619 (742)
...|++++|...++++++.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999998775
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.6e-09 Score=101.88 Aligned_cols=206 Identities=12% Similarity=0.041 Sum_probs=134.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-C---chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC-HHHHH
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLT--AA-D---VVSWNSMIKAYSQNGRARKAIILFEKMVVEGI-RPT-NSTFL 526 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 526 (742)
+...+..+...+.+.|++++|...|+++. .| + ...+..+..+|.+.|++++|+..|++..+..- .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 45556666677777777777777777765 22 2 34666677777777777777777777776411 112 23455
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044169 527 AVLSACSH--------SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFA 598 (742)
Q Consensus 527 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 598 (742)
.+..++.. .|++++|+..|+++.+...-.+ .....+.......+++ ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE--LVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT--THHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch--hHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 55666666 7777777777777765322111 1111111111000000 112456777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCCcccEEE
Q 044169 599 ACRCHSDLKMAEFISKQILELDPDD---AAVYVTLSNMYAEA----------GLQADAEEQRKLMKMKEISKEPGCSWIE 665 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~----------g~~~~A~~~~~~m~~~~~~~~~~~s~~~ 665 (742)
.+...|++++|+..++++++..|++ +..+..++.+|... |++++|...++++.+...
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---------- 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---------- 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----------
Confidence 8999999999999999999999974 45889999999977 999999999999886442
Q ss_pred EcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHc
Q 044169 666 VYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDI 700 (742)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~ 700 (742)
.++.+.+....+.++...+.+.
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHHh
Confidence 3555666666677776666543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-09 Score=108.75 Aligned_cols=196 Identities=13% Similarity=0.171 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----CchHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCC
Q 044169 457 HVGSSLIEAYNKCGSWEDAERVFSQLTA-------A----DVVSWNSMIKAYSQNGRARKAIILFEKMVVE------GIR 519 (742)
Q Consensus 457 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 519 (742)
.++..+...|...|++++|...|++... + ...+|..+...|...|++++|+..+++..+. .-.
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3444444445555555555544444320 1 1224555555566666666666666555542 111
Q ss_pred CC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhCC-------
Q 044169 520 PT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEY-----GILP-EEAHYSCMVDLLGRAGKLEIALIFISNLP------- 585 (742)
Q Consensus 520 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------- 585 (742)
|+ ..++..+...+...|++++|.++++++.+.. +..| ....+..+..+|.+.|++++|.+.+++..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 22 2445566666666667776666666665420 1122 23456666667777777777766665432
Q ss_pred ---CCC-CHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 586 ---IKP-TAPIWRPLFAACRCHSD------LKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 586 ---~~p-~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
..+ ....|..+.......+. +..+...++......|..+.++..++.+|...|++++|.+++++..+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 12223333322222221 23333333333333455667888899999999999999999887764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.3e-07 Score=96.54 Aligned_cols=155 Identities=10% Similarity=0.047 Sum_probs=67.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc-------CCC--C-ChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCC----ChHHH
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEM-------GKS--A-SSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAAC----DEFTY 424 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~-------~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~ 424 (742)
.+...+...|++++|...+++. +.. | ....+..+...+...|++++|...+++........ ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 3444555555555555555443 100 1 12234445555566666666666666554422111 11234
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhCCCCc--hhHHH----HHHHHHHhcCCHHHHHHHHHhcCCCCc-------hHHH
Q 044169 425 SSILKACSLLPSLATCEQIHSRIVKSKFESN--VHVGS----SLIEAYNKCGSWEDAERVFSQLTAADV-------VSWN 491 (742)
Q Consensus 425 ~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~ 491 (742)
..+...+...|++++|...++......-.++ ..... ..+..+...|++++|...+++...++. ..+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 4444445555555555555554443211110 00000 122234455555555555555442211 1233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 044169 492 SMIKAYSQNGRARKAIILFEKM 513 (742)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~m 513 (742)
.+...+...|++++|...+++.
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 4444445555555555555444
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.5e-09 Score=118.81 Aligned_cols=163 Identities=12% Similarity=0.149 Sum_probs=133.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 044169 455 NVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLS 530 (742)
Q Consensus 455 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 530 (742)
+...++.|..+|.+.|++++|++.|++.. ..+..+|+.+..+|.+.|++++|+..|++.++. .|+. ..|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 46778888888888999999998888775 345678888999999999999999999998874 6664 67888888
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKM 608 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~ 608 (742)
++...|++++|++.|++..+. -+-+...|..+..+|.+.|++++|++.|++.. ..| +...|..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999988763 22346688889999999999999999998754 445 57788899999999999999
Q ss_pred HHHHHHHHHhcCC
Q 044169 609 AEFISKQILELDP 621 (742)
Q Consensus 609 a~~~~~~~~~~~p 621 (742)
|.+.+++++++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 9999998887644
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.5e-08 Score=98.15 Aligned_cols=202 Identities=11% Similarity=0.021 Sum_probs=145.2
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-C---chH
Q 044169 419 CDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESN---VHVGSSLIEAYNKCGSWEDAERVFSQLT--AA-D---VVS 489 (742)
Q Consensus 419 p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~---~~~ 489 (742)
.+...+......+...|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|++.. .| + ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345677777888899999999999999998864 223 6778889999999999999999999886 23 2 346
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHH
Q 044169 490 WNSMIKAYSQ--------NGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAH 560 (742)
Q Consensus 490 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 560 (742)
+..+..++.. .|++++|+..|++.++. .|+. .....+ ..+...... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 99999999999999985 4553 222111 111111110 0122
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCch
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP-IKPT----APIWRPLFAACRCH----------SDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
+..+..+|.+.|++++|+..|+++. ..|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 5567788889999999998888753 2233 44666777777755 8899999999999999998764
Q ss_pred ---hHHHHHHHHHhcCCHHH
Q 044169 626 ---VYVTLSNMYAEAGLQAD 642 (742)
Q Consensus 626 ---~~~~l~~~y~~~g~~~~ 642 (742)
+...+..++...|++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 44455555555555443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.1e-08 Score=86.77 Aligned_cols=123 Identities=18% Similarity=0.152 Sum_probs=71.9
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCH
Q 044169 529 LSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDL 606 (742)
Q Consensus 529 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~ 606 (742)
...+...|++++|..+++++.+. .+.+...+..++..+...|++++|.+.++++. .+.+...+..+...+...|++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 33333444444444444444321 11223334444444444455555544444432 123455666666677777777
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 607 KMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 607 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
++|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777777777777888888888888888888888777643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.94 E-value=7.9e-08 Score=94.47 Aligned_cols=244 Identities=9% Similarity=0.012 Sum_probs=159.0
Q ss_pred HHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHH
Q 044169 363 MYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQ 442 (742)
Q Consensus 363 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 442 (742)
-..-.|.+..++.-..++........-.-+.++|...|++... ..-.|....+..+..-+ ..+ +..
T Consensus 22 n~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~ 87 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIE 87 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCH
T ss_pred HHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHH
Confidence 3445678877777555553122222333345777777777632 11234433444443333 222 556
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 044169 443 IHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA-----ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEG 517 (742)
Q Consensus 443 i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 517 (742)
.++...+.+ +++......+..+|...|++++|.+++.+... .+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 88 ~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~-- 164 (310)
T 3mv2_B 88 ELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN-- 164 (310)
T ss_dssp HHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 666665554 44555556788888899999999999988742 2445777788899999999999999999987
Q ss_pred CCC-----CHHHHHHHHHH--HhccC--cHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCC--
Q 044169 518 IRP-----TNSTFLAVLSA--CSHSG--LVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPI-- 586 (742)
Q Consensus 518 ~~p-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 586 (742)
..| +..+...+..+ ....| ++++|..+|+++... .|+......+..++.+.|++++|.+.++.+..
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 467 35555666655 33334 899999999998543 35433333444488899999999988875431
Q ss_pred ---------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 044169 587 ---------KP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYV 628 (742)
Q Consensus 587 ---------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 628 (742)
.| |+.+...++......|+ .|.+.++++.+..|+++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 14 45566566666666676 888999999999998876443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=7e-09 Score=104.01 Aligned_cols=200 Identities=11% Similarity=0.011 Sum_probs=143.2
Q ss_pred CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHHcCCHHHH
Q 044169 436 SLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTA-----AD----VVSWNSMIKAYSQNGRARKA 506 (742)
Q Consensus 436 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 506 (742)
++++|...+... ...|...|++++|...|.+... .+ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776665 3467788898888888876641 11 35788899999999999999
Q ss_pred HHHHHHHHHcCC---CCC--HHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCc----HHHHHHHHHHHhhcCCHHH
Q 044169 507 IILFEKMVVEGI---RPT--NSTFLAVLSACSHS-GLVQDGQKVFESMVKEYGILPE----EAHYSCMVDLLGRAGKLEI 576 (742)
Q Consensus 507 ~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 576 (742)
+..+++..+... .+. ..++..+...|... |++++|+..|++..+...-..+ ..++..+..+|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999988875311 111 24688888899986 9999999999998753211111 3468889999999999999
Q ss_pred HHHHHHhCC-CCCC---H-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-----hHHHHHHHHH--hcCCH
Q 044169 577 ALIFISNLP-IKPT---A-----PIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA-----VYVTLSNMYA--EAGLQ 640 (742)
Q Consensus 577 A~~~~~~~~-~~p~---~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~y~--~~g~~ 640 (742)
|++.|++.. ..|+ . ..|..+..++...|++++|...++++++++|+... .+..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999998753 2222 1 15677777889999999999999999999997544 2445666665 45778
Q ss_pred HHHHHHHHHH
Q 044169 641 ADAEEQRKLM 650 (742)
Q Consensus 641 ~~A~~~~~~m 650 (742)
++|.+.++.+
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 8888888554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.1e-08 Score=100.56 Aligned_cols=166 Identities=11% Similarity=-0.016 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCC------
Q 044169 458 VGSSLIEAYNKCGSWEDAERVFSQLTA-----AD----VVSWNSMIKAYSQN-GRARKAIILFEKMVVEGIRPT------ 521 (742)
Q Consensus 458 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~------ 521 (742)
+++.+..+|.+.|++++|...|++... .+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 444444555555555555554444331 11 23566777778875 8888888888877653 221
Q ss_pred -HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH-----HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHH---
Q 044169 522 -NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEE-----AHYSCMVDLLGRAGKLEIALIFISNLP-IKPTAP--- 591 (742)
Q Consensus 522 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~--- 591 (742)
..++..+...+...|++++|+..|++..+...-.+.. ..|..+..++...|++++|+..+++.. ..|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 2457777788888888888888888886532211221 256677788888888888888888754 344321
Q ss_pred ---HHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCch
Q 044169 592 ---IWRPLFAACR--CHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 592 ---~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
.+..++.++. ..+++++|...++++++++|....
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 2344455554 345688888888888777774433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.91 E-value=6.4e-08 Score=92.74 Aligned_cols=180 Identities=15% Similarity=0.100 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----HH
Q 044169 456 VHVGSSLIEAYNKCGSWEDAERVFSQLT--AAD----VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS----TF 525 (742)
Q Consensus 456 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~ 525 (742)
...+..+...+.+.|++++|...|+++. .|+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 3445556667778888888888888776 232 236677778888888888888888888764 34431 33
Q ss_pred HHHHHHHhc------------------cCcHHHHHHHHHHhHHhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 044169 526 LAVLSACSH------------------SGLVQDGQKVFESMVKEYGILPEE-AHYSCMVDLLGRAGKLEIALIFISNLPI 586 (742)
Q Consensus 526 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (742)
..+..++.. .|++++|...|+++++.+ |+. ..+..... .+......
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~----l~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKR----LVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHH----HHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHH----HHHHHHHH--------
Confidence 334444433 345566666666554421 221 11111100 00000000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 587 KPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDA---AVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 587 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
......+...+.+.|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113455668899999999999999999999876 5799999999999999999999999887664
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-07 Score=91.53 Aligned_cols=240 Identities=9% Similarity=0.033 Sum_probs=165.9
Q ss_pred HHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 044169 394 AGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWE 473 (742)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 473 (742)
+-..-.|.+..++.-...+.. ........-+.+++...|+.... ..-.|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 445557888888774333211 11223333344666666654421 111233334433333 33333
Q ss_pred HHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 044169 474 DAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMV 549 (742)
Q Consensus 474 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 549 (742)
|...|++.. .++..++..+..++...|++++|++++.+.+..|-.++. ..+...+..+.+.|+.+.|.+.++.|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677787765 345566678888999999999999999998775432344 568888899999999999999999996
Q ss_pred HhcCCCC-----cHHHHHHHHHH--HhhcC--CHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044169 550 KEYGILP-----EEAHYSCMVDL--LGRAG--KLEIALIFISNLP-IKPTAPIWRPLFAACRCHSDLKMAEFISKQILEL 619 (742)
Q Consensus 550 ~~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 619 (742)
+ ..| +..+...|+.+ ....| ++++|..+|+++. ..|+..+-..++.++.+.|++++|++.++.+.+.
T Consensus 164 ~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 N---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred h---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 346 34555666655 33334 9999999999975 3455334445555899999999999999988876
Q ss_pred ----------CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 620 ----------DPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 620 ----------~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
+|+|+.++..++.++...|+ +|.++++++.+...
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 58899999899888888997 89999999987553
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-09 Score=95.67 Aligned_cols=139 Identities=8% Similarity=-0.050 Sum_probs=89.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHH
Q 044169 497 YSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLE 575 (742)
Q Consensus 497 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 575 (742)
+...|++++|+..+++... ..|+. ..+..+...|.+.|++++|++.|++.++. -+-+...|..+..+|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 3344556666666665543 23332 23445556666666666666666666542 1234556666667777777777
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 044169 576 IALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEF-ISKQILELDPDDAAVYVTLSNMYAEAGL 639 (742)
Q Consensus 576 ~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 639 (742)
+|+..|++.. ..| +..+|..+...+.+.|+++++.+ .++++++++|+++.+|.....++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777766543 344 46777777778888887766554 4588888888888888888888877774
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.7e-08 Score=98.74 Aligned_cols=197 Identities=12% Similarity=0.085 Sum_probs=109.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHh------CCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C---
Q 044169 423 TYSSILKACSLLPSLATCEQIHSRIVKS------KFE-SNVHVGSSLIEAYNKCGSWEDAERVFSQLTA-------A--- 485 (742)
Q Consensus 423 t~~~ll~~~~~~g~~~~a~~i~~~~~~~------~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--- 485 (742)
++..+...+...|++++|...+..+.+. +-. ....++..+..+|...|++++|.+.|++... +
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444455555555444444332 111 1234555566666666666666666655431 1
Q ss_pred -CchHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----
Q 044169 486 -DVVSWNSMIKAYSQNGRARKAIILFEKMVVE------GIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEY----- 552 (742)
Q Consensus 486 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----- 552 (742)
...+|..+...|...|++++|+..++++.+. +-.|+. .++..+...+...|++++|.++++++.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 1335666777777777777777777777653 113332 457777778888888888888888776521
Q ss_pred -CCCCc-HHHHHHHHHHHhhc------CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 044169 553 -GILPE-EAHYSCMVDLLGRA------GKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILEL 619 (742)
Q Consensus 553 -~~~p~-~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 619 (742)
...+. ...+..+...+... ..+.++...++... ..| ...++..+...+...|++++|...++++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11121 22333333333332 23455555555554 223 3556778888899999999999999998875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.88 E-value=6.2e-08 Score=83.69 Aligned_cols=131 Identities=17% Similarity=0.216 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLL 568 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 568 (742)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+..++.++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677777888888888888888887652 334566777777788888888888888887653 234556777788888
Q ss_pred hhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 569 GRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 569 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
...|++++|.+.++++. .+.+...+..+...+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88888888888887753 2345777888888888999999999999999888874
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.2e-07 Score=88.00 Aligned_cols=172 Identities=12% Similarity=0.041 Sum_probs=135.4
Q ss_pred HHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhH
Q 044169 475 AERVFSQLT-AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSG----LVQDGQKVFESMV 549 (742)
Q Consensus 475 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 549 (742)
|.+.|++.. ..++.++..|...|...+++++|+..|++..+.| +...+..+...|.. + ++++|.+.|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444433 3466677778888888889999999999888764 45666677777777 6 8999999999886
Q ss_pred HhcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 044169 550 KEYGILPEEAHYSCMVDLLGR----AGKLEIALIFISNLPIKPT----APIWRPLFAACRC----HSDLKMAEFISKQIL 617 (742)
Q Consensus 550 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 617 (742)
+. -+...+..|..+|.. .+++++|++.|++.....+ +..+..|...|.. .++.++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 52 356677788888877 8899999999998653333 7888888888888 889999999999999
Q ss_pred hcCCCCchhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCCC
Q 044169 618 ELDPDDAAVYVTLSNMYAEA-G-----LQADAEEQRKLMKMKEI 655 (742)
Q Consensus 618 ~~~p~~~~~~~~l~~~y~~~-g-----~~~~A~~~~~~m~~~~~ 655 (742)
++ |.++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 55788999999999875 3 89999999999887663
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-08 Score=114.95 Aligned_cols=190 Identities=12% Similarity=0.030 Sum_probs=119.0
Q ss_pred cCCCCHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHc
Q 044169 432 SLLPSLATCEQIHSRIV--------KSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQN 500 (742)
Q Consensus 432 ~~~g~~~~a~~i~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 500 (742)
...|++++|.+.++.+. +.. +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66777778877777776 321 3445666677777777777777777777665 34556777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 044169 501 GRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALI 579 (742)
Q Consensus 501 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 579 (742)
|++++|+..|++..+. .|+. ..+..+..++...|++++ ++.|+++.+. -+.+...|..+..+|.+.|++++|++
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777763 4543 566667777777777777 7777776552 22345566777777777777777777
Q ss_pred HHHhCC-CCCC-HHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCCCchhH
Q 044169 580 FISNLP-IKPT-APIWRPLFAACRCHSD-----LKMAEFISKQILELDPDDAAVY 627 (742)
Q Consensus 580 ~~~~~~-~~p~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~ 627 (742)
.|++.. ..|+ ...|..+..++...++ .+...++.+.+.++.++++...
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 777654 4454 4455555555544443 3444444444555555555433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=9e-08 Score=95.52 Aligned_cols=174 Identities=10% Similarity=-0.051 Sum_probs=133.5
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 044169 473 EDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKE 551 (742)
Q Consensus 473 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 551 (742)
+...+.+....+.+...+..+...+.+.|++++|...|++..+. .|+. ..+..+...+...|++++|...++++..
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~- 179 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL- 179 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-
Confidence 33444444444445556677778888889999999999888874 5544 6777788888889999999999888754
Q ss_pred cCCCCcHHHHHH-HHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chh
Q 044169 552 YGILPEEAHYSC-MVDLLGRAGKLEIALIFISNLP-I-KPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD--AAV 626 (742)
Q Consensus 552 ~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 626 (742)
..|+...... ....+.+.|+.++|++.+++.. . +.+...+..+...+...|++++|...++++++.+|++ ...
T Consensus 180 --~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 --QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp --GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred --hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 2355443332 2334667778888888887653 3 3468889999999999999999999999999999987 889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 627 YVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 627 ~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
+..++.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999998887654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.78 E-value=9.8e-06 Score=87.05 Aligned_cols=366 Identities=9% Similarity=-0.038 Sum_probs=198.8
Q ss_pred hHHHHHHHHHchhCCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC-hHHHHHHHh
Q 044169 199 FDQAFSFFLKLDGIDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGM-MEDAESVFE 277 (742)
Q Consensus 199 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~ 277 (742)
++.|..+|+.+... -|. ++.+.+.++|+..+.. .|+...|...+....+.++ .+....+|+
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 66666666666542 222 7788888888887764 4677777777776666553 344455555
Q ss_pred ccCC------CCcchHHHHHHHHH----hCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 044169 278 GLVQ------RNVISWTAIINGFK----QHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIK 347 (742)
Q Consensus 278 ~~~~------~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 347 (742)
.... .+...|...+..+. .+++.+.+..+|++........-...|.... .+....+...+..+...
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~-~fE~~~~~~~~~~~~~~--- 148 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFE-NFELELNKITGKKIVGD--- 148 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHH-HHHHHHCHHHHHHHHHH---
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHH-HHHHHhccccHHHHHHH---
Confidence 4321 24456666665543 2345666777777776531110111111111 11111111112211111
Q ss_pred hCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc----CCCCChhhHHHHHHHHHhCC--C-----cHHHHHHHHHHhHcC
Q 044169 348 RGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM----GKSASSVSWNAQIAGFFRNQ--K-----TEEAIEAFSQMVRND 416 (742)
Q Consensus 348 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g 416 (742)
+. +.+..|..+++.. + ..+...|...+.--...+ - .+.+..+|+++....
T Consensus 149 ----------------~~--~~y~~ar~~y~~~~~~~~-~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~ 209 (493)
T 2uy1_A 149 ----------------TL--PIFQSSFQRYQQIQPLIR-GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF 209 (493)
T ss_dssp ----------------HH--HHHHHHHHHHHHHHHHHH-TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------Hh--HHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC
Confidence 10 1222233333222 1 123345655444322221 1 234567777777643
Q ss_pred CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHHhcC------------
Q 044169 417 AACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDA-ERVFSQLT------------ 483 (742)
Q Consensus 417 ~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~------------ 483 (742)
+-+...|...+.-+...|+.+.|..+++...+. +.+...+.. |+...+.++. ..+.+...
T Consensus 210 -p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 210 -YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcc
Confidence 344666766677777788888888888888877 334333322 2222111111 11111110
Q ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhcCCCCcHHHHH
Q 044169 484 AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSH-SGLVQDGQKVFESMVKEYGILPEEAHYS 562 (742)
Q Consensus 484 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 562 (742)
......|...+..+.+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+.++ .+...+.
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~ 358 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHH
Confidence 001235666666666777888899999888 32 12233444322222112 2368889999988877543 2344566
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044169 563 CMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILE 618 (742)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 618 (742)
..++...+.|+.+.|..+|+++. .....|...+..-..+|+.+.+..++++..+
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67888888888888998888874 3567788888877788888888888887765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-07 Score=88.51 Aligned_cols=133 Identities=14% Similarity=0.091 Sum_probs=98.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc
Q 044169 493 MIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA 571 (742)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 571 (742)
+..+|.+.|++++|+..|++.++. .|+ ...+..+..++...|++++|++.|++..+. -+.+...+..+..+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 888899999999999999999884 554 467888889999999999999999998763 234566788888888766
Q ss_pred CC--HHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 044169 572 GK--LEIALIFISNLPIKPTAP--IWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLS 631 (742)
Q Consensus 572 g~--~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 631 (742)
|+ .+.+...++... .|++. .+..+..++...|++++|+..++++++++|+ ......+.
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~l~ 197 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 54 445666676654 44443 3444555677789999999999999999994 43333333
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=8.8e-08 Score=106.05 Aligned_cols=159 Identities=11% Similarity=0.029 Sum_probs=124.0
Q ss_pred cCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 044169 469 CGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 469 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 544 (742)
.|++++|.+.|++.. ..+...|..+...|.+.|++++|++.+++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999876 335678999999999999999999999999984 555 57788899999999999999999
Q ss_pred HHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhc
Q 044169 545 FESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IK-PTAPIWRPLFAACRCH---SDLKMAEFISKQILEL 619 (742)
Q Consensus 545 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 619 (742)
+++..+. .+.+...+..+..+|.+.|++++|++.+++.. .. .+...+..+...+... |+.++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999763 23456788999999999999999999998864 33 4678888999999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 044169 620 DPDDAAVYVTLS 631 (742)
Q Consensus 620 ~p~~~~~~~~l~ 631 (742)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888887776
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=90.77 Aligned_cols=122 Identities=10% Similarity=0.047 Sum_probs=100.9
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcC
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPEE-AHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHS 604 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g 604 (742)
|...+...|++++|++.++... ...|+. ..+..+..+|.+.|++++|++.|++.. ..| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4456677889999999998774 334443 346678999999999999999999864 444 6889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHH-HHHHHh
Q 044169 605 DLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQ-RKLMKM 652 (742)
Q Consensus 605 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~-~~~m~~ 652 (742)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 576665
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.75 E-value=7.3e-08 Score=85.26 Aligned_cols=102 Identities=14% Similarity=0.040 Sum_probs=88.9
Q ss_pred CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 044169 553 GILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVT 629 (742)
Q Consensus 553 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 629 (742)
.+.|+ ...+..+...+.+.|++++|+..|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34443 4467788888999999999999998864 344 68899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 630 LSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 630 l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
++.+|...|++++|.+.|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988644
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=4e-08 Score=87.03 Aligned_cols=98 Identities=13% Similarity=-0.027 Sum_probs=85.9
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 557 EEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
+...+..+...+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..++++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34567778888999999999999998764 3447888999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 044169 635 AEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 635 ~~~g~~~~A~~~~~~m~~~~ 654 (742)
...|++++|.+.+++..+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999887543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.5e-07 Score=104.32 Aligned_cols=167 Identities=11% Similarity=-0.060 Sum_probs=93.2
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 044169 467 NKCGSWEDAERVFSQLT-----------AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSH 534 (742)
Q Consensus 467 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 534 (742)
...|++++|.+.|++.. ..+...|..+..+|.+.|++++|+..|+++.+. .|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 44566666666665543 233445555666666666666666666666553 333 3455555556666
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 044169 535 SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFI 612 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 612 (742)
.|++++|++.|++..+. -+.+...+..+..+|.+.|++++ ++.|++.. ..| +...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666665542 12234455566666666666666 65555542 222 455566666666666666666666
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 613 SKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 613 ~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
++++++++|++..++..++.+|...|
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHhhcccCcccHHHHHHHHHHHHccC
Confidence 66666666666666666666654433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-07 Score=81.30 Aligned_cols=107 Identities=13% Similarity=0.021 Sum_probs=58.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHH
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-I-KPTAPIWRPLFAACR 601 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~ 601 (742)
.+......+.+.|++++|++.|++.++. -+.+...|..+..+|.+.|++++|++.+++.. . +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444455555555555555555555442 12234455555555555555555555555432 2 224555666666666
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044169 602 CHSDLKMAEFISKQILELDPDDAAVYVTLSN 632 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 632 (742)
..|++++|...++++++++|+++.++..|..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 6666666666666666666666655555544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.9e-07 Score=92.90 Aligned_cols=220 Identities=12% Similarity=0.041 Sum_probs=145.1
Q ss_pred CCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044169 399 NQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERV 478 (742)
Q Consensus 399 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 478 (742)
.|++++|.+++++..+... .. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 3556677777766554311 10 0 11145666666666543 3456677777777777
Q ss_pred HHhcCC-----CC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhccCcHHHHHHH
Q 044169 479 FSQLTA-----AD----VVSWNSMIKAYSQNGRARKAIILFEKMVVEGI---RPT--NSTFLAVLSACSHSGLVQDGQKV 544 (742)
Q Consensus 479 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~ 544 (742)
|.+... .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|++.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 765541 11 23677788888889999999999888765310 122 2467778888888 999999999
Q ss_pred HHHhHHhcCCCC----cHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 044169 545 FESMVKEYGILP----EEAHYSCMVDLLGRAGKLEIALIFISNLP----IKPT----APIWRPLFAACRCHSDLKMAEFI 612 (742)
Q Consensus 545 ~~~m~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~ 612 (742)
|++..+...-.. ...++..+..+|.+.|++++|++.|++.. ..++ ...+..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998865321111 13567888999999999999999988754 1122 22556666677788999999999
Q ss_pred HHHHHhcCCCCch-----hHHHHHHHHHhcCCHHHHHHH
Q 044169 613 SKQILELDPDDAA-----VYVTLSNMYAEAGLQADAEEQ 646 (742)
Q Consensus 613 ~~~~~~~~p~~~~-----~~~~l~~~y~~~g~~~~A~~~ 646 (742)
+++++ +.|.... ....++.+| ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 8886433 244555555 56777666553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-07 Score=86.53 Aligned_cols=75 Identities=12% Similarity=0.018 Sum_probs=60.9
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 577 ALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD--AAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 577 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
|++.+++.. ..| +...+..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 455555432 234 57888888889999999999999999999999864 5689999999999999999999888765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.9e-07 Score=88.09 Aligned_cols=158 Identities=8% Similarity=-0.015 Sum_probs=117.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHH----------------HHHHHhccCcHHHHHHHHHHhHHhcCC
Q 044169 492 SMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLA----------------VLSACSHSGLVQDGQKVFESMVKEYGI 554 (742)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~~~~ 554 (742)
.....+...|++++|+..|++..+. .|+. ..+.. +..++...|++++|+..|++..+. -
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 84 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--A 84 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C
Confidence 3445566778888888888877763 5554 34555 788899999999999999999763 2
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCchhHHHH
Q 044169 555 LPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSD--LKMAEFISKQILELDPDDAAVYVTL 630 (742)
Q Consensus 555 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l 630 (742)
+.+...+..+..+|...|++++|++.|++.. ..| +..+|..+...+...|+ .+.+...++++....| ....+..+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~ 163 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRD 163 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHH
Confidence 3467789999999999999999999999864 345 67888888888765553 4455666666654433 23356677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 631 SNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 631 ~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+.++...|++++|...+++..+..
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 888999999999999999987644
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.3e-07 Score=102.73 Aligned_cols=146 Identities=10% Similarity=0.018 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHH
Q 044169 434 LPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILF 510 (742)
Q Consensus 434 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 510 (742)
.|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366777777777766543 3446677777777777888888888777665 234557777777777888888888888
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc---CCHHHHHHHHHhC
Q 044169 511 EKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA---GKLEIALIFISNL 584 (742)
Q Consensus 511 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 584 (742)
++..+. .|+ ...+..+..++...|++++|.+.+++..+. .+.+...+..+..++... |++++|.+.+++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 877764 343 456777777777788888888888777653 223456677777777777 7788887777764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.1e-07 Score=84.83 Aligned_cols=120 Identities=14% Similarity=-0.047 Sum_probs=64.5
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCH
Q 044169 529 LSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDL 606 (742)
Q Consensus 529 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~ 606 (742)
...+...|++++|.+.|++. +.|+...+..+..+|.+.|++++|++.+++.. .+.+...|..+...+...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence 33444445555555554433 12344445555555555555555555554432 122445555555556666666
Q ss_pred HHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 607 KMAEFISKQILELDPDDA----------------AVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 607 ~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
++|...++++++..|++. .++..++.+|...|++++|.+.+++..+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666555544 56666666666666666666666665543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.4e-06 Score=85.42 Aligned_cols=159 Identities=8% Similarity=0.002 Sum_probs=116.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc----HHHHHH
Q 044169 493 MIKAYSQNGRARKAIILFEKMVVEG-IRPTNS----TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE----EAHYSC 563 (742)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 563 (742)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+..++++.+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566778888888888888887632 122211 2334566677778889999888888763222233 236888
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHH
Q 044169 564 MVDLLGRAGKLEIALIFISNLP-----I---KPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDD------AAVYV 628 (742)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-----~---~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 628 (742)
+..+|...|++++|+..++++. . .+. ..++..+...|...|++++|...+++++++.++. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888999999988888887653 1 111 3367888889999999999999999999864322 67899
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHH
Q 044169 629 TLSNMYAEAGL-QADAEEQRKLMK 651 (742)
Q Consensus 629 ~l~~~y~~~g~-~~~A~~~~~~m~ 651 (742)
.++.+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999888775
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.65 E-value=3.1e-07 Score=80.58 Aligned_cols=97 Identities=13% Similarity=-0.074 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNLP-IK-PTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYA 635 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 635 (742)
...+..+...+.+.|++++|+..|++.. .. .+...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3456667788889999999999988754 33 468889999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 044169 636 EAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 636 ~~g~~~~A~~~~~~m~~~~ 654 (742)
..|++++|.+.++...+..
T Consensus 98 ~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999887543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.8e-07 Score=78.84 Aligned_cols=101 Identities=12% Similarity=-0.011 Sum_probs=89.8
Q ss_pred CCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 044169 554 ILPEE-AHYSCMVDLLGRAGKLEIALIFISNLP-I-KPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTL 630 (742)
Q Consensus 554 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 630 (742)
+.|+. ..+......|.+.|++++|++.|++.. . +.+...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 44543 467788999999999999999999864 3 44688999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 631 SNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 631 ~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+.+|...|++++|.+.|++..+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999987643
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.9e-06 Score=82.59 Aligned_cols=149 Identities=13% Similarity=0.150 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCC-----
Q 044169 501 GRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQ--DGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGK----- 573 (742)
Q Consensus 501 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~----- 573 (742)
+++++++.+++++.+.. +-+...|..-...+.+.|.++ ++++.++.+.+. -+-|...|+.-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 44555555555555431 222334444444444444444 555555555432 12233344444444444443
Q ss_pred -HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC---CCCchhHHHHHHHHHhcCCHHHHHHH
Q 044169 574 -LEIALIFISNLP--IKPTAPIWRPLFAACRCHSD-LKMAEFISKQILELD---PDDAAVYVTLSNMYAEAGLQADAEEQ 646 (742)
Q Consensus 574 -~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~y~~~g~~~~A~~~ 646 (742)
++++++.++++. .+.|...|+.+...+.+.|. .+....+++++++++ |.++.++..++++|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 555555554432 22345556555555555554 233444555555544 55666666666666666666666666
Q ss_pred HHHHHh
Q 044169 647 RKLMKM 652 (742)
Q Consensus 647 ~~~m~~ 652 (742)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666553
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.4e-07 Score=93.55 Aligned_cols=196 Identities=7% Similarity=-0.050 Sum_probs=148.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044169 434 LPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKM 513 (742)
Q Consensus 434 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 513 (742)
.|++++|.++++...+..- .. .+...+++++|...|.+ ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 4677888888888776421 11 01115788888888765 366788999999999999987
Q ss_pred HHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC--C--cHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044169 514 VVE----GIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGIL--P--EEAHYSCMVDLLGRAGKLEIALIFISNL 584 (742)
Q Consensus 514 ~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (742)
.+. |-.+. ..+|..+...|...|++++|+..|++..+...-. + ...++..+..+|.. |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 653 21111 2468888889999999999999999876532111 1 13567889999999 9999999999875
Q ss_pred C----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 585 P----IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPDDA------AVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 585 ~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
. ...+ ..++..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 1111 45678888899999999999999999999865432 36778888999999999999999988
Q ss_pred H
Q 044169 651 K 651 (742)
Q Consensus 651 ~ 651 (742)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-06 Score=83.13 Aligned_cols=183 Identities=13% Similarity=-0.029 Sum_probs=130.7
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC-ch---HHHH
Q 044169 421 EFTYSSILKACSLLPSLATCEQIHSRIVKSKFE-S-NVHVGSSLIEAYNKCGSWEDAERVFSQLT--AAD-VV---SWNS 492 (742)
Q Consensus 421 ~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~-~~---~~~~ 492 (742)
...+..+...+...|++++|...|+.+.+.... + ....+..+..+|.+.|++++|...|++.. .|+ .. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345556677788899999999999999886422 1 23577888999999999999999999876 333 22 4555
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 044169 493 MIKAYSQ------------------NGRARKAIILFEKMVVEGIRPTNS-TFLAVLSACSHSGLVQDGQKVFESMVKEYG 553 (742)
Q Consensus 493 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 553 (742)
+..++.. .|++++|+..|+++++. .|+.. ....... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5556554 57899999999999984 56653 2221111 001111110
Q ss_pred CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 554 ILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 554 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
.....+...|.+.|++++|+..|+++. ..|+ ...+..+..++.+.|+.++|.+.++.+....|++.
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 122356788999999999999998764 3343 24678888899999999999999999999888654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-06 Score=87.58 Aligned_cols=162 Identities=6% Similarity=-0.037 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCc--H
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN------STFLAVLSACSHSGLVQDGQKVFESMVKEYGI--LPE--E 558 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~--~ 558 (742)
.+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|.+.+++..+...- .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444566777888888888888877764221 22 12334455667778888888888887642111 111 3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------C
Q 044169 559 AHYSCMVDLLGRAGKLEIALIFISNLP----IKPT-----APIWRPLFAACRCHSDLKMAEFISKQILELDPD------D 623 (742)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~ 623 (742)
..++.+...|...|++++|+..+++.. ..|+ ..++..+...|...|++++|...+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 477888888999999998888887643 1222 257888888899999999999999999886431 1
Q ss_pred chhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 044169 624 AAVYVTLSNMYAEAGLQADA-EEQRKLMK 651 (742)
Q Consensus 624 ~~~~~~l~~~y~~~g~~~~A-~~~~~~m~ 651 (742)
..+|..++.+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 66889999999999999999 77777665
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.59 E-value=8.3e-07 Score=79.89 Aligned_cols=125 Identities=9% Similarity=-0.044 Sum_probs=91.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHH
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRC 602 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 602 (742)
+..+...+...|++++|...|+...+. .+.+...+..++.++...|++++|++.+++.. .+.+...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444555566666666666666666542 22345566667777777777777777776543 23357778888888999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCCHHHHHHHHHHHH
Q 044169 603 HSDLKMAEFISKQILELDPDDAAVYVTLSNM--YAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 603 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~A~~~~~~m~ 651 (742)
.|++++|...++++++..|++...+..+..+ +...|++++|.+.+....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999999988887554444 888999999999988765
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.2e-05 Score=76.77 Aligned_cols=228 Identities=7% Similarity=-0.004 Sum_probs=167.4
Q ss_pred CCCcHHHHHHHHHHhHcCCCCC-hHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc--
Q 044169 399 NQKTEEAIEAFSQMVRNDAACD-EFTYSSILKACSLLP--SLATCEQIHSRIVKSKFESNVHVGSSLIEAY----NKC-- 469 (742)
Q Consensus 399 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g--~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~----~~~-- 469 (742)
....++|++++.+++..+ |+ ...|+.--..+...+ .++++..+++.+...+ +-+..+|+.-...+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 344467888888877753 43 344555555556666 8888888888887764 34445555444444 444
Q ss_pred -CCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc------
Q 044169 470 -GSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRAR--KAIILFEKMVVEGIRPTNSTFLAVLSACSHSGL------ 537 (742)
Q Consensus 470 -g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 537 (742)
++++++.++++++. +.|..+|+.-...+.+.|+++ ++++.++++.+.. .-|...|+.-.....+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 78899999998886 556678888888888888888 9999999999863 3345667666666666665
Q ss_pred HHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHH-HHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHH
Q 044169 538 VQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEI-ALIFISNLPI-----KPTAPIWRPLFAACRCHSDLKMAEF 611 (742)
Q Consensus 538 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~a~~ 611 (742)
++++++.++.++. -.+-|...|+.+..++.+.|+..+ +.++.++... ..++..+..+...+.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 8999999998876 334567788888888888888544 5567666541 3467889999999999999999999
Q ss_pred HHHHHHh-cCCCCchhHHHHHH
Q 044169 612 ISKQILE-LDPDDAAVYVTLSN 632 (742)
Q Consensus 612 ~~~~~~~-~~p~~~~~~~~l~~ 632 (742)
+++.+.+ .+|-....+...+.
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHHh
Confidence 9999997 79987777766554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.9e-06 Score=85.84 Aligned_cols=159 Identities=11% Similarity=0.046 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCchHHHH-HHHHHH
Q 044169 422 FTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT--AADVVSWNS-MIKAYS 498 (742)
Q Consensus 422 ~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~-li~~~~ 498 (742)
..+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...++++. .|+...... ....+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 344455555556666666666666665543 3345566666667777777777777777665 233322222 122344
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHH
Q 044169 499 QNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIA 577 (742)
Q Consensus 499 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 577 (742)
+.++.++|+..+++.... .|+ ...+..+..++...|++++|...|.++.+...-..+...+..++.+|...|+.++|
T Consensus 197 ~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred hhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 555666666666666653 343 35566666666666777777766666655321112244566666666666666666
Q ss_pred HHHHHh
Q 044169 578 LIFISN 583 (742)
Q Consensus 578 ~~~~~~ 583 (742)
...+++
T Consensus 275 ~~~~r~ 280 (287)
T 3qou_A 275 ASXYRR 280 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-06 Score=74.38 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 044169 523 STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAAC 600 (742)
Q Consensus 523 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 600 (742)
..+..+...+...|++++|.+.++++.+. .+.+...+..++.++.+.|++++|...++++. .+.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34555555666666666666666666542 12344556666667777777777777766543 234567788888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 601 RCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 601 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999999999988888888888877654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.6e-07 Score=93.34 Aligned_cols=190 Identities=9% Similarity=-0.014 Sum_probs=123.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 044169 456 VHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSA 531 (742)
Q Consensus 456 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 531 (742)
...+..+...|.+.|++++|...|++.. +.+...|..+..+|.+.|++++|+..+++..+. .|+ ...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4455666777777788888888777665 335667777888888888888888888887763 454 3567777778
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044169 532 CSHSGLVQDGQKVFESMVKEYGILPEE-AHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAE 610 (742)
Q Consensus 532 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 610 (742)
+...|++++|...|+...+.. |+. ..+...+....+..+...... .......++......+ ..+ ..|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 888888888888887775421 211 011111111111111111111 2222323344443333 222 268889999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHHhC
Q 044169 611 FISKQILELDPDDAAVYVTLSNMYAEA-GLQADAEEQRKLMKMK 653 (742)
Q Consensus 611 ~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~A~~~~~~m~~~ 653 (742)
+.++++++++|++......+...+.+. +.+++|.++|.++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998888888888888777 7799999999888653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.6e-07 Score=82.90 Aligned_cols=156 Identities=11% Similarity=-0.010 Sum_probs=106.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-Hhc
Q 044169 459 GSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSA-CSH 534 (742)
Q Consensus 459 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~ 534 (742)
...+...+.+.|++++|...|++.. +.+...|..+...+...|++++|+..+++.... .|+...+...... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 3455666778888888888888776 345667888888888888888888888887653 3443322222111 112
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHHcCCHHHHH
Q 044169 535 SGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT---APIWRPLFAACRCHSDLKMAE 610 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~g~~~~a~ 610 (742)
.+...+|...+++..+. .+.+...+..+..+|...|++++|+..|+++. ..|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22223467777777652 22346777888888888888888888887753 3443 557888888888888888888
Q ss_pred HHHHHHHh
Q 044169 611 FISKQILE 618 (742)
Q Consensus 611 ~~~~~~~~ 618 (742)
..+++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=9.5e-07 Score=75.61 Aligned_cols=116 Identities=10% Similarity=-0.018 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 044169 523 STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAAC 600 (742)
Q Consensus 523 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 600 (742)
..+..+...+...|++++|.+.+++..+. .+.+...+..+..++...|++++|++.+++.. .+.+...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34555556666667777777777666542 22345566667777777777777777776643 233577788888889
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 044169 601 RCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQ 640 (742)
Q Consensus 601 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 640 (742)
...|++++|...++++++..|+++..+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999888875
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=9.1e-07 Score=76.12 Aligned_cols=114 Identities=13% Similarity=0.016 Sum_probs=74.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACR 601 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 601 (742)
.+..+...+...|++++|.+.|++..+ ..+.+...+..+..+|...|++++|++.+++.. .+.+...|..+...+.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 344455555555555555555555543 112234455555566666666666666665532 2335667777888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC
Q 044169 602 CHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGL 639 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 639 (742)
..|++++|...++++++.+|++...+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888877664
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=7.6e-07 Score=81.41 Aligned_cols=120 Identities=9% Similarity=0.052 Sum_probs=85.8
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHH-HHHcCCH--H
Q 044169 533 SHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-I-KPTAPIWRPLFAA-CRCHSDL--K 607 (742)
Q Consensus 533 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~-~~~~g~~--~ 607 (742)
...|++++|...++...+. .+.+...+..+..+|...|++++|+..|++.. . +.+...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456667777777766552 23355667777777777777777777777653 2 2356677777777 6778887 8
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 608 MAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 608 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+|...++++++.+|+++..+..++.+|...|++++|...++++.+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888888888888888888999999999988888887654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-06 Score=81.31 Aligned_cols=145 Identities=10% Similarity=-0.032 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 044169 459 GSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLV 538 (742)
Q Consensus 459 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 538 (742)
+..+...+...|++++|.+.|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34455666677777777777777666666667777777777777777777777666542 22335566666666666666
Q ss_pred HHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044169 539 QDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKP-TAPIWRPLFAACRCHSDLKMAEFISKQIL 617 (742)
Q Consensus 539 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 617 (742)
++|.+.|+...+...-.+... +...| +...| ....+..+..++...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 666666666654211111000 00000 01122 24677888888999999999999999999
Q ss_pred hcCCCC
Q 044169 618 ELDPDD 623 (742)
Q Consensus 618 ~~~p~~ 623 (742)
++.|++
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 999865
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.50 E-value=1e-06 Score=75.36 Aligned_cols=97 Identities=13% Similarity=-0.022 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYA 635 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 635 (742)
...+..+...+.+.|++++|++.|++.. .+.+...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3456677778888888888888887753 33467888888889999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 044169 636 EAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 636 ~~g~~~~A~~~~~~m~~~~ 654 (742)
..|++++|.+.+++..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 9999999999998877543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.3e-06 Score=78.32 Aligned_cols=172 Identities=9% Similarity=-0.055 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC----CHHHHHHHHHHHH
Q 044169 440 CEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT-AADVVSWNSMIKAYSQNG----RARKAIILFEKMV 514 (742)
Q Consensus 440 a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 514 (742)
|.+.|....+.| +...+..|..+|...+++++|.+.|++.. ..++..+..|...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 445555555543 55566667777777788888888887765 3456677777777776 6 8888999998887
Q ss_pred HcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCc---HHHHHHHHHHHhh----cCCHHHHHHHHHh
Q 044169 515 VEGIRPTNSTFLAVLSACSH----SGLVQDGQKVFESMVKEYGILPE---EAHYSCMVDLLGR----AGKLEIALIFISN 583 (742)
Q Consensus 515 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 583 (742)
+.| +...+..+...|.. .+++++|.+.|++..+ ..|+ ...+..|..+|.. .+++++|++.|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 45666777777776 7889999999988754 2332 6677888888888 7889999999987
Q ss_pred CC-CCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCC
Q 044169 584 LP-IKPTAPIWRPLFAACRCH-S-----DLKMAEFISKQILELDP 621 (742)
Q Consensus 584 ~~-~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p 621 (742)
.. ..++...+..|...|... | +.++|...++++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 64 225666777777777643 3 89999999999988864
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-06 Score=88.70 Aligned_cols=94 Identities=13% Similarity=-0.044 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYA 635 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 635 (742)
...|..+..+|.+.|++++|+..+++.. .+.+...|..+..++...|++++|...++++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3567888888999999999998888764 33468889999999999999999999999999999999999999999999
Q ss_pred hcCCHHHH-HHHHHHHH
Q 044169 636 EAGLQADA-EEQRKLMK 651 (742)
Q Consensus 636 ~~g~~~~A-~~~~~~m~ 651 (742)
..|++++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44555553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.44 E-value=2.5e-05 Score=83.95 Aligned_cols=344 Identities=10% Similarity=-0.006 Sum_probs=178.5
Q ss_pred hCC-ChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-hhHHHHHH
Q 044169 265 KCG-MMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRN-SHMGYMFH 342 (742)
Q Consensus 265 ~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~i~ 342 (742)
+.| +++.|+.+|+.+.. .+-. |+++.+..+|++.... .|+...|..-+.-..+.++ .+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 345 36667666665432 2211 7888888898888764 4788887777776665553 35566777
Q ss_pred HHHHHh-CCC-CchHHHHHHHHHHHh----CCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcC
Q 044169 343 AQVIKR-GMA-LGDFVGTAIVDMYSG----LGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRND 416 (742)
Q Consensus 343 ~~~~~~-g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 416 (742)
+..+.. |.. .+..+|...+..+.. .|+++.+.++|++.-..|.. .+..+-..| ..+...
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~-~~~~lw~~Y-------------~~fE~~- 136 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMG-SLSELWKDF-------------ENFELE- 136 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCT-THHHHHHHH-------------HHHHHH-
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhh-hHHHHHHHH-------------HHHHHH-
Confidence 776664 433 356777777765542 35677788888776212211 111111111 111110
Q ss_pred CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CC-----HHHHHHHHHhcC---CCC
Q 044169 417 AACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKC--GS-----WEDAERVFSQLT---AAD 486 (742)
Q Consensus 417 ~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~--g~-----~~~A~~~~~~~~---~~~ 486 (742)
.+..+...++.... +.+..|..++..+...--..+...|...++.-... |- .+.+..+|+++. ...
T Consensus 137 --~~~~~~~~~~~~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~ 212 (493)
T 2uy1_A 137 --LNKITGKKIVGDTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYA 212 (493)
T ss_dssp --HCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred --hccccHHHHHHHHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCC
Confidence 01111111111110 12233344443333210001223444444332211 00 234555666654 344
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC--------CCC--
Q 044169 487 VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYG--------ILP-- 556 (742)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--------~~p-- 556 (742)
...|...+.-+.+.|+.++|..++++.... |....+......+...+. +++.+.+..- ..+
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~------~~~~l~~~~~~~~~~~~~~~~~~ 283 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEA------VYGDLKRKYSMGEAESAEKVFSK 283 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTH------HHHHHHHHTC----------CHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhH------HHHHHHHHHHhhccchhhhhccc
Confidence 567777777777888888888888888875 544322211111111111 1222221110 001
Q ss_pred -cHHHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044169 557 -EEAHYSCMVDLLGRAGKLEIALIFISNLPIK-PTAPIWRPLFAAC-RCHSDLKMAEFISKQILELDPDDAAVYVTLSNM 633 (742)
Q Consensus 557 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 633 (742)
....|...++.+.+.|..+.|.++|++...+ .+...|......- ...++.+.|..+++.+++..|+++..+...++.
T Consensus 284 ~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 284 ELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 1235666677777777888888888776311 1334443322222 223368888888888888778777777777777
Q ss_pred HHhcCCHHHHHHHHHHH
Q 044169 634 YAEAGLQADAEEQRKLM 650 (742)
Q Consensus 634 y~~~g~~~~A~~~~~~m 650 (742)
..+.|+.+.|..+|+.+
T Consensus 364 e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHTCHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 77888888888888775
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.9e-06 Score=75.53 Aligned_cols=95 Identities=12% Similarity=-0.023 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYA 635 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 635 (742)
...+..+...+.+.|++++|++.|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3345555556666666666666665542 222 45566666666666666666666666666666666666666666666
Q ss_pred hcCCHHHHHHHHHHHHh
Q 044169 636 EAGLQADAEEQRKLMKM 652 (742)
Q Consensus 636 ~~g~~~~A~~~~~~m~~ 652 (742)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666666654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-06 Score=74.33 Aligned_cols=94 Identities=16% Similarity=0.063 Sum_probs=82.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
+..+...+.+.|++++|+..|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4556778889999999999998764 344 68889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 044169 639 LQADAEEQRKLMKMKE 654 (742)
Q Consensus 639 ~~~~A~~~~~~m~~~~ 654 (742)
++++|...+++..+..
T Consensus 100 ~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 100 NANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999887644
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.8e-06 Score=74.98 Aligned_cols=105 Identities=6% Similarity=-0.084 Sum_probs=86.0
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHH
Q 044169 518 IRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWR 594 (742)
Q Consensus 518 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~ 594 (742)
+.|+. ..+..+...+.+.|++++|...|+.+.+. -+.+...|..+..+|.+.|++++|++.|++.. ..| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 45554 45777778888999999999999998763 23457788889999999999999999998764 344 578899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 595 PLFAACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 595 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
.+..++...|++++|...+++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.1e-06 Score=73.30 Aligned_cols=99 Identities=13% Similarity=-0.068 Sum_probs=84.1
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044169 556 PEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNM 633 (742)
Q Consensus 556 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 633 (742)
.+...+..+...+...|++++|+..|++.. .+.+...|..+...+...|++++|...++++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 456677778888888888888888887653 234577888888899999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 044169 634 YAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 634 y~~~g~~~~A~~~~~~m~~~~ 654 (742)
|...|++++|...+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999887543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=7.3e-07 Score=78.77 Aligned_cols=109 Identities=13% Similarity=0.024 Sum_probs=81.8
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHH
Q 044169 518 IRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWR 594 (742)
Q Consensus 518 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~ 594 (742)
+.|+. ..+..+...+...|++++|...|+...+. -+.+...|..+..+|...|++++|++.|++.. ..| ++..|.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 34543 45666667777888888888888877652 23456677778888888888888888887753 333 577888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 044169 595 PLFAACRCHSDLKMAEFISKQILELDPDDAAVYV 628 (742)
Q Consensus 595 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 628 (742)
.+..++...|++++|...+++++++.|+++....
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 8888899999999999999999999997776543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.39 E-value=3.6e-05 Score=76.73 Aligned_cols=158 Identities=9% Similarity=-0.034 Sum_probs=116.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---Cch------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 044169 462 LIEAYNKCGSWEDAERVFSQLTAA---DVV------SWNSMIKAYSQNGRARKAIILFEKMVVEGIR-PT----NSTFLA 527 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~~~---~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ 527 (742)
.+..+...|++++|..++++.... +.. .+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466788889999999999876521 111 2334666677778999999999999874222 22 125888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhc----CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCC-HHHHH
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEY----GILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP-------IKPT-APIWR 594 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~ 594 (742)
+..+|...|++++|..+|+++.+.. +..+. ..++..+..+|.+.|++++|++.+++.. ..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999887421 22222 2367889999999999999999887653 1222 66788
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHhc
Q 044169 595 PLFAACRCHS-DLKMAEFISKQILEL 619 (742)
Q Consensus 595 ~l~~~~~~~g-~~~~a~~~~~~~~~~ 619 (742)
.+..++...| ++++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8888999999 569999999998774
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.38 E-value=7.7e-06 Score=79.27 Aligned_cols=123 Identities=11% Similarity=-0.042 Sum_probs=70.6
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHc
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTA----PIWRPLFAACRCH 603 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~ 603 (742)
...++...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 34455566666666666665532 2243334444555666666666666666654422322 2455555566666
Q ss_pred CCHHHHHHHHHHHHhcC--CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 604 SDLKMAEFISKQILELD--PD-DAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 604 g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
|++++|+..++++.... |. .+.....++.++.+.|+.++|...|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666666666666432 33 3345566666666666666666666666543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-06 Score=71.53 Aligned_cols=98 Identities=13% Similarity=0.052 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPD--DAAVYVTLSNM 633 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 633 (742)
...+..+...+.+.|++++|+..+++.. .+.+...|..+...+...|++++|...++++++..|+ +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3455667777788888888888877653 2346778888888899999999999999999999998 89999999999
Q ss_pred HHhc-CCHHHHHHHHHHHHhCCC
Q 044169 634 YAEA-GLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 634 y~~~-g~~~~A~~~~~~m~~~~~ 655 (742)
|... |++++|.+.++...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999998876554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-05 Score=80.08 Aligned_cols=162 Identities=10% Similarity=-0.039 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Cc------hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HH
Q 044169 458 VGSSLIEAYNKCGSWEDAERVFSQLTA--A-DV------VSWNSMIKAYSQNGRARKAIILFEKMVVEGI---RPT--NS 523 (742)
Q Consensus 458 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 523 (742)
.+...+..+...|++++|.+.+.+... + .. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566777888888888888875431 1 11 1233455566778899999999988875321 122 24
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhCC-------CCC-CH
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKE---YGILPE--EAHYSCMVDLLGRAGKLEIALIFISNLP-------IKP-TA 590 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p-~~ 590 (742)
+++.+...|...|++++|...++++.+. .+..+. ..++..++.+|.+.|++++|++.+++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6788888888999999999999888632 221221 2477888889999999999998887643 111 15
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 044169 591 PIWRPLFAACRCHSDLKMA-EFISKQILEL 619 (742)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 619 (742)
.++..+...+...|++++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6778888889999999999 7778887764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=5.2e-06 Score=69.34 Aligned_cols=95 Identities=14% Similarity=-0.020 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 044169 559 AHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAE 636 (742)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 636 (742)
..+..++..+...|++++|.+.+++.. .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344555556666666666666665542 223455666666666666666667666666666666666666667777777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 044169 637 AGLQADAEEQRKLMKMK 653 (742)
Q Consensus 637 ~g~~~~A~~~~~~m~~~ 653 (742)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHc
Confidence 77777777666666543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=4e-06 Score=78.18 Aligned_cols=167 Identities=9% Similarity=-0.024 Sum_probs=102.4
Q ss_pred HHhcCCHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 044169 466 YNKCGSWEDAERVFSQLTA---ADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQ 542 (742)
Q Consensus 466 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 542 (742)
....|+++++.+.|+.-.. .....|..+...+...|++++|+..|++..+. .|+...+... ....-.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~~ 83 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDKK 83 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHHH
Confidence 3444556666555543321 13345666677777777777777777777763 2322100000 000000
Q ss_pred HHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 044169 543 KVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELD 620 (742)
Q Consensus 543 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 620 (742)
.. .....+..+..+|.+.|++++|+..+++.. .+.+...+..+..++...|++++|...++++++++
T Consensus 84 ---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 84 ---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 00 013566777888888888888888887753 33467888889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHH-HHHHHHHhC
Q 044169 621 PDDAAVYVTLSNMYAEAGLQADAE-EQRKLMKMK 653 (742)
Q Consensus 621 p~~~~~~~~l~~~y~~~g~~~~A~-~~~~~m~~~ 653 (742)
|+++.++..++.++...|+.+++. ..++.|-..
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999888877 455555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=8.1e-06 Score=68.14 Aligned_cols=109 Identities=13% Similarity=0.033 Sum_probs=73.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACR 601 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 601 (742)
.+..+...+...|++++|...++...+. .+.+...+..+..++.+.|++++|...+++.. .+.+...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444555555566666666666665442 12344556666666666677777766666542 2235677788888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 602 CHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
..|++++|...++++++.+|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 889999999999999999998888777776654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.32 E-value=5.3e-06 Score=70.09 Aligned_cols=97 Identities=21% Similarity=0.210 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYA 635 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 635 (742)
...+..++..+.+.|++++|.+.++++. .+.+..++..+...+...|++++|...++++++..|+++.++..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4678888999999999999999998864 34468889999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 044169 636 EAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 636 ~~g~~~~A~~~~~~m~~~~ 654 (742)
..|++++|.+.++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987643
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.4e-06 Score=84.43 Aligned_cols=137 Identities=12% Similarity=-0.047 Sum_probs=102.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc--HHHHHHHHHH
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE--EAHYSCMVDL 567 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~ 567 (742)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+ .. .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHH
Confidence 344567778889999999999888764 46555555555678889999999999986532 11 121 2357778889
Q ss_pred HhhcCCHHHHHHHHHhCCCC---CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 044169 568 LGRAGKLEIALIFISNLPIK---PT--APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLS 631 (742)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~---p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 631 (742)
+.+.|++++|+..|++.... |. ...+.....++.+.|+.++|...++++...+|+ +.....|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999999999886422 42 346777888899999999999999999999996 66555553
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.8e-06 Score=72.73 Aligned_cols=94 Identities=7% Similarity=-0.010 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-------hhHHH
Q 044169 559 AHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDA-------AVYVT 629 (742)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~ 629 (742)
..+..+...+.+.|++++|++.|++.. ..| +...|..+..+|...|++++|+..++++++++|++. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 346678888888999999998888754 344 678899999999999999999999999999987654 36788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 044169 630 LSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 630 l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
++.+|...|++++|++.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999988765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.30 E-value=3.7e-06 Score=73.56 Aligned_cols=108 Identities=16% Similarity=-0.032 Sum_probs=77.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHH
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-I-KPTAPIWRPLFAACR 601 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~ 601 (742)
.+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|+..|++.. . +.++..|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4455556667777777777777777652 23355667777777777888888877777653 2 335677788888889
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044169 602 CHSDLKMAEFISKQILELDPDDAAVYVTLSNM 633 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 633 (742)
..|++++|...+++++++.|+++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999999988877765554433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.6e-06 Score=71.56 Aligned_cols=100 Identities=10% Similarity=-0.016 Sum_probs=89.2
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044169 555 LPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSN 632 (742)
Q Consensus 555 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 632 (742)
+.+...+..+...+.+.|++++|++.+++.. ..| +...|..+...+...|++++|...++++++..|+++.++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3456678889999999999999999998853 344 68889999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 044169 633 MYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 633 ~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+|...|++++|.+.+++..+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999887643
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.4e-06 Score=76.21 Aligned_cols=127 Identities=5% Similarity=0.033 Sum_probs=96.4
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHH-HhhcCCH--
Q 044169 498 SQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDL-LGRAGKL-- 574 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~-~~~~g~~-- 574 (742)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 35678888888888887752 3345678888888888999999999998887632 3356677778888 7788988
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 044169 575 EIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVY 627 (742)
Q Consensus 575 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 627 (742)
++|+..+++.. ..| +...|..+...+...|++++|...++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999888764 334 577888888899999999999999999999999876544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=8e-06 Score=69.60 Aligned_cols=110 Identities=10% Similarity=-0.052 Sum_probs=72.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACR 601 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 601 (742)
.+......+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|++.+++.. ..| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444555566666666666666666542 22345566666666777777777776666543 233 5677778888888
Q ss_pred HcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHH
Q 044169 602 CHSDLKMAEFISKQILELD------PDDAAVYVTLSNMYA 635 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~ 635 (742)
..|++++|...++++++++ |++......+..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 8888888888888888888 777776666665543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-05 Score=75.23 Aligned_cols=116 Identities=16% Similarity=0.076 Sum_probs=54.5
Q ss_pred hcCCHHHHHH---HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCcHH
Q 044169 468 KCGSWEDAER---VFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVE----GIRPTN-STFLAVLSACSHSGLVQ 539 (742)
Q Consensus 468 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~ 539 (742)
..|++++|.+ .+..-+......+..+...|...|++++|+..+++..+. |..|.. ..+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 333322223345555666666666666666666655441 111111 33555555566666666
Q ss_pred HHHHHHHHhHHhcCCCC-c----HHHHHHHHHHHhhcCCHHHHHHHHHh
Q 044169 540 DGQKVFESMVKEYGILP-E----EAHYSCMVDLLGRAGKLEIALIFISN 583 (742)
Q Consensus 540 ~a~~~~~~m~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (742)
+|.+.+++..+...-.+ + ...+..+..++...|++++|...+++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66666655543211111 1 12344444555555555555554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.27 E-value=2e-05 Score=73.37 Aligned_cols=154 Identities=10% Similarity=0.021 Sum_probs=114.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCC-cHHHHHHHHHHHhhcCC
Q 044169 498 SQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEY---GILP-EEAHYSCMVDLLGRAGK 573 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~l~~~~~~~g~ 573 (742)
...|++++|.+.++.+... .......+..+...+...|++++|...+++..+.. +..| ....+..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4679999999966555431 11234678888889999999999999999886522 2222 24467888999999999
Q ss_pred HHHHHHHHHhCC----CCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCc----hhHHHHHHHHHhcC
Q 044169 574 LEIALIFISNLP----IKP-T----APIWRPLFAACRCHSDLKMAEFISKQILELD--PDDA----AVYVTLSNMYAEAG 638 (742)
Q Consensus 574 ~~~A~~~~~~~~----~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~----~~~~~l~~~y~~~g 638 (742)
+++|.+.+++.. ..+ + ...+..+...+...|++++|...++++++.. ..++ .++..++.+|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 999999987653 122 2 3457778888999999999999999998753 2222 34688999999999
Q ss_pred CHHHHHHHHHHHHh
Q 044169 639 LQADAEEQRKLMKM 652 (742)
Q Consensus 639 ~~~~A~~~~~~m~~ 652 (742)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999887764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.8e-05 Score=70.84 Aligned_cols=126 Identities=10% Similarity=-0.068 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHh
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLG 569 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 569 (742)
|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+...+..+..++.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 4444455555555555555555555431 223344555555555555555555555555442 1223445555555555
Q ss_pred hcCCHHHHHHHHHhCC-CCC-CHHHHHHHHH--HHHHcCCHHHHHHHHHHHHh
Q 044169 570 RAGKLEIALIFISNLP-IKP-TAPIWRPLFA--ACRCHSDLKMAEFISKQILE 618 (742)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~ 618 (742)
+.|++++|.+.+++.. ..| +...+..+.. .+...|++++|...+++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 5566666555555432 122 3333322222 24455666666666655544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.24 E-value=8.9e-06 Score=73.13 Aligned_cols=108 Identities=12% Similarity=0.008 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 044169 523 STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAAC 600 (742)
Q Consensus 523 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 600 (742)
..+..+...+...|++++|++.|++..+. .+.+...|..+..+|.+.|++++|+..|++.. ..| +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44566666677777777777777777652 22355667777778888888888888777653 233 578888999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044169 601 RCHSDLKMAEFISKQILELDPDDAAVYVTLSN 632 (742)
Q Consensus 601 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 632 (742)
...|++++|...++++++++|+++..+...+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999998886655443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.1e-05 Score=68.87 Aligned_cols=109 Identities=9% Similarity=-0.054 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHH
Q 044169 523 STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE----EAHYSCMVDLLGRAGKLEIALIFISNLP-I-KPTAPIWRPL 596 (742)
Q Consensus 523 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l 596 (742)
..+..+...+...|++++|.+.|++..+ ..|+ ...+..+..+|...|++++|++.+++.. . +.+...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3344444455555555555555555432 2233 3445555556666666666666655432 2 2345666777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 597 FAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 597 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
..++...|++++|...++++++++|++..++..+..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 77777778888888888888888887776666665554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-05 Score=68.63 Aligned_cols=98 Identities=13% Similarity=0.024 Sum_probs=87.7
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 557 EEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
+...+..++..+...|++++|.+.+++.. .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45567888899999999999999998864 3346888999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 044169 635 AEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 635 ~~~g~~~~A~~~~~~m~~~~ 654 (742)
...|++++|.+.+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999887643
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-05 Score=70.37 Aligned_cols=99 Identities=18% Similarity=0.047 Sum_probs=88.9
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 044169 556 PEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTL 630 (742)
Q Consensus 556 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 630 (742)
.+...+..+...+...|++++|++.|++.. ..|+ ...|..+...+...|++++|...++++++..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 356678889999999999999999999853 5676 67788888899999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 631 SNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 631 ~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+.+|...|++++|.+.+++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999887643
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00013 Score=73.17 Aligned_cols=177 Identities=14% Similarity=0.083 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcC---CCCchHHHHHHHHHHHc-C-CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHH------
Q 044169 472 WEDAERVFSQLT---AADVVSWNSMIKAYSQN-G-RARKAIILFEKMVVEGIRP-TNSTFLAVLSACSHSGLVQ------ 539 (742)
Q Consensus 472 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~------ 539 (742)
++++.+.++.+. ..+..+|+.-...+.+. + ++++++++++++.+. .| |...|+.-...+.+.|.++
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhh
Confidence 444444444443 22333444444443333 3 445555555555542 22 2233333333333333332
Q ss_pred --HHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCC-------HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCH--
Q 044169 540 --DGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGK-------LEIALIFISNLP--IKPTAPIWRPLFAACRCHSDL-- 606 (742)
Q Consensus 540 --~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~-- 606 (742)
++++.++++.+. -+-|...|+....++.+.|+ ++++++.+++.. .+.|...|+-+-..+.+.|..
T Consensus 183 ~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 183 WGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcc
Confidence 555555555542 22344455555555555554 456666665432 233566666655555554432
Q ss_pred ------------------HHHHHHHHHHHhcC------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 607 ------------------KMAEFISKQILELD------PDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 607 ------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
.........+.... +.++.+...|+++|.+.|+.++|.++++.+.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22233333332222 45777889999999999999999999999864
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.19 E-value=7.4e-06 Score=71.55 Aligned_cols=62 Identities=15% Similarity=0.056 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCchhH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 591 PIWRPLFAACRCHSDLKMAEFISKQILEL-------DPDDAAVY----VTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
..|..+..++.+.|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888888889999999999999999988 99999999 9999999999999999999998875
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.18 E-value=7.2e-06 Score=70.08 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=61.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHH
Q 044169 564 MVDLLGRAGKLEIALIFISNLP-IKPT-A---PIWRPLFAACRCHSDLKMAEFISKQILELDPDD---AAVYVTLSNMYA 635 (742)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~ 635 (742)
+...+.+.|++++|.+.|++.. ..|+ . ..+..+..++...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 4455666666666666666543 1232 2 356666667777777777777777777777776 666777777788
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 044169 636 EAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 636 ~~g~~~~A~~~~~~m~~~ 653 (742)
..|++++|.+.++.+.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888887777777653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.17 E-value=8.6e-06 Score=87.35 Aligned_cols=118 Identities=8% Similarity=-0.033 Sum_probs=91.7
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHH
Q 044169 530 SACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLK 607 (742)
Q Consensus 530 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~ 607 (742)
..+.+.|++++|.+.+++..+. .+.+...|..+..+|.+.|++++|++.+++.. ..| +...|..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3456677888888888877653 23346677888888888888888888887753 344 5778899999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHH--HHhcCCHHHHHHHHHH
Q 044169 608 MAEFISKQILELDPDDAAVYVTLSNM--YAEAGLQADAEEQRKL 649 (742)
Q Consensus 608 ~a~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~A~~~~~~ 649 (742)
+|++.++++++++|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999888 8999999999999874
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.4e-05 Score=69.04 Aligned_cols=112 Identities=7% Similarity=-0.138 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 044169 521 TNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFA 598 (742)
Q Consensus 521 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~ 598 (742)
+...+..+...+...|++++|...|+...+. .+.+...+..+..+|...|++++|+..+++.. .+.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3455666666666666666666666666542 22345566666777777777777777766543 2335677788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-----CchhHHHHHHHH
Q 044169 599 ACRCHSDLKMAEFISKQILELDPD-----DAAVYVTLSNMY 634 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~y 634 (742)
++...|++++|...+++++++.|+ +......+..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888776 444444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.13 E-value=2.3e-05 Score=83.62 Aligned_cols=144 Identities=13% Similarity=0.027 Sum_probs=101.8
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 487 VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
...|..+...|.+.|++++|+..|++.++. .|+...+ . -+...+ ... .....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HHH--------HHHHHHHHHHH
Confidence 446777777788888888888888877763 2322100 0 011100 000 11356778888
Q ss_pred HHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 044169 567 LLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAE 644 (742)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 644 (742)
+|.+.|++++|+..+++.. .+.+...|..+..+|...|++++|+..++++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988764 33468889999999999999999999999999999999999999999999999999887
Q ss_pred H-HHHHHHh
Q 044169 645 E-QRKLMKM 652 (742)
Q Consensus 645 ~-~~~~m~~ 652 (742)
+ .++.|-.
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 5 4555543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.4e-05 Score=70.04 Aligned_cols=64 Identities=20% Similarity=0.199 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 590 APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4577888888899999999999999999999999999999999999999999999999887754
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0014 Score=65.57 Aligned_cols=238 Identities=13% Similarity=0.029 Sum_probs=162.1
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 044169 390 NAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLP-SLATCEQIHSRIVKSKFESNVHVGSSLIEAYNK 468 (742)
Q Consensus 390 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 468 (742)
+.+-....+.+..++|++++++++..+ +-+...|+.--..+...| .++++..+++.+...+ +-+..+|+.-..++.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333334445566678999998888764 223444555555555566 5889999998888765 5566777776666666
Q ss_pred c-C-CHHHHHHHHHhcCC---CCchHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 044169 469 C-G-SWEDAERVFSQLTA---ADVVSWNSMIKAYSQNGRAR--------KAIILFEKMVVEGIRPTNSTFLAVLSACSHS 535 (742)
Q Consensus 469 ~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 535 (742)
. + +++++.++++++.. .|..+|+--...+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTS
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 6 6 88899999998874 35557776665655555555 8999999999863 33556777777777777
Q ss_pred Cc-------HHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCH--------------------HHHHHHHHhCCC--
Q 044169 536 GL-------VQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKL--------------------EIALIFISNLPI-- 586 (742)
Q Consensus 536 g~-------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~-- 586 (742)
+. ++++++.+++++. -.+-|...|+.+-..+.+.|+. .+..++..++..
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred cccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 65 7888888888876 2344566777777777766653 344444444431
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCCchhHHHHHH
Q 044169 587 ------KPTAPIWRPLFAACRCHSDLKMAEFISKQIL-ELDPDDAAVYVTLSN 632 (742)
Q Consensus 587 ------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~ 632 (742)
.+.+..+..++..|...|+.++|.++++.+. +.+|-....+...+.
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2567788889999999999999999999997 568865555554443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.3e-05 Score=68.45 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------chhHHH
Q 044169 559 AHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD-------AAVYVT 629 (742)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 629 (742)
..+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|...++++++..|++ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 456667778888888888888887653 33467778888888999999999999999999987765 788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 630 LSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 630 l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
++.+|...|++++|.+.++.+.+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988763
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00092 Score=66.65 Aligned_cols=178 Identities=10% Similarity=0.041 Sum_probs=96.4
Q ss_pred HHHHHHHHhcC---CCCchHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-HHHHHHHHH
Q 044169 473 EDAERVFSQLT---AADVVSWNSMIKAYSQNG--RARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGL-VQDGQKVFE 546 (742)
Q Consensus 473 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~ 546 (742)
+++..+++.+. +.+..+|+.-...+...| ++++++.+++++.+.. +-|...|+.-...+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 44444444443 334445555555555555 3566666666666532 2233444444444444454 456666666
Q ss_pred HhHHhcCCCCcHHHHHHHHHHHhhc--------------CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHc-------
Q 044169 547 SMVKEYGILPEEAHYSCMVDLLGRA--------------GKLEIALIFISNLP--IKPTAPIWRPLFAACRCH------- 603 (742)
Q Consensus 547 ~m~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~------- 603 (742)
.+.+. -+-|...|+....++.+. +.++++++.+.+.. .+.|..+|+-+-..+.+.
T Consensus 170 ~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 170 SLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 66542 223444444444444333 34666666666543 233566666555554443
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH---hcCCHHHHHHHHHHHHhC
Q 044169 604 ----SDLKMAEFISKQILELDPDDAAVYVTLSNMYA---EAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 604 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~---~~g~~~~A~~~~~~m~~~ 653 (742)
+.++++++.++++++++|++...+..++.... ..|..+++...+.++.+-
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 34677888888888888877665555543322 356667777777776653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.05 E-value=3e-05 Score=76.74 Aligned_cols=111 Identities=6% Similarity=-0.139 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHH
Q 044169 521 TNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFA 598 (742)
Q Consensus 521 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~ 598 (742)
+...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|++.+++.. ..| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456677777788888888888888887653 22356677778888888888888888887743 344 4667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044169 599 ACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNM 633 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 633 (742)
++...|++++|...++++++++|+++..+...++.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHH
Confidence 88888888888888888888877665444433333
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.05 E-value=4.9e-06 Score=69.93 Aligned_cols=82 Identities=15% Similarity=0.047 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 044169 571 AGKLEIALIFISNLP-I---KP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEE 645 (742)
Q Consensus 571 ~g~~~~A~~~~~~~~-~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 645 (742)
.|++++|+..|++.. . .| +...|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 455555666655543 2 13 244566666667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 044169 646 QRKLMKM 652 (742)
Q Consensus 646 ~~~~m~~ 652 (742)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0009 Score=66.75 Aligned_cols=193 Identities=10% Similarity=0.070 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCC-HHHHHHHH
Q 044169 437 LATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCG--SWEDAERVFSQLT---AADVVSWNSMIKAYSQNGR-ARKAIILF 510 (742)
Q Consensus 437 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~ 510 (742)
++++..+++.+.... +-+..+|+.-.-++.+.| .++++..+++++. ..|..+|+--...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456666777666654 456667776666666666 4788888888776 4566678777777777777 58888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc-----
Q 044169 511 EKMVVEGIRPTNSTFLAVLSACSHS--------------GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA----- 571 (742)
Q Consensus 511 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~----- 571 (742)
+++.+.. +-|...|+.....+.+. +.++++++.+...... .+-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 8888752 33445555554444333 4578888888887652 334555666555555544
Q ss_pred ------CCHHHHHHHHHhCC-CCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 572 ------GKLEIALIFISNLP-IKPTAPIWRPLFAAC-----RCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 572 ------g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
+.++++++.++++. ..||. .|..+..+. ...+..++....+.++++++|.....|..+...+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 45788888888764 55654 454332222 2357788999999999999997777776665443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.03 E-value=3.4e-05 Score=78.55 Aligned_cols=127 Identities=10% Similarity=0.027 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 044169 488 VSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT----------------NSTFLAVLSACSHSGLVQDGQKVFESMVKE 551 (742)
Q Consensus 488 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 551 (742)
..|..+...|.+.|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..++++++.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35556666666677777777777766663 333 256777777777777777777777777652
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 044169 552 YGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMA-EFISKQILE 618 (742)
Q Consensus 552 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 618 (742)
.+.+...|..+..+|...|++++|+..|++.. ..| +...+..+...+...|+.+++ ...+++++.
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23355667777777888888888887777653 333 566777777777777777777 345555544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.03 E-value=5.2e-05 Score=64.47 Aligned_cols=106 Identities=7% Similarity=-0.081 Sum_probs=56.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCC----HHHHHHHHH
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-----IKPT----APIWRPLFA 598 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~ 598 (742)
+...+...|++++|...|+...+. .+.+...+..+..+|...|++++|...+++.. ..++ ..++..+..
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 333344444444444444444331 12233334444444444444444444444332 0112 456667777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 044169 599 ACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAE 636 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 636 (742)
.+...|++++|...++++++..| ++.....+..++..
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 77788888888888888888877 56666666655443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.2e-05 Score=67.01 Aligned_cols=108 Identities=14% Similarity=0.059 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-CCCcHHHHHHHHH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYG-ILPEEAHYSCMVD 566 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~~p~~~~~~~l~~ 566 (742)
.+..+...+.+.|++++|+..|++.++. .|+ ...|..+..+|...|++++|++.+++.++... ..++ +..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~-- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD---YKLI-- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC---HHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh---hHHH--
Confidence 4555566666666666666666666653 343 34455555566666666666666655543110 0000 0000
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 044169 567 LLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVY 627 (742)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 627 (742)
..+|..+..++...|++++|++.++++++..| ++...
T Consensus 83 -----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~ 119 (127)
T 4gcn_A 83 -----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELV 119 (127)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHH
T ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHH
Confidence 12445555666677777777777777777666 44433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.01 E-value=8.3e-05 Score=78.76 Aligned_cols=162 Identities=10% Similarity=-0.118 Sum_probs=107.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCCc-HHH
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEG-IRPTNS----TFLAVLSACSHSGLVQDGQKVFESMVKE---YGILPE-EAH 560 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~ 560 (742)
+..|...|...|++++|.+.+.++...- -.++.. ..+.+-..+...|+++++.++++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5667778888888888888887765421 112221 2233333445667888888887776432 122222 446
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC----ch
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP-------IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELD---PDD----AA 625 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 625 (742)
+..++..|...|++++|..++++.. .++. ..++..++..|...|++++|...+++++... +++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 7778888888888888888876542 1222 4567777788888899999988888887652 222 24
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 626 VYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 626 ~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
.+..++..+...|++++|.+.+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56677788888888888887776654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.7e-05 Score=67.58 Aligned_cols=92 Identities=16% Similarity=0.058 Sum_probs=57.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCchh
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP----IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELDP------DDAAV 626 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~ 626 (742)
+..+...+...|++++|.+.+++.. ..++ ...+..+...+...|++++|...++++++..+ .....
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 3444444555555555554444321 0111 33455566667777777777777777766421 12456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 627 YVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 627 ~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
+..++.+|...|++++|.+.+++..+
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 88899999999999999998887654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=2.8e-05 Score=65.70 Aligned_cols=96 Identities=11% Similarity=0.080 Sum_probs=56.3
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcC
Q 044169 527 AVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHS 604 (742)
Q Consensus 527 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g 604 (742)
.+...+.+.|++++|+..|+...+. -+.+...|..+..++.+.|++++|+..+++.. ..| +...|..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3444555566666666666665542 22344555566666666666666666666543 233 4666777777777778
Q ss_pred CHHHHHHHHHHHHhcCCCCc
Q 044169 605 DLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 605 ~~~~a~~~~~~~~~~~p~~~ 624 (742)
++++|...++++++.+|+++
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888777543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00011 Score=62.38 Aligned_cols=105 Identities=15% Similarity=0.042 Sum_probs=62.3
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHH
Q 044169 529 LSACSHSGLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT----APIWRPLFAACRC 602 (742)
Q Consensus 529 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~ 602 (742)
...+...|++++|...|+.+.+...-.+. ...+..+..++.+.|++++|++.+++.. ..|+ ...+..+..++..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 33444555566666655555442111110 1345555666666666666666665542 2222 4556677777888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044169 603 HSDLKMAEFISKQILELDPDDAAVYVTLSNM 633 (742)
Q Consensus 603 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 633 (742)
.|++++|...++++++..|+++........+
T Consensus 89 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp TTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 8888888888888888888776655544433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00011 Score=68.18 Aligned_cols=94 Identities=12% Similarity=0.012 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-C----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNLP-IKP-T----------------APIWRPLFAACRCHSDLKMAEFISKQILELDP 621 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 621 (742)
.+..+...+.+.|++++|++.|++.. ..| + ...|..+..++...|++++|+..++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 45556666667777777777666542 111 1 26788888899999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 622 DDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 622 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
+++.++..++.+|...|++++|.+.+++..+.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988754
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.8e-05 Score=69.61 Aligned_cols=78 Identities=19% Similarity=0.005 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-hhHHHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDA-AVYVTLSNMY 634 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~y 634 (742)
...|..+..+|.+.|++++|+..+++.. ..| +...|..+..++...|++++|...++++++++|+++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4567888889999999999998888754 334 688899999999999999999999999999999887 5555555444
Q ss_pred H
Q 044169 635 A 635 (742)
Q Consensus 635 ~ 635 (742)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.95 E-value=3.2e-05 Score=63.68 Aligned_cols=94 Identities=13% Similarity=0.020 Sum_probs=44.7
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHHc
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP---TAPIWRPLFAACRCH 603 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~ 603 (742)
+...+...|++++|...+++..+. .+.+...+..+..++...|++++|++.+++.. ..| +...|..+...+...
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 333444444444444444444331 11223344444444455555555554444432 112 345555555556666
Q ss_pred -CCHHHHHHHHHHHHhcCCCC
Q 044169 604 -SDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 604 -g~~~~a~~~~~~~~~~~p~~ 623 (742)
|++++|.+.++++++..|.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 90 EGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp SSCSHHHHHHHHHHGGGCCCC
T ss_pred hCCHHHHHHHHHHHhhcccCC
Confidence 66666666666666666543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.92 E-value=5e-05 Score=78.30 Aligned_cols=138 Identities=13% Similarity=0.038 Sum_probs=104.0
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-CcHHHHHHHH
Q 044169 487 VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGIL-PEEAHYSCMV 565 (742)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~l~ 565 (742)
...|..+...+.+.|++++|+..|++.++. .|+.. .....+++. ... .+...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGA----------KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHH----------HHHHHHHHHHHHHH
Confidence 345777778888888888888888887752 11100 000111111 111 2345788889
Q ss_pred HHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 044169 566 DLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 643 (742)
.+|.+.|++++|++.+++.. ..| +...|..+..++...|++++|...++++++++|++..++..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998754 445 5788899999999999999999999999999999999999999999999988887
Q ss_pred HHH
Q 044169 644 EEQ 646 (742)
Q Consensus 644 ~~~ 646 (742)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.88 E-value=2e-05 Score=80.38 Aligned_cols=148 Identities=12% Similarity=-0.009 Sum_probs=79.4
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 487 VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
...|..+...+.+.|++++|+..|++.+.. .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345666777777888888888888887763 555432 233444444433221 136777888
Q ss_pred HHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HhcCCHHHH
Q 044169 567 LLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY-AEAGLQADA 643 (742)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~~~A 643 (742)
+|.+.|++++|+..+++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899988888887753 333 6778888888888899999999999999888888888888888774 445667777
Q ss_pred HHHHHHHHhCC
Q 044169 644 EEQRKLMKMKE 654 (742)
Q Consensus 644 ~~~~~~m~~~~ 654 (742)
.+.++.|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 77777765443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00044 Score=75.42 Aligned_cols=169 Identities=11% Similarity=0.014 Sum_probs=134.6
Q ss_pred CCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcc
Q 044169 470 GSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGR----------ARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHS 535 (742)
Q Consensus 470 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 535 (742)
..-++|.+.++++. +.+..+|+.--.++...|+ ++++++.++++.+. .|. ..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 34467788887776 3344577776666666666 89999999999985 454 46787777788888
Q ss_pred C--cHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcC-CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc-------
Q 044169 536 G--LVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAG-KLEIALIFISNLP-IKP-TAPIWRPLFAACRCH------- 603 (742)
Q Consensus 536 g--~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~------- 603 (742)
+ +++++++.++++.+. -+-+...|+.-..++.+.| .++++++.++++. ..| |..+|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 8 779999999999873 3456777888888888889 8999999998875 444 688898888887663
Q ss_pred -------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHH
Q 044169 604 -------SDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQAD 642 (742)
Q Consensus 604 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 642 (742)
+.++++.+.++++++.+|+|..+|..+.+++.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999998655
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.6e-05 Score=66.77 Aligned_cols=93 Identities=13% Similarity=0.063 Sum_probs=64.3
Q ss_pred cCcHHHHHHHHHHhHHhcC--CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHH
Q 044169 535 SGLVQDGQKVFESMVKEYG--ILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAE 610 (742)
Q Consensus 535 ~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~ 610 (742)
.|++++|+..|++..+. + -+.+...+..+..+|.+.|++++|++.|++.. ..| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46667777777776541 1 12234466777778888888888888877653 233 5777888888888999999999
Q ss_pred HHHHHHHhcCCCCchhHH
Q 044169 611 FISKQILELDPDDAAVYV 628 (742)
Q Consensus 611 ~~~~~~~~~~p~~~~~~~ 628 (742)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999888776543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00025 Score=75.05 Aligned_cols=158 Identities=8% Similarity=0.009 Sum_probs=117.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcH
Q 044169 495 KAYSQNGRARKAIILFEKMVVEGIRPT----------------NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEE 558 (742)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 558 (742)
..+.+.|++++|++.|.++.+..-... ...+..+...|...|++++|.+.+..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445667888888888888876421111 0236778899999999999999999887644433333
Q ss_pred H----HHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------C
Q 044169 559 A----HYSCMVDLLGRAGKLEIALIFISNLP-------IKPT-APIWRPLFAACRCHSDLKMAEFISKQILEL------D 620 (742)
Q Consensus 559 ~----~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~ 620 (742)
. +.+.+...+...|++++|.+++++.. ..+. ..++..+...+...|++++|...++++... .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2 34455566778899999998887542 2222 556788888999999999999999998764 2
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 621 PDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 621 p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
|....++..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 33456899999999999999999999988764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.84 E-value=3.6e-05 Score=63.50 Aligned_cols=92 Identities=11% Similarity=-0.068 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------chhHH
Q 044169 557 EEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD------AAVYV 628 (742)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 628 (742)
+...+..+...+.+.|++++|++.+++.. .+.+...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45567778888888899999988888753 33467888899999999999999999999999999988 77888
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 044169 629 TLSNMYAEAGLQADAEEQRK 648 (742)
Q Consensus 629 ~l~~~y~~~g~~~~A~~~~~ 648 (742)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888887777655443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00011 Score=57.80 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 044169 558 EAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYA 635 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 635 (742)
...+..+...+.+.|++++|++.+++.. .+.+...|..+...+...|++++|...++++++.+|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4456677777888888888888887653 23357778888888999999999999999999999999999999988887
Q ss_pred hcC
Q 044169 636 EAG 638 (742)
Q Consensus 636 ~~g 638 (742)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00014 Score=77.45 Aligned_cols=123 Identities=9% Similarity=-0.027 Sum_probs=81.9
Q ss_pred hccCcHHHHHHHHHHhHHhcC--C---CCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC---------CCCC-HHHHHHH
Q 044169 533 SHSGLVQDGQKVFESMVKEYG--I---LPE-EAHYSCMVDLLGRAGKLEIALIFISNLP---------IKPT-APIWRPL 596 (742)
Q Consensus 533 ~~~g~~~~a~~~~~~m~~~~~--~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l 596 (742)
...|++++|+.++++..+... + .|+ ..+++.|+.+|...|++++|..++++.. ..|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345555555555555443211 1 122 2346666666666666666666655432 2333 4457778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh-----cCCCCchh---HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 597 FAACRCHSDLKMAEFISKQILE-----LDPDDAAV---YVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 597 ~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
...|...|++++|+.+++++++ ++|++|.+ ...|..++...|++++|..++.++++...
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888876 46776654 46788889999999999999999987543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.81 E-value=7.1e-05 Score=65.34 Aligned_cols=72 Identities=11% Similarity=-0.006 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-C-------CCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNLP-I-------KPT-APIW----RPLFAACRCHSDLKMAEFISKQILELDPDDAAV 626 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 626 (742)
.|..+..++.+.|++++|+..+++.. . .|+ ...| .....++...|++++|+..|+++++++|+|...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 56666666666666666666655432 3 675 5678 899999999999999999999999999988775
Q ss_pred HHHHH
Q 044169 627 YVTLS 631 (742)
Q Consensus 627 ~~~l~ 631 (742)
+..+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 54443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.80 E-value=7.4e-05 Score=66.23 Aligned_cols=131 Identities=11% Similarity=0.047 Sum_probs=67.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc----HHH
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEGI-RPTN----STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE----EAH 560 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~ 560 (742)
+..+...|...|++++|+..+++..+... .++. .++..+...+...|++++|.+.+++..+...-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 33444444455555555555544433200 0111 23444555555556666666555554432111111 234
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP----IKPT----APIWRPLFAACRCHSDLKMAEFISKQILELD 620 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 620 (742)
+..+..++...|++++|.+.+++.. ..++ ...+..+...+...|++++|...+++++++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5556666666666666666655432 0111 3345566667778888888888888777653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00011 Score=59.42 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 588 PTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 588 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
.+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36778899999999999999999999999999999999999999999999999999999988765
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.77 E-value=5.2e-05 Score=77.25 Aligned_cols=152 Identities=11% Similarity=0.015 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 044169 456 VHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHS 535 (742)
Q Consensus 456 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 535 (742)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34577788889999999999999998652222111 1222333444333221 13677788888899
Q ss_pred CcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHH-HHHcCCHHHHHHH
Q 044169 536 GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAA-CRCHSDLKMAEFI 612 (742)
Q Consensus 536 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~-~~~~g~~~~a~~~ 612 (742)
|++++|+..++..++. .+.+...|..+..+|...|++++|+..|++.. ..|+ ...+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988763 23456788889999999999999999998875 4554 4455555554 3445677888899
Q ss_pred HHHHHhcCCCCc
Q 044169 613 SKQILELDPDDA 624 (742)
Q Consensus 613 ~~~~~~~~p~~~ 624 (742)
+.++++..|+++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999988654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00025 Score=73.00 Aligned_cols=113 Identities=12% Similarity=-0.007 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 044169 523 STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKP-TAPIWRPLFAACR 601 (742)
Q Consensus 523 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 601 (742)
..+..+...+.+.|++++|++.|++..+.. ++. ......+++.+ ..| +...|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGAK------LQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHHH------HHHHHHHHHHHHHHHHH
Confidence 346666667777777777777777765411 000 00011111111 122 4677888999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 602 CHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999987643
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0001 Score=61.33 Aligned_cols=77 Identities=13% Similarity=0.050 Sum_probs=63.0
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 577 ALIFISNL-PIKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 577 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
|++.|++. ...| +...|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555543 2233 57788888888999999999999999999999999999999999999999999999999887653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00042 Score=73.81 Aligned_cols=65 Identities=9% Similarity=-0.080 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 590 APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...|++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 57788899999999999999999999999999999999999999999999999999999988654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00014 Score=77.93 Aligned_cols=115 Identities=13% Similarity=0.099 Sum_probs=65.7
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHH
Q 044169 464 EAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQ 539 (742)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 539 (742)
..|.+.|++++|.+.|++.. +.+...|..+..+|.+.|++++|+..+++..+. .|+ ...+..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 34556677777777776654 334556666677777777777777777776663 343 355666666666777777
Q ss_pred HHHHHHHHhHHhcCCCCcHHHHHHHHHH--HhhcCCHHHHHHHHH
Q 044169 540 DGQKVFESMVKEYGILPEEAHYSCMVDL--LGRAGKLEIALIFIS 582 (742)
Q Consensus 540 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 582 (742)
+|.+.|++..+...- +...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777666553211 22233333333 666666666666665
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=4.6e-05 Score=66.38 Aligned_cols=84 Identities=14% Similarity=-0.047 Sum_probs=61.8
Q ss_pred cCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcC
Q 044169 571 AGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSD----------LKMAEFISKQILELDPDDAAVYVTLSNMYAEAG 638 (742)
Q Consensus 571 ~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 638 (742)
.+.+++|++.+++.. ..| +...|..+..++...++ +++|+..++++++++|++..+|..++.+|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 344555555555432 222 45555555555554443 569999999999999999999999999999885
Q ss_pred -----------CHHHHHHHHHHHHhCC
Q 044169 639 -----------LQADAEEQRKLMKMKE 654 (742)
Q Consensus 639 -----------~~~~A~~~~~~m~~~~ 654 (742)
++++|.+.|++..+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 8999999999988754
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0012 Score=56.95 Aligned_cols=111 Identities=9% Similarity=-0.077 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 044169 537 LVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRC----HSDLKMAEFI 612 (742)
Q Consensus 537 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 612 (742)
++++|.+.|++..+ .+ .|+.. |..+|...+.+++|++.|++.....++..+..|...|.. .+|.++|...
T Consensus 10 d~~~A~~~~~~aa~-~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACE-LN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHH-TT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 44555555555543 22 12221 555555555555566666554333455666666666665 5677777777
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 044169 613 SKQILELDPDDAAVYVTLSNMYAE----AGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 613 ~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~~~ 655 (742)
++++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777766 367777778888877 7788888888877776653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00059 Score=53.96 Aligned_cols=70 Identities=14% Similarity=0.020 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044169 587 KPTAPIWRPLFAACRCHSD---LKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEIS 656 (742)
Q Consensus 587 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 656 (742)
++|+..+..+..++...++ .++|..+++++++++|+++.+...++..+.+.|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3467778888888655544 799999999999999999999999999999999999999999999987653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.002 Score=70.19 Aligned_cols=150 Identities=10% Similarity=0.015 Sum_probs=123.0
Q ss_pred HcC-CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCc----------HHHHHHHHHHhHHhcCCCCcHHHHHHHHH
Q 044169 499 QNG-RARKAIILFEKMVVEGIRPTNS-TFLAVLSACSHSGL----------VQDGQKVFESMVKEYGILPEEAHYSCMVD 566 (742)
Q Consensus 499 ~~g-~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 566 (742)
+.| ..++|++.++++.+ +.|+.. .|+.--.++...|+ ++++++.++.+.+ .-+.+...|..-.-
T Consensus 40 ~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w 115 (567)
T 1dce_A 40 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCW 115 (567)
T ss_dssp HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 344 45788999999998 477764 46665566666666 9999999999987 33456778888888
Q ss_pred HHhhcC--CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc----
Q 044169 567 LLGRAG--KLEIALIFISNLP--IKPTAPIWRPLFAACRCHS-DLKMAEFISKQILELDPDDAAVYVTLSNMYAEA---- 637 (742)
Q Consensus 567 ~~~~~g--~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~---- 637 (742)
++.+.| ++++|+++++++. ...+..+|+.-.....+.| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 888999 7799999999875 4457889999999999999 899999999999999999999999999998885
Q ss_pred ----------CCHHHHHHHHHHHHh
Q 044169 638 ----------GLQADAEEQRKLMKM 652 (742)
Q Consensus 638 ----------g~~~~A~~~~~~m~~ 652 (742)
++++++.+.++....
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHh
Confidence 567888888877754
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00057 Score=56.00 Aligned_cols=66 Identities=9% Similarity=-0.059 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 589 TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+...|..+...+...|++++|...++++++.+|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788888999999999999999999999999999999999999999999999999999988654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00072 Score=71.92 Aligned_cols=117 Identities=8% Similarity=-0.061 Sum_probs=87.0
Q ss_pred HHHhhcCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCc---hhH
Q 044169 566 DLLGRAGKLEIALIFISNLP---------IKPT-APIWRPLFAACRCHSDLKMAEFISKQILEL-----DPDDA---AVY 627 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~ 627 (742)
..+...|++++|+.++++.. ..|+ ..+++.|...|...|++++|+.+++++++. .|++| .++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34567899999998886542 2333 456888999999999999999999999873 56554 468
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHc
Q 044169 628 VTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDI 700 (742)
Q Consensus 628 ~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~ 700 (742)
+.|+.+|..+|++++|..++++..+--.. .- -..||...++.+.+.+...+++..
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~l-----------------G~~Hp~~~~~~~~l~~~~~e~~~~ 451 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLV-TH-----------------GPSHPITKDLEAMRMQTEMELRMF 451 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HT-----------------CTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH-Hh-----------------CCCChHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999887642110 00 126888888777776666665543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00041 Score=60.37 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=43.5
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHH
Q 044169 575 EIALIFISNLP-IKP-TAPIWRPLFAACRCH-----------SDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQA 641 (742)
Q Consensus 575 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 641 (742)
++|+..|++.. ..| +..+|..+..+|... |++++|++.|+++++++|++......+- ..+
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ 135 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTA 135 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHH
Confidence 35555555432 333 355566666666554 5899999999999999997754333221 234
Q ss_pred HHHHHHHHHHhCC
Q 044169 642 DAEEQRKLMKMKE 654 (742)
Q Consensus 642 ~A~~~~~~m~~~~ 654 (742)
+|-++.-.+...+
T Consensus 136 ka~el~~~~~~~~ 148 (158)
T 1zu2_A 136 KAPQLHAEAYKQG 148 (158)
T ss_dssp THHHHHHHHHHSS
T ss_pred hCHhccCcccccc
Confidence 4555554444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0013 Score=54.40 Aligned_cols=80 Identities=11% Similarity=-0.005 Sum_probs=52.3
Q ss_pred HHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044169 541 GQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-I-KPTAPIWRPLFAACRCHSDLKMAEFISKQILE 618 (742)
Q Consensus 541 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 618 (742)
|++.|++..+ ..+.+...+..+..+|.+.|++++|++.+++.. . +.+...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555543 222345566667777777777777777776643 2 33466777777778888888888888888887
Q ss_pred cCCC
Q 044169 619 LDPD 622 (742)
Q Consensus 619 ~~p~ 622 (742)
+.|+
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7663
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0044 Score=53.31 Aligned_cols=112 Identities=12% Similarity=-0.090 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh----cCCHHH
Q 044169 501 GRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR----AGKLEI 576 (742)
Q Consensus 501 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 576 (742)
+++++|++.|++..+.| .|+.. +...|...+.+++|.+.|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 47889999999999887 44444 667777778889999999998763 466777888888888 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 044169 577 ALIFISNLPIKPTAPIWRPLFAACRC----HSDLKMAEFISKQILELDP 621 (742)
Q Consensus 577 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 621 (742)
|++.|++.....++..+..|...|.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999987655688888889888888 8999999999999999853
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0013 Score=68.83 Aligned_cols=91 Identities=14% Similarity=0.114 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcc
Q 044169 590 APIWRPLFAACRCHSDLKMAEFISKQILEL-----DPDDA---AVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGC 661 (742)
Q Consensus 590 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~ 661 (742)
..+++.+...|...|++++|+.+++++++. .|++| ..++.|+.+|...|++++|..++++..+--. ..-
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~l-- 405 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR-VTH-- 405 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHT--
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-Hhc--
Confidence 345666777777777777777777777652 44444 4688899999999999999998888764110 000
Q ss_pred cEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 044169 662 SWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIE 698 (742)
Q Consensus 662 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 698 (742)
-..||...+++..+.+...+|+
T Consensus 406 ---------------G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 406 ---------------GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp ---------------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCChHHHHHHHHHHHHHHHHh
Confidence 1268888888888877777765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0013 Score=51.42 Aligned_cols=66 Identities=27% Similarity=0.288 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 589 TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+...|..+...+...|++++|...++++++..|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356778888889999999999999999999999999999999999999999999999999887643
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.022 Score=57.00 Aligned_cols=47 Identities=13% Similarity=0.022 Sum_probs=29.7
Q ss_pred CCCchHHHHHHHHHH--HcC---CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 044169 484 AADVVSWNSMIKAYS--QNG---RARKAIILFEKMVVEGIRPTN-STFLAVLSAC 532 (742)
Q Consensus 484 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 532 (742)
..+...|...+.+.. ..+ +..+|+.+|++.++ ..|+. ..+..+..++
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 446677777776543 333 34789999999988 47875 4454444444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0013 Score=68.68 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 591 PIWRPLFAACRCHSDLKMAEFISKQILE-----LDPDDA---AVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
.+++.|..+|...|++++|+.+++++++ +.|++| .+++.|+.+|..+|++++|..++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4566677777777777777777777765 244444 4688899999999999999998888764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0055 Score=48.81 Aligned_cols=78 Identities=21% Similarity=0.181 Sum_probs=57.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 044169 564 MVDLLGRAGKLEIALIFISNLP-IKP-TAP-IWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQ 640 (742)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 640 (742)
.+..+.+.|++++|++.+++.. ..| +.. .|..+..++...|++++|...++++++++|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 4556777888888888887753 334 566 78888888899999999999999999999988876632 445
Q ss_pred HHHHHHHHH
Q 044169 641 ADAEEQRKL 649 (742)
Q Consensus 641 ~~A~~~~~~ 649 (742)
.++...+++
T Consensus 78 ~~a~~~~~~ 86 (99)
T 2kc7_A 78 MDILNFYNK 86 (99)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 555555543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0036 Score=49.90 Aligned_cols=59 Identities=15% Similarity=0.132 Sum_probs=54.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 596 LFAACRCHSDLKMAEFISKQILELDPDDAA-VYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 596 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445678899999999999999999999999 99999999999999999999999988654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0047 Score=49.53 Aligned_cols=63 Identities=16% Similarity=0.265 Sum_probs=37.0
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 044169 486 DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVK 550 (742)
Q Consensus 486 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 550 (742)
+...|..+...|...|++++|+..|++..+. .|+ ...|..+..++...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555666666666666666666666653 333 34555566666666666666666665543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0076 Score=62.90 Aligned_cols=69 Identities=13% Similarity=0.011 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNLP---------IKPT-APIWRPLFAACRCHSDLKMAEFISKQILE-----LDPDDA 624 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~ 624 (742)
+++.|..+|...|++++|+.++++.. ..|+ ..+++.|...|...|++++|+.+++++++ ++|++|
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 45566666666666666666555432 2333 34577777788888888888888888776 467777
Q ss_pred hhHH
Q 044169 625 AVYV 628 (742)
Q Consensus 625 ~~~~ 628 (742)
.+-.
T Consensus 422 ~~~~ 425 (433)
T 3qww_A 422 YISE 425 (433)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.014 Score=60.97 Aligned_cols=71 Identities=13% Similarity=0.030 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNLP---------IKPT-APIWRPLFAACRCHSDLKMAEFISKQILE-----LDPDDA 624 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~ 624 (742)
+++.|+.+|...|++++|+.++++.. ..|+ ..+++.|...|...|++++|+.+++++++ ++|++|
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 45555555555555555555554331 2333 34567777778888888888888887776 477777
Q ss_pred hhHHHH
Q 044169 625 AVYVTL 630 (742)
Q Consensus 625 ~~~~~l 630 (742)
.+-..+
T Consensus 411 ~~~~~~ 416 (429)
T 3qwp_A 411 LIEDLI 416 (429)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.19 Score=41.32 Aligned_cols=141 Identities=12% Similarity=0.057 Sum_probs=100.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHH
Q 044169 497 YSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEI 576 (742)
Q Consensus 497 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 576 (742)
+.-.|..++..++..+... ..+..-++.++--....-+-+-..++++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 3456788888888888776 334455666665555556666667777766432221 24555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044169 577 ALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEIS 656 (742)
Q Consensus 577 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 656 (742)
....+-.+. .+.......+.....+|..++-.+++..++..+|-++.....++.+|.+.|+..+|.+++++.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555555543 244556667778888999999999999976666558999999999999999999999999999999974
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.019 Score=49.29 Aligned_cols=63 Identities=6% Similarity=-0.092 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 589 TAPIWRPLFAACRCHS---DLKMAEFISKQILELD-P-DDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 589 ~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
+..+.-.+..++.+.+ +.++++.+++.+++.+ | ++...+..|+-+|.+.|++++|.++++.+.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333333444444433 3334444444444444 3 233444444444444444444444444444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.046 Score=54.70 Aligned_cols=134 Identities=12% Similarity=0.077 Sum_probs=92.1
Q ss_pred CCCCHHHHHHHHHHHh--c---cCcHHHHHHHHHHhHHhcCCCCcH-HHHHHHHHHHh---hcC-----C---HHHHHHH
Q 044169 518 IRPTNSTFLAVLSACS--H---SGLVQDGQKVFESMVKEYGILPEE-AHYSCMVDLLG---RAG-----K---LEIALIF 580 (742)
Q Consensus 518 ~~p~~~t~~~ll~a~~--~---~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~---~~g-----~---~~~A~~~ 580 (742)
.+.+...|...+++.. . .....+|+.+|++.++ ..|+. ..|..+.-+|. ..+ . +..|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3455566777776543 2 2346889999999975 34653 34443333332 111 1 1223332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 581 ISNLP-IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 581 ~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
...+. .+.++.++..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.+++......
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 22333 345688888887778888999999999999999998 678889999999999999999999988876543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.14 Score=58.67 Aligned_cols=100 Identities=16% Similarity=0.163 Sum_probs=60.2
Q ss_pred HHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHH
Q 044169 364 YSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQI 443 (742)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i 443 (742)
....|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++
T Consensus 662 ~l~~~~~~~A~~~~~~~---~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE---SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHTCHHHHHHHHTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh---CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 34567777777776654 3556788888888888888888888877643 22334444445666655555
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 044169 444 HSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQ 481 (742)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 481 (742)
-+.....| -++....+|.+.|++++|.+++.+
T Consensus 730 ~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 730 AKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444433 123334445666777777665543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0023 Score=65.13 Aligned_cols=210 Identities=11% Similarity=0.087 Sum_probs=145.3
Q ss_pred ccccHHHHHcccccccccccccCCCcchHHHHHHHhhhcCCCCCCCccccccccCCChhhHHHHHHhhccccchHHHHHH
Q 044169 60 GLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSNTVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRY 139 (742)
Q Consensus 60 ~~~~~~~l~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 139 (742)
...|+ .+..+. ...+...+|++.|-+. -|+..|..++.++.+.|.++.-...
T Consensus 54 p~VWs-~LgkAq--------L~~~~v~eAIdsyIkA-------------------~Dps~y~eVi~~A~~~~~~edLv~y 105 (624)
T 3lvg_A 54 PAVWS-QLAKAQ--------LQKGMVKEAIDSYIKA-------------------DDPSSYMEVVQAANTSGNWEELVKY 105 (624)
T ss_dssp CCCSS-SHHHHT--------TTSSSCTTTTTSSCCC-------------------SCCCSSSHHHHHTTTSSCCTTHHHH
T ss_pred ccHHH-HHHHHH--------HccCchHHHHHHHHhC-------------------CChHHHHHHHHHHHhCCCHHHHHHH
Confidence 34799 999999 8889999998876553 3667789999999999999988888
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCC------
Q 044169 140 HALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGID------ 213 (742)
Q Consensus 140 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------ 213 (742)
+....+. ..++.+-+.|+-+|++.|++.+-++.+ ..+|+.--..+.+-|...|.++.|.-+|..+....
T Consensus 106 L~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstL 180 (624)
T 3lvg_A 106 LQMARKK--ARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTL 180 (624)
T ss_dssp HHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSS
T ss_pred HHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHH
Confidence 8777665 466677889999999999988765543 34677667777777888888887777776653211
Q ss_pred --------------CCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcc
Q 044169 214 --------------VQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGL 279 (742)
Q Consensus 214 --------------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 279 (742)
-.-+..||..+-.+|...+.+..|...--.++-. +| -...|+..|-+.|.+++-+.+++.-
T Consensus 181 V~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 181 VHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp SSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1235677888888888777776664443333211 11 1234566677778877777777654
Q ss_pred C---CCCcchHHHHHHHHHhCCCcchHHHHHH
Q 044169 280 V---QRNVISWTAIINGFKQHGDYEKPLRLVC 308 (742)
Q Consensus 280 ~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 308 (742)
. +.....|+-|.-.|++- ++++..+.++
T Consensus 256 lglErAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 256 LGLERAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp TTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred hCCCchhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 3 24556677777777665 4555444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.025 Score=54.15 Aligned_cols=87 Identities=10% Similarity=0.136 Sum_probs=71.1
Q ss_pred HHHHHHHHHhCC-CCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHhc-CCHHH
Q 044169 574 LEIALIFISNLP-IKPT---APIWRPLFAACRC-----HSDLKMAEFISKQILELDPDD-AAVYVTLSNMYAEA-GLQAD 642 (742)
Q Consensus 574 ~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~-g~~~~ 642 (742)
..+|...+++.. ..|+ ...|..+...|.+ .|+.++|++.|+++++++|+. ..++..+++.|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 456666666543 5665 5578888888888 599999999999999999974 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCCCCCc
Q 044169 643 AEEQRKLMKMKEISKEPG 660 (742)
Q Consensus 643 A~~~~~~m~~~~~~~~~~ 660 (742)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999887765454
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.069 Score=61.28 Aligned_cols=150 Identities=13% Similarity=0.080 Sum_probs=77.4
Q ss_pred hcCCHHHHHH-HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 044169 468 KCGSWEDAER-VFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFE 546 (742)
Q Consensus 468 ~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 546 (742)
..+++++|.+ ++..++ +......++..+.+.|..++|+++.+.-. .- .......|++++|.++.+
T Consensus 611 ~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~--------~~----f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQD--------QK----FELALKVGQLTLARDLLT 676 (814)
T ss_dssp HTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCHH--------HH----HHHHHHHTCHHHHHHHHT
T ss_pred HhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCcc--------hh----eehhhhcCCHHHHHHHHH
Confidence 4567777766 443332 01122555666666777777766543111 11 122344677777777643
Q ss_pred HhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 044169 547 SMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAV 626 (742)
Q Consensus 547 ~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 626 (742)
.+ .+...|..+.+.+.+.|+++.|.+.|.++. | |..+...+...|+.+...++.+.+...+.
T Consensus 677 ~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~---d---~~~l~~l~~~~~~~~~~~~~~~~a~~~~~----- 738 (814)
T 3mkq_A 677 DE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH---D---LESLFLLHSSFNNKEGLVTLAKDAETTGK----- 738 (814)
T ss_dssp TC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---C---HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----
T ss_pred hh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc---C---hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-----
Confidence 33 355677777777777777777777777665 1 22333334445555544444443333221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 044169 627 YVTLSNMYAEAGLQADAEEQRKL 649 (742)
Q Consensus 627 ~~~l~~~y~~~g~~~~A~~~~~~ 649 (742)
+.....+|.+.|++++|.+++..
T Consensus 739 ~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHH
Confidence 12222334445555555555443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.053 Score=43.63 Aligned_cols=70 Identities=17% Similarity=0.160 Sum_probs=48.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 044169 562 SCMVDLLGRAGKLEIALIFISNLP---------IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLS 631 (742)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 631 (742)
..|...+.+.|+++.|...|+... ..+...++..|..++.+.|+++.|...++++++++|+++.+...+.
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 344455555555555555544321 1234667888889999999999999999999999999887765554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.096 Score=41.00 Aligned_cols=69 Identities=7% Similarity=-0.010 Sum_probs=53.4
Q ss_pred CCcHHHHHHHHHHHhhcCC---HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 044169 555 LPEEAHYSCMVDLLGRAGK---LEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDD 623 (742)
Q Consensus 555 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 623 (742)
+.+...+..+..++...++ .++|..++++.. ..| ++..+..+...+.+.|++++|+..++++++.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4566777777777765544 688888888764 344 57777778888999999999999999999999873
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.02 Score=58.54 Aligned_cols=238 Identities=8% Similarity=0.072 Sum_probs=151.5
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHcc
Q 044169 151 DQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICGS 230 (742)
Q Consensus 151 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 230 (742)
.+.+|+.|..++.+.|++.+|.+-| +...|...|..+|.+..+.|.+++-+..+.-.++..- ++..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 4456777777777777777776655 3345666777777777777877777777766655422 33333467777777
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccC------------------------CCCcch
Q 044169 231 LSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLV------------------------QRNVIS 286 (742)
Q Consensus 231 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~ 286 (742)
.+++.+-++++ -.|+..-...+.+-|...|.++.|.-+|..+. ..++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 77665543333 13454445566666677777777777766552 147889
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCC-CchHHHHHHHHHHH
Q 044169 287 WTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMA-LGDFVGTAIVDMYS 365 (742)
Q Consensus 287 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~~ 365 (742)
|-.+-.+|...+.+.-|.-.--.+.-. || -+..++.-|-..|.+++-..+++.-. |++ ....+++-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHH
Confidence 999999999999988876554444321 22 12234556777888888777776654 332 35677888888888
Q ss_pred hCCCHHHHHHHHHh----cCCC------CChhhHHHHHHHHHhCCCcHHHHH
Q 044169 366 GLGEIWEAKKQLKE----MGKS------ASSVSWNAQIAGFFRNQKTEEAIE 407 (742)
Q Consensus 366 ~~g~~~~A~~~~~~----~~~~------~~~~~~~~li~~~~~~g~~~~A~~ 407 (742)
+- +.++..+.++. +.++ .....|.-++-.|++-.+++.|..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 86 33333333332 2311 134568888888888888887653
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.17 E-value=1.1 Score=39.36 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=64.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 044169 464 EAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQK 543 (742)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 543 (742)
+....+|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ |..+.-.|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445678888888777765 3566788888888888888888888776543 2333334444566555444
Q ss_pred HHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044169 544 VFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP 585 (742)
Q Consensus 544 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (742)
+-+.... .| -++.-...+.-.|+++++++++.+..
T Consensus 82 la~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 4333322 11 13334455666778888877777654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.1 Score=44.69 Aligned_cols=88 Identities=13% Similarity=0.041 Sum_probs=55.0
Q ss_pred HHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcC---CHHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHHcCCHHHHHH
Q 044169 539 QDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAG---KLEIALIFISNLP-IK-P--TAPIWRPLFAACRCHSDLKMAEF 611 (742)
Q Consensus 539 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~g~~~~a~~ 611 (742)
..+.+-|.+..+. + .++..+...+.-++.+.+ +.++++.++++.. .. | +...+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3444444444331 2 245555555556666655 4446666665543 12 3 24456667777899999999999
Q ss_pred HHHHHHhcCCCCchhHH
Q 044169 612 ISKQILELDPDDAAVYV 628 (742)
Q Consensus 612 ~~~~~~~~~p~~~~~~~ 628 (742)
.++.+++.+|++..+..
T Consensus 93 y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHhcCCCCHHHHH
Confidence 99999999998765444
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=6.3 Score=42.75 Aligned_cols=114 Identities=10% Similarity=-0.003 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHH
Q 044169 501 GRARKAIILFEKMVVEGIRPTNST----FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEI 576 (742)
Q Consensus 501 g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 576 (742)
.+.+.|...+....+.+ ..+... ...+.......+...++...+..... . .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM--R-SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH--T-CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc--c-CCChHHHHHHHHHHHHCCCHHH
Confidence 37788888888776543 223322 22333334444534455555555432 1 2333333334444457788888
Q ss_pred HHHHHHhCCCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 044169 577 ALIFISNLPIKP-T-APIWRPLFAACRCHSDLKMAEFISKQILE 618 (742)
Q Consensus 577 A~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 618 (742)
|...|+.|...+ + ....-=+..+....|+.++|...++.+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888886332 2 22222233456677888888888888765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.37 E-value=0.28 Score=40.38 Aligned_cols=91 Identities=13% Similarity=0.020 Sum_probs=47.9
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHHcCC
Q 044169 533 SHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEI---ALIFISNLPIK--P--TAPIWRPLFAACRCHSD 605 (742)
Q Consensus 533 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~ 605 (742)
.....+..+.+-+...... +. ++..+--.+.-++.+.....+ ++.++++.... | .....-.|.-++.+.|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence 3334445555555554332 22 555555556666666665544 66666654311 2 12223334445666666
Q ss_pred HHHHHHHHHHHHhcCCCCch
Q 044169 606 LKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~p~~~~ 625 (742)
+++|.+.++.+++.+|+|..
T Consensus 90 Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhCCCCHH
Confidence 66666666666666665544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.06 E-value=1.7 Score=38.26 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=20.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 044169 499 QNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESM 548 (742)
Q Consensus 499 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 548 (742)
+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|...
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444332 23344444444444444444444444443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.27 Score=54.50 Aligned_cols=55 Identities=16% Similarity=0.004 Sum_probs=50.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044169 597 FAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 597 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 651 (742)
...|...|+++.|.++.++++..-|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3447788999999999999999999999999999999999999999999999884
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.74 E-value=0.29 Score=39.11 Aligned_cols=65 Identities=22% Similarity=-0.003 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 589 TAPIWRPLFAACRCHSDLKMAEFISKQILELD-------PDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
+....-.+...+...|+++.|...++.+++.. +..+.++..|+.+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445677888999999999999999998852 235678999999999999999999999988763
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.50 E-value=4 Score=34.22 Aligned_cols=65 Identities=11% Similarity=-0.095 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 588 PTAPIWRPLFAACRCHSD---LKMAEFISKQILELDPD-DAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 588 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
|+..+--.+..++.+..+ ..+++.+++.+....|. .......|+-++.+.|+|++|+++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 333333334444443332 33455555555555552 333445555556666666666666555554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.27 E-value=2.8 Score=34.47 Aligned_cols=88 Identities=16% Similarity=0.075 Sum_probs=56.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH---HHHHHHHhHHhcCCCC--cHHHHHHHHHHHhhcCC
Q 044169 499 QNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQD---GQKVFESMVKEYGILP--EEAHYSCMVDLLGRAGK 573 (742)
Q Consensus 499 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~~~g~ 573 (742)
.......+.+-|.+....|. |+..+-..+..++.+...... ++.+++.+.+. -.| .....-.|.-++.+.|+
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhh
Confidence 33445556666666655553 666666666777777766554 77888777552 223 33445566778888888
Q ss_pred HHHHHHHHHhCC-CCCC
Q 044169 574 LEIALIFISNLP-IKPT 589 (742)
Q Consensus 574 ~~~A~~~~~~~~-~~p~ 589 (742)
+++|.+.++.+. ..|+
T Consensus 90 Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 888888887754 4554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=91.32 E-value=0.25 Score=47.30 Aligned_cols=75 Identities=12% Similarity=0.184 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCC--cHHHHHHHHHHHhhc-C
Q 044169 504 RKAIILFEKMVVEGIRPT---NSTFLAVLSACSHS-----GLVQDGQKVFESMVKEYGILP--EEAHYSCMVDLLGRA-G 572 (742)
Q Consensus 504 ~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~~~-g 572 (742)
..|...+++.++ +.|+ ...|..+...|.+. |+.++|.+.|++.++- .| +..++..+.+.|++. |
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcC
Confidence 345555555554 3454 23455555545442 5555555555555431 22 133333444444442 4
Q ss_pred CHHHHHHHHHh
Q 044169 573 KLEIALIFISN 583 (742)
Q Consensus 573 ~~~~A~~~~~~ 583 (742)
+.++|.+.+++
T Consensus 255 d~~~a~~~L~k 265 (301)
T 3u64_A 255 NRAGFDEALDR 265 (301)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 44444444443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=91.23 E-value=5.6 Score=32.90 Aligned_cols=84 Identities=7% Similarity=-0.062 Sum_probs=59.6
Q ss_pred hCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHH
Q 044169 366 GLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHS 445 (742)
Q Consensus 366 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~ 445 (742)
.||++......+-.++ .+....+..+..+...|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.
T Consensus 73 ~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 4566666666665553 4455566777778888888888888877544 346777778888888888888888888888
Q ss_pred HHHHhCC
Q 044169 446 RIVKSKF 452 (742)
Q Consensus 446 ~~~~~~~ 452 (742)
++-+.|+
T Consensus 150 ~AC~kG~ 156 (172)
T 1wy6_A 150 EACKKGE 156 (172)
T ss_dssp HHHHTTC
T ss_pred HHHHhhh
Confidence 8777764
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.19 E-value=0.9 Score=38.40 Aligned_cols=58 Identities=9% Similarity=-0.035 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 044169 572 GKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVT 629 (742)
Q Consensus 572 g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 629 (742)
++.++|.++|+.+. .+.=...|......-.++|++..|.+++.+++.+.|.+...+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 56666666666552 11126677777777788999999999999999998866554443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.07 E-value=30 Score=39.29 Aligned_cols=164 Identities=10% Similarity=0.071 Sum_probs=77.2
Q ss_pred HhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHH--HHhcCCHHHHHHHHHhcC-CCCch-HHH---HHHHHHHHcCC
Q 044169 430 ACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEA--YNKCGSWEDAERVFSQLT-AADVV-SWN---SMIKAYSQNGR 502 (742)
Q Consensus 430 ~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~-~~~~~-~~~---~li~~~~~~g~ 502 (742)
.+...|+.+....++..+.+.. +..+...++.+ +.-.|+.+.+..+.+.+. ..+.. -|. ++.-+|+..|+
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC
Confidence 3455666666666666655421 22222223333 334566666666655554 22322 222 23345556667
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCH-HHHHHHH
Q 044169 503 ARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKL-EIALIFI 581 (742)
Q Consensus 503 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~ 581 (742)
.....++++.+.+. ...+......+.-++...|+.+.+.++++.+.+ ...|....-..+.-+....|.. .+|++.+
T Consensus 576 ~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 576 NSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp HHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred HHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 66655677766653 111222222222234344554445555554433 2234444444444444444433 5667777
Q ss_pred HhCCCCCCHHHHHHHHHH
Q 044169 582 SNLPIKPTAPIWRPLFAA 599 (742)
Q Consensus 582 ~~~~~~p~~~~~~~l~~~ 599 (742)
..+...+|..+-..-+.+
T Consensus 653 ~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 653 DPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp HHHHTCSSHHHHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHH
Confidence 766655565544433333
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.82 E-value=1.7 Score=37.54 Aligned_cols=30 Identities=10% Similarity=0.040 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 044169 557 EEAHYSCMVDLLGRAGKLEIALIFISNLPI 586 (742)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (742)
+.+.--.+..+|.+.|+.++|+.+++.++.
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 444444577788888888888888888763
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.27 E-value=2.9 Score=34.57 Aligned_cols=65 Identities=11% Similarity=-0.095 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 588 PTAPIWRPLFAACRCHSD---LKMAEFISKQILELDPD-DAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 588 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
|...+--.+..++.+..+ ..+++.+++.+.+..|. ....+..|+-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444444332 34566666666666553 345566666677777777777777666654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=88.51 E-value=2.7 Score=35.55 Aligned_cols=54 Identities=7% Similarity=-0.097 Sum_probs=45.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 044169 602 CHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 655 (742)
..+|.++|.++|+.++.+...-+..+...+.--.+.|+...|.+++......+.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 347889999999999888655677888888888999999999999999887654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.48 E-value=22 Score=34.55 Aligned_cols=165 Identities=8% Similarity=0.039 Sum_probs=95.9
Q ss_pred HHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHH----HHHHHHCCCCCCHHHHHHHHHHHhcc
Q 044169 257 NALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRL----VCLMREDGIDPNEYTFTVALASCASL 332 (742)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~ 332 (742)
.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.++++|..+...++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 3445557778888888877542 23445666776655553 55556678888888888888777664
Q ss_pred CChh-HHHHHHHHHHH----hCC--CCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhC---CCc
Q 044169 333 RNSH-MGYMFHAQVIK----RGM--ALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRN---QKT 402 (742)
Q Consensus 333 ~~~~-~a~~i~~~~~~----~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 402 (742)
..-+ .-..+...+++ .|- ..++.....+...|.+.|++.+|+..|-.-. ..|...+..++.-+... |..
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCCCCc
Confidence 3222 22344444443 322 2467778888888889999999888776221 22445555555444433 333
Q ss_pred HHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 044169 403 EEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIV 448 (742)
Q Consensus 403 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~ 448 (742)
.++-- ..-..++ -|...++...|..+++...
T Consensus 185 ~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 185 STVAE--------------FFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred chHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 33211 1111222 2345677777777776544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.41 E-value=24 Score=36.52 Aligned_cols=257 Identities=11% Similarity=0.126 Sum_probs=121.5
Q ss_pred CChHHHHHHHHHchh-----CCCCCChhhHHHHHHHHccCCChHHHHHHHHHHHHhCCCCChhH---HHHHHHHHHhCCC
Q 044169 197 ALFDQAFSFFLKLDG-----IDVQPNHYTYSTMLAICGSLSAIDEGKQLHAQTMKLQYLSKTAV---SNALLTMYIKCGM 268 (742)
Q Consensus 197 g~~~~A~~~~~~m~~-----~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~ 268 (742)
|++.+|++.+..+.+ .+..........++..|...++++...+.+..+.+........+ .+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 678888888766653 22344455677788888888988888777666554322221111 1222232222232
Q ss_pred hH--HHHHHHhccCC---CCc-------chHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChh
Q 044169 269 ME--DAESVFEGLVQ---RNV-------ISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSH 336 (742)
Q Consensus 269 ~~--~A~~~~~~~~~---~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 336 (742)
.+ .-..+.+.... .-. .....|...|-..|++.+|.+++..+...-...+....
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~-------------- 175 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE-------------- 175 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH--------------
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH--------------
Confidence 22 22223332211 111 11244566667777777777777776532111111100
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhc-------CCCCC--hhhHHHHHHHHHhCCCcHHHHH
Q 044169 337 MGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEM-------GKSAS--SVSWNAQIAGFFRNQKTEEAIE 407 (742)
Q Consensus 337 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~li~~~~~~g~~~~A~~ 407 (742)
-..++..-+..|...+++..|..++.+. ...|+ ..-+..++..+...+++.+|..
T Consensus 176 ----------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~ 239 (445)
T 4b4t_P 176 ----------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQ 239 (445)
T ss_dssp ----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 0112223344555555555555555443 10111 1234455556666667776666
Q ss_pred HHHHHhHcC-CCCChHHHHH-----HHHHh-cCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CCHHHHHHH
Q 044169 408 AFSQMVRND-AACDEFTYSS-----ILKAC-SLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKC--GSWEDAERV 478 (742)
Q Consensus 408 ~~~~m~~~g-~~p~~~t~~~-----ll~~~-~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~ 478 (742)
.|.+....- ...|...+.. ++... +..+. .-..+.....+...-++...+..++.+|... .+++.+.+.
T Consensus 240 ~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~--~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~ 317 (445)
T 4b4t_P 240 YLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGN--LQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKT 317 (445)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSS--TTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHH
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHH
Confidence 666554311 1112211111 11111 11111 1112222222222235667778888888764 457777777
Q ss_pred HHhcCCC
Q 044169 479 FSQLTAA 485 (742)
Q Consensus 479 ~~~~~~~ 485 (742)
|.....+
T Consensus 318 ~~~~L~~ 324 (445)
T 4b4t_P 318 YEPVLNE 324 (445)
T ss_dssp TCSSTTT
T ss_pred HHHHhcc
Confidence 7765533
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=87.33 E-value=4.3 Score=31.28 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=65.6
Q ss_pred ccchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHc
Q 044169 130 EECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKL 209 (742)
Q Consensus 130 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 209 (742)
....++|..|-+.+...|. ...+--.-+..+...|++++|..+.+....||..+|-+|-.. +.|..+++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3467888888888877763 444555556677889999999999999999999999887664 667778887777788
Q ss_pred hhCCCCCChhhH
Q 044169 210 DGIDVQPNHYTY 221 (742)
Q Consensus 210 ~~~~~~p~~~t~ 221 (742)
...| .|....|
T Consensus 96 a~sg-~p~~q~F 106 (116)
T 2p58_C 96 ARSQ-DPRIQTF 106 (116)
T ss_dssp TTCC-CHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7766 4444433
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.57 E-value=26 Score=34.37 Aligned_cols=135 Identities=10% Similarity=0.088 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHH----HHchhCCCCCChhhHHHHHHHHc
Q 044169 154 VTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFF----LKLDGIDVQPNHYTYSTMLAICG 229 (742)
Q Consensus 154 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~t~~~ll~~~~ 229 (742)
.|.++..-|.+.+++++|.+++-. -...+.+.|+...|.++- +...+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445566668889999999987643 134456667766655544 55566788899888888888877
Q ss_pred cCCChH-HHHHHHHHHH----HhC--CCCChhHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCC
Q 044169 230 SLSAID-EGKQLHAQTM----KLQ--YLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGD 299 (742)
Q Consensus 230 ~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 299 (742)
....-+ .-..+.+.++ +.| ...|+.....+...|.+.+++.+|+.-|=--.+++...+..++.-+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 655321 1233333333 334 345778888899999999999999888742222223566666655555444
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.52 E-value=4.1 Score=31.39 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=65.5
Q ss_pred cchHHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHch
Q 044169 131 ECLELGRRYHALITKTAVCGDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLD 210 (742)
Q Consensus 131 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 210 (742)
...++|..|-+.+...|. ...+--.-+..+...|++++|..+.+....||..+|-+|-.. +.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 467888888888877763 444555556677889999999999999999999999887664 7788888888887887
Q ss_pred hCCCCCChhhH
Q 044169 211 GIDVQPNHYTY 221 (742)
Q Consensus 211 ~~~~~p~~~t~ 221 (742)
.+| .|....|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 766 4444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.62 E-value=29 Score=34.03 Aligned_cols=167 Identities=13% Similarity=0.083 Sum_probs=98.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHH----HHHhHcCCCCChHHHHHHHHHhc
Q 044169 357 GTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAF----SQMVRNDAACDEFTYSSILKACS 432 (742)
Q Consensus 357 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 432 (742)
+.++..-|.+.+++++|.+++..- ...+.+.|+..-|-++- +-..+.++++|..+...++..+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566688889999998876553 23455666666555444 45556788888888888888777
Q ss_pred CCCCHH-HHHHHHHHH----HHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Q 044169 433 LLPSLA-TCEQIHSRI----VKSK--FESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARK 505 (742)
Q Consensus 433 ~~g~~~-~a~~i~~~~----~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 505 (742)
....-+ .=..+.+.+ .+.| -.-|+.....+...|.+.+++.+|+.-|-.-..+.+..+..++.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~- 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH- 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG-
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc-
Confidence 665321 112222222 3333 23456777888999999999999999884322223345544444443333211
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 044169 506 AIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVK 550 (742)
Q Consensus 506 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 550 (742)
.+|...-..++. |...++...|..+++...+
T Consensus 185 -------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 -------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 122222233333 4445788888887766654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.45 E-value=33 Score=38.01 Aligned_cols=54 Identities=13% Similarity=-0.004 Sum_probs=45.2
Q ss_pred HHHccCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccC
Q 044169 226 AICGSLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLV 280 (742)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 280 (742)
..|...|+++.|+.+-++.+..- +.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44566789999999988888774 5567789999999999999999999998886
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.42 E-value=16 Score=43.32 Aligned_cols=163 Identities=9% Similarity=0.085 Sum_probs=93.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHH
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLA 438 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 438 (742)
.++..+.+.+..+-+.++..-. +.+...--.+..+|...|++++|.+.|.+... |+..+.... ....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~--~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~ 883 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL--NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLR 883 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc--cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhc
Confidence 4555566666666666655544 33444444566778888888888888876422 222211100 0000
Q ss_pred HHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCc----hHHHHHHHHHHHcCCHHHHHH
Q 044169 439 TCEQIHSRIVKS-K-FESNVHVGSSLIEAYNKCGSWEDAERVFSQLT----AADV----VSWNSMIKAYSQNGRARKAII 508 (742)
Q Consensus 439 ~a~~i~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~ 508 (742)
. +..+... . ...-..-|..++..+.+.|.++.+.++-.... ..+. ..|..+..++...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 0111111 0 11123456677777878888777766554322 2221 258888999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 044169 509 LFEKMVVEGIRPTNSTFLAVLSACSHSGLVQD 540 (742)
Q Consensus 509 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 540 (742)
.+-.+.....+ ...+..++..++..|..++
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 88888765333 3456666666666665544
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=83.25 E-value=24 Score=35.66 Aligned_cols=159 Identities=13% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHH---HHHHHHHHhccCc-----HHHHHHHHHHhHHhcCCCCcHH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVE-GIRPTNST---FLAVLSACSHSGL-----VQDGQKVFESMVKEYGILPEEA 559 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t---~~~ll~a~~~~g~-----~~~a~~~~~~m~~~~~~~p~~~ 559 (742)
+...|...|.+.|+.++..+++...+.. +.-|-..| ...+++.+....+ ++-..+.++....+...-....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC---Cc
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNLP---IKPT-----APIWRPLFAACRCHSDLKMAEFISKQILELD----PD---DA 624 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----p~---~~ 624 (742)
.-..++..|...|++.+|.+++.++. .+.| ..++..-+..|...+|..++...+..+.... |+ -.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Q ss_pred hhHHHHHHHHH-hcCCHHHHHHHH
Q 044169 625 AVYVTLSNMYA-EAGLQADAEEQR 647 (742)
Q Consensus 625 ~~~~~l~~~y~-~~g~~~~A~~~~ 647 (742)
.....-|.++. ..++|.+|...|
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYF 204 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHH
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.02 E-value=3.3 Score=42.24 Aligned_cols=67 Identities=15% Similarity=0.031 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCC
Q 044169 593 WRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMK-----MKEISKEP 659 (742)
Q Consensus 593 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~-----~~~~~~~~ 659 (742)
...++.++...|+++++...+..++..+|-+...+..|+.+|.+.|+..+|.+.|+... +.|+.|.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34556677788899999999999999999888899999999999999999999888765 34665543
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.79 E-value=15 Score=28.41 Aligned_cols=88 Identities=9% Similarity=0.019 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044169 434 LPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKM 513 (742)
Q Consensus 434 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 513 (742)
....++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||...|-+|.. .+.|-.+++...+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456677777777666543 22222223445678899999999999999999999987754 4778888888888788
Q ss_pred HHcCCCCCHHHHH
Q 044169 514 VVEGIRPTNSTFL 526 (742)
Q Consensus 514 ~~~g~~p~~~t~~ 526 (742)
..+| .|....|.
T Consensus 95 a~sg-~p~~q~Fa 106 (115)
T 2uwj_G 95 GGSS-DPALADFA 106 (115)
T ss_dssp HTCS-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7765 55555554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=82.58 E-value=37 Score=32.94 Aligned_cols=167 Identities=8% Similarity=0.025 Sum_probs=98.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHH----HHHHhHcCCCCChHHHHHHHHHhc
Q 044169 357 GTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEA----FSQMVRNDAACDEFTYSSILKACS 432 (742)
Q Consensus 357 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 432 (742)
+.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ ++...+.+++++......++..+.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345666688889999998886653 2345566776665554 444556788888888888887766
Q ss_pred CCCC--H---HHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHc---CC
Q 044169 433 LLPS--L---ATCEQIHSRIVKSKF--ESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQN---GR 502 (742)
Q Consensus 433 ~~g~--~---~~a~~i~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 502 (742)
.... . +-..+......+.|- .-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 5331 1 112222233333332 246778888999999999999999887633222344444444433332 33
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 044169 503 ARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVK 550 (742)
Q Consensus 503 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 550 (742)
..++-- ..-..++ -|.-.|+...|..+++...+
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 322211 1112222 23456788888888887754
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.42 E-value=15 Score=28.36 Aligned_cols=88 Identities=13% Similarity=0.105 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044169 434 LPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKM 513 (742)
Q Consensus 434 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 513 (742)
....++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|... +.|-.+++...+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3456677777777666543 222222224456788999999999999999999999877553 677788888777777
Q ss_pred HHcCCCCCHHHHH
Q 044169 514 VVEGIRPTNSTFL 526 (742)
Q Consensus 514 ~~~g~~p~~~t~~ 526 (742)
..+| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7665 55544444
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.10 E-value=7.2 Score=33.64 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 625 AVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 625 ~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
..-..++.+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 34445666666666666666665544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=80.21 E-value=86 Score=35.61 Aligned_cols=156 Identities=11% Similarity=0.077 Sum_probs=72.9
Q ss_pred HHhCCCHHHHHHHHHhcCCCCChhh--HHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChH--HHHHHHHHhcCCCCHHH
Q 044169 364 YSGLGEIWEAKKQLKEMGKSASSVS--WNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEF--TYSSILKACSLLPSLAT 439 (742)
Q Consensus 364 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~ 439 (742)
|.-.|+-+....++..+....+... .-.+.-++...|+.+.+-.+++.+.... .|... ....+.-+|+..|+...
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHH
T ss_pred hcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHH
Confidence 3445555555555554310112112 2223334446677777776666665431 11111 11233445677777777
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCchHHHH--HHHHHHHcCCH-HHHHHHHHHHHH
Q 044169 440 CEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT-AADVVSWNS--MIKAYSQNGRA-RKAIILFEKMVV 515 (742)
Q Consensus 440 a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~--li~~~~~~g~~-~~A~~~~~~m~~ 515 (742)
..+++..+.... ..++.-...+.-+....|+.+.+.++++.+. ..|...-.. +.-+....|.. .+++.++..+..
T Consensus 579 Iq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 579 VKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 666777666532 2222222222223333555555666665443 233333222 23333334433 566777777764
Q ss_pred cCCCCCHHH
Q 044169 516 EGIRPTNST 524 (742)
Q Consensus 516 ~g~~p~~~t 524 (742)
.+|..+
T Consensus 658 ---D~d~~V 663 (963)
T 4ady_A 658 ---DPVDFV 663 (963)
T ss_dssp ---CSSHHH
T ss_pred ---CCCHHH
Confidence 455543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 742 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (123), Expect = 1e-07
Identities = 46/385 (11%), Positives = 105/385 (27%), Gaps = 15/385 (3%)
Query: 263 YIKCGMMEDAESVFEGLVQR---NVISWTAIINGFKQHGDYEKPLRLVCLMREDGIDPNE 319
+ G E AE L ++ N + + Q ++ +P
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAH--FSTLAIKQNPLL 66
Query: 320 YTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKE 379
L + R + H + R + G++ A +
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 380 MGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLAT 439
+ + G + + + S L
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186
Query: 440 CEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQ---LTAADVVSWNSMIKA 496
H + + + +L + ++ A + + L+ V ++
Sbjct: 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246
Query: 497 YSQNGRARKAIILFEKMVVEGIRPTNSTFLAVL-SACSHSGLVQDGQKVFESMVKEYGIL 555
Y + G AI + + + ++P L +A G V + + + + ++
Sbjct: 247 YYEQGLIDLAIDTYRRAI--ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-- 302
Query: 556 PEEAHYSCMVDLLGRAGKLEIALIFISN-LPIKPT-APIWRPLFAACRCHSDLKMAEFIS 613
+ + ++ G +E A+ L + P A L + + L+ A
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362
Query: 614 KQILELDPDDAAVYVTLSNMYAEAG 638
K+ + + P A Y + N E
Sbjct: 363 KEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 5e-05
Identities = 26/190 (13%), Positives = 63/190 (33%), Gaps = 10/190 (5%)
Query: 462 LIEAYNKCGSWEDAERVFSQLTAAD---VVSWNSMIKAYSQNGRARKAIILFEKMVVEGI 518
L +N G A F + D + ++ ++ + +A+ + + +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL-SLS 233
Query: 519 RPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAH-YSCMVDLLGRAGKLEIA 577
+ GL+ + ++ + P Y + + L G + A
Sbjct: 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEA 290
Query: 578 LIFISNL--PIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYA 635
+ A L R +++ A + ++ LE+ P+ AA + L+++
Sbjct: 291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350
Query: 636 EAGLQADAEE 645
+ G +A
Sbjct: 351 QQGKLQEALM 360
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 7e-05
Identities = 37/352 (10%), Positives = 98/352 (27%), Gaps = 23/352 (6%)
Query: 368 GEIWEAKKQLKEMGK--SASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYS 425
G+ A++ ++ + ++ + F+ ++ + + + ++ + +
Sbjct: 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP---LLAEA 69
Query: 426 SILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAA 485
E I + + + G + A +
Sbjct: 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129
Query: 486 DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVF 545
+ +A + + ++ I + +A + +
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189
Query: 546 ESMVKEYGILPEEAH-YSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRC 602
K + P Y + ++L A + A+ A + L
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249
Query: 603 HSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEISKEPGCS 662
+ +A ++ +EL P Y L+N E G A+AE+ + +
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309
Query: 663 W--------------IEVYNKIYRFFSQN-KSHSEMPKVYEKLKQLMQQIED 699
+ +Y K F + +HS + V ++ +L + +
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 742 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.48 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.07 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.97 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.96 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.94 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.92 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.91 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.88 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.85 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.84 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.7 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.56 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.54 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.43 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.4 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.38 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.37 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.35 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.34 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.32 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.27 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.23 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.18 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.12 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.07 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.07 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.04 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.01 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.96 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.94 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.93 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.93 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.83 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.77 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.76 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.68 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.56 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.46 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.44 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.41 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.41 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.32 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.03 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.0 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.98 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.9 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.88 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.71 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.24 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.01 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.96 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.14 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.46 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 90.73 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.72 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.6 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=5.3e-20 Score=191.34 Aligned_cols=246 Identities=12% Similarity=0.133 Sum_probs=190.7
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 044169 388 SWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYN 467 (742)
Q Consensus 388 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~ 467 (742)
............+....+...+.+..... +-+...+..+...+...|+.+.|...+....+.. +.+...+..+...|.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 214 (388)
T d1w3ba_ 137 VRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhh
Confidence 33334444445555555555555544432 2234455555666666677777777776666543 344567777888888
Q ss_pred hcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHH
Q 044169 468 KCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQK 543 (742)
Q Consensus 468 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 543 (742)
..|++++|...+.+.. ..+...|..+...+.+.|++++|+..|++..+. .|+ ..++..+..++...|++++|.+
T Consensus 215 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~ 292 (388)
T d1w3ba_ 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAED 292 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887765 445667888888999999999999999999884 565 4678888999999999999999
Q ss_pred HHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 044169 544 VFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDP 621 (742)
Q Consensus 544 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 621 (742)
.++.... ..+.+...+..+..++.+.|++++|++.+++.. ..| +..+|..+...+...|++++|+..++++++++|
T Consensus 293 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 370 (388)
T d1w3ba_ 293 CYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999876 345677788899999999999999999999854 455 577889999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCC
Q 044169 622 DDAAVYVTLSNMYAEAGL 639 (742)
Q Consensus 622 ~~~~~~~~l~~~y~~~g~ 639 (742)
+++.++..|+.+|.+.|+
T Consensus 371 ~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 371 TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 999999999999999886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.3e-18 Score=180.56 Aligned_cols=353 Identities=14% Similarity=0.075 Sum_probs=260.7
Q ss_pred HHhCCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Q 044169 294 FKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEA 373 (742)
Q Consensus 294 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 373 (742)
+.+.|++++|++.++++.+.. +-+...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++++|
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccc
Confidence 334455555555555544431 1123344444444445555555555555554443 22445566667777777777777
Q ss_pred HHHHHhc--CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 044169 374 KKQLKEM--GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSK 451 (742)
Q Consensus 374 ~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~ 451 (742)
...+... ....+...+..........+....+........... .................+....+...+.......
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T d1w3ba_ 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC
Confidence 7777665 113444455555555566666666666666655544 3344444455556667788888888877777654
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044169 452 FESNVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAV 528 (742)
Q Consensus 452 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 528 (742)
+.+...+..+...+...|++++|...+++.. +.+...|..+...+...|++++|+..+++....+ ..+...+..+
T Consensus 166 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 243 (388)
T d1w3ba_ 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNL 243 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred -cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHH
Confidence 4556788888999999999999999998765 3456689999999999999999999999998853 4455678888
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCH
Q 044169 529 LSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDL 606 (742)
Q Consensus 529 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~ 606 (742)
...+...|++++|.+.|+++.+ -.+.+...+..+..+|...|++++|++.++... .+.+...+..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 321 (388)
T d1w3ba_ 244 ACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCH
Confidence 8999999999999999999876 233456788999999999999999999998764 455788899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 607 KMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 607 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
++|+..++++++.+|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988753
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.7e-13 Score=136.46 Aligned_cols=241 Identities=12% Similarity=0.034 Sum_probs=160.6
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 044169 391 AQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCG 470 (742)
Q Consensus 391 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g 470 (742)
.....+.+.|++++|+..|++..+.. +-+..+|..+..++...|+++.|...+..+.+.. +.+...+..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34556677777777777777776653 2234556666666666666666666666665543 233445555555555555
Q ss_pred CHHHHHHHHHhcCC--CCch-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 044169 471 SWEDAERVFSQLTA--ADVV-SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFES 547 (742)
Q Consensus 471 ~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 547 (742)
++++|.+.+++... |+.. .+....... ...+.......+..+...+.+.+|.+.+..
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 55555555554431 1110 000000000 000000111122233445667888888888
Q ss_pred hHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 044169 548 MVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA 625 (742)
Q Consensus 548 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 625 (742)
..+...-.++...+..+...+...|++++|+..+++.. ..| +...|..+...+...|++++|.+.++++++++|+++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 77654445567788899999999999999999998854 344 5888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 626 VYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 626 ~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
++..++.+|.+.|++++|++.|++..+.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999988763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.4e-12 Score=128.13 Aligned_cols=266 Identities=10% Similarity=-0.020 Sum_probs=193.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc--CCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCC
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEM--GKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPS 436 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 436 (742)
.....+.+.|++++|...|++. ..+.+..+|..+..+|...|++++|+..|.+..+.. +-+...+..+...+...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 3556788999999999999997 214457889999999999999999999999988764 2356778888899999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 044169 437 LATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVE 516 (742)
Q Consensus 437 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 516 (742)
+++|.+.+..+.... |+............. ..+.......+..+...+.+.+|...+.+..+.
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAG---------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhhh---------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999988753 221110000000000 001111111223344556677888888887764
Q ss_pred C-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHH
Q 044169 517 G-IRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIW 593 (742)
Q Consensus 517 g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~ 593 (742)
. -.++...+..+...+...|++++|+..++..... .+-+...|..+..+|.+.|++++|++.|++.. ..| +..+|
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 2 1234567778888899999999999999998763 23356788889999999999999999998754 344 57889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh-----------HHHHHHHHHhcCCHHHHH
Q 044169 594 RPLFAACRCHSDLKMAEFISKQILELDPDDAAV-----------YVTLSNMYAEAGLQADAE 644 (742)
Q Consensus 594 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~y~~~g~~~~A~ 644 (742)
..+..+|.+.|++++|+..++++++++|++... +..+..++...|+.+.+.
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999998876553 455667777777776553
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=2.1e-08 Score=100.85 Aligned_cols=259 Identities=10% Similarity=-0.029 Sum_probs=165.8
Q ss_pred HHHHhCCCcHHHHHHHHHHhHcCCCCC----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----CCCC-chhHHHHHHH
Q 044169 394 AGFFRNQKTEEAIEAFSQMVRNDAACD----EFTYSSILKACSLLPSLATCEQIHSRIVKS----KFES-NVHVGSSLIE 464 (742)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~~-~~~~~~~li~ 464 (742)
..+...|++++|++++++..+.....+ ...+..+...+...|++++|...+....+. +..+ ....+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 344555566666666555544321111 123444445555566666666665554432 1111 1234445566
Q ss_pred HHHhcCCHHHHHHHHHhcC-------CCC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHH
Q 044169 465 AYNKCGSWEDAERVFSQLT-------AAD----VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIR----PTNSTFLAVL 529 (742)
Q Consensus 465 ~~~~~g~~~~A~~~~~~~~-------~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll 529 (742)
.|...|++..|...+.+.. .+. ...+..+...+...|+++.+...+.+....... .....+....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 6777777777777666542 111 124555667788889999999888887764221 1223455566
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCc-----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-----CHHHHHHHHH
Q 044169 530 SACSHSGLVQDGQKVFESMVKEYGILPE-----EAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-----TAPIWRPLFA 598 (742)
Q Consensus 530 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~l~~ 598 (742)
..+...+...++...+........-..+ ...+..+...+...|++++|...+++.. ..| ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 6777788888888887766543222111 2245667778889999999999998764 111 2445667788
Q ss_pred HHHHcCCHHHHHHHHHHHHhc------CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 599 ACRCHSDLKMAEFISKQILEL------DPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
.+...|++++|...+++++.. .|....++..++.+|...|++++|.+.+++..+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999998753 355567889999999999999999999988754
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=7.7e-09 Score=99.27 Aligned_cols=219 Identities=13% Similarity=-0.029 Sum_probs=127.4
Q ss_pred cHHHHHHHHHHhHcCC-CC--ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044169 402 TEEAIEAFSQMVRNDA-AC--DEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERV 478 (742)
Q Consensus 402 ~~~A~~~~~~m~~~g~-~p--~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 478 (742)
.+.++.-+++...... .+ ...++..+...+.+.|++++|...|+...+.. +.+..++..+..+|.+.|++++|.+.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3445555555544321 11 12345555666777777777777777777654 44567777888888888888888888
Q ss_pred HHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 044169 479 FSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGI 554 (742)
Q Consensus 479 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 554 (742)
|++.. +.+..+|..+..+|...|++++|+..|++..+. .|+ ......+..++.+.+..+....+...... .
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 168 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---S 168 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---S
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---c
Confidence 87776 334557777888888888888888888888774 343 33333333444455555545444444432 1
Q ss_pred CCcHHHHHHHHHHHhhcCC----HHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhH
Q 044169 555 LPEEAHYSCMVDLLGRAGK----LEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVY 627 (742)
Q Consensus 555 ~p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 627 (742)
.++...+. ++..+..... .+.+...+.... ..|+ ..+|..+...+...|++++|...+++++..+|++...|
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 12211222 2222222222 222222221110 1122 34566677778888888888888888888888765444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=6.1e-09 Score=103.02 Aligned_cols=191 Identities=9% Similarity=0.094 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 044169 457 HVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNG-RARKAIILFEKMVVEGIRPTN-STFLAVLSA 531 (742)
Q Consensus 457 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 531 (742)
..++.+..++.+.+..++|.++++++. +.+...|+....++...| ++++|+..+++..+. .|+. .+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhHH
Confidence 344445555666666666666666655 234446666666666654 366677776666653 4443 556666666
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCC----
Q 044169 532 CSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSD---- 605 (742)
Q Consensus 532 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~---- 605 (742)
+...|++++|++.++.+.+. -+.+...|..+..++.+.|++++|++.++++. ..| +...|+.+...+...+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh
Confidence 66667777777777666542 23345566666666777777777776666643 233 45566665555544443
Q ss_pred --HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 606 --LKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 606 --~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
+++|...+.++++++|++...+..++.++...| .+++.+.++...+
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 566777777777777777777777776655444 4556666655544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=2e-08 Score=99.17 Aligned_cols=177 Identities=10% Similarity=0.126 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHHhcC-CHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 044169 456 VHVGSSLIEAYNKCG-SWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLS 530 (742)
Q Consensus 456 ~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 530 (742)
...|+....++...| ++++|...+++.. +.+..+|+.+...+.+.|++++|+..++++.+. .|+ ...|..+..
T Consensus 77 ~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~ 154 (315)
T d2h6fa1 77 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQW 154 (315)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHH
Confidence 344444455555444 3566666655543 334556666666666667777777777776663 443 356666666
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCC------HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHH
Q 044169 531 ACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGK------LEIALIFISNLP-IKP-TAPIWRPLFAACRC 602 (742)
Q Consensus 531 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~ 602 (742)
.+.+.|++++|++.++.+++. -+.+...|+.+..++.+.|. +++|++.+.+.. ..| +...|..+...+..
T Consensus 155 ~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~ 232 (315)
T d2h6fa1 155 VIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD 232 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 666777777777777766552 12244455555555555444 567777766543 344 57777777666544
Q ss_pred cCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHHhc
Q 044169 603 HSDLKMAEFISKQILELDPD--DAAVYVTLSNMYAEA 637 (742)
Q Consensus 603 ~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~ 637 (742)
...+++.+.++.++++.|+ ++..+..++.+|...
T Consensus 233 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 233 -RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp -TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred -cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence 3457788888888888775 445566777777543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=6.2e-09 Score=99.95 Aligned_cols=213 Identities=13% Similarity=0.019 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHHhCC-CC--chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHH
Q 044169 437 LATCEQIHSRIVKSKF-ES--NVHVGSSLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILF 510 (742)
Q Consensus 437 ~~~a~~i~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 510 (742)
.+.+..-++++..... .+ ...++..+..+|.+.|++++|...|++.. +.++.+|+.+..+|.+.|++++|+..|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 3444555555554321 11 23567778899999999999999999876 456779999999999999999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC
Q 044169 511 EKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP 588 (742)
Q Consensus 511 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p 588 (742)
+++.+. .|+ ..++..+..++...|++++|.+.|+...+.. +.+......+...+.+.+..+.+..+..... ..+
T Consensus 95 ~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 95 DSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 999984 565 4678888999999999999999999997642 3344444445555566665555444433322 122
Q ss_pred CHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 589 TAPIWRPLFAACR----CHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 589 ~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
+...+. ++..+. ..+..+.+...+.......|....++..++.+|...|++++|.+.+++..+..
T Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 171 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 222222 122221 22234445555555555667677789999999999999999999999987654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.91 E-value=1.4e-09 Score=109.11 Aligned_cols=229 Identities=11% Similarity=-0.060 Sum_probs=164.8
Q ss_pred CCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHH
Q 044169 399 NQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSL--LPSLATCEQIHSRIVKSKFESNVHVG-SSLIEAYNKCGSWEDA 475 (742)
Q Consensus 399 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~g~~~~a~~i~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A 475 (742)
.|++++|+..++...+.. +-+...|.....++.. .++.+++...+..+.+.. +++...+ ......+...|..++|
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHH
Confidence 345678888888887753 2244555555545444 445888888888888765 3344443 4555777888999999
Q ss_pred HHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 044169 476 ERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEY 552 (742)
Q Consensus 476 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 552 (742)
...++... +.+..+|+.+...+.+.|++++|...+++..+. .|+.. .+...+...+..+++...+.....
T Consensus 164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~-- 236 (334)
T d1dcea1 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL-- 236 (334)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH--
Confidence 99999887 345668999999999999988887666554442 23221 223334455666777777777654
Q ss_pred CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 044169 553 GILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTL 630 (742)
Q Consensus 553 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 630 (742)
.-+++...+..++..+...|+.++|.+.+.+.. ..| +..+|..+...+...|++++|.+.++++++++|.+...|..|
T Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 237 GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 334445556677788888999999999998754 445 456778888889999999999999999999999888899988
Q ss_pred HHHHHh
Q 044169 631 SNMYAE 636 (742)
Q Consensus 631 ~~~y~~ 636 (742)
...+.-
T Consensus 317 ~~~~~~ 322 (334)
T d1dcea1 317 RSKFLL 322 (334)
T ss_dssp HHHHHH
T ss_pred HHHHhH
Confidence 877764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.88 E-value=1.4e-07 Score=92.73 Aligned_cols=179 Identities=6% Similarity=0.045 Sum_probs=101.4
Q ss_pred HHHHHHHHHhcC----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 044169 472 WEDAERVFSQLT----AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFES 547 (742)
Q Consensus 472 ~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 547 (742)
.++|..+|++.. +.+...|...+..+...|++++|..+|+++++.........|...+..+.+.|+.+.|.++|+.
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 455555665532 2234456666666666666666666666666532111123456666666666666666666666
Q ss_pred hHHhcCCCCcHHHHHHHHHH-HhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 548 MVKEYGILPEEAHYSCMVDL-LGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 548 m~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
+.+. .+.+...|...+.. +...|+.+.|..+|+.+. .+.+...|..++......|+.+.|..+|+++++..|.++
T Consensus 160 al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 ARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 6542 22233333333332 233466666666666543 223456666666666677777777777777766555333
Q ss_pred ----hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 625 ----AVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 625 ----~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
..|...+..-...|+.+.+.++.+++.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2455555555666777777776666544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.85 E-value=1.6e-07 Score=92.32 Aligned_cols=186 Identities=13% Similarity=0.155 Sum_probs=148.3
Q ss_pred CHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-C-chHHHHHHHHHHHcCCHHHHHHHHH
Q 044169 436 SLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLT--AA-D-VVSWNSMIKAYSQNGRARKAIILFE 511 (742)
Q Consensus 436 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~-~~~~~~li~~~~~~g~~~~A~~~~~ 511 (742)
..+.+..+++...+...+.+...+...+..+.+.|+++.|..+|+++. .| + ...|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 457788888888876556667788888999999999999999999875 22 3 3378999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC----C
Q 044169 512 KMVVEGIRPTNSTFLAVLS-ACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP----I 586 (742)
Q Consensus 512 ~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~ 586 (742)
++++.+ +.+...|..... -+...|+.+.|..+|+.+.+. .+.+...|..+++.+.+.|+++.|..+|++.. .
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 999863 223344443333 234568999999999999874 34567789999999999999999999999752 2
Q ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 044169 587 KP--TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDA 624 (742)
Q Consensus 587 ~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 624 (742)
.| ....|...+..-..+|+.+.+..+++++.+..|++.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 33 256899999988999999999999999999988653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=8.7e-07 Score=88.57 Aligned_cols=191 Identities=11% Similarity=0.065 Sum_probs=109.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc-------CCCCC---hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCC----CCChHHH
Q 044169 359 AIVDMYSGLGEIWEAKKQLKEM-------GKSAS---SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDA----ACDEFTY 424 (742)
Q Consensus 359 ~li~~~~~~g~~~~A~~~~~~~-------~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~ 424 (742)
.+...+...|++..+...+... ..... ...+..+...+...|+++.+...+........ .....++
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 3444555666666665555443 10111 12344555667777777777777776655321 1122344
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHh----CCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------CchHHH
Q 044169 425 SSILKACSLLPSLATCEQIHSRIVKS----KFES--NVHVGSSLIEAYNKCGSWEDAERVFSQLTAA-------DVVSWN 491 (742)
Q Consensus 425 ~~ll~~~~~~g~~~~a~~i~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~ 491 (742)
......+...+....+...+...... +..+ ....+..+...+...|+.++|...++..... ....+.
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 44445555666776666666554432 1111 1234455566677778888888777766521 112455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhH
Q 044169 492 SMIKAYSQNGRARKAIILFEKMVV----EGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMV 549 (742)
Q Consensus 492 ~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 549 (742)
.+..++...|++++|...+++... .+..|+. ..+..+..++...|++++|.+.+++..
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566777777888888877776653 2344443 346666667777777777777777654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.70 E-value=1.5e-08 Score=101.50 Aligned_cols=247 Identities=7% Similarity=-0.053 Sum_probs=173.7
Q ss_pred HhCCCcHHHHHHHHHHhHcCCCCChHH-HH---HHHHHhcC-------CCCHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 044169 397 FRNQKTEEAIEAFSQMVRNDAACDEFT-YS---SILKACSL-------LPSLATCEQIHSRIVKSKFESNVHVGSSLIEA 465 (742)
Q Consensus 397 ~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~---~ll~~~~~-------~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 465 (742)
...+..++|++++++..+. .|+..+ |+ .++..... .|.++++..+++.+.+.. +.+...+..+..+
T Consensus 40 ~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~ 116 (334)
T d1dcea1 40 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 116 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHH
Confidence 3334457888888877764 455433 22 22222222 344677888888887764 5566777777777
Q ss_pred HHhcC--CHHHHHHHHHhcC---CCCchHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcH
Q 044169 466 YNKCG--SWEDAERVFSQLT---AADVVSWNSM-IKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLV 538 (742)
Q Consensus 466 ~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 538 (742)
+...+ +.++|...+.++. .++...|... ...+...+.+++|+..++++.+. .|+ ...|..+..++...|++
T Consensus 117 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~~~~~~~~ 194 (334)
T d1dcea1 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQ 194 (334)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCH
Confidence 76665 4889999888875 3455566544 45667789999999999988874 454 46788888888888888
Q ss_pred HHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044169 539 QDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQI 616 (742)
Q Consensus 539 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 616 (742)
++|...++...+. .|+ ...+...+...+..+++...+.+.. .+++...+..+...+...++.++|...+.+.
T Consensus 195 ~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 268 (334)
T d1dcea1 195 PDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQEL 268 (334)
T ss_dssp CCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8776666554331 111 1223344556666777777666542 2334555667777788889999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 617 LELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 617 ~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
++.+|++..++..++.+|...|++++|.+.+++..+..
T Consensus 269 ~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 269 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp CTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred HhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999987643
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.56 E-value=2.4e-07 Score=84.53 Aligned_cols=96 Identities=14% Similarity=-0.057 Sum_probs=52.5
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 044169 556 PEEAHYSCMVDLLGRAGKLEIALIFISNLP-I-KPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNM 633 (742)
Q Consensus 556 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 633 (742)
|+...+...+..|.+.|++++|+..|++.. . +.++..|..+..+|.+.|++++|+..++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 334444444555555555555555554432 2 22455555555555566666666666666666666555556666666
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 044169 634 YAEAGLQADAEEQRKLMK 651 (742)
Q Consensus 634 y~~~g~~~~A~~~~~~m~ 651 (742)
|...|++++|...+++..
T Consensus 82 ~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666666666665555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=3e-07 Score=75.32 Aligned_cols=91 Identities=15% Similarity=0.003 Sum_probs=66.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHH
Q 044169 564 MVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQA 641 (742)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 641 (742)
-...+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 3456667777777777777653 23356677777777777888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCC
Q 044169 642 DAEEQRKLMKMKE 654 (742)
Q Consensus 642 ~A~~~~~~m~~~~ 654 (742)
+|...+++..+..
T Consensus 89 ~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 89 EAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC
Confidence 8888877776543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=6.4e-07 Score=73.31 Aligned_cols=106 Identities=14% Similarity=0.042 Sum_probs=87.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCC
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSD 605 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~ 605 (742)
-...+...|++++|+..|++.++. -+.+...|..+..+|.+.|++++|+..+++.. .+.++..|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 345677788888888888888763 34456678888888888999999988888754 34578889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 044169 606 LKMAEFISKQILELDPDDAAVYVTLSNMYA 635 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 635 (742)
+++|+..++++++++|+++.++..+.++-.
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999998888877643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.43 E-value=5.3e-07 Score=73.15 Aligned_cols=88 Identities=17% Similarity=0.075 Sum_probs=79.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 044169 563 CMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQ 640 (742)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 640 (742)
.+...+.+.|++++|+..|++.. ..| ++.+|..+..++...|++++|+..++++++++|+++.++..++.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 45677888999999999998864 445 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 044169 641 ADAEEQRKLM 650 (742)
Q Consensus 641 ~~A~~~~~~m 650 (742)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=3.5e-06 Score=75.73 Aligned_cols=140 Identities=10% Similarity=-0.006 Sum_probs=101.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHH
Q 044169 463 IEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDG 541 (742)
Q Consensus 463 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 541 (742)
...+...|++++|.+.|.++.+++...|..+..+|...|++++|++.|++.++. .|+. ..|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence 445678899999999999988888888988999999999999999999999884 5554 6788888888999999999
Q ss_pred HHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 044169 542 QKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPT-APIWRPLFAACRCHSDLKMAEFISKQILELD 620 (742)
Q Consensus 542 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 620 (742)
.+.|++.... .+.+... .|...| ...+.+ ..++..+..++.+.|++++|.+.+++++++.
T Consensus 90 ~~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9888887642 1111100 000000 001111 2455567777888999999999999999988
Q ss_pred CCC
Q 044169 621 PDD 623 (742)
Q Consensus 621 p~~ 623 (742)
|+.
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 854
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=1.8e-06 Score=77.74 Aligned_cols=88 Identities=16% Similarity=0.043 Sum_probs=81.9
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 044169 565 VDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAE 644 (742)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 644 (742)
...+...|++++|++.|+++. +|++.+|..+...+...|++++|+..|+++++++|+++..|..++.+|.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 556788999999999999875 7788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 044169 645 EQRKLMKMK 653 (742)
Q Consensus 645 ~~~~~m~~~ 653 (742)
+.|++....
T Consensus 91 ~~~~kAl~~ 99 (192)
T d1hh8a_ 91 KDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988753
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=3.2e-06 Score=73.45 Aligned_cols=117 Identities=9% Similarity=-0.040 Sum_probs=91.6
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCC
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSD 605 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~ 605 (742)
-...|.+.|++++|+..|++..+. -+.+...|..+..+|...|++++|+..|++.. ..| +..+|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 345677888888888888888763 23456678888888888888888888888764 344 67889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHH--HhcCCHHHHHHH
Q 044169 606 LKMAEFISKQILELDPDDAAVYVTLSNMY--AEAGLQADAEEQ 646 (742)
Q Consensus 606 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y--~~~g~~~~A~~~ 646 (742)
+++|...++++++++|+++..+..+..+. ...+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999888877664 344556666544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.35 E-value=3e-06 Score=82.08 Aligned_cols=189 Identities=12% Similarity=-0.004 Sum_probs=125.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHHH
Q 044169 462 LIEAYNKCGSWEDAERVFSQLTA-----AD----VVSWNSMIKAYSQNGRARKAIILFEKMVVEGI---RPT--NSTFLA 527 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ 527 (742)
...+|...|++++|.+.|.+... .+ ..+|..+..+|.+.|++++|++.+++..+.-. .+. ..++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 45667788888888888876641 12 24778888889899999999998887654211 111 234566
Q ss_pred HHHHHh-ccCcHHHHHHHHHHhHHhc---CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-------H-HHH
Q 044169 528 VLSACS-HSGLVQDGQKVFESMVKEY---GILPE-EAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-------A-PIW 593 (742)
Q Consensus 528 ll~a~~-~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-------~-~~~ 593 (742)
+...|. ..|++++|++.+++..+-. +.++. ..++..++..|...|++++|++.++++. ..++ . ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 4699999999998875421 11121 3357788999999999999999998753 1111 1 123
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHHh--cCCHHHHHHHHHHH
Q 044169 594 RPLFAACRCHSDLKMAEFISKQILELDPDDA-----AVYVTLSNMYAE--AGLQADAEEQRKLM 650 (742)
Q Consensus 594 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-----~~~~~l~~~y~~--~g~~~~A~~~~~~m 650 (742)
...+-.+...|+.+.|...++++.+.+|..+ .....++.+|.. .+.+++|...|+.+
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3444556788999999999999999987522 244556666665 34688888877543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=2e-06 Score=74.84 Aligned_cols=92 Identities=15% Similarity=-0.015 Sum_probs=83.1
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCH
Q 044169 563 CMVDLLGRAGKLEIALIFISNLP-I-KPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQ 640 (742)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 640 (742)
.....|.+.|++++|+..|++.. . +.+...|..+...+...|++++|...++++++++|++..+|..++.+|...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 34567889999999999999864 3 446888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 044169 641 ADAEEQRKLMKMKE 654 (742)
Q Consensus 641 ~~A~~~~~~m~~~~ 654 (742)
++|.+.+++.....
T Consensus 95 ~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 95 RAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999987644
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.32 E-value=1.1e-06 Score=80.04 Aligned_cols=116 Identities=7% Similarity=-0.122 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHH
Q 044169 520 PTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLF 597 (742)
Q Consensus 520 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 597 (742)
|+...+......+.+.|++++|+..|+++++. -+.+...|..++.+|.+.|++++|+..|++.. ..| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 55555566666777777777777777776552 23445567777777777777777777777643 445 466777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 044169 598 AACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEA 637 (742)
Q Consensus 598 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 637 (742)
.++...|++++|...++++++++|++...+...+..+...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~ 119 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 7777777788887777777777765554444444444433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=1e-05 Score=70.97 Aligned_cols=133 Identities=14% Similarity=0.091 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHh
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLG 569 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 569 (742)
+......+.+.|++++|+..|++.++. -|... +..+.-......+ -..+|..+..+|.
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~------------~~~~~~~~~~~~~--------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSW--LEYES------------SFSNEEAQKAQAL--------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCC------------CCCSHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcc------------ccchHHHhhhchh--------HHHHHHHHHHHHH
Confidence 444555677777777777777777653 11100 0000000111111 1235677889999
Q ss_pred hcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 044169 570 RAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAE 644 (742)
Q Consensus 570 ~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 644 (742)
+.|++++|+..+++.. ..| ++..|..+..++...|++++|...++++++++|+|+.+...+..+....+...+..
T Consensus 74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998764 445 78889999999999999999999999999999999999999999887777666543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=4e-06 Score=68.62 Aligned_cols=107 Identities=12% Similarity=-0.024 Sum_probs=81.8
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCC---HHHHHHHHHhCC-CCCCH---HHHHHHHH
Q 044169 526 LAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGK---LEIALIFISNLP-IKPTA---PIWRPLFA 598 (742)
Q Consensus 526 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~p~~---~~~~~l~~ 598 (742)
..+++.+...+++++|.+.|+..... -+.+..++..+..++.+.++ +++|+.+++++. ..|++ .+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 34677777888889999999888762 24466777888888877554 456888888864 33433 36778888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 044169 599 ACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMY 634 (742)
Q Consensus 599 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 634 (742)
+|.+.|++++|++.++++++++|++..+...+..+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999999999999999999887776665443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.18 E-value=2.3e-05 Score=75.60 Aligned_cols=173 Identities=10% Similarity=0.015 Sum_probs=129.9
Q ss_pred CHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCcHHHHHHHH
Q 044169 471 SWEDAERVFSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVE----GIRPTN-STFLAVLSACSHSGLVQDGQKVF 545 (742)
Q Consensus 471 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~ 545 (742)
++++|.++|.+ ....|...|++++|.+.|.++.+. +-.++. .+|..+..+|.+.|++++|.+.+
T Consensus 32 ~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 46777766544 577899999999999999988753 222322 57888899999999999999999
Q ss_pred HHhHHhcCCCCc----HHHHHHHHHHHhh-cCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 044169 546 ESMVKEYGILPE----EAHYSCMVDLLGR-AGKLEIALIFISNLP----IKPT----APIWRPLFAACRCHSDLKMAEFI 612 (742)
Q Consensus 546 ~~m~~~~~~~p~----~~~~~~l~~~~~~-~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~ 612 (742)
+...+...-..+ ...+..+...|.. .|++++|++.+++.. ...+ ..++..+...+...|++++|...
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 987653211112 3456677777754 699999999997653 1112 34577788889999999999999
Q ss_pred HHHHHhcCCCCch-------hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 613 SKQILELDPDDAA-------VYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 613 ~~~~~~~~p~~~~-------~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
++++++..|.++. .+...+..+...|+++.|.+.+++..+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999998776542 35677778889999999999998877544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.12 E-value=0.00036 Score=65.83 Aligned_cols=226 Identities=11% Similarity=-0.010 Sum_probs=131.3
Q ss_pred hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhCCCCchhHHHH
Q 044169 386 SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSL----LPSLATCEQIHSRIVKSKFESNVHVGSS 461 (742)
Q Consensus 386 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~~ 461 (742)
+..+..+...+.+.+++++|++.|++..+.| +...+..|...+.. ..+...+...+....+.+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---------- 68 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---------- 68 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----------
Confidence 3455556666666677777777777666554 22333333333322 233444444444333322
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--Hhcc
Q 044169 462 LIEAYNKCGSWEDAERVFSQLTAADVVSWNSMIKAYSQ----NGRARKAIILFEKMVVEGIRPTNSTFLAVLSA--CSHS 535 (742)
Q Consensus 462 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~ 535 (742)
+...+..+...+.. .++.+.|...++...+.|........ ..... ....
T Consensus 69 ------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~~ 123 (265)
T d1ouva_ 69 ------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVVT 123 (265)
T ss_dssp ------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSSC
T ss_pred ------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCccc
Confidence 22233333333322 34566777777777665432211111 11111 1223
Q ss_pred CcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHH
Q 044169 536 GLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR----AGKLEIALIFISNLPIKPTAPIWRPLFAACRC----HSDLK 607 (742)
Q Consensus 536 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 607 (742)
.....+...+..... ..+...+..|...|.. ..+...+...++......+..+...+...+.. ..|++
T Consensus 124 ~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 124 RDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred chhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchh
Confidence 456666666665533 2445566666666664 44566777777665444567777677666654 56899
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 044169 608 MAEFISKQILELDPDDAAVYVTLSNMYAE----AGLQADAEEQRKLMKMKEI 655 (742)
Q Consensus 608 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~~~ 655 (742)
.|+..++++.+.+ ++..+..|+.+|.+ ..+.++|.++|++..+.|.
T Consensus 200 ~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 9999999998885 57788899999986 4478999999999887764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=2.7e-05 Score=68.15 Aligned_cols=64 Identities=11% Similarity=-0.104 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 591 PIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
.+|..+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...|+...+..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4567778889999999999999999999999999999999999999999999999999987644
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.07 E-value=5.2e-05 Score=66.13 Aligned_cols=92 Identities=10% Similarity=-0.036 Sum_probs=76.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhc
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEA 637 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 637 (742)
.|..+..+|.+.|++++|+..+++.. .+.+..+|..+..++...|++++|...++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 56678889999999999999998764 3457888999999999999999999999999999999999999999888777
Q ss_pred CCHHH-HHHHHHHHH
Q 044169 638 GLQAD-AEEQRKLMK 651 (742)
Q Consensus 638 g~~~~-A~~~~~~m~ 651 (742)
+...+ ..+.+..|-
T Consensus 146 ~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 146 KEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 76554 444555443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.04 E-value=4.8e-05 Score=65.14 Aligned_cols=64 Identities=14% Similarity=0.067 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 591 PIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
.++..+..+|.+.|++++|+..++++++++|++..+|..++.+|...|++++|...|+...+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4567788889999999999999999999999999999999999999999999999998887643
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=9.5e-06 Score=67.28 Aligned_cols=92 Identities=11% Similarity=0.056 Sum_probs=76.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-------hHHHHH
Q 044169 561 YSCMVDLLGRAGKLEIALIFISNLP-I-KPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAA-------VYVTLS 631 (742)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 631 (742)
+..+...|.+.|++++|++.|++.. . +.+..+|..+..+|.+.|++++|+..++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 4457778888999999999888754 3 446888999999999999999999999999999887654 566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 044169 632 NMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 632 ~~y~~~g~~~~A~~~~~~m~~ 652 (742)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 888899999999999987653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.01 E-value=0.0012 Score=63.74 Aligned_cols=218 Identities=10% Similarity=0.022 Sum_probs=123.3
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHchhCCCCCChhhHHHHHHHHc
Q 044169 150 GDQFVTASLVNMYAKCGDIKSMVAVVKQMPYLDIASCNCLLAGYAKNALFDQAFSFFLKLDGIDVQPNHYTYSTMLAICG 229 (742)
Q Consensus 150 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 229 (742)
|+..--..+.+.|.+.|.++.|..++..+. -|..++..+.+.+++..|.+.+.+.. +..+|..+..+|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHH
Confidence 333444455566667777777777776554 46677777777777777777766442 4557777777776
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHhCCCcchHHHH
Q 044169 230 SLSAIDEGKQLHAQTMKLQYLSKTAVSNALLTMYIKCGMMEDAESVFEGLVQ---RNVISWTAIINGFKQHGDYEKPLRL 306 (742)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 306 (742)
+......+ .+.......++.....++..|-..|.+++...+++.... .+...++.++..|++.+ .++ +
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~k---l 151 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQK---M 151 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHH---H
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHH---H
Confidence 66555432 222222334455556788888888888888888886533 45566888888888754 233 3
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCCh
Q 044169 307 VCLMREDGIDPNEYTFTVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASS 386 (742)
Q Consensus 307 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 386 (742)
.+.+...+ +..-...++..|.+.+-+. .++..|.+.|++++|..+.-.- .++.
T Consensus 152 ~e~l~~~s---~~y~~~k~~~~c~~~~l~~----------------------elv~Ly~~~~~~~~A~~~~i~~--~~~~ 204 (336)
T d1b89a_ 152 REHLELFW---SRVNIPKVLRAAEQAHLWA----------------------ELVFLYDKYEEYDNAIITMMNH--PTDA 204 (336)
T ss_dssp HHHHHHHS---TTSCHHHHHHHHHTTTCHH----------------------HHHHHHHHTTCHHHHHHHHHHS--TTTT
T ss_pred HHHHHhcc---ccCCHHHHHHHHHHcCChH----------------------HHHHHHHhcCCHHHHHHHHHHc--chhh
Confidence 33333321 1222333455555544433 3566677888888877665543 3444
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHhH
Q 044169 387 VSWNAQIAGFFRNQKTEEAIEAFSQMVR 414 (742)
Q Consensus 387 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 414 (742)
......+..+.+.++++...++.....+
T Consensus 205 ~~~~~f~e~~~k~~N~e~~~~~i~~yL~ 232 (336)
T d1b89a_ 205 WKEGQFKDIITKVANVELYYRAIQFYLE 232 (336)
T ss_dssp CCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHH
Confidence 4455566677777777766666655544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=1.1e-05 Score=65.84 Aligned_cols=93 Identities=8% Similarity=-0.105 Sum_probs=77.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCC--chhHHHHHHHH
Q 044169 562 SCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACRCHS---DLKMAEFISKQILELDPDD--AAVYVTLSNMY 634 (742)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y 634 (742)
..+++.+...+++++|.+.|++.. .+.++.++..+..++.+.+ +.++|+.+++++++.+|.+ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 457788889999999999999865 3456788888888887644 5567999999999988754 34789999999
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 044169 635 AEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 635 ~~~g~~~~A~~~~~~m~~~~ 654 (742)
.+.|++++|.+.++++.+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHhC
Confidence 99999999999999998744
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.94 E-value=4.6e-05 Score=65.24 Aligned_cols=127 Identities=10% Similarity=-0.043 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLL 568 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 568 (742)
.+......+.+.|++.+|+..|.+.+.. .|... ...-......... ....+|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~~--------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKKN--------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHHhhhh--------HHHHHHhhHHHHH
Confidence 4555667778888888888888887753 11110 0000000000000 1224677889999
Q ss_pred hhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 044169 569 GRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAE 636 (742)
Q Consensus 569 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 636 (742)
.+.|++++|++.+++.. ..| +..+|..+..++...|++++|...++++++++|+|+.+...+..+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999998854 344 788999999999999999999999999999999999888877766543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.93 E-value=3.9e-05 Score=67.04 Aligned_cols=65 Identities=15% Similarity=-0.022 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 044169 589 TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMK 653 (742)
Q Consensus 589 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 653 (742)
+...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.|++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34567777788889999999999999999999999999999999999999999999999888764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.93 E-value=3.2e-05 Score=67.61 Aligned_cols=132 Identities=14% Similarity=0.059 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-cHHHHHHHHHHH
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILP-EEAHYSCMVDLL 568 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~ 568 (742)
+......+...|++++|+..|.++++. .+ .........+.. .+.| ....|..+..+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~----------~~~~~~~~~~~~----------~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VE----------GSRAAAEDADGA----------KLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HH----------HHHHHSCHHHHG----------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--hh----------hhhhhhhhHHHH----------HhChhhHHHHHHHHHHH
Confidence 444556677788888888888776641 00 000000111100 1112 344677888999
Q ss_pred hhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 044169 569 GRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 569 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 643 (742)
.+.|++++|+..+++.. ..| ++..|..+..++...|++++|+..++++++++|+++.+...+..++.+.....++
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998853 445 6888999999999999999999999999999999999999998887766555544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=0.0066 Score=58.25 Aligned_cols=274 Identities=10% Similarity=0.068 Sum_probs=132.7
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCc
Q 044169 323 TVALASCASLRNSHMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKT 402 (742)
Q Consensus 323 ~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 402 (742)
..+..-|.+.|.++.|..++..+.. +..++..|.+.++++.|.+.+.+.. +..+|..+...+.+....
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~---~~~~~k~~~~~l~~~~e~ 85 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFACVDGKEF 85 (336)
T ss_dssp -----------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT---CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC---CHHHHHHHHHHHHhCcHH
Confidence 3334444444455544444443221 2345555566666666666666543 445666666666665544
Q ss_pred HHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044169 403 EEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQL 482 (742)
Q Consensus 403 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 482 (742)
.-+ .+.......+......++..|-..|..+....+++..... -..+...++-++..|++.+. ++-.+.+...
T Consensus 86 ~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~ 158 (336)
T d1b89a_ 86 RLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREHLELF 158 (336)
T ss_dssp HHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHHHHHH
T ss_pred HHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHHHHhc
Confidence 332 2222233344455556666666677777666666655432 13455566667777766543 3333333332
Q ss_pred CC-C----------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 044169 483 TA-A----------DVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKE 551 (742)
Q Consensus 483 ~~-~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 551 (742)
.. - ....|.-++-.|.+.|++++|..+. .+ ..++.......+..+.+.++.+...++.......
T Consensus 159 s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~--~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~ 233 (336)
T d1b89a_ 159 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MN--HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 233 (336)
T ss_dssp STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HH--STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HH--cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc
Confidence 21 1 1112444555555666666555442 22 1233322333444455555555544444443331
Q ss_pred cCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 044169 552 YGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLS 631 (742)
Q Consensus 552 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 631 (742)
.|+ ..+.++......-+..+..+.+++- +++......++...+.+ +..+...|.
T Consensus 234 ---~p~--~i~~lL~~v~~~~d~~r~V~~~~k~-------------------~~l~li~p~Le~v~~~n--~~~vn~al~ 287 (336)
T d1b89a_ 234 ---KPL--LLNDLLMVLSPRLDHTRAVNYFSKV-------------------KQLPLVKPYLRSVQNHN--NKSVNESLN 287 (336)
T ss_dssp ---CGG--GHHHHHHHHGGGCCHHHHHHHHHHT-------------------TCTTTTHHHHHHHHTTC--CHHHHHHHH
T ss_pred ---CHH--HHHHHHHHhccCCCHHHHHHHHHhc-------------------CCcHHHHHHHHHHHHcC--hHHHHHHHH
Confidence 232 2344555555555555555555443 33334444444433322 456788888
Q ss_pred HHHHhcCCHHHHHHH
Q 044169 632 NMYAEAGLQADAEEQ 646 (742)
Q Consensus 632 ~~y~~~g~~~~A~~~ 646 (742)
.+|...++++.-++.
T Consensus 288 ~lyie~~d~~~l~~~ 302 (336)
T d1b89a_ 288 NLFITEEDYQALRTS 302 (336)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHhCcchhHHHHHH
Confidence 888888886554433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=2.8e-06 Score=89.25 Aligned_cols=107 Identities=9% Similarity=-0.014 Sum_probs=39.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHH
Q 044169 525 FLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKP-TAPIWRPLFAACRC 602 (742)
Q Consensus 525 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~ 602 (742)
+..+...+.+.|+.++|...+....+. .| ...+..+.+++...|++++|+..|++.. ..| +...|+.|...+..
T Consensus 123 ~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 123 SSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS 198 (497)
T ss_dssp --------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred HHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344444444445555544444433221 01 1234444455555555555555554432 222 23445555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 044169 603 HSDLKMAEFISKQILELDPDDAAVYVTLSNMYA 635 (742)
Q Consensus 603 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 635 (742)
.|+..+|...|.+++..+|+.+.++..|+.++.
T Consensus 199 ~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 555555555555555555445555555544443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.77 E-value=0.00035 Score=60.63 Aligned_cols=64 Identities=9% Similarity=-0.075 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 591 PIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
.++..+..++.+.|++++|+..++++++++|++..+|..++.+|...|++++|.+.|+.+.+..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3466677788999999999999999999999999999999999999999999999999987643
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.76 E-value=0.0086 Score=55.79 Aligned_cols=224 Identities=12% Similarity=-0.014 Sum_probs=123.8
Q ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh----CCCcHHHHHHHHHHhHcCCCCChHHHHHHH
Q 044169 353 GDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFR----NQKTEEAIEAFSQMVRNDAACDEFTYSSIL 428 (742)
Q Consensus 353 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 428 (742)
|+..+..|...+.+.+++++|.+.|++.-...+..++..|...|.. ..+...|...+......+. ......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhhccc
Confidence 3456667777888899999999999998335577777777777776 6678889999888777662 22222222
Q ss_pred HH----hcCCCCHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Q 044169 429 KA----CSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNK----CGSWEDAERVFSQLT-AADVVSWNSMIKAYSQ 499 (742)
Q Consensus 429 ~~----~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~ 499 (742)
.. .....+.+.+...++...+.|... ....+...+.. ......+...+.... ..+...+..|...|..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 22 234567788888888777765321 11222222221 233444444444333 3344444444444443
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhh----c
Q 044169 500 ----NGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGR----A 571 (742)
Q Consensus 500 ----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~ 571 (742)
..+...+...++...+.| +......+..+|.. .
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~~g---------------------------------------~~~A~~~lg~~y~~g~~~~ 195 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACDLK---------------------------------------DSPGCFNAGNMYHHGEGAT 195 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---------------------------------------CHHHHHHHHHHHHHTCSSC
T ss_pred CCCcccccccchhhhhcccccc---------------------------------------ccccccchhhhcccCcccc
Confidence 223333344433333322 22233333333332 3
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 044169 572 GKLEIALIFISNLPIKPTAPIWRPLFAACRC----HSDLKMAEFISKQILELDP 621 (742)
Q Consensus 572 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 621 (742)
.++++|+..|++.....++..+..|...|.. ..|.++|.+.++++.+.++
T Consensus 196 ~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 196 KNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 4566666666554433445555555555543 2366677777777766654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.68 E-value=0.00011 Score=58.95 Aligned_cols=87 Identities=8% Similarity=-0.055 Sum_probs=48.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhc
Q 044169 493 MIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRA 571 (742)
Q Consensus 493 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 571 (742)
+...+.+.|++++|+..|++.+.. .|+ ...|..+..++.+.|++++|+..|+...+. .+.+...+..+...|...
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHC
Confidence 344555566666666666666553 343 345555555666666666666666665441 222344555555556666
Q ss_pred CCHHHHHHHHHh
Q 044169 572 GKLEIALIFISN 583 (742)
Q Consensus 572 g~~~~A~~~~~~ 583 (742)
|++++|++.+++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 666666555554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.56 E-value=0.00022 Score=62.46 Aligned_cols=119 Identities=12% Similarity=0.025 Sum_probs=83.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 044169 528 VLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLK 607 (742)
Q Consensus 528 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 607 (742)
........|++++|.+.|.....-+ ++... ..+....-......-++. .....+..+...+...|+++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~---rG~~l-----~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREW---RGPVL-----DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC---CSSTT-----GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC---ccccc-----ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCch
Confidence 3346778889999999888886532 21100 000000011111111111 12456788889999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCC
Q 044169 608 MAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKM-----KEISKE 658 (742)
Q Consensus 608 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-----~~~~~~ 658 (742)
+|...++++++.+|.+...|..++.+|...|++++|.+.|+.+.+ .|+.|.
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 999999999999999999999999999999999999999998753 466443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.46 E-value=0.00011 Score=61.97 Aligned_cols=127 Identities=11% Similarity=0.083 Sum_probs=71.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccC----------cHHHHHHHHHHhHHhcCCCCcHHHHHHHH
Q 044169 497 YSQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSG----------LVQDGQKVFESMVKEYGILPEEAHYSCMV 565 (742)
Q Consensus 497 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g----------~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 565 (742)
|-+.+.+++|+..|++..+. .|+. ..+..+..++...+ .+++|++.|+++++. -+.+...|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHH
Confidence 44556677777777777774 4544 45656665655433 234455555544431 112233444444
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 044169 566 DLLGRAGKLEIALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEE 645 (742)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 645 (742)
.+|...|++. ++... ..+++++|.+.|+++++++|++..++..|.... +|.+
T Consensus 83 ~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~ 134 (145)
T d1zu2a1 83 NAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQ 134 (145)
T ss_dssp HHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHH
T ss_pred HHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHHH
Confidence 4443333210 11110 112468899999999999998887777766553 5666
Q ss_pred HHHHHHhCCC
Q 044169 646 QRKLMKMKEI 655 (742)
Q Consensus 646 ~~~~m~~~~~ 655 (742)
++.++.++|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 6666666654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.00075 Score=55.26 Aligned_cols=59 Identities=10% Similarity=0.053 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 044169 490 WNSMIKAYSQNGRARKAIILFEKMVVEGIRPT-NSTFLAVLSACSHSGLVQDGQKVFESMVK 550 (742)
Q Consensus 490 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 550 (742)
+..+...|.+.|++++|+..|.+.++. .|+ ...+..+..+|.+.|++++|++.++.+++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 344555666666666666666666653 333 34555566666666666666666666543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.41 E-value=8.4e-05 Score=62.76 Aligned_cols=51 Identities=14% Similarity=0.074 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCC-----------HHHHHHHHHHHHhCC
Q 044169 604 SDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGL-----------QADAEEQRKLMKMKE 654 (742)
Q Consensus 604 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~-----------~~~A~~~~~~m~~~~ 654 (742)
+.+++|+..++++++++|+++.+|..++.+|...|+ +++|.+.|++..+..
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 346789999999999999999999999999988764 688888888877544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.00031 Score=54.05 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=54.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 044169 562 SCMVDLLGRAGKLEIALIFISNLP--------IKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSN 632 (742)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 632 (742)
-.+...+.+.|++++|+..|++.. ..++ ..++..+..++.+.|++++|+..++++++++|+++.++..+..
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~ 88 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY 88 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 345566666666666666665432 1222 5678889999999999999999999999999999998888755
Q ss_pred H
Q 044169 633 M 633 (742)
Q Consensus 633 ~ 633 (742)
.
T Consensus 89 ~ 89 (95)
T d1tjca_ 89 F 89 (95)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.32 E-value=0.00038 Score=59.50 Aligned_cols=62 Identities=15% Similarity=-0.062 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------C----CchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 591 PIWRPLFAACRCHSDLKMAEFISKQILELDP-------D----DAAVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 591 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-------~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
..|+.+..++...|++++|...+++++++.| + ...++..++.+|...|++++|.+.|++..+
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888888888888776532 1 223678899999999999999999998774
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.03 E-value=0.0026 Score=53.94 Aligned_cols=63 Identities=11% Similarity=-0.051 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC--------CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 044169 560 HYSCMVDLLGRAGKLEIALIFISNLP--------IKPT-----APIWRPLFAACRCHSDLKMAEFISKQILELDPD 622 (742)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 622 (742)
.|+.+..+|...|++++|++.+++.. ..++ ...+..+..+|...|++++|...+++++++.|+
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45555666666666666655544321 1121 224566777888899999999999998887553
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.00043 Score=72.00 Aligned_cols=260 Identities=7% Similarity=-0.031 Sum_probs=126.3
Q ss_pred HHHHHHHhc-CCCCC-hhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChH-HHHHHHHHhcCCCCHHHHHHHHHHHH
Q 044169 372 EAKKQLKEM-GKSAS-SVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEF-TYSSILKACSLLPSLATCEQIHSRIV 448 (742)
Q Consensus 372 ~A~~~~~~~-~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~i~~~~~ 448 (742)
+|.+.|++. ...|+ ..+|..+...|...|++++| |+++.... |+.. ..+. ....- ...+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~-e~~Lw-~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKV-EQDLW-NHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTH-HHHHH-HHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhH-HHHHH-HHHHHHHHHHHHHhc
Confidence 455566554 11232 44566666777777777765 55554432 2111 0100 00000 011233445555544
Q ss_pred HhCCCCchhHHH--HHHHHHHhcCCHHHHHHHHHhcC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 044169 449 KSKFESNVHVGS--SLIEAYNKCGSWEDAERVFSQLT---AADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNS 523 (742)
Q Consensus 449 ~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 523 (742)
+..-.++..-.. .+...+...+.++.|...+.... .++...|..+...+.+.|+.++|...+++.... .| ..
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~ 153 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QH 153 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HH
Confidence 433233322211 12222334556677776666544 334556777888888888888888887776542 12 24
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 044169 524 TFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP--IKPTAPIWRPLFAACR 601 (742)
Q Consensus 524 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 601 (742)
++..+...+...|++++|...|++..+. .+.+...|+.|+.++...|+..+|+..|.+.. .+|-+.++.+|...+.
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 6777788888889999999999888752 33455688889999999999999988887643 4566778888877665
Q ss_pred HcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 044169 602 CHSDLKMAEFISKQILELDPD---DAAVYVTLSNMYAEAGLQADAEEQRKLM 650 (742)
Q Consensus 602 ~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~g~~~~A~~~~~~m 650 (742)
+..+...+ .+..+. -...+..+...+...+.+++..++.+.+
T Consensus 232 ~~~~~~~~-------~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 232 KALESRDE-------VKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp HHTTSCCC-------CCSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred Hhhhhhhh-------hccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 44321110 001111 1223455555566666666665554433
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.98 E-value=0.00095 Score=62.30 Aligned_cols=124 Identities=15% Similarity=0.094 Sum_probs=78.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCc-HHHHHHHHHHHhhcCCHH
Q 044169 498 SQNGRARKAIILFEKMVVEGIRPTN-STFLAVLSACSHSGLVQDGQKVFESMVKEYGILPE-EAHYSCMVDLLGRAGKLE 575 (742)
Q Consensus 498 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 575 (742)
.+.|++++|+..+++.++. .|+. ..+..+...++..|++++|.+.++...+ ..|+ ...+..+..++...+..+
T Consensus 7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccH
Confidence 3567888888888888774 4544 6677777888888888888888887765 2344 334444555555555555
Q ss_pred HHHHHHHhC--CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 044169 576 IALIFISNL--PIKPT-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAV 626 (742)
Q Consensus 576 ~A~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 626 (742)
++..-.... ...|+ ...+......+...|+.++|...++++.+..|..+..
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 443332221 12232 2233334455777888888888888888888865544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.0016 Score=49.78 Aligned_cols=63 Identities=17% Similarity=-0.027 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------chhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 592 IWRPLFAACRCHSDLKMAEFISKQILELDPDD-------AAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 592 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
.+-.+...+.+.|+++.|+..+++++++.|.+ ..++..|+.+|.+.|++++|.+.++++.+..
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 34467778999999999999999999875432 4579999999999999999999999988643
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.88 E-value=0.013 Score=50.65 Aligned_cols=72 Identities=21% Similarity=0.291 Sum_probs=60.2
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCcHHH
Q 044169 487 VVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRP-TNSTFLAVLSACSHSGLVQDGQKVFESMVK----EYGILPEEAH 560 (742)
Q Consensus 487 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 560 (742)
...+..+...+...|++++|+..++++.+. .| +...|..++.++...|+..+|++.|+++.+ +.|+.|...+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 346777889999999999999999999884 55 457899999999999999999999988743 4689998765
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.71 E-value=0.00075 Score=63.00 Aligned_cols=121 Identities=12% Similarity=0.022 Sum_probs=87.2
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCHHHH
Q 044169 532 CSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEIALIFISNLP-IKPT-APIWRPLFAACRCHSDLKMA 609 (742)
Q Consensus 532 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a 609 (742)
..+.|++++|+..+++.++ .-+.|...+..++.+|+..|++++|.+.++... ..|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 3467999999999999987 445677899999999999999999999999864 4554 55566665555544433333
Q ss_pred HHHHHHHHh-cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 044169 610 EFISKQILE-LDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKE 654 (742)
Q Consensus 610 ~~~~~~~~~-~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 654 (742)
......... .+|++...+...+..+...|++++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 222221111 234445566677888999999999999999887644
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=1.7 Score=43.07 Aligned_cols=54 Identities=9% Similarity=-0.011 Sum_probs=29.5
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcC
Q 044169 361 VDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRND 416 (742)
Q Consensus 361 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 416 (742)
+..+.+.+++......+... +.+...-.....+....|+.++|...+..+-..|
T Consensus 79 l~~L~~~~~w~~~~~~~~~~--p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSPEK--PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHTTCHHHHHHHCCSC--CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHhccCHHHHHHhccCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 44555666665554444321 2233334455666667777777776666554443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.01 E-value=0.19 Score=40.30 Aligned_cols=81 Identities=12% Similarity=-0.052 Sum_probs=48.0
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHh----cCCHHHHH
Q 044169 573 KLEIALIFISNLPIKPTAPIWRPLFAACRC----HSDLKMAEFISKQILELDPDDAAVYVTLSNMYAE----AGLQADAE 644 (742)
Q Consensus 573 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~ 644 (742)
+.++|++++++.....++.....|...|.. ..|.++|.+.++++.+.. ++.....|+.+|.. ..+.++|.
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~ 115 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAV 115 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHH
Confidence 344444444433222233333333333332 345677777777777654 56677778888776 45788888
Q ss_pred HHHHHHHhCCC
Q 044169 645 EQRKLMKMKEI 655 (742)
Q Consensus 645 ~~~~~m~~~~~ 655 (742)
+++++..+.|.
T Consensus 116 ~~~~~Aa~~G~ 126 (133)
T d1klxa_ 116 KTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 88888777664
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.96 E-value=0.56 Score=36.11 Aligned_cols=141 Identities=12% Similarity=0.057 Sum_probs=98.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHHhhcCCHHH
Q 044169 497 YSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEI 576 (742)
Q Consensus 497 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 576 (742)
+.-.|..++..++..+... ..+..-|+.++--....-+-+...++++.+-+-+.+ ..++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl--------------s~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCc--------------hhhhcHHH
Confidence 4456888888888888776 344455666666555566666777777766432222 23444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 044169 577 ALIFISNLPIKPTAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRKLMKMKEIS 656 (742)
Q Consensus 577 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 656 (742)
....+-.+. .+..-....+....++|.-+.-.+++..+++.+.-+|.....++++|-+.|...++-+++.+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 444443332 234455666777888999999999999988865448999999999999999999999999999998874
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.14 E-value=0.29 Score=38.14 Aligned_cols=48 Identities=13% Similarity=-0.015 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044169 605 DLKMAEFISKQILELDPDDA-AVYVTLSNMYAEAGLQADAEEQRKLMKM 652 (742)
Q Consensus 605 ~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 652 (742)
+.++|+.+++.+.+.+|.+. ..+..|+-+|.+.|++++|.+.++.+.+
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34566666666666666443 4556666666666666666666666654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.46 E-value=1.3 Score=35.00 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=22.9
Q ss_pred CcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Q 044169 401 KTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHSRIVKSK 451 (742)
Q Consensus 401 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~~~~~~~ 451 (742)
++++|+.+|++..+.|. ......+ +.....+.++|...+....+.|
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l--~~~~~~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSL--VSNSQINKQKLFQYLSKACELN 53 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHH--HTCTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhh--ccccccCHHHHHHHHhhhhccc
Confidence 45566666666665552 1112222 1233445566666666655544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=90.73 E-value=8.2 Score=37.68 Aligned_cols=352 Identities=7% Similarity=-0.039 Sum_probs=175.5
Q ss_pred HHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCh
Q 044169 257 NALLTMYIKCGMMEDAESVFEGLVQRNVISWTAIINGFKQHGDYEKPLRLVCLMREDG-IDPNEYTFTVALASCASLRNS 335 (742)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~ 335 (742)
...+..+.+.++++.....+..-+ .+...-.....+....|+.++|...+..+=..| ..|+
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~----------------- 137 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN----------------- 137 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT-----------------
T ss_pred HHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch-----------------
Confidence 334556667777777665554322 233334456677777888877777776664443 2222
Q ss_pred hHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHc
Q 044169 336 HMGYMFHAQVIKRGMALGDFVGTAIVDMYSGLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRN 415 (742)
Q Consensus 336 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 415 (742)
....++....+.|. .+...+-.-+......|+...|..+...++ ..........+..... ...+......
T Consensus 138 -~c~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~-~~~~~~~~a~~~l~~~---p~~~~~~~~~---- 207 (450)
T d1qsaa1 138 -ACDKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMP-ADYQTIASAIISLANN---PNTVLTFART---- 207 (450)
T ss_dssp -HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-GGGHHHHHHHHHHHHC---GGGHHHHHHH----
T ss_pred -HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCC-hhHHHHHHHHHHHHhC---hHhHHHHHhc----
Confidence 22233333333332 233333344445555677777777777664 3333333333333221 2222222111
Q ss_pred CCCCChHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhCCCCchhH---HHHHHHHHHhcCCHHHHHHHHHhcC--CCCch
Q 044169 416 DAACDEFTYSSILKACSL--LPSLATCEQIHSRIVKSKFESNVHV---GSSLIEAYNKCGSWEDAERVFSQLT--AADVV 488 (742)
Q Consensus 416 g~~p~~~t~~~ll~~~~~--~g~~~~a~~i~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~ 488 (742)
..++......+..+..+ ..+.+.+...+.............. ...+...+...+..+.+...+.... ..+..
T Consensus 208 -~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~ 286 (450)
T d1qsaa1 208 -TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS 286 (450)
T ss_dssp -SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH
T ss_pred -CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchH
Confidence 11222222222222222 2355666666666554322211111 1111122223455566665555443 22332
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCcHHHHHHHHHHH
Q 044169 489 SWNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLSACSHSGLVQDGQKVFESMVKEYGILPEEAHYSCMVDLL 568 (742)
Q Consensus 489 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 568 (742)
...-.+......+++..+...+..|... ......-..-+..+....|+.++|...|..... .++ .|.-|...
T Consensus 287 ~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~- 358 (450)
T d1qsaa1 287 LIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ- 358 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH-
T ss_pred HHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH-
Confidence 2222344445667888888877776432 111122234456777888888888888887743 233 34444321
Q ss_pred hhcCCHHHHHHHH-HhCCCCCC-HHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 044169 569 GRAGKLEIALIFI-SNLPIKPT-APIW---RPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADA 643 (742)
Q Consensus 569 ~~~g~~~~A~~~~-~~~~~~p~-~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 643 (742)
+.|..- .+- ...+..+. ...- ..-+..+...|....|...+..+.+.. ++.-...++.+..+.|.++.|
T Consensus 359 -~Lg~~~---~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~a 432 (450)
T d1qsaa1 359 -RIGEEY---ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLS 432 (450)
T ss_dssp -HTTCCC---CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHH
T ss_pred -HcCCCC---CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHH
Confidence 112100 000 00111111 1111 122344678899999999888877643 466777888999999999999
Q ss_pred HHHHHHHH
Q 044169 644 EEQRKLMK 651 (742)
Q Consensus 644 ~~~~~~m~ 651 (742)
+.......
T Consensus 433 I~a~~~~~ 440 (450)
T d1qsaa1 433 VQATIAGK 440 (450)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 88776654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.72 E-value=1.5 Score=33.98 Aligned_cols=71 Identities=10% Similarity=0.024 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhcC---CHHHHHHHHHhCC-CCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhHH
Q 044169 558 EAHYSCMVDLLGRAG---KLEIALIFISNLP-IKP-T-APIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYV 628 (742)
Q Consensus 558 ~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 628 (742)
..+--.++-++.+.. +.++++.+++++. ..| + ...|-.|.-+|.+.|++++|.+.++++++.+|++..+..
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 333333444444443 3345666665543 223 3 345667777888899999999999999999998765433
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.60 E-value=2.8 Score=32.14 Aligned_cols=84 Identities=8% Similarity=-0.046 Sum_probs=55.8
Q ss_pred hCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcHHHHHHHHHHhHcCCCCChHHHHHHHHHhcCCCCHHHHHHHHH
Q 044169 366 GLGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSILKACSLLPSLATCEQIHS 445 (742)
Q Consensus 366 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~i~~ 445 (742)
.|+++......+-.++ .+..-.+..+..+.++|+-++-.++++.+.+.+ +|++.....+..+|.+.|+..++.+++.
T Consensus 68 ~C~Nlk~vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~ 144 (161)
T d1wy6a1 68 KCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLI 144 (161)
T ss_dssp GCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 3445555554444442 344455666777778888777777877766644 6777777778888888888888888877
Q ss_pred HHHHhCC
Q 044169 446 RIVKSKF 452 (742)
Q Consensus 446 ~~~~~~~ 452 (742)
++-+.|+
T Consensus 145 ~ACe~G~ 151 (161)
T d1wy6a1 145 EACKKGE 151 (161)
T ss_dssp HHHHTTC
T ss_pred HHHHHhH
Confidence 7777664
|