Citrus Sinensis ID: 044293

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MSAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHcEEEEcccccHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MSAPRVRETInncvsrsqsdsYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLlglskssspiiRTLSLSILLNlslnpdlkqSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAvsapsnpaghHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIgsteaedlagTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKgrsmfske
Flexible Loop (DISEMBL)
msaprvretinncvsrsqsdsyeDQQKALQTLASITRVSPQYRSLLAQTDGAISTLlglskssspIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSteaedlagTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLkgrsmfske
Low Complexity Region (SEG)
MSAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKssspiirtlslsillnlslNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE
Disordered region (IsUnstruct)
**********************************ITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLK********
Disordered Region (DISOPRED)
******RETINNCVSRSQ******QQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDV***RS*****
Disordered Region (DISEMBL)
*********INNC************QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSS********ASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE
Disordered Region (DISPRO)
MSAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGR******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q5VRH9	611	U-box domain-containing p	no	no	0.923	0.356	0.272	2e-11
Q8GUG9	612	U-box domain-containing p	yes	no	0.881	0.339	0.252	1e-10
Q9SNC6	660	U-box domain-containing p	no	no	0.932	0.333	0.255	2e-09
Q9C9A6	628	U-box domain-containing p	no	no	0.898	0.337	0.263	8e-09
Q5XEZ8	707	U-box domain-containing p	no	no	0.911	0.304	0.273	1e-08
Q9FJP6	556	U-box domain-containing p	no	no	0.847	0.359	0.305	4e-07
Q9ZV31	654	U-box domain-containing p	no	no	0.546	0.197	0.312	1e-06
Q8VZ40	632	U-box domain-containing p	no	no	0.889	0.332	0.257	3e-06
Q0IMG9	694	E3 ubiquitin-protein liga	no	no	0.906	0.308	0.262	6e-06
A2ZLU6	694	Protein spotted leaf 11 O	N/A	no	0.906	0.308	0.262	6e-06

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 14  VSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLS 73
           ++R +S + ++Q+ A   +  + + +   R  +A+  GAI  L+ L  SS P  +  +++
Sbjct: 329 MNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEA-GAIPLLVNLLSSSDPRTQEHAVT 387

Query: 74  ILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVA 133
            LLNLS++ + K S+     I ++  ++++ S  ET + A++ + SL+++D+NK   G A
Sbjct: 388 ALLNLSIHENNKASIVDSHAIPKIVEVLKTGS-METRENAAATLFSLSVVDENKVTIGAA 446

Query: 134 GTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIH-LIGSTEAEDL 192
           G +  L+  +   S        +++  L  + GN   AV+AG V  L++ L+  T    +
Sbjct: 447 GAIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGG--M 504

Query: 193 AGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
              +L++L++LA   EG I + +++ I  L V+V+K  S  ++E
Sbjct: 505 IDEALSLLSILAGNPEGKIVIARSEPIPPL-VEVIKTGSPRNRE 547

Possesses E3 ubiquitin-protein ligase in vitro.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 108/210 (51%), Gaps = 2/210 (0%)

Query: 14  VSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLS 73
           V R  S S ED++ A+  + S+++ S   R L+A+  GAI  L+ L  S     +  +++
Sbjct: 337 VQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEA-GAIPVLVNLLTSEDVATQENAIT 395

Query: 74  ILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVA 133
            +LNLS+  + K+ +     +  +  ++++ + +     A++L  SL++ D+NK   G +
Sbjct: 396 CVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLF-SLSLADENKIIIGGS 454

Query: 134 GTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLA 193
           G +  LV  +   +        ++L  L  +HGN   AVRAG V+ L+ ++  +    + 
Sbjct: 455 GAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMV 514

Query: 194 GTSLAVLNLLARFDEGMIALTKTDQIVSLM 223
             +L +L++LA   +   A+ K + + +L+
Sbjct: 515 DEALTILSVLANNQDAKSAIVKANTLPALI 544

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 3/223 (1%)

Query: 1   MSAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS 60
            S+P     I + + R    + EDQ+ A   +  + + +   R  +A+  GAI  L+GL 
Sbjct: 345 FSSPAEANKIEDLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEA-GAIPLLVGLL 403

Query: 61  KSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSL 120
            +    I+  S++ LLNLS+  + K ++ S   I  +  +++  S +     A++L  SL
Sbjct: 404 STPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLF-SL 462

Query: 121 AMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSEL 180
           +++D+NK   G  G +  LV  ++  +        ++L  L  + GN   A+RAG +  L
Sbjct: 463 SVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTL 522

Query: 181 IHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLM 223
             L+ +     +   +LA+L +L+   EG   +  +D + SL+
Sbjct: 523 TRLL-TEPGSGMVDEALAILAILSSHPEGKAIIGSSDAVPSLV 564

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 109/216 (50%), Gaps = 4/216 (1%)

Query: 14  VSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPI-IRTLSL 72
           V +  S S ED++ A+  + S+++ S   R L+A+  GAI  L+ L  S      +  ++
Sbjct: 347 VCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEA-GAIPVLVKLLTSDGDTETQENAV 405

Query: 73  SILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV 132
           + +LNLS+    K+ +     +  +  ++++ S +     A++L  SL++ D+NK   G 
Sbjct: 406 TCILNLSIYEHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLF-SLSLADENKIIIGA 464

Query: 133 AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDL 192
           +G +  LV  +   S        ++L  L  + GN   AVRAG V  L+ ++  + +E +
Sbjct: 465 SGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERM 524

Query: 193 AGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLK 228
           A  +L +L++LA       A+ + + I  L +D L+
Sbjct: 525 ADEALTILSVLASNQVAKTAILRANAIPPL-IDCLQ 559

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 113/219 (51%), Gaps = 4/219 (1%)

Query: 18  QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLN 77
           +S S + Q++A   +  + R S   R ++A+ + AI +L+ L  S+   I+  +++ LLN
Sbjct: 431 KSSSLDTQREATARIRILARNSTDNRIVIARCE-AIPSLVSLLYSTDERIQADAVTCLLN 489

Query: 78  LSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQ 137
           LS+N + K  +A    I  L  ++++   +E    +++ + SL+++++ K   G AG ++
Sbjct: 490 LSINDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKTEIGEAGAIE 549

Query: 138 VLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSL 197
            LV  + + S        ++L  L   H N T  + AGAV  L+ L+    A  +   ++
Sbjct: 550 PLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELMDP--AFGMVEKAV 607

Query: 198 AVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
            VL  LA   EG IA+ +   I  ++V+V++  S   KE
Sbjct: 608 VVLANLATVREGKIAIGEEGGI-PVLVEVVELGSARGKE 645

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FJP6|PUB38_ARATH U-box domain-containing protein 38 OS=Arabidopsis thaliana GN=PUB38 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 108/219 (49%), Gaps = 19/219 (8%)

Query: 24  DQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD 83
           DQ++ L  +  +TR + + R  L  +   +S L  +  S   +++T +L+ L+NLSL  D
Sbjct: 240 DQEQGLIMMRKMTRTNDEARVSLC-SPRILSLLKNMIVSRYSLVQTNALASLVNLSL--D 296

Query: 84  LKQSLASMETIYRLNWI-----IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQV 138
            K  L    TI RL ++     +  S S+E  + A+  I SL++ D NK   GV G +Q 
Sbjct: 297 KKNKL----TIVRLGFVPILIDVLKSGSREAQEHAAGTIFSLSLEDDNKMPIGVLGALQP 352

Query: 139 LVKAV-SAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSL 197
           L+ A+ +A S+   H    +L  L     N +  VR GAV  L  ++ S E+   A  +L
Sbjct: 353 LLHALRAAESDRTRHDSALALYHLTLNQTNRSKLVRLGAVPALFSMVRSGES---ASRAL 409

Query: 198 AVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
            V+  LA   EG  A+   + +  L   V K R  +++E
Sbjct: 410 LVICNLACCSEGRSAMLDANAVAIL---VGKLREEWTEE 445

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 106 SQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH 165
           S E  + A++ + SL+++D+NK   G AG +  LV  +S  S        ++L  L  F 
Sbjct: 453 SMEARENAAATLFSLSVIDENKVTIGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQ 512

Query: 166 GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVD 225
           GN   AVRAG V  L+ L+   E+  +   SL++L +L+   +G   +   D  V ++VD
Sbjct: 513 GNKGKAVRAGLVPVLMRLLTEPES-GMVDESLSILAILSSHPDGKSEVGAAD-AVPVLVD 570

Query: 226 VLKGRSMFSKE 236
            ++  S  +KE
Sbjct: 571 FIRSGSPRNKE 581

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 107/214 (50%), Gaps = 4/214 (1%)

Query: 23  EDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP 82
           E Q+ A   L  + + +   R  +A+  GAI  L+ L  S  P  +  S++ LLNLS+N 
Sbjct: 360 EQQRAAAGELRLLAKRNVDNRVCIAEA-GAIPLLVELLSSPDPRTQEHSVTALLNLSINE 418

Query: 83  DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKA 142
             K ++     I  +  ++++ S +     A++L  SL+++D+NK   G AG +Q L+  
Sbjct: 419 GNKGAIVDAGAITDIVEVLKNGSMEARENAAATLF-SLSVIDENKVAIGAAGAIQALISL 477

Query: 143 VSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNL 202
           +   +        +++  L  + GN + AV+ G V  L  L+       +   +LA+L +
Sbjct: 478 LEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDA-GGGMVDEALAILAI 536

Query: 203 LARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
           L+   EG  A+ + + I  ++V++++  S  ++E
Sbjct: 537 LSTNQEGKTAIAEAESI-PVLVEIIRTGSPRNRE 569

Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 107/217 (49%), Gaps = 3/217 (1%)

Query: 7   RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPI 66
           R  I+  +S+  S   E+Q+ A   L  + + +   R  +A+  GAI  LL L  SS   
Sbjct: 366 RANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEA-GAIPLLLSLLSSSDLR 424

Query: 67  IRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN 126
            +  +++ LLNLS++ D K S+ S   +  +  ++++ S +     A++L  SL+++D+ 
Sbjct: 425 TQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLF-SLSVIDEY 483

Query: 127 KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS 186
           K   G  G +  LV  +   S        ++L  L  + GN   A+RAG V  ++ L+ +
Sbjct: 484 KVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTN 543

Query: 187 TEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLM 223
                L   ++A+L++L+   EG  A+   + +  L+
Sbjct: 544 PTGA-LMDEAMAILSILSSHPEGKAAIGAAEPVPVLV 579

E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 107/217 (49%), Gaps = 3/217 (1%)

Query: 7   RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPI 66
           R  I+  +S+  S   E+Q+ A   L  + + +   R  +A+  GAI  LL L  SS   
Sbjct: 366 RANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEA-GAIPLLLSLLSSSDLR 424

Query: 67  IRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN 126
            +  +++ LLNLS++ D K S+ S   +  +  ++++ S +     A++L  SL+++D+ 
Sbjct: 425 TQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLF-SLSVIDEY 483

Query: 127 KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS 186
           K   G  G +  LV  +   S        ++L  L  + GN   A+RAG V  ++ L+ +
Sbjct: 484 KVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTN 543

Query: 187 TEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLM 223
                L   ++A+L++L+   EG  A+   + +  L+
Sbjct: 544 PTGA-LMDEAMAILSILSSHPEGKAAIGAAEPVPVLV 579

Defense related protein that negatively regulates programmed cell death. In vitro, possesses E3 ubiquitin ligase activity.

Oryza sativa subsp. indica (taxid: 39946)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
255548986	358	conserved hypothetical protein [Ricinus	1.0	0.659	0.699	4e-83
357466295	316	hypothetical protein MTR_3g107650 [Medic	0.983	0.734	0.641	7e-72
449437384	320	PREDICTED: U-box domain-containing prote	0.970	0.715	0.656	2e-71
224089170	386	predicted protein [Populus trichocarpa]	0.855	0.523	0.614	5e-69
297598065	796	Os01g0884400 [Oryza sativa Japonica Grou	0.940	0.278	0.308	4e-13
218189484	867	hypothetical protein OsI_04691 [Oryza sa	0.940	0.256	0.308	4e-13
222619634	959	hypothetical protein OsJ_04318 [Oryza sa	0.940	0.231	0.308	5e-13
356565483	382	PREDICTED: U-box domain-containing prote	0.957	0.591	0.260	1e-11
449464938	671	PREDICTED: U-box domain-containing prote	0.953	0.335	0.282	1e-11
449521425	671	PREDICTED: LOW QUALITY PROTEIN: U-box do	0.953	0.335	0.282	2e-11

>gi|255548986|ref|XP_002515549.1| conserved hypothetical protein [Ricinus communis] gi|223545493|gb|EEF46998.1| conserved hypothetical protein [Ricinus communis]

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 165/236 (69%), Positives = 191/236 (80%)

Query: 1   MSAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS 60
           MS  R RETI  CVS +QSDS E QQKAL TLAS+T+VSP  RSL+AQTDGAIS  L L+
Sbjct: 52  MSIARSRETIAQCVSDAQSDSIEVQQKALHTLASMTKVSPHNRSLVAQTDGAISAFLMLT 111

Query: 61  KSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSL 120
           +SSSPII TL+L+IL NLSLNPDLKQSLA M+TI  LN +I SS S ++ +LASSL+CSL
Sbjct: 112 ESSSPIIETLALAILFNLSLNPDLKQSLADMDTINLLNSVIVSSRSLQSSRLASSLVCSL 171

Query: 121 AMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSEL 180
           AMLDKNKA+FGVAGT+Q+LV AVS P  PA HHLLSSLAELVQFHGN T+AVR+GAV  L
Sbjct: 172 AMLDKNKAKFGVAGTIQILVDAVSGPRGPATHHLLSSLAELVQFHGNCTVAVRSGAVEVL 231

Query: 181 IHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
           I ++ ST  EDLAGTSLA+L LLARF+EG+ AL ++D IVS M DVLKGR M  KE
Sbjct: 232 IRIVESTGGEDLAGTSLAILGLLARFEEGLNALIRSDHIVSCMADVLKGRCMLGKE 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466295|ref|XP_003603432.1| hypothetical protein MTR_3g107650 [Medicago truncatula] gi|355492480|gb|AES73683.1| hypothetical protein MTR_3g107650 [Medicago truncatula]

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 152/237 (64%), Positives = 184/237 (77%), Gaps = 5/237 (2%)

Query: 5   RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSS 64
           RV +TIN C+   QSDS+E Q+K LQTLA++T+VSPQ R+LLAQ DGAISTL  L+ +SS
Sbjct: 10  RVFDTINECLILVQSDSHETQEKGLQTLAAVTKVSPQNRTLLAQIDGAISTLATLTNASS 69

Query: 65  PIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS-SQETVKLASSLICSLAML 123
            II+TLSL +L NLSLN DLKQSLA METIY LN +I SSS S ++ KLASSLICSLAM 
Sbjct: 70  SIIQTLSLLVLFNLSLNLDLKQSLADMETIYHLNSLINSSSCSIDSCKLASSLICSLAMF 129

Query: 124 DKNKARFGVAGTVQVLVKAVSAP--SNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELI 181
           DKNKA+FGVAGTVQ+LVKA+ +    +   HHLLSSLAELVQFHGN TLAVR G V  L+
Sbjct: 130 DKNKAKFGVAGTVQLLVKAIESSLLDSADSHHLLSSLAELVQFHGNCTLAVRGGVVPVLL 189

Query: 182 HLIGSTE--AEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
            ++ ST+   EDLAGTSL VL LL RFDEG+ A+ KT++I+S M+  L+ RS+  KE
Sbjct: 190 QVVQSTDNNNEDLAGTSLTVLGLLVRFDEGLNAVKKTNEIISSMLSALRRRSLLCKE 246

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437384|ref|XP_004136472.1| PREDICTED: U-box domain-containing protein 11-like [Cucumis sativus] gi|449503554|ref|XP_004162060.1| PREDICTED: U-box domain-containing protein 11-like [Cucumis sativus]

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 151/230 (65%), Positives = 188/230 (81%), Gaps = 1/230 (0%)

Query: 7   RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPI 66
            +TI  C++ ++SD++E Q+KALQ L +IT+VSP +R+LL Q DG+ISTL+GLSKSSS  
Sbjct: 21  HKTITECMAGARSDAHEVQEKALQNLVTITQVSPLHRNLLVQVDGSISTLIGLSKSSSST 80

Query: 67  IRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN 126
           I++LSLSIL NLSLN D+K+ LASMETIY LN +I S  S +TVKL+SSLICSLAMLDKN
Sbjct: 81  IQSLSLSILFNLSLNHDMKKLLASMETIYHLNTLI-SLGSPDTVKLSSSLICSLAMLDKN 139

Query: 127 KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS 186
           KA+FGVAGT+Q+LV+A+  P+ PA HHLL SLAEL QFHGN T+AVR+GA+  LI ++ S
Sbjct: 140 KAKFGVAGTIQLLVRALKVPNIPAAHHLLCSLAELGQFHGNCTVAVRSGAIQVLISVVES 199

Query: 187 TEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
           T  EDLAGT+L VL LLARF+EG+ AL KTD+IV  MV+VLKGR M SKE
Sbjct: 200 TSGEDLAGTALVVLGLLARFEEGLRALIKTDRIVISMVNVLKGRCMLSKE 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089170|ref|XP_002308651.1| predicted protein [Populus trichocarpa] gi|222854627|gb|EEE92174.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 145/236 (61%), Positives = 170/236 (72%), Gaps = 34/236 (14%)

Query: 1   MSAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS 60
           MSA R+RETI  C++  QSDS + Q+KALQTLA++T+VSPQ RSLLAQTDG +STLL L+
Sbjct: 113 MSATRLRETITECLADVQSDSVDAQRKALQTLAALTKVSPQNRSLLAQTDGVVSTLLTLT 172

Query: 61  KSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSL 120
           K SS IIR L+LSIL NLSLNPDL                                  +L
Sbjct: 173 KISSSIIRILALSILFNLSLNPDL----------------------------------NL 198

Query: 121 AMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSEL 180
           AMLDKNKA+FGVAGTVQVLV A+S P  PA HHLLSSLAELVQFHGN T+AVR+GAV  L
Sbjct: 199 AMLDKNKAKFGVAGTVQVLVGAISGPRCPASHHLLSSLAELVQFHGNCTVAVRSGAVQVL 258

Query: 181 IHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
           I ++ ST+ EDLAGTSLAVL  LARF+EG+ AL +TDQIVS M++VL+GR M SKE
Sbjct: 259 IGVVESTDGEDLAGTSLAVLGHLARFNEGLNALIRTDQIVSSMLNVLRGRCMLSKE 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297598065|ref|NP_001045017.2| Os01g0884400 [Oryza sativa Japonica Group] gi|56784489|dbj|BAD82582.1| putative arm repeat-containing protein [Oryza sativa Japonica Group] gi|215704196|dbj|BAG93036.1| unnamed protein product [Oryza sativa Japonica Group] gi|255673933|dbj|BAF06931.2| Os01g0884400 [Oryza sativa Japonica Group]

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 10  INNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRT 69
           + N +   +SDS E Q+ A   L  ++R S + R  +A   GAI  L+ L  S+ P  + 
Sbjct: 513 VRNLIEELKSDSAEVQRSATGELRILSRHSLENRIAIANC-GAIPFLVSLLHSTDPSTQE 571

Query: 70  LSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKAR 129
            +++ILLNLSL+ + K ++AS E I  L +++Q  + +     A++L  SL+++++NK +
Sbjct: 572 NAVTILLNLSLDDNNKIAIASAEAIEPLIFVLQVGNPEAKANSAATLF-SLSVIEENKIK 630

Query: 130 FGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEA 189
            G +G ++ LV  +   +        ++L  L  FH + T  V+AGAV+ L+ L+    A
Sbjct: 631 IGRSGAIEPLVDLLGEGTPQGKKDAATALFNLSIFHEHKTRIVQAGAVNHLVELMDP--A 688

Query: 190 EDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
             +   ++AVL  LA   +G  A+ +   I  ++V+V++  S  SKE
Sbjct: 689 AGMVDKAVAVLANLATVHDGRNAIAQAGGI-RVLVEVVELGSARSKE 734

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218189484|gb|EEC71911.1| hypothetical protein OsI_04691 [Oryza sativa Indica Group]

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 10  INNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRT 69
           + N +   +SDS E Q+ A   L  ++R S + R  +A   GAI  L+ L  S+ P  + 
Sbjct: 584 VRNLIEELKSDSAEVQRSATGELRILSRHSLENRIAIANC-GAIPFLVSLLHSTDPSTQE 642

Query: 70  LSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKAR 129
            +++ILLNLSL+ + K ++AS E I  L +++Q  + +     A++L  SL+++++NK +
Sbjct: 643 NAVTILLNLSLDDNNKIAIASAEAIEPLIFVLQVGNPEAKANSAATLF-SLSVIEENKIK 701

Query: 130 FGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEA 189
            G +G ++ LV  +   +        ++L  L  FH + T  V+AGAV+ L+ L+    A
Sbjct: 702 IGRSGAIEPLVDLLGEGTPQGKKDAATALFNLSIFHEHKTRIVQAGAVNHLVELMDP--A 759

Query: 190 EDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
             +   ++AVL  LA   +G  A+ +   I  ++V+V++  S  SKE
Sbjct: 760 AGMVDKAVAVLANLATVHDGRNAIAQAGGI-RVLVEVVELGSARSKE 805

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222619634|gb|EEE55766.1| hypothetical protein OsJ_04318 [Oryza sativa Japonica Group]

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 10  INNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRT 69
           + N +   +SDS E Q+ A   L  ++R S + R  +A   GAI  L+ L  S+ P  + 
Sbjct: 676 VRNLIEELKSDSAEVQRSATGELRILSRHSLENRIAIANC-GAIPFLVSLLHSTDPSTQE 734

Query: 70  LSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKAR 129
            +++ILLNLSL+ + K ++AS E I  L +++Q  + +     A++L  SL+++++NK +
Sbjct: 735 NAVTILLNLSLDDNNKIAIASAEAIEPLIFVLQVGNPEAKANSAATLF-SLSVIEENKIK 793

Query: 130 FGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEA 189
            G +G ++ LV  +   +        ++L  L  FH + T  V+AGAV+ L+ L+    A
Sbjct: 794 IGRSGAIEPLVDLLGEGTPQGKKDAATALFNLSIFHEHKTRIVQAGAVNHLVELMDP--A 851

Query: 190 EDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
             +   ++AVL  LA   +G  A+ +   I  ++V+V++  S  SKE
Sbjct: 852 AGMVDKAVAVLANLATVHDGRNAIAQAGGI-RVLVEVVELGSARSKE 897

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565483|ref|XP_003550969.1| PREDICTED: U-box domain-containing protein 14-like [Glycine max]

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 120/230 (52%), Gaps = 4/230 (1%)

Query: 7   RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPI 66
           R  I   + +  S+  E Q+ A   L  + + +   R  +A+  GAI  L+ L  SS P 
Sbjct: 94  RTAIGALLDKLTSNDIEQQKAAGGELRLLGKRNADNRVCIAEV-GAIPPLVDLLSSSDPQ 152

Query: 67  IRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN 126
            +  +++ LLNLS+N   K ++ ++  I  +  ++++ + +     A++L  SL++LD+N
Sbjct: 153 TQEHAVTALLNLSINESNKGTIVNVGAIPDIVDVLKNGNMEARENAAATLF-SLSVLDEN 211

Query: 127 KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS 186
           K + G AG +  L+K +   +      + +++  L  + GN   AV+AG V+ LI  +  
Sbjct: 212 KVQIGAAGAIPALIKLLCEGTPTGKKDVATAIFNLSIYQGNKAKAVKAGIVAPLIQFLKD 271

Query: 187 TEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
                +   +LA++ +LA   EG +A+ + + I  ++V+V++  S  ++E
Sbjct: 272 A-GGGMVDEALAIMEILASHHEGRVAIGQAEPI-HILVEVIRTGSPRNRE 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464938|ref|XP_004150186.1| PREDICTED: U-box domain-containing protein 13-like [Cucumis sativus]

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 119/230 (51%), Gaps = 5/230 (2%)

Query: 7   RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPI 66
           R  I+  + +  S + EDQ+ A   +  + + +   R  +A+  GAI  L+GL  +    
Sbjct: 354 RTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEA-GAIPLLVGLLSTPDSR 412

Query: 67  IRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN 126
           ++  +++ LLNLS+  D K S+ S   +  +  +++  S +     A++L  SL+++D+N
Sbjct: 413 VQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLF-SLSVIDEN 471

Query: 127 KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS 186
           K R G +G +  LV  +S  +        ++L  L  + GN   AVRAG V  L+ L+  
Sbjct: 472 KVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGRAVRAGVVPTLMQLL-- 529

Query: 187 TEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
           T    +   +LA+L +LA   EG  A+ ++ + V ++VDV+   S  ++E
Sbjct: 530 TPGTGMVDEALAILAILASHSEGKGAI-RSAKAVPVLVDVIGTGSPRNRE 578

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521425|ref|XP_004167730.1| PREDICTED: LOW QUALITY PROTEIN: U-box domain-containing protein 13-like [Cucumis sativus]

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 119/230 (51%), Gaps = 5/230 (2%)

Query: 7   RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPI 66
           R  I+  + +  S + EDQ+ A   +  + + +   R  +A+  GAI  L+GL  +    
Sbjct: 354 RTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEA-GAIPLLVGLLSTPDSR 412

Query: 67  IRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN 126
           ++  +++ LLNLS+  D K S+ S   +  +  +++  S +     A++L  SL+++D+N
Sbjct: 413 VQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLF-SLSVIDEN 471

Query: 127 KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS 186
           K R G +G +  LV  +S  +        ++L  L  + GN   AVRAG V  L+ L+  
Sbjct: 472 KVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGRAVRAGVVPTLMQLL-- 529

Query: 187 TEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
           T    +   +LA+L +LA   EG  A+ ++ + V ++VDV+   S  ++E
Sbjct: 530 TPGTGMVDEALAILAILASHSEGKGAI-RSAKAVPVLVDVIGTGSPRNRE 578

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2130699	472	AT4G16490 "AT4G16490" [Arabido	0.983	0.491	0.25	5.5e-13
TAIR|locus:2017719	612	AT1G23030 [Arabidopsis thalian	0.894	0.344	0.237	1.3e-11
TAIR|locus:2013990	628	AT1G71020 [Arabidopsis thalian	0.919	0.345	0.242	4.8e-11
UNIPROTKB|Q5VRH9	611	PUB12 "U-box domain-containing	0.919	0.355	0.24	5.9e-11
TAIR|locus:2075140	660	PUB13 "plant U-box 13" [Arabid	0.978	0.35	0.225	3.8e-09
UNIPROTKB|Q0IMG9	694	SPL11 "E3 ubiquitin-protein li	0.919	0.312	0.230	1.3e-08
TAIR|locus:2082682	632	PUB14 "plant U-box 14" [Arabid	0.957	0.357	0.208	3.2e-08
TAIR|locus:2158252	707	AT5G67340 [Arabidopsis thalian	0.978	0.326	0.229	3.7e-08
TAIR|locus:2045334	829	PUB4 "plant U-box 4" [Arabidop	0.953	0.271	0.25	1.2e-07
TAIR|locus:2178818	357	AT5G58680 "AT5G58680" [Arabido	0.953	0.630	0.221	8.6e-07

TAIR|locus:2130699 AT4G16490 "AT4G16490" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 5.5e-13, P = 5.5e-13
 Identities = 59/236 (25%), Positives = 106/236 (44%)

Query:     1 MSAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS 60
             +S   ++ T+  C+   +S S   ++ A   L  + +     R L+ ++ GAI  L+ L 
Sbjct:   176 ISPEDLQPTVKLCIDGLRSSSVAIKRSAAAKLRLLAKNRADNRVLIGES-GAIQALIPLL 234

Query:    61 KXXXXXXXXXXXXXXXXXXXNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSL 120
             +                   +   K  +A+   I  L W++++ +       A +L+ SL
Sbjct:   235 RCNDPWTQEHAVTALLNLSLHDQNKAVIAAGGAIKSLVWVLKTGTETSKQNAACALL-SL 293

Query:   121 AMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSEL 180
             A+L++NK   G  G +  LV  +   S       L++L +L     N   AV AGAV  L
Sbjct:   294 ALLEENKGSIGACGAIPPLVSLLLNGSCRGKKDALTTLYKLCTLQQNKERAVTAGAVKPL 353

Query:   181 IHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
             + L+   E   +A  ++ VL+ LA  D+G  A+ +   I +L V+ ++  S+  KE
Sbjct:   354 VDLVAE-EGTGMAEKAMVVLSSLAAIDDGKEAIVEEGGIAAL-VEAIEDGSVKGKE 407

GO:0008150 "biological_process" evidence=ND

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 51/215 (23%), Positives = 99/215 (46%)

Query:    10 INNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKXXXXXXXX 69
             I   V R  S S ED++ A+  + S+++ S   R L+A+  GAI  L+ L          
Sbjct:   333 IRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEA-GAIPVLVNLLTSEDVATQE 391

Query:    70 XXXXXXXXXXXNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKAR 129
                          + K+ +     +  +  ++++ + +     A++L  SL++ D+NK  
Sbjct:   392 NAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLF-SLSLADENKII 450

Query:   130 FGVAGTVQVLVKAVSAPSNPAGHH-LLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTE 188
              G +G +  LV  +     P G     ++L  L  +HGN   AVRAG V+ L+ ++  + 
Sbjct:   451 IGGSGAIPALVDLLEN-GTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDST 509

Query:   189 AEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLM 223
                +   +L +L++LA   +   A+ K + + +L+
Sbjct:   510 RHRMVDEALTILSVLANNQDAKSAIVKANTLPALI 544

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 4.8e-11, P = 4.8e-11
 Identities = 53/219 (24%), Positives = 98/219 (44%)

Query:    10 INNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKXXXXXXXX 69
             I   V +  S S ED++ A+  + S+++ S   R L+A+  GAI  L+ L          
Sbjct:   343 IRALVCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEA-GAIPVLVKLLTSDGDTETQ 401

Query:    70 XXXXXXXXXXXNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKAR 129
                          +  + L  +        ++  + S E  + A++ + SL++ D+NK  
Sbjct:   402 ENAVTCILNLSIYEHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKII 461

Query:   130 FGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEA 189
              G +G +  LV  +   S        ++L  L  + GN   AVRAG V  L+ ++  + +
Sbjct:   462 IGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSS 521

Query:   190 EDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLK 228
             E +A  +L +L++LA       A+ + + I  L +D L+
Sbjct:   522 ERMADEALTILSVLASNQVAKTAILRANAIPPL-IDCLQ 559

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 162 (62.1 bits), Expect = 5.9e-11, P = 5.9e-11
 Identities = 54/225 (24%), Positives = 111/225 (49%)

Query:    14 VSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKXXXXXXXXXXXX 73
             ++R +S + ++Q+ A   +  + + +   R  +A+  GAI  L+ L              
Sbjct:   329 MNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEA-GAIPLLVNLLSSSDPRTQEHAVT 387

Query:    74 XXXXXXXNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVA 133
                    + + K S+     I ++  ++++ S  ET + A++ + SL+++D+NK   G A
Sbjct:   388 ALLNLSIHENNKASIVDSHAIPKIVEVLKTGS-METRENAAATLFSLSVVDENKVTIGAA 446

Query:   134 GTVQVLVKAVSAPSNPAGHH-LLSSLAELVQFHGNSTLAVRAGAVSELIH-LIGSTEAED 191
             G +  L+  +    +P G     +++  L  + GN   AV+AG V  L++ L+  T    
Sbjct:   447 GAIPPLINLL-CDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGG-- 503

Query:   192 LAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
             +   +L++L++LA   EG I + +++ I  L V+V+K  S  ++E
Sbjct:   504 MIDEALSLLSILAGNPEGKIVIARSEPIPPL-VEVIKTGSPRNRE 547

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 53/235 (22%), Positives = 103/235 (43%)

Query:     2 SAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK 61
             S+P     I + + R    + EDQ+ A   +  + + +   R  +A+  GAI  L+GL  
Sbjct:   346 SSPAEANKIEDLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEA-GAIPLLVGLLS 404

Query:    62 XXXXXXXXXXXXXXXXXXXNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLA 121
                                  + K ++ S   I  +  +++  S +     A++L  SL+
Sbjct:   405 TPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLF-SLS 463

Query:   122 MLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELI 181
             ++D+NK   G  G +  LV  ++  +        ++L  L  + GN   A+RAG +  L 
Sbjct:   464 VIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLT 523

Query:   182 HLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
              L+ +     +   +LA+L +L+   EG   +  +D + SL V+ ++  S  ++E
Sbjct:   524 RLL-TEPGSGMVDEALAILAILSSHPEGKAIIGSSDAVPSL-VEFIRTGSPRNRE 576

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 151 (58.2 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 51/221 (23%), Positives = 99/221 (44%)

Query:     7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKXXXXX 66
             R  I+  +S+  S   E+Q+ A   L  + + +   R  +A+  GAI  LL L       
Sbjct:   366 RANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEA-GAIPLLLSLLSSSDLR 424

Query:    67 XXXXXXXXXXXXXXNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN 126
                           + D K S+ S   +  +  ++++ S +     A++L  SL+++D+ 
Sbjct:   425 TQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLF-SLSVIDEY 483

Query:   127 KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS 186
             K   G  G +  LV  +   S        ++L  L  + GN   A+RAG V  ++ L+ +
Sbjct:   484 KVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTN 543

Query:   187 TEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVL 227
                  L   ++A+L++L+   EG  A+   +  V ++V+++
Sbjct:   544 PTGA-LMDEAMAILSILSSHPEGKAAIGAAEP-VPVLVEMI 582

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0048586 "regulation of long-day photoperiodism, flowering" evidence=IMP

TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 48/230 (20%), Positives = 102/230 (44%)

Query:     7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKXXXXX 66
             R  + + + +  + + E Q+ A   L  + + +   R  +A+  GAI  L+ L       
Sbjct:   344 RTFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEA-GAIPLLVELLSSPDPR 402

Query:    67 XXXXXXXXXXXXXXNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN 126
                           N   K ++     I  +  ++++ S +     A++L  SL+++D+N
Sbjct:   403 TQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLF-SLSVIDEN 461

Query:   127 KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS 186
             K   G AG +Q L+  +   +        +++  L  + GN + AV+ G V  L  L+  
Sbjct:   462 KVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKD 521

Query:   187 TEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
                  +   +LA+L +L+   EG  A+ + + I  ++V++++  S  ++E
Sbjct:   522 AGG-GMVDEALAILAILSTNQEGKTAIAEAESI-PVLVEIIRTGSPRNRE 569

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2158252 AT5G67340 [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 54/235 (22%), Positives = 105/235 (44%)

Query:     2 SAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK 61
             S+  +   +   +   +S S + Q++A   +  + R S   R ++A+ + AI +L+ L  
Sbjct:   415 SSSSIETEVKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCE-AIPSLVSLLY 473

Query:    62 XXXXXXXXXXXXXXXXXXXNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLA 121
                                N + K  +A    I  L  ++++   +E    +++ + SL+
Sbjct:   474 STDERIQADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSAATLFSLS 533

Query:   122 MLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELI 181
             ++++ K   G AG ++ LV  + + S        ++L  L   H N T  + AGAV  L+
Sbjct:   534 VIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLV 593

Query:   182 HLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
              L+    A  +   ++ VL  LA   EG IA+ +   I  ++V+V++  S   KE
Sbjct:   594 ELMDP--AFGMVEKAVVVLANLATVREGKIAIGEEGGI-PVLVEVVELGSARGKE 645

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 58/232 (25%), Positives = 105/232 (45%)

Query:     6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKXXXX 65
             V   +   V   +S S + Q++A   L  + + +   R ++  + GAI  L+ L      
Sbjct:   542 VETQVKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNS-GAIVLLVELLYSTDS 600

Query:    66 XXXXXXXXXXXXXXXNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK 125
                            N + K+++A    I  L  ++++ SS+     A++L  SL+++++
Sbjct:   601 ATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLF-SLSVIEE 659

Query:   126 NKARFGVAGTVQVLVKAVSAPSNPAGHH-LLSSLAELVQFHGNSTLAVRAGAVSELIHLI 184
             NK + G +G +  LV  +     P G     ++L  L     N  + V++GAV  LI L+
Sbjct:   660 NKIKIGQSGAIGPLVDLLGN-GTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLM 718

Query:   185 GSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
                 A  +   ++AVL  LA   EG  A+ +   I  L+V+V++  S   KE
Sbjct:   719 DP--AAGMVDKAVAVLANLATIPEGRNAIGQEGGI-PLLVEVVELGSARGKE 767

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2178818 AT5G58680 "AT5G58680" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 8.6e-07, P = 8.6e-07
 Identities = 51/230 (22%), Positives = 101/230 (43%)

Query:     8 ETINNCVSRSQSDS-YEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKXXXXX 66
             + I N ++  +S S  E+Q++A   +  +++  P+ R  LA+  GAI  L+ L       
Sbjct:    60 DVIRNLITHLESSSSIEEQKQAAMEIRLLSKNKPENRIKLAKA-GAIKPLVSLISSSDLQ 118

Query:    67 XXXXXXXXXXXXXXNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN 126
                             + K+ + S   +  L   ++  +       A +L+  L+ +++N
Sbjct:   119 LQEYGVTAVLNLSLCDENKEMIVSSGAVKPLVNALRLGTPTTKENAACALL-RLSQVEEN 177

Query:   127 KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS 186
             K   G +G + +LV  +      A     ++L  L   + N T AV +G +  L+ L+  
Sbjct:   178 KITIGRSGAIPLLVNLLENGGFRAKKDASTALYSLCSTNENKTRAVESGIMKPLVELMID 237

Query:   187 TEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE 236
              E+ D+   S  V+NLL    E   A+ +    V ++V++++  +   KE
Sbjct:   238 FES-DMVDKSAFVMNLLMSAPESKPAVVEEGG-VPVLVEIVEAGTQRQKE 285

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009693 "ethylene biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
pfam05804	708	pfam05804, KAP, Kinesin-associated protein (KAP)	0.004

>gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP)

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 15/179 (8%)

Query: 56  LLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASS 115
           L GL K    ++R ++  +LLNL+ +  ++  +     +  L   +   +S+  + L  S
Sbjct: 251 LKGLIKKQEQLLR-VAFYLLLNLAEDIKVELKMRRKNIVALLVKALDRDNSELLI-LVVS 308

Query: 116 LICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH-----GNSTL 170
            +  L++ D+NK      G ++ L+K       P  H  L ++   + F+     G    
Sbjct: 309 FLKKLSIFDENKNEMEENGIIEKLLKLF-----PCQHEDLLNITLRLLFNLSFDTGLRPK 363

Query: 171 AVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKG 229
            V  G + +L+ L+ +   ++  G +L VL  L+  D+       TD I  LM  VL+G
Sbjct: 364 MVNGGLLPKLVSLLDN---DNHHGIALCVLYHLSCDDKAKSMFAYTDCIPMLMKMVLEG 419

This family consists of several eukaryotic kinesin-associated (KAP) proteins. Kinesins are intracellular multimeric transport motor proteins that move cellular cargo on microtubule tracks. It has been shown that the sea urchin KRP85/95 holoenzyme associates with a KAP115 non-motor protein, forming a heterotrimeric complex in vitro, called the Kinesin-II. Length = 708

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.96
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.95
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.94
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.93
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.93
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.9
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.89
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.88
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.86
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.83
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.77
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.74
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.73
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.7
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.7
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.58
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.56
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.54
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.52
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.51
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.5
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.44
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.42
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.39
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.36
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.35
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.25
KOG4646	173	consensus Uncharacterized conserved protein, conta	99.24
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.18
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.17
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.14
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.1
PRK09687	280	putative lyase; Provisional	99.03
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.02
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.02
PRK09687	280	putative lyase; Provisional	98.94
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.91
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.91
PF05536	543	Neurochondrin: Neurochondrin	98.78
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.72
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.71
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.7
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.65
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.58
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.58
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.56
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.55
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.53
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.52
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.52
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.5
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.42
PF05536	543	Neurochondrin: Neurochondrin	98.4
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.39
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.34
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.3
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.28
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.28
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.28
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.27
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.25
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.24
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.22
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.22
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.21
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.19
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.17
PTZ00429	746	beta-adaptin; Provisional	98.16
PTZ00429	746	beta-adaptin; Provisional	98.15
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.98
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.96
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.96
COG5369	743	Uncharacterized conserved protein [Function unknow	97.95
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.74
COG5369	743	Uncharacterized conserved protein [Function unknow	97.73
KOG3036	293	consensus Protein involved in cell differentiation	97.7
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.62
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.6
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.56
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.54
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	97.53
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.52
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.5
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.49
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.49
TIGR02270	410	conserved hypothetical protein. Members are found	97.48
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.47
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.43
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.42
KOG3036	293	consensus Protein involved in cell differentiation	97.42
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.42
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.41
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.41
TIGR02270	410	conserved hypothetical protein. Members are found	97.35
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.33
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.31
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	97.3
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.3
PF05004	309	IFRD: Interferon-related developmental regulator (	97.18
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.14
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.13
PF08045	257	CDC14: Cell division control protein 14, SIN compo	97.09
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.06
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.03
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.0
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.96
PF07814	361	WAPL: Wings apart-like protein regulation of heter	96.95
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.91
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.84
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	96.84
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.78
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.72
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.7
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.64
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	96.63
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.59
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	96.58
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.58
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.54
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.52
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.5
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.48
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.47
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.45
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.43
KOG0301	745	consensus Phospholipase A2-activating protein (con	96.41
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.4
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.37
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	96.37
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.3
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.2
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.16
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	96.11
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.1
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.08
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.03
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	96.0
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.98
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	95.98
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.9
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	95.8
COG1413	335	FOG: HEAT repeat [Energy production and conversion	95.79
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	95.75
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	95.73
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.72
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.71
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	95.61
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.61
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	95.59
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.57
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.54
KOG1824	1233	consensus TATA-binding protein-interacting protein	95.53
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.51
KOG2933	334	consensus Uncharacterized conserved protein [Funct	95.41
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	95.28
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.22
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	95.09
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.02
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	94.93
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	94.91
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	94.82
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	94.76
KOG2259	823	consensus Uncharacterized conserved protein [Funct	94.58
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.56
PF05004	309	IFRD: Interferon-related developmental regulator (	94.48
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.47
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	94.37
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	94.36
KOG1824	1233	consensus TATA-binding protein-interacting protein	94.24
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	94.17
KOG0414	1251	consensus Chromosome condensation complex Condensi	94.14
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	94.09
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	93.96
KOG2025	892	consensus Chromosome condensation complex Condensi	93.95
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	93.94
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	93.81
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	93.8
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.77
KOG2259	823	consensus Uncharacterized conserved protein [Funct	93.76
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	93.75
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	93.74
KOG2005	878	consensus 26S proteasome regulatory complex, subun	93.7
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	93.54
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	93.51
KOG4653	982	consensus Uncharacterized conserved protein [Funct	93.51
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	93.41
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	93.2
KOG2025	892	consensus Chromosome condensation complex Condensi	93.19
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	92.79
cd03561	133	VHS VHS domain family; The VHS domain is present i	92.78
KOG2137	700	consensus Protein kinase [Signal transduction mech	92.71
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	92.58
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	92.57
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	92.57
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	92.39
KOG2956	516	consensus CLIP-associating protein [General functi	92.3
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	92.1
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	91.94
PF07814	361	WAPL: Wings apart-like protein regulation of heter	91.74
KOG2032	533	consensus Uncharacterized conserved protein [Funct	91.73
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	91.73
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	91.59
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	91.56
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	91.08
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	90.97
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	90.94
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	90.67
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	90.59
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	90.37
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	90.13
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	90.01
KOG0414	1251	consensus Chromosome condensation complex Condensi	89.94
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	89.91
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	89.31
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	89.26
KOG2032	533	consensus Uncharacterized conserved protein [Funct	88.73
KOG2137	700	consensus Protein kinase [Signal transduction mech	88.68
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	88.66
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	88.24
PF04499	475	SAPS: SIT4 phosphatase-associated protein; InterPr	88.14
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	88.02
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	87.48
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	87.17
KOG1243	690	consensus Protein kinase [General function predict	87.16
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	87.02
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	86.96
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	86.61
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	86.39
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	85.99
COG5098	1128	Chromosome condensation complex Condensin, subunit	85.98
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	85.26
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	84.7
PF08216	108	CTNNBL: Catenin-beta-like, Arm-motif containing nu	84.38
KOG2062	929	consensus 26S proteasome regulatory complex, subun	84.18
KOG0301	745	consensus Phospholipase A2-activating protein (con	83.91
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	83.83
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	82.99
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	82.85
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	82.73
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	82.3
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	81.88
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	80.35

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.96  E-value=4.7e-28  Score=234.41  Aligned_cols=226  Identities=18%  Similarity=0.202  Sum_probs=192.7

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      .++||.|+++|+++++..|..|++.|++++..+++++..+.++ |+||.|+++|++++++++++|+++|.|++.++++++
T Consensus       445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIiea-GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir  523 (2102)
T PLN03200        445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAA-GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR  523 (2102)
T ss_pred             cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence            4589999999999999999999999999999888999999998 999999999999999999999999999999887755


Q ss_pred             Hhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchh---------------------------------------
Q 044293           87 SLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN---------------------------------------  126 (236)
Q Consensus        87 ~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~---------------------------------------  126 (236)
                      .++ +.|++++|+++|+++ +.+.++.|+++|++|+...++                                       
T Consensus       524 ~iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~  602 (2102)
T PLN03200        524 ACVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVR  602 (2102)
T ss_pred             HHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHH
Confidence            544 789999999999998 899999999999998532111                                       


Q ss_pred             -----------------------------------------hhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC-
Q 044293          127 -----------------------------------------KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF-  164 (236)
Q Consensus       127 -----------------------------------------~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~-  164 (236)
                                                               ...+...|+||+|+.+|++++.++++.++++|.+++.+ 
T Consensus       603 ~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~  682 (2102)
T PLN03200        603 EGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI  682 (2102)
T ss_pred             HhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC
Confidence                                                     11122345666666666666666777788888899863 


Q ss_pred             -CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhCCcccccC
Q 044293          165 -HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSMFSKE  236 (236)
Q Consensus       165 -~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~~~~~~k~  236 (236)
                       ++++..+++.|++|+|+++|++.+ .++.+.|+.+|.|++.+++++.++.++|+ +++|+++|+.|++.+||
T Consensus       683 ~~~q~~~~v~~GaV~pL~~LL~~~d-~~v~e~Al~ALanLl~~~e~~~ei~~~~~-I~~Lv~lLr~G~~~~k~  753 (2102)
T PLN03200        683 KENRKVSYAAEDAIKPLIKLAKSSS-IEVAEQAVCALANLLSDPEVAAEALAEDI-ILPLTRVLREGTLEGKR  753 (2102)
T ss_pred             CHHHHHHHHHcCCHHHHHHHHhCCC-hHHHHHHHHHHHHHHcCchHHHHHHhcCc-HHHHHHHHHhCChHHHH
Confidence             345677899999999999999874 78999999999999999999999999998 89999999999998875

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.95  E-value=2.5e-26  Score=222.60  Aligned_cols=227  Identities=17%  Similarity=0.208  Sum_probs=201.4

Q ss_pred             chHHHhHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC
Q 044293            3 APRVRETINNCVSRSQSD--SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL   80 (236)
Q Consensus         3 ~~~~~~~i~~lv~~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~   80 (236)
                      ++.+...+..+++.|+++  +++.+++++..|+.+++.++++|..+.+..|+||.|+.+|+++++.++++++.+|.+++.
T Consensus         8 ~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~   87 (2102)
T PLN03200          8 PDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCK   87 (2102)
T ss_pred             ccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence            456688999999999866  788999999999999999999999999755999999999999999999999999999999


Q ss_pred             CCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhccc---chhhhhh-cccCcHHHHHHhhcCCCc---HHHHH
Q 044293           81 NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAML---DKNKARF-GVAGTVQVLVKAVSAPSN---PAGHH  153 (236)
Q Consensus        81 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~---~~~~~~i-~~~g~i~~Lv~lL~~~~~---~~~~~  153 (236)
                      ++++|..|+..|+||+|+++|+++ +.+.+++|+++|++|+.+   +.++..+ ...|+||+|+.++++++.   .+++.
T Consensus        88 ~e~nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~  166 (2102)
T PLN03200         88 EEDLRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGL  166 (2102)
T ss_pred             CHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHH
Confidence            999999999999999999999999 899999999999999987   4455454 469999999999998742   24577


Q ss_pred             HHHHHHHHhcCCCChHH-HHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC-hhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293          154 LLSSLAELVQFHGNSTL-AVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF-DEGMIALTKTDQIVSLMVDVLKGRS  231 (236)
Q Consensus       154 a~~aL~~L~~~~~~~~~-~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~~i~~lv~~l~~~~  231 (236)
                      ++.+|++||.+++++.. +++.|++|.++.+|++++ +..+..|+.+|.+++.+ ++.+..+++.|+ ||.|++++++++
T Consensus       167 Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d-~~lQ~eAa~aLa~Lass~ee~~~aVIeaGa-VP~LV~LL~sg~  244 (2102)
T PLN03200        167 LTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGN-SDAQANAASLLARLMMAFESSISKVLDAGA-VKQLLKLLGQGN  244 (2102)
T ss_pred             HHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHCCC-HHHHHHHHccCC
Confidence            78999999999998854 589999999999999874 78999999999888854 789999999997 899999998765


Q ss_pred             c
Q 044293          232 M  232 (236)
Q Consensus       232 ~  232 (236)
                      +
T Consensus       245 ~  245 (2102)
T PLN03200        245 E  245 (2102)
T ss_pred             C
Confidence            4

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.6e-25  Score=183.02  Aligned_cols=222  Identities=17%  Similarity=0.251  Sum_probs=204.7

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      .+.+.-+..+-++.+-.+|.+++.+|.+++.. .++|+.++.+ |++|.||+++++++.++|.-++.++.|++-+..+|+
T Consensus       166 sGaL~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~a-G~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk  243 (550)
T KOG4224|consen  166 SGALEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHA-GGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK  243 (550)
T ss_pred             ccchhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhcc-CCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence            45566666755778888999999999999886 6899999998 999999999999999999999999999999999999


Q ss_pred             Hhhhcc--cHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293           87 SLASME--TIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF  164 (236)
Q Consensus        87 ~i~~~g--~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~  164 (236)
                      .+++.+  .+|.|+++++++ ++.++-.|..+|.+++.+.++...+++.|++|.++++|+++.-+..-..+.|++|++.+
T Consensus       244 ~Laqaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih  322 (550)
T KOG4224|consen  244 ILAQAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH  322 (550)
T ss_pred             HHHhcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence            999776  999999999999 89999999999999999999999999999999999999998888888889999999999


Q ss_pred             CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293          165 HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       165 ~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                      +-|--.++++|.+.+|+.+|..+++++++-+|..+|.||+. ...++..|.+.|+ ||.+.+++..++.
T Consensus       323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgA-i~kl~eL~lD~pv  390 (550)
T KOG4224|consen  323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGA-IPKLIELLLDGPV  390 (550)
T ss_pred             cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCc-hHHHHHHHhcCCh
Confidence            99999999999999999999998878899999999999997 6689999999998 8999999887763

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=5.1e-25  Score=189.60  Aligned_cols=220  Identities=15%  Similarity=0.194  Sum_probs=194.7

Q ss_pred             HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch-
Q 044293            7 RETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL-   84 (236)
Q Consensus         7 ~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-   84 (236)
                      .+.||.+|+.|. ..++..|..|+|+|.+.+..+.+....++++ |++|.|+.++.+++..+++.|.++|.|++.+... 
T Consensus       108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~a-gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDA-GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccC-CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH
Confidence            478999999997 5569999999999999999988889999998 9999999999999999999999999999999865 


Q ss_pred             hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293           85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~  163 (236)
                      |..+.+.|++++|+.++.......+.++++|+|.|||........+.. ..++|.|..++.+.++.+...|+|++++|+.
T Consensus       187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd  266 (514)
T KOG0166|consen  187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD  266 (514)
T ss_pred             HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence            888889999999999999873347889999999999998876666665 7899999999999999999999999999998


Q ss_pred             CCCC-hHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh-hhHHHHHhcCCcHHHHHHHhhC
Q 044293          164 FHGN-STLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD-EGMIALTKTDQIVSLMVDVLKG  229 (236)
Q Consensus       164 ~~~~-~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~~i~~lv~~l~~  229 (236)
                      ++.. .+.+++.|++|.|+++|...+ ..++..|++++.|++.+. +..+.+..+|+ +|.|..++.+
T Consensus       267 g~ne~iq~vi~~gvv~~LV~lL~~~~-~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~-L~~l~~ll~~  332 (514)
T KOG0166|consen  267 GSNEKIQMVIDAGVVPRLVDLLGHSS-PKVVTPALRAIGNIVTGSDEQTQVVINSGA-LPVLSNLLSS  332 (514)
T ss_pred             CChHHHHHHHHccchHHHHHHHcCCC-cccccHHHhhccceeeccHHHHHHHHhcCh-HHHHHHHhcc
Confidence            6654 555688999999999999874 668889999999998655 56666778886 8999999874

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.8e-26  Score=186.00  Aligned_cols=219  Identities=15%  Similarity=0.133  Sum_probs=202.8

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      ++.++...-++++.++.+|+.|..++.+++.+ .+++-.+++. +|++.|+.-...+..++|.++..+++|++..+++|.
T Consensus        84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn-~enk~liv~l-~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~  161 (550)
T KOG4224|consen   84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVN-MENKGLIVSL-LGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKV  161 (550)
T ss_pred             hhhhhHHHHHHhCcchhhhhhhhhhhccceec-cCCceEEEec-cChHHHHHHhcCCCcEEEeeehhhhhhhhccccchh
Confidence            45666777788999999999999999999987 5789999999 999999988878888999999999999999999999


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG  166 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~  166 (236)
                      .|...|++.+++++-++. +.-+++++.++|.|++...+|++.++..|++|.||.++.+++.+++.+|+.++.+++....
T Consensus       162 kiA~sGaL~pltrLaksk-dirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~  240 (550)
T KOG4224|consen  162 KIARSGALEPLTRLAKSK-DIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR  240 (550)
T ss_pred             hhhhccchhhhHhhcccc-hhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH
Confidence            999999999999976666 8899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHhC--cHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhCC
Q 044293          167 NSTLAVRAG--AVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGR  230 (236)
Q Consensus       167 ~~~~~~~~g--~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~~  230 (236)
                      +|+.+.+.|  ++|.|++++.+++ +.++-+|--+|.|++.+.+.+..+++.|+ +|.+++++++.
T Consensus       241 ~Rk~Laqaep~lv~~Lv~Lmd~~s-~kvkcqA~lALrnlasdt~Yq~eiv~ag~-lP~lv~Llqs~  304 (550)
T KOG4224|consen  241 ARKILAQAEPKLVPALVDLMDDGS-DKVKCQAGLALRNLASDTEYQREIVEAGS-LPLLVELLQSP  304 (550)
T ss_pred             HHHHHHhcccchHHHHHHHHhCCC-hHHHHHHHHHHhhhcccchhhhHHHhcCC-chHHHHHHhCc
Confidence            999999988  9999999999985 67778899999999999999999999998 79999999764

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.7e-22  Score=174.14  Aligned_cols=222  Identities=18%  Similarity=0.210  Sum_probs=194.3

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCCh-HHHHHHHHHHHhhCCCCchhH
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSP-IIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      +.+|.++.++.+++.+++++|+|+|.+.+.+++..|..+... |++++|+.++...++ ...++++|+|.|||.+.+--.
T Consensus       152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~-g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P  230 (514)
T KOG0166|consen  152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSC-GALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSP  230 (514)
T ss_pred             CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhh-cchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCC
Confidence            578999999999999999999999999999999999999998 999999999988776 678899999999999886544


Q ss_pred             Hhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch-hhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293           87 SLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK-NKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF  164 (236)
Q Consensus        87 ~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~  164 (236)
                      .+. -...+|.|.+++++. |+++...|+|+|.+|+.... .-+.+.+.|++|.|+.+|.+.++.++..|++++.|+..+
T Consensus       231 ~~~~v~~iLp~L~~ll~~~-D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG  309 (514)
T KOG0166|consen  231 PFDVVAPILPALLRLLHST-DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG  309 (514)
T ss_pred             cHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec
Confidence            433 467999999999999 89999999999999997664 445556799999999999999999999999999999998


Q ss_pred             CCChHH-HHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293          165 HGNSTL-AVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       165 ~~~~~~-~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                      .+...+ ++..|++|.|..++..+....+++.|++++.|++. +++-...+...| ++|.|+++|+.+..
T Consensus       310 ~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~-l~p~Li~~l~~~ef  378 (514)
T KOG0166|consen  310 SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDAN-LIPVLINLLQTAEF  378 (514)
T ss_pred             cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcc-cHHHHHHHHhccch
Confidence            877766 56799999999999865445588899999999985 567888888887 79999999988763

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.89  E-value=5.7e-23  Score=166.89  Aligned_cols=227  Identities=12%  Similarity=0.122  Sum_probs=189.4

Q ss_pred             HhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch-
Q 044293            7 RETINNCVSRSQS-DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL-   84 (236)
Q Consensus         7 ~~~i~~lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-   84 (236)
                      -+.+|++|+++.. .....+.+|+|+|.+.+.........++++ |++|.++++|.+++.++++.+.|+|.|++.+... 
T Consensus       113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~-~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~  191 (526)
T COG5064         113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDA-GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC  191 (526)
T ss_pred             ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeC-CchHHHHHHHcCchHHHHHHHHHHhccccCCchhH
Confidence            3578999999954 445578899999999999866666777888 9999999999999999999999999999999876 


Q ss_pred             hHHhhhcccHHHHHHHHhccC-CHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293           85 KQSLASMETIYRLNWIIQSSS-SQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLAELV  162 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~  162 (236)
                      |+.+.+.|.+++++.++.++. +..+.+++.|+|.|||........-.. ..++|.|.+++.+.++++...|+|++.+|+
T Consensus       192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls  271 (526)
T COG5064         192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS  271 (526)
T ss_pred             HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence            777889999999999999773 358889999999999987643322222 567999999999999999999999999999


Q ss_pred             cCCCChHH-HHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh-hhHHHHHhcCCcHHHHHHHhhC-CcccccC
Q 044293          163 QFHGNSTL-AVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD-EGMIALTKTDQIVSLMVDVLKG-RSMFSKE  236 (236)
Q Consensus       163 ~~~~~~~~-~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~~i~~lv~~l~~-~~~~~k~  236 (236)
                      ..+..+.. ++..|..+.|+++|.+.+ ..++..|++...|+.... +....+.++|. ++.+-.+|.+ ...++||
T Consensus       272 Dg~~E~i~avld~g~~~RLvElLs~~s-a~iqtPalR~vGNIVTG~D~QTqviI~~G~-L~a~~~lLs~~ke~irKE  346 (526)
T COG5064         272 DGPNEKIQAVLDVGIPGRLVELLSHES-AKIQTPALRSVGNIVTGSDDQTQVIINCGA-LKAFRSLLSSPKENIRKE  346 (526)
T ss_pred             cCcHHHHHHHHhcCCcHHHHHHhcCcc-ccccCHHHHhhcCeeecCccceehheeccc-HHHHHHHhcChhhhhhhh
Confidence            98876655 567999999999999874 678899999999998765 45556778886 7999888876 3355554

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.88  E-value=5.2e-21  Score=172.64  Aligned_cols=217  Identities=16%  Similarity=0.207  Sum_probs=187.4

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      .+.-+++-.+++..+ ...+.+...|.+++.+ ..+...+.+. |+|+.|+.+|++++.++...++.+|.+||.+++||.
T Consensus       249 ~~~~kk~~~l~~kQe-qLlrv~~~lLlNLAed-~~ve~kM~~~-~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~  325 (708)
T PF05804_consen  249 EKELKKLQTLIRKQE-QLLRVAFYLLLNLAED-PRVELKMVNK-GIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKD  325 (708)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcC-hHHHHHHHhc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            344444445554433 4455678889999987 6788999987 999999999999999999999999999999999999


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG  166 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~  166 (236)
                      .+.+.|++++|.++++++ +.+++..+.++|+|||.+++.|..+.+.|++|.|+.+|.+++  .+..++..|+++|..++
T Consensus       326 ~m~~~giV~kL~kLl~s~-~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~  402 (708)
T PF05804_consen  326 EMAESGIVEKLLKLLPSE-NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDE  402 (708)
T ss_pred             HHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHh
Confidence            999999999999999998 899999999999999999999999999999999999998764  55678999999999999


Q ss_pred             ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHH-HhhCC
Q 044293          167 NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVD-VLKGR  230 (236)
Q Consensus       167 ~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~-~l~~~  230 (236)
                      +|..+...+++|.+++++-.++.+++....+..+.|++.++.+.+.+.+.+| ++.|++ .++..
T Consensus       403 ~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~g-L~~L~~ra~~~~  466 (708)
T PF05804_consen  403 ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNG-LQSLMKRALKTR  466 (708)
T ss_pred             hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCc-HHHHHHHHHhcc
Confidence            9999999999999999886654456666788999999999999999998887 798887 44443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.86  E-value=3.5e-20  Score=167.28  Aligned_cols=220  Identities=19%  Similarity=0.294  Sum_probs=186.1

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      ++.|+.|++.|++++.+...-++..|.+++.. .+|+..+.+. |+|+.|+.++.+++.+.+..++.+|+|||.+++.|.
T Consensus       289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~-giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~  366 (708)
T PF05804_consen  289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAES-GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS  366 (708)
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHc-CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence            56899999999999999999999999999987 6799999998 999999999999999999999999999999999999


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC-CcHHHHHHHHHHHHHhcCC
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP-SNPAGHHLLSSLAELVQFH  165 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~~  165 (236)
                      .+++.|++|+|+.+|+.+   ..+..+..+|.++|.++++|..+...+++|.+++++.+. ++.+...++..+.||+.++
T Consensus       367 ~mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~  443 (708)
T PF05804_consen  367 QMVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK  443 (708)
T ss_pred             HHHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence            999999999999999854   566779999999999999999999999999999988764 4445556677778888888


Q ss_pred             CChHHHHHhCcHHHHHH-------------------------------------HhcCCChhhHHHHHHHHHHHHcCChh
Q 044293          166 GNSTLAVRAGAVSELIH-------------------------------------LIGSTEAEDLAGTSLAVLNLLARFDE  208 (236)
Q Consensus       166 ~~~~~~~~~g~i~~lv~-------------------------------------ll~~~~~~~~~~~a~~~L~~l~~~~~  208 (236)
                      +|.+.+++.|+++.|++                                     ++..+++++..-.|+++|.||...+.
T Consensus       444 rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~l  523 (708)
T PF05804_consen  444 RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDL  523 (708)
T ss_pred             HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCc
Confidence            88888877777665544                                     33333345677789999999987776


Q ss_pred             hHHHHHhcCCcHHHHHHHhhCCc
Q 044293          209 GMIALTKTDQIVSLMVDVLKGRS  231 (236)
Q Consensus       209 ~~~~i~~~g~~i~~lv~~l~~~~  231 (236)
                      ...++++..+++|.+.+.|+.|.
T Consensus       524 d~~~ll~~~~llp~L~~~L~~g~  546 (708)
T PF05804_consen  524 DWAQLLQEYNLLPWLKDLLKPGA  546 (708)
T ss_pred             CHHHHHHhCCHHHHHHHHhCCCC
Confidence            77777765557899999987664

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.83  E-value=6.8e-20  Score=149.08  Aligned_cols=216  Identities=20%  Similarity=0.187  Sum_probs=186.5

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCCh--HHHHHHHHHHHhhCCCCch-
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSP--IIRTLSLSILLNLSLNPDL-   84 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~--~~~~~a~~~L~~l~~~~~~-   84 (236)
                      +.+|.++++|.+++.+++.+++|+|.+.+.+++..|..+.+. |++++++.+|.+..+  ...+++.|.|.|||....- 
T Consensus       157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~-galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~  235 (526)
T COG5064         157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQC-GALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP  235 (526)
T ss_pred             CchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhc-CchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence            578999999999999999999999999999999999999998 999999999887654  6788999999999986433 


Q ss_pred             --hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhh-hhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293           85 --KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNK-ARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL  161 (236)
Q Consensus        85 --~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L  161 (236)
                        -..+  .-.+|.|.+++.+- |+++...|+|+|.+|+..+..+ ..+.+.|..+.|+.+|.+++..++..+++.+.|+
T Consensus       236 P~w~~i--sqalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNI  312 (526)
T COG5064         236 PDWSNI--SQALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNI  312 (526)
T ss_pred             CchHHH--HHHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCe
Confidence              2333  34789999999988 8999999999999999988545 4555799999999999999988999999999999


Q ss_pred             hcCCCChHH-HHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhC
Q 044293          162 VQFHGNSTL-AVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKG  229 (236)
Q Consensus       162 ~~~~~~~~~-~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~  229 (236)
                      ....+...+ ++..|+++.+-.+|.+. ...+++.|++++.|++. +.+..+.+.+.. ++|+|+++|..
T Consensus       313 VTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~n-liPpLi~lls~  380 (526)
T COG5064         313 VTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDAN-LIPPLIHLLSS  380 (526)
T ss_pred             eecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcc-cchHHHHHHHH
Confidence            997766665 57899999999999887 36899999999999985 556667777776 79999999865

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.77  E-value=6.3e-17  Score=130.81  Aligned_cols=194  Identities=19%  Similarity=0.206  Sum_probs=170.4

Q ss_pred             HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293            7 RETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK   85 (236)
Q Consensus         7 ~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~   85 (236)
                      .+.++.|+.+|+ +.++.++++++.++.+.+.. +.++..+.+. |+++.+..+|+++++.+++.|+.+|.|++.+.+|+
T Consensus        11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~-Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen   11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDL-GGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHc-CCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            356799999998 56899999999999998776 6899999998 99999999999999999999999999999999998


Q ss_pred             HHhhhcccHHHHHHHHhcc-CCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293           86 QSLASMETIYRLNWIIQSS-SSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF  164 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~  164 (236)
                      ..|..  .++.+.....+. .+.+++..+.++|.+|+..+++...+.  +.++.++.+|.+++..++..++++|.||+..
T Consensus        89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n  164 (254)
T PF04826_consen   89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN  164 (254)
T ss_pred             HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence            88753  477777755543 367889999999999999888776664  5799999999999999999999999999999


Q ss_pred             CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293          165 HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       165 ~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~  206 (236)
                      +.....++.+.+++.++.+++.+...++...++..+.|+..+
T Consensus       165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            999999999999999999998875577888999999999543

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.74  E-value=2.4e-17  Score=146.63  Aligned_cols=198  Identities=16%  Similarity=0.173  Sum_probs=171.1

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC---c
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP---D   83 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~---~   83 (236)
                      ...+|+.++||.+.++.+|..|+..++.+|+.+.+.|..+.+. |+|+.||.+|.+...+++..|+++|.||....   +
T Consensus       232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrql-ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~  310 (717)
T KOG1048|consen  232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQL-GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS  310 (717)
T ss_pred             ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHh-ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence            4578999999999999999999999999999999999999999 99999999999999999999999999998764   4


Q ss_pred             hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC--------------CcH
Q 044293           84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP--------------SNP  149 (236)
Q Consensus        84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--------------~~~  149 (236)
                      ||..|.+.++|+.++.+|+...|.++++..+++||||+.+|..|..+.. .+++.|..-+-.+              ...
T Consensus       311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~  389 (717)
T KOG1048|consen  311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDST  389 (717)
T ss_pred             cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccce
Confidence            7899999999999999999755899999999999999999888887764 5677777655321              124


Q ss_pred             HHHHHHHHHHHHhc-CCCChHHHHH-hCcHHHHHHHhcCC-----ChhhHHHHHHHHHHHHcCC
Q 044293          150 AGHHLLSSLAELVQ-FHGNSTLAVR-AGAVSELIHLIGST-----EAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       150 ~~~~a~~aL~~L~~-~~~~~~~~~~-~g~i~~lv~ll~~~-----~~~~~~~~a~~~L~~l~~~  206 (236)
                      +..++..+|+|++. ..+.|++|.+ .|.|..|+..++..     .+....++|+++|.||+..
T Consensus       390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYr  453 (717)
T KOG1048|consen  390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYR  453 (717)
T ss_pred             eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCch
Confidence            56899999999998 7789999988 68999999988731     1245679999999999864

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=8.5e-16  Score=125.08  Aligned_cols=221  Identities=15%  Similarity=0.174  Sum_probs=189.0

Q ss_pred             HHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhhCCCCchh
Q 044293            9 TINNCVSRSQ--SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNLSLNPDLK   85 (236)
Q Consensus         9 ~i~~lv~~L~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~   85 (236)
                      +...++++|.  .++.++.......++.-|..++.||+.|.+. ++.|.+.+.|... ..++.+...++++.|..+++.|
T Consensus       146 g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~-~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiR  224 (461)
T KOG4199|consen  146 AMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMEL-KILELILQVLNREGKTRTVRELYDAIRALLTDDDIR  224 (461)
T ss_pred             cHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHh-hHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCcee
Confidence            5566788884  5677788889999999998899999999999 9999999777654 3457788999999998887765


Q ss_pred             H----------HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcH----HH
Q 044293           86 Q----------SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNP----AG  151 (236)
Q Consensus        86 ~----------~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~----~~  151 (236)
                      -          .|++.|++..|+..++-+-++++...++.+|..|+..++.+..|.+.|++..|++.+.+.+..    ..
T Consensus       225 V~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~  304 (461)
T KOG4199|consen  225 VVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLA  304 (461)
T ss_pred             eecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHH
Confidence            3          466778999999999988789999999999999999999999999999999999999885432    44


Q ss_pred             HHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhc-CCChhhHHHHHHHHHHHHc-CChhhHHHHHhcCCcHHHHHHHhhC
Q 044293          152 HHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIG-STEAEDLAGTSLAVLNLLA-RFDEGMIALTKTDQIVSLMVDVLKG  229 (236)
Q Consensus       152 ~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~-~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g~~i~~lv~~l~~  229 (236)
                      +.+++.|+.|+.++.++..+++.|+.+.++.++- ..++|.+.+.++.+++.|| +.|+.-..+++.|+ ....++.|+.
T Consensus       305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~-a~~avqAmka  383 (461)
T KOG4199|consen  305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGA-ADLAVQAMKA  383 (461)
T ss_pred             HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcch-HHHHHHHHHh
Confidence            7888999999999999999999999999999984 4456889999999999998 68999999999887 6888888876


Q ss_pred             Cc
Q 044293          230 RS  231 (236)
Q Consensus       230 ~~  231 (236)
                      ..
T Consensus       384 hP  385 (461)
T KOG4199|consen  384 HP  385 (461)
T ss_pred             Cc
Confidence            53

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=3.2e-15  Score=121.73  Aligned_cols=216  Identities=14%  Similarity=0.137  Sum_probs=178.7

Q ss_pred             HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCh---------HHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhh
Q 044293           10 INNCVSRSQ-SDSYEDQQKALQTLASITRVSP---------QYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNL   78 (236)
Q Consensus        10 i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~---------~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l   78 (236)
                      .+.+.+.|. .+.....+.++++++.+..+++         ...+.|.+. |+...|++.++-. +|......+.+|..+
T Consensus       191 l~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e-~~l~~L~Eal~A~~dp~~L~~l~~tl~~l  269 (461)
T KOG4199|consen  191 LELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKE-GILTALTEALQAGIDPDSLVSLSTTLKAL  269 (461)
T ss_pred             HHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHh-hhHHHHHHHHHccCCccHHHHHHHHHHHH
Confidence            344454664 3444678889999999887653         355677776 8999999998753 688888899999999


Q ss_pred             CCCCchhHHhhhcccHHHHHHHHhccCCHHHH---HHHHHHHHHhcccchhhhhhcccCcHHHHHHhhc--CCCcHHHHH
Q 044293           79 SLNPDLKQSLASMETIYRLNWIIQSSSSQETV---KLASSLICSLAMLDKNKARFGVAGTVQVLVKAVS--APSNPAGHH  153 (236)
Q Consensus        79 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~---~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~  153 (236)
                      +-.++.+..|.+.||+..|+.++.++++.+.+   +.++++|..|+..+++|..|++.|+.+.++.++.  +.+|.+.+.
T Consensus       270 AVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~  349 (461)
T KOG4199|consen  270 AVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQE  349 (461)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHH
Confidence            99999999999999999999999985344444   6799999999999999999999999999999885  457788899


Q ss_pred             HHHHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCC-hhhHHHHHHHHHHHHcCC-hhhHHHHHhcCCcHHHHHHHhh
Q 044293          154 LLSSLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTE-AEDLAGTSLAVLNLLARF-DEGMIALTKTDQIVSLMVDVLK  228 (236)
Q Consensus       154 a~~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~-~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~~i~~lv~~l~  228 (236)
                      ++.++.-||. .|++...+++.|+-...++.|+..+ ...++.+++..+.|+... .+++..+...|  ++.|++.-+
T Consensus       350 ~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G--iE~Li~~A~  425 (461)
T KOG4199|consen  350 VMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG--IEKLIRTAK  425 (461)
T ss_pred             HHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc--HHHHHHHHH
Confidence            9999999996 7899999999999999999997653 567889999999999865 57777777764  699988654

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.70  E-value=1.3e-15  Score=123.17  Aligned_cols=177  Identities=16%  Similarity=0.184  Sum_probs=155.8

Q ss_pred             HhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch
Q 044293           47 AQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK  125 (236)
Q Consensus        47 ~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~  125 (236)
                      .+. +-++.|+.+|+. .+|.+++.++.++.+.+.++.++..+.+.|+++.+..+|.++ ++.+++.|..+|.|++.+.+
T Consensus         9 l~~-~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen    9 LEA-QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             cCH-HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChh
Confidence            344 778999999984 689999999999999999999999999999999999999998 89999999999999999999


Q ss_pred             hhhhhcccCcHHHHHHhhcCC--CcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293          126 NKARFGVAGTVQVLVKAVSAP--SNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLL  203 (236)
Q Consensus       126 ~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l  203 (236)
                      |+..|..  .++.+.+.+.+.  +.+++..++++|.+|+..++++..+.  +.+|.++.+|..++ ..++.+++++|.||
T Consensus        87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~-~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGS-EKTKVQVLKVLVNL  161 (254)
T ss_pred             hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCC-hHHHHHHHHHHHHh
Confidence            9998853  577777655543  66888999999999999888877764  57999999999985 67889999999999


Q ss_pred             cCChhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293          204 ARFDEGMIALTKTDQIVSLMVDVLKGRS  231 (236)
Q Consensus       204 ~~~~~~~~~i~~~g~~i~~lv~~l~~~~  231 (236)
                      +.+++....+..+++ .+.++.++....
T Consensus       162 S~np~~~~~Ll~~q~-~~~~~~Lf~~~~  188 (254)
T PF04826_consen  162 SENPDMTRELLSAQV-LSSFLSLFNSSE  188 (254)
T ss_pred             ccCHHHHHHHHhccc-hhHHHHHHccCC
Confidence            999999999999887 799999997654

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.58  E-value=4.7e-14  Score=101.32  Aligned_cols=117  Identities=25%  Similarity=0.228  Sum_probs=105.9

Q ss_pred             HHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhccc
Q 044293           45 LLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAML  123 (236)
Q Consensus        45 ~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~  123 (236)
                      .+.+. |+++.|+.++.++++++++.++.+|.+++.+ ++.+..+.+.|+++.++.++.++ ++.++..++++|.+++..
T Consensus         2 ~~~~~-~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~   79 (120)
T cd00020           2 AVIQA-GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAG   79 (120)
T ss_pred             hHHHc-CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccC
Confidence            35676 9999999999999999999999999999998 67788888899999999999988 899999999999999988


Q ss_pred             c-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293          124 D-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus       124 ~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~  163 (236)
                      . ..+..+.+.|+++.|++++..++..+++.++++|.+||.
T Consensus        80 ~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            7 455666678999999999999999999999999999874

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.56  E-value=3.5e-14  Score=126.66  Aligned_cols=175  Identities=14%  Similarity=0.182  Sum_probs=148.8

Q ss_pred             cHHHHHhhccCCChHHHHHHHHHHHhhCCCCc-hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc---hhh
Q 044293           52 AISTLLGLSKSSSPIIRTLSLSILLNLSLNPD-LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD---KNK  127 (236)
Q Consensus        52 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~---~~~  127 (236)
                      -+|..+.+|.+.++.+|.+|+.-+.++|..++ .|..+.+.|+|+.|+++|++. +.+++.+|+++|.||....   +||
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccCCcccc
Confidence            36788889999999999999999999999775 488888999999999999999 8999999999999998754   589


Q ss_pred             hhhcccCcHHHHHHhhcC-CCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCC-------C------hhhHH
Q 044293          128 ARFGVAGTVQVLVKAVSA-PSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGST-------E------AEDLA  193 (236)
Q Consensus       128 ~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~-------~------~~~~~  193 (236)
                      ..|.+.++|+.++++|+. .+.++++....+|+||++++.-+..++. .++..|-+-+...       +      ..++.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence            999999999999999996 6778999999999999999666666654 4445554443221       1      24567


Q ss_pred             HHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhh
Q 044293          194 GTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLK  228 (236)
Q Consensus       194 ~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~  228 (236)
                      .++..+|.|++. ..+.|+++.++.|+|..|+..++
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq  427 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQ  427 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHH
Confidence            899999999997 78999999999999999999887

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.54  E-value=2.5e-13  Score=97.52  Aligned_cols=114  Identities=21%  Similarity=0.211  Sum_probs=104.7

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch-h
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL-K   85 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~   85 (236)
                      .+.|+.+++++++++++.+..++.+|.+++..+++.+..+.+. |++|.++.+|++++++++..++++|.+++.++.. +
T Consensus         6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~   84 (120)
T cd00020           6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEA-GGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNK   84 (120)
T ss_pred             cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHH
Confidence            3589999999999999999999999999999888889999987 9999999999999999999999999999998854 6


Q ss_pred             HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 044293           86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM  122 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~  122 (236)
                      ..+.+.|+++.++++++.+ +.++++.++++|.+|+.
T Consensus        85 ~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          85 LIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence            6677899999999999988 89999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.52  E-value=3e-12  Score=113.99  Aligned_cols=199  Identities=17%  Similarity=0.168  Sum_probs=169.8

Q ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293            6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK   85 (236)
Q Consensus         6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~   85 (236)
                      .++..+.+...|.++++.++.-+++.|.++..++....+.+.+. +.++.++..+.+++..+.+.|+.+|.+++.++.+.
T Consensus        75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~-~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~  153 (503)
T PF10508_consen   75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN-ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL  153 (503)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc-cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH
Confidence            35667778888889999999999999999998877767777777 99999999999999999999999999999999888


Q ss_pred             HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293           86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF  164 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~  164 (236)
                      ..+...++++.|..++... +..++-++..++.+++... +....+.+.|.++.+++-+.+++.-++.+++..|..|+.+
T Consensus       154 ~~l~~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~  232 (503)
T PF10508_consen  154 EQLFDSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET  232 (503)
T ss_pred             HHHhCcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence            8888888899999999987 6788999999999997654 5556666699999999999998878899999999999999


Q ss_pred             CCChHHHHHhCcHHHHHHHhcCCC-hh---h-HHHHHHHHHHHHcCC
Q 044293          165 HGNSTLAVRAGAVSELIHLIGSTE-AE---D-LAGTSLAVLNLLARF  206 (236)
Q Consensus       165 ~~~~~~~~~~g~i~~lv~ll~~~~-~~---~-~~~~a~~~L~~l~~~  206 (236)
                      +.+.+.+.+.|+++.+.+++.+.+ ++   . ..-..+....+++..
T Consensus       233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~  279 (503)
T PF10508_consen  233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV  279 (503)
T ss_pred             hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence            999999999999999999997642 22   1 223445677777764

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.51  E-value=1.8e-13  Score=127.86  Aligned_cols=208  Identities=17%  Similarity=0.149  Sum_probs=175.4

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-ch-hHHhhhcccHHHHHH
Q 044293           22 YEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DL-KQSLASMETIYRLNW   99 (236)
Q Consensus        22 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~-~~~i~~~g~i~~L~~   99 (236)
                      -..|+++..+|.||++.+..||..+....|+++.+|..|.+...++.-..+.+|.||+=.- .| |..+.+.|-+..|..
T Consensus       365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~  444 (2195)
T KOG2122|consen  365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA  444 (2195)
T ss_pred             HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence            3478899999999999988888877777799999999998877788888899999998754 34 777778999999998


Q ss_pred             HHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcc-cCcHHHHHHhhcCCC----cHHHHHHHHHHHHHhc----CCCChH
Q 044293          100 IIQSSSSQETVKLASSLICSLAMLD-KNKARFGV-AGTVQVLVKAVSAPS----NPAGHHLLSSLAELVQ----FHGNST  169 (236)
Q Consensus       100 lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~-~g~i~~Lv~lL~~~~----~~~~~~a~~aL~~L~~----~~~~~~  169 (236)
                      .--....+...+..+++||||+.+. +||..|-. -|++..||.+|....    -..++.+-.+|.|.++    .+..|+
T Consensus       445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ  524 (2195)
T KOG2122|consen  445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ  524 (2195)
T ss_pred             HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence            7655546688899999999997754 89999987 899999999998752    2466888889988776    456677


Q ss_pred             HHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc-CChhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293          170 LAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA-RFDEGMIALTKTDQIVSLMVDVLKGRS  231 (236)
Q Consensus       170 ~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g~~i~~lv~~l~~~~  231 (236)
                      .+.+.+++..|++.|++.+ -.++.+++.+|.||. ++++.++.+|+.|+ ++.|-.++++..
T Consensus       525 ILR~~NCLq~LLQ~LKS~S-LTiVSNaCGTLWNLSAR~p~DQq~LwD~gA-v~mLrnLIhSKh  585 (2195)
T KOG2122|consen  525 ILRRHNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARSPEDQQMLWDDGA-VPMLRNLIHSKH  585 (2195)
T ss_pred             HHHHhhHHHHHHHHhhhcc-eEEeecchhhhhhhhcCCHHHHHHHHhccc-HHHHHHHHhhhh
Confidence            7888999999999999874 567899999999997 68999999999998 899998987643

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.50  E-value=5.7e-12  Score=112.18  Aligned_cols=210  Identities=17%  Similarity=0.122  Sum_probs=179.2

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch-hHHhhhc
Q 044293           13 CVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL-KQSLASM   91 (236)
Q Consensus        13 lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~   91 (236)
                      +...|++++.+....++..|..+.... .....  .. +..+.|...|.++++.++..++..|.++..+++. ...+.+.
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~-~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~  118 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LP-QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN  118 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence            677788777777777888888877653 22222  22 7899999999999999999999999999998877 4555689


Q ss_pred             ccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-CCCChHH
Q 044293           92 ETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ-FHGNSTL  170 (236)
Q Consensus        92 g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~~~~~  170 (236)
                      +.++.++.++.++ +.++.+.|+.+|.+++..+.....+...+.++.|..++...++.++..+..++.+++. +++....
T Consensus       119 ~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~  197 (503)
T PF10508_consen  119 ELLPLIIQCLRDP-DLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA  197 (503)
T ss_pred             cHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            9999999999988 8999999999999999988888888888889999999998787888889999999986 4566677


Q ss_pred             HHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhC
Q 044293          171 AVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKG  229 (236)
Q Consensus       171 ~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~  229 (236)
                      +...|.++.++..+.+. +.-++.+|+.+|..|+..+.+.+-+.+.| +++.+.+++.+
T Consensus       198 ~~~sgll~~ll~eL~~d-DiLvqlnalell~~La~~~~g~~yL~~~g-i~~~L~~~l~~  254 (503)
T PF10508_consen  198 VVNSGLLDLLLKELDSD-DILVQLNALELLSELAETPHGLQYLEQQG-IFDKLSNLLQD  254 (503)
T ss_pred             HHhccHHHHHHHHhcCc-cHHHHHHHHHHHHHHHcChhHHHHHHhCC-HHHHHHHHHhc
Confidence            77899999999999985 46788999999999999999999999987 58999999865

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.44  E-value=3.2e-12  Score=107.41  Aligned_cols=221  Identities=15%  Similarity=0.079  Sum_probs=163.5

Q ss_pred             hHHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCChHHHHHHHhc-----cCcHHHHHhhccCCChHHHHHHHHHHHhhCC
Q 044293            8 ETINNCVSRSQ--SDSYEDQQKALQTLASITRVSPQYRSLLAQT-----DGAISTLLGLSKSSSPIIRTLSLSILLNLSL   80 (236)
Q Consensus         8 ~~i~~lv~~L~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-----~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~   80 (236)
                      .....++.+|+  +++++...+.+..+..+..+++...+.|.+.     .....+++.++.++|..++..|+.+|..+..
T Consensus        55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~  134 (312)
T PF03224_consen   55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS  134 (312)
T ss_dssp             -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            34455556664  3678899999999999998887666666652     1367889999999999999999999998877


Q ss_pred             CCchhHHhhhcccHHHHHHHHhccC---CHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhh-----cC--CCcHH
Q 044293           81 NPDLKQSLASMETIYRLNWIIQSSS---SQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAV-----SA--PSNPA  150 (236)
Q Consensus        81 ~~~~~~~i~~~g~i~~L~~lL~~~~---~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-----~~--~~~~~  150 (236)
                      ....+..-...+.++.+++.+.+..   +.+.+..|+.+|.+|...+.+|..+.+.|+++.|+.++     .+  .+.+.
T Consensus       135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            6655444433677788888887521   44566889999999999999999999999999999999     22  24567


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh--hHHHHHhcCCcHHHHHHHhh
Q 044293          151 GHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE--GMIALTKTDQIVSLMVDVLK  228 (236)
Q Consensus       151 ~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~--~~~~i~~~g~~i~~lv~~l~  228 (236)
                      ..+++-+++-|+.+++....+.+.+.+|.++++++....+.+...++.+|.|+...+.  ....|+.+|  ++++++.|+
T Consensus       215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~--~l~~l~~L~  292 (312)
T PF03224_consen  215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCG--LLKTLQNLS  292 (312)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH---HHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHcc--HHHHHHHHh
Confidence            8999999999999999999999999999999999887667788999999999998765  889999876  477777776


Q ss_pred             CC
Q 044293          229 GR  230 (236)
Q Consensus       229 ~~  230 (236)
                      .+
T Consensus       293 ~r  294 (312)
T PF03224_consen  293 ER  294 (312)
T ss_dssp             SS
T ss_pred             cC
Confidence            53

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=7.9e-12  Score=106.50  Aligned_cols=218  Identities=18%  Similarity=0.247  Sum_probs=166.3

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS   87 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~   87 (236)
                      -.+..||+-|..++.+...-....|..++-- .+|+-.+.+. |.|+.|+.++...+++++...+..+.|++.+...|..
T Consensus       304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~-~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K  381 (791)
T KOG1222|consen  304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQN-GIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK  381 (791)
T ss_pred             hHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhc-cHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence            3567788888877777777777888888876 4689999998 9999999999999999999999999999999999999


Q ss_pred             hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHH-HHHhcCCC
Q 044293           88 LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSL-AELVQFHG  166 (236)
Q Consensus        88 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL-~~L~~~~~  166 (236)
                      ++..|.+|.++.+|.++   .-..-|...|.++|.+++.|..+.....|+.+.+.+-++......-++.++ .|||....
T Consensus       382 Mv~~GllP~l~~ll~~d---~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR  458 (791)
T KOG1222|consen  382 MVNGGLLPHLASLLDSD---TKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKR  458 (791)
T ss_pred             HhhccchHHHHHHhCCc---ccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccc
Confidence            99999999999999865   333458888999999999999999999999999998876443333333333 46666665


Q ss_pred             ChHHHHHhCcHH-------------------------------------HHHHHhcCCChhhHHHHHHHHHHHHcCChhh
Q 044293          167 NSTLAVRAGAVS-------------------------------------ELIHLIGSTEAEDLAGTSLAVLNLLARFDEG  209 (236)
Q Consensus       167 ~~~~~~~~g~i~-------------------------------------~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~  209 (236)
                      |.+.+++..++.                                     -|...+...+++...-.|+++|.||...+-.
T Consensus       459 NaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dld  538 (791)
T KOG1222|consen  459 NAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLD  538 (791)
T ss_pred             cceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCC
Confidence            554444432222                                     2333333333345566789999999988877


Q ss_pred             HHHHHhcCCcHHHHHHHhhCC
Q 044293          210 MIALTKTDQIVSLMVDVLKGR  230 (236)
Q Consensus       210 ~~~i~~~g~~i~~lv~~l~~~  230 (236)
                      ..++.+...++|-+=..|+.|
T Consensus       539 w~~ilq~~~LvPw~k~~L~pg  559 (791)
T KOG1222|consen  539 WAKILQSENLVPWMKTQLQPG  559 (791)
T ss_pred             HHHHHhhccccHHHHHhhcCC
Confidence            778887777777776666654

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.39  E-value=3.2e-11  Score=101.53  Aligned_cols=224  Identities=12%  Similarity=0.083  Sum_probs=172.4

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC----C---hHHHHHHHHHHHhhCC
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS----S---PIIRTLSLSILLNLSL   80 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~----~---~~~~~~a~~~L~~l~~   80 (236)
                      +.++-|.+...+++.++..+..++|.+.|+++.++|..|.+. ||-..++++|++.    +   .+....+.+.|.|...
T Consensus        87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~l-gGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   87 EALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNL-GGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhc-CCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            345555666667788899999999999999999999999999 9988888887642    2   3666777889999888


Q ss_pred             CCch-hHHhhhcccHHHHHHHHhccC---------------------------------------------CHHHHHHHH
Q 044293           81 NPDL-KQSLASMETIYRLNWIIQSSS---------------------------------------------SQETVKLAS  114 (236)
Q Consensus        81 ~~~~-~~~i~~~g~i~~L~~lL~~~~---------------------------------------------~~~~~~~a~  114 (236)
                      +.+. +.++++.|.++.|...+.-+.                                             .++..+-+.
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            8765 888889999998776553211                                             123333344


Q ss_pred             HHHHHhcccchhhhhhcccCcHHHHHHhhcC-C-----------------------------------------------
Q 044293          115 SLICSLAMLDKNKARFGVAGTVQVLVKAVSA-P-----------------------------------------------  146 (236)
Q Consensus       115 ~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~-----------------------------------------------  146 (236)
                      ..+...+.++..|-.+.+.|.+..++.+++. +                                               
T Consensus       246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~  325 (604)
T KOG4500|consen  246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR  325 (604)
T ss_pred             HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence            5566677777777777778888888777764 1                                               


Q ss_pred             --CcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCC----ChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcH
Q 044293          147 --SNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGST----EAEDLAGTSLAVLNLLARFDEGMIALTKTDQIV  220 (236)
Q Consensus       147 --~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~----~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i  220 (236)
                        +........-+++|+++.+.++.++++.|.+..|++++...    ++-+.+..|+++|+|+..-..+|..+...| +.
T Consensus       326 S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aG-vt  404 (604)
T KOG4500|consen  326 SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAG-VT  404 (604)
T ss_pred             CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccc-hH
Confidence              11133455677889999999999999999999999999641    245678899999999999999999999998 58


Q ss_pred             HHHHHHhhCCccc
Q 044293          221 SLMVDVLKGRSMF  233 (236)
Q Consensus       221 ~~lv~~l~~~~~~  233 (236)
                      +.++..++..+|+
T Consensus       405 eaIL~~lk~~~pp  417 (604)
T KOG4500|consen  405 EAILLQLKLASPP  417 (604)
T ss_pred             HHHHHHHHhcCCc
Confidence            9999999876654

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.36  E-value=6.9e-12  Score=117.61  Aligned_cols=199  Identities=19%  Similarity=0.165  Sum_probs=167.6

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhh-ccCCChHHHHHHHHHHHhhCCCC-c
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGL-SKSSSPIIRTLSLSILLNLSLNP-D   83 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~-~   83 (236)
                      ++.++.+|.-|.+..++...--+..|+||+=.. -..+..+.+. |-+..|... ++..........+.+||||+.|- +
T Consensus       393 rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~-GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte  471 (2195)
T KOG2122|consen  393 RGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRET-GSVTALAACALRNKKESTLKAVLSALWNLSAHCTE  471 (2195)
T ss_pred             hhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhh-hhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence            678999999998777777777778999998553 3457888888 999999876 66666667788999999999985 7


Q ss_pred             hhHHhh-hcccHHHHHHHHhcc---CCHHHHHHHHHHHHHhcc----cchhhhhhcccCcHHHHHHhhcCCCcHHHHHHH
Q 044293           84 LKQSLA-SMETIYRLNWIIQSS---SSQETVKLASSLICSLAM----LDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLL  155 (236)
Q Consensus        84 ~~~~i~-~~g~i~~L~~lL~~~---~~~~~~~~a~~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~  155 (236)
                      ||..|. -.|++..|+.+|...   +...+.+++-++|.|.+.    +++.++.+.+.+.+..|+++|++.+--++.++|
T Consensus       472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC  551 (2195)
T KOG2122|consen  472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC  551 (2195)
T ss_pred             cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence            888887 589999999999854   145788899999998654    557788888899999999999999988999999


Q ss_pred             HHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh
Q 044293          156 SSLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD  207 (236)
Q Consensus       156 ~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~  207 (236)
                      .+||||+. +++..+.+++.|+++.|..|+.+. +.-+..-++.+|.||..+.
T Consensus       552 GTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  552 GTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence            99999996 678888889999999999999987 4678889999999998765

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=3.3e-11  Score=102.77  Aligned_cols=215  Identities=13%  Similarity=0.118  Sum_probs=171.4

Q ss_pred             hHHHhHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC
Q 044293            4 PRVRETINNCVSRSQS---DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL   80 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~---~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~   80 (236)
                      |..++.|.++-+.++.   ..+...+.|+..|.+++.+ -..-..+... .+|..||.-|..++.++.......|..++.
T Consensus       256 etLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed-~~~ElKMrrk-niV~mLVKaLdr~n~~Ll~lv~~FLkKLSI  333 (791)
T KOG1222|consen  256 ETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAED-ISVELKMRRK-NIVAMLVKALDRSNSSLLTLVIKFLKKLSI  333 (791)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHH-hHHHHHHHHHcccchHHHHHHHHHHHHhhh
Confidence            4456677777777763   2334556688888999876 3445566665 899999999999888888888999999999


Q ss_pred             CCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293           81 NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE  160 (236)
Q Consensus        81 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~  160 (236)
                      ..+||..+.+.|.+..|++++... .++.+......|+|+|.+...+..++..|.+|.|+.++.+++.  ...|+..|+.
T Consensus       334 f~eNK~~M~~~~iveKL~klfp~~-h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh  410 (791)
T KOG1222|consen  334 FDENKIVMEQNGIVEKLLKLFPIQ-HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYH  410 (791)
T ss_pred             hccchHHHHhccHHHHHHHhcCCC-CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhh
Confidence            999999999999999999999988 8999999999999999999999999999999999999988753  3567889999


Q ss_pred             HhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHH-HHcCChhhHHHHHhcCCcHHHHHH
Q 044293          161 LVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLN-LLARFDEGMIALTKTDQIVSLMVD  225 (236)
Q Consensus       161 L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~-~l~~~~~~~~~i~~~g~~i~~lv~  225 (236)
                      ++..+..+..+....+|+.+++.+-.+...++ ..++-+++ |+|.+.-+.+.+.+-.| ...|.+
T Consensus       411 ~S~dD~~K~MfayTdci~~lmk~v~~~~~~~v-dl~lia~ciNl~lnkRNaQlvceGqg-L~~LM~  474 (791)
T KOG1222|consen  411 LSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEV-DLALIALCINLCLNKRNAQLVCEGQG-LDLLME  474 (791)
T ss_pred             hccCcHHHHHHHHHHHHHHHHHHHHhcCCcee-cHHHHHHHHHHHhccccceEEecCcc-hHHHHH
Confidence            99999999999999999999987755433333 33333333 77777766666665445 455544

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.25  E-value=2.1e-09  Score=92.68  Aligned_cols=222  Identities=15%  Similarity=0.130  Sum_probs=171.9

Q ss_pred             HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhc----cCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293            7 RETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQT----DGAISTLLGLSKSSSPIIRTLSLSILLNLSLN   81 (236)
Q Consensus         7 ~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~----~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~   81 (236)
                      ...+..++.+++ .+.++..++.+..+..+...++...+.|.+.    ++....++.+|+.++..++..++.+|..+...
T Consensus        52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence            456778888886 4567788889999999998877666677664    36788888899988888999999999987654


Q ss_pred             Cch-hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC--CcHHHHHHHHHH
Q 044293           82 PDL-KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP--SNPAGHHLLSSL  158 (236)
Q Consensus        82 ~~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL  158 (236)
                      ... .......-..+.+...+++..+.+.+..|+.+|..|...+..|..+.+.++++.|+.+|+..  +.+...+++-++
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l  211 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI  211 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence            322 11111112445566666654346777888899999999999999999888999999999864  457889999999


Q ss_pred             HHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh-------hhHHHHHhcCCcHHHHHHHhhCC
Q 044293          159 AELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD-------EGMIALTKTDQIVSLMVDVLKGR  230 (236)
Q Consensus       159 ~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~-------~~~~~i~~~g~~i~~lv~~l~~~  230 (236)
                      +-|+-+++....+.+.+.||.++++++....+.+...++.+|.|+...+       .....++..|  +++++..|+.+
T Consensus       212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~--l~~~l~~L~~r  288 (429)
T cd00256         212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCK--VLKTLQSLEQR  288 (429)
T ss_pred             HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcC--hHHHHHHHhcC
Confidence            9999998877777788999999999998766678889999999998743       3455677765  47777777653

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=99.24  E-value=1.7e-10  Score=82.71  Aligned_cols=132  Identities=15%  Similarity=0.175  Sum_probs=114.8

Q ss_pred             HHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch
Q 044293            6 VRETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL   84 (236)
Q Consensus         6 ~~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~   84 (236)
                      ..+.++.||+..+ ..+.+.+++.+.-|.+++.+ |.|...+.+. ++++.+++-|..++..+.+.+++.|+|+|.++.|
T Consensus        14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql-~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n   91 (173)
T KOG4646|consen   14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQL-DVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN   91 (173)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHh-hHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence            3678899999996 46788899999999999997 8999999999 9999999999999999999999999999999999


Q ss_pred             hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHH
Q 044293           85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLV  140 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv  140 (236)
                      +.-|.+.+++|.++..+.+. ...+...|+.++..|+... ..+..+.....+..+.
T Consensus        92 ~~~I~ea~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~  147 (173)
T KOG4646|consen   92 AKFIREALGLPLIIFVLSSP-PEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQ  147 (173)
T ss_pred             HHHHHHhcCCceEEeecCCC-hHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHH
Confidence            99999999999999999988 7889999999999999865 4566665544443333

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=2.5e-09  Score=95.92  Aligned_cols=216  Identities=19%  Similarity=0.244  Sum_probs=174.6

Q ss_pred             HHhHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC--ChHHHHHHHHHHHhhCCCC
Q 044293            6 VRETINNCVSRSQSDS-YEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS--SPIIRTLSLSILLNLSLNP   82 (236)
Q Consensus         6 ~~~~i~~lv~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~   82 (236)
                      .-++|+.|++++.+.. .+.|+.|+..|..+++.   +|..++.+  |+++|++.|..+  |+++..-++..++++..++
T Consensus        20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srk---YR~~Vga~--Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d   94 (970)
T KOG0946|consen   20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK---YREEVGAQ--GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD   94 (970)
T ss_pred             HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHH---HHHHHHHc--ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence            3579999999997654 77899999999999874   78888876  699999999764  7899999999999987776


Q ss_pred             c------h-hH----------H-hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc--hhhhhhcc-cCcHHHHHH
Q 044293           83 D------L-KQ----------S-LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD--KNKARFGV-AGTVQVLVK  141 (236)
Q Consensus        83 ~------~-~~----------~-i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~-~g~i~~Lv~  141 (236)
                      +      + +.          . |...+.|..++..+... |.-+|..+.-.|.++-.+.  +.+..+.. .-+|..|+.
T Consensus        95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd  173 (970)
T KOG0946|consen   95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD  173 (970)
T ss_pred             cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence            3      2 31          1 33678999999999988 8899999999999886554  55555554 889999999


Q ss_pred             hhcCCCcHHHHHHHHHHHHHhcCCCChHHHH-HhCcHHHHHHHhcCC---ChhhHHHHHHHHHHHHcCCh-hhHHHHHhc
Q 044293          142 AVSAPSNPAGHHLLSSLAELVQFHGNSTLAV-RAGAVSELIHLIGST---EAEDLAGTSLAVLNLLARFD-EGMIALTKT  216 (236)
Q Consensus       142 lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~-~~g~i~~lv~ll~~~---~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~  216 (236)
                      +|++...+++..++-.|..|+......+.++ -.+++..|.+++...   +..-+.+.|+..|.||..+. .++.-|.+.
T Consensus       174 lL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~  253 (970)
T KOG0946|consen  174 LLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREG  253 (970)
T ss_pred             HHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcc
Confidence            9998888899999999999999877766665 489999999999753   22357799999999999754 677667665


Q ss_pred             CCcHHHHHHHhh
Q 044293          217 DQIVSLMVDVLK  228 (236)
Q Consensus       217 g~~i~~lv~~l~  228 (236)
                      + -||.|.++|.
T Consensus       254 ~-~i~rL~klL~  264 (970)
T KOG0946|consen  254 S-YIPRLLKLLS  264 (970)
T ss_pred             c-cHHHHHhhcC
Confidence            5 5899998775

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=4e-09  Score=87.43  Aligned_cols=184  Identities=22%  Similarity=0.209  Sum_probs=146.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-chhHHhhhcccHHHH
Q 044293           19 SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DLKQSLASMETIYRL   97 (236)
Q Consensus        19 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~i~~L   97 (236)
                      +.+.+.+..|+..|..++.+ -+|..-+... ||..+++.++.+.+..+|+.|+++|..++.+. ..+..+.+.|+++.|
T Consensus        94 s~~le~ke~ald~Le~lve~-iDnAndl~~~-ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVED-IDNANDLISL-GGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHh-hhhHHhHhhc-cCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            45677888999999999986 6788899998 99999999999999999999999999887764 568888899999999


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCC--CcHHHHHHHHHHHHHhcCC-CChHHHHH
Q 044293           98 NWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAP--SNPAGHHLLSSLAELVQFH-GNSTLAVR  173 (236)
Q Consensus        98 ~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~-~~~~~~~~  173 (236)
                      +..|.++.+..++..|..+++.|-.+. ....++...++...|...+.++  +...+..++-.+.+|.... ..+..+..
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~  251 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS  251 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            999998756778899999999998865 4556677788899999999995  5567788888888888754 34443444


Q ss_pred             hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293          174 AGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       174 ~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~  205 (236)
                      .|....+..+....+ .++.+.++.++..+..
T Consensus       252 ~~f~~~~~~l~~~l~-~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  252 LGFQRVLENLISSLD-FEVNEAALTALLSLLS  282 (342)
T ss_pred             hhhhHHHHHHhhccc-hhhhHHHHHHHHHHHH
Confidence            555555666665553 5677777777666544

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.14  E-value=1.8e-09  Score=90.79  Aligned_cols=185  Identities=19%  Similarity=0.138  Sum_probs=139.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC----CChHHHHHHHHHHHhhCCCCch
Q 044293            9 TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS----SSPIIRTLSLSILLNLSLNPDL   84 (236)
Q Consensus         9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~   84 (236)
                      -...++.++.++|.-++..|+..|..+...++....... . +.++.+++++++    ++.+.+..++.+|.++...+..
T Consensus       106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~-~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~  183 (312)
T PF03224_consen  106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-K-EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY  183 (312)
T ss_dssp             -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-H-HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-H-HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh
Confidence            456677788889999999999999999887554433322 3 578888887765    3456678899999999999999


Q ss_pred             hHHhhhcccHHHHHHHH------hccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC-CcHHHHHHHHH
Q 044293           85 KQSLASMETIYRLNWII------QSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP-SNPAGHHLLSS  157 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL------~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~a  157 (236)
                      |..+.+.|+++.+..++      .+..+.+++=+++-++|-||.+++....+...+.|+.|+++++.. ...+.+-++.+
T Consensus       184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~  263 (312)
T PF03224_consen  184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAI  263 (312)
T ss_dssp             HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHH
Confidence            99999999999999999      222246677789999999999999999998888999999999864 56788999999


Q ss_pred             HHHHhcCCC--ChHHHHHhCcHHHHHHHhcCC-ChhhHHHH
Q 044293          158 LAELVQFHG--NSTLAVRAGAVSELIHLIGST-EAEDLAGT  195 (236)
Q Consensus       158 L~~L~~~~~--~~~~~~~~g~i~~lv~ll~~~-~~~~~~~~  195 (236)
                      |.||.....  +...|+..|+++.+-.|.... +++++.+.
T Consensus       264 l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed  304 (312)
T PF03224_consen  264 LRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED  304 (312)
T ss_dssp             HHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence            999998765  778888888877777666542 23666543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.10  E-value=3.3e-09  Score=89.61  Aligned_cols=215  Identities=15%  Similarity=0.081  Sum_probs=160.3

Q ss_pred             HHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CCh-------HHHHHHHHHHHhhC
Q 044293            9 TINNCVSRSQS-DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSP-------IIRTLSLSILLNLS   79 (236)
Q Consensus         9 ~i~~lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~-------~~~~~a~~~L~~l~   79 (236)
                      ....++++|.+ -+++.+....+.+...+.+ +..+-.+++. |.++.+++++++ ++-       .....++....-+.
T Consensus       224 l~~~l~~ll~~~v~~d~~eM~feila~~aen-d~Vkl~la~~-gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll  301 (604)
T KOG4500|consen  224 LVFMLLQLLPSMVREDIDEMIFEILAKAAEN-DLVKLSLAQN-GLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL  301 (604)
T ss_pred             HHHHHHHHHHHhhccchhhHHHHHHHHHhcC-cceeeehhhc-chHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhh
Confidence            34556666653 3556677777788888775 5678889998 999999999876 221       22334555555566


Q ss_pred             CCCchhHHhhhcc-cHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC-----CCcHHHHH
Q 044293           80 LNPDLKQSLASME-TIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA-----PSNPAGHH  153 (236)
Q Consensus        80 ~~~~~~~~i~~~g-~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~  153 (236)
                      ..++.-+.+...| ++..+.+.+.+. |.+....++-+|.|+++.++++.++++.|++..|++.|..     +|...+..
T Consensus       302 tGDeSMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA  380 (604)
T KOG4500|consen  302 TGDESMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHA  380 (604)
T ss_pred             cCchHHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHH
Confidence            6666656665544 899999999988 8899999999999999999999999999999999999965     46678889


Q ss_pred             HHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh-hHHHHHhcCCcHHHHHHHhhCCc
Q 044293          154 LLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE-GMIALTKTDQIVSLMVDVLKGRS  231 (236)
Q Consensus       154 a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~g~~i~~lv~~l~~~~  231 (236)
                      ++.+|+||.....||..+..+|+...++..++... |.++..-+.+|..+....+ ...++..    -+.+++-|..|+
T Consensus       381 ~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~-ppv~fkllgTlrM~~d~qe~~a~eL~k----n~~l~ekLv~Ws  454 (604)
T KOG4500|consen  381 CLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLAS-PPVTFKLLGTLRMIRDSQEYIACELAK----NPELFEKLVDWS  454 (604)
T ss_pred             HHHHHHhccccCCchhhccccchHHHHHHHHHhcC-CcchHHHHHHHHHHHhchHHHHHHHhc----CHHHHHHHHHhh
Confidence            99999999999999999999999999999998763 5566666666665543332 3344433    244444444443

>PRK09687 putative lyase; Provisional

Probab=99.03  E-value=2e-08  Score=82.95  Aligned_cols=29  Identities=10%  Similarity=0.216  Sum_probs=17.9

Q ss_pred             cCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293          133 AGTVQVLVKAVSAPSNPAGHHLLSSLAEL  161 (236)
Q Consensus       133 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L  161 (236)
                      ..+++.|+.+|.+.++.++..|+.+|..+
T Consensus       158 ~~ai~~L~~~L~d~~~~VR~~A~~aLg~~  186 (280)
T PRK09687        158 EAAIPLLINLLKDPNGDVRNWAAFALNSN  186 (280)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence            34566666666666666666666666655

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1.5e-08  Score=91.57  Aligned_cols=213  Identities=13%  Similarity=0.076  Sum_probs=163.5

Q ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHH-HhcCChHHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhhCCC-Cch
Q 044293            9 TINNCVSRSQSD-SYEDQQKALQTLAS-ITRVSPQYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNLSLN-PDL   84 (236)
Q Consensus         9 ~i~~lv~~L~~~-~~~~~~~a~~~L~~-l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~-~~~   84 (236)
                      -+..|++=|+.. ++..|.+|+..|.. +...+++.-.-|-- +-.||.|+.+|++. +.+++-.|+++|.+|+.. |..
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv-~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S  246 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPV-KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS  246 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence            456677777654 78888888877754 44445544333332 26999999999875 689999999999998875 667


Q ss_pred             hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293           85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF  164 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~  164 (236)
                      ...+++.+.||.|+..|..-...++-++++.+|..++..+  -..+.++|++-..+.++.=-+..+++.|+.+..|+|..
T Consensus       247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks  324 (1051)
T KOG0168|consen  247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS  324 (1051)
T ss_pred             hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7888899999999998887657899999999999999976  34566789999999999777777899999999999973


Q ss_pred             --CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHH----cCChhhHHHHHhcCCcHHHHHHHhh
Q 044293          165 --HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLL----ARFDEGMIALTKTDQIVSLMVDVLK  228 (236)
Q Consensus       165 --~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l----~~~~~~~~~i~~~g~~i~~lv~~l~  228 (236)
                        ++.-..+  ..++|.|-.+|+..+ .+..+.++-++.-+    ...++--+++..+| +|.....++.
T Consensus       325 i~sd~f~~v--~ealPlL~~lLs~~D-~k~ies~~ic~~ri~d~f~h~~~kLdql~s~d-Li~~~~qLls  390 (1051)
T KOG0168|consen  325 IRSDEFHFV--MEALPLLTPLLSYQD-KKPIESVCICLTRIADGFQHGPDKLDQLCSHD-LITNIQQLLS  390 (1051)
T ss_pred             CCCccchHH--HHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHhcccChHHHHHHhchh-HHHHHHHHHh
Confidence              4555554  368999999998875 44556555555544    34677888888887 6888877664

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=2.1e-08  Score=90.64  Aligned_cols=218  Identities=14%  Similarity=0.119  Sum_probs=175.7

Q ss_pred             HHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCCc
Q 044293            6 VRETINNCVSRSQS-DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNPD   83 (236)
Q Consensus         6 ~~~~i~~lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~   83 (236)
                      +...||.|+.+|+. .+.+++-.|+++|.+|+.--|.....+++. ++||.|+.-|.. .-.++-+.++.+|--++..  
T Consensus       209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~-~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--  285 (1051)
T KOG0168|consen  209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDE-HAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--  285 (1051)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecc-cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--
Confidence            46689999999985 469999999999999999888888888987 999999977654 4568889999999988874  


Q ss_pred             hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc---hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293           84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD---KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE  160 (236)
Q Consensus        84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~  160 (236)
                      .-..|.+.|+|...+..|+-. +..+++.|..+-.|+|..-   +..- +  ..++|.|..+|+..+....+.++.++..
T Consensus       286 H~~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~-v--~ealPlL~~lLs~~D~k~ies~~ic~~r  361 (1051)
T KOG0168|consen  286 HPKAILQAGALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHF-V--MEALPLLTPLLSYQDKKPIESVCICLTR  361 (1051)
T ss_pred             ccHHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchH-H--HHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence            335677899999999999877 7889999999999998742   2221 1  4679999999999988999999999988


Q ss_pred             Hhc---CC-CChHHHHHhCcHHHHHHHhcCCC---hhhHHHHHHHHHHHHcCC-hhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293          161 LVQ---FH-GNSTLAVRAGAVSELIHLIGSTE---AEDLAGTSLAVLNLLARF-DEGMIALTKTDQIVSLMVDVLKGRS  231 (236)
Q Consensus       161 L~~---~~-~~~~~~~~~g~i~~lv~ll~~~~---~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~~i~~lv~~l~~~~  231 (236)
                      +..   +. +--++++..|.|....+|+...+   ...+....+++|.-||.+ +..+....+.+ |...|-++|..-+
T Consensus       362 i~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~-I~~~L~~il~g~s  439 (1051)
T KOG0168|consen  362 IADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLD-IADTLKRILQGYS  439 (1051)
T ss_pred             HHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhh-HHHHHHHHHhccC
Confidence            875   22 33456788899999999997652   234556788888888876 89999999987 6778888887543

>PRK09687 putative lyase; Provisional

Probab=98.94  E-value=8.2e-08  Score=79.35  Aligned_cols=165  Identities=14%  Similarity=0.067  Sum_probs=120.5

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      .-.++.|...|.+++..++..+++.|..+-.           . .+++.+..++.++++.+|..++++|..+...+..  
T Consensus        22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~-~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--   87 (280)
T PRK09687         22 KLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------Q-DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--   87 (280)
T ss_pred             hccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------c-hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence            3468889999999999999999999886632           2 5677888889999999999999999998654332  


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG  166 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~  166 (236)
                         ....++.|..++..+.++.++..|+.+|.+++......    ...+++.+...+.+++..++..++.+|..+..   
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~---  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND---  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC---
Confidence               22456777777444438999999999999986533211    23456778888888888999999999865431   


Q ss_pred             ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293          167 NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLL  203 (236)
Q Consensus       167 ~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l  203 (236)
                             ..+++.|+.++.+.+ ..++..|+.+|..+
T Consensus       158 -------~~ai~~L~~~L~d~~-~~VR~~A~~aLg~~  186 (280)
T PRK09687        158 -------EAAIPLLINLLKDPN-GDVRNWAAFALNSN  186 (280)
T ss_pred             -------HHHHHHHHHHhcCCC-HHHHHHHHHHHhcC
Confidence                   235666677776653 45666666666655

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.91  E-value=1.4e-08  Score=72.97  Aligned_cols=122  Identities=12%  Similarity=0.088  Sum_probs=106.9

Q ss_pred             CcHHHHHhhcc-CCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhh
Q 044293           51 GAISTLLGLSK-SSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKAR  129 (236)
Q Consensus        51 g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~  129 (236)
                      +.+..||.-.. ..+.+.++....-|+|++.+|-|-..+.+.+.+..+++.|... ++..++.+.+.|+|+|.++.|++.
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~n~~~   94 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKTNAKF   94 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChHHHHH
Confidence            45666665544 4578899999999999999999999999999999999999988 899999999999999999999999


Q ss_pred             hcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC-ChHHHHH
Q 044293          130 FGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG-NSTLAVR  173 (236)
Q Consensus       130 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~~~~  173 (236)
                      |.+++++|.++..+.++...+...++.++..|+.... .+..+..
T Consensus        95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~  139 (173)
T KOG4646|consen   95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS  139 (173)
T ss_pred             HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence            9999999999999999988889999999999998653 4555544

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.91  E-value=2.7e-07  Score=79.88  Aligned_cols=220  Identities=15%  Similarity=0.177  Sum_probs=153.8

Q ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC--ChHHHHHHHHHHHhhCCCCchh
Q 044293            9 TINNCVSRSQSD-SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS--SPIIRTLSLSILLNLSLNPDLK   85 (236)
Q Consensus         9 ~i~~lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~   85 (236)
                      ....+...|+++ +.+.+.-|+.+|..+... ++.|..|.+. ++++.|+.+|+..  +...+-.++-+++-++.+++..
T Consensus       144 ~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~-~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~  221 (429)
T cd00256         144 YFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLA-DGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAA  221 (429)
T ss_pred             HHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHc-cCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHH
Confidence            334555556543 355666688899999887 6789999998 8999999999763  4577889999999999998876


Q ss_pred             HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-------hhhhhhcccCcHHHHHHhhcCC--CcHHHHHHHH
Q 044293           86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-------KNKARFGVAGTVQVLVKAVSAP--SNPAGHHLLS  156 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-------~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~  156 (236)
                      ......+.|+.++++++....+.+.+-+..+|.||....       .....+...| ++++++.|...  +++.....+.
T Consensus       222 ~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~-l~~~l~~L~~rk~~DedL~edl~  300 (429)
T cd00256         222 EVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCK-VLKTLQSLEQRKYDDEDLTDDLK  300 (429)
T ss_pred             HhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcC-hHHHHHHHhcCCCCcHHHHHHHH
Confidence            777788999999999998756788899999999998743       2233444555 46666666543  3332222222


Q ss_pred             HHH--------HHhc------------------------CCCChHHHHHh--CcHHHHHHHhcCCChhhHHHHHHHHHHH
Q 044293          157 SLA--------ELVQ------------------------FHGNSTLAVRA--GAVSELIHLIGSTEAEDLAGTSLAVLNL  202 (236)
Q Consensus       157 aL~--------~L~~------------------------~~~~~~~~~~~--g~i~~lv~ll~~~~~~~~~~~a~~~L~~  202 (236)
                      .|.        .+++                        +.+|...+-+.  .++..|+++|..++++.+..-|+.=+..
T Consensus       301 ~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige  380 (429)
T cd00256         301 FLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGE  380 (429)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHH
Confidence            222        1221                        11244444443  3567899999655446666667777777


Q ss_pred             HcC-ChhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293          203 LAR-FDEGMIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       203 l~~-~~~~~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                      +++ +|.+|..+-+.|| =..+.+++.+.++
T Consensus       381 ~vr~~P~gr~i~~~lg~-K~~vM~Lm~h~d~  410 (429)
T cd00256         381 YVRHYPRGKDVVEQLGG-KQRVMRLLNHEDP  410 (429)
T ss_pred             HHHHCccHHHHHHHcCc-HHHHHHHhcCCCH
Confidence            774 6899999999987 5777778887664

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF05536 Neurochondrin: Neurochondrin

Probab=98.78  E-value=6.1e-07  Score=80.59  Aligned_cols=157  Identities=19%  Similarity=0.183  Sum_probs=128.6

Q ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChH---HHHHHHhccCcHHHHHhhccCC-------ChHHHHHHHHHH
Q 044293            6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQ---YRSLLAQTDGAISTLLGLSKSS-------SPIIRTLSLSIL   75 (236)
Q Consensus         6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~---~~~~i~~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L   75 (236)
                      ..+.+.+++.+|+..+.+.+..++..+.++...++.   .++.+.++ =+.+.|-+||+++       ....+.-|+.+|
T Consensus         3 ~~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~a-ig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL   81 (543)
T PF05536_consen    3 QSASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEA-IGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL   81 (543)
T ss_pred             chHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHh-cChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence            357899999999988877888899999999987653   34567787 6688888999873       356788999999


Q ss_pred             HhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHH
Q 044293           76 LNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLL  155 (236)
Q Consensus        76 ~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~  155 (236)
                      ..+|.+|+....-.--+-||.|+..+.++.+.++...|..+|..++..++.+..+.+.|+++.|.+.+.+ ++...+.|+
T Consensus        82 ~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al  160 (543)
T PF05536_consen   82 AAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL  160 (543)
T ss_pred             HHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence            9999988764322224679999999988733499999999999999999999999999999999999988 446678889


Q ss_pred             HHHHHHhcC
Q 044293          156 SSLAELVQF  164 (236)
Q Consensus       156 ~aL~~L~~~  164 (236)
                      ..+.+++..
T Consensus       161 ~lL~~Lls~  169 (543)
T PF05536_consen  161 NLLLNLLSR  169 (543)
T ss_pred             HHHHHHHHh
Confidence            998888764

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=7.8e-07  Score=73.97  Aligned_cols=155  Identities=20%  Similarity=0.212  Sum_probs=125.2

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCCh-HHHHHHHHHHHhhCCCC-chh
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSP-IIRTLSLSILLNLSLNP-DLK   85 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~l~~~~-~~~   85 (236)
                      ++...++..++++++.+|..|++.|...+.+||..++.+.+. |+.+.|+..|+++++ .++.+|+.++..+-.+. .+.
T Consensus       124 ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~-~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~  202 (342)
T KOG2160|consen  124 GGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL-GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQ  202 (342)
T ss_pred             cCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc-ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHH
Confidence            456667778999999999999999999999999999999998 999999999987655 56789999999887764 567


Q ss_pred             HHhhhcccHHHHHHHHhcc-CCHHHHHHHHHHHHHhcccch-hhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293           86 QSLASMETIYRLNWIIQSS-SSQETVKLASSLICSLAMLDK-NKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~-~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~  163 (236)
                      ..+...+|...|...++++ .+...+..++..+.++...+. .+..+...|+-..+..+....+.+..+.+++++..+..
T Consensus       203 ~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  203 DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            8888888899999999985 267788889999998876553 33433346777777777777777888888888765554

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.71  E-value=1e-06  Score=71.80  Aligned_cols=209  Identities=19%  Similarity=0.171  Sum_probs=149.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhh
Q 044293           10 INNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLA   89 (236)
Q Consensus        10 i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~   89 (236)
                      ...+++++.+.+|.++..|+..+..++..  ..+..+....-.++.+.+++....+  -+.|+.+|.|++.++..+..+.
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll   80 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL   80 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence            45789999999999999999999888876  3333333223567778888877666  5678899999999999888887


Q ss_pred             hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc--c----CcHHHHHH-hhcCCCc--HHHHHHHHHHHH
Q 044293           90 SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV--A----GTVQVLVK-AVSAPSN--PAGHHLLSSLAE  160 (236)
Q Consensus        90 ~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~----g~i~~Lv~-lL~~~~~--~~~~~a~~aL~~  160 (236)
                      +. ++..+++.+... ....-...+.+|.||+.+++....+..  .    .++..++. ....+..  .-..+.+-.+.|
T Consensus        81 ~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n  158 (353)
T KOG2973|consen   81 QD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN  158 (353)
T ss_pred             HH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence            66 999999998865 345566678889999999876554431  1    34444444 4443322  334677788999


Q ss_pred             HhcCCCChHHHHHhCcHHHHH-HHhcCCChhhH-HHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHh
Q 044293          161 LVQFHGNSTLAVRAGAVSELI-HLIGSTEAEDL-AGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVL  227 (236)
Q Consensus       161 L~~~~~~~~~~~~~g~i~~lv-~ll~~~~~~~~-~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l  227 (236)
                      +++.+.+|+.+.+...+|.-. -.+...+ ..+ +...+++|.|.|.+....+.+... + +..+.-+|
T Consensus       159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~-s~vRr~GvagtlkN~cFd~~~h~~lL~e-~-~~lLp~iL  224 (353)
T KOG2973|consen  159 LSQFEAGRKLLLEPKRFPDQKLLPFTSED-SQVRRGGVAGTLKNCCFDAKLHEVLLDE-S-INLLPAIL  224 (353)
T ss_pred             HhhhhhhhhHhcchhhhhHhhhhcccccc-hhhhccchHHHHHhhhccchhHHHHhcc-h-HHHHHHHH
Confidence            999999999998877555422 2222322 334 367999999999999888888884 4 45555544

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.70  E-value=1.1e-06  Score=77.81  Aligned_cols=163  Identities=15%  Similarity=0.133  Sum_probs=120.4

Q ss_pred             HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch-hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 044293           42 YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL-KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSL  120 (236)
Q Consensus        42 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~L  120 (236)
                      ++..+-+. -....+.......|...+..++..+.+++..-.. +..+...+++.++++++..+ +.-++..+.++|+|+
T Consensus       369 ~~k~~l~~-~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~Nl  446 (678)
T KOG1293|consen  369 LKKEILET-TTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNL  446 (678)
T ss_pred             HHHHHHHH-HHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHH
Confidence            44444443 2233333334455677777777777777664332 44566788999999999877 677888899999999


Q ss_pred             cccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHH-HhCc-HHHHHHHhcCCChhhHHHHHH
Q 044293          121 AMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAV-RAGA-VSELIHLIGSTEAEDLAGTSL  197 (236)
Q Consensus       121 s~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~-~~g~-i~~lv~ll~~~~~~~~~~~a~  197 (236)
                      ...- ..|..+.+.|+|..+.+++.+.++.++..++|+|+++.-..++..... -... ...++.+.++.+ .+++++|.
T Consensus       447 Vmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d-~~Vqeq~f  525 (678)
T KOG1293|consen  447 VMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPD-WAVQEQCF  525 (678)
T ss_pred             HhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCC-HHHHHHHH
Confidence            7654 678888899999999999999999999999999999998766544432 2333 334667777775 78999999


Q ss_pred             HHHHHHcCCh
Q 044293          198 AVLNLLARFD  207 (236)
Q Consensus       198 ~~L~~l~~~~  207 (236)
                      ..|+|+..+.
T Consensus       526 qllRNl~c~~  535 (678)
T KOG1293|consen  526 QLLRNLTCNS  535 (678)
T ss_pred             HHHHHhhcCc
Confidence            9999998764

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=2.9e-06  Score=79.49  Aligned_cols=205  Identities=12%  Similarity=0.105  Sum_probs=141.3

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-chh
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DLK   85 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~   85 (236)
                      +...+.+-.+|++.++..|..++.+|...+.+..+.-....  +.+++..+..|+.++|.+|-.|+.++.+++.+= ..-
T Consensus       347 p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l--~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i  424 (1075)
T KOG2171|consen  347 PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL--PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI  424 (1075)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH--HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence            34556667788899999999999999999988554433333  467888889999999999999999999999873 223


Q ss_pred             HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc--cCcHHHHHH-hhcCCCcHHHHHHHHHHHHHh
Q 044293           86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV--AGTVQVLVK-AVSAPSNPAGHHLLSSLAELV  162 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~  162 (236)
                      +.-...-.++.|+..+++..++.++.+|+.++.|++.... +..+.-  .+.+.+++. +++++++.+++.++.+|+..+
T Consensus       425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA  503 (1075)
T KOG2171|consen  425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVA  503 (1075)
T ss_pred             HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            3333445778899999887688999999999999988654 344432  466663443 445677889999999998888


Q ss_pred             cCCCChHHHHHhCcHHHHHHHhcCCChhhH---HHHHHHHHHHHcCChhhHHHHHh
Q 044293          163 QFHGNSTLAVRAGAVSELIHLIGSTEAEDL---AGTSLAVLNLLARFDEGMIALTK  215 (236)
Q Consensus       163 ~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~---~~~a~~~L~~l~~~~~~~~~i~~  215 (236)
                      ..-+..=.=.-...+|.|.+.|...+..+.   +-.++.++.-+ ...-+|++|..
T Consensus       504 ~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli-~~AVGke~F~~  558 (1075)
T KOG2171|consen  504 DAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLI-ARAVGKEKFLP  558 (1075)
T ss_pred             HHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHH-HHHhhhhhhhH
Confidence            643332221224678999999977543333   33444444322 22344555543

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.58  E-value=9e-06  Score=68.92  Aligned_cols=219  Identities=15%  Similarity=0.135  Sum_probs=162.7

Q ss_pred             hHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCChHHHHHHHhc------cCcHHHHHhhccCCChHHHHHHHHHHHhhCC
Q 044293            8 ETINNCVSRSQSDS-YEDQQKALQTLASITRVSPQYRSLLAQT------DGAISTLLGLSKSSSPIIRTLSLSILLNLSL   80 (236)
Q Consensus         8 ~~i~~lv~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~   80 (236)
                      +.+..++.+++..+ ++.....+..+-.+..++.. +..+.+.      .-.-+..+++|..++.-+.+.+.+++..++.
T Consensus        65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~s-r~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~  143 (442)
T KOG2759|consen   65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRS-RVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLAC  143 (442)
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCch-HHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence            56777888887543 55666677777766655432 2222111      1336778888888888888888888888877


Q ss_pred             CCchhHHhhhc-ccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC--CCcHHHHHHHHH
Q 044293           81 NPDLKQSLASM-ETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA--PSNPAGHHLLSS  157 (236)
Q Consensus        81 ~~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~a  157 (236)
                      ....+....+. =....|-+.++++.+.+....|+++|-.+...++.|-.+....++..++..+.+  .+...+...+-|
T Consensus       144 ~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifc  223 (442)
T KOG2759|consen  144 FGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFC  223 (442)
T ss_pred             hccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence            65443322211 133455566666557888899999999999999999999999999999999943  467888999999


Q ss_pred             HHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh-------hhHHHHHhcCCcHHHHHHHhhC
Q 044293          158 LAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD-------EGMIALTKTDQIVSLMVDVLKG  229 (236)
Q Consensus       158 L~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~-------~~~~~i~~~g~~i~~lv~~l~~  229 (236)
                      ++-|+-++...+.+-..+.|+.|.++++.+..+.+..-++.++.|+....       +...+++.++  +++-++.|+.
T Consensus       224 iWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~--v~k~l~~L~~  300 (442)
T KOG2759|consen  224 IWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK--VLKTLQSLEE  300 (442)
T ss_pred             HHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC--chHHHHHHHh
Confidence            99999999888888778999999999988755678889999999998655       4556788875  4777777754

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.58  E-value=1.3e-05  Score=76.63  Aligned_cols=181  Identities=14%  Similarity=0.085  Sum_probs=93.2

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--------------ChHHHHHHHhc-----cCcHHHHHhhccCCChHH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRV--------------SPQYRSLLAQT-----DGAISTLLGLSKSSSPII   67 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~--------------~~~~~~~i~~~-----~g~i~~Lv~lL~~~~~~~   67 (236)
                      .+.++.|+..|++++++++..|+.+|..+...              ++..|....+.     .+-.+.|+..|.++++.+
T Consensus       651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~V  730 (897)
T PRK13800        651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRV  730 (897)
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHH
Confidence            34567777777777777777777777655311              11222222110     022334444444445555


Q ss_pred             HHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCC
Q 044293           68 RTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPS  147 (236)
Q Consensus        68 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~  147 (236)
                      |..|+.+|..+             +..+.|...+.+. +.+++..++.+|..+....        ...++.|..++++++
T Consensus       731 R~~Av~aL~~~-------------~~~~~l~~~l~D~-~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d  788 (897)
T PRK13800        731 RIEAVRALVSV-------------DDVESVAGAATDE-NREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPD  788 (897)
T ss_pred             HHHHHHHHhcc-------------cCcHHHHHHhcCC-CHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCC
Confidence            54444444432             1123344444444 4555555555544443211        123555666666666


Q ss_pred             cHHHHHHHHHHHHHhcCCC---------------ChHHHHH-------hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293          148 NPAGHHLLSSLAELVQFHG---------------NSTLAVR-------AGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       148 ~~~~~~a~~aL~~L~~~~~---------------~~~~~~~-------~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~  205 (236)
                      +.++..|+.+|..+...+.               .|...++       ...++.|+.+|++.+ ..++..|+.+|..+..
T Consensus       789 ~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~-~~VR~~A~~aL~~~~~  867 (897)
T PRK13800        789 PLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPH-LDVRKAAVLALTRWPG  867 (897)
T ss_pred             HHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCC-HHHHHHHHHHHhccCC
Confidence            5566666655554432111               1111111       135688999998874 7899999999988744


Q ss_pred             ChhhH
Q 044293          206 FDEGM  210 (236)
Q Consensus       206 ~~~~~  210 (236)
                      +++.+
T Consensus       868 ~~~a~  872 (897)
T PRK13800        868 DPAAR  872 (897)
T ss_pred             CHHHH
Confidence            44433

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.56  E-value=3.2e-06  Score=75.07  Aligned_cols=152  Identities=14%  Similarity=0.148  Sum_probs=122.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-CchhHHhhhcccHHHH
Q 044293           19 SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDLKQSLASMETIYRL   97 (236)
Q Consensus        19 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~L   97 (236)
                      ..|.+....|+..+.+++..-...+..+... +++.+||++|..++..++..++++|+|+... .+-|..+...|||..+
T Consensus       388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~-dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l  466 (678)
T KOG1293|consen  388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRN-DVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL  466 (678)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCCccc-hhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence            4566677778888888877644455556665 8999999999888889999999999999886 4559999999999999


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhcccchhhhh--hcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC-CCChHHHH
Q 044293           98 NWIIQSSSSQETVKLASSLICSLAMLDKNKAR--FGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF-HGNSTLAV  172 (236)
Q Consensus        98 ~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~--i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~-~~~~~~~~  172 (236)
                      ..++.+. +..++..+.|+|+++....++...  ....=....++.+..+++.++++.+...|+||.-. .+....++
T Consensus       467 ~s~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll  543 (678)
T KOG1293|consen  467 ESMLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLL  543 (678)
T ss_pred             HHHhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence            9999998 899999999999999988755443  33334457788888899999999999999999764 34333333

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.55  E-value=5.6e-06  Score=79.06  Aligned_cols=166  Identities=16%  Similarity=0.075  Sum_probs=100.1

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS   87 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~   87 (236)
                      ..++.|++.|+++++.+|+.|+..|..+.           .. +.++.|+..|+++++.++..|+.+|..+.....    
T Consensus       621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~-~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----  684 (897)
T PRK13800        621 PSVAELAPYLADPDPGVRRTAVAVLTETT-----------PP-GFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----  684 (897)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------ch-hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence            46788999999999999999988888763           22 578888888988899999988888877632111    


Q ss_pred             hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch-------------hh----hhhcccCcHHHHHHhhcCCCcHH
Q 044293           88 LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK-------------NK----ARFGVAGTVQVLVKAVSAPSNPA  150 (236)
Q Consensus        88 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~-------------~~----~~i~~~g~i~~Lv~lL~~~~~~~  150 (236)
                           ..+.|...|++. ++.++..|+.+|..+...+.             .+    ..++..+..+.|...+.++++.+
T Consensus       685 -----~~~~L~~~L~~~-d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~V  758 (897)
T PRK13800        685 -----PAPALRDHLGSP-DPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREV  758 (897)
T ss_pred             -----chHHHHHHhcCC-CHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHH
Confidence                 123445555554 55666655555554421100             00    00000011233444444445555


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          151 GHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       151 ~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                      +..++.+|..+...        ....++.|..++++.+ +.++..|+..|..+.
T Consensus       759 R~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d-~~VR~aA~~aLg~~g  803 (897)
T PRK13800        759 RIAVAKGLATLGAG--------GAPAGDAVRALTGDPD-PLVRAAALAALAELG  803 (897)
T ss_pred             HHHHHHHHHHhccc--------cchhHHHHHHHhcCCC-HHHHHHHHHHHHhcC
Confidence            55555555444331        1123677888888774 778888888887763

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.53  E-value=1.7e-06  Score=77.74  Aligned_cols=186  Identities=18%  Similarity=0.175  Sum_probs=96.7

Q ss_pred             chHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhh-CCC
Q 044293            3 APRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNL-SLN   81 (236)
Q Consensus         3 ~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l-~~~   81 (236)
                      ++-++..++.+.+.+.++++-+|.+|+.++..+...+++.    .+. ++++.+..+|.+.++.++..|+.++..+ ..+
T Consensus       109 ~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~----~~~-~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~  183 (526)
T PF01602_consen  109 PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL----VED-ELIPKLKQLLSDKDPSVVSAALSLLSEIKCND  183 (526)
T ss_dssp             HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC----HHG-GHHHHHHHHTTHSSHHHHHHHHHHHHHHHCTH
T ss_pred             cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH----HHH-HHHHHHhhhccCCcchhHHHHHHHHHHHccCc
Confidence            4455667777888888888888888888888887765442    232 2688888888888888888888888888 111


Q ss_pred             CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293           82 PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL  161 (236)
Q Consensus        82 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L  161 (236)
                      +... . .-...++.|.+++... ++-.+..++.+|..++........  ....++.+..++++.++.+.-.|+.++..+
T Consensus       184 ~~~~-~-~~~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~--~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l  258 (526)
T PF01602_consen  184 DSYK-S-LIPKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPEDAD--KNRIIEPLLNLLQSSSPSVVYEAIRLIIKL  258 (526)
T ss_dssp             HHHT-T-HHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhh-h-hHHHHHHHhhhccccc-chHHHHHHHHHHHhcccCChhhhh--HHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            1111 0 0122233333333333 455555555555555443311110  023344444444443334444444444433


Q ss_pred             hcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          162 VQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       162 ~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                      ...+.     .-..+++.++.++.+++ +.++-.++..|..++
T Consensus       259 ~~~~~-----~~~~~~~~L~~lL~s~~-~nvr~~~L~~L~~l~  295 (526)
T PF01602_consen  259 SPSPE-----LLQKAINPLIKLLSSSD-PNVRYIALDSLSQLA  295 (526)
T ss_dssp             SSSHH-----HHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHC
T ss_pred             hcchH-----HHHhhHHHHHHHhhccc-chhehhHHHHHHHhh
Confidence            33222     22233444444444332 334444444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.52  E-value=2.2e-07  Score=53.66  Aligned_cols=40  Identities=30%  Similarity=0.438  Sum_probs=37.7

Q ss_pred             ChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhC
Q 044293           39 SPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLS   79 (236)
Q Consensus        39 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~   79 (236)
                      ++++++.+.+. |++|.|+.+|+++++++++.|+++|.||+
T Consensus         1 ~~~~~~~i~~~-g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEA-GGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHT-THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHc-ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            46889999998 99999999999999999999999999986

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.52  E-value=1.5e-07  Score=54.38  Aligned_cols=41  Identities=24%  Similarity=0.259  Sum_probs=37.6

Q ss_pred             CCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 044293           81 NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM  122 (236)
Q Consensus        81 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~  122 (236)
                      +++++..+++.|++|+|+++|+++ ++++++.|+|+|.||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence            357889999999999999999988 89999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.50  E-value=1.7e-06  Score=74.31  Aligned_cols=164  Identities=13%  Similarity=0.107  Sum_probs=131.5

Q ss_pred             HhHHHHHHHHhcCCCHH--HHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCCc
Q 044293            7 RETINNCVSRSQSDSYE--DQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNPD   83 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~--~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~   83 (236)
                      ++....|+.+++.++.+  ++.++.+.|.....  .+|++.+... | ...++.+-.. ..++.++..+.+|.|+-.|.+
T Consensus       179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~-~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe  254 (832)
T KOG3678|consen  179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARI-G-LGVILNLAKEREPVELARSVAGILEHMFKHSE  254 (832)
T ss_pred             cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhc-c-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence            57888999999987744  58889999987765  3688888875 5 6777666543 356888899999999999986


Q ss_pred             h-hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc--hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293           84 L-KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD--KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE  160 (236)
Q Consensus        84 ~-~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~  160 (236)
                      . +..++..|++..++--++.. ++.+..+|+.+|.|++.+.  ..+..+.+..+-++|+-+-.+.+.-.+.+||.+...
T Consensus       255 et~~~Lvaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~v  333 (832)
T KOG3678|consen  255 ETCQRLVAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAV  333 (832)
T ss_pred             HHHHHHHhhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhh
Confidence            4 88899999999998888888 8999999999999998765  567778888888999998888877788899999988


Q ss_pred             HhcCCCChHHHHHhC
Q 044293          161 LVQFHGNSTLAVRAG  175 (236)
Q Consensus       161 L~~~~~~~~~~~~~g  175 (236)
                      |+..++.-..+.+.|
T Consensus       334 lat~KE~E~~VrkS~  348 (832)
T KOG3678|consen  334 LATNKEVEREVRKSG  348 (832)
T ss_pred             hhhhhhhhHHHhhcc
Confidence            887666444444343

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=2.6e-05  Score=63.74  Aligned_cols=218  Identities=12%  Similarity=0.102  Sum_probs=150.8

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      ...++.+.++++...+  .+.|+.+|.+++.+ +..+..+.+.  .+..+++.+.++....-...+.+|.|++.+++...
T Consensus        43 ~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll~~--~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~  117 (353)
T KOG2973|consen   43 EALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLLQD--LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVA  117 (353)
T ss_pred             hhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHHHH--HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHH
Confidence            3467778888876665  56688999999986 6778888764  88888888877766667788899999999988754


Q ss_pred             Hhh---h----cccHHHHHHHHhccCC-HHHHHHHHHHHHHhcccchhhhhhcccCcHH--HHHHhhcCCCcHHHHHHHH
Q 044293           87 SLA---S----METIYRLNWIIQSSSS-QETVKLASSLICSLAMLDKNKARFGVAGTVQ--VLVKAVSAPSNPAGHHLLS  156 (236)
Q Consensus        87 ~i~---~----~g~i~~L~~lL~~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~--~Lv~lL~~~~~~~~~~a~~  156 (236)
                      .+.   .    .|.+.......+++-+ ..-..+.+.++.|++.....|..+.+...++  .|+.+=..++.--+...+.
T Consensus       118 ~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~Gvag  197 (353)
T KOG2973|consen  118 ALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAG  197 (353)
T ss_pred             HHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHH
Confidence            432   2    3455555555555422 2344678889999999998888888755222  2222222123233467788


Q ss_pred             HHHHHhcCCCChHHHHH--hCcHHHHH---------------------HHhcCC----ChhhHHHHHHHHHHHHcCChhh
Q 044293          157 SLAELVQFHGNSTLAVR--AGAVSELI---------------------HLIGST----EAEDLAGTSLAVLNLLARFDEG  209 (236)
Q Consensus       157 aL~~L~~~~~~~~~~~~--~g~i~~lv---------------------~ll~~~----~~~~~~~~a~~~L~~l~~~~~~  209 (236)
                      +|.|.|....+...+..  ...+|.++                     +++...    +++.++..-+.+|..||....+
T Consensus       198 tlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~G  277 (353)
T KOG2973|consen  198 TLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAG  277 (353)
T ss_pred             HHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHh
Confidence            89999987776666554  23444433                     334311    2467899999999999999999


Q ss_pred             HHHHHhcCCcHHHHHHHhhCCc
Q 044293          210 MIALTKTDQIVSLMVDVLKGRS  231 (236)
Q Consensus       210 ~~~i~~~g~~i~~lv~~l~~~~  231 (236)
                      |+.++.-|+  .++++-+..|.
T Consensus       278 Re~lR~kgv--YpilRElhk~e  297 (353)
T KOG2973|consen  278 REVLRSKGV--YPILRELHKWE  297 (353)
T ss_pred             HHHHHhcCc--hHHHHHHhcCC
Confidence            999999874  77777776554

>PF05536 Neurochondrin: Neurochondrin

Probab=98.40  E-value=1.3e-05  Score=72.12  Aligned_cols=154  Identities=18%  Similarity=0.175  Sum_probs=120.4

Q ss_pred             cHHHHHhhccCCChHHHHHHHHHHHhhCCCCch----hHHhhhcccHHHHHHHHhccC------CHHHHHHHHHHHHHhc
Q 044293           52 AISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL----KQSLASMETIYRLNWIIQSSS------SQETVKLASSLICSLA  121 (236)
Q Consensus        52 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~----~~~i~~~g~i~~L~~lL~~~~------~~~~~~~a~~~L~~Ls  121 (236)
                      .++.-+.+|+..+.+-+-.++..+..+...++.    ++.|.+.=|.+-+-++|+++.      ..+.+..|..+|..+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            467778889888855555566666677766542    345667666788888888742      3566777889999999


Q ss_pred             ccchhhhhhcccCcHHHHHHhhcCCCc-HHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHH
Q 044293          122 MLDKNKARFGVAGTVQVLVKAVSAPSN-PAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVL  200 (236)
Q Consensus       122 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L  200 (236)
                      .+++....=.-.+-||.|++.+.+.+. .....|..+|..++.++++++.+++.|+++.|.+.+.+.  +...+.|+.+|
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~--~~~~E~Al~lL  163 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ--SFQMEIALNLL  163 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC--cchHHHHHHHH
Confidence            987655443236789999999998877 889999999999999999999999999999999999874  35678999999


Q ss_pred             HHHcCCh
Q 044293          201 NLLARFD  207 (236)
Q Consensus       201 ~~l~~~~  207 (236)
                      .+++...
T Consensus       164 ~~Lls~~  170 (543)
T PF05536_consen  164 LNLLSRL  170 (543)
T ss_pred             HHHHHhc
Confidence            9987643

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.39  E-value=2.4e-05  Score=70.36  Aligned_cols=187  Identities=21%  Similarity=0.140  Sum_probs=134.6

Q ss_pred             hHHHh-HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC
Q 044293            4 PRVRE-TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP   82 (236)
Q Consensus         4 ~~~~~-~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~   82 (236)
                      +.++. .++.+.++|++.++.++..|+.++..+ ..+++....+..  ..++.|.+++...+|-.+...+.++..++..+
T Consensus       147 ~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~--~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~  223 (526)
T PF01602_consen  147 DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIP--KLIRILCQLLSDPDPWLQIKILRLLRRYAPME  223 (526)
T ss_dssp             CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHH--HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS
T ss_pred             HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHH--HHHHHhhhcccccchHHHHHHHHHHHhcccCC
Confidence            44455 599999999999999999999999998 333333223332  46777777778889999999999999887765


Q ss_pred             chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293           83 DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV  162 (236)
Q Consensus        83 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~  162 (236)
                      .....-  ...++.+..++++. ++.+.-.|+.++.++.....     .-..++++|++++.+.++.++..++.+|..++
T Consensus       224 ~~~~~~--~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~  295 (526)
T PF01602_consen  224 PEDADK--NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLA  295 (526)
T ss_dssp             HHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHC
T ss_pred             hhhhhH--HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhh
Confidence            442211  56788888888877 78888899999998877665     23567899999999888889999999999998


Q ss_pred             cCCCChHHHHHhCcHHHHHHHhc-CCChhhHHHHHHHHHHHHcCCh
Q 044293          163 QFHGNSTLAVRAGAVSELIHLIG-STEAEDLAGTSLAVLNLLARFD  207 (236)
Q Consensus       163 ~~~~~~~~~~~~g~i~~lv~ll~-~~~~~~~~~~a~~~L~~l~~~~  207 (236)
                      ...   ...+.  .....+..+. +. +..++..++.+|..++...
T Consensus       296 ~~~---~~~v~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~~~  335 (526)
T PF01602_consen  296 QSN---PPAVF--NQSLILFFLLYDD-DPSIRKKALDLLYKLANES  335 (526)
T ss_dssp             CHC---HHHHG--THHHHHHHHHCSS-SHHHHHHHHHHHHHH--HH
T ss_pred             ccc---chhhh--hhhhhhheecCCC-ChhHHHHHHHHHhhccccc
Confidence            865   22222  2222333444 44 4678888888888887543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.34  E-value=4.2e-05  Score=64.96  Aligned_cols=218  Identities=16%  Similarity=0.175  Sum_probs=152.5

Q ss_pred             HHHHHhcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc-C-CChHHHHHHHHHHHhhCCCCchhHHh
Q 044293           12 NCVSRSQS-DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK-S-SSPIIRTLSLSILLNLSLNPDLKQSL   88 (236)
Q Consensus        12 ~lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~-~~~~~~~~a~~~L~~l~~~~~~~~~i   88 (236)
                      .+...+++ .+.+...-++.+|+.+... ++.|..+..+ +++..++..+. + .+-.+|-..+-+++.|+.++.....+
T Consensus       160 ~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~a-dg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~  237 (442)
T KOG2759|consen  160 FLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIA-DGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKL  237 (442)
T ss_pred             HHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeec-CcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHH
Confidence            34444444 4455566688899999987 6789999998 89999998883 3 35578888999999999999888888


Q ss_pred             hhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-------hhhhhhcccCcHHHHHHhhcCC--CcHHHHHHHHHH-
Q 044293           89 ASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-------KNKARFGVAGTVQVLVKAVSAP--SNPAGHHLLSSL-  158 (236)
Q Consensus        89 ~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-------~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL-  158 (236)
                      ...+.|+.|.++++.+..+.+.+-+++++.|+....       +...++.. +.+++-++.|...  +++.....+.-| 
T Consensus       238 ~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkysDEDL~~di~~L~  316 (442)
T KOG2759|consen  238 KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERKYSDEDLVDDIEFLT  316 (442)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            888999999999998755678888999999997755       22334444 4456666666542  333222222222 


Q ss_pred             -------HHHhcC------------------------CCChHHHHH--hCcHHHHHHHhcCCChhhHHHHHHHHHHHHc-
Q 044293          159 -------AELVQF------------------------HGNSTLAVR--AGAVSELIHLIGSTEAEDLAGTSLAVLNLLA-  204 (236)
Q Consensus       159 -------~~L~~~------------------------~~~~~~~~~--~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~-  204 (236)
                             ..||+.                        .+|...+-+  ...+..|+.+|..+++|.+.--|+-=+.... 
T Consensus       317 e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr  396 (442)
T KOG2759|consen  317 EKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVR  396 (442)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHH
Confidence                   122221                        123444443  3468889999988755655555555555554 


Q ss_pred             CChhhHHHHHhcCCcHHHHHHHhhCCccc
Q 044293          205 RFDEGMIALTKTDQIVSLMVDVLKGRSMF  233 (236)
Q Consensus       205 ~~~~~~~~i~~~g~~i~~lv~~l~~~~~~  233 (236)
                      ..|+++..+-+.|| =..+.++|.+.+|.
T Consensus       397 ~yP~gk~vv~k~gg-Ke~vM~Llnh~d~~  424 (442)
T KOG2759|consen  397 HYPEGKAVVEKYGG-KERVMNLLNHEDPE  424 (442)
T ss_pred             hCchHhHHHHHhch-HHHHHHHhcCCCch
Confidence            68999999999999 68889999887764

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=0.00012  Score=62.65  Aligned_cols=216  Identities=11%  Similarity=0.090  Sum_probs=157.6

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh---------HHHHHHHhccCcHHHHHhhccCCCh------HHHHHHH
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSP---------QYRSLLAQTDGAISTLLGLSKSSSP------IIRTLSL   72 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~---------~~~~~i~~~~g~i~~Lv~lL~~~~~------~~~~~a~   72 (236)
                      .+++.++.+|.+++.++-...+..|+.++..+-         ..-.++++. ++++.|++=+..-+.      .-..+++
T Consensus       125 n~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg-~vlaLLvqnveRLdEsvkeea~gv~~~L  203 (536)
T KOG2734|consen  125 NAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDG-QVLALLVQNVERLDESVKEEADGVHNTL  203 (536)
T ss_pred             ccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhc-cHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence            478999999999999999999999999986521         234566776 888888876543222      2245677


Q ss_pred             HHHHhhCCCC-chhHHhhhcccHHHHHHHHh-ccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcC---C
Q 044293           73 SILLNLSLNP-DLKQSLASMETIYRLNWIIQ-SSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSA---P  146 (236)
Q Consensus        73 ~~L~~l~~~~-~~~~~i~~~g~i~~L~~lL~-~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~---~  146 (236)
                      .++-|+.... +....+++.|.+.+|+.-+. ...-...+.+|..+|.-+-.+. +++..++...++..+++-+..   .
T Consensus       204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~  283 (536)
T KOG2734|consen  204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH  283 (536)
T ss_pred             HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence            7777876654 55788888888888887543 2212356778888888665554 588888888999999987742   1


Q ss_pred             C---c---HHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh---hhHHHHHhcC
Q 044293          147 S---N---PAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD---EGMIALTKTD  217 (236)
Q Consensus       147 ~---~---~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~---~~~~~i~~~g  217 (236)
                      +   +   ...++-..+|+.+-..+.|+..+....++..+.-+++..  ...+-.++++|.....++   +++..+++..
T Consensus       284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~K--k~sr~SalkvLd~am~g~~gt~~C~kfVe~l  361 (536)
T KOG2734|consen  284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREK--KVSRGSALKVLDHAMFGPEGTPNCNKFVEIL  361 (536)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHH--HHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            2   1   244677777877778999999999988888777777653  345678999999887665   5788899988


Q ss_pred             CcHHHHHHHh
Q 044293          218 QIVSLMVDVL  227 (236)
Q Consensus       218 ~~i~~lv~~l  227 (236)
                      | ...+...+
T Consensus       362 G-LrtiF~~F  370 (536)
T KOG2734|consen  362 G-LRTIFPLF  370 (536)
T ss_pred             h-HHHHHHHH
Confidence            8 56665533

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=0.00015  Score=66.08  Aligned_cols=210  Identities=18%  Similarity=0.151  Sum_probs=161.6

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK   85 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~   85 (236)
                      ++.|.-++..+...+=.+|.++...|..+... ..+.+.++...|-+|..|+++|......+|..++-.|..+..+....
T Consensus       121 qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~I  200 (970)
T KOG0946|consen  121 QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSI  200 (970)
T ss_pred             chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchH
Confidence            56888999999888888999999999887765 56788999999999999999999888889999999999999988775


Q ss_pred             HHhh-hcccHHHHHHHHhccC--C-HHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCC---C-------cH-
Q 044293           86 QSLA-SMETIYRLNWIIQSSS--S-QETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAP---S-------NP-  149 (236)
Q Consensus        86 ~~i~-~~g~i~~L~~lL~~~~--~-~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~---~-------~~-  149 (236)
                      +.++ =.++-..|..++....  + --+.+.|...|-||-.+. .|..-+.+.+.||.|.++|...   +       +. 
T Consensus       201 QKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qr  280 (970)
T KOG0946|consen  201 QKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQR  280 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHH
Confidence            5544 4568889999988532  2 246788999999998776 6777777899999999998642   2       11 


Q ss_pred             --HHHHHHHHHHHHhcCC-------CChHHHHHhCcHHHHHHHhcCC-ChhhHHHHHHHHHHHHcC-ChhhHHHHHhc
Q 044293          150 --AGHHLLSSLAELVQFH-------GNSTLAVRAGAVSELIHLIGST-EAEDLAGTSLAVLNLLAR-FDEGMIALTKT  216 (236)
Q Consensus       150 --~~~~a~~aL~~L~~~~-------~~~~~~~~~g~i~~lv~ll~~~-~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~  216 (236)
                        -...++.+++.|....       .+.+.+.+.+++..|..++.++ -..+++..++-+.+++.+ +..++..|...
T Consensus       281 v~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v  358 (970)
T KOG0946|consen  281 VQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADV  358 (970)
T ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhc
Confidence              1234455555554422       1345677789999999988765 346788888888888875 55788887754

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.28  E-value=6.1e-06  Score=55.73  Aligned_cols=87  Identities=18%  Similarity=0.224  Sum_probs=70.2

Q ss_pred             HHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHh
Q 044293           10 INNCVSRS-QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSL   88 (236)
Q Consensus        10 i~~lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i   88 (236)
                      |+.|++.| +++++.++..++++|..+.           .. ..++.|+.+++++++.++..|+.+|..+          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~-~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------   58 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DP-EAIPALIELLKDEDPMVRRAAARALGRI----------   58 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HH-HHHHHHHHHHTSSSHHHHHHHHHHHHCC----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CH-hHHHHHHHHHcCCCHHHHHHHHHHHHHh----------
Confidence            68899999 7889999999988888331           11 4689999999999999999999999987          


Q ss_pred             hhcccHHHHHHHHhccCCHHHHHHHHHHHH
Q 044293           89 ASMETIYRLNWIIQSSSSQETVKLASSLIC  118 (236)
Q Consensus        89 ~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~  118 (236)
                      .....++.|.++++++.+..++..|+.+|.
T Consensus        59 ~~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   59 GDPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            245689999999988745667888888763

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.28  E-value=1.4e-05  Score=68.81  Aligned_cols=172  Identities=14%  Similarity=0.104  Sum_probs=138.8

Q ss_pred             HHHHHhccCcHHHHHhhccCCChHH--HHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 044293           43 RSLLAQTDGAISTLLGLSKSSSPII--RTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSL  120 (236)
Q Consensus        43 ~~~i~~~~g~i~~Lv~lL~~~~~~~--~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~L  120 (236)
                      ...+... |++..|+.++..++-+.  +..+...|-.+ ...+|+..++..| +..++.+-+..+.++.....++.|.++
T Consensus       173 CD~iR~~-~~lD~Llrmf~aPn~et~vRve~~rlLEq~-~~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLD-GGLDLLLRMFQAPNLETSVRVEAARLLEQI-LVAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhcc-chHHHHHHHHhCCchhHHHHHHHHHHHHHH-HhhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            4556665 99999999998876544  77788888765 3457888888766 666666666554689999999999998


Q ss_pred             cccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC--CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHH
Q 044293          121 AMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF--HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSL  197 (236)
Q Consensus       121 s~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~--~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~  197 (236)
                      -.+. +.+..+.+.|++..++--.+..++...++|+.+|.|+..+  ...++.|++..+..+|..|-.+.| .-++-+|+
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skD-el~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKD-ELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchH-HHHHHHHH
Confidence            7654 6788888999999999888888899999999999999985  467888999999999998887764 45667788


Q ss_pred             HHHHHHcCChhhHHHHHhcCC
Q 044293          198 AVLNLLARFDEGMIALTKTDQ  218 (236)
Q Consensus       198 ~~L~~l~~~~~~~~~i~~~g~  218 (236)
                      -+.+.++.+.+.-..+.+.|.
T Consensus       329 lAV~vlat~KE~E~~VrkS~T  349 (832)
T KOG3678|consen  329 LAVAVLATNKEVEREVRKSGT  349 (832)
T ss_pred             HHHhhhhhhhhhhHHHhhccc
Confidence            888899999988888888874

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.27  E-value=7.2e-06  Score=55.34  Aligned_cols=88  Identities=16%  Similarity=0.211  Sum_probs=69.9

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHH
Q 044293           94 IYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVR  173 (236)
Q Consensus        94 i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~  173 (236)
                      |+.|++.|..+.++.++..++.+|..+          ....+++.|+.++.++++.++..|+++|..+.          .
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG----------D   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence            688999994443899999999998833          22366999999999999999999999998773          3


Q ss_pred             hCcHHHHHHHhcCCChhhHHHHHHHHHH
Q 044293          174 AGAVSELIHLIGSTEAEDLAGTSLAVLN  201 (236)
Q Consensus       174 ~g~i~~lv~ll~~~~~~~~~~~a~~~L~  201 (236)
                      ..+++.|.+++.++++..++..|+.+|.
T Consensus        61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            5588999999988655566788888774

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=0.00018  Score=67.51  Aligned_cols=221  Identities=17%  Similarity=0.171  Sum_probs=152.8

Q ss_pred             HHHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293            5 RVRETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD   83 (236)
Q Consensus         5 ~~~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~   83 (236)
                      ..-+.-+-+...+. ..++.++.-|+..+..++.+.+ --..+++. |.+..|+.+|.+ .|..+..++.+|+.|+..++
T Consensus      1768 ~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~-Cv~~~a~~-~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~ 1844 (2235)
T KOG1789|consen 1768 LLIGNFPLLITYLRCRKHPKLQILALQVILLATANKE-CVTDLATC-NVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQ 1844 (2235)
T ss_pred             hhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccH-HHHHHHhh-hHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcH
Confidence            33445555666665 4677888889999988887643 45667777 889999998865 67889999999999999988


Q ss_pred             hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc---------------------------------------
Q 044293           84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD---------------------------------------  124 (236)
Q Consensus        84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~---------------------------------------  124 (236)
                      --..-.+.|++.-+.+++-....++.+..++..+..|..++                                       
T Consensus      1845 i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~En 1924 (2235)
T KOG1789|consen 1845 IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSEN 1924 (2235)
T ss_pred             HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCC
Confidence            75555677777777766644435666666666655543211                                       


Q ss_pred             --------------------------------------------------------------------------------
Q 044293          125 --------------------------------------------------------------------------------  124 (236)
Q Consensus       125 --------------------------------------------------------------------------------  124 (236)
                                                                                                      
T Consensus      1925 PELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~L 2004 (2235)
T KOG1789|consen 1925 PELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTEL 2004 (2235)
T ss_pred             cccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---------------------------------hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHH
Q 044293          125 ---------------------------------KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLA  171 (236)
Q Consensus       125 ---------------------------------~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~  171 (236)
                                                       .-..++...|-+|.++.-+...+...-..|+++|..|+.+.--+..|
T Consensus      2005 Lek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AM 2084 (2235)
T KOG1789|consen 2005 LEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAM 2084 (2235)
T ss_pred             HHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHH
Confidence                                             00011112344444444333333333367888899999888888889


Q ss_pred             HHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC--ChhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293          172 VRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR--FDEGMIALTKTDQIVSLMVDVLKGRS  231 (236)
Q Consensus       172 ~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~~i~~lv~~l~~~~  231 (236)
                      .+...+..++..++..  +...-.|+.+|..+..  .++--.+..+.| ++|.|+.+|...+
T Consensus      2085 A~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~g-LvpyLL~LLd~~t 2143 (2235)
T KOG1789|consen 2085 AQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCG-LVPYLLQLLDSST 2143 (2235)
T ss_pred             hccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccC-cHHHHHHHhcccc
Confidence            8888888899988765  3566788899988764  346677788887 6999999997543

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.24  E-value=0.00011  Score=63.10  Aligned_cols=218  Identities=15%  Similarity=0.133  Sum_probs=147.1

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC--ChHHHHHHHHHHHhhCCCCch
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS--SPIIRTLSLSILLNLSLNPDL   84 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~   84 (236)
                      ....+.+..++-+++.+++..|++.++.+..+ +..-+.+.+. +.=-.++.-|..+  +..-++.|+..+..+...+++
T Consensus        24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l-~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~  101 (371)
T PF14664_consen   24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKL-HIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG  101 (371)
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHc-CCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence            34455555555556688999999999999887 4566777776 6444455556543  334477888888877666554


Q ss_pred             hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293           85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF  164 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~  164 (236)
                      ...+ ..|.+..++.+..+. ++..+.-|..+|..++..+  -+.+..+||+..|++.+.++.....+..+.++.++-.+
T Consensus       102 ~~~~-~~~vvralvaiae~~-~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~  177 (371)
T PF14664_consen  102 PKEI-PRGVVRALVAIAEHE-DDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS  177 (371)
T ss_pred             cccC-CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC
Confidence            3333 678999999999987 7889999999999999854  56667799999999999987767778888999999999


Q ss_pred             CCChHHHHHhCcHHHHHHHhcCC------Chh--hHHHHHHHHHHHHcCChhhHHHHHhcC--CcHHHHHHHhhCCc
Q 044293          165 HGNSTLAVRAGAVSELIHLIGST------EAE--DLAGTSLAVLNLLARFDEGMIALTKTD--QIVSLMVDVLKGRS  231 (236)
Q Consensus       165 ~~~~~~~~~~g~i~~lv~ll~~~------~~~--~~~~~a~~~L~~l~~~~~~~~~i~~~g--~~i~~lv~~l~~~~  231 (236)
                      |..|+.+.-.--+..++.-+.+.      ++.  +....+..++..+-.+=.|--.+...+  | +..|+..|+..+
T Consensus       178 p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~-lksLv~~L~~p~  253 (371)
T PF14664_consen  178 PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRG-LKSLVDSLRLPN  253 (371)
T ss_pred             cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchH-HHHHHHHHcCCC
Confidence            99998876544455555554332      112  233445555554444433333333222  4 566666665443

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=4.6e-05  Score=68.11  Aligned_cols=177  Identities=13%  Similarity=0.066  Sum_probs=130.9

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHH-----HHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSL-----LAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN   81 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~-----i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~   81 (236)
                      ++.+|.|..+|.+++...++.|..+|++.+.++++.-..     ..  +-.+|.++.+.++++|.+|..|+.++..+-..
T Consensus       127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl--~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~  204 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPL--NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII  204 (885)
T ss_pred             hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCch--HHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence            678999999999999889999999999999886653221     12  24799999999999999999999988765443


Q ss_pred             CchhHHhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293           82 PDLKQSLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE  160 (236)
Q Consensus        82 ~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~  160 (236)
                      .. ..... -..+++.+..+-... ++++|++.+.++..|....-.|-.=.-.+.++.++..-++.+..+--.|+.....
T Consensus       205 ~~-qal~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla  282 (885)
T KOG2023|consen  205 QT-QALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA  282 (885)
T ss_pred             Cc-HHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence            22 22222 234677777766555 8999999999999988765323221226788888888888888888899999999


Q ss_pred             HhcCCCChHHHHH--hCcHHHHHHHhcCC
Q 044293          161 LVQFHGNSTLAVR--AGAVSELIHLIGST  187 (236)
Q Consensus       161 L~~~~~~~~~~~~--~g~i~~lv~ll~~~  187 (236)
                      ++..+--+..+..  ...+|.|++=+..+
T Consensus       283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ys  311 (885)
T KOG2023|consen  283 LAEQPICKEVLQPYLDKLIPVLLSGMVYS  311 (885)
T ss_pred             HhcCcCcHHHHHHHHHHHHHHHHccCccc
Confidence            9988844444433  47788888866543

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.22  E-value=0.00016  Score=62.15  Aligned_cols=192  Identities=16%  Similarity=0.133  Sum_probs=144.9

Q ss_pred             HHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccC-CHHH
Q 044293           31 TLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS-SQET  109 (236)
Q Consensus        31 ~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~~  109 (236)
                      .|..+...++..+..+.-. ...+.+..++=+++.+++..+.+++..+..+++.-..+.+.+.-..++.-|..+. +..-
T Consensus         6 ~Lv~l~~~~p~l~~~~~~~-~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~E   84 (371)
T PF14664_consen    6 DLVDLLKRHPTLKYDLVLS-FFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVE   84 (371)
T ss_pred             HHHHHHHhCchhhhhhhHH-HHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHH
Confidence            4555555566556555544 4555555444344599999999999999999998888888877777777777653 5677


Q ss_pred             HHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCCh
Q 044293          110 VKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEA  189 (236)
Q Consensus       110 ~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~  189 (236)
                      +++|...+..+...+++...+ -.|.+..++.+..+.+++.+..|+.+|..++..  +-+.+.++|++..+++.+.++. 
T Consensus        85 R~QALkliR~~l~~~~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~~-  160 (371)
T PF14664_consen   85 REQALKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALIDGS-  160 (371)
T ss_pred             HHHHHHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhcc-
Confidence            889999999887775443333 469999999999999989999999999999983  3456678999999999998764 


Q ss_pred             hhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhh
Q 044293          190 EDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLK  228 (236)
Q Consensus       190 ~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~  228 (236)
                      .++.+.++.++..+..+|..|+-+...-. ++.+..-+.
T Consensus       161 ~~~~~~l~~~lL~lLd~p~tR~yl~~~~d-L~~l~apft  198 (371)
T PF14664_consen  161 FSISESLLDTLLYLLDSPRTRKYLRPGFD-LESLLAPFT  198 (371)
T ss_pred             HhHHHHHHHHHHHHhCCcchhhhhcCCcc-HHHHHHhhh
Confidence            45888999999999999999887665333 455554443

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=5.6e-05  Score=66.37  Aligned_cols=202  Identities=13%  Similarity=0.101  Sum_probs=142.8

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      .+..+-|..+|.+++.++|..+-.+|..+..+ -.+.......+..++.++.-+.++++.+|..|+.-+..+..-+..--
T Consensus       207 ~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e-I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~  285 (675)
T KOG0212|consen  207 PSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAE-IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL  285 (675)
T ss_pred             hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch
Confidence            45667788899999999987666656555443 12233332335789999999999999999999888877666554433


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHH---HHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLAS---SLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~---~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~  163 (236)
                      ...-.|.+..++.++.+.+...++..+.   ..|..+...+..+..+.-...+..|.+.+.+....++..++.-+..|=.
T Consensus       286 l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~  365 (675)
T KOG0212|consen  286 LLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYH  365 (675)
T ss_pred             hhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHh
Confidence            3334566666666665542112343333   2355555555445555446788899999998888888888888877777


Q ss_pred             CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhH
Q 044293          164 FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGM  210 (236)
Q Consensus       164 ~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  210 (236)
                      ..++.-...-....+.|+.-|++.+ .++...++..+.++|.+++.+
T Consensus       366 ~~p~ql~~h~~~if~tLL~tLsd~s-d~vvl~~L~lla~i~~s~~~~  411 (675)
T KOG0212|consen  366 KAPGQLLVHNDSIFLTLLKTLSDRS-DEVVLLALSLLASICSSSNSP  411 (675)
T ss_pred             hCcchhhhhccHHHHHHHHhhcCch-hHHHHHHHHHHHHHhcCcccc
Confidence            6677666666788999999999875 578899999999999887654

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.19  E-value=2.1e-05  Score=63.00  Aligned_cols=182  Identities=12%  Similarity=0.120  Sum_probs=115.9

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCC--hHHHHHHHhc-cCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccH
Q 044293           18 QSDSYEDQQKALQTLASITRVS--PQYRSLLAQT-DGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETI   94 (236)
Q Consensus        18 ~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i   94 (236)
                      .+.+.+.+.+|+..|+.+..++  ......+.+. ...++.+...+++....+...|+.++..++..-...-.-.-...+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            5678999999999999998876  2333333321 134456666776667778889999999888765443222245688


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCc-HHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC-ChHHHH
Q 044293           95 YRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGT-VQVLVKAVSAPSNPAGHHLLSSLAELVQFHG-NSTLAV  172 (236)
Q Consensus        95 ~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~~~  172 (236)
                      |.|++.+.++ ...++..|..+|..+...-....     .. ++.+...+.+.|+.++..++..+..+...-. ....+-
T Consensus        97 ~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~-----~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~  170 (228)
T PF12348_consen   97 PPLLKKLGDS-KKFIREAANNALDAIIESCSYSP-----KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ  170 (228)
T ss_dssp             HHHHHGGG----HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred             HHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence            9999999887 78899999999998887543111     22 5667777888999999999999988766332 212111


Q ss_pred             ----HhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293          173 ----RAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       173 ----~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~  206 (236)
                          -...++.+...+.+.+ +++++.|-.++..+...
T Consensus       171 ~~~~~~~l~~~l~~~l~D~~-~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  171 KSAFLKQLVKALVKLLSDAD-PEVREAARECLWALYSH  207 (228)
T ss_dssp             -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHH
Confidence                1456788888888884 88999998888888653

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=0.00043  Score=59.35  Aligned_cols=199  Identities=16%  Similarity=0.169  Sum_probs=147.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC------ch----hHHhhhcccHHH
Q 044293           27 KALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP------DL----KQSLASMETIYR   96 (236)
Q Consensus        27 ~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~------~~----~~~i~~~g~i~~   96 (236)
                      .....+.-++.- |+....+.+. ++++.|+++|.+.+.++.-..+..|..+.-.+      ++    -..+++.+.++.
T Consensus       103 d~IQ~mhvlAt~-PdLYp~lvel-n~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL  180 (536)
T KOG2734|consen  103 DIIQEMHVLATM-PDLYPILVEL-NAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL  180 (536)
T ss_pred             HHHHHHHhhhcC-hHHHHHHHHh-ccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence            345556666664 8888899999 99999999999999888777777777764421      21    234667899999


Q ss_pred             HHHHHhccCCH------HHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCC-C-cHHHHHHHHHHHHHhcC-CC
Q 044293           97 LNWIIQSSSSQ------ETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAP-S-NPAGHHLLSSLAELVQF-HG  166 (236)
Q Consensus        97 L~~lL~~~~~~------~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~-~-~~~~~~a~~aL~~L~~~-~~  166 (236)
                      |++-+..- |.      +...++.+.+-|+...+ +....+.+.|.+.+|++-+... . +.-..+|...|+-+-.+ .+
T Consensus       181 LvqnveRL-dEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e  259 (536)
T KOG2734|consen  181 LVQNVERL-DESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDE  259 (536)
T ss_pred             HHHHHHHh-hhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCch
Confidence            99988754 22      34456777788887654 6788888899999999865543 2 23456777777777764 56


Q ss_pred             ChHHHHHhCcHHHHHHHhcC--------CChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhC
Q 044293          167 NSTLAVRAGAVSELIHLIGS--------TEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKG  229 (236)
Q Consensus       167 ~~~~~~~~g~i~~lv~ll~~--------~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~  229 (236)
                      ++......+++..+++-+.-        .+..+..++-..+||.+...+++|+.++...| +....-+++.
T Consensus       260 ~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EG-lqLm~Lmlr~  329 (536)
T KOG2734|consen  260 NRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEG-LQLMNLMLRE  329 (536)
T ss_pred             hhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhcccc-HHHHHHHHHH
Confidence            88888889999999887752        13467788999999999999999999999998 5555445543

>PTZ00429 beta-adaptin; Provisional

Probab=98.16  E-value=0.00054  Score=63.84  Aligned_cols=124  Identities=16%  Similarity=0.176  Sum_probs=79.6

Q ss_pred             HHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc
Q 044293           53 ISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV  132 (236)
Q Consensus        53 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~  132 (236)
                      +..|.+=+.++++.+|-.|++.++.+-.     ..+.+ -.++++.+.+.+. ++-+|+.|+.++.++-..+  ...+.+
T Consensus       107 INtl~KDl~d~Np~IRaLALRtLs~Ir~-----~~i~e-~l~~~lkk~L~D~-~pYVRKtAalai~Kly~~~--pelv~~  177 (746)
T PTZ00429        107 VNTFLQDTTNSSPVVRALAVRTMMCIRV-----SSVLE-YTLEPLRRAVADP-DPYVRKTAAMGLGKLFHDD--MQLFYQ  177 (746)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHcCCc-----HHHHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhC--cccccc
Confidence            3444444555566666655555554332     11211 2455566667666 8999999999999986543  234456


Q ss_pred             cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcC
Q 044293          133 AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS  186 (236)
Q Consensus       133 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~  186 (236)
                      .|.++.|.++|.+.++.++.+|+.+|..++......- -...+.+..++..+.+
T Consensus       178 ~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e  230 (746)
T PTZ00429        178 QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPE  230 (746)
T ss_pred             cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhc
Confidence            7899999999999999999999999999986543221 1223444555555544

>PTZ00429 beta-adaptin; Provisional

Probab=98.15  E-value=0.00025  Score=66.00  Aligned_cols=179  Identities=13%  Similarity=0.094  Sum_probs=130.5

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      ++.+..+-..|++.+...+..+++.+-.+...+.+..       .+.+..+.++.+.+.+.++...-.+.+.+.......
T Consensus        31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS-------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela  103 (746)
T PTZ00429         31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS-------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA  103 (746)
T ss_pred             cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch-------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH
Confidence            4567788888888887777888876544443333322       345666678888999999888888888876443322


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG  166 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~  166 (236)
                      .+    .+..|.+=+++. ++.+|..|.++|..+-...-     . .-.++++.+.+.+.++-+++.|+.++..+-....
T Consensus       104 lL----aINtl~KDl~d~-Np~IRaLALRtLs~Ir~~~i-----~-e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p  172 (746)
T PTZ00429        104 LL----AVNTFLQDTTNS-SPVVRALAVRTMMCIRVSSV-----L-EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM  172 (746)
T ss_pred             HH----HHHHHHHHcCCC-CHHHHHHHHHHHHcCCcHHH-----H-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc
Confidence            22    456677777777 89999999999888655331     1 2346777788888999999999999999865333


Q ss_pred             ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293          167 NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       167 ~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~  206 (236)
                        ..+.+.|.++.+.++|.+.+ +.+.-+|+.+|..+...
T Consensus       173 --elv~~~~~~~~L~~LL~D~d-p~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        173 --QLFYQQDFKKDLVELLNDNN-PVVASNAAAIVCEVNDY  209 (746)
T ss_pred             --ccccccchHHHHHHHhcCCC-ccHHHHHHHHHHHHHHh
Confidence              23445788899999998874 78999999999999754

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.98  E-value=2.2e-05  Score=44.86  Aligned_cols=40  Identities=23%  Similarity=0.244  Sum_probs=36.3

Q ss_pred             hHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC
Q 044293           40 PQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL   80 (236)
Q Consensus        40 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~   80 (236)
                      ++++..+.+. |+++.|+.++++++++++..++++|.|++.
T Consensus         2 ~~~~~~i~~~-g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDA-GGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            3478889998 999999999999999999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.96  E-value=0.00066  Score=64.24  Aligned_cols=222  Identities=15%  Similarity=0.119  Sum_probs=140.9

Q ss_pred             hHHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCChHHHHHHHhc-cCcHHHHHhhccCC--C-----------h---HHH
Q 044293            8 ETINNCVSRSQ--SDSYEDQQKALQTLASITRVSPQYRSLLAQT-DGAISTLLGLSKSS--S-----------P---IIR   68 (236)
Q Consensus         8 ~~i~~lv~~L~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-~g~i~~Lv~lL~~~--~-----------~---~~~   68 (236)
                      +.|+..++..+  .-+.++|..|++.|..++...+...+.-... +-.++.+..+....  |           .   ..-
T Consensus       247 ~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~  326 (1075)
T KOG2171|consen  247 QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPY  326 (1075)
T ss_pred             HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcH
Confidence            33444444443  3467889999999999988744332211111 13455555554321  1           0   123


Q ss_pred             HHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCC
Q 044293           69 TLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPS  147 (236)
Q Consensus        69 ~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~  147 (236)
                      ..|..+|-.+|.+=.++..+  .-..+.+-.++++. +..-|..+..+|.-++.... +..... ...++..+..|++++
T Consensus       327 ~~A~~~lDrlA~~L~g~~v~--p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~-~~m~~~l~~Il~~Vl~~l~Dph  402 (1075)
T KOG2171|consen  327 RAAEQALDRLALHLGGKQVL--PPLFEALEAMLQST-EWKERHAALLALSVIAEGCS-DVMIGNLPKILPIVLNGLNDPH  402 (1075)
T ss_pred             HHHHHHHHHHHhcCChhheh--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhhcCCCC
Confidence            44566666666654443322  34566777788877 77888888888887776432 222223 577888888899999


Q ss_pred             cHHHHHHHHHHHHHhcC-CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC-h-hhHHHHHhcCCcHHHHH
Q 044293          148 NPAGHHLLSSLAELVQF-HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF-D-EGMIALTKTDQIVSLMV  224 (236)
Q Consensus       148 ~~~~~~a~~aL~~L~~~-~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~-~-~~~~~i~~~g~~i~~lv  224 (236)
                      ++++..|+.+++.++.+ ...-+.-...-++|.|+..+.+..++.++.+|+.+|.|.+.. + +.-.....  ++..+++
T Consensus       403 prVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd--~lm~~~l  480 (1075)
T KOG2171|consen  403 PRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD--GLMEKKL  480 (1075)
T ss_pred             HHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH--HHHHHHH
Confidence            99999999999999985 344555556778889999998876678999999999988753 2 33333433  3556344


Q ss_pred             H-HhhCCccccc
Q 044293          225 D-VLKGRSMFSK  235 (236)
Q Consensus       225 ~-~l~~~~~~~k  235 (236)
                      . +++++++.-|
T Consensus       481 ~~L~~~~~~~v~  492 (1075)
T KOG2171|consen  481 LLLLQSSKPYVQ  492 (1075)
T ss_pred             HHHhcCCchhHH
Confidence            4 4456665544

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.96  E-value=2.1e-05  Score=44.96  Aligned_cols=40  Identities=23%  Similarity=0.247  Sum_probs=36.0

Q ss_pred             CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 044293           82 PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM  122 (236)
Q Consensus        82 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~  122 (236)
                      ++++..+.+.|++++|+.+++++ +++++..++++|.|++.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence            45788888999999999999987 89999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=9e-05  Score=64.90  Aligned_cols=198  Identities=13%  Similarity=0.098  Sum_probs=139.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch-hHHhhhcccHHHHHHHHhccC
Q 044293           27 KALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL-KQSLASMETIYRLNWIIQSSS  105 (236)
Q Consensus        27 ~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~i~~L~~lL~~~~  105 (236)
                      .++..|..+++.-.-.|.-+... .+++.|+++|+.++..+..-+...++|+...=.| +..+.+.|.|..|+.++.+. 
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~-~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK-  485 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDY-PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK-  485 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhcccc-chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-
Confidence            34455666766544567777887 9999999999998777777788888887665444 78888999999999999987 


Q ss_pred             CHHHHHHHHHHHHHhcccchh--hhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-CCC---ChHHHHHhC----
Q 044293          106 SQETVKLASSLICSLAMLDKN--KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ-FHG---NSTLAVRAG----  175 (236)
Q Consensus       106 ~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~---~~~~~~~~g----  175 (236)
                      |...+.+..|.|.++.....+  +-++...-++..++.+..++.-.++..++..|+|++- +..   .+.-+.+..    
T Consensus       486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y  565 (743)
T COG5369         486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY  565 (743)
T ss_pred             hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence            788999999999999887644  3344456678999999999988899999999999875 222   222222222    


Q ss_pred             cHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHH-HHhcCCcHHHHHHHh
Q 044293          176 AVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIA-LTKTDQIVSLMVDVL  227 (236)
Q Consensus       176 ~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~-i~~~g~~i~~lv~~l  227 (236)
                      ....+++-+....+-++ +..+.+|.+++..+++... +.+...++..+-++|
T Consensus       566 lfk~l~~k~e~~np~~i-~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil  617 (743)
T COG5369         566 LFKRLIDKYEENNPMEI-LEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL  617 (743)
T ss_pred             HHHHHHHHHHhcCchhh-hhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence            23456666655533344 4557777777765554444 444333444444444

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.74  E-value=0.0013  Score=49.20  Aligned_cols=128  Identities=14%  Similarity=0.102  Sum_probs=99.9

Q ss_pred             HHhhhcccHHHHHHHHhccCC-----HHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC--CcHHHHHHHHHH
Q 044293           86 QSLASMETIYRLNWIIQSSSS-----QETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP--SNPAGHHLLSSL  158 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~~-----~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL  158 (236)
                      ..+++.||+..|++++.++..     .++..++..+...|..............+|..++.++...  +..+.+.|+..|
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL   84 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL   84 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence            457789999999999998842     3777888999999988876666777789999999999865  467888999999


Q ss_pred             HHHhcCCCChHHHH-HhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC--ChhhHHHHH
Q 044293          159 AELVQFHGNSTLAV-RAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR--FDEGMIALT  214 (236)
Q Consensus       159 ~~L~~~~~~~~~~~-~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~  214 (236)
                      -++..+....-..+ +.=-++.|+..|+.++ ++++.+++..+..|..  +++.|.++.
T Consensus        85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~-~~iq~naiaLinAL~~kA~~~~r~~i~  142 (160)
T PF11841_consen   85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSN-QEIQTNAIALINALFLKADDSKRKEIA  142 (160)
T ss_pred             HHHHhCCHHHHHHHhccCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            99988766644444 4455899999999874 8899999999987763  344555554

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.73  E-value=0.00023  Score=62.37  Aligned_cols=173  Identities=9%  Similarity=-0.013  Sum_probs=128.2

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch--h
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL--K   85 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~--~   85 (236)
                      +..+-|++.|+.++..+..-++..+.++...-...+..|.+. |+|..|++++.+.|..+|.++.|++.++-.+.++  +
T Consensus       431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~-~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek  509 (743)
T COG5369         431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEK-SIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK  509 (743)
T ss_pred             chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHh-hHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence            356677888877665555556777777776544567888887 9999999999999999999999999998877654  5


Q ss_pred             HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-h---hhhhhcc----cCcHHHHHHhhcCCCcHHHHHHHHH
Q 044293           86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-K---NKARFGV----AGTVQVLVKAVSAPSNPAGHHLLSS  157 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~---~~~~i~~----~g~i~~Lv~lL~~~~~~~~~~a~~a  157 (236)
                      -.....-++..++.+.+.. +-.+++.+.-.|.|++-+. .   .+.-+.+    .-....|++.+...+|-.....+-.
T Consensus       510 f~~Lakig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yi  588 (743)
T COG5369         510 FKFLAKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYI  588 (743)
T ss_pred             hhhHHhcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHH
Confidence            5666777899999999877 7889999999999997643 2   2332222    2356677777888888777777888


Q ss_pred             HHHHhcCCCChHHHHH--hCcHHHHHH
Q 044293          158 LAELVQFHGNSTLAVR--AGAVSELIH  182 (236)
Q Consensus       158 L~~L~~~~~~~~~~~~--~g~i~~lv~  182 (236)
                      |.+++..+++.++++.  ...+..+-.
T Consensus       589 lv~~aa~d~~l~~~V~~q~~~L~~i~e  615 (743)
T COG5369         589 LVRNAACDDTLDYIVQSQEDMLDSIFE  615 (743)
T ss_pred             HHHHHhccchHHHHHHhHHHHHHHHHH
Confidence            8888888887776553  344444333

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.70  E-value=0.012  Score=47.16  Aligned_cols=149  Identities=11%  Similarity=0.051  Sum_probs=107.4

Q ss_pred             HHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhcc---C-CHHHHHHHHHHHHHhcccch--hhhhhcccCcHHHHHH
Q 044293           68 RTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSS---S-SQETVKLASSLICSLAMLDK--NKARFGVAGTVQVLVK  141 (236)
Q Consensus        68 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~---~-~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~  141 (236)
                      .=+|+..+-.++.||+.|..+.+...---|--+|..+   + .+-.+..+.++|..|...++  .-..+...++||..++
T Consensus        96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr  175 (293)
T KOG3036|consen   96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR  175 (293)
T ss_pred             HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence            3467777778999999999998765443444444432   1 35578889999999988764  3344456899999999


Q ss_pred             hhcCCCcHHHHHHHHHHHHHhcCCCChHHHHH-h---C----cHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHH
Q 044293          142 AVSAPSNPAGHHLLSSLAELVQFHGNSTLAVR-A---G----AVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIAL  213 (236)
Q Consensus       142 lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~-~---g----~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i  213 (236)
                      .+..++...+..|.-.+..+-.++.+-.++++ .   -    .+..++.-+.+.....+.++++++...|+.++..|..+
T Consensus       176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL  255 (293)
T KOG3036|consen  176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAAL  255 (293)
T ss_pred             HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            99999988888888777777777776555543 1   2    23334444433334778899999999999999999887


Q ss_pred             Hhc
Q 044293          214 TKT  216 (236)
Q Consensus       214 ~~~  216 (236)
                      ..+
T Consensus       256 ~~c  258 (293)
T KOG3036|consen  256 RSC  258 (293)
T ss_pred             Hhh
Confidence            654

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.62  E-value=0.0011  Score=53.02  Aligned_cols=147  Identities=14%  Similarity=0.042  Sum_probs=90.6

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhc
Q 044293           12 NCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASM   91 (236)
Q Consensus        12 ~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~   91 (236)
                      .+...+.+....+...|+.++..++..-...-..+.+  ..+|.|+..+.++...+++.|..+|..+..+-.....+   
T Consensus        57 ~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~--~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~---  131 (228)
T PF12348_consen   57 AIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD--ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI---  131 (228)
T ss_dssp             HHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH---
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH---
Confidence            3444444445557777888888887652222233343  58999999999988889999999998887754421111   


Q ss_pred             ccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch-hhhhhcc----cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC
Q 044293           92 ETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK-NKARFGV----AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH  165 (236)
Q Consensus        92 g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~----~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~  165 (236)
                       .++.+....++. ++.++..++..|..+...-. ....+..    ...++.+.+.+.++++.+++.|-.++..+...-
T Consensus       132 -~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~  208 (228)
T PF12348_consen  132 -LLEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF  208 (228)
T ss_dssp             -HHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence             144555556666 89999999998887755432 2333333    347788888889999999999999998886543

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.60  E-value=0.0012  Score=58.36  Aligned_cols=160  Identities=21%  Similarity=0.180  Sum_probs=115.2

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChH-HHHHHH---HHHHhhCC
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPI-IRTLSL---SILLNLSL   80 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~-~~~~a~---~~L~~l~~   80 (236)
                      +..+.|+.++..+.++++..|..|+.-|..+..-.+. .-...- .|++..++..+.+..+. +.+-+.   ..+..+..
T Consensus       247 d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~-~~l~~~-s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s  324 (675)
T KOG0212|consen  247 DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR-DLLLYL-SGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS  324 (675)
T ss_pred             CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc-chhhhh-hhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh
Confidence            4567889999999999999999998888888765322 222223 37788888888766553 332222   12333333


Q ss_pred             CCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293           81 NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE  160 (236)
Q Consensus        81 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~  160 (236)
                      .+..+..+--...+..+.+.+.++ ..+++..+..-+..|-...-++-........+.|++-|.+.++.+...++..+.+
T Consensus       325 ~~~~~~~id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~  403 (675)
T KOG0212|consen  325 SERLKEEIDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS  403 (675)
T ss_pred             hhhhccccchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence            333343444455788888899888 7999999988777776655555555568899999999999999999999999999


Q ss_pred             HhcCCCC
Q 044293          161 LVQFHGN  167 (236)
Q Consensus       161 L~~~~~~  167 (236)
                      +|.+++.
T Consensus       404 i~~s~~~  410 (675)
T KOG0212|consen  404 ICSSSNS  410 (675)
T ss_pred             HhcCccc
Confidence            9997655

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.56  E-value=0.0016  Score=52.55  Aligned_cols=195  Identities=13%  Similarity=0.082  Sum_probs=126.6

Q ss_pred             CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHh-------hccCCC--h---HHHHHHHHHHHhhCCCCchhHHh
Q 044293           21 SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLG-------LSKSSS--P---IIRTLSLSILLNLSLNPDLKQSL   88 (236)
Q Consensus        21 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-------lL~~~~--~---~~~~~a~~~L~~l~~~~~~~~~i   88 (236)
                      +++.|+.|+..|..--...++....+-...|.+..|++       .++++.  +   .-.-+|+..+-.+|.||+.|..+
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            56778888777766555445555556666577766654       233321  2   22335666666789999999999


Q ss_pred             hhcccHHHHHHHHhccC----CHHHHHHHHHHHHHhcccch--hhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293           89 ASMETIYRLNWIIQSSS----SQETVKLASSLICSLAMLDK--NKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV  162 (236)
Q Consensus        89 ~~~g~i~~L~~lL~~~~----~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~  162 (236)
                      .+....--|.-+|+...    -+..|....+++..|...++  .-.-+.+.+.+|..++.+..++.-.+..|.-.+..+-
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL  167 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL  167 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            98876555555555431    24577789999999988553  3344457899999999999998776666666666655


Q ss_pred             cCCCChHHHH-------H-hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHh
Q 044293          163 QFHGNSTLAV-------R-AGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTK  215 (236)
Q Consensus       163 ~~~~~~~~~~-------~-~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~  215 (236)
                      .++.+-+.++       . ..++..++.-+....++.+.++.+++-.-|+.++..|+.+.+
T Consensus       168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~  228 (262)
T PF04078_consen  168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ  228 (262)
T ss_dssp             HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred             cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence            5544333322       2 345555666554433578999999999999999999998875

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.0012  Score=59.46  Aligned_cols=173  Identities=10%  Similarity=0.066  Sum_probs=124.6

Q ss_pred             cCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH--hhh---cccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc
Q 044293           50 DGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS--LAS---METIYRLNWIIQSSSSQETVKLASSLICSLAMLD  124 (236)
Q Consensus        50 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~--i~~---~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~  124 (236)
                      +.++|.|..+|.+++...++-|..+|..++.+....-.  ...   .-.||.++++.++. ++.+|.+|..++--.-...
T Consensus       127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~  205 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQ  205 (885)
T ss_pred             hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC-ChhHHHHHHhhhhheeecC
Confidence            35678889999998888899999999999887654221  111   34899999999999 8999999999877554433


Q ss_pred             hhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293          125 KNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLL  203 (236)
Q Consensus       125 ~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l  203 (236)
                      . ...+.. -.+++.|..+-.+.++.++++.|.+|..|......|-.=--.+++..+++.-++.+ +++.-.|+.-...+
T Consensus       206 ~-qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~d-E~VALEACEFwla~  283 (885)
T KOG2023|consen  206 T-QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVD-ENVALEACEFWLAL  283 (885)
T ss_pred             c-HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcc-hhHHHHHHHHHHHH
Confidence            2 223322 46777888888888999999999999998875544433223567777888777775 66878889999999


Q ss_pred             cCChhhHHHHHhcC-CcHHHHHH
Q 044293          204 ARFDEGMIALTKTD-QIVSLMVD  225 (236)
Q Consensus       204 ~~~~~~~~~i~~~g-~~i~~lv~  225 (236)
                      |..+..+..+...= .+||.|++
T Consensus       284 aeqpi~~~~L~p~l~kliPvLl~  306 (885)
T KOG2023|consen  284 AEQPICKEVLQPYLDKLIPVLLS  306 (885)
T ss_pred             hcCcCcHHHHHHHHHHHHHHHHc
Confidence            99886665554321 13444444

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=97.53  E-value=0.00094  Score=51.99  Aligned_cols=126  Identities=11%  Similarity=0.060  Sum_probs=95.5

Q ss_pred             CCChHHHHHHHHHHHhhCCCCchhHHhhh----------------cccHHHHHHHHhcc-----CCHHHHHHHHHHHHHh
Q 044293           62 SSSPIIRTLSLSILLNLSLNPDLKQSLAS----------------METIYRLNWIIQSS-----SSQETVKLASSLICSL  120 (236)
Q Consensus        62 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~~----------------~g~i~~L~~lL~~~-----~~~~~~~~a~~~L~~L  120 (236)
                      .+.......++.+|.|++..+.....+.+                ...+..|++.+-.|     +..+-..+.+.++.|+
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            33445567788899999998888664432                23677888877662     1345667899999999


Q ss_pred             cccchhhhhhcc--cCc--HHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHH---hCcHHHHHHHhcCC
Q 044293          121 AMLDKNKARFGV--AGT--VQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVR---AGAVSELIHLIGST  187 (236)
Q Consensus       121 s~~~~~~~~i~~--~g~--i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~---~g~i~~lv~ll~~~  187 (236)
                      +..++.|..+.+  .+.  +..|+....+.|..-+..++.+|.|+|...+....+..   .+.+|.++--|..+
T Consensus        86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGp  159 (192)
T PF04063_consen   86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGP  159 (192)
T ss_pred             cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCC
Confidence            999999999986  455  77888888888777778999999999998888877765   46778777777643

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.52  E-value=0.00034  Score=42.79  Aligned_cols=55  Identities=16%  Similarity=0.005  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 044293           65 PIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSL  120 (236)
Q Consensus        65 ~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~L  120 (236)
                      +.+|..|+.+|.+++........-.....++.|+.+|+++ +++++..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            4678999999999887776654445678999999999888 789999999999865

...

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.50  E-value=0.0023  Score=51.64  Aligned_cols=148  Identities=18%  Similarity=0.129  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCC-----hHHHHHHHHHHHhhCCCCch--hHHhhhcccHH
Q 044293           23 EDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSS-----PIIRTLSLSILLNLSLNPDL--KQSLASMETIY   95 (236)
Q Consensus        23 ~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~l~~~~~~--~~~i~~~g~i~   95 (236)
                      ...+.|+..++.++.+ ++.|..|.++ .+.-.|-.+|+..+     +.+|-.++++++.+.+.++.  -..+.+.+.+|
T Consensus        65 nRVcnaLaLlQ~vAsh-petr~~Fl~a-~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiip  142 (262)
T PF04078_consen   65 NRVCNALALLQCVASH-PETRMPFLKA-HIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIP  142 (262)
T ss_dssp             HHHHHHHHHHHHHHH--TTTHHHHHHT-TGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHH
T ss_pred             HHHHHHHHHHHHHHcC-hHHHHHHHHc-CchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHH
Confidence            3456788889999986 7899999998 88878888887543     34577888999999886543  55566889999


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhc-------c-cCcHHHHHH-hhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293           96 RLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG-------V-AGTVQVLVK-AVSAPSNPAGHHLLSSLAELVQFHG  166 (236)
Q Consensus        96 ~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-------~-~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~~~~  166 (236)
                      .-++.++.| +.-.+.-|+-++..+-.++....-+.       . ..++..++. +..+++++..++.+++-..||.++.
T Consensus       143 lcLr~me~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr  221 (262)
T PF04078_consen  143 LCLRIMEFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR  221 (262)
T ss_dssp             HHHHHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence            999999999 77788888888877776665444433       1 333444443 3356788999999999999999999


Q ss_pred             ChHHHHH
Q 044293          167 NSTLAVR  173 (236)
Q Consensus       167 ~~~~~~~  173 (236)
                      .|..+.+
T Consensus       222 ar~aL~~  228 (262)
T PF04078_consen  222 AREALRQ  228 (262)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.49  E-value=0.0015  Score=57.61  Aligned_cols=175  Identities=19%  Similarity=0.190  Sum_probs=120.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHhccCcHHHHHhhc----------cCCChHHHHHHHHHHHhhCCCCc-hhHHhhhcccHHH
Q 044293           28 ALQTLASITRVSPQYRSLLAQTDGAISTLLGLS----------KSSSPIIRTLSLSILLNLSLNPD-LKQSLASMETIYR   96 (236)
Q Consensus        28 a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL----------~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~g~i~~   96 (236)
                      |+.+|+.++++ +.+...+... .++..|..+-          ...++++...|+.+|+|+-.+.. .|..+.+.|+.+.
T Consensus         1 ~L~~LRiLsRd-~~~~~~l~~~-~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~   78 (446)
T PF10165_consen    1 CLETLRILSRD-PTGLDPLFTE-EGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEK   78 (446)
T ss_pred             CHHHHHHHccC-cccchhhccH-HHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHH
Confidence            46678888887 5566666665 6788888775          23467889999999999877654 5888889999999


Q ss_pred             HHHHHhccC----CHHHHHHHHHHHHHhccc-chhhhhhcc-cCcHHHHHHhhcC--------C---------CcHHHHH
Q 044293           97 LNWIIQSSS----SQETVKLASSLICSLAML-DKNKARFGV-AGTVQVLVKAVSA--------P---------SNPAGHH  153 (236)
Q Consensus        97 L~~lL~~~~----~~~~~~~a~~~L~~Ls~~-~~~~~~i~~-~g~i~~Lv~lL~~--------~---------~~~~~~~  153 (236)
                      ++..|+...    +.+..-...+.|+-++.. .+.+..+.+ .+++..++..|..        .         +......
T Consensus        79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E  158 (446)
T PF10165_consen   79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE  158 (446)
T ss_pred             HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence            999999752    567778899999887754 455655554 6888888876632        0         1234578


Q ss_pred             HHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCC--------ChhhHHHHHHHHHHHHc
Q 044293          154 LLSSLAELVQFHGNSTLAVRAGAVSELIHLIGST--------EAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       154 a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~--------~~~~~~~~a~~~L~~l~  204 (236)
                      +++.++|+..+......-.....++.++.++..-        .......+++.+|.|+-
T Consensus       159 iLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlp  217 (446)
T PF10165_consen  159 ILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLP  217 (446)
T ss_pred             HHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCC
Confidence            8899999987544332212244555555544311        12345678888888873

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.49  E-value=0.00049  Score=42.09  Aligned_cols=55  Identities=16%  Similarity=0.150  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhh
Q 044293           22 YEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNL   78 (236)
Q Consensus        22 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l   78 (236)
                      +.+|..|+++|..++...++.-+.+..  .+++.|+.+|+++++++|..|+.+|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~--~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLP--ELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHH--HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468899999999988776665555553  6899999999999999999999999875

...

>TIGR02270 conserved hypothetical protein

Probab=97.48  E-value=0.011  Score=51.68  Aligned_cols=24  Identities=8%  Similarity=0.027  Sum_probs=13.2

Q ss_pred             HHHHHhhccCCChHHHHHHHHHHH
Q 044293           53 ISTLLGLSKSSSPIIRTLSLSILL   76 (236)
Q Consensus        53 i~~Lv~lL~~~~~~~~~~a~~~L~   76 (236)
                      +..|+..|...++.++..++.+|.
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg  111 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALG  111 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHh
Confidence            555555555555555555555554

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.47  E-value=0.0076  Score=55.80  Aligned_cols=146  Identities=18%  Similarity=0.190  Sum_probs=109.9

Q ss_pred             hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293            4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD   83 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~   83 (236)
                      ++++..-+.+++...+.+.+.++-....|..++..+|+  +++.    .+..+..=+.++++.+|-.|++++.-+--   
T Consensus        51 ~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~~lL----avNti~kDl~d~N~~iR~~AlR~ls~l~~---  121 (757)
T COG5096          51 EDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPE--LALL----AVNTIQKDLQDPNEEIRGFALRTLSLLRV---  121 (757)
T ss_pred             CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHHH----HHHHHHhhccCCCHHHHHHHHHHHHhcCh---
Confidence            44555666777777777777777777777777776552  2222    46777777888999999888887765422   


Q ss_pred             hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293           84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus        84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~  163 (236)
                        ..+. ...++++.+++.++ ++.+|+.|+-++.++=..+  +..+.+.|.+..+..++.+.+|.+..+|+.+|..+..
T Consensus       122 --~el~-~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld--~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         122 --KELL-GNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLD--KDLYHELGLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             --HHHH-HHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcC--HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence              2222 34788999999998 8999999999999987655  5566678999999999999999999999999988765


Q ss_pred             C
Q 044293          164 F  164 (236)
Q Consensus       164 ~  164 (236)
                      .
T Consensus       196 e  196 (757)
T COG5096         196 E  196 (757)
T ss_pred             h
Confidence            4

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=0.0042  Score=58.89  Aligned_cols=140  Identities=16%  Similarity=0.193  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHhc---cCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHH
Q 044293           23 EDQQKALQTLASITRVSPQYRSLLAQT---DGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLN   98 (236)
Q Consensus        23 ~~~~~a~~~L~~l~~~~~~~~~~i~~~---~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~   98 (236)
                      +....++.+|+++...+++....|...   -|-++.++.++.. +++.++..++.++.-+..+.+.-..+++.|.+..|+
T Consensus      1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred             HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHH
Confidence            345679999999999988544433322   2667777777764 678999999999988888888888899999999999


Q ss_pred             HHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC-CcHHHHHHHHHHHHHhcC
Q 044293           99 WIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP-SNPAGHHLLSSLAELVQF  164 (236)
Q Consensus        99 ~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L~~~  164 (236)
                      .+|.+  -+..++.+..+|..|+.+.+.-..-.+.|++..+.+++... +++.+..++..+..+...
T Consensus      1820 ~lLHS--~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1820 TLLHS--QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred             HHHhc--ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence            99986  48999999999999999987766666789999898888654 566777888888888763

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.42  E-value=0.012  Score=52.08  Aligned_cols=208  Identities=18%  Similarity=0.207  Sum_probs=135.3

Q ss_pred             HhHHHHHHHHh----------cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-----ChHHHHHH
Q 044293            7 RETINNCVSRS----------QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-----SPIIRTLS   71 (236)
Q Consensus         7 ~~~i~~lv~~L----------~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-----~~~~~~~a   71 (236)
                      .+.+..|.++-          ...++++..+|+++|.|....++..|+.+.+. |+.+.++..|+..     +.+..-..
T Consensus        21 ~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~-~~~~~l~~~Lk~~~~~~~~~d~~Fl~   99 (446)
T PF10165_consen   21 EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDL-GLAEKLCERLKNYSDSSQPSDVEFLD   99 (446)
T ss_pred             HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHc-CcHHHHHHHHHcccccCCChhHHHHH
Confidence            45666666665          24578889999999999999999999999998 9999999999876     56777778


Q ss_pred             HHHHHhhCCC-CchhHHhh-hcccHHHHHHHHhcc----------------CCHHHHHHHHHHHHHhcccchhhhhhccc
Q 044293           72 LSILLNLSLN-PDLKQSLA-SMETIYRLNWIIQSS----------------SSQETVKLASSLICSLAMLDKNKARFGVA  133 (236)
Q Consensus        72 ~~~L~~l~~~-~~~~~~i~-~~g~i~~L~~lL~~~----------------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~  133 (236)
                      .++|+-++.. ++.+..++ +.+++..++..|...                .+.+....++.+++|+.........-...
T Consensus       100 ~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~  179 (446)
T PF10165_consen  100 SRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFS  179 (446)
T ss_pred             HHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhh
Confidence            8888766654 45676666 568888888877531                02344556888899997765322221235


Q ss_pred             CcHHHHHHhhcCC---------CcHHHHHHHHHHHHHhcCC-C-------ChHHH----HHhCcHHHHHHHhcCC----C
Q 044293          134 GTVQVLVKAVSAP---------SNPAGHHLLSSLAELVQFH-G-------NSTLA----VRAGAVSELIHLIGST----E  188 (236)
Q Consensus       134 g~i~~Lv~lL~~~---------~~~~~~~a~~aL~~L~~~~-~-------~~~~~----~~~g~i~~lv~ll~~~----~  188 (236)
                      +.++.|+.++..-         ......+++.+|.++-... .       +....    .....+..++++|...    .
T Consensus       180 ~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~  259 (446)
T PF10165_consen  180 PSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYE  259 (446)
T ss_pred             HHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcC
Confidence            6677777666532         1235567777777662210 0       00000    1123466677777531    1


Q ss_pred             ---hhhHHHHHHHHHHHHcCC-hhhHHHHHh
Q 044293          189 ---AEDLAGTSLAVLNLLARF-DEGMIALTK  215 (236)
Q Consensus       189 ---~~~~~~~a~~~L~~l~~~-~~~~~~i~~  215 (236)
                         ..+.....+.+|..++.. ...|+.+..
T Consensus       260 ~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~  290 (446)
T PF10165_consen  260 ALKLDELLTPLLTLLTRLARAAREVRKYLRA  290 (446)
T ss_pred             cccchhhHhhHHHHHHHHHHhcHHHHHHHHH
Confidence               124556777888888865 455555544

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.42  E-value=0.0043  Score=49.51  Aligned_cols=149  Identities=18%  Similarity=0.130  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-----ChHHHHHHHHHHHhhCCCCch--hHHhhhcccH
Q 044293           22 YEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-----SPIIRTLSLSILLNLSLNPDL--KQSLASMETI   94 (236)
Q Consensus        22 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~l~~~~~~--~~~i~~~g~i   94 (236)
                      ....+.|+..|+.++.+ ++.|..|.++ -+--.|-.+|+..     .+-.|-.+++++..+.+.++-  -..+...+.+
T Consensus        93 snRVcnaL~LlQcvASH-pdTr~~FL~A-~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV  170 (293)
T KOG3036|consen   93 SNRVCNALALLQCVASH-PDTRRAFLRA-HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV  170 (293)
T ss_pred             cchHHHHHHHHHHHhcC-cchHHHHHHc-cChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence            33556788888998887 7899999987 5444455666543     345677889999999887653  4455688999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhc-------c-cCcHHHHH-HhhcCCCcHHHHHHHHHHHHHhcCC
Q 044293           95 YRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG-------V-AGTVQVLV-KAVSAPSNPAGHHLLSSLAELVQFH  165 (236)
Q Consensus        95 ~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-------~-~g~i~~Lv-~lL~~~~~~~~~~a~~aL~~L~~~~  165 (236)
                      |..++.+..| ++..+.-|+-++-.+-.++..-.-+-       . .-.+..++ ++...++++..++++++..+||..+
T Consensus       171 PlCLrime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  171 PLCLRIMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHHHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            9999999999 78888888888888777664433322       1 22333333 3334578899999999999999999


Q ss_pred             CChHHHHH
Q 044293          166 GNSTLAVR  173 (236)
Q Consensus       166 ~~~~~~~~  173 (236)
                      ..|..+..
T Consensus       250 rar~aL~~  257 (293)
T KOG3036|consen  250 RARAALRS  257 (293)
T ss_pred             HHHHHHHh
Confidence            88877653

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.42  E-value=0.0083  Score=50.88  Aligned_cols=217  Identities=14%  Similarity=0.127  Sum_probs=150.9

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHH-----HHHHHhc-cCcHHHHHhhccCCChHHHHHHHHHHHhhCC
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQY-----RSLLAQT-DGAISTLLGLSKSSSPIIRTLSLSILLNLSL   80 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~   80 (236)
                      .+.+..|+..|..-+-+.+..++....++.....+.     ...+... +.++..|+.--.  ++++--.+-..|..+..
T Consensus        75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k  152 (335)
T PF08569_consen   75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIK  152 (335)
T ss_dssp             HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTT
T ss_pred             hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHh
Confidence            345667777777777778887877777777653322     2344444 445555544433  45555677788899999


Q ss_pred             CCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHH-hcccchhhhhhcc---cCcHHHHHHhhcCCCcHHHHHHHH
Q 044293           81 NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICS-LAMLDKNKARFGV---AGTVQVLVKAVSAPSNPAGHHLLS  156 (236)
Q Consensus        81 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~-Ls~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~  156 (236)
                      ++.-...+.....+..+.+..+.+ +-++...|..++.. |+.++..-..+..   ..++...-++|.++|.-+++.++.
T Consensus       153 ~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk  231 (335)
T PF08569_consen  153 HESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK  231 (335)
T ss_dssp             SHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred             hHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence            988777777788999999999988 89999999999996 4555544444443   466778889999999999999999


Q ss_pred             HHHHHhcCCCChHHHHH----hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhh---HHHHHhcCCcHHHHHHHhhC
Q 044293          157 SLAELVQFHGNSTLAVR----AGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEG---MIALTKTDQIVSLMVDVLKG  229 (236)
Q Consensus       157 aL~~L~~~~~~~~~~~~----~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~---~~~i~~~g~~i~~lv~~l~~  229 (236)
                      .|+.+-..+.|...|.+    ..-+..++.+|++.+ ..++-.|.-++.....+|..   -..|....  =..|++.+.+
T Consensus       232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~s-k~Iq~eAFhvFKvFVANp~K~~~I~~iL~~N--r~kLl~fl~~  308 (335)
T PF08569_consen  232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKS-KNIQFEAFHVFKVFVANPNKPPPIVDILIKN--REKLLRFLKD  308 (335)
T ss_dssp             HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHT--HHHHHHHHHT
T ss_pred             HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcc-hhhhHHHHHHHHHHHhCCCCChHHHHHHHHH--HHHHHHHHHh
Confidence            99999999999877654    345778899999874 77998999999887665532   22222222  2677777765

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.41  E-value=0.0011  Score=45.97  Aligned_cols=66  Identities=17%  Similarity=0.333  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhc--cCCChHHHHHHHHHHHhhCCCC-chhHHhhhc
Q 044293           25 QQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS--KSSSPIIRTLSLSILLNLSLNP-DLKQSLASM   91 (236)
Q Consensus        25 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~   91 (236)
                      +...++.|.++++.++.++..+.+. |+||.+++.-  +..+|-+++.|+.++.|++... +|+..|.+.
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~-~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVREL-GGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHc-CChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            4567888999999999999999998 9999999874  4567999999999999988764 677777643

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.41  E-value=0.0054  Score=57.93  Aligned_cols=194  Identities=15%  Similarity=0.131  Sum_probs=139.5

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHH--hhCCCCchh
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILL--NLSLNPDLK   85 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~--~l~~~~~~~   85 (236)
                      +.+|..++.|-  ++--|..|+..|..+..-.+=.-..-..- |++|..++||++...+++ -.+..++  -|+.++..+
T Consensus       472 eQLPiVLQVLL--SQvHRlRAL~LL~RFLDlGpWAV~LaLsV-GIFPYVLKLLQS~a~ELr-piLVFIWAKILAvD~SCQ  547 (1387)
T KOG1517|consen  472 EQLPIVLQVLL--SQVHRLRALVLLARFLDLGPWAVDLALSV-GIFPYVLKLLQSSARELR-PILVFIWAKILAVDPSCQ  547 (1387)
T ss_pred             HhcchHHHHHH--HHHHHHHHHHHHHHHhccchhhhhhhhcc-chHHHHHHHhccchHhhh-hhHHHHHHHHHhcCchhH
Confidence            34455555442  12245567777777765544222222344 999999999999888875 4455555  378888888


Q ss_pred             HHhhhcccHHHHHHHHhccC--CHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCC-CcHHHHHHHHHHHHH
Q 044293           86 QSLASMETIYRLNWIIQSSS--SQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAP-SNPAGHHLLSSLAEL  161 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~--~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~L  161 (236)
                      ..+++.+|-..+++.|..+.  +++-+.-|+-+|.-++.+- -......+.+.+..-+..|.++ .+-.+..++.+|..|
T Consensus       548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L  627 (1387)
T KOG1517|consen  548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL  627 (1387)
T ss_pred             HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            88888878888888888732  4577777888888777653 3455566788899889999886 456778888899888


Q ss_pred             hcCC-CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293          162 VQFH-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       162 ~~~~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~  206 (236)
                      =.+. +.|-.-++.++...|+.+|.++ .++++-.|+-+|.-+..+
T Consensus       628 W~d~~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALgtfl~~  672 (1387)
T KOG1517|consen  628 WEDYDEARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALGTFLSN  672 (1387)
T ss_pred             hhhcchhhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHHHHhcc
Confidence            7754 5555567789999999999987 488998888888877653

>TIGR02270 conserved hypothetical protein

Probab=97.35  E-value=0.0054  Score=53.48  Aligned_cols=90  Identities=14%  Similarity=-0.044  Sum_probs=70.0

Q ss_pred             CcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhh
Q 044293           51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARF  130 (236)
Q Consensus        51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i  130 (236)
                      +..+.|+.+|.+.++.++..++.++..           ...+..+.+...|++. ++.++..|+.+|..+-.        
T Consensus       117 ~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~-d~~Vra~A~raLG~l~~--------  176 (410)
T TIGR02270       117 QAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHE-DALVRAAALRALGELPR--------  176 (410)
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCC-CHHHHHHHHHHHHhhcc--------
Confidence            557888899999999998887777766           1223456888888877 89999999999987653        


Q ss_pred             cccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293          131 GVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV  162 (236)
Q Consensus       131 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~  162 (236)
                        ...++.|...+.+.++.++..|+.++..+.
T Consensus       177 --~~a~~~L~~al~d~~~~VR~aA~~al~~lG  206 (410)
T TIGR02270       177 --RLSESTLRLYLRDSDPEVRFAALEAGLLAG  206 (410)
T ss_pred             --ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence              355677888888889999988888886653

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.0058  Score=50.96  Aligned_cols=176  Identities=13%  Similarity=0.115  Sum_probs=128.0

Q ss_pred             cHHHHHhhccCCChHHHHHHHHHHHhhCCC-Cch----hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchh
Q 044293           52 AISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDL----KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN  126 (236)
Q Consensus        52 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~----~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~  126 (236)
                      ..|.|-.=|..++..+...++.-+..+-.+ +.|    ...+++.|.++.+++.+-.. +.++-..|...|..++..+..
T Consensus        83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge-ddeVAkAAiesikrialfpaa  161 (524)
T KOG4413|consen   83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE-DDEVAKAAIESIKRIALFPAA  161 (524)
T ss_pred             hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcHHH
Confidence            344444335566667776677655544333 322    33455889999999999877 889999999999999999988


Q ss_pred             hhhhcccCcHHHHH--HhhcCCCcHHHHHHHHHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293          127 KARFGVAGTVQVLV--KAVSAPSNPAGHHLLSSLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLL  203 (236)
Q Consensus       127 ~~~i~~~g~i~~Lv--~lL~~~~~~~~~~a~~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l  203 (236)
                      ...+.+......+-  .+-...|+-++......+..+.+ +++.....-..|.+..|..-|+...+.-+.-+|+.....|
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            88888766555443  33344555566666666666655 6666666667899999998888754456678999999999


Q ss_pred             cCChhhHHHHHhcCCcHHHHHHHhhC
Q 044293          204 ARFDEGMIALTKTDQIVSLMVDVLKG  229 (236)
Q Consensus       204 ~~~~~~~~~i~~~g~~i~~lv~~l~~  229 (236)
                      +....+|+-+.++| +|..+..++.+
T Consensus       242 aeteHgreflaQeg-lIdlicnIIsG  266 (524)
T KOG4413|consen  242 AETEHGREFLAQEG-LIDLICNIISG  266 (524)
T ss_pred             HHHhhhhhhcchhh-HHHHHHHHhhC
Confidence            99999999888887 68999988875

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.31  E-value=0.019  Score=51.35  Aligned_cols=205  Identities=11%  Similarity=0.005  Sum_probs=117.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHH--HHHhhCCCCchhH
Q 044293            9 TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLS--ILLNLSLNPDLKQ   86 (236)
Q Consensus         9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~--~L~~l~~~~~~~~   86 (236)
                      ..+.+.+.+.......+..+...+..+..+.  .-+.+.+. +.+..|.....+.....++.+..  ...++..-.    
T Consensus       135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~-~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----  207 (569)
T KOG1242|consen  135 VLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEF-GFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----  207 (569)
T ss_pred             HHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhh-hHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----
Confidence            3344444444445555555555565555542  23444554 66666666655543333222111  111111101    


Q ss_pred             HhhhcccHHHHHHHHhccC--CHHHHHHHHHHHHHh---cccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293           87 SLASMETIYRLNWIIQSSS--SQETVKLASSLICSL---AMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL  161 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~--~~~~~~~a~~~L~~L---s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L  161 (236)
                      ...+...++.+-.+|.+..  ...++..|..+...+   ......+      -.+|.++.-+....=+.+..++..|..+
T Consensus       208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK------~llpsll~~l~~~kWrtK~aslellg~m  281 (569)
T KOG1242|consen  208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK------LLLPSLLGSLLEAKWRTKMASLELLGAM  281 (569)
T ss_pred             CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh------HhhhhhHHHHHHHhhhhHHHHHHHHHHH
Confidence            2224555666666665431  456666554444433   2222222      2344444444333335667888888888


Q ss_pred             hcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293          162 VQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRS  231 (236)
Q Consensus       162 ~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~~~  231 (236)
                      ..+-...-...-..++|.+.+.|-++ ++++++.+..+|..++.--++-+ |-.   ++|.|++.+.+.+
T Consensus       282 ~~~ap~qLs~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~d-I~~---~ip~Lld~l~dp~  346 (569)
T KOG1242|consen  282 ADCAPKQLSLCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPD-IQK---IIPTLLDALADPS  346 (569)
T ss_pred             HHhchHHHHHHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHH-HHH---HHHHHHHHhcCcc
Confidence            88777777778899999999999998 58999999999999887665555 221   4688888887655

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=97.30  E-value=0.0015  Score=42.43  Aligned_cols=69  Identities=16%  Similarity=0.188  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCC
Q 044293          150 AGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQ  218 (236)
Q Consensus       150 ~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~  218 (236)
                      ..+.|++++.++++++.+...+-+.++++.++++....+...++--|..+|.-++.+.++.+.+-+.|.
T Consensus         3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW   71 (73)
T PF14668_consen    3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW   71 (73)
T ss_pred             HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence            357899999999999999999888999999999998876678889999999999999999999988764

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.30  E-value=0.0084  Score=44.97  Aligned_cols=120  Identities=10%  Similarity=0.125  Sum_probs=95.5

Q ss_pred             HHHHHhccCcHHHHHhhccCCC------hHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccC-CHHHHHHHHH
Q 044293           43 RSLLAQTDGAISTLLGLSKSSS------PIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS-SQETVKLASS  115 (236)
Q Consensus        43 ~~~i~~~~g~i~~Lv~lL~~~~------~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~~a~~  115 (236)
                      ...|... ||++.|++++.++.      .+....++.+...|-.|.-.-....+..+|..++..+.... +..+.+.|..
T Consensus         4 A~EFI~~-~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISR-DGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhc-cCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            4556776 99999999998765      36677788888888888765566778889999999998653 6788899999


Q ss_pred             HHHHhcccchh-hhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293          116 LICSLAMLDKN-KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus       116 ~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~  163 (236)
                      .|-++..++.. -..+.+.=.++.|+.+|+..+++.+.+|+..+-.|-.
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~  131 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL  131 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            99999887765 3444456778999999999888888888877766654

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.18  E-value=0.096  Score=44.06  Aligned_cols=197  Identities=15%  Similarity=0.148  Sum_probs=110.9

Q ss_pred             hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhc-cCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-
Q 044293            4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQT-DGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-   81 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-   81 (236)
                      +++++.+...++.+...+...|..++..+......... ...+.+. ...+..+...++.+..+-+..|+.++.-++.. 
T Consensus        39 ~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl  117 (309)
T PF05004_consen   39 EDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL  117 (309)
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc
Confidence            44555677778888777788999999999887755321 1222111 13466666677777666667777777766554 


Q ss_pred             --CchhHHhhhcccHHHHHHHHhccC-CHHHHHHHHHHHHHhcccchh-hhhhcc-cCcHHH--HHHhhcC---------
Q 044293           82 --PDLKQSLASMETIYRLNWIIQSSS-SQETVKLASSLICSLAMLDKN-KARFGV-AGTVQV--LVKAVSA---------  145 (236)
Q Consensus        82 --~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~Ls~~~~~-~~~i~~-~g~i~~--Lv~lL~~---------  145 (236)
                        ......+.+ ...|.|...+..+. .+..+..++.+|.-++..... -..+.. -..+..  .......         
T Consensus       118 g~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~  196 (309)
T PF05004_consen  118 GAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAA  196 (309)
T ss_pred             CCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccC
Confidence              233445543 47788888888663 355666665555544332110 111110 122331  1222222         


Q ss_pred             -CCcHHHHHHHHHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293          146 -PSNPAGHHLLSSLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLL  203 (236)
Q Consensus       146 -~~~~~~~~a~~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l  203 (236)
                       +++.+...|+.+-.-|.. .+.....-.-...+|.|+.+|.+++ .+++..|-.+|.-|
T Consensus       197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d-~~VRiAAGEaiAll  255 (309)
T PF05004_consen  197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDD-VDVRIAAGEAIALL  255 (309)
T ss_pred             CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence             123566666666555544 3332222223567999999999874 67776555554443

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.14  E-value=0.04  Score=46.67  Aligned_cols=164  Identities=14%  Similarity=0.167  Sum_probs=96.0

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS   87 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~   87 (236)
                      +.++.+++.+.+.+..++..+...+..+.           .. -.++.+..++...++.++..++.+|..+-        
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~-~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------  102 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELG-----------SE-EAVPLLRELLSDEDPRVRDAAADALGELG--------  102 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hH-HHHHHHHHHhcCCCHHHHHHHHHHHHccC--------
Confidence            56777888887777777777766633331           11 45777778888777777777777554432        


Q ss_pred             hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc--------------------------hhh-------hhhcccC
Q 044293           88 LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD--------------------------KNK-------ARFGVAG  134 (236)
Q Consensus        88 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~--------------------------~~~-------~~i~~~g  134 (236)
                        ....++.++..++.+.+..++..|+.+|..+-...                          ..+       ..++...
T Consensus       103 --~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~  180 (335)
T COG1413         103 --DPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPE  180 (335)
T ss_pred             --ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChh
Confidence              23355556665553215556666655555433211                          011       1133466


Q ss_pred             cHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHH
Q 044293          135 TVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNL  202 (236)
Q Consensus       135 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~  202 (236)
                      .++.+...+...+..++..+..+|..+....        ....+.+...+.+.+ ..++..++..|..
T Consensus       181 ~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~-~~vr~~~~~~l~~  239 (335)
T COG1413         181 AIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDES-LEVRKAALLALGE  239 (335)
T ss_pred             hhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCC-HHHHHHHHHHhcc
Confidence            7788888888877778888888887776654        233344555555442 3444444444433

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.13  E-value=0.0032  Score=43.66  Aligned_cols=67  Identities=10%  Similarity=0.088  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCC-ChhhHHHHHHHHHHHHcC-ChhhHHHHHhcC
Q 044293          151 GHHLLSSLAELVQ-FHGNSTLAVRAGAVSELIHLIGST-EAEDLAGTSLAVLNLLAR-FDEGMIALTKTD  217 (236)
Q Consensus       151 ~~~a~~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~-~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g  217 (236)
                      +...++.|+|||. ++.++..+.+.|++|.+++.-.-. .+|-+++.|+.++.||+. ++++++.+.+..
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~   72 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE   72 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence            4567889999997 578899999999999999987543 367899999999999995 678988887654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=97.09  E-value=0.01  Score=48.18  Aligned_cols=98  Identities=19%  Similarity=0.274  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHh-hCCCCchhHHhhhcccHHHHHHHH
Q 044293           24 DQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLN-LSLNPDLKQSLASMETIYRLNWII  101 (236)
Q Consensus        24 ~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~-l~~~~~~~~~i~~~g~i~~L~~lL  101 (236)
                      ....|+..|+.++--++..|..|.+. .++..|+++|+. ..+.++..++.+|.. |..++.|...+-+.+|+..++.++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~-~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHRE-QNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhh-hhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            45668899999998889999999998 999999999954 567888888877775 566678988999999999999999


Q ss_pred             hccC-CHHHHHHHHHHHHHhcc
Q 044293          102 QSSS-SQETVKLASSLICSLAM  122 (236)
Q Consensus       102 ~~~~-~~~~~~~a~~~L~~Ls~  122 (236)
                      ++.. +.+++-.+...|+....
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHc
Confidence            9753 67888888888774433

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.06  E-value=0.016  Score=51.77  Aligned_cols=178  Identities=13%  Similarity=0.160  Sum_probs=110.3

Q ss_pred             hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293            4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD   83 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~   83 (236)
                      ..+...+|.++.-+....+.....+++.+..++...+..-. ... +.+||.+.+.|.+..+++++.+..+|..++..-+
T Consensus       250 ~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~svid  327 (569)
T KOG1242|consen  250 YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID  327 (569)
T ss_pred             chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc
Confidence            34455566666655545667778888889988877554333 333 3899999999999999999999999998877555


Q ss_pred             hhHHh--------------------------------hhcccHHHHHHHHhcc---CCHHHHHHHHHHHHHhcccchhhh
Q 044293           84 LKQSL--------------------------------ASMETIYRLNWIIQSS---SSQETVKLASSLICSLAMLDKNKA  128 (236)
Q Consensus        84 ~~~~i--------------------------------~~~g~i~~L~~lL~~~---~~~~~~~~a~~~L~~Ls~~~~~~~  128 (236)
                      |....                                ++...+..++-+|+++   ++.++++.++.++.|++..-+...
T Consensus       328 N~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~  407 (569)
T KOG1242|consen  328 NPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPK  407 (569)
T ss_pred             cHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHH
Confidence            53321                                1122233333333332   245677778888888877553333


Q ss_pred             hhcc--cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcC
Q 044293          129 RFGV--AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS  186 (236)
Q Consensus       129 ~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~  186 (236)
                      .+..  ...+|.|=..+....|+++..+.++|..+-..-.+...   .+.+|.+.+.+.+
T Consensus       408 ~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~  464 (569)
T KOG1242|consen  408 DLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTS  464 (569)
T ss_pred             HHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhcc
Confidence            3332  34444455555566788999999998666543222221   4555555555543

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.03  E-value=0.013  Score=53.44  Aligned_cols=186  Identities=12%  Similarity=0.107  Sum_probs=103.4

Q ss_pred             chHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhhCCC
Q 044293            3 APRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNLSLN   81 (236)
Q Consensus         3 ~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~   81 (236)
                      ++++++..|+|++.|.++|+.++..|+..++.|++.+|.|.-      -.-|.+..++... +.=+.-..+....+|+--
T Consensus       176 PeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL------~LAP~ffkllttSsNNWmLIKiiKLF~aLtpl  249 (877)
T KOG1059|consen  176 PEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL------QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPL  249 (877)
T ss_pred             hHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc------cccHHHHHHHhccCCCeehHHHHHHHhhcccc
Confidence            578899999999999999999999999999999999988754      2356666776433 333333444555555544


Q ss_pred             CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHH--Hhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHH
Q 044293           82 PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLIC--SLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSL  158 (236)
Q Consensus        82 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~--~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL  158 (236)
                      +.   .+. .-.+++|..++.+..-..+.=.|..++-  +++..- +.-+.+  .=.++.|-.++.+.++..+.-.+.++
T Consensus       250 EP---RLg-KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam  323 (877)
T KOG1059|consen  250 EP---RLG-KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAM  323 (877)
T ss_pred             Cc---hhh-hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHH
Confidence            32   222 3367888888876521111111222211  111110 101110  12344555555556666666777777


Q ss_pred             HHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293          159 AELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       159 ~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~  205 (236)
                      +.+...+...-+    ..-..++..|.+.| +.++-.|+..|.-+..
T Consensus       324 ~KI~ktHp~~Vq----a~kdlIlrcL~DkD-~SIRlrALdLl~gmVs  365 (877)
T KOG1059|consen  324 SKILKTHPKAVQ----AHKDLILRCLDDKD-ESIRLRALDLLYGMVS  365 (877)
T ss_pred             HHHhhhCHHHHH----HhHHHHHHHhccCC-chhHHHHHHHHHHHhh
Confidence            666643221111    01133455555553 4555555555555443

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.14  Score=42.96  Aligned_cols=213  Identities=14%  Similarity=0.170  Sum_probs=141.9

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHH--hhccCCChHHHHHHHHHHHhhCC-CCch
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLL--GLSKSSSPIIRTLSLSILLNLSL-NPDL   84 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv--~lL~~~~~~~~~~a~~~L~~l~~-~~~~   84 (236)
                      +..+.++...-.++.++...|.+.+..++.. +..-+.+.++ .....+-  ++-...+.-.|......+..+.. .+..
T Consensus       128 eilklildcIggeddeVAkAAiesikrialf-paaleaiFeS-ellDdlhlrnlaakcndiaRvRVleLIieifSiSpes  205 (524)
T KOG4413|consen  128 EILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFES-ELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPES  205 (524)
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhccc-ccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHH
Confidence            3456667777777888888888889988886 4455666665 4443332  22222244456666776665544 4566


Q ss_pred             hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC--CcHHHHHHH----HHH
Q 044293           85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP--SNPAGHHLL----SSL  158 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~----~aL  158 (236)
                      -......|.+..|..-++-.+|.-++.++......|+..+..++-+.+.|.|..+-.++.-.  +|-..-.++    +.+
T Consensus       206 aneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkff  285 (524)
T KOG4413|consen  206 ANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFF  285 (524)
T ss_pred             HhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh
Confidence            77788899999998888754466778889999999999998888888899999999888643  222222222    334


Q ss_pred             HHHhcCCCChHHHHHh--CcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHH
Q 044293          159 AELVQFHGNSTLAVRA--GAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVD  225 (236)
Q Consensus       159 ~~L~~~~~~~~~~~~~--g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~  225 (236)
                      .+....+-.-++++++  -++.-..+.+... +++.++.|+.++..|-++.++...+...|-  |..=+
T Consensus       286 gkeaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilGSnteGadlllkTgp--paaeh  351 (524)
T KOG4413|consen  286 GKEAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILGSNTEGADLLLKTGP--PAAEH  351 (524)
T ss_pred             cchHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhccCCcchhHHHhccCC--hHHHH
Confidence            4444444333344332  2233344445444 377889999999999999999999988863  44433

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.96  E-value=0.0091  Score=46.53  Aligned_cols=121  Identities=17%  Similarity=0.057  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHhc--------------cCcHHHHHhhccCC------ChHHHHHHHHHHHhhCCCC
Q 044293           23 EDQQKALQTLASITRVSPQYRSLLAQT--------------DGAISTLLGLSKSS------SPIIRTLSLSILLNLSLNP   82 (236)
Q Consensus        23 ~~~~~a~~~L~~l~~~~~~~~~~i~~~--------------~g~i~~Lv~lL~~~------~~~~~~~a~~~L~~l~~~~   82 (236)
                      .....++..|.|+++.+...+..+...              ...+..|++.+..+      ...-....+.++.|++..+
T Consensus        10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~   89 (192)
T PF04063_consen   10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP   89 (192)
T ss_pred             chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence            344456677788887643322222211              13677777776441      2233567788999999999


Q ss_pred             chhHHhhhc--cc--HHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc---cCcHHHHHHhhc
Q 044293           83 DLKQSLASM--ET--IYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV---AGTVQVLVKAVS  144 (236)
Q Consensus        83 ~~~~~i~~~--g~--i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~---~g~i~~Lv~lL~  144 (236)
                      ++|..+.+.  +.  +..|+-..++. +..=+.-++++|.|+|.+.+.-..+..   .+.+|.|+--|.
T Consensus        90 ~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   90 EGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            999999843  34  67777777776 667777899999999998866555544   355555555554

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=96.95  E-value=0.11  Score=44.64  Aligned_cols=210  Identities=18%  Similarity=0.143  Sum_probs=124.8

Q ss_pred             HHHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CCh-HHHHHHHHHHHhhCCC
Q 044293            5 RVRETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSP-IIRTLSLSILLNLSLN   81 (236)
Q Consensus         5 ~~~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~-~~~~~a~~~L~~l~~~   81 (236)
                      ++.+.|..+++-+. +.....|+.++-.|..-+.+ +++++.|..+ |.+..+++.+.. ++. ..--.++.+++-++.+
T Consensus        18 rf~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~-g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d   95 (361)
T PF07814_consen   18 RFADEVEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAH-GLVKRLFKALSDAPDDDILALATAAILYVLSRD   95 (361)
T ss_pred             hHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHc-CcHHHHHHHhccccchHHHHHHHHHHHHHHccC
Confidence            34678889999997 34456788887777777775 7899999998 999999999843 333 3333334455556665


Q ss_pred             CchhHHhhhcccHHHHHHHHhc--c----CC-------------------------------------HHHHHHHHHHHH
Q 044293           82 PDLKQSLASMETIYRLNWIIQS--S----SS-------------------------------------QETVKLASSLIC  118 (236)
Q Consensus        82 ~~~~~~i~~~g~i~~L~~lL~~--~----~~-------------------------------------~~~~~~a~~~L~  118 (236)
                      ..+-..+-+.+.+..+++++..  .    .+                                     ...+.-|..+|-
T Consensus        96 ~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le  175 (361)
T PF07814_consen   96 GLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALE  175 (361)
T ss_pred             CcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHH
Confidence            5554444455555555555550  0    00                                     011111223333


Q ss_pred             Hhc---------------ccchhhhhhcccCcHHHHHHhhcC----CC---------c---HHHHHHHHHHHHHhc-CCC
Q 044293          119 SLA---------------MLDKNKARFGVAGTVQVLVKAVSA----PS---------N---PAGHHLLSSLAELVQ-FHG  166 (236)
Q Consensus       119 ~Ls---------------~~~~~~~~i~~~g~i~~Lv~lL~~----~~---------~---~~~~~a~~aL~~L~~-~~~  166 (236)
                      .++               ..+..|..+...|++..++.++.+    .+         .   .....++++|-+.+. +++
T Consensus       176 ~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~  255 (361)
T PF07814_consen  176 SLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEE  255 (361)
T ss_pred             HHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCcc
Confidence            331               011235555667899999999862    11         1   134667788877775 467


Q ss_pred             ChHHHHHh--CcHHHHHHHh-cCC--ChhhHHHHHHHHHHHHcCC-hhhHHHHHhc
Q 044293          167 NSTLAVRA--GAVSELIHLI-GST--EAEDLAGTSLAVLNLLARF-DEGMIALTKT  216 (236)
Q Consensus       167 ~~~~~~~~--g~i~~lv~ll-~~~--~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~  216 (236)
                      |.......  +.++.....+ ...  ..+++...+++++.|++.+ |+..+.+...
T Consensus       256 nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~  311 (361)
T PF07814_consen  256 NQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASP  311 (361)
T ss_pred             chHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhh
Confidence            77766553  4444444333 221  1234567899999999975 4665555544

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.91  E-value=0.006  Score=46.04  Aligned_cols=115  Identities=17%  Similarity=0.265  Sum_probs=80.6

Q ss_pred             HHHhHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc--CCChHHHHHHHHHHHhhCCC
Q 044293            5 RVRETINNCVSRS-QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK--SSSPIIRTLSLSILLNLSLN   81 (236)
Q Consensus         5 ~~~~~i~~lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~   81 (236)
                      ...+.+...++.+ ..++.+....+..++..+--.-++.-..+...+|..+.+..+..  +.+...+..++.+|..-|.+
T Consensus        39 ~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d  118 (157)
T PF11701_consen   39 EFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID  118 (157)
T ss_dssp             HHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc
Confidence            3445555555444 33334466677777877776666665555555699999999998  77888899999999777776


Q ss_pred             CchhHHhhhcccHHHHHHHHhccCCHH-HHHHHHHHHHHh
Q 044293           82 PDLKQSLASMETIYRLNWIIQSSSSQE-TVKLASSLICSL  120 (236)
Q Consensus        82 ~~~~~~i~~~g~i~~L~~lL~~~~~~~-~~~~a~~~L~~L  120 (236)
                      +..|..|.++ +++.|-+.++.+.++. ++..|+..|..|
T Consensus       119 ~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl  157 (157)
T PF11701_consen  119 KSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCKL  157 (157)
T ss_dssp             HHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred             HHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence            6666666644 7889999997653555 788888888764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=96.84  E-value=0.035  Score=46.22  Aligned_cols=181  Identities=12%  Similarity=0.119  Sum_probs=110.8

Q ss_pred             CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC--ChHHHHHHHHHHHhhCCCCchhHHhhh-cccHHHH
Q 044293           21 SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS--SPIIRTLSLSILLNLSLNPDLKQSLAS-METIYRL   97 (236)
Q Consensus        21 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~i~~-~g~i~~L   97 (236)
                      ++-.+--|+.++.++... ++.|..+-..+-.-..++.++++.  +.++|-.++-+++.++..+...+.|-+ .+.+.-+
T Consensus       162 ~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl  240 (432)
T COG5231         162 DFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL  240 (432)
T ss_pred             HHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            444555677788888765 455544333324556777777763  567888999999999988877655543 3677777


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhcc-cc-hhhhhhcccCcHHHHHHhhc-------------------------------
Q 044293           98 NWIIQSSSSQETVKLASSLICSLAM-LD-KNKARFGVAGTVQVLVKAVS-------------------------------  144 (236)
Q Consensus        98 ~~lL~~~~~~~~~~~a~~~L~~Ls~-~~-~~~~~i~~~g~i~~Lv~lL~-------------------------------  144 (236)
                      +++.+......+.+.+++.+.|++. .+ +.-....-.|-+.+-+++|.                               
T Consensus       241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD  320 (432)
T COG5231         241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD  320 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            7777754335566677777777765 11 11112222233333344333                               


Q ss_pred             ----------------------------------------------CCCcH-HHHHHHHHHHHHhc-CCCChHHHHHhCc
Q 044293          145 ----------------------------------------------APSNP-AGHHLLSSLAELVQ-FHGNSTLAVRAGA  176 (236)
Q Consensus       145 ----------------------------------------------~~~~~-~~~~a~~aL~~L~~-~~~~~~~~~~~g~  176 (236)
                                                                    +.++. ...-|+.=+..+.. .|+.+..+.+.|+
T Consensus       321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~  400 (432)
T COG5231         321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV  400 (432)
T ss_pred             HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence                                                          22221 11234444444454 5667777788888


Q ss_pred             HHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293          177 VSELIHLIGSTEAEDLAGTSLAVLNLL  203 (236)
Q Consensus       177 i~~lv~ll~~~~~~~~~~~a~~~L~~l  203 (236)
                      =..+++|+++++ ++++-.|+.++.-+
T Consensus       401 k~~im~L~nh~d-~~VkfeAl~a~q~~  426 (432)
T COG5231         401 KEIIMNLINHDD-DDVKFEALQALQTC  426 (432)
T ss_pred             HHHHHHHhcCCC-chhhHHHHHHHHHH
Confidence            888999998875 67887888777543

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.84  E-value=0.034  Score=51.03  Aligned_cols=147  Identities=19%  Similarity=0.187  Sum_probs=95.6

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL   84 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~   84 (236)
                      |+...-+.+++.....+-+...-....+.+.+...++-     .. +.+..++.=...+++.+|..|++.+..+-.    
T Consensus        46 DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~-~avnt~~kD~~d~np~iR~lAlrtm~~l~v----  115 (734)
T KOG1061|consen   46 DVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AI-LAVNTFLKDCEDPNPLIRALALRTMGCLRV----  115 (734)
T ss_pred             chHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HH-hhhhhhhccCCCCCHHHHHHHhhceeeEee----
Confidence            44445555555555555444454555566666554432     11 455555555555566666555544433222    


Q ss_pred             hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293           85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF  164 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~  164 (236)
                       ..+. .-...++...++++ ++-++..++....++=..+  .....+.|.++.|-.++.+.++.+..+|+.+|..+...
T Consensus       116 -~~i~-ey~~~Pl~~~l~d~-~~yvRktaa~~vakl~~~~--~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~  190 (734)
T KOG1061|consen  116 -DKIT-EYLCDPLLKCLKDD-DPYVRKTAAVCVAKLFDID--PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHES  190 (734)
T ss_pred             -hHHH-HHHHHHHHHhccCC-ChhHHHHHHHHHHHhhcCC--hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence             1121 12566888888887 7888888887777765544  67777899999999999988999999999999999875


Q ss_pred             CC
Q 044293          165 HG  166 (236)
Q Consensus       165 ~~  166 (236)
                      +.
T Consensus       191 ~~  192 (734)
T KOG1061|consen  191 HP  192 (734)
T ss_pred             CC
Confidence            54

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.78  E-value=0.0056  Score=43.61  Aligned_cols=71  Identities=20%  Similarity=0.262  Sum_probs=57.7

Q ss_pred             HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhh
Q 044293            7 RETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNL   78 (236)
Q Consensus         7 ~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l   78 (236)
                      -+.+..|+++|. +.++....-|+.-|..++...|..|..+.+. |+=+.+..+++++|++++..|+.++..+
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~l-g~K~~vM~Lm~h~d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKL-GAKERVMELMNHEDPEVRYEALLAVQKL  113 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHH-SHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhc-ChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            457889999994 4566677778888999999989888888887 9999999999999999999999887643

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.72  E-value=0.13  Score=39.62  Aligned_cols=112  Identities=17%  Similarity=0.212  Sum_probs=81.5

Q ss_pred             CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHH
Q 044293           21 SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWI  100 (236)
Q Consensus        21 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~l  100 (236)
                      ++.+|..++.++..++...+    .+++  .++|.+...|+++++.+|..|+.+|.+|...+-.|..   ...+..++..
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~----~~ve--~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYP----NLVE--PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCc----HHHH--hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHH
Confidence            46789999999999987643    3454  5899999999999999999999999998775433221   2233777788


Q ss_pred             HhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC
Q 044293          101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA  145 (236)
Q Consensus       101 L~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~  145 (236)
                      +... +++++..|...+..+..... ...+  ...++.++..+..
T Consensus        72 l~D~-~~~Ir~~A~~~~~e~~~~~~-~~~i--~~~~~e~i~~l~~  112 (178)
T PF12717_consen   72 LVDE-NPEIRSLARSFFSELLKKRN-PNII--YNNFPELISSLNN  112 (178)
T ss_pred             HcCC-CHHHHHHHHHHHHHHHHhcc-chHH--HHHHHHHHHHHhC
Confidence            8766 89999999999998887631 2222  2445555555554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.70  E-value=0.16  Score=48.59  Aligned_cols=196  Identities=11%  Similarity=0.019  Sum_probs=134.9

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHH-HHHhcCChHHHHHHHhccCcHHHHHhhccCC---ChHHHHHHHHHHHhhCCC-C
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTL-ASITRVSPQYRSLLAQTDGAISTLLGLSKSS---SPIIRTLSLSILLNLSLN-P   82 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L-~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~l~~~-~   82 (236)
                      +.-|..+++|+++-.+.+--.+-.= ..|+.+ +.-+..+++. +|-..++..|.++   +++-+..|+-+|..+..+ +
T Consensus       512 GIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~SCQ~dLvKe-~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~  589 (1387)
T KOG1517|consen  512 GIFPYVLKLLQSSARELRPILVFIWAKILAVD-PSCQADLVKE-NGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK  589 (1387)
T ss_pred             chHHHHHHHhccchHhhhhhHHHHHHHHHhcC-chhHHHHHhc-cCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc
Confidence            4568889999988777665433332 345554 5556667776 8888999998762   357778888888887665 5


Q ss_pred             chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhccc-chhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293           83 DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAML-DKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL  161 (236)
Q Consensus        83 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L  161 (236)
                      -++....+.+.|..=+..|..+..+-.+.=++-+|..|=.+ ++.+-.=.+.++.+.|+.+|.+..++++..|+-||..+
T Consensus       590 lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtf  669 (1387)
T KOG1517|consen  590 LGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTF  669 (1387)
T ss_pred             hhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence            67788888999998888887752356677788888877544 45555555689999999999999999999999999887


Q ss_pred             hcC-----CCChHH-----------HHHhCcHH----HHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293          162 VQF-----HGNSTL-----------AVRAGAVS----ELIHLIGSTEAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       162 ~~~-----~~~~~~-----------~~~~g~i~----~lv~ll~~~~~~~~~~~a~~~L~~l~~~  206 (236)
                      -..     ++....           ..-...++    .++.++++++ +-+....+-.|......
T Consensus       670 l~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgs-plvr~ev~v~ls~~~~g  733 (1387)
T KOG1517|consen  670 LSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGS-PLVRTEVVVALSHFVVG  733 (1387)
T ss_pred             hcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccc-hHHHHHHHHHHHHHHHh
Confidence            663     221111           11123333    5666777764 55655566666665543

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.64  E-value=0.21  Score=46.58  Aligned_cols=168  Identities=13%  Similarity=0.110  Sum_probs=119.1

Q ss_pred             hcCCCHHHHHHHHHH-HHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHH
Q 044293           17 SQSDSYEDQQKALQT-LASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIY   95 (236)
Q Consensus        17 L~~~~~~~~~~a~~~-L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~   95 (236)
                      +.+++...+..|.+. |..++.+++ .    -   ...+-+++...+.|.++++..--=|.+.+........+    .+.
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~d-m----s---sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avN   95 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGED-M----S---SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVN   95 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCC-h----H---HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHH
Confidence            334455566667666 455655533 1    1   35666667766778888776666666777765543333    456


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhC
Q 044293           96 RLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAG  175 (236)
Q Consensus        96 ~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g  175 (236)
                      .+.+=+++. ++.+|..|.+++..+=..    ..+  ...++++.+.+.++++.+++.|+-|+..+=+  -.+....+.|
T Consensus        96 ti~kDl~d~-N~~iR~~AlR~ls~l~~~----el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g  166 (757)
T COG5096          96 TIQKDLQDP-NEEIRGFALRTLSLLRVK----ELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELG  166 (757)
T ss_pred             HHHhhccCC-CHHHHHHHHHHHHhcChH----HHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhccc
Confidence            777778888 899999998887765332    222  3568999999999999999999999877653  3455566789


Q ss_pred             cHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293          176 AVSELIHLIGSTEAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       176 ~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~  206 (236)
                      .+..+..++.+.+ +.+.-.|+.+|..+...
T Consensus       167 ~~~~l~~l~~D~d-P~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         167 LIDILKELVADSD-PIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHHhhCCC-chHHHHHHHHHHHhchh
Confidence            9999999998885 78888999998886543

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=96.63  E-value=0.2  Score=43.98  Aligned_cols=194  Identities=19%  Similarity=0.190  Sum_probs=117.3

Q ss_pred             HHHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhc-cCCChHHHHHHHHHHHhhCCCC
Q 044293            5 RVRETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS-KSSSPIIRTLSLSILLNLSLNP   82 (236)
Q Consensus         5 ~~~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~   82 (236)
                      +..+.+..++.+.. ..++..+..+++.+..+...-+.. . ..+  +.+..+...+ ...++..+..+..++.-+++.=
T Consensus       186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~-~-~l~--~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL  261 (415)
T PF12460_consen  186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD-D-DLD--EFLDSLLQSISSSEDSELRPQALEILIWITKAL  261 (415)
T ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh-h-hHH--HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHH
Confidence            34567778888875 445777888888888887662111 1 111  2344444444 2333333344444433322100


Q ss_pred             chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhccc-chh-------------hhhhcccCcHHHHHHhhcCCCc
Q 044293           83 DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAML-DKN-------------KARFGVAGTVQVLVKAVSAPSN  148 (236)
Q Consensus        83 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~-~~~-------------~~~i~~~g~i~~Lv~lL~~~~~  148 (236)
                      -.|..-.....+..|+.+|.   ++++...++..+.-+..+ ++.             |+++. ...+|.|++-.+..+.
T Consensus       262 v~R~~~~~~~~~~~L~~lL~---~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~~~  337 (415)
T PF12460_consen  262 VMRGHPLATELLDKLLELLS---SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEADD  337 (415)
T ss_pred             HHcCCchHHHHHHHHHHHhC---ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhcCh
Confidence            00000012235666777776   457888888888877666 322             22222 4567778777777766


Q ss_pred             HHHHHHHHHHHHHhcCCCChHHHHH-hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh
Q 044293          149 PAGHHLLSSLAELVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD  207 (236)
Q Consensus       149 ~~~~~a~~aL~~L~~~~~~~~~~~~-~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~  207 (236)
                      ..+.+.+.+|.++..+-+....+-+ ...+|.+++-|..++ .+++..++.+|..+..+.
T Consensus       338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~-~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPD-ADVLLSSLETLKMILEEA  396 (415)
T ss_pred             hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHcC
Confidence            6788889999998886553333333 468999999997774 678899999999887654

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.59  E-value=0.12  Score=47.73  Aligned_cols=185  Identities=14%  Similarity=0.067  Sum_probs=110.6

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHH---hc--------------cCcHHHHHhhccCCCh-------HHHH
Q 044293           14 VSRSQSDSYEDQQKALQTLASITRVSPQYRSLLA---QT--------------DGAISTLLGLSKSSSP-------IIRT   69 (236)
Q Consensus        14 v~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~---~~--------------~g~i~~Lv~lL~~~~~-------~~~~   69 (236)
                      +..++++++++..++.+.=.+.|.+.-+......   +.              .+++|.|+++|...++       ..-.
T Consensus       265 l~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~k  344 (859)
T KOG1241|consen  265 LAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAK  344 (859)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHH
Confidence            4455688888988888887777764222111111   11              2678889998865322       1112


Q ss_pred             HHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchh-hhhhcccCcHHHHHHhhcCCCc
Q 044293           70 LSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN-KARFGVAGTVQVLVKAVSAPSN  148 (236)
Q Consensus        70 ~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~  148 (236)
                      .|-.+|.-++..  .++.|+. ..+|.+-..+++. |-.-++.|+-+....-..++. +..=...+++|.++.++.+++.
T Consensus       345 AAg~CL~l~A~~--~~D~Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl  420 (859)
T KOG1241|consen  345 AAGVCLMLFAQC--VGDDIVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL  420 (859)
T ss_pred             HHHHHHHHHHHH--hcccchh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh
Confidence            222233322221  1122222 3444444466655 555666666666655554432 2222247899999999998887


Q ss_pred             HHHHHHHHHHHHHhcCCC-ChH-HHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          149 PAGHHLLSSLAELVQFHG-NST-LAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       149 ~~~~~a~~aL~~L~~~~~-~~~-~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                      -++..+.|+|+.++.+-. -+. .....+.++.++.=|++.  |.+..++++++.+|+
T Consensus       421 ~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De--Prva~N~CWAf~~La  476 (859)
T KOG1241|consen  421 WVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE--PRVASNVCWAFISLA  476 (859)
T ss_pred             hhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC--chHHHHHHHHHHHHH
Confidence            788999999999997533 221 223356677777777764  678899999999998

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=96.58  E-value=0.028  Score=49.19  Aligned_cols=135  Identities=13%  Similarity=0.203  Sum_probs=102.5

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh---HHHHHHHhccCcHHHHHhhccCCC-------hHHHHHHHHHHH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSP---QYRSLLAQTDGAISTLLGLSKSSS-------PIIRTLSLSILL   76 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~---~~~~~i~~~~g~i~~Lv~lL~~~~-------~~~~~~a~~~L~   76 (236)
                      ......+..+++..+.+.|..|+-...+++++++   .+|+.+.++ =|.+.+=++|.+++       .-.+..++.+|.
T Consensus        10 ~~a~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeA-VGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLa   88 (698)
T KOG2611|consen   10 SPALDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEA-VGFHFLDRLLRTKSGPGDCPDDVYLQISITVLA   88 (698)
T ss_pred             ccchhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHH-hccchHHHHhhcCCCCCCCcHHHHHHHHHHHHH
Confidence            3444557777877777889989888899988743   467778888 78999999987642       244677888999


Q ss_pred             hhCCCCch--hHHhhhcccHHHHHHHHhccCCHH------HHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhc
Q 044293           77 NLSLNPDL--KQSLASMETIYRLNWIIQSSSSQE------TVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVS  144 (236)
Q Consensus        77 ~l~~~~~~--~~~i~~~g~i~~L~~lL~~~~~~~------~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~  144 (236)
                      .+|..|+-  ...++  +.||.|..++..+.+++      +...+-.+|...+..+-....+...|+++.+-++-.
T Consensus        89 cFC~~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~  162 (698)
T KOG2611|consen   89 CFCRVPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE  162 (698)
T ss_pred             HHhCChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence            99998864  33443  46888888888654444      777888999999988877788888999999986654

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.58  E-value=0.02  Score=46.51  Aligned_cols=83  Identities=17%  Similarity=0.175  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc-CChhhHHHHHhcCCcHHHHHHH
Q 044293          149 PAGHHLLSSLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA-RFDEGMIALTKTDQIVSLMVDV  226 (236)
Q Consensus       149 ~~~~~a~~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g~~i~~lv~~  226 (236)
                      .....|++.|-.+|. +++.+..+.+...+..++++|.....+.++..++.+|..+. .++.+...|-+.+| +..++.+
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~G-l~~v~~l  184 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNG-LSTVCSL  184 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCC-HHHHHHH
Confidence            345678899988886 77888888899999999999965434778888888887654 68899999999999 7999999


Q ss_pred             hhCCcc
Q 044293          227 LKGRSM  232 (236)
Q Consensus       227 l~~~~~  232 (236)
                      +++.+.
T Consensus       185 lk~~~~  190 (257)
T PF08045_consen  185 LKSKST  190 (257)
T ss_pred             Hccccc
Confidence            987653

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.54  E-value=0.031  Score=52.30  Aligned_cols=155  Identities=14%  Similarity=0.064  Sum_probs=106.8

Q ss_pred             HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhh-h-cccHHHHHHHHhccCCHHHHHHHHHHHHH
Q 044293           42 YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLA-S-METIYRLNWIIQSSSSQETVKLASSLICS  119 (236)
Q Consensus        42 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~-~g~i~~L~~lL~~~~~~~~~~~a~~~L~~  119 (236)
                      +|+.|..  +++|.|++.........+.+=+.+|.++-.+-. ++.+. + ...+|.|++.|.-. |.+++.++..++.-
T Consensus       860 ykQRfF~--~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~-D~~v~vstl~~i~~  935 (1030)
T KOG1967|consen  860 YKQRFFC--DIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMP-DVIVRVSTLRTIPM  935 (1030)
T ss_pred             HHHHHHH--hhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCC-ccchhhhHhhhhhH
Confidence            4666663  789999999885544455555666666544322 23333 2 56889999999888 89999999988886


Q ss_pred             hcccchhhhhhcccCcHHHHHHhhcCCC---cHHHHHHHHHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHH
Q 044293          120 LAMLDKNKARFGVAGTVQVLVKAVSAPS---NPAGHHLLSSLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGT  195 (236)
Q Consensus       120 Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~~~~~a~~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~  195 (236)
                      +......-.--.-.-.+|.+..+=.+.+   ..++..|+.+|..|.. -|.++-.-.+..++..++..|.+. .+-+++.
T Consensus       936 ~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~e 1014 (1030)
T KOG1967|consen  936 LLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKE 1014 (1030)
T ss_pred             HHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHH
Confidence            5543322221112456677766665544   4578999999999998 566555556778889999999887 5778888


Q ss_pred             HHHHHH
Q 044293          196 SLAVLN  201 (236)
Q Consensus       196 a~~~L~  201 (236)
                      |+.+=.
T Consensus      1015 Av~tR~ 1020 (1030)
T KOG1967|consen 1015 AVDTRQ 1020 (1030)
T ss_pred             HHHHhh
Confidence            887643

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.52  E-value=0.17  Score=42.34  Aligned_cols=170  Identities=17%  Similarity=0.182  Sum_probs=109.6

Q ss_pred             HhHHHHHH-HHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC-CC-c
Q 044293            7 RETINNCV-SRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL-NP-D   83 (236)
Q Consensus         7 ~~~i~~lv-~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~-~   83 (236)
                      .+.+..++ .-+++.++.+|..|+++|..++.-+.+    +.+  ..++.+...++.++++++..|+.++..+.. +. +
T Consensus        25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~----~a~--~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~   98 (298)
T PF12719_consen   25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE----LAK--EHLPLFLQALQKDDEEVKITALKALFDLLLTHGID   98 (298)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH----HHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence            35566665 556789999999999999999886542    233  357888888877788999999999987533 22 1


Q ss_pred             hhH-------HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCC---cHHHHH
Q 044293           84 LKQ-------SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPS---NPAGHH  153 (236)
Q Consensus        84 ~~~-------~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~~~~~  153 (236)
                      .-.       .......+..+.+.+++. +++++..|+..++.|-.......   ....+..|+-+--++.   ....+.
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ  174 (298)
T PF12719_consen   99 IFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQ  174 (298)
T ss_pred             hccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHH
Confidence            111       122356788888888888 89999999999998876543222   1344555554443331   122333


Q ss_pred             HHHH-HHHHhcCCCChHHHHHhCcHHHHHHHhcC
Q 044293          154 LLSS-LAELVQFHGNSTLAVRAGAVSELIHLIGS  186 (236)
Q Consensus       154 a~~a-L~~L~~~~~~~~~~~~~g~i~~lv~ll~~  186 (236)
                      ++.. +-..|.+....+..+....+|.+-.+.+.
T Consensus       175 ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  175 CLSVFFPVYASSSPENQERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence            3333 44556555444555566666776666654

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.50  E-value=0.15  Score=39.22  Aligned_cols=111  Identities=17%  Similarity=0.138  Sum_probs=79.6

Q ss_pred             ChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhh
Q 044293           64 SPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAV  143 (236)
Q Consensus        64 ~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL  143 (236)
                      ++.+|.+++.+++-|+.--.+   ++ ...++.+...|++. ++.+|+.|+.+|.+|...+-.|..   ...+..++..+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~---~v-e~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN---LV-EPYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH---HH-HhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence            467888999999877653322   22 33688899999988 899999999999999876533322   22337888888


Q ss_pred             cCCCcHHHHHHHHHHHHHhcCC-CChHHHHHhCcHHHHHHHhcC
Q 044293          144 SAPSNPAGHHLLSSLAELVQFH-GNSTLAVRAGAVSELIHLIGS  186 (236)
Q Consensus       144 ~~~~~~~~~~a~~aL~~L~~~~-~~~~~~~~~g~i~~lv~ll~~  186 (236)
                      .+.++.++..|..++..+.... ++.-    ...+|.++.-++.
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~~  112 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKKRNPNII----YNNFPELISSLNN  112 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHhC
Confidence            8899999999999998888763 2211    3445566665554

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.48  E-value=0.33  Score=42.09  Aligned_cols=199  Identities=13%  Similarity=0.159  Sum_probs=130.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC--------------------------C--------hHHHHHHH
Q 044293           27 KALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS--------------------------S--------PIIRTLSL   72 (236)
Q Consensus        27 ~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--------------------------~--------~~~~~~a~   72 (236)
                      .|+..|-.+....+..-..|... +|+..+++.+...                          +        ..+.+..+
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~-~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lL   81 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNL-NGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLL   81 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHH
Confidence            45566666666655556667776 8888887765421                          0        01123334


Q ss_pred             HHHHhhCC-CCchh---HHhhh-cccHHHHHHHHhccC--CHHHHHHHHHHHHHhccc-chhhhhhcccCcHHHHHHhhc
Q 044293           73 SILLNLSL-NPDLK---QSLAS-METIYRLNWIIQSSS--SQETVKLASSLICSLAML-DKNKARFGVAGTVQVLVKAVS  144 (236)
Q Consensus        73 ~~L~~l~~-~~~~~---~~i~~-~g~i~~L~~lL~~~~--~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~  144 (236)
                      .++..+.. .....   +.+.+ ...+..|..++++..  -+.+-..|+.++..+-.+ +..-..+.+.|.++.+++.+.
T Consensus        82 k~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~  161 (379)
T PF06025_consen   82 KFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAIT  161 (379)
T ss_pred             HHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHh
Confidence            44544444 33322   23445 566777777887653  357777888888876655 466677778999999999998


Q ss_pred             -CC---CcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChh------hHHHHHHHHHHHHcC-ChhhHHHH
Q 044293          145 -AP---SNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAE------DLAGTSLAVLNLLAR-FDEGMIAL  213 (236)
Q Consensus       145 -~~---~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~------~~~~~a~~~L~~l~~-~~~~~~~i  213 (236)
                       .+   +.++...--.+|..+|.+..+.+.+.+.+.++.+++++.+.+..      +.....=..+..|.+ +|.-|..+
T Consensus       162 ~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i  241 (379)
T PF06025_consen  162 AKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDI  241 (379)
T ss_pred             ccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHH
Confidence             53   44566666688899999999999999999999999999875321      222333355666775 57888887


Q ss_pred             HhcCCcHHHHHHHhh
Q 044293          214 TKTDQIVSLMVDVLK  228 (236)
Q Consensus       214 ~~~g~~i~~lv~~l~  228 (236)
                      .+.  ++..+-++..
T Consensus       242 ~~~--ii~~l~~l~~  254 (379)
T PF06025_consen  242 IDA--IIKILDRLVE  254 (379)
T ss_pred             HHH--HHHHHHHHHH
Confidence            764  4455544443

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.47  E-value=0.03  Score=42.21  Aligned_cols=143  Identities=15%  Similarity=0.092  Sum_probs=90.9

Q ss_pred             HHHHHHHhc--CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-CchhH
Q 044293           10 INNCVSRSQ--SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDLKQ   86 (236)
Q Consensus        10 i~~lv~~L~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~   86 (236)
                      +..++..|.  ...+++|..++-++..+.   +..++.+.+.  .-+.+-.++...+.+-...+..++..+-.- ++...
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~--~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~   79 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK--ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS   79 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH--HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH--HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence            345556664  345567877777777774   3345555432  333333444443333455666777665444 45554


Q ss_pred             Hhh-hcccHHHHHHHHh--ccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC-CCcH-HHHHHHHHHH
Q 044293           87 SLA-SMETIYRLNWIIQ--SSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA-PSNP-AGHHLLSSLA  159 (236)
Q Consensus        87 ~i~-~~g~i~~L~~lL~--~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~-~~~~a~~aL~  159 (236)
                      .+. ..|.++.++.+..  .. +......++.+|..-|.+.+.|..|.+ .+++.|-++.+. .++. ++..|+-+|.
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSK-DRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHh
Confidence            444 7899999999998  44 788888888888888888877777765 558999999964 4444 5666665554

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.45  E-value=0.28  Score=41.69  Aligned_cols=185  Identities=13%  Similarity=0.046  Sum_probs=129.1

Q ss_pred             HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-chhH-----Hhh-h-cccHHHHHHHHhccCCHHHHHHH
Q 044293           42 YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DLKQ-----SLA-S-METIYRLNWIIQSSSSQETVKLA  113 (236)
Q Consensus        42 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~-----~i~-~-~g~i~~L~~lL~~~~~~~~~~~a  113 (236)
                      ....+... |.+..|+..|..-+-+.+..+..+..++-... +++.     .+. . ...+..|+.--.   ++++-..+
T Consensus        68 La~Ei~~~-dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~  143 (335)
T PF08569_consen   68 LAQEIYRS-DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNC  143 (335)
T ss_dssp             HHHHHHHH-THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHH
T ss_pred             HHHHHHHh-CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchH
Confidence            34556666 99999999999888899998888888875553 2332     232 2 233333333322   57888889


Q ss_pred             HHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH-hcCCCChHHHHHh---CcHHHHHHHhcCCCh
Q 044293          114 SSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL-VQFHGNSTLAVRA---GAVSELIHLIGSTEA  189 (236)
Q Consensus       114 ~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L-~~~~~~~~~~~~~---g~i~~lv~ll~~~~~  189 (236)
                      -..|..+..++.....+.....+..+.+.+..++.++...|..++..+ +.++.-...+...   ..+...-.||.+++ 
T Consensus       144 g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~N-  222 (335)
T PF08569_consen  144 GDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSN-  222 (335)
T ss_dssp             HHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SS-
T ss_pred             HHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCC-
Confidence            999999999998777888888899999999999999999999999774 4555555555543   34567777887774 


Q ss_pred             hhHHHHHHHHHHHHcCChhhHHH---HHhcCCcHHHHHHHhhCCc
Q 044293          190 EDLAGTSLAVLNLLARFDEGMIA---LTKTDQIVSLMVDVLKGRS  231 (236)
Q Consensus       190 ~~~~~~a~~~L~~l~~~~~~~~~---i~~~g~~i~~lv~~l~~~~  231 (236)
                      --.+.+++..|..+-.++.+...   ++.....+..+..+|++.+
T Consensus       223 YvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~s  267 (335)
T PF08569_consen  223 YVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKS  267 (335)
T ss_dssp             HHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-
T ss_pred             eEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcc
Confidence            67889999999999988877654   4444433556666776654

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.43  E-value=0.45  Score=45.02  Aligned_cols=82  Identities=20%  Similarity=0.183  Sum_probs=51.6

Q ss_pred             hhhhcccCcHHHHHHhhcCCC--------c--------HHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChh
Q 044293          127 KARFGVAGTVQVLVKAVSAPS--------N--------PAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAE  190 (236)
Q Consensus       127 ~~~i~~~g~i~~Lv~lL~~~~--------~--------~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~  190 (236)
                      |..|.+.|++...+++|...-        +        +....+++.|.-||.++...+.++..+.+|.+-.|=+.....
T Consensus       312 K~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~~lH~LEqvss~~  391 (802)
T PF13764_consen  312 KDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLARGHEPTQLLIAEQLLPLLHRLEQVSSEE  391 (802)
T ss_pred             HHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHhhcCCCcc
Confidence            555678899999998886522        2        244788899999999887777777778886555554443223


Q ss_pred             hHHHHHHHHHHHHcCChh
Q 044293          191 DLAGTSLAVLNLLARFDE  208 (236)
Q Consensus       191 ~~~~~a~~~L~~l~~~~~  208 (236)
                      .+=..|=.+|-.++.+++
T Consensus       392 ~IGslAEnlLeal~~~~~  409 (802)
T PF13764_consen  392 HIGSLAENLLEALAENED  409 (802)
T ss_pred             chHHHHHHHHHHHhcChh
Confidence            333333334444444544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=96.41  E-value=0.28  Score=44.71  Aligned_cols=172  Identities=17%  Similarity=0.138  Sum_probs=107.6

Q ss_pred             CCHHHHHHHHHHHHHHhcCChHHHHHHH---hccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHH
Q 044293           20 DSYEDQQKALQTLASITRVSPQYRSLLA---QTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYR   96 (236)
Q Consensus        20 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~---~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~   96 (236)
                      -.++.+.-|+..|+.+..+...+-..+-   .+ ..+..++..++ .++..+-.++++|.|+-.++.++..+...  ...
T Consensus       556 wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~-~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~  631 (745)
T KOG0301|consen  556 WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQ-NLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--LES  631 (745)
T ss_pred             CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhh-HHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--HHH
Confidence            3455677788888888877554433222   22 45666666665 56777888999999999998888887754  333


Q ss_pred             HHHHH---hccCCHHHHHHHHHHHHHhcccc--hhhhhhcccCcHHHHHHhhcC---C--CcHHHHHHHHHHHHHhcCCC
Q 044293           97 LNWII---QSSSSQETVKLASSLICSLAMLD--KNKARFGVAGTVQVLVKAVSA---P--SNPAGHHLLSSLAELVQFHG  166 (236)
Q Consensus        97 L~~lL---~~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~---~--~~~~~~~a~~aL~~L~~~~~  166 (236)
                      +.+.+   ++..+..++...+....|.+..-  ++.+    .++.+.+...+..   +  +.+.....+.||.+|+..+.
T Consensus       632 i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~  707 (745)
T KOG0301|consen  632 ILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDA  707 (745)
T ss_pred             HhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccH
Confidence            33322   23324556555555555655422  2211    4555666555543   2  22345677788899999998


Q ss_pred             ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHH
Q 044293          167 NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAV  199 (236)
Q Consensus       167 ~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~  199 (236)
                      ...++.+.-.+..+++-++........+..+..
T Consensus       708 ~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~~  740 (745)
T KOG0301|consen  708 SVIQLAKNRSVDSIAKKLKEAVSNPSGKNIARD  740 (745)
T ss_pred             HHHHHHHhcCHHHHHHHHHHhccCchhhHHHHH
Confidence            888888877788888888764333444454444

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.40  E-value=0.05  Score=50.12  Aligned_cols=155  Identities=12%  Similarity=0.119  Sum_probs=104.0

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--ChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRV--SPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP   82 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~--~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~   82 (236)
                      -+.+.+...+..|++.++.++.+|+..+..++.-  ..+--+.+... |.|  |-+.|....|++.-..+.+++.+...-
T Consensus       796 ylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~l-Gvv--LyEylgeeypEvLgsILgAikaI~nvi  872 (1172)
T KOG0213|consen  796 YLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHL-GVV--LYEYLGEEYPEVLGSILGAIKAIVNVI  872 (1172)
T ss_pred             chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHh-hHH--HHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence            3466778888899999999999999999887743  11112334444 544  557788888998877777777665433


Q ss_pred             ch-hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293           83 DL-KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLAE  160 (236)
Q Consensus        83 ~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~  160 (236)
                      .. +..-=-.|.+|.|.-+|++. ...+++++...+..++..........+ --+-=.|+.+|.+.+...+++|..++..
T Consensus       873 gm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~  951 (1172)
T KOG0213|consen  873 GMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGY  951 (1172)
T ss_pred             cccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            22 11111368899999999988 789999999999988875422111111 1222346777777777778877777766


Q ss_pred             Hhc
Q 044293          161 LVQ  163 (236)
Q Consensus       161 L~~  163 (236)
                      ++.
T Consensus       952 Iak  954 (1172)
T KOG0213|consen  952 IAK  954 (1172)
T ss_pred             HHH
Confidence            553

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.37  E-value=0.14  Score=48.23  Aligned_cols=186  Identities=15%  Similarity=0.088  Sum_probs=112.4

Q ss_pred             HHHHhccCcHHHHHhhccCC-----ChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhc---cCC----HHHHH
Q 044293           44 SLLAQTDGAISTLLGLSKSS-----SPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQS---SSS----QETVK  111 (236)
Q Consensus        44 ~~i~~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~---~~~----~~~~~  111 (236)
                      ..+.+. ||+..+++++.+-     ..+.....+.+|..++..+.||+.+.+.|+++.|+..+..   ...    .++.+
T Consensus       111 ~v~~~~-gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E  189 (802)
T PF13764_consen  111 SVLAEC-GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE  189 (802)
T ss_pred             HHhhcC-CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence            345565 9999999998752     3455667788888999999999999999999999998862   112    45666


Q ss_pred             HHHHHHHHhcccchhh-h----hhc--------ccCcHHHHHHhhcCC----CcHHHHHHHHHHHHHhcCCCChHHHHHh
Q 044293          112 LASSLICSLAMLDKNK-A----RFG--------VAGTVQVLVKAVSAP----SNPAGHHLLSSLAELVQFHGNSTLAVRA  174 (236)
Q Consensus       112 ~a~~~L~~Ls~~~~~~-~----~i~--------~~g~i~~Lv~lL~~~----~~~~~~~a~~aL~~L~~~~~~~~~~~~~  174 (236)
                      ....++-.+....... .    ...        ...-+..+++.+.++    ++.+....++.|-+|+.....+...+-.
T Consensus       190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~  269 (802)
T PF13764_consen  190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE  269 (802)
T ss_pred             HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence            6666655544332111 1    001        122367777777654    5677788889999999877665543211


Q ss_pred             CcHHHHHHHhcCC-----ChhhHHHHHHHHHHHHcCCh---hhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293          175 GAVSELIHLIGST-----EAEDLAGTSLAVLNLLARFD---EGMIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       175 g~i~~lv~ll~~~-----~~~~~~~~a~~~L~~l~~~~---~~~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                       -+.+.+++=.-.     ++....+..+.+..++-.+.   .-|..+++.| ++...++.|...-|
T Consensus       270 -~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~G-Iv~~a~~YL~~~~P  333 (802)
T PF13764_consen  270 -HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESG-IVQDAIDYLLKHFP  333 (802)
T ss_pred             -HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhh-HHHHHHHHHHHhCc
Confidence             112222211111     11112233333333343333   4577788876 68888887766544

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=96.37  E-value=0.066  Score=41.27  Aligned_cols=111  Identities=16%  Similarity=0.173  Sum_probs=78.8

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC---------CChHHHHHHHHHHH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS---------SSPIIRTLSLSILL   76 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~---------~~~~~~~~a~~~L~   76 (236)
                      ......+++.+++.....  +.+..|...... ....-+.|.+. ||+..|+.+|..         .+...+..++.++.
T Consensus        65 ~~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~-~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clk  141 (187)
T PF06371_consen   65 KSSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLEL-GGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLK  141 (187)
T ss_dssp             CHHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HH-HHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccC-CCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHH
Confidence            345667788886554332  334444433333 33556778887 999999998853         23467788999999


Q ss_pred             hhCCCCchhHHhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 044293           77 NLSLNPDLKQSLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLA  121 (236)
Q Consensus        77 ~l~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls  121 (236)
                      .+..++.+...+. ..+++..|+..|.+. +..++..++-.|..+|
T Consensus       142 al~n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  142 ALMNTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLALEILAALC  186 (187)
T ss_dssp             HHTSSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence            9999998877776 679999999999988 8999999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.30  E-value=0.028  Score=38.72  Aligned_cols=70  Identities=11%  Similarity=0.137  Sum_probs=52.9

Q ss_pred             cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          133 AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       133 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                      ...+++++..+.+.+.+++..|+.+|++++..-.....-.-...++.|.+++.+.+ +.+ ..++..|.++.
T Consensus        26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d-~~V-r~~a~~Ld~ll   95 (97)
T PF12755_consen   26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD-ENV-RSAAELLDRLL   95 (97)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhH-HHHHHHHHHHh
Confidence            57789999999999999999999999999975443332223577888888888874 555 55667776654

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.20  E-value=0.29  Score=45.49  Aligned_cols=114  Identities=15%  Similarity=0.031  Sum_probs=66.8

Q ss_pred             CchHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293            2 SAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN   81 (236)
Q Consensus         2 ~~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~   81 (236)
                      |+|-+++..|...+++++.++-++.+|+.+...+-...++.-+.      +++..-.+|...++-+.-.++..+..+|..
T Consensus       136 s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~------f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~  209 (866)
T KOG1062|consen  136 SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH------FVIAFRKLLCEKHHGVLIAGLHLITELCKI  209 (866)
T ss_pred             CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH------hhHHHHHHHhhcCCceeeeHHHHHHHHHhc
Confidence            67777888888888888888889999888888887776654332      445555566555554444444444444443


Q ss_pred             -CchhHHhhhcccHHHHHHHHhc----c----------CCHHHHHHHHHHHHHhccc
Q 044293           82 -PDLKQSLASMETIYRLNWIIQS----S----------SSQETVKLASSLICSLAML  123 (236)
Q Consensus        82 -~~~~~~i~~~g~i~~L~~lL~~----~----------~~~~~~~~a~~~L~~Ls~~  123 (236)
                       +++-..+.+  .++.|+..|+.    +          .+|-++.....+|.-|-.+
T Consensus       210 ~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~  264 (866)
T KOG1062|consen  210 SPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN  264 (866)
T ss_pred             CHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC
Confidence             222222222  44455544442    0          1455555555555555443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.16  E-value=0.062  Score=37.03  Aligned_cols=92  Identities=15%  Similarity=0.054  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhcc
Q 044293           25 QQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSS  104 (236)
Q Consensus        25 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~  104 (236)
                      |..++..|...+..-...-....+  -++++++..+..++.++|..|+.+|+|++..-.....-.=....+.|.+++...
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~--~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~   80 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD--EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP   80 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            445666676665442222333333  479999999999999999999999999986543322111245666667776655


Q ss_pred             CCHHHHHHHHHHHHHh
Q 044293          105 SSQETVKLASSLICSL  120 (236)
Q Consensus       105 ~~~~~~~~a~~~L~~L  120 (236)
                       ++.++ +++..|-+|
T Consensus        81 -d~~Vr-~~a~~Ld~l   94 (97)
T PF12755_consen   81 -DENVR-SAAELLDRL   94 (97)
T ss_pred             -chhHH-HHHHHHHHH
Confidence             45544 555665554

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=96.11  E-value=0.74  Score=39.13  Aligned_cols=159  Identities=17%  Similarity=0.090  Sum_probs=109.5

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-CChHHHHHHH-hccCcHHHHHhhccCC-----C--------hHHHHHH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITR-VSPQYRSLLA-QTDGAISTLLGLSKSS-----S--------PIIRTLS   71 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~-~~~g~i~~Lv~lL~~~-----~--------~~~~~~a   71 (236)
                      ++.+..+-..|.++.+.....++..|..+.. .+....+.+. .-+=-.+.|..++...     .        +.+|...
T Consensus        55 ~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~f  134 (330)
T PF11707_consen   55 QNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNF  134 (330)
T ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHH
Confidence            3456667777777777788889999988887 5544444444 3322334566666432     1        1677777


Q ss_pred             HHHHHhhCCC-C-chhHHhh-hcccHHHHHHHHhccCCHHHHHHHHHHHH-Hhcccc----hhhhhhcccCcHHHHHHhh
Q 044293           72 LSILLNLSLN-P-DLKQSLA-SMETIYRLNWIIQSSSSQETVKLASSLIC-SLAMLD----KNKARFGVAGTVQVLVKAV  143 (236)
Q Consensus        72 ~~~L~~l~~~-~-~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~-~Ls~~~----~~~~~i~~~g~i~~Lv~lL  143 (236)
                      +..+..+-.. + ..+..+. +.+.+..+.+-|..+ ++++......+|. +...++    ..|..+.....+..|..+-
T Consensus       135 I~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly  213 (330)
T PF11707_consen  135 IRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLY  213 (330)
T ss_pred             HHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHh
Confidence            7766654333 3 3455555 678899999999887 8999999999988 455444    4566666778899999977


Q ss_pred             cCCCc----HHHHHHHHHHHHHhcCCC
Q 044293          144 SAPSN----PAGHHLLSSLAELVQFHG  166 (236)
Q Consensus       144 ~~~~~----~~~~~a~~aL~~L~~~~~  166 (236)
                      ...++    .+...+-..|..+|.++.
T Consensus       214 ~~~~~~~~~~~~~~vh~fL~~lcT~p~  240 (330)
T PF11707_consen  214 SRDGEDEKSSVADLVHEFLLALCTDPK  240 (330)
T ss_pred             cccCCcccchHHHHHHHHHHHHhcCCC
Confidence            77666    677888888888887654

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.10  E-value=0.17  Score=43.80  Aligned_cols=83  Identities=19%  Similarity=0.174  Sum_probs=71.4

Q ss_pred             CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc-CC---ChHHHHHHHHHHHhhCCCCchhHHhhhcccHHH
Q 044293           21 SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK-SS---SPIIRTLSLSILLNLSLNPDLKQSLASMETIYR   96 (236)
Q Consensus        21 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~---~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~   96 (236)
                      .+.+-..|+..+..+..++|-.-..+.++ |.++.+++-+. .+   +.++....-.++..+|.+..+.+.+.+.+.++.
T Consensus       122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~-Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~  200 (379)
T PF06025_consen  122 GPSVFSLAINIVSDFIHNEPTSFSILQEA-GLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDK  200 (379)
T ss_pred             chHHHHHHHHHHHHHHhcCCchhHHHHHc-CChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHH
Confidence            46777889999999999988888999998 99999999887 43   456666667889999999999999999999999


Q ss_pred             HHHHHhcc
Q 044293           97 LNWIIQSS  104 (236)
Q Consensus        97 L~~lL~~~  104 (236)
                      +++++.+.
T Consensus       201 ~f~if~s~  208 (379)
T PF06025_consen  201 LFEIFTSP  208 (379)
T ss_pred             HHHHhCCH
Confidence            99999865

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.08  E-value=0.092  Score=47.48  Aligned_cols=156  Identities=13%  Similarity=0.114  Sum_probs=105.4

Q ss_pred             hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--ChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293            4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRV--SPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN   81 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~--~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~   81 (236)
                      +.....|...+.+|++..+.++..|+.....++.-  +..--..+.+. |.|  |-+-|....|++.-..+.+++.+-..
T Consensus       600 p~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~kl-g~i--LyE~lge~ypEvLgsil~Ai~~I~sv  676 (975)
T COG5181         600 PHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKL-GNI--LYENLGEDYPEVLGSILKAICSIYSV  676 (975)
T ss_pred             cchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHH-hHH--HHHhcCcccHHHHHHHHHHHHHHhhh
Confidence            34567888999999999999999999988777642  11112344555 544  45667777888887777777776554


Q ss_pred             CchhH-HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHH
Q 044293           82 PDLKQ-SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLA  159 (236)
Q Consensus        82 ~~~~~-~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~  159 (236)
                      -..+. +-=-.|.+|.|.-+|++. ...+..+....+..++.......-..+ --.--.|+.+|.+.|...+++|..++.
T Consensus       677 ~~~~~mqpPi~~ilP~ltPILrnk-h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG  755 (975)
T COG5181         677 HRFRSMQPPISGILPSLTPILRNK-HQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFG  755 (975)
T ss_pred             hcccccCCchhhccccccHhhhhh-hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Confidence            33321 111368999999999987 788888888888887775532211111 122345778888888888888887776


Q ss_pred             HHhc
Q 044293          160 ELVQ  163 (236)
Q Consensus       160 ~L~~  163 (236)
                      .++.
T Consensus       756 ~Is~  759 (975)
T COG5181         756 CISR  759 (975)
T ss_pred             hHHh
Confidence            6554

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.03  E-value=0.58  Score=44.17  Aligned_cols=204  Identities=12%  Similarity=0.050  Sum_probs=129.1

Q ss_pred             HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHh
Q 044293           10 INNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSL   88 (236)
Q Consensus        10 i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i   88 (236)
                      ....+..+. +..+.++..|++++...++.  ..-..+.  ++++..|..+......++......+|+..+..+.....-
T Consensus       492 l~~~v~~l~~~~~~~~ki~a~~~~~~~~~~--~vl~~~~--p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as  567 (1005)
T KOG2274|consen  492 LNATVNALTMDVPPPVKISAVRAFCGYCKV--KVLLSLQ--PMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS  567 (1005)
T ss_pred             HHHHHHhhccCCCCchhHHHHHHHHhccCc--eeccccc--hHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhh
Confidence            333444443 34456777788888777742  2333333  578888888888778888888888999888887776766


Q ss_pred             hhcccHHHHHHHHh-ccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCC----cHHHHHHHHHHHHHhc
Q 044293           89 ASMETIYRLNWIIQ-SSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPS----NPAGHHLLSSLAELVQ  163 (236)
Q Consensus        89 ~~~g~i~~L~~lL~-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~----~~~~~~a~~aL~~L~~  163 (236)
                      .+.-..|.++.++. ..+|+.+...+--++..|+....+...+. .-.||.+++.|+..+    ......++..|..+.+
T Consensus       568 ~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr  646 (1005)
T KOG2274|consen  568 MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLR  646 (1005)
T ss_pred             hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHh
Confidence            67777777777554 33378777778888888888665555543 367999999998765    3445566666665555


Q ss_pred             CC-CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCC
Q 044293          164 FH-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQ  218 (236)
Q Consensus       164 ~~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~  218 (236)
                      .. .---...-.-++|++.+..-++++.+...++=.+|..+.. +.+.-.+-...+|
T Consensus       647 ~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g  703 (1005)
T KOG2274|consen  647 NTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPG  703 (1005)
T ss_pred             cCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCC
Confidence            32 2222223345677777766444334555566666665443 3333333333444

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.00  E-value=0.058  Score=49.61  Aligned_cols=172  Identities=13%  Similarity=0.089  Sum_probs=102.2

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch-h
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL-K   85 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~   85 (236)
                      .....-+...+++.++-+|..++-...++-..   ..+.+... |.++.|-+++...+|.+..+|+.+|..+...+.+ -
T Consensus       120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~-gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~  195 (734)
T KOG1061|consen  120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDS-GLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN  195 (734)
T ss_pred             HHHHHHHHHhccCCChhHHHHHHHHHHHhhcC---Chhhcccc-chhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence            33455666777888899999888888888654   34556676 9999999999988999999999999988665543 1


Q ss_pred             HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC
Q 044293           86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH  165 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~  165 (236)
                      ......-.+..++..+..    ..-+.-+..|-.++..-- +........+..+...|++.+..+.-.+..++.++....
T Consensus       196 ~~~l~~~~~~~lL~al~e----c~EW~qi~IL~~l~~y~p-~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~  270 (734)
T KOG1061|consen  196 LLELNPQLINKLLEALNE----CTEWGQIFILDCLAEYVP-KDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYL  270 (734)
T ss_pred             cccccHHHHHHHHHHHHH----hhhhhHHHHHHHHHhcCC-CCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence            111123334444444432    222333334444443321 111111345556666666666666666666666665543


Q ss_pred             CChHHHHHhCcHHHHHHHhcCC
Q 044293          166 GNSTLAVRAGAVSELIHLIGST  187 (236)
Q Consensus       166 ~~~~~~~~~g~i~~lv~ll~~~  187 (236)
                      ...........-|+++.++...
T Consensus       271 ~~~~~~~~~K~~~pl~tlls~~  292 (734)
T KOG1061|consen  271 KQVNELLFKKVAPPLVTLLSSE  292 (734)
T ss_pred             HHHHHHHHHHhcccceeeeccc
Confidence            3344444445555555555543

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.98  E-value=0.026  Score=40.20  Aligned_cols=79  Identities=14%  Similarity=0.250  Sum_probs=59.0

Q ss_pred             hhhhhhcc--cCcHHHHHHhhcC-CCcHHHHHHHHHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHH
Q 044293          125 KNKARFGV--AGTVQVLVKAVSA-PSNPAGHHLLSSLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVL  200 (236)
Q Consensus       125 ~~~~~i~~--~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L  200 (236)
                      +|...+.+  ...+..|+++|.. .++.+...||.=|+.++. +|.+|..+-+.|+=..++.||.+.+ ++++..|+.++
T Consensus        32 ENa~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d-~eVr~eAL~av  110 (119)
T PF11698_consen   32 ENADKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHED-PEVRYEALLAV  110 (119)
T ss_dssp             HHSGGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SS-HHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCC-HHHHHHHHHHH
Confidence            45555554  5678999999954 455667778888999998 4566666667899999999999985 89999999988


Q ss_pred             HHHc
Q 044293          201 NLLA  204 (236)
Q Consensus       201 ~~l~  204 (236)
                      .-+.
T Consensus       111 Qklm  114 (119)
T PF11698_consen  111 QKLM  114 (119)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.98  E-value=0.12  Score=47.61  Aligned_cols=150  Identities=7%  Similarity=0.040  Sum_probs=97.8

Q ss_pred             HHHhHHHHHHHHhcC--CC-----HHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHh
Q 044293            5 RVRETINNCVSRSQS--DS-----YEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLN   77 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~--~~-----~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~   77 (236)
                      +++..+|.|++.|-.  ++     ...-..|..+|.-++.-   .+..|..+  ++|.+-.-+++++-+.++.++-+...
T Consensus       316 a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~~--Vl~Fiee~i~~pdwr~reaavmAFGS  390 (859)
T KOG1241|consen  316 ALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIVPH--VLPFIEENIQNPDWRNREAAVMAFGS  390 (859)
T ss_pred             HHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccchhh--hHHHHHHhcCCcchhhhhHHHHHHHh
Confidence            456789999999932  22     22344455555555432   22233322  44444445677777778888877776


Q ss_pred             hCCCCc-hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhc----ccCcHHHHHHhhcCCCcHHHH
Q 044293           78 LSLNPD-LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG----VAGTVQVLVKAVSAPSNPAGH  152 (236)
Q Consensus        78 l~~~~~-~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~----~~g~i~~Lv~lL~~~~~~~~~  152 (236)
                      +-..++ .+..-...+++|.++.++... +.-++..++|++..++..--  ..+.    -.+.++.++.=|. +.|++..
T Consensus       391 Il~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~--e~~~n~~~l~~~l~~l~~gL~-DePrva~  466 (859)
T KOG1241|consen  391 ILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLP--EAIINQELLQSKLSALLEGLN-DEPRVAS  466 (859)
T ss_pred             hhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhch--hhcccHhhhhHHHHHHHHHhh-hCchHHH
Confidence            655554 455555688999999999866 78888999999999887542  2222    2455555555553 4578889


Q ss_pred             HHHHHHHHHhc
Q 044293          153 HLLSSLAELVQ  163 (236)
Q Consensus       153 ~a~~aL~~L~~  163 (236)
                      +++|++.+|+.
T Consensus       467 N~CWAf~~Lae  477 (859)
T KOG1241|consen  467 NVCWAFISLAE  477 (859)
T ss_pred             HHHHHHHHHHH
Confidence            99999999983

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.90  E-value=0.54  Score=42.12  Aligned_cols=154  Identities=12%  Similarity=0.134  Sum_probs=109.0

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCCh----HHHHHHHHHHHhhCCCCc
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSP----IIRTLSLSILLNLSLNPD   83 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~----~~~~~a~~~L~~l~~~~~   83 (236)
                      .....+...+.+++...+..+++.|..++.+ ....+.|... +++..|..++.+++.    +....++.+...+-.+.-
T Consensus        83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~-~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv  160 (713)
T KOG2999|consen   83 HYAKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRC-SGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV  160 (713)
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhc-chHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce
Confidence            3566788888888888888899999999987 6677888887 899999999987754    445555566655544433


Q ss_pred             hhHHhhhcccHHHHHHHHhccC-CHHHHHHHHHHHHHhcccch-hhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293           84 LKQSLASMETIYRLNWIIQSSS-SQETVKLASSLICSLAMLDK-NKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL  161 (236)
Q Consensus        84 ~~~~i~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L  161 (236)
                      .-.......+|-....+.+-.. +..+...|...|-++...+. ....+.+.--++.|+.+++..+.+....|...+..+
T Consensus       161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal  240 (713)
T KOG2999|consen  161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL  240 (713)
T ss_pred             eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            3333334455555555553221 45667778888888877665 455556678899999999998888777776666655


Q ss_pred             hc
Q 044293          162 VQ  163 (236)
Q Consensus       162 ~~  163 (236)
                      -.
T Consensus       241 ~~  242 (713)
T KOG2999|consen  241 FR  242 (713)
T ss_pred             Hh
Confidence            54

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.80  E-value=0.93  Score=41.92  Aligned_cols=126  Identities=15%  Similarity=0.190  Sum_probs=88.0

Q ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-Cch
Q 044293            6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDL   84 (236)
Q Consensus         6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~   84 (236)
                      .|+.-+.++.+|.++-+=+|.+|+-.+..+...+++.   +.   ..+|.|++-|..+||.++..|..+++.||.. |.|
T Consensus       142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---lr---~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn  215 (877)
T KOG1059|consen  142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---LR---PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN  215 (877)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---Hh---hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence            3677788899999888889999999999988765543   33   5699999999999999999999999999985 455


Q ss_pred             hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC
Q 044293           85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP  146 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~  146 (236)
                      -..     .-|.+.++|.++++-=+.........+|+-.+   ..++ ...+++|..++.+.
T Consensus       216 yL~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplE---PRLg-KKLieplt~li~sT  268 (877)
T KOG1059|consen  216 YLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE---PRLG-KKLIEPITELMEST  268 (877)
T ss_pred             ccc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccC---chhh-hhhhhHHHHHHHhh
Confidence            332     33566666665533334444444444554432   1222 34567777777654

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=95.79  E-value=0.64  Score=39.30  Aligned_cols=136  Identities=19%  Similarity=0.191  Sum_probs=92.4

Q ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc-CCChHHHHHHHHHHHhhCCCC--
Q 044293            6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK-SSSPIIRTLSLSILLNLSLNP--   82 (236)
Q Consensus         6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~--   82 (236)
                      -.+.++.+...+.+.++.+|..|+.+|..+-.            +-.++.|+.++. +.+..++..++.+|..+-...  
T Consensus        72 ~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~------------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~  139 (335)
T COG1413          72 SEEAVPLLRELLSDEDPRVRDAAADALGELGD------------PEAVPPLVELLENDENEGVRAAAARALGKLGDERAL  139 (335)
T ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC------------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhh
Confidence            35678888999988888888888775555421            135777777777 467777777777777653211  


Q ss_pred             ----------c--------------hhHH-------hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhc
Q 044293           83 ----------D--------------LKQS-------LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG  131 (236)
Q Consensus        83 ----------~--------------~~~~-------i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~  131 (236)
                                .              .|..       +.....++.+...+... +..++..|+.+|..+....       
T Consensus       140 ~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~~-------  211 (335)
T COG1413         140 DPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDE-DADVRRAAASALGQLGSEN-------  211 (335)
T ss_pred             HHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcch-------
Confidence                      1              1221       11334677777777776 6778888888888776654       


Q ss_pred             ccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293          132 VAGTVQVLVKAVSAPSNPAGHHLLSSLAELV  162 (236)
Q Consensus       132 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~  162 (236)
                       ..+.+.+...+...+..++..++.+|..+-
T Consensus       212 -~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~  241 (335)
T COG1413         212 -VEAADLLVKALSDESLEVRKAALLALGEIG  241 (335)
T ss_pred             -hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence             356678888888888888877777775543

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=95.75  E-value=0.13  Score=47.55  Aligned_cols=131  Identities=15%  Similarity=0.171  Sum_probs=89.9

Q ss_pred             cHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhh---hhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC-CCh
Q 044293           93 TIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKA---RFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH-GNS  168 (236)
Q Consensus        93 ~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~---~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~  168 (236)
                      .++.+++.|++. +++++++|+.++..++..-.++.   .++..|.  .|...|....+++.-..+.|+..++... ..+
T Consensus       800 i~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~k  876 (1172)
T KOG0213|consen  800 ICSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK  876 (1172)
T ss_pred             HHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence            466777888888 89999999999998876654443   3344554  4678888888888877777776665422 111


Q ss_pred             HHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-Ch---hhHHHHHhcCCcHHHHHHHhhCCc
Q 044293          169 TLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FD---EGMIALTKTDQIVSLMVDVLKGRS  231 (236)
Q Consensus       169 ~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~---~~~~~i~~~g~~i~~lv~~l~~~~  231 (236)
                      ..==-.|.+|.|..+|++. ++.++++|+..+.-+|. .+   ..|+.++-+=    .|+++|+.++
T Consensus       877 m~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRIcf----eLlelLkahk  938 (1172)
T KOG0213|consen  877 MTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRICF----ELLELLKAHK  938 (1172)
T ss_pred             cCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHH----HHHHHHHHHH
Confidence            1111247789999999887 57899999999998884 34   3677776543    3455555443

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=95.73  E-value=0.97  Score=40.98  Aligned_cols=122  Identities=19%  Similarity=0.205  Sum_probs=75.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-chhHHhhhcccHHHHH
Q 044293           20 DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DLKQSLASMETIYRLN   98 (236)
Q Consensus        20 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~i~~L~   98 (236)
                      ++..+.+-|+..|..+..+=|+..+      .+|..+++|....+..+|..|+..|-.+|.+. +....+     ...|+
T Consensus        34 g~~k~K~Laaq~I~kffk~FP~l~~------~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~  102 (556)
T PF05918_consen   34 GSPKEKRLAAQFIPKFFKHFPDLQE------EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLV  102 (556)
T ss_dssp             S-HHHHHHHHHHHHHHHCC-GGGHH------HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHH
Confidence            5666777788888888776555432      46788888888888899999999999988874 344444     45788


Q ss_pred             HHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhc---CCCcHHHHHHHHHHHH
Q 044293           99 WIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVS---APSNPAGHHLLSSLAE  160 (236)
Q Consensus        99 ~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~a~~aL~~  160 (236)
                      ++|+++ ++.-...+-.+|..|-..+.       .+.+..+...+.   +++..+++.++..|..
T Consensus       103 QlL~td-d~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~  159 (556)
T PF05918_consen  103 QLLQTD-DPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLRE  159 (556)
T ss_dssp             HHTT----HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred             HHHhcc-cHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence            899877 55545455555554433331       355666666665   4566778888877743

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.72  E-value=0.67  Score=38.72  Aligned_cols=170  Identities=18%  Similarity=0.149  Sum_probs=110.3

Q ss_pred             CcHHHHH-hhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhh--
Q 044293           51 GAISTLL-GLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNK--  127 (236)
Q Consensus        51 g~i~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~--  127 (236)
                      +.+..|+ .-+++.++.+|+.++.+|+-+|..+..   ++ ...++.+...++.+ +.+++..|+.+++-+....+..  
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~a-~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---LA-KEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---HH-HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhc
Confidence            4455555 557788999999999999988887652   22 23467788888777 8999999999999776543211  


Q ss_pred             h-------hhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCC--ChhhHHHHHHH
Q 044293          128 A-------RFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGST--EAEDLAGTSLA  198 (236)
Q Consensus       128 ~-------~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~--~~~~~~~~a~~  198 (236)
                      .       .......+..+.+.+.+.++.++..++..++.|-.+.....   ...++..|+-+.-++  .+..-..+++.
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~  177 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS  177 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence            1       12225678888888988888999999999988876554433   223344444444332  11123466666


Q ss_pred             HHH-HHcC-ChhhHHHHHhcCCcHHHHHHHhhCC
Q 044293          199 VLN-LLAR-FDEGMIALTKTDQIVSLMVDVLKGR  230 (236)
Q Consensus       199 ~L~-~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~  230 (236)
                      ... ..+. ++++++.+.+ . .++.+-.+.+..
T Consensus       178 ~Ffp~y~~s~~~~Q~~l~~-~-f~~~l~~~~~~~  209 (298)
T PF12719_consen  178 VFFPVYASSSPENQERLAE-A-FLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHcCCHHHHHHHHH-H-HHHHHHHHHhCc
Confidence            655 3454 4556655554 3 367777766653

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.71  E-value=0.67  Score=41.57  Aligned_cols=161  Identities=17%  Similarity=0.151  Sum_probs=114.2

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccC---CHHHHHHHHHHHHHhcccchhhhhh
Q 044293           54 STLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS---SQETVKLASSLICSLAMLDKNKARF  130 (236)
Q Consensus        54 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~---~~~~~~~a~~~L~~Ls~~~~~~~~i  130 (236)
                      ..+...+.+++...+-.+..-|..++.++..-..+++..++..|.+++.+++   +.++...+..+...+-.........
T Consensus        86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~  165 (713)
T KOG2999|consen   86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES  165 (713)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence            4566677777777777788888899999988889999999999999999884   2356666666666666555444444


Q ss_pred             cccCcHHHHHHhhcCC--CcHHHHHHHHHHHHHhcCCC-ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-C
Q 044293          131 GVAGTVQVLVKAVSAP--SNPAGHHLLSSLAELVQFHG-NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-F  206 (236)
Q Consensus       131 ~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~~-~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~  206 (236)
                      ....+|-....+....  +..+...|+..|-++..... .+..+.+.--+..++..+..++ ..++..|+..+..+.. .
T Consensus       166 ~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n-~~i~~~aial~nal~~~a  244 (713)
T KOG2999|consen  166 VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSN-QRIQTCAIALLNALFRKA  244 (713)
T ss_pred             cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcc-hHHHHHHHHHHHHHHhhC
Confidence            4456666666666432  23456778888888877655 5556667778999999999885 6777778888877653 3


Q ss_pred             h-hhHHHHHh
Q 044293          207 D-EGMIALTK  215 (236)
Q Consensus       207 ~-~~~~~i~~  215 (236)
                      + +-|..+.+
T Consensus       245 ~~~~R~~~~~  254 (713)
T KOG2999|consen  245 PDDKRFEMAK  254 (713)
T ss_pred             ChHHHHHHHH
Confidence            3 44555443

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.61  E-value=0.42  Score=44.03  Aligned_cols=166  Identities=13%  Similarity=0.109  Sum_probs=102.2

Q ss_pred             HHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc
Q 044293           53 ISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV  132 (236)
Q Consensus        53 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~  132 (236)
                      +..|-++|++....+|-.++.-++.|+..+.....+...  ...++..|+...|..+++.|.-.|..+|.... ..+|  
T Consensus       331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~N-ak~I--  405 (938)
T KOG1077|consen  331 VNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN-AKQI--  405 (938)
T ss_pred             HHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhh-HHHH--
Confidence            444445555555555555556666565555444445444  67778888866688999999999999998664 4443  


Q ss_pred             cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC----CCCh----HHHHH-h------CcHHHHHHHhcCCChhhHHHHHH
Q 044293          133 AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF----HGNS----TLAVR-A------GAVSELIHLIGSTEAEDLAGTSL  197 (236)
Q Consensus       133 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~----~~~~----~~~~~-~------g~i~~lv~ll~~~~~~~~~~~a~  197 (236)
                         +.-|+++|.+.++..++.-..=.+-|+..    ....    -++++ +      ++--.+++..-.  .++++..|+
T Consensus       406 ---V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvN--nedlq~yaa  480 (938)
T KOG1077|consen  406 ---VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVN--NEDLQGYAA  480 (938)
T ss_pred             ---HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEec--chhhhHHHH
Confidence               45677788777766665544333444431    1111    11111 2      233344554443  357889999


Q ss_pred             HHHHHHcCChhhHHHHHhcCC-cHHHHHHHhh
Q 044293          198 AVLNLLARFDEGMIALTKTDQ-IVSLMVDVLK  228 (236)
Q Consensus       198 ~~L~~l~~~~~~~~~i~~~g~-~i~~lv~~l~  228 (236)
                      ..+......+.+-+.|++.|| +...+-.++.
T Consensus       481 k~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa  512 (938)
T KOG1077|consen  481 KRLFEYLQKPACHENMVKVGGYILGEFGNLIA  512 (938)
T ss_pred             HHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhc
Confidence            999988888999999999887 3333334443

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.61  E-value=0.034  Score=29.53  Aligned_cols=29  Identities=21%  Similarity=0.130  Sum_probs=25.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 044293            9 TINNCVSRSQSDSYEDQQKALQTLASITR   37 (236)
Q Consensus         9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~   37 (236)
                      .+|.+++.++++++++|..|+.+|..++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            37899999999999999999999998875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=95.59  E-value=0.23  Score=43.62  Aligned_cols=114  Identities=15%  Similarity=0.059  Sum_probs=86.2

Q ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChH-------------HHHHHHhccCcHHHHHhhccCCChHHHHHHH
Q 044293            6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQ-------------YRSLLAQTDGAISTLLGLSKSSSPIIRTLSL   72 (236)
Q Consensus         6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~-------------~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~   72 (236)
                      ..+.+..|+++|.+  ++....+++.+..+..+.++             +|+.|..  -.+|.|++..+..+.+.+.+-+
T Consensus       269 ~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~~~~~k~~yL  344 (415)
T PF12460_consen  269 ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEADDEIKSNYL  344 (415)
T ss_pred             HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhcChhhHHHHH
Confidence            35677888888866  55677788888888776332             3666765  4899999998887777788888


Q ss_pred             HHHHhhCCCCchhHHhhh-cccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc
Q 044293           73 SILLNLSLNPDLKQSLAS-METIYRLNWIIQSSSSQETVKLASSLICSLAMLD  124 (236)
Q Consensus        73 ~~L~~l~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~  124 (236)
                      .+|.++-.+-......-+ ...+|.+++-|... +.+++..+..+|..+..+.
T Consensus       345 ~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  345 TALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcC
Confidence            888887776443222323 46999999999888 8899999999999887765

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.57  E-value=0.024  Score=30.13  Aligned_cols=30  Identities=13%  Similarity=0.298  Sum_probs=26.0

Q ss_pred             cHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293          135 TVQVLVKAVSAPSNPAGHHLLSSLAELVQF  164 (236)
Q Consensus       135 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~  164 (236)
                      .+|.+++++.++++.++..|+.+|..++.+
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            378999999999999999999999998753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.54  E-value=0.053  Score=35.18  Aligned_cols=67  Identities=10%  Similarity=0.024  Sum_probs=57.7

Q ss_pred             HHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccC
Q 044293           68 RTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAG  134 (236)
Q Consensus        68 ~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g  134 (236)
                      .+.+++++.|++..+.+-..+.+.+.++.++++.++.....+|-.|.-+|.-++...+..+.+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            4678999999999999988888899999999999977578899999999999999888777766544

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=95.53  E-value=0.35  Score=45.91  Aligned_cols=212  Identities=14%  Similarity=0.149  Sum_probs=118.7

Q ss_pred             HhHHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc-
Q 044293            7 RETINNCVSRSQS--DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD-   83 (236)
Q Consensus         7 ~~~i~~lv~~L~~--~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-   83 (236)
                      ......|++-+++  .+..++.-|+-.+..+...-+..-    .. +.-..+++-+++++.+++..|.-||.+++...- 
T Consensus       816 ~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~----~~-e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~  890 (1233)
T KOG1824|consen  816 KSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP----QN-ELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP  890 (1233)
T ss_pred             hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc----ch-hhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH
Confidence            3455566666653  344556667667777665522110    11 334455566777777777777777777766221 


Q ss_pred             -hhHH----hhh------------------------cccHHHHHHHHhc-cC--CHHHHHHHHHHHHHhcccchhhhhhc
Q 044293           84 -LKQS----LAS------------------------METIYRLNWIIQS-SS--SQETVKLASSLICSLAMLDKNKARFG  131 (236)
Q Consensus        84 -~~~~----i~~------------------------~g~i~~L~~lL~~-~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~  131 (236)
                       .-+.    |..                        ...++.++.+|.. .+  .+.+|--.+.+|..|+..+-      
T Consensus       891 ~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep------  964 (1233)
T KOG1824|consen  891 KYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP------  964 (1233)
T ss_pred             hHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh------
Confidence             1111    110                        1122233332221 00  12233334444444433221      


Q ss_pred             ccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHH
Q 044293          132 VAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMI  211 (236)
Q Consensus       132 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  211 (236)
                       ...+|.|-..+.++.+..+..+++++...-..+...-.......|.-++.+++++| .+++..|+.++...+++.-   
T Consensus       965 -esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpD-l~VrrvaLvv~nSaahNKp--- 1039 (1233)
T KOG1824|consen  965 -ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPD-LEVRRVALVVLNSAAHNKP--- 1039 (1233)
T ss_pred             -HHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHHHccCH---
Confidence             45678888888888877777777777554444433333344556778899999985 8899999999988776532   


Q ss_pred             HHHhcCCcHHHHHHHhhCCcccccC
Q 044293          212 ALTKTDQIVSLMVDVLKGRSMFSKE  236 (236)
Q Consensus       212 ~i~~~g~~i~~lv~~l~~~~~~~k~  236 (236)
                      .++. + +.|.++..+-+.++..||
T Consensus      1040 slIr-D-llpeLLp~Ly~eTkvrke 1062 (1233)
T KOG1824|consen 1040 SLIR-D-LLPELLPLLYSETKVRKE 1062 (1233)
T ss_pred             hHHH-H-HHHHHHHHHHHhhhhhHh
Confidence            2222 2 456666666666655554

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.51  E-value=1.1  Score=41.96  Aligned_cols=153  Identities=15%  Similarity=0.154  Sum_probs=98.8

Q ss_pred             chHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC--
Q 044293            3 APRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL--   80 (236)
Q Consensus         3 ~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--   80 (236)
                      +-+++++-..+++.|+++|..++++|++.+..+...  .|-+.      .+..|+.+|.+.+++++...+.-+..++.  
T Consensus       345 ~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~--~Nv~~------mv~eLl~fL~~~d~~~k~~~as~I~~laEkf  416 (866)
T KOG1062|consen  345 PTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE--SNVRV------MVKELLEFLESSDEDFKADIASKIAELAEKF  416 (866)
T ss_pred             cHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc--ccHHH------HHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence            345678888999999999999999999999999875  45443      45567788877788888877777766644  


Q ss_pred             CCchhHH-------------hhhcccHHHHHHHHhcc-C-----------------------CHHHHHHHHHHHHHhc--
Q 044293           81 NPDLKQS-------------LASMETIYRLNWIIQSS-S-----------------------SQETVKLASSLICSLA--  121 (236)
Q Consensus        81 ~~~~~~~-------------i~~~g~i~~L~~lL~~~-~-----------------------~~~~~~~a~~~L~~Ls--  121 (236)
                      .|+++..             ++..+.+..++.++.++ .                       .+....-|.|+|..=.  
T Consensus       417 aP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdl  496 (866)
T KOG1062|consen  417 APDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDL  496 (866)
T ss_pred             CCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHH
Confidence            3555543             23456777777777665 0                       1122233444444211  


Q ss_pred             -ccchh---hhhhcccCcHHHHHHhhcCC--CcHHHHHHHHHHHHHhc
Q 044293          122 -MLDKN---KARFGVAGTVQVLVKAVSAP--SNPAGHHLLSSLAELVQ  163 (236)
Q Consensus       122 -~~~~~---~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~  163 (236)
                       .+..+   -..+.+..++..|-+++.+.  +..++.+++.||..|+.
T Consensus       497 ll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSs  544 (866)
T KOG1062|consen  497 LLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSS  544 (866)
T ss_pred             hhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence             11111   11222356677777777653  34567889999988886

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.41  E-value=0.2  Score=41.55  Aligned_cols=145  Identities=10%  Similarity=0.126  Sum_probs=102.9

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      +..+...+..|.+.+++..+.++..|+.|+..+++......+  -+|..+++-+++....+.+.|+.++..+...-++..
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~--~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i  164 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH--EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI  164 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888899999999999999999999887776666654  478888998988888888888888887765433322


Q ss_pred             HhhhcccHHHHH-HHHhccC--CHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293           87 SLASMETIYRLN-WIIQSSS--SQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus        87 ~i~~~g~i~~L~-~lL~~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~  163 (236)
                      .-    .+..++ .++....  +.-+++.|-.+|..+...-..      .-+++.|+..++..++.++..++.+..+...
T Consensus       165 ~~----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~  234 (334)
T KOG2933|consen  165 DQ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCVI  234 (334)
T ss_pred             HH----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccccce
Confidence            21    233333 3443331  345788888888888776542      2346777777888888888877776655443

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.28  E-value=0.74  Score=42.97  Aligned_cols=170  Identities=11%  Similarity=0.096  Sum_probs=111.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhh
Q 044293           11 NNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLAS   90 (236)
Q Consensus        11 ~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~   90 (236)
                      ..|..+|.++......+|.+.|..+...+.+     + . ..+|..|+-..+.+.++++..---|..-|...++-..+  
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d-----v-S-~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--  108 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD-----V-S-LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--  108 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhcCCc-----H-H-HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--
Confidence            4688999888888888898887766655443     2 2 57888888888999999887766666666655553333  


Q ss_pred             cccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-CCCChH
Q 044293           91 METIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ-FHGNST  169 (236)
Q Consensus        91 ~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~~~~  169 (236)
                        -|..+-+-|+.. ++.+|..|.++|..+      |..+...=.+-++-+...+.++.+++.|+.|+-.|=+ .++.+.
T Consensus       109 --SIntfQk~L~Dp-N~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~  179 (968)
T KOG1060|consen  109 --SINTFQKALKDP-NQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD  179 (968)
T ss_pred             --eHHHHHhhhcCC-cHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence              467788888888 899998877776543      2232222223334455567788999999999977765 445555


Q ss_pred             HHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          170 LAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       170 ~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                      ++.     ..+=.||.+.+ +.+.-.|+.+...+|
T Consensus       180 qL~-----e~I~~LLaD~s-plVvgsAv~AF~evC  208 (968)
T KOG1060|consen  180 QLE-----EVIKKLLADRS-PLVVGSAVMAFEEVC  208 (968)
T ss_pred             HHH-----HHHHHHhcCCC-CcchhHHHHHHHHhc
Confidence            443     34444555543 444455555544433

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.22  E-value=0.12  Score=39.82  Aligned_cols=78  Identities=12%  Similarity=0.077  Sum_probs=62.9

Q ss_pred             hHHhhhcccHHHHHHHHhcc--------CCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHH
Q 044293           85 KQSLASMETIYRLNWIIQSS--------SSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLL  155 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~--------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~  155 (236)
                      -..+++.||+..|+.+|..-        .+.+....+..+|..+.........+.. .+++..|+..|.+.+..++..++
T Consensus       100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l  179 (187)
T PF06371_consen  100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL  179 (187)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred             HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence            56777899999999998742        2457778899999999888876666665 89999999999999999999999


Q ss_pred             HHHHHHh
Q 044293          156 SSLAELV  162 (236)
Q Consensus       156 ~aL~~L~  162 (236)
                      ..|..+|
T Consensus       180 eiL~~lc  186 (187)
T PF06371_consen  180 EILAALC  186 (187)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.09  E-value=0.074  Score=42.19  Aligned_cols=147  Identities=16%  Similarity=0.085  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-----ChHHHHHHHHHHHhhCCCCch--hHHhhhcccHH
Q 044293           23 EDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-----SPIIRTLSLSILLNLSLNPDL--KQSLASMETIY   95 (236)
Q Consensus        23 ~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~l~~~~~~--~~~i~~~g~i~   95 (236)
                      ...+.|+..|+.++.+ ++.|..|.++ -+--.+-.+|...     .+-.|-.+++++..+.++++-  ...+.....+|
T Consensus       115 nRvcnaL~lLQclaSh-Petk~~Fl~A-hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivP  192 (315)
T COG5209         115 NRVCNALNLLQCLASH-PETKKVFLDA-HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVP  192 (315)
T ss_pred             hHHHHHHHHHHHHhcC-cchheeeeec-ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHH
Confidence            3456788888888886 8889888876 4333333555432     234577788999998887643  44455788999


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhh----cc----cCcHHHHHHh-hcCCCcHHHHHHHHHHHHHhcCCC
Q 044293           96 RLNWIIQSSSSQETVKLASSLICSLAMLDKNKARF----GV----AGTVQVLVKA-VSAPSNPAGHHLLSSLAELVQFHG  166 (236)
Q Consensus        96 ~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i----~~----~g~i~~Lv~l-L~~~~~~~~~~a~~aL~~L~~~~~  166 (236)
                      ..++++..+ ++-.+.-|+-++..+-.++..-.-+    .+    +..+.-++.. ...++.+..++++++-..||..+.
T Consensus       193 LcLrIme~g-SElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~  271 (315)
T COG5209         193 LCLRIMELG-SELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPH  271 (315)
T ss_pred             HHHHHHHhh-hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHh
Confidence            999999998 5666666776666666665443332    22    2333333332 234677888999999888888887


Q ss_pred             ChHHHH
Q 044293          167 NSTLAV  172 (236)
Q Consensus       167 ~~~~~~  172 (236)
                      .|..+.
T Consensus       272 aR~lL~  277 (315)
T COG5209         272 ARALLS  277 (315)
T ss_pred             HHHHHh
Confidence            776653

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.02  E-value=0.19  Score=46.52  Aligned_cols=155  Identities=17%  Similarity=0.261  Sum_probs=110.1

Q ss_pred             HHHhHHHHHHHHhcCCCHH-HHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293            5 RVRETINNCVSRSQSDSYE-DQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD   83 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~-~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~   83 (236)
                      +..+.++.+.+.+...... ..-+++.++.+|+..+...|+.+.+. -+++.+-.++...++..|..++..+.||..++.
T Consensus       538 ~~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke-~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~  616 (748)
T KOG4151|consen  538 RSYEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKE-KALGKIEELMTEENPALQRAALESIINLLWSPL  616 (748)
T ss_pred             chhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHH-hcchhhHHHhhcccHHHHHHHHHHHHHHHhhHH
Confidence            3455566665555433322 23468999999999888888888887 788888888888899999999999999999987


Q ss_pred             h-hHHhhh-cccHHHHHHHHhccCCHHHHHHHHHHHHHhcc-cchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHH
Q 044293           84 L-KQSLAS-METIYRLNWIIQSSSSQETVKLASSLICSLAM-LDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLA  159 (236)
Q Consensus        84 ~-~~~i~~-~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~  159 (236)
                      . ...+++ ...++.....+... +......+++++.-++. +...+..+.+ ..+...++.++.++++.++...+....
T Consensus       617 ~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~l  695 (748)
T KOG4151|consen  617 LYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIIL  695 (748)
T ss_pred             HHHHHhhccccCchHHHHHHHhh-hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhh
Confidence            5 555665 56776666666654 56666667777664433 3333442333 677899999999998888777776666


Q ss_pred             HH
Q 044293          160 EL  161 (236)
Q Consensus       160 ~L  161 (236)
                      |+
T Consensus       696 n~  697 (748)
T KOG4151|consen  696 NL  697 (748)
T ss_pred             hH
Confidence            53

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=94.93  E-value=0.24  Score=39.40  Aligned_cols=146  Identities=12%  Similarity=0.041  Sum_probs=97.4

Q ss_pred             HHHHHHHHhhCCCCchhHHhhhcccH---HHHHHHHhccC-CHHHHHHHHHHHHHhcccch--hhhhhcccCcHHHHHHh
Q 044293           69 TLSLSILLNLSLNPDLKQSLASMETI---YRLNWIIQSSS-SQETVKLASSLICSLAMLDK--NKARFGVAGTVQVLVKA  142 (236)
Q Consensus        69 ~~a~~~L~~l~~~~~~~~~i~~~g~i---~~L~~lL~~~~-~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~l  142 (236)
                      -+|+.+|..++.+|+.|..+.+...-   -+++....+.+ -+-.+..+.+++..|..+++  .-..+.....+|.++++
T Consensus       118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI  197 (315)
T COG5209         118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI  197 (315)
T ss_pred             HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence            46777777899999999988876533   33333333322 23466789999999988774  33444568999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHhcCCCChHHHHH----h----CcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHH
Q 044293          143 VSAPSNPAGHHLLSSLAELVQFHGNSTLAVR----A----GAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALT  214 (236)
Q Consensus       143 L~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~----~----g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~  214 (236)
                      +..++..-+.-|+-.+..+-.++.+-+.+++    .    .++..++.-+-+.....+.+.++++-..|+.++..|..+.
T Consensus       198 me~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL~  277 (315)
T COG5209         198 MELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALLS  277 (315)
T ss_pred             HHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHHh
Confidence            9998866666666556555555555444433    2    2334444444332235678999999999999998888765

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.91  E-value=1.7  Score=42.34  Aligned_cols=178  Identities=15%  Similarity=0.131  Sum_probs=102.3

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC-----CCch-hHHhhh
Q 044293           18 QSDSYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL-----NPDL-KQSLAS   90 (236)
Q Consensus        18 ~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-----~~~~-~~~i~~   90 (236)
                      ++.+...+...+.+|..+-... .++...+.+.   ||.++-++...+...+..+..+|..+..     ++.+ +    .
T Consensus       707 qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~---I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~----~  779 (1176)
T KOG1248|consen  707 QSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKL---IPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP----A  779 (1176)
T ss_pred             hccchHHHHHHHHHHHHHHHhccHHHHHHHHHH---HHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc----h
Confidence            3444556666666666655443 3555555543   5555555577788888888888887763     1111 2    1


Q ss_pred             cccHHHHHHHHhccC-CHHHHHHHHHHHHHhcccc-hhhhhhcc---cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-C
Q 044293           91 METIYRLNWIIQSSS-SQETVKLASSLICSLAMLD-KNKARFGV---AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ-F  164 (236)
Q Consensus        91 ~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~Ls~~~-~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~  164 (236)
                      ...|..++..+..+. ..+.+..+.. |..+...- +.+..+.+   .+.+..+...|.+.++.+.+.|+..+..++. .
T Consensus       780 ~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~  858 (1176)
T KOG1248|consen  780 SAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF  858 (1176)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC
Confidence            225666666666541 1233333333 33332221 32333322   4555555566677888999999999988886 4


Q ss_pred             CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          165 HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       165 ~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                      ++.+-.-...-.+|.+..+.++.. ..++...-..|.-|.
T Consensus       859 pe~~l~~~~~~LL~sll~ls~d~k-~~~r~Kvr~LlekLi  897 (1176)
T KOG1248|consen  859 PEECLSPHLEELLPSLLALSHDHK-IKVRKKVRLLLEKLI  897 (1176)
T ss_pred             CHHHHhhhHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHH
Confidence            565655555667888888777652 444444444444444

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.82  E-value=0.77  Score=42.84  Aligned_cols=174  Identities=14%  Similarity=0.152  Sum_probs=102.2

Q ss_pred             hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293            4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD   83 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~   83 (236)
                      +|.+-.++..-.+|++.++.+...++.+.+.++-.+   +    .. .+++.|+.+|++ ++++|.-.+..+..++....
T Consensus       283 ~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~---~----~~-~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~  353 (968)
T KOG1060|consen  283 PDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN---Q----VT-KIAKALVRLLRS-NREVQYVVLQNIATISIKRP  353 (968)
T ss_pred             ccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH---H----HH-HHHHHHHHHHhc-CCcchhhhHHHHHHHHhcch
Confidence            355666777777888999999999999999998642   1    12 678999999977 44666666666666554322


Q ss_pred             hhHHhhhcccHHHHHHH--HhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293           84 LKQSLASMETIYRLNWI--IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL  161 (236)
Q Consensus        84 ~~~~i~~~g~i~~L~~l--L~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L  161 (236)
                              +.-.+-++-  +.+.+...++..-...|.+|+.......      .++.+-.++++.+......|+.+|+.+
T Consensus       354 --------~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~------ILrE~q~YI~s~d~~faa~aV~AiGrC  419 (968)
T KOG1060|consen  354 --------TLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISE------ILRELQTYIKSSDRSFAAAAVKAIGRC  419 (968)
T ss_pred             --------hhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHH------HHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence                    222222221  1122134455556666666665443222      245566666666555666666777666


Q ss_pred             hcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293          162 VQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       162 ~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~  205 (236)
                      +..-..    +..-++..|+.++++.+ ..+...++.++.-|..
T Consensus       420 A~~~~s----v~~tCL~gLv~Llsshd-e~Vv~eaV~vIk~Llq  458 (968)
T KOG1060|consen  420 ASRIGS----VTDTCLNGLVQLLSSHD-ELVVAEAVVVIKRLLQ  458 (968)
T ss_pred             HHhhCc----hhhHHHHHHHHHHhccc-chhHHHHHHHHHHHHh
Confidence            542211    12234566777776653 4455556666655554

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=94.76  E-value=0.9  Score=41.08  Aligned_cols=77  Identities=17%  Similarity=0.098  Sum_probs=54.9

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      .+..|.|-+-|++.-+.++.++++++..++..+  ....+.+.  .|..|-.+|++.....|-.|.++|..++.....+-
T Consensus       263 ~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~--~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv  338 (898)
T COG5240         263 LQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVDQ--TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV  338 (898)
T ss_pred             HHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHHH--HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence            344455555555656789999999999988764  23334443  67888888888888889999999999988654443


Q ss_pred             H
Q 044293           87 S   87 (236)
Q Consensus        87 ~   87 (236)
                      .
T Consensus       339 ~  339 (898)
T COG5240         339 S  339 (898)
T ss_pred             e
Confidence            3

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.58  E-value=0.35  Score=44.17  Aligned_cols=197  Identities=13%  Similarity=0.105  Sum_probs=110.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC------hHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC
Q 044293            9 TINNCVSRSQSDSYEDQQKALQTLASITRVS------PQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP   82 (236)
Q Consensus         9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~------~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~   82 (236)
                      .....++.++++..++|..|++.+..++.-.      .........  .++..+...++..+-.+|..|+.+|..+-...
T Consensus       235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D--~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS  312 (823)
T KOG2259|consen  235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD--AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS  312 (823)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH--HHHHHHHHHHhcCceeeeehHHHHhchHHHhH
Confidence            3566777888888888888877766554332      112222322  35555655555544344444444444332111


Q ss_pred             c---------------------------------------------------hhHHhhhcccHHHHHHHHhccCCHHHHH
Q 044293           83 D---------------------------------------------------LKQSLASMETIYRLNWIIQSSSSQETVK  111 (236)
Q Consensus        83 ~---------------------------------------------------~~~~i~~~g~i~~L~~lL~~~~~~~~~~  111 (236)
                      +                                                   .-..|+..|+=..++.=|... -.|+++
T Consensus       313 ee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~  391 (823)
T KOG2259|consen  313 EEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRR  391 (823)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHH-HHHHHH
Confidence            1                                                   111233445555566555544 568999


Q ss_pred             HHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHH----HHH----h--C---cH
Q 044293          112 LASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTL----AVR----A--G---AV  177 (236)
Q Consensus       112 ~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~----~~~----~--g---~i  177 (236)
                      .|...++.|+.+. +..     ...+..|+.++.+....++..|+.+|..++.+-.-++.    +.+    .  +   ++
T Consensus       392 AAV~Sl~~La~ssP~FA-----~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l  466 (823)
T KOG2259|consen  392 AAVASLCSLATSSPGFA-----VRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREAL  466 (823)
T ss_pred             HHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHH
Confidence            9999999887643 221     34688999999998888999999998888775322211    111    0  1   11


Q ss_pred             HHHHHHhcCCChhhHHHHHH-HHHHHHcCChhhHHHHH
Q 044293          178 SELIHLIGSTEAEDLAGTSL-AVLNLLARFDEGMIALT  214 (236)
Q Consensus       178 ~~lv~ll~~~~~~~~~~~a~-~~L~~l~~~~~~~~~i~  214 (236)
                      .-|+...+-.+ .+..+.|+ ..|.||...|..|..++
T Consensus       467 ~elL~~~~~~d-~~~i~m~v~~lL~~L~kyPqDrd~i~  503 (823)
T KOG2259|consen  467 RELLKNARVSD-LECIDMCVAHLLKNLGKYPQDRDEIL  503 (823)
T ss_pred             HHHHHhcCCCc-HHHHHHHHHHHHHHhhhCCCCcHHHH
Confidence            22222333333 34445544 55667887776666654

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.56  E-value=1.4  Score=39.12  Aligned_cols=131  Identities=11%  Similarity=0.126  Sum_probs=89.6

Q ss_pred             HHhhccCCChHHHHHHHHHHHhhCCCCc----hhHHhhhcccHHHHHHHHhccC----C-HH-HHHHHHHHHHHhcccch
Q 044293           56 LLGLSKSSSPIIRTLSLSILLNLSLNPD----LKQSLASMETIYRLNWIIQSSS----S-QE-TVKLASSLICSLAMLDK  125 (236)
Q Consensus        56 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~----~~~~i~~~g~i~~L~~lL~~~~----~-~~-~~~~a~~~L~~Ls~~~~  125 (236)
                      +..++...+.+-+-.++-....++++++    +|..+.+.-|-+.+-++|.+.+    . +. .+.-+...|.-+|..++
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            3445555554445445555556666554    4777878877777888887642    2 23 34456677777888876


Q ss_pred             hhhhhcccCcHHHHHHhhcCCC-cH------HHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcC
Q 044293          126 NKARFGVAGTVQVLVKAVSAPS-NP------AGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS  186 (236)
Q Consensus       126 ~~~~i~~~g~i~~Lv~lL~~~~-~~------~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~  186 (236)
                      -..+=.--+.||.|..++..+. ++      ....+-.+|+..+.++.+...++..|+++.+-+.-..
T Consensus        96 lAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~  163 (698)
T KOG2611|consen   96 LASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL  163 (698)
T ss_pred             hccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC
Confidence            4433222567999999997642 22      5678889999999999999999999999998865543

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=94.48  E-value=1.8  Score=36.39  Aligned_cols=149  Identities=17%  Similarity=0.126  Sum_probs=84.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--ChHHHHHHHhccCcHHHHHhhccCCC--hHHHHHHHHHHHhhCC---C
Q 044293            9 TINNCVSRSQSDSYEDQQKALQTLASITRV--SPQYRSLLAQTDGAISTLLGLSKSSS--PIIRTLSLSILLNLSL---N   81 (236)
Q Consensus         9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~--~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~l~~---~   81 (236)
                      .+..+.+-++.+..+.+.-|+.++.-++-.  .......+.+  ...|.|...+..+.  +..|..++.+|.-++.   .
T Consensus        87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~--~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~  164 (309)
T PF05004_consen   87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE--ELKPVLKRILTDSSASPKARAACLEALAICTFVGGS  164 (309)
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH--HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC
Confidence            355556666777777788888887777655  1233455554  47889988887553  4555555555554433   2


Q ss_pred             C-chhHHhhhcccHHH--HHHHHhccC---------CHHHHHHHHHHHHHhc-ccchhhhhhcccCcHHHHHHhhcCCCc
Q 044293           82 P-DLKQSLASMETIYR--LNWIIQSSS---------SQETVKLASSLICSLA-MLDKNKARFGVAGTVQVLVKAVSAPSN  148 (236)
Q Consensus        82 ~-~~~~~i~~~g~i~~--L~~lL~~~~---------~~~~~~~a~~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~lL~~~~~  148 (236)
                      + +.-....  ..+..  .....+.+.         ++.+...|..+...|. ..+..+..-.-...+|.|+.+|.+.+.
T Consensus       165 d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~  242 (309)
T PF05004_consen  165 DEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDV  242 (309)
T ss_pred             ChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            2 2222111  22221  111222211         2456666666655543 333321111114679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 044293          149 PAGHHLLSSLAEL  161 (236)
Q Consensus       149 ~~~~~a~~aL~~L  161 (236)
                      .++..|-.+|+-|
T Consensus       243 ~VRiAAGEaiAll  255 (309)
T PF05004_consen  243 DVRIAAGEAIALL  255 (309)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988887776544

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.47  E-value=1.3  Score=41.58  Aligned_cols=151  Identities=11%  Similarity=0.071  Sum_probs=97.1

Q ss_pred             HHHhhCCC-CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHH--HHHHhhcCCCc-H
Q 044293           74 ILLNLSLN-PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQ--VLVKAVSAPSN-P  149 (236)
Q Consensus        74 ~L~~l~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~--~Lv~lL~~~~~-~  149 (236)
                      +|+++... ++++..+.+.||+..+.+.++..+..+....+.+.+.+++.....+........+.  .+-.++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            34455444 45688899999999999999977578899999999999998876555544322222  33334444443 5


Q ss_pred             HHHHHHHHHHHHhcCCC------------------------ChHHHHHhCcHHH-HHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          150 AGHHLLSSLAELVQFHG------------------------NSTLAVRAGAVSE-LIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       150 ~~~~a~~aL~~L~~~~~------------------------~~~~~~~~g~i~~-lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                      .-..++..|+.+..+.+                        ....+.-..-+.+ +..++..+..+..+--|+.++.++.
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~  653 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL  653 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence            55677777776655311                        1111111222334 5566665544566778999999988


Q ss_pred             C-ChhhHHHHHhcCCcHHHHHH
Q 044293          205 R-FDEGMIALTKTDQIVSLMVD  225 (236)
Q Consensus       205 ~-~~~~~~~i~~~g~~i~~lv~  225 (236)
                      . ++++...+...++ ++.+.+
T Consensus       654 ~~~~~~~~~~~~~~~-~~~~~~  674 (699)
T KOG3665|consen  654 EQNKEYCKLVRESNG-FELIEN  674 (699)
T ss_pred             HcChhhhhhhHhccc-hhhhhh
Confidence            5 6777777878776 566554

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=94.37  E-value=0.4  Score=39.31  Aligned_cols=173  Identities=20%  Similarity=0.162  Sum_probs=108.2

Q ss_pred             cHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhc-c-cHHHHHHHHhccC---CHHHHHHHHHHHHHhcccchh
Q 044293           52 AISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASM-E-TIYRLNWIIQSSS---SQETVKLASSLICSLAMLDKN  126 (236)
Q Consensus        52 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~-g-~i~~L~~lL~~~~---~~~~~~~a~~~L~~Ls~~~~~  126 (236)
                      ....+...+.+..++.+--++.++.-+..++..-..+... + ....+...+..+.   .+..+-.+++++.|+-.+...
T Consensus        64 ~~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~  143 (268)
T PF08324_consen   64 WLILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG  143 (268)
T ss_dssp             HHHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence            4566666665554455677888999889998876666533 2 3455555555432   567777899999999888888


Q ss_pred             hhhhcc-cC-cHHHHHHhhcCC----CcHHHHHHHHHHHHHhcC--CCChHHHHHhCcHHHHHHHh-cCCChhhHHHHHH
Q 044293          127 KARFGV-AG-TVQVLVKAVSAP----SNPAGHHLLSSLAELVQF--HGNSTLAVRAGAVSELIHLI-GSTEAEDLAGTSL  197 (236)
Q Consensus       127 ~~~i~~-~g-~i~~Lv~lL~~~----~~~~~~~a~~aL~~L~~~--~~~~~~~~~~g~i~~lv~ll-~~~~~~~~~~~a~  197 (236)
                      +..+.. .+ .+...+.-+...    +..++..++..+.|++..  ......-.+...+..+++.+ ....+++..-.++
T Consensus       144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L  223 (268)
T PF08324_consen  144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL  223 (268)
T ss_dssp             HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence            877776 33 344455444443    556777778888999862  12111112233456666644 3323578888999


Q ss_pred             HHHHHHcCChhhHHHHHhcCCcHHHHHH
Q 044293          198 AVLNLLARFDEGMIALTKTDQIVSLMVD  225 (236)
Q Consensus       198 ~~L~~l~~~~~~~~~i~~~g~~i~~lv~  225 (236)
                      -+|.++...+....+....=+ +...+.
T Consensus       224 vAlGtL~~~~~~~~~~~~~l~-~~~~~~  250 (268)
T PF08324_consen  224 VALGTLLSSSDSAKQLAKSLD-VKSVLS  250 (268)
T ss_dssp             HHHHHHHCCSHHHHHHCCCCT-HHHHHH
T ss_pred             HHHHHHhccChhHHHHHHHcC-hHHHHH
Confidence            999999987766666665433 344433

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=94.36  E-value=1.8  Score=39.28  Aligned_cols=142  Identities=16%  Similarity=0.174  Sum_probs=77.5

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      .+.|..++++..+++..+|..|.+.|-.+|.+++++   +.   .++..|+++|.++++.-...+-.+|..+-..+    
T Consensus        58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~---v~---kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d----  127 (556)
T PF05918_consen   58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEH---VS---KVADVLVQLLQTDDPVELDAVKNSLMSLLKQD----  127 (556)
T ss_dssp             HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T----HH---HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHH---Hh---HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC----
Confidence            567888999999999999999999999999875544   33   35778999999887655444445554432211    


Q ss_pred             HhhhcccHHHHHHHHh---ccCCHHHHHHHHHHHH-Hhcccc-h-hh--hhhcccCcHHHHHHhhcCCCcHHHHHHHHHH
Q 044293           87 SLASMETIYRLNWIIQ---SSSSQETVKLASSLIC-SLAMLD-K-NK--ARFGVAGTVQVLVKAVSAPSNPAGHHLLSSL  158 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~---~~~~~~~~~~a~~~L~-~Ls~~~-~-~~--~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL  158 (236)
                         -.+.+..+.+.+.   ++ ++.+++.+...|. .+-... + ..  ..+ +.-++..+-++|.+-....-......|
T Consensus       128 ---~k~tL~~lf~~i~~~~~~-de~~Re~~lkFl~~kl~~l~~~~~~p~~E~-e~~i~~~ikkvL~DVTaeEF~l~m~lL  202 (556)
T PF05918_consen  128 ---PKGTLTGLFSQIESSKSG-DEQVRERALKFLREKLKPLKPELLTPQKEM-EEFIVDEIKKVLQDVTAEEFELFMSLL  202 (556)
T ss_dssp             ---HHHHHHHHHHHHH---HS--HHHHHHHHHHHHHHGGGS-TTTS---HHH-HHHHHHHHHHHCTT--HHHHHHHHHHH
T ss_pred             ---cHHHHHHHHHHHHhcccC-chHHHHHHHHHHHHHHhhCcHHHhhchHHH-HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence               1344555555554   45 6788999888775 332211 1 11  111 123344444556544434444555555


Q ss_pred             HHHhc
Q 044293          159 AELVQ  163 (236)
Q Consensus       159 ~~L~~  163 (236)
                      ..+-.
T Consensus       203 ~~lk~  207 (556)
T PF05918_consen  203 KSLKI  207 (556)
T ss_dssp             HTSGG
T ss_pred             HhCcc
Confidence            55554

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=94.24  E-value=1.4  Score=42.01  Aligned_cols=178  Identities=15%  Similarity=0.124  Sum_probs=108.9

Q ss_pred             hHHHhHHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293            4 PRVRETINNCVSRSQ--SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN   81 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~   81 (236)
                      +++...+...++.|+  ..|.++++.|..++..+...=.++-....  +..++.+++-|.+  +..|..|..|+..++..
T Consensus       564 ~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl~n--EiTRl~AvkAlt~Ia~S  639 (1233)
T KOG1824|consen  564 PYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERLGN--EITRLTAVKALTLIAMS  639 (1233)
T ss_pred             hhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHhc--hhHHHHHHHHHHHHHhc
Confidence            344555666677775  45788888888887665433112222222  2466777776644  46677889999998887


Q ss_pred             CchhHHh-hhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch--hhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHH
Q 044293           82 PDLKQSL-ASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK--NKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSL  158 (236)
Q Consensus        82 ~~~~~~i-~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL  158 (236)
                      +-.-... .-..+++.+.+.+... ....+.....++-.|.....  ...... .-.+..+-.++...+-.+.+.|+..|
T Consensus       640 ~l~i~l~~~l~~il~~l~~flrK~-~r~lr~~~l~a~~~L~~~~~~~~~~~~~-e~vL~el~~Lisesdlhvt~~a~~~L  717 (1233)
T KOG1824|consen  640 PLDIDLSPVLTEILPELASFLRKN-QRALRLATLTALDKLVKNYSDSIPAELL-EAVLVELPPLISESDLHVTQLAVAFL  717 (1233)
T ss_pred             cceeehhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            7442221 1245778888888765 44555555555555544321  111111 12233333444444445778888888


Q ss_pred             HHHhcCCCChHHHHHhCcHHHHHHHhcCC
Q 044293          159 AELVQFHGNSTLAVRAGAVSELIHLIGST  187 (236)
Q Consensus       159 ~~L~~~~~~~~~~~~~g~i~~lv~ll~~~  187 (236)
                      ..+...+......+..-.++.++.+++++
T Consensus       718 ~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp  746 (1233)
T KOG1824|consen  718 TTLAIIQPSSLLKISNPILDEIIRLLRSP  746 (1233)
T ss_pred             HHHHhcccHHHHHHhhhhHHHHHHHhhCc
Confidence            88888888777777778889999999875

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.17  E-value=2.6  Score=39.14  Aligned_cols=106  Identities=12%  Similarity=0.082  Sum_probs=69.3

Q ss_pred             hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc-CCChHHHHHHHHHHHhhCCCC
Q 044293            4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK-SSSPIIRTLSLSILLNLSLNP   82 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~   82 (236)
                      +-+...+..|=++|.+.+...|--|++.+..++.. ......+..+   .+.++..|+ ..|..++..|+..|+.+|-.+
T Consensus       325 ~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~davK~h---~d~Ii~sLkterDvSirrravDLLY~mcD~~  400 (938)
T KOG1077|consen  325 ELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDAVKKH---QDTIINSLKTERDVSIRRRAVDLLYAMCDVS  400 (938)
T ss_pred             HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHHHHHH---HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence            34455666666777666666776677777777765 3344555443   777888888 568889999999999998766


Q ss_pred             chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 044293           83 DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSL  120 (236)
Q Consensus        83 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~L  120 (236)
                      +.+..+.      -+++.|.+- +..+++..+.=..-|
T Consensus       401 Nak~IV~------elLqYL~tA-d~sireeivlKvAIL  431 (938)
T KOG1077|consen  401 NAKQIVA------ELLQYLETA-DYSIREEIVLKVAIL  431 (938)
T ss_pred             hHHHHHH------HHHHHHhhc-chHHHHHHHHHHHHH
Confidence            5554442      355666555 666666544333333

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.14  E-value=2.5  Score=41.32  Aligned_cols=141  Identities=19%  Similarity=0.164  Sum_probs=100.6

Q ss_pred             hHHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc-CCChHHHHHHHHHHHhhCCCC
Q 044293            8 ETINNCVSRSQ----SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK-SSSPIIRTLSLSILLNLSLNP   82 (236)
Q Consensus         8 ~~i~~lv~~L~----~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~   82 (236)
                      ...|.+++..+    .++|+.|..|.-+|..++--+..    |.+  .-.|.|+..+. +++|.+|.++..+++-++..=
T Consensus       919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fce--s~l~llftimeksp~p~IRsN~VvalgDlav~f  992 (1251)
T KOG0414|consen  919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCE--SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF  992 (1251)
T ss_pred             HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHH--HHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence            34566666664    45799999999999998865332    333  35899999987 789999999988888776532


Q ss_pred             chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293           83 DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV  162 (236)
Q Consensus        83 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~  162 (236)
                      +|   ++ ...-+.|...|... ++.+++.|..+|.+|-..+.    |--.|-++.+...|-+++..+..-|-.....|+
T Consensus       993 pn---li-e~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  993 PN---LI-EPWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM----IKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             cc---cc-chhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            22   11 11334455566666 89999999999999988664    333688999999999998777666665555554


Q ss_pred             c
Q 044293          163 Q  163 (236)
Q Consensus       163 ~  163 (236)
                      .
T Consensus      1064 ~ 1064 (1251)
T KOG0414|consen 1064 S 1064 (1251)
T ss_pred             h
Confidence            3

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=94.09  E-value=0.52  Score=34.96  Aligned_cols=75  Identities=12%  Similarity=0.166  Sum_probs=62.8

Q ss_pred             hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhC
Q 044293            4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLS   79 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~   79 (236)
                      ...++.+..+.+.|++.++.++..|+..|-.+..+ +......+... ..+..|+.+++. .++.++..++..+...+
T Consensus        33 ~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask-~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~  109 (144)
T cd03568          33 NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASR-DFTQELKKLINDRVHPTVKEKLREVVKQWA  109 (144)
T ss_pred             ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhH-HHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence            34577899999999999999999999999988887 34567778876 999999999987 67889999888887654

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=93.96  E-value=0.6  Score=34.40  Aligned_cols=73  Identities=15%  Similarity=0.207  Sum_probs=59.8

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC------CChHHHHHHHHHHHh
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS------SSPIIRTLSLSILLN   77 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~   77 (236)
                      ..++.+..+.+.|++.++.++..|+..|-.+..+ +..+...|... +++..|+.+++.      .++.++...+..+..
T Consensus        35 ~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~-~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~  113 (139)
T cd03567          35 GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKF-RFLNELIKLVSPKYLGSRTSEKVKTKIIELLYS  113 (139)
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhH-HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence            3467889999999999999999999999888876 45677888876 999999999963      457888888887765


Q ss_pred             h
Q 044293           78 L   78 (236)
Q Consensus        78 l   78 (236)
                      -
T Consensus       114 W  114 (139)
T cd03567         114 W  114 (139)
T ss_pred             H
Confidence            3

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.95  E-value=5.3  Score=37.18  Aligned_cols=116  Identities=19%  Similarity=0.168  Sum_probs=83.0

Q ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293            6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK   85 (236)
Q Consensus         6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~   85 (236)
                      +.+++..++....+++..+|...+..|..+...+.+.-+-+..  +..+.+..-+....|.+|..|+-+|.-+-.++.+-
T Consensus        83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn--~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de  160 (892)
T KOG2025|consen   83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN--KLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE  160 (892)
T ss_pred             HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH--HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence            3556666666667888889999999999998865555555553  78888888888888999999999999887544331


Q ss_pred             HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhh
Q 044293           86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARF  130 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i  130 (236)
                          +......+..+++.+.+++++..|..   +++-++....-|
T Consensus       161 ----e~~v~n~l~~liqnDpS~EVRRaaLs---nI~vdnsTlp~I  198 (892)
T KOG2025|consen  161 ----ECPVVNLLKDLIQNDPSDEVRRAALS---NISVDNSTLPCI  198 (892)
T ss_pred             ----cccHHHHHHHHHhcCCcHHHHHHHHH---hhccCcccchhH
Confidence                23456788889987767899987654   445444433333

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=93.94  E-value=1.4  Score=43.04  Aligned_cols=199  Identities=16%  Similarity=0.134  Sum_probs=110.8

Q ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC----ChHHHHHHHhccCcHHHHHhhccCCChH-HHHHHHHHHHhhC-
Q 044293            6 VRETINNCVSRSQSDSYEDQQKALQTLASITRV----SPQYRSLLAQTDGAISTLLGLSKSSSPI-IRTLSLSILLNLS-   79 (236)
Q Consensus         6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~----~~~~~~~i~~~~g~i~~Lv~lL~~~~~~-~~~~a~~~L~~l~-   79 (236)
                      +...+|.+|-++.++.+++|..|+.+|..+...    .+.+...|.+-  .+|.|-.++...++. +|-.-+..|..|| 
T Consensus       460 LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY--lfP~L~~l~~d~~~~~vRiayAsnla~LA~  537 (1431)
T KOG1240|consen  460 LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY--LFPHLNHLLNDSSAQIVRIAYASNLAQLAK  537 (1431)
T ss_pred             HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh--hhhhhHhhhccCccceehhhHHhhHHHHHH
Confidence            466889999999999999999999998776533    23344455543  677777777663322 2211111222111 


Q ss_pred             ------------------CCCch--hHHhhhc-------ccHHHHH-HHHhccCCHHHHHHHHHHHHHhcccchhhhhhc
Q 044293           80 ------------------LNPDL--KQSLASM-------ETIYRLN-WIIQSSSSQETVKLASSLICSLAMLDKNKARFG  131 (236)
Q Consensus        80 ------------------~~~~~--~~~i~~~-------g~i~~L~-~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~  131 (236)
                                        .++++  ...--..       ..++..+ .+|... ++-++....-.|.-||..-. |+.- 
T Consensus       538 tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFG-k~ks-  614 (1431)
T KOG1240|consen  538 TAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFG-KEKS-  614 (1431)
T ss_pred             HHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhh-hccc-
Confidence                              12222  1110001       1222222 233333 44555555555666654331 1110 


Q ss_pred             ccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHH
Q 044293          132 VAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMI  211 (236)
Q Consensus       132 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  211 (236)
                      .-=.++.|+.+|++.+...+..-...+..+|..-..+.  ++.+.+|.|.+-|.+++ +.+...|+.+|..|+...-.|+
T Consensus       615 ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs--~seyllPLl~Q~ltD~E-E~Viv~aL~~ls~Lik~~ll~K  691 (1431)
T KOG1240|consen  615 NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS--VSEYLLPLLQQGLTDGE-EAVIVSALGSLSILIKLGLLRK  691 (1431)
T ss_pred             ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee--HHHHHHHHHHHhccCcc-hhhHHHHHHHHHHHHHhcccch
Confidence            12346778888887765655555555655555333221  24567788888888874 6677888888888886654443


Q ss_pred             H
Q 044293          212 A  212 (236)
Q Consensus       212 ~  212 (236)
                      .
T Consensus       692 ~  692 (1431)
T KOG1240|consen  692 P  692 (1431)
T ss_pred             H
Confidence            3

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=93.81  E-value=0.12  Score=45.42  Aligned_cols=161  Identities=11%  Similarity=0.077  Sum_probs=88.0

Q ss_pred             HHHHHHHHHhhCCCCchhHHhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhccc-----chhhhhhcccCcHHH-HH
Q 044293           68 RTLSLSILLNLSLNPDLKQSLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAML-----DKNKARFGVAGTVQV-LV  140 (236)
Q Consensus        68 ~~~a~~~L~~l~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~-----~~~~~~i~~~g~i~~-Lv  140 (236)
                      +..|.+++.....|+.-+.... -.+.-..+...+.+. ....++.++|++.|++.-     +..+..-.  -++.. |.
T Consensus       408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~e--R~sg~ll~  484 (728)
T KOG4535|consen  408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQE--RFSGLLLL  484 (728)
T ss_pred             HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHH--HHHHHHHH
Confidence            4455566666667776654433 333444445555444 567888999999998752     12111111  11222 22


Q ss_pred             HhhcC------CCcHHHHHHHHHHHHHhcCCCC----hHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhH
Q 044293          141 KAVSA------PSNPAGHHLLSSLAELVQFHGN----STLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGM  210 (236)
Q Consensus       141 ~lL~~------~~~~~~~~a~~aL~~L~~~~~~----~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  210 (236)
                      ++++.      .++.++.++.++|.|+..--+-    --.....|.+..++.-.-....-.++++++.++.||..++.-.
T Consensus       485 ~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~  564 (728)
T KOG4535|consen  485 KMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALP  564 (728)
T ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccc
Confidence            33322      3567889999999998763211    0011122333333222222223568999999999999988652


Q ss_pred             -HHHHhcCCcHHHHHHHhhCCc
Q 044293          211 -IALTKTDQIVSLMVDVLKGRS  231 (236)
Q Consensus       211 -~~i~~~g~~i~~lv~~l~~~~  231 (236)
                       ..+.=.+-+.+.|..++...+
T Consensus       565 lq~~~wA~~~F~~L~~Lv~~~~  586 (728)
T KOG4535|consen  565 LQTAPWASQAFNALTSLVTSCK  586 (728)
T ss_pred             ccCCCchHHHHHHHHHHHHHhc
Confidence             222222334677777776544

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=93.80  E-value=0.62  Score=34.45  Aligned_cols=74  Identities=18%  Similarity=0.161  Sum_probs=61.8

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhcc-CCChHHHHHHHHHHHhhC
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSK-SSSPIIRTLSLSILLNLS   79 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~   79 (236)
                      ...+.+..+.+.|+++++.++..|+..|-.+..+ +......+... +.+..|+.+++ ..++.++..++..+..-+
T Consensus        38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~-~fl~~l~~l~~~~~~~~Vk~kil~li~~W~  113 (142)
T cd03569          38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASR-EFMDELKDLIKTTKNEEVRQKILELIQAWA  113 (142)
T ss_pred             CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhH-HHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence            3467899999999999999999999999988887 45677788876 99999999987 456788888888887644

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.77  E-value=0.22  Score=33.90  Aligned_cols=71  Identities=13%  Similarity=0.094  Sum_probs=56.3

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN   81 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~   81 (236)
                      +.....+..+.++.+.+|..|+..|+.+.....   ..+...++++..+...|+++++-+--+|...|..|+..
T Consensus         3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~   73 (92)
T PF10363_consen    3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR   73 (92)
T ss_pred             HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence            456778888999999999999999999998754   12222236788888889999998888899998887764

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.76  E-value=0.42  Score=43.67  Aligned_cols=101  Identities=18%  Similarity=0.228  Sum_probs=76.6

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcc
Q 044293           13 CVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASME   92 (236)
Q Consensus        13 lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g   92 (236)
                      +|.=|.++-.++|..|+..+..|+.+.+.+    ..  ..+..|+++++.+...+|..|+.+|..++.+     ..++..
T Consensus       378 ~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F----A~--~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~-----l~i~ee  446 (823)
T KOG2259|consen  378 LVHGLEDEFYEVRRAAVASLCSLATSSPGF----AV--RALDFLVDMFNDEIEVVRLKAIFALTMISVH-----LAIREE  446 (823)
T ss_pred             eeeechHHHHHHHHHHHHHHHHHHcCCCCc----HH--HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-----heecHH
Confidence            344444445679999999999999876654    33  4699999999988889999999999998887     233556


Q ss_pred             cHHHHHHHHhccCCHHHHHHHHHHHHHhcccch
Q 044293           93 TIYRLNWIIQSSSSQETVKLASSLICSLAMLDK  125 (236)
Q Consensus        93 ~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~  125 (236)
                      -++.+...|... ++++++..-..|.+.-..+-
T Consensus       447 ql~~il~~L~D~-s~dvRe~l~elL~~~~~~d~  478 (823)
T KOG2259|consen  447 QLRQILESLEDR-SVDVREALRELLKNARVSDL  478 (823)
T ss_pred             HHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCcH
Confidence            778888888877 78888877777766555443

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=93.75  E-value=0.26  Score=39.55  Aligned_cols=122  Identities=15%  Similarity=0.152  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHhcccch---hhhhhcc---cCcHHHHHHhhcCC-C----------cHHHHHHHHHHHHHhcCCCChH
Q 044293          107 QETVKLASSLICSLAMLDK---NKARFGV---AGTVQVLVKAVSAP-S----------NPAGHHLLSSLAELVQFHGNST  169 (236)
Q Consensus       107 ~~~~~~a~~~L~~Ls~~~~---~~~~i~~---~g~i~~Lv~lL~~~-~----------~~~~~~a~~aL~~L~~~~~~~~  169 (236)
                      ..++++|..+|.|++..=+   .-+.|..   .|.+...|---... +          -.-++.|+.+|..||..+.|..
T Consensus        80 ~~lREnalV~laNisgqLdLs~~~e~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVD  159 (257)
T PF12031_consen   80 EQLRENALVTLANISGQLDLSDYPESIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVD  159 (257)
T ss_pred             HHHhhcceEeeeeeeeeeecccCchHHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcc
Confidence            4788999999999886432   1122211   23333333221110 1          1246899999999999999988


Q ss_pred             HHHHhC-------cHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh--hHHHHHhcCCcHHHHHHHhhC
Q 044293          170 LAVRAG-------AVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE--GMIALTKTDQIVSLMVDVLKG  229 (236)
Q Consensus       170 ~~~~~g-------~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~--~~~~i~~~g~~i~~lv~~l~~  229 (236)
                      .+...+       .+..|+.++....++..+|.|+.+|.+|+..++  +|..-.+.+ .|..|+.++..
T Consensus       160 liLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~-~i~~Li~FiE~  227 (257)
T PF12031_consen  160 LILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP-CISHLIAFIED  227 (257)
T ss_pred             eeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc-hHHHHHHHHHH
Confidence            776544       445577777666567789999999999997653  344444554 58999988864

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=93.74  E-value=1.4  Score=36.08  Aligned_cols=158  Identities=23%  Similarity=0.215  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhccCc-HHHHHhhccC----CChHHHHHHHHHHHhhCCCCchhHHhhhc-c-cHHHH
Q 044293           25 QQKALQTLASITRVSPQYRSLLAQTDGA-ISTLLGLSKS----SSPIIRTLSLSILLNLSLNPDLKQSLASM-E-TIYRL   97 (236)
Q Consensus        25 ~~~a~~~L~~l~~~~~~~~~~i~~~~g~-i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~i~~~-g-~i~~L   97 (236)
                      +.=++..+|.++.+ +.....+...+++ ...+..++..    ..+..+--++++++|+-.++.++..+.+. + .+-..
T Consensus        80 ~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~  158 (268)
T PF08324_consen   80 RFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILEL  158 (268)
T ss_dssp             -HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHH
T ss_pred             chhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHH
Confidence            44456666666654 4444455444222 3444444332    34566778999999999999998888754 3 23333


Q ss_pred             HHHHhccC---CHHHHHHHHHHHHHhcccchhhhhhc--ccCcHHHHHHhhcC--CCcHHHHHHHHHHHHHhcCCCChHH
Q 044293           98 NWIIQSSS---SQETVKLASSLICSLAMLDKNKARFG--VAGTVQVLVKAVSA--PSNPAGHHLLSSLAELVQFHGNSTL  170 (236)
Q Consensus        98 ~~lL~~~~---~~~~~~~a~~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~L~~~~~~~~~  170 (236)
                      +..+..+.   +..++..+++++.|++..-.....-.  ....+..++..+..  .++++...++.||++|...+.....
T Consensus       159 ~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~  238 (268)
T PF08324_consen  159 LSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQ  238 (268)
T ss_dssp             CHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred             HHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHH
Confidence            33333221   46788888899999987543222111  13356666674433  4778889999999999976666555


Q ss_pred             HHH-hCcHHHHHHH
Q 044293          171 AVR-AGAVSELIHL  183 (236)
Q Consensus       171 ~~~-~g~i~~lv~l  183 (236)
                      ..+ .|+-..+-..
T Consensus       239 ~~~~l~~~~~~~~~  252 (268)
T PF08324_consen  239 LAKSLDVKSVLSKK  252 (268)
T ss_dssp             HCCCCTHHHHHHHH
T ss_pred             HHHHcChHHHHHHH
Confidence            544 3444443333

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=93.70  E-value=1.8  Score=39.90  Aligned_cols=199  Identities=14%  Similarity=0.108  Sum_probs=108.6

Q ss_pred             CCchHH--HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHH-------HHHHHhccCcHHHHHhhccC-CChHHHHH
Q 044293            1 MSAPRV--RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQY-------RSLLAQTDGAISTLLGLSKS-SSPIIRTL   70 (236)
Q Consensus         1 ~~~~~~--~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~-------~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~   70 (236)
                      ||+||.  .+.+..+|++++.++++.+..|+..++...+.+...       -+++.-   -...|..+-.+ .++...+.
T Consensus        39 lSEED~~lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrp---hy~~Lk~i~~~~~~~n~Kk~  115 (878)
T KOG2005|consen   39 LSEEDLQLKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRP---HYGVLKEIYESMADSNLKKW  115 (878)
T ss_pred             ccHHHHHhhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhcc---chhHHHHHHHhccCchhHhH
Confidence            567776  678999999999999999999999998876653211       111111   12223332221 24566778


Q ss_pred             HHHHHHhhCCCCchhHHhhhc---c-----------cHHHHHHHHh----c--cC---CHHHHHHHHHHHHH-hcccc--
Q 044293           71 SLSILLNLSLNPDLKQSLASM---E-----------TIYRLNWIIQ----S--SS---SQETVKLASSLICS-LAMLD--  124 (236)
Q Consensus        71 a~~~L~~l~~~~~~~~~i~~~---g-----------~i~~L~~lL~----~--~~---~~~~~~~a~~~L~~-Ls~~~--  124 (236)
                      .+.+|..+|....++......   |           -+..|..-+.    .  .+   -.++...+-.++-+ +..+.  
T Consensus       116 laDIlSvLamt~se~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE~  195 (878)
T KOG2005|consen  116 LADILSVLAMTMSERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAEF  195 (878)
T ss_pred             HHHHHHHHheeecccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccchh
Confidence            888888888876554332111   1           1222222111    1  00   12333334444432 33332  


Q ss_pred             hhhhhhcccCcHHHHHHhhcCCCcHH--------------------HHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHh
Q 044293          125 KNKARFGVAGTVQVLVKAVSAPSNPA--------------------GHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLI  184 (236)
Q Consensus       125 ~~~~~i~~~g~i~~Lv~lL~~~~~~~--------------------~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll  184 (236)
                      +....+.+-|.|..|++.....+..-                    .+.|...-.....+++.-.-.+..+-.+...+.+
T Consensus       196 eAiDlL~Eve~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf  275 (878)
T KOG2005|consen  196 EAIDLLMEVEGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAIRLDDMKEVKEVF  275 (878)
T ss_pred             HHHHHHHHhhhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHH
Confidence            34556667888898888887654321                    1222222222222333333344455566666667


Q ss_pred             cCCChhhHHHHHHHHHHH
Q 044293          185 GSTEAEDLAGTSLAVLNL  202 (236)
Q Consensus       185 ~~~~~~~~~~~a~~~L~~  202 (236)
                      .+.+++..+++++.+|..
T Consensus       276 ~s~~D~~~kKQ~~ymLaR  293 (878)
T KOG2005|consen  276 TSCTDPLLKKQMAYMLAR  293 (878)
T ss_pred             HhccCHHHHHHHHHHHHh
Confidence            665557788888888764

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=93.54  E-value=0.72  Score=33.15  Aligned_cols=76  Identities=11%  Similarity=0.179  Sum_probs=54.2

Q ss_pred             chHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccCCC--------hHHHHHHHH
Q 044293            3 APRVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKSSS--------PIIRTLSLS   73 (236)
Q Consensus         3 ~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~--------~~~~~~a~~   73 (236)
                      ..+..+....|.+.|++.++-++.+++..|..++.. ++..+..+.+....|..+..+=...+        ..+|..|-.
T Consensus        33 ~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~E  112 (122)
T cd03572          33 VGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQE  112 (122)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHH
Confidence            455678889999999988899999999999998876 45677777766466666666543233        245666555


Q ss_pred             HHHhh
Q 044293           74 ILLNL   78 (236)
Q Consensus        74 ~L~~l   78 (236)
                      ++..+
T Consensus       113 l~~~i  117 (122)
T cd03572         113 LIKAI  117 (122)
T ss_pred             HHHHH
Confidence            55544

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=93.51  E-value=0.56  Score=44.39  Aligned_cols=152  Identities=14%  Similarity=0.085  Sum_probs=104.4

Q ss_pred             hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-C
Q 044293            4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-P   82 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~   82 (236)
                      +.+-+.+|.+++...+....++..-+.+|.+.-.+-|. ...+-+.+...|.|++-|+-+|..+|..++.++.-+-.. +
T Consensus       863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~  941 (1030)
T KOG1967|consen  863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE  941 (1030)
T ss_pred             HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence            44567899999999855555666677778777765443 222222256788888888889999988888877643322 2


Q ss_pred             chhHHhhhcccHHHHHHHHhccCC--HHHHHHHHHHHHHhcc-cchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHH
Q 044293           83 DLKQSLASMETIYRLNWIIQSSSS--QETVKLASSLICSLAM-LDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSS  157 (236)
Q Consensus        83 ~~~~~i~~~g~i~~L~~lL~~~~~--~~~~~~a~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a  157 (236)
                      .-...- -.-.+|.+..+=.+.++  ..+++.|.-+|..|.. .+.+.-.-.+...+..|++.|.++..-+++.|.++
T Consensus       942 tL~t~~-~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  942 TLQTEH-LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             ccchHH-HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            221111 13466666665444422  6788899999999988 66655555668899999999998877788888866

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.51  E-value=1  Score=42.46  Aligned_cols=70  Identities=13%  Similarity=0.153  Sum_probs=52.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC
Q 044293            9 TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL   80 (236)
Q Consensus         9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~   80 (236)
                      .....+..+.++...++.+|+..|+.+..+. .....+.+. +++....+.|.+.|+-+--+|...+..||.
T Consensus       728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~e-kvl~i~ld~LkdedsyvyLnaI~gv~~Lce  797 (982)
T KOG4653|consen  728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGE-KVLAIALDTLKDEDSYVYLNAIRGVVSLCE  797 (982)
T ss_pred             HHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHH-HHHHHHHHHhcccCceeeHHHHHHHHHHHH
Confidence            3455667777788889999999999999864 334445555 899999999999998777777775555443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=93.41  E-value=0.84  Score=41.59  Aligned_cols=182  Identities=11%  Similarity=0.092  Sum_probs=102.6

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChH---HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQ---YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN   81 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~---~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~   81 (236)
                      -+++.+|.|...|++..+.++......+...+...++   .|+++.-.    =.|+++|.+.+.+++++|...+..++. 
T Consensus       685 Pi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc----feLvd~Lks~nKeiRR~A~~tfG~Is~-  759 (975)
T COG5181         685 PISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRIC----FELVDSLKSWNKEIRRNATETFGCISR-  759 (975)
T ss_pred             chhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHH----HHHHHHHHHhhHHHHHhhhhhhhhHHh-
Confidence            3578899999999988888999998888888877554   46666532    346788888899999999988877654 


Q ss_pred             CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293           82 PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL  161 (236)
Q Consensus        82 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L  161 (236)
                           .|.-.+.+..|+.-|+.. +...+...+.++.-.   .+.+..   -..+|.|+.--..++..++...+++++.+
T Consensus       760 -----aiGPqdvL~~LlnnLkvq-eRq~RvctsvaI~iV---ae~cgp---fsVlP~lm~dY~TPe~nVQnGvLkam~fm  827 (975)
T COG5181         760 -----AIGPQDVLDILLNNLKVQ-ERQQRVCTSVAISIV---AEYCGP---FSVLPTLMSDYETPEANVQNGVLKAMCFM  827 (975)
T ss_pred             -----hcCHHHHHHHHHhcchHH-HHHhhhhhhhhhhhh---HhhcCc---hhhHHHHHhcccCchhHHHHhHHHHHHHH
Confidence                 222223333444444332 222222222222211   111211   23455554444445555666666665544


Q ss_pred             hcC--CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293          162 VQF--HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       162 ~~~--~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~  206 (236)
                      =..  +..++.+  .-..|.+-+.|.+.| +..+..|+.++..|+-+
T Consensus       828 Feyig~~s~dYv--y~itPlleDAltDrD-~vhRqta~nvI~Hl~Ln  871 (975)
T COG5181         828 FEYIGQASLDYV--YSITPLLEDALTDRD-PVHRQTAMNVIRHLVLN  871 (975)
T ss_pred             HHHHHHHHHHHH--HHhhHHHHhhhcccc-hHHHHHHHHHHHHHhcC
Confidence            332  1222222  233455555555553 45556666677666644

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.20  E-value=3.4  Score=40.34  Aligned_cols=205  Identities=16%  Similarity=0.185  Sum_probs=105.9

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhc-cCcHHHHHhhccCCChHHHHHHHHHHHhhCC-CC-chhHHhhhcccH
Q 044293           18 QSDSYEDQQKALQTLASITRVSPQYRSLLAQT-DGAISTLLGLSKSSSPIIRTLSLSILLNLSL-NP-DLKQSLASMETI   94 (236)
Q Consensus        18 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~-~~~~~i~~~g~i   94 (236)
                      ++.+..+|.++.+.|..++.. +.......+. ..+...|.+-+++.....+...+.+|..+-. ++ ++...+. . .|
T Consensus       664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k-~I  740 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-K-LI  740 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-H-HH
Confidence            355788999999999999876 2222222211 1233444444444455556666666654422 22 3333332 2 33


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhc---ccCcHHHHHHhhcCC--CcHHHHHHH--HHHHHHhcCCCC
Q 044293           95 YRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG---VAGTVQVLVKAVSAP--SNPAGHHLL--SSLAELVQFHGN  167 (236)
Q Consensus        95 ~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~---~~g~i~~Lv~lL~~~--~~~~~~~a~--~aL~~L~~~~~~  167 (236)
                      +-++-.++.. +...+++|..+|..++... .....+   ....|...+.++..+  +......+.  -+++.+.....+
T Consensus       741 ~EvIL~~Ke~-n~~aR~~Af~lL~~i~~i~-~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~  818 (1176)
T KOG1248|consen  741 PEVILSLKEV-NVKARRNAFALLVFIGAIQ-SSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN  818 (1176)
T ss_pred             HHHHHhcccc-cHHHHhhHHHHHHHHHHHH-hhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence            3333344666 8899999999998887311 001111   123566666666554  333333222  233333221111


Q ss_pred             -hHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhC
Q 044293          168 -STLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKG  229 (236)
Q Consensus       168 -~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~  229 (236)
                       -..-.-.+.+..+...|.++ .+++...|++.+..++. .|+..-.-.... +++.+..+++.
T Consensus       819 ~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~-LL~sll~ls~d  880 (1176)
T KOG1248|consen  819 ILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEE-LLPSLLALSHD  880 (1176)
T ss_pred             cccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHH-HHHHHHHHHHh
Confidence             11111123444455555555 47888888888887764 455444433333 46666665554

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.19  E-value=2.3  Score=39.41  Aligned_cols=103  Identities=19%  Similarity=0.114  Sum_probs=78.6

Q ss_pred             CcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhh
Q 044293           51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARF  130 (236)
Q Consensus        51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i  130 (236)
                      |.+..++....+++..+|..++.+|.-+......++.-+-++....+..-+..- .+.++..|..+|..+-.++.+-   
T Consensus        85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~de---  160 (892)
T KOG2025|consen   85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDPKDE---  160 (892)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCCCCC---
Confidence            678888888888899999999999998877555566666677888888777766 6899999999999998654211   


Q ss_pred             cccCcHHHHHHhhcC-CCcHHHHHHHHHH
Q 044293          131 GVAGTVQVLVKAVSA-PSNPAGHHLLSSL  158 (236)
Q Consensus       131 ~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL  158 (236)
                       +..++..+..+++. +++.+++.++..+
T Consensus       161 -e~~v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  161 -ECPVVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             -cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence             24667788888875 4677777666544

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=92.79  E-value=4.5  Score=36.83  Aligned_cols=139  Identities=12%  Similarity=0.092  Sum_probs=85.4

Q ss_pred             hHHHHHHHHHHHhhCCC-CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhh
Q 044293           65 PIIRTLSLSILLNLSLN-PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAV  143 (236)
Q Consensus        65 ~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL  143 (236)
                      .+++.+-+.+|..+-.. +..... ++.-.+..++++|++.+..-+-.....++.+|+..-+.+-.-....++|.|.+-|
T Consensus       570 ~elqSN~~~vl~aiir~~~~~ie~-v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~al  648 (858)
T COG5215         570 EELQSNYIGVLEAIIRTRRRDIED-VEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRAL  648 (858)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence            35667777666654332 111111 1233778888999876323344456677777766444343333478999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCC-hhhHHHHHHHHHHHHc
Q 044293          144 SAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTE-AEDLAGTSLAVLNLLA  204 (236)
Q Consensus       144 ~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~-~~~~~~~a~~~L~~l~  204 (236)
                      +..+..+...++..++.|+..-+..-..........|++.|+++. +++++-..+.++..++
T Consensus       649 n~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIA  710 (858)
T COG5215         649 NCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIA  710 (858)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHH
Confidence            777778888888888888876544433334445667778776642 3455555555555544

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=92.78  E-value=1.3  Score=32.36  Aligned_cols=75  Identities=17%  Similarity=0.203  Sum_probs=60.9

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhhccC---CChHHHHHHHHHHHhhCC
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGLSKS---SSPIIRTLSLSILLNLSL   80 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~~l~~   80 (236)
                      ...+.+..|.+.|+++++.++..|+..|-.+..+. +.+...+... ..+..|+.++..   .++.++..++..+...+.
T Consensus        34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~-~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADK-EFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhH-HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            34678899999999999999999999999988874 4477778775 788889999875   467889999888876543

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=92.71  E-value=2.5  Score=39.14  Aligned_cols=156  Identities=13%  Similarity=0.087  Sum_probs=102.4

Q ss_pred             HHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 044293           43 RSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM  122 (236)
Q Consensus        43 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~  122 (236)
                      ++.+.+  .++|.|..-++..+..+|+.++.++..++..=+  -..++.-.+|.+-.+.....+..++.+++.++..+..
T Consensus       383 ~e~~~~--~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q  458 (700)
T KOG2137|consen  383 PEEVKE--KILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ  458 (700)
T ss_pred             hHHHHH--HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH
Confidence            444544  689999999999999999999999988776544  3444556777777765544478899999999998882


Q ss_pred             cchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCC-hhhHHHHHHHHHH
Q 044293          123 LDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTE-AEDLAGTSLAVLN  201 (236)
Q Consensus       123 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~-~~~~~~~a~~~L~  201 (236)
                      .-+ +..+  ..-++++.+-.+..++..+-..+++..++.....+...+....++|.++-+...+. .-+-....+..+.
T Consensus       459 ~lD-~~~v--~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i~  535 (700)
T KOG2137|consen  459 RLD-KAAV--LDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEIR  535 (700)
T ss_pred             HHH-HHHh--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccHHHHHHHHHHHH
Confidence            211 2222  34456666666677777777777777777764433344455678888888876542 1122234455555


Q ss_pred             HHcC
Q 044293          202 LLAR  205 (236)
Q Consensus       202 ~l~~  205 (236)
                      .+..
T Consensus       536 ~ml~  539 (700)
T KOG2137|consen  536 LMLS  539 (700)
T ss_pred             HHHh
Confidence            5544

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.58  E-value=6  Score=36.16  Aligned_cols=133  Identities=18%  Similarity=0.148  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHH-HhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHH
Q 044293           22 YEDQQKALQTLAS-ITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWI  100 (236)
Q Consensus        22 ~~~~~~a~~~L~~-l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~l  100 (236)
                      ++....-+..... ...++|+. ..++.  |.+..++..+.+++..+|..++.+|+-+...-...+...-+|.+..|..-
T Consensus        64 ~dRil~fl~~f~~Y~~~~dpeg-~~~V~--~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R  140 (885)
T COG5218          64 PDRILSFLKRFFEYDMPDDPEG-EELVA--GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSER  140 (885)
T ss_pred             HHHHHHHHHHHHHhcCCCChhh-hHHHH--HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            4433333333333 33344554 44443  78888888899999999999999998877654444456667888888887


Q ss_pred             HhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC-CCcHHHHHHHHHHHHHhcCC
Q 044293          101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA-PSNPAGHHLLSSLAELVQFH  165 (236)
Q Consensus       101 L~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~  165 (236)
                      +-.- .+-++..|..+|+++-....|-.-    .....|+.+++. ++..+++.|   |.|+..++
T Consensus       141 ~~DR-E~~VR~eAv~~L~~~Qe~~~neen----~~~n~l~~~vqnDPS~EVRr~a---llni~vdn  198 (885)
T COG5218         141 LFDR-EKAVRREAVKVLCYYQEMELNEEN----RIVNLLKDIVQNDPSDEVRRLA---LLNISVDN  198 (885)
T ss_pred             Hhcc-hHHHHHHHHHHHHHHHhccCChHH----HHHHHHHHHHhcCcHHHHHHHH---HHHeeeCC
Confidence            6655 578999999999988765543322    233466667765 455565544   34544433

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=92.57  E-value=1  Score=31.00  Aligned_cols=94  Identities=15%  Similarity=0.098  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHh
Q 044293           23 EDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQ  102 (236)
Q Consensus        23 ~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~  102 (236)
                      ++|..|+.-+..=-.++--.-..+.+..+.+..|+..++.+.....+.++..+..+..+|.....+.+-|+...|.++=.
T Consensus         2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~   81 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP   81 (98)
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence            56676766654322221111222232237788888888877767788999999999999999999999999988666654


Q ss_pred             ccCCHHHHHHHHHHH
Q 044293          103 SSSSQETVKLASSLI  117 (236)
Q Consensus       103 ~~~~~~~~~~a~~~L  117 (236)
                      .. +++.+...-.++
T Consensus        82 ~~-~~~~~~~id~il   95 (98)
T PF14726_consen   82 NV-EPNLQAEIDEIL   95 (98)
T ss_pred             cC-CHHHHHHHHHHH
Confidence            44 566655554444

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=92.57  E-value=0.4  Score=38.49  Aligned_cols=80  Identities=18%  Similarity=0.168  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhhCCCCchhHHhhhccc-------HHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhh-hhc-ccCcHH
Q 044293           67 IRTLSLSILLNLSLNPDLKQSLASMET-------IYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKA-RFG-VAGTVQ  137 (236)
Q Consensus        67 ~~~~a~~~L~~l~~~~~~~~~i~~~g~-------i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~-~i~-~~g~i~  137 (236)
                      -|+-|+.+|+.|+..+.|-+.+...+-       ...|+++|...+++-.++-|...|.+|+..++.-. .+. +.+.|.
T Consensus       140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~  219 (257)
T PF12031_consen  140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS  219 (257)
T ss_pred             HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence            378999999999999999888876543       33344444444488999999999999999875443 333 489999


Q ss_pred             HHHHhhcCC
Q 044293          138 VLVKAVSAP  146 (236)
Q Consensus       138 ~Lv~lL~~~  146 (236)
                      .|+.++.+.
T Consensus       220 ~Li~FiE~a  228 (257)
T PF12031_consen  220 HLIAFIEDA  228 (257)
T ss_pred             HHHHHHHHH
Confidence            999999644

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=92.39  E-value=5.9  Score=33.24  Aligned_cols=216  Identities=13%  Similarity=0.126  Sum_probs=139.8

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHH----HHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQY----RSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD   83 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~----~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~   83 (236)
                      +....+++.+...+-+.+..++....++-..+-+.    .+.+...+..+..|+.--.. .+++--.+-..+..+..++.
T Consensus        79 ~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcirhe~  157 (342)
T KOG1566|consen   79 DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIRHEF  157 (342)
T ss_pred             CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHhhHH
Confidence            35566677776666666666666555554332111    22233222344444433111 24554445556677788887


Q ss_pred             hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc-cchhhhhhccc----CcHHHHHHhhcCCCcHHHHHHHHHH
Q 044293           84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM-LDKNKARFGVA----GTVQVLVKAVSAPSNPAGHHLLSSL  158 (236)
Q Consensus        84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~----g~i~~Lv~lL~~~~~~~~~~a~~aL  158 (236)
                      -...+....-........+.+ +-++...|..+...+-. +......+...    -..+.--+++.++|.-+++.+.+.|
T Consensus       158 LakiiL~s~~~~~FF~~vq~p-~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kll  236 (342)
T KOG1566|consen  158 LAKIILESTNFEKFFLYVQLP-NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLL  236 (342)
T ss_pred             HHHHHHcchhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhH
Confidence            767777777888888888888 78898899999886644 33333444332    2244466888999999999999999


Q ss_pred             HHHhcCCCChHHHHH----hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh----hHHHHHhcCCcHHHHHHHhhC
Q 044293          159 AELVQFHGNSTLAVR----AGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE----GMIALTKTDQIVSLMVDVLKG  229 (236)
Q Consensus       159 ~~L~~~~~~~~~~~~----~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~----~~~~i~~~g~~i~~lv~~l~~  229 (236)
                      +.+-....|...|.+    ...+..++.+|++.+ ..++-.|.-+......+|.    .+..++..   -+.|++++..
T Consensus       237 g~llldr~N~~~M~kYiss~enLKlmM~llrdks-kniQ~eAFhvFKvfvAnpnK~q~V~~IL~~N---r~KLl~~l~~  311 (342)
T KOG1566|consen  237 GELLLDRSNSAVMTKYISSPENLKLMMNLLRDKS-KNIQLEAFHVFKVFVANPNKPQPVRDILVRN---RPKLLELLHD  311 (342)
T ss_pred             HHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCcc-ccchHHHHHHHHHHhcCCCCCchHHHHHHhC---cHHHHHHHHH
Confidence            999998888766654    367888999999874 6788888888877665542    33334432   2677776654

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=92.30  E-value=7.7  Score=34.36  Aligned_cols=185  Identities=15%  Similarity=0.142  Sum_probs=107.3

Q ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCCchh
Q 044293            9 TINNCVSRSQSD-SYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNPDLK   85 (236)
Q Consensus         9 ~i~~lv~~L~~~-~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~   85 (236)
                      .|..+++-++.+ ..+.+..|+..|..+..+ +-..++....  -++..+++.|+. .++..+..|+++|..++.+...|
T Consensus       287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~--~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~  364 (516)
T KOG2956|consen  287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA--EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR  364 (516)
T ss_pred             HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence            444455555433 455677788867665554 3445554443  368888888876 67788899999999988765443


Q ss_pred             HHhhhcccHHHHHHHHhccCCHHHHHHHHHH-HHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293           86 QSLASMETIYRLNWIIQSSSSQETVKLASSL-ICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF  164 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~-L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~  164 (236)
                      -.=...-.|..+++.-+.. ..++...|.-. +.-++...- -.      .|..+..++...+.+.-..++..+..++..
T Consensus       365 l~DstE~ai~K~Leaa~ds-~~~v~~~Aeed~~~~las~~P-~~------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~  436 (516)
T KOG2956|consen  365 LFDSTEIAICKVLEAAKDS-QDEVMRVAEEDCLTTLASHLP-LQ------CIVNISPLILTADEPRAVAVIKMLTKLFER  436 (516)
T ss_pred             hhchHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHhhCc-hh------HHHHHhhHHhcCcchHHHHHHHHHHHHHhh
Confidence            2211233566666665555 45555544433 333443331 11      233344445455555555666666666653


Q ss_pred             CCChHHH-HHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          165 HGNSTLA-VRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       165 ~~~~~~~-~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                      -..-..+ +-.+..|.+++--.+.+ ..+++.|+.+|..+.
T Consensus       437 l~~EeL~~ll~diaP~~iqay~S~S-S~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  437 LSAEELLNLLPDIAPCVIQAYDSTS-STVRKTAVFCLVAMV  476 (516)
T ss_pred             cCHHHHHHhhhhhhhHHHHHhcCch-HHhhhhHHHhHHHHH
Confidence            3222222 23578888998888763 567777777666554

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.10  E-value=4.6  Score=37.80  Aligned_cols=146  Identities=12%  Similarity=0.092  Sum_probs=97.3

Q ss_pred             HHHHHHHhhCCCCch-hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch-hhhhhcc-cCcHHHHHHhhcCC
Q 044293           70 LSLSILLNLSLNPDL-KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK-NKARFGV-AGTVQVLVKAVSAP  146 (236)
Q Consensus        70 ~a~~~L~~l~~~~~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~-~g~i~~Lv~lL~~~  146 (236)
                      .++.++.||+..++. |..+.+.-+++.+-..+... ++-.+..++..+.||...+. ...-+++ ...++.....+...
T Consensus       561 E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~  639 (748)
T KOG4151|consen  561 EALEALTNLASISESDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA  639 (748)
T ss_pred             HHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh
Confidence            567788888888765 77777665666655555555 78888899999999988773 4555665 66677777777665


Q ss_pred             CcHHHHHHHHHHHHHhcCCCC-hHHHHH-hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcC
Q 044293          147 SNPAGHHLLSSLAELVQFHGN-STLAVR-AGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTD  217 (236)
Q Consensus       147 ~~~~~~~a~~aL~~L~~~~~~-~~~~~~-~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g  217 (236)
                      ..+....++.++..+....+| |..+.+ ......++.++.+.+ .++++.-+.+..|+.. ..+..+.+....
T Consensus       640 ~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~-~~~qhrgl~~~ln~~~~~~ei~~~~~~~~  712 (748)
T KOG4151|consen  640 DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDED-DEIQHRGLVIILNLFEALFEIAEKIFETE  712 (748)
T ss_pred             hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCch-hhhhhhhhhhhhhHHHHHHHHHHHhccch
Confidence            555556666666655554333 332333 466677888888874 6788777777777554 335555555554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=91.94  E-value=11  Score=35.53  Aligned_cols=169  Identities=15%  Similarity=0.140  Sum_probs=108.7

Q ss_pred             HHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhhCCCCchhHHhhhcccHH--HHHHHHhccCCH
Q 044293           31 TLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNLSLNPDLKQSLASMETIY--RLNWIIQSSSSQ  107 (236)
Q Consensus        31 ~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~--~L~~lL~~~~~~  107 (236)
                      +|++.+.+++++-+.+.+. |+...+...+... ..+.+..++..+.|++...+.+........+.  .+-.++..-++.
T Consensus       494 ~l~~~t~~~~~~C~~~l~~-~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDN-GGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhc-ccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence            7889999999999999998 9999999999754 56788999999999998876655443222222  333333333123


Q ss_pred             HHHHHHHHHHHHhcccchhhhh----------h--------------cccCcHHH-HHHhhcC-CCcHHHHHHHHHHHHH
Q 044293          108 ETVKLASSLICSLAMLDKNKAR----------F--------------GVAGTVQV-LVKAVSA-PSNPAGHHLLSSLAEL  161 (236)
Q Consensus       108 ~~~~~a~~~L~~Ls~~~~~~~~----------i--------------~~~g~i~~-Lv~lL~~-~~~~~~~~a~~aL~~L  161 (236)
                      +.--+|++.|..+..+.+....          +              .....+.+ +.+++.. ..+..+-.|++++.++
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~  652 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV  652 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence            6666788888877654221100          0              01122222 4444443 3455678889999998


Q ss_pred             hc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHH
Q 044293          162 VQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVL  200 (236)
Q Consensus       162 ~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L  200 (236)
                      .. .+++++...+.|+++.+...-.......+.+.+..++
T Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  692 (699)
T KOG3665|consen  653 LEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI  692 (699)
T ss_pred             HHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence            87 5677888888999888877765432233444444333

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=91.74  E-value=3.4  Score=35.63  Aligned_cols=93  Identities=19%  Similarity=0.205  Sum_probs=66.6

Q ss_pred             cHHHHHhhccCC-ChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc-cchhhhh
Q 044293           52 AISTLLGLSKSS-SPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM-LDKNKAR  129 (236)
Q Consensus        52 ~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~  129 (236)
                      -|..+++=+.+. ...+|..++--|+.-+.+++.+..+...|....+++.+....+......++.+++.+-. +..+-..
T Consensus        22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   22 EVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            377777777643 34677788888888888999999999999999999999543234366666666665544 4444444


Q ss_pred             hcccCcHHHHHHhhc
Q 044293          130 FGVAGTVQVLVKAVS  144 (236)
Q Consensus       130 i~~~g~i~~Lv~lL~  144 (236)
                      +.+.+....+++++.
T Consensus       102 ~~~~~~~~ll~~Ll~  116 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLK  116 (361)
T ss_pred             hhchhHHHHHHHHhc
Confidence            445677777788887

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.73  E-value=3.8  Score=36.35  Aligned_cols=150  Identities=13%  Similarity=0.062  Sum_probs=88.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHh-hccCCChHHHHHHHHHHHhhCCCCch---
Q 044293            9 TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLG-LSKSSSPIIRTLSLSILLNLSLNPDL---   84 (236)
Q Consensus         9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~l~~~~~~---   84 (236)
                      ++..+-...++++...+..|+..|.+.+..-|+..+.....  .+..++. +.+..+.+++-.+..+|.-+...-.+   
T Consensus       259 ~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~--~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l  336 (533)
T KOG2032|consen  259 VLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT--QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL  336 (533)
T ss_pred             HHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH--HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence            33344444457778889999999999998855544433332  4444443 34445677777777777655443333   


Q ss_pred             hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhh--cc--cCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293           85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARF--GV--AGTVQVLVKAVSAPSNPAGHHLLSSLAE  160 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i--~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~  160 (236)
                      ...+.  +.--.+..+.++. +++++..|..+...|+.....+...  .+  .+...+++-.|+++++.+ -.|+++...
T Consensus       337 ~~~~l--~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~  412 (533)
T KOG2032|consen  337 ESYLL--NIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELR  412 (533)
T ss_pred             hhhch--hHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHH
Confidence            22222  2223455566666 7899988888877777665433332  22  344556777777777644 455555555


Q ss_pred             HhcC
Q 044293          161 LVQF  164 (236)
Q Consensus       161 L~~~  164 (236)
                      .|..
T Consensus       413 ~c~p  416 (533)
T KOG2032|consen  413 TCYP  416 (533)
T ss_pred             hcCc
Confidence            4443

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=91.73  E-value=6.5  Score=32.30  Aligned_cols=197  Identities=17%  Similarity=0.178  Sum_probs=105.6

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhcC----ChHHHHHHHhc-----c-CcHHHHHhh----ccCCChHHHHHHHHHHHhhC
Q 044293           14 VSRSQSDSYEDQQKALQTLASITRV----SPQYRSLLAQT-----D-GAISTLLGL----SKSSSPIIRTLSLSILLNLS   79 (236)
Q Consensus        14 v~~L~~~~~~~~~~a~~~L~~l~~~----~~~~~~~i~~~-----~-g~i~~Lv~l----L~~~~~~~~~~a~~~L~~l~   79 (236)
                      +..|.+..+.+-..|+..|..+...    ++..++.+.+.     + |..+-+..+    |.+.  ...+.++.+|..+.
T Consensus        13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss--~t~e~tl~lL~~L~   90 (262)
T PF14225_consen   13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSS--STYELTLRLLSRLT   90 (262)
T ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCC--CcHHHHHHHHHHHh
Confidence            4556666666666666666655432    22333333221     1 333333333    3332  34556777777776


Q ss_pred             CCCch--------hHHhhhcccHHHHHHHHhccCC----HHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCC
Q 044293           80 LNPDL--------KQSLASMETIYRLNWIIQSSSS----QETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPS  147 (236)
Q Consensus        80 ~~~~~--------~~~i~~~g~i~~L~~lL~~~~~----~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~  147 (236)
                      ..+++        |-.+.-.+.+|.++..+..+ +    .+....+|..|..+|....       .+.+..++.....+.
T Consensus        91 ~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~-~~i~~~~~~~~~A~~La~~a~~~~-------~~~La~il~~ya~~~  162 (262)
T PF14225_consen   91 PLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDP-NPIQPDQECIEIAEALAQVAEAQG-------LPNLARILSSYAKGR  162 (262)
T ss_pred             cCCCccccCCCCccHHHHHHHHHHHHHHHhccc-ccccccHHHHHHHHHHHHHHHhCC-------CccHHHHHHHHHhcC
Confidence            65433        33333345677777777766 3    1344566777787773321       233444444443332


Q ss_pred             cH----HHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHH
Q 044293          148 NP----AGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLM  223 (236)
Q Consensus       148 ~~----~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~l  223 (236)
                      .+    ....++.+|+.-.. ++.     ....+..++.+|..+. +-++...+.+|..+-.+.+.+.. ...+ ++.++
T Consensus       163 fr~~~dfl~~v~~~l~~~f~-P~~-----~~~~l~~Ll~lL~n~~-~w~~~~~L~iL~~ll~~~d~~~~-~~~d-lispl  233 (262)
T PF14225_consen  163 FRDKDDFLSQVVSYLREAFF-PDH-----EFQILTFLLGLLENGP-PWLRRKTLQILKVLLPHVDMRSP-HGAD-LISPL  233 (262)
T ss_pred             CCCHHHHHHHHHHHHHHHhC-chh-----HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhccccCCCC-cchH-HHHHH
Confidence            22    23333344332221 111     2244567888887763 67888899999988877666555 2222 67888


Q ss_pred             HHHhhC
Q 044293          224 VDVLKG  229 (236)
Q Consensus       224 v~~l~~  229 (236)
                      +++++.
T Consensus       234 lrlL~t  239 (262)
T PF14225_consen  234 LRLLQT  239 (262)
T ss_pred             HHHhCC
Confidence            887764

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=91.59  E-value=2  Score=31.32  Aligned_cols=72  Identities=14%  Similarity=0.207  Sum_probs=58.8

Q ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccCCC--hHHHHHHHHHHHhh
Q 044293            6 VRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKSSS--PIIRTLSLSILLNL   78 (236)
Q Consensus         6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~l   78 (236)
                      ..+.+..+.+.|+++++.++..|+..|-.+..+ .......+... +++..|+.+++...  +.++..++..+..-
T Consensus        35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~-~fl~~L~~l~~~~~~~~~Vk~kil~li~~W  109 (133)
T smart00288       35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASK-EFLNELVKLIKPKYPLPLVKKRILELIQEW  109 (133)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence            467888999999999999999999999988887 46677888876 89999999987643  34888888877654

Unpublished observations. Domain of unknown function.

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.56  E-value=12  Score=36.18  Aligned_cols=140  Identities=12%  Similarity=0.082  Sum_probs=84.7

Q ss_pred             hHHHhHHHHHHHHhc------CCC--HHHHHHHHHHHHHHhc---CChHHHHHHHhccCcHHHHHhhccCCChHHHHHHH
Q 044293            4 PRVRETINNCVSRSQ------SDS--YEDQQKALQTLASITR---VSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSL   72 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~------~~~--~~~~~~a~~~L~~l~~---~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~   72 (236)
                      |..++.++.+++-|.      .++  +.-...|+..+..++.   .....+..+...  .+..+...++++-.-.|..|+
T Consensus       406 e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f--lv~hVfP~f~s~~g~Lrarac  483 (1010)
T KOG1991|consen  406 ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF--LVNHVFPEFQSPYGYLRARAC  483 (1010)
T ss_pred             hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH--HHHHhhHhhcCchhHHHHHHH
Confidence            456778888888886      222  2233446666666652   222334444332  556666677888888899999


Q ss_pred             HHHHhhCCCC-chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcc--cCcHHHHHHhhcCCC
Q 044293           73 SILLNLSLNP-DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGV--AGTVQVLVKAVSAPS  147 (236)
Q Consensus        73 ~~L~~l~~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~--~g~i~~Lv~lL~~~~  147 (236)
                      +++..++.-+ .+...+  ..++......|.++.+.-++..|+-+|.-+-.+. .....+..  .+.++.|+++.+.-+
T Consensus       484 ~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E  560 (1010)
T KOG1991|consen  484 WVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE  560 (1010)
T ss_pred             HHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc
Confidence            9999888422 111111  2345566666764436778888888888665444 33333433  567777777777543

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=91.08  E-value=4.4  Score=30.55  Aligned_cols=148  Identities=13%  Similarity=0.143  Sum_probs=80.9

Q ss_pred             hHHHhHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC
Q 044293            4 PRVRETINNCVSRSQSD-SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP   82 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~   82 (236)
                      .+.++..+.|...|+++ ++++|+++++.|..+..-+|...+.+...   .+.-.  -...+.....   ..+.+....+
T Consensus         6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~---~~~~~--~~~~~~~~~~---~~l~~~~~~~   77 (160)
T PF11865_consen    6 LDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS---LDSKS--SENSNDESTD---ISLPMMGISP   77 (160)
T ss_pred             HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc---CCccc--cccccccchh---hHHhhccCCC
Confidence            35677888999999854 68899999999999988877654434332   11000  0011111111   1222222211


Q ss_pred             chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhh-hhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293           83 DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNK-ARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL  161 (236)
Q Consensus        83 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L  161 (236)
                       .-....-...+..|+++|+...-..-...+..++.++-.....+ .... .-.+|.++..+++.++..++....-|..|
T Consensus        78 -~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~l  155 (160)
T PF11865_consen   78 -SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADL  155 (160)
T ss_pred             -chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence             12222233467788888886522222233445554443322212 1111 57889999999977766666655555544

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=90.97  E-value=0.45  Score=39.86  Aligned_cols=74  Identities=16%  Similarity=0.145  Sum_probs=62.4

Q ss_pred             hHHHhHHHHHHHHhcCCCHH-HHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhh
Q 044293            4 PRVRETINNCVSRSQSDSYE-DQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNL   78 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~~~~-~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l   78 (236)
                      ++-.+.+..|...++.+++. ..+-|+.-+..+....|+.+..+.+- |+=+.+.+++++++++++-.|+.++..+
T Consensus       352 kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Ky-g~k~~im~L~nh~d~~VkfeAl~a~q~~  426 (432)
T COG5231         352 KDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKY-GVKEIIMNLINHDDDDVKFEALQALQTC  426 (432)
T ss_pred             hhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHh-hhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence            45567888999999877665 44557788888888889999999998 9999999999999999999999988654

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=90.94  E-value=11  Score=36.73  Aligned_cols=211  Identities=15%  Similarity=0.072  Sum_probs=123.7

Q ss_pred             hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCC-hHHHHHHHHHHHhhCCCC
Q 044293            4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSS-PIIRTLSLSILLNLSLNP   82 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~   82 (236)
                      +-++..|..|.+.|++.+..++-.|++-+..++...|   ..++.  .+|...+++++..+ +..--.++-+|+.++.-.
T Consensus       337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad--~vi~svid~~~p~e~~~aWHgacLaLAELA~rG  411 (1133)
T KOG1943|consen  337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD--QVIGSVIDLFNPAEDDSAWHGACLALAELALRG  411 (1133)
T ss_pred             HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH--HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence            3345667777777778888888889999999988765   33443  47778888776544 455567888888887633


Q ss_pred             chhHHhhhcccHHHHHHHHhcc-------CCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHH-----HhhcCCCcHH
Q 044293           83 DLKQSLASMETIYRLNWIIQSS-------SSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLV-----KAVSAPSNPA  150 (236)
Q Consensus        83 ~~~~~i~~~g~i~~L~~lL~~~-------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv-----~lL~~~~~~~  150 (236)
                      --..... ...+|.+++-|.-.       .-..+|..|+-++|.++...+....   .+.+..|.     ..+-+....+
T Consensus       412 lLlps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l---~p~l~~L~s~LL~~AlFDrevnc  487 (1133)
T KOG1943|consen  412 LLLPSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDL---KPVLQSLASALLIVALFDREVNC  487 (1133)
T ss_pred             CcchHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhh---hHHHHHHHHHHHHHHhcCchhhH
Confidence            2222111 24566666655422       1346788888888888776542211   12333233     3334555567


Q ss_pred             HHHHHHHHHHHhcCCC---------------------C-----hHHHHH-hCcHHHHHHHhcCC---C-hhhHHHHHHHH
Q 044293          151 GHHLLSSLAELVQFHG---------------------N-----STLAVR-AGAVSELIHLIGST---E-AEDLAGTSLAV  199 (236)
Q Consensus       151 ~~~a~~aL~~L~~~~~---------------------~-----~~~~~~-~g~i~~lv~ll~~~---~-~~~~~~~a~~~  199 (236)
                      ++.|..|+-....-..                     |     +..+.+ .|-..++++-+...   . +..+++.+..+
T Consensus       488 RRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~a  567 (1133)
T KOG1943|consen  488 RRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYA  567 (1133)
T ss_pred             hHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence            7888888755432111                     1     122222 34455566655443   1 46788999999


Q ss_pred             HHHHcC-ChhhHHHHHhcCCcHHHHHHHhh
Q 044293          200 LNLLAR-FDEGMIALTKTDQIVSLMVDVLK  228 (236)
Q Consensus       200 L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~  228 (236)
                      |..|+. .|+    ....+ ..++++...-
T Consensus       568 L~~Ls~~~pk----~~a~~-~L~~lld~~l  592 (1133)
T KOG1943|consen  568 LHKLSLTEPK----YLADY-VLPPLLDSTL  592 (1133)
T ss_pred             HHHHHHhhHH----hhccc-chhhhhhhhc
Confidence            988764 233    23323 4566666443

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=90.67  E-value=11  Score=34.38  Aligned_cols=39  Identities=15%  Similarity=0.123  Sum_probs=33.8

Q ss_pred             CchHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh
Q 044293            2 SAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSP   40 (236)
Q Consensus         2 ~~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~   40 (236)
                      +.+++.++|..|-.+|++.....|..|.+.|..++-..|
T Consensus       297 ~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P  335 (898)
T COG5240         297 GSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP  335 (898)
T ss_pred             CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence            567788999999999999988899999999999887655

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=90.59  E-value=2.7  Score=31.88  Aligned_cols=113  Identities=18%  Similarity=0.177  Sum_probs=72.0

Q ss_pred             hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHh-ccCcHHHHHhhccCCCh-HHHHHHHHHHHhh---
Q 044293            4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQ-TDGAISTLLGLSKSSSP-IIRTLSLSILLNL---   78 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~l---   78 (236)
                      .++...+.++.++|+++++..+-.++..+...+.++.  .+.|.+ ..-++..++..|+.+++ .+.+.++.+|..+   
T Consensus        21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~   98 (165)
T PF08167_consen   21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL   98 (165)
T ss_pred             HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            4567778888899999898888888888888877531  344422 23578889999987654 4455566655543   


Q ss_pred             -CCCCchhHHhhh---cccHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 044293           79 -SLNPDLKQSLAS---METIYRLNWIIQSSSSQETVKLASSLICSLA  121 (236)
Q Consensus        79 -~~~~~~~~~i~~---~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls  121 (236)
                       ...++..+.+..   .+.++.++.+++.   ......+..+|..+-
T Consensus        99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll  142 (165)
T PF08167_consen   99 IRGKPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLL  142 (165)
T ss_pred             hcCCCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHH
Confidence             444554444432   3566666666653   244555555555543

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=90.37  E-value=13  Score=35.67  Aligned_cols=179  Identities=14%  Similarity=0.083  Sum_probs=108.6

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc----CCChHHHHHHHHHHHhhCCCCchhHHh
Q 044293           13 CVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK----SSSPIIRTLSLSILLNLSLNPDLKQSL   88 (236)
Q Consensus        13 lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~----~~~~~~~~~a~~~L~~l~~~~~~~~~i   88 (236)
                      +-..+.+++...+.+|++.+.....+..  .+  ... |....+..++.    ..+..+.-.++..|..++..-.....=
T Consensus       258 l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~--~~~-~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~  332 (815)
T KOG1820|consen  258 LETEMLSKKWKDRKEALEELVAILEEAK--KE--IVK-GYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK  332 (815)
T ss_pred             HHHhhhccchHHHHHHHHHHHHHHhccc--cc--ccc-CcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence            3344457888899999999988877532  11  122 44444433332    234455666777777776642211111


Q ss_pred             hhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC-C-C
Q 044293           89 ASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF-H-G  166 (236)
Q Consensus        89 ~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~-~-~  166 (236)
                      ...+..+.|++.+... ...++..+..++-..+..      ..-...++.+...+..+++..+..+...+...-.. + .
T Consensus       333 ~~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~  405 (815)
T KOG1820|consen  333 YAKNVFPSLLDRLKEK-KSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK  405 (815)
T ss_pred             HHHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence            1346778888888765 456665555554433331      11145578888899999998887776666544432 2 2


Q ss_pred             ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          167 NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       167 ~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                      ....-.-.+++|.++...++.+ .++++.+..++.-+.
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~~-~~VR~Aa~e~~~~v~  442 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDTD-KDVRKAALEAVAAVM  442 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCCc-HHHHHHHHHHHHHHH
Confidence            3333333578899999998875 678888777776554

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=90.13  E-value=2.4  Score=32.18  Aligned_cols=110  Identities=17%  Similarity=0.130  Sum_probs=72.1

Q ss_pred             CcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhh--cccHHHHHHHHhccCCHHHHHHHHHHHHHhccc----c
Q 044293           51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLAS--METIYRLNWIIQSSSSQETVKLASSLICSLAML----D  124 (236)
Q Consensus        51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~----~  124 (236)
                      ..+..+..+|++++++-+-.++..+...+.... ...+.+  .-.+..++.+|+..+...+++.+..+|..+...    +
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            467778889999888877777777766555322 344433  347888889998875677888888887766433    3


Q ss_pred             hhhhhhcc---cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293          125 KNKARFGV---AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus       125 ~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~  163 (236)
                      +..+++..   .++++.+++++.+  ......++.+|..+-.
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP  143 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence            43444432   4556666666654  3556677777766654

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.01  E-value=14  Score=37.42  Aligned_cols=196  Identities=10%  Similarity=0.024  Sum_probs=107.7

Q ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChH-HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            9 TINNCVSRSQSD-SYEDQQKALQTLASITRVSPQ-YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         9 ~i~~lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      .|=+++++-+++ ....+..|+--+..++...-+ .+..+.   -.||.|.++=-.+++.+|.....+=..|..++.+--
T Consensus       957 LVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~---kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v 1033 (1702)
T KOG0915|consen  957 LVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLK---KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV 1033 (1702)
T ss_pred             HHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHH---HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH
Confidence            444455555432 344555555555555544222 233332   357777777556677777544444444555544322


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHH---HHHHHHHHHh
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGH---HLLSSLAELV  162 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~---~a~~aL~~L~  162 (236)
                      .-.-+..+.-|+.-|.+. .--+|+.++.+|.-|-....+-+.... ...-..+++.+.+-...+++   .++++|..||
T Consensus      1034 d~y~neIl~eLL~~lt~k-ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1034 DEYLNEILDELLVNLTSK-EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred             HHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222245566666655544 456889999999988776544333322 34555566666554444553   5566777766


Q ss_pred             c---C--CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh
Q 044293          163 Q---F--HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE  208 (236)
Q Consensus       163 ~---~--~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~  208 (236)
                      .   +  +..+..-.-..++|.+++-=--++-.+++..++.++.-|+.+..
T Consensus      1113 vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg 1163 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG 1163 (1702)
T ss_pred             hhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch
Confidence            4   1  11222222345566665521112356889999999999986543

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.94  E-value=3.7  Score=40.22  Aligned_cols=142  Identities=14%  Similarity=0.061  Sum_probs=101.6

Q ss_pred             cHHHHHhhccC----CChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhh
Q 044293           52 AISTLLGLSKS----SSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNK  127 (236)
Q Consensus        52 ~i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~  127 (236)
                      ..|.++...++    ++|++|..|.-+|+-+..-+..   +. .--+|.|+..+....++-++-++..++.-|+..--|-
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~---fc-es~l~llftimeksp~p~IRsN~VvalgDlav~fpnl  995 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE---FC-ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL  995 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH---HH-HHHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence            56667776643    4789998888888865443321   11 2357889999985447889999999988877643221


Q ss_pred             hhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293          128 ARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       128 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~  206 (236)
                         .+ -.-+.|...|++.++.+++.|+.+|.+|-..+..+.    .|.++-+...+.+++ +++...|=.-+..|+..
T Consensus       996 ---ie-~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKV----KGql~eMA~cl~D~~-~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen  996 ---IE-PWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKV----KGQLSEMALCLEDPN-AEISDLAKSFFKELSSK 1065 (1251)
T ss_pred             ---cc-hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHh----cccHHHHHHHhcCCc-HHHHHHHHHHHHHhhhc
Confidence               12 234778888999999999999999999988654433    589999999998884 77877776555555543

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=89.91  E-value=11  Score=34.37  Aligned_cols=184  Identities=10%  Similarity=0.078  Sum_probs=109.3

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-----------ch--
Q 044293           18 QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-----------DL--   84 (236)
Q Consensus        18 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-----------~~--   84 (236)
                      +.++.++|..|.-+|.++..-+...-+...|. -..........+++.++...+...-..+|..+           +.  
T Consensus       231 q~~d~e~q~aafgCl~kim~LyY~fm~~ymE~-aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~  309 (858)
T COG5215         231 QGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN-ALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPA  309 (858)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCch
Confidence            56788899988888887765444444444444 45555667788888887666665543333211           10  


Q ss_pred             -hHHh---hhcccHHHHHHHHhcc-C-----CHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHH
Q 044293           85 -KQSL---ASMETIYRLNWIIQSS-S-----SQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHL  154 (236)
Q Consensus        85 -~~~i---~~~g~i~~L~~lL~~~-~-----~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a  154 (236)
                       -..+   .-.+.+|.|+.+|... .     +=.....|.++|--.+....  ..|.+. .+...=+-+++++-.-++.+
T Consensus       310 qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--d~i~~p-Vl~FvEqni~~~~w~nreaa  386 (858)
T COG5215         310 QNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--DKIMRP-VLGFVEQNIRSESWANREAA  386 (858)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh--hHhHHH-HHHHHHHhccCchhhhHHHH
Confidence             0011   1346899999999862 1     11233445566555555442  223332 33333355666666667888


Q ss_pred             HHHHHHHhcCC-CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293          155 LSSLAELVQFH-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       155 ~~aL~~L~~~~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~  206 (236)
                      +.+++..-..+ +.+..-+-..++|.+...+.++. --+++.+++++..++.+
T Consensus       387 vmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~-l~vk~ttAwc~g~iad~  438 (858)
T COG5215         387 VMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSC-LWVKSTTAWCFGAIADH  438 (858)
T ss_pred             HHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccce-eehhhHHHHHHHHHHHH
Confidence            88887665544 22333344678899999998763 45667777778777644

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=89.31  E-value=2.2  Score=31.39  Aligned_cols=73  Identities=19%  Similarity=0.241  Sum_probs=58.7

Q ss_pred             hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhhccCC-ChH---HHHHHHHHHHh
Q 044293            4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGLSKSS-SPI---IRTLSLSILLN   77 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~-~~~---~~~~a~~~L~~   77 (236)
                      ....+.+..|.+.|+++++.++..|+..|-.+..+. +.....+... .++..|..++.+. ...   +++.++..+..
T Consensus        38 ~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~-~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~  115 (140)
T PF00790_consen   38 DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASK-EFLDELVKLIKSKKTDPETPVKEKILELLQE  115 (140)
T ss_dssp             THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH-HHHHHHHHHHHHTTTHHHSHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHH-HHHHHHHHHHccCCCCchhHHHHHHHHHHHH
Confidence            455788999999999999999999999999988874 5677888776 8999999987643 333   78888877764

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=89.26  E-value=7.2  Score=37.25  Aligned_cols=128  Identities=12%  Similarity=0.124  Sum_probs=91.0

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhc--ccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHH
Q 044293           96 RLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG--VAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVR  173 (236)
Q Consensus        96 ~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~  173 (236)
                      ..+..+.....+-++..|..+++.-+...    .+.  ..+++..|.++....+.++..-...+|+..|..+.......+
T Consensus       494 ~~v~~l~~~~~~~~ki~a~~~~~~~~~~~----vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~  569 (1005)
T KOG2274|consen  494 ATVNALTMDVPPPVKISAVRAFCGYCKVK----VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASME  569 (1005)
T ss_pred             HHHHhhccCCCCchhHHHHHHHHhccCce----eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhh
Confidence            33344443324556667777777666211    121  268888888888877778888888889888988877777788


Q ss_pred             hCcHHHHHHHhcC-CChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhC
Q 044293          174 AGAVSELIHLIGS-TEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKG  229 (236)
Q Consensus       174 ~g~i~~lv~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~  229 (236)
                      ....|..+.++.. +++|.+...+-.++..++...++...+.+.  ++|.++.++..
T Consensus       570 skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~--~iPslisil~~  624 (1005)
T KOG2274|consen  570 SKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQER--LIPSLISVLQL  624 (1005)
T ss_pred             cchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHH--HHHHHHHHHcC
Confidence            8899998888743 445778888888888888766666666553  47999998864

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.73  E-value=17  Score=32.46  Aligned_cols=146  Identities=9%  Similarity=-0.044  Sum_probs=86.4

Q ss_pred             CCChHHHHHHHHHHHhhCCC-CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHH---
Q 044293           62 SSSPIIRTLSLSILLNLSLN-PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQ---  137 (236)
Q Consensus        62 ~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~---  137 (236)
                      +++...+..|+..|.|.+.. |+-+.... .-.+..++.=|.++.+.++...+..+|.-...-..++...  .+.++   
T Consensus       269 dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~--~~~l~ial  345 (533)
T KOG2032|consen  269 DPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE--SYLLNIAL  345 (533)
T ss_pred             CchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh--hhchhHHH
Confidence            34557788999999998887 44333332 2345555555555547888888888888776655544432  33333   


Q ss_pred             HHHHhhcCCCcHHHHHHHHHHHHHhc--CCCChHHHHH--hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHH
Q 044293          138 VLVKAVSAPSNPAGHHLLSSLAELVQ--FHGNSTLAVR--AGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIA  212 (236)
Q Consensus       138 ~Lv~lL~~~~~~~~~~a~~aL~~L~~--~~~~~~~~~~--~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~  212 (236)
                      .+..+..+.+++.+..+...+..|+.  +.+.++-+.+  -+...+++-.+.+.. +.+ -.|++.....|.-.-.|++
T Consensus       346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~-p~v-a~ACr~~~~~c~p~l~rke  422 (533)
T KOG2032|consen  346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPN-PYV-ARACRSELRTCYPNLVRKE  422 (533)
T ss_pred             HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCC-hHH-HHHHHHHHHhcCchhHHHH
Confidence            34455567788888888888888876  3344444443  223334444455442 323 4566666666654444444

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=88.68  E-value=7.1  Score=36.26  Aligned_cols=137  Identities=15%  Similarity=0.147  Sum_probs=92.6

Q ss_pred             chHH-HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhh-ccCCChHHHHHHHHHHHhhCC
Q 044293            3 APRV-RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGL-SKSSSPIIRTLSLSILLNLSL   80 (236)
Q Consensus         3 ~~~~-~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~   80 (236)
                      +|++ +..+|.|..-+++++..+|..++..+..++..=   -..+++. -++|.+-++ +.+.+..++.+++.++..+. 
T Consensus       383 ~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~i---D~~~vk~-~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~-  457 (700)
T KOG2137|consen  383 PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESI---DVPFVKQ-AILPRLKNLAFKTTNLYVKVNVLPCLAGLI-  457 (700)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhc---cHHHHHH-HHHHHhhcchhcccchHHHHHHHHHHHHHH-
Confidence            3444 445555566667888899999999998887652   2444554 688888887 34556788888888888777 


Q ss_pred             CCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCC
Q 044293           81 NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPS  147 (236)
Q Consensus        81 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~  147 (236)
                        +..+...-.+-+.++.+..+.. ++.+.--...+..++.....+..++.....+|.++-+...+.
T Consensus       458 --q~lD~~~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  458 --QRLDKAAVLDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             --HHHHHHHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence              3333333334566677776666 788777777777777666654455556788888888776653

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=88.66  E-value=17  Score=36.88  Aligned_cols=140  Identities=12%  Similarity=0.077  Sum_probs=88.5

Q ss_pred             cCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch--hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhc-ccchh
Q 044293           50 DGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL--KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLA-MLDKN  126 (236)
Q Consensus        50 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~--~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls-~~~~~  126 (236)
                      .+.+..++.+|..+.+.+|..|+.+|.++...|..  ...-+..|....+.+    . ...+|+.|.-.+.... ..++.
T Consensus       815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~D----s-sasVREAaldLvGrfvl~~~e~  889 (1692)
T KOG1020|consen  815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLND----S-SASVREAALDLVGRFVLSIPEL  889 (1692)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhcc----c-hhHHHHHHHHHHhhhhhccHHH
Confidence            47888899999988899999999999998776543  233334555554443    3 6788888888887433 33322


Q ss_pred             hhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcC-CChhh-HHHHHHHHHHHHc
Q 044293          127 KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS-TEAED-LAGTSLAVLNLLA  204 (236)
Q Consensus       127 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~-~~~~~-~~~~a~~~L~~l~  204 (236)
                      -.+     ....+..=+.+....+++.+++.++.+|...++-..+.     ...++++.. .|.++ +++.+..++..+=
T Consensus       890 ~~q-----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~-----~~cakmlrRv~DEEg~I~kLv~etf~klW  959 (1692)
T KOG1020|consen  890 IFQ-----YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV-----DMCAKMLRRVNDEEGNIKKLVRETFLKLW  959 (1692)
T ss_pred             HHH-----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH-----HHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence            222     23344444455667899999999999998655433322     223333322 12223 6666666666653

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=88.24  E-value=12  Score=30.08  Aligned_cols=139  Identities=17%  Similarity=0.114  Sum_probs=88.6

Q ss_pred             HHHHHHHh-cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHh
Q 044293           10 INNCVSRS-QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSL   88 (236)
Q Consensus        10 i~~lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i   88 (236)
                      ++.|+..+ +..+++.+...+..|..++.++..+..      -++..|..+...+..+.+-.+...+..+....+-.-  
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~------~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP------PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh------HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH--
Confidence            34555544 467888999999999999987412222      356667777777766665566667766665443211  


Q ss_pred             hhcccHHHHHHHH--h-----c-c-CCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhh-cCCCcHHHHHHHHHH
Q 044293           89 ASMETIYRLNWII--Q-----S-S-SSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAV-SAPSNPAGHHLLSSL  158 (236)
Q Consensus        89 ~~~g~i~~L~~lL--~-----~-~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL  158 (236)
                         +.+..++..+  +     . + ...+.....+..+..++....+    .-...++.+...| .+.++..+..++.+|
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               4555444441  1     1 1 1234444456677777765544    2246788888888 677778889999999


Q ss_pred             HHHhc
Q 044293          159 AELVQ  163 (236)
Q Consensus       159 ~~L~~  163 (236)
                      ..||.
T Consensus       147 ~~Lc~  151 (234)
T PF12530_consen  147 APLCE  151 (234)
T ss_pred             HHHHH
Confidence            99993

>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []

Probab=88.14  E-value=10  Score=34.03  Aligned_cols=119  Identities=17%  Similarity=0.202  Sum_probs=76.5

Q ss_pred             hHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-chhHHh----hhcccHHHHHHHHhccCCHHHHHHHH
Q 044293           40 PQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DLKQSL----ASMETIYRLNWIIQSSSSQETVKLAS  114 (236)
Q Consensus        40 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~i----~~~g~i~~L~~lL~~~~~~~~~~~a~  114 (236)
                      .+.-..+...++.|+.+++.+..  +.+...-+.++.   .++ +.+..+    .+.+.|+.|+++|....+.+.+.+|+
T Consensus        10 ~e~l~Fik~~~~~v~~llkHI~~--~~ImDlLLklIs---~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa   84 (475)
T PF04499_consen   10 EEMLEFIKSQPNFVDNLLKHIDT--PAIMDLLLKLIS---TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAA   84 (475)
T ss_pred             HHHHHHHHhCccHHHHHHHhcCC--cHHHHHHHHHHc---cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHH
Confidence            44555666667888888888754  344444333433   332 334433    46899999999998665788999999


Q ss_pred             HHHHHhcccch--------------hhhhhcccCcHHHHHHhhcC-CCcHHHHHHHHHHHHHhc
Q 044293          115 SLICSLAMLDK--------------NKARFGVAGTVQVLVKAVSA-PSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus       115 ~~L~~Ls~~~~--------------~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~  163 (236)
                      -+|+.+.....              --..+.....|..|++.+-. .......+++.++..|.+
T Consensus        85 ~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIR  148 (475)
T PF04499_consen   85 DFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIR  148 (475)
T ss_pred             HHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            88887643221              12334457788888887774 334566777777766654

This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=88.02  E-value=6.8  Score=27.51  Aligned_cols=73  Identities=16%  Similarity=0.176  Sum_probs=52.6

Q ss_pred             hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhcc------CCChHHHHHHHHHHH
Q 044293            4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSK------SSSPIIRTLSLSILL   76 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~------~~~~~~~~~a~~~L~   76 (236)
                      ...++.+..+.+.|++.++.++.+|+..|-.+..+ ++.....+... .....++.+..      ..+..+++.+..++.
T Consensus        33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~-~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~  111 (115)
T cd00197          33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASN-DFAVELLKFDKSKLLGDDVSTNVREKAIELVQ  111 (115)
T ss_pred             ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHh-HHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence            34577888889999888999999999999998887 45667777776 66666655311      124577777776664


Q ss_pred             h
Q 044293           77 N   77 (236)
Q Consensus        77 ~   77 (236)
                      .
T Consensus       112 ~  112 (115)
T cd00197         112 L  112 (115)
T ss_pred             H
Confidence            4

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.48  E-value=23  Score=33.54  Aligned_cols=67  Identities=10%  Similarity=0.067  Sum_probs=38.9

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhc-cCCChHHHHHHHHHHHh
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS-KSSSPIIRTLSLSILLN   77 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~   77 (236)
                      =+.+.+|.+.+-|.+..+=+|+.|.-++...-..    -+.+.  +++-+.+-++| ...|+.+.++|.-.|..
T Consensus       131 Llepl~p~IracleHrhsYVRrNAilaifsIyk~----~~~L~--pDapeLi~~fL~~e~DpsCkRNAFi~L~~  198 (948)
T KOG1058|consen  131 LLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN----FEHLI--PDAPELIESFLLTEQDPSCKRNAFLMLFT  198 (948)
T ss_pred             HhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh----hhhhc--CChHHHHHHHHHhccCchhHHHHHHHHHh
Confidence            3455666667777777777777777666555332    23333  34444444444 34577777776665554

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.17  E-value=27  Score=33.08  Aligned_cols=76  Identities=13%  Similarity=0.136  Sum_probs=39.2

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC-----------CCcHHHHHHHHHHHHHhcC
Q 044293           96 RLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA-----------PSNPAGHHLLSSLAELVQF  164 (236)
Q Consensus        96 ~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~aL~~L~~~  164 (236)
                      -++.+|.+. +.+++..+......|+....          +.-++.+|+.           .+..-+..-+.+++..+..
T Consensus       321 DvLrvLss~-dldvr~Ktldi~ldLvssrN----------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~  389 (948)
T KOG1058|consen  321 DVLRVLSSP-DLDVRSKTLDIALDLVSSRN----------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK  389 (948)
T ss_pred             HHHHHcCcc-cccHHHHHHHHHHhhhhhcc----------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Confidence            344445555 56666666666666655442          2333333321           1223355556667666653


Q ss_pred             -CCChHHHHHhCcHHHHHHHhcCC
Q 044293          165 -HGNSTLAVRAGAVSELIHLIGST  187 (236)
Q Consensus       165 -~~~~~~~~~~g~i~~lv~ll~~~  187 (236)
                       ++..     +.++|.+++.+.+.
T Consensus       390 Fp~~a-----atvV~~ll~fisD~  408 (948)
T KOG1058|consen  390 FPEVA-----ATVVSLLLDFISDS  408 (948)
T ss_pred             ChHHH-----HHHHHHHHHHhccC
Confidence             3322     34567777777665

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=87.16  E-value=2.9  Score=38.59  Aligned_cols=183  Identities=12%  Similarity=0.052  Sum_probs=112.9

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      +..+|.++++++..|..+|..-+..+-.+...   ....+.+. -++|.+..-+...++.+++.++..+..++..=..+ 
T Consensus       329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d-~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~-  403 (690)
T KOG1243|consen  329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILND-QIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR-  403 (690)
T ss_pred             cchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcc-hhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-
Confidence            55789999999999999998777776666543   33444555 78888888888889999999888887765432222 


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG  166 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~  166 (236)
                       ..+...+..+-+ ++.++...++.+..-+|..++.+.....  ...-.+.+..+-++++=.+.+..+..+++..+...+
T Consensus       404 -~Ln~Ellr~~ar-~q~d~~~~irtntticlgki~~~l~~~~--R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~  479 (690)
T KOG1243|consen  404 -NLNGELLRYLAR-LQPDEHGGIRTNTTICLGKIAPHLAASV--RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD  479 (690)
T ss_pred             -hhcHHHHHHHHh-hCccccCcccccceeeecccccccchhh--hccccchhhhhhhcCCCCCchhhhhHHHhhcccccc
Confidence             222223333333 3333256778787777777776542111  122233444555666656677888888777776555


Q ss_pred             ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHH
Q 044293          167 NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLN  201 (236)
Q Consensus       167 ~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~  201 (236)
                      ....  ...++|.+.-+.-+.+ ..++..|-.++.
T Consensus       480 ~~~v--a~kIlp~l~pl~vd~e-~~vr~~a~~~i~  511 (690)
T KOG1243|consen  480 QSEV--ANKILPSLVPLTVDPE-KTVRDTAEKAIR  511 (690)
T ss_pred             hhhh--hhhccccccccccCcc-cchhhHHHHHHH
Confidence            4443  3456677777776653 344444444433

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=87.02  E-value=4  Score=27.71  Aligned_cols=69  Identities=16%  Similarity=0.176  Sum_probs=53.3

Q ss_pred             cHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293          135 TVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       135 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~  205 (236)
                      .+...+..+.++.++++.+++..|+.|...+. ....-..+++..+...|++.+ +=+--+|+..|..|+.
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~   72 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALAD   72 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHH
Confidence            35566778888889999999999999998777 222223577788888888875 4466789999998885

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.96  E-value=19  Score=35.68  Aligned_cols=111  Identities=13%  Similarity=0.125  Sum_probs=73.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccC--
Q 044293           28 ALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS--  105 (236)
Q Consensus        28 a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~--  105 (236)
                      +..+|..+.+++.+|...|.++ .|+..++.++-  +.+-|...+.++..+-..+..+   +...-+-.+++.|+++-  
T Consensus       662 gwDcLisllKnnteNqklFrea-nGvklilpfli--ndehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt  735 (2799)
T KOG1788|consen  662 GWDCLISLLKNNTENQKLFREA-NGVKLILPFLI--NDEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVT  735 (2799)
T ss_pred             hHHHHHHHHhccchhhHHHHhh-cCceEEEEeee--chHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhccee
Confidence            3566778888889999999998 88999988883  3455666777777654433221   12233446677777631  


Q ss_pred             ---------CHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhc
Q 044293          106 ---------SQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVS  144 (236)
Q Consensus       106 ---------~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~  144 (236)
                               ..+.+....++++...... ..+..+++.++...|...|.
T Consensus       736 ~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLh  784 (2799)
T KOG1788|consen  736 RISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLH  784 (2799)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHH
Confidence                     1244555677888776443 56677778888888777664

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=86.61  E-value=2.8  Score=31.67  Aligned_cols=133  Identities=11%  Similarity=0.073  Sum_probs=67.9

Q ss_pred             cccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHH
Q 044293           91 METIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTL  170 (236)
Q Consensus        91 ~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~  170 (236)
                      ...++.|..+|+++.+.+++..+..+|..|-.-|-.+......+ .+.-  .-...+.......   +.+.... ..-+.
T Consensus         9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~-~~~~--~~~~~~~~~~~~~---l~~~~~~-~~~ee   81 (160)
T PF11865_consen    9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS-LDSK--SSENSNDESTDIS---LPMMGIS-PSSEE   81 (160)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc-CCcc--ccccccccchhhH---HhhccCC-CchHH
Confidence            45788899999988679999999999999955543333321110 0100  0000111111111   1111111 12333


Q ss_pred             HHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh-hhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293          171 AVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD-EGMIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       171 ~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                      ..-..++..|+..|++.+-......++.++.++.... .....+..  -++|.+++.+++.++
T Consensus        82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~  142 (160)
T PF11865_consen   82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPD  142 (160)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCH
Confidence            3344567778888877542333345555555554322 22244443  267888888876554

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=86.39  E-value=17  Score=29.87  Aligned_cols=136  Identities=13%  Similarity=0.074  Sum_probs=84.8

Q ss_pred             CcHHHHHhhccCCC----hHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccC---CHHHHHHHHHHHHHhccc
Q 044293           51 GAISTLLGLSKSSS----PIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS---SQETVKLASSLICSLAML  123 (236)
Q Consensus        51 g~i~~Lv~lL~~~~----~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~---~~~~~~~a~~~L~~Ls~~  123 (236)
                      +.+|.++.-+..++    ......++..|..+|...       ..+.+..++.....+.   ..+....++..|+.--..
T Consensus       111 a~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~-------~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P  183 (262)
T PF14225_consen  111 ALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ-------GLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFP  183 (262)
T ss_pred             HHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC-------CCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCc
Confidence            45666666666655    123345667777777221       2334445555444432   345666666666643221


Q ss_pred             chhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293          124 DKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLL  203 (236)
Q Consensus       124 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l  203 (236)
                      +-      +...+-.|+++|.++-+-.+..++..|..+-..-+.+.. .-.+.+.++++++++.    .-..|+.+|.+.
T Consensus       184 ~~------~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~----~~~eAL~VLd~~  252 (262)
T PF14225_consen  184 DH------EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTD----LWMEALEVLDEI  252 (262)
T ss_pred             hh------HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCc----cHHHHHHHHHHH
Confidence            11      245677899999888778889999999888776544433 4566899999999764    335777777664


Q ss_pred             c
Q 044293          204 A  204 (236)
Q Consensus       204 ~  204 (236)
                      .
T Consensus       253 v  253 (262)
T PF14225_consen  253 V  253 (262)
T ss_pred             H
Confidence            3

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=85.99  E-value=16  Score=35.20  Aligned_cols=121  Identities=10%  Similarity=0.108  Sum_probs=62.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH------Hhhhcc
Q 044293           19 SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ------SLASME   92 (236)
Q Consensus        19 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~------~i~~~g   92 (236)
                      .++....-.+.+.|..|+.++ .+...|++. |||..|+..=+..  +.-.....+|+.+......-.      ..+-..
T Consensus       364 ~~d~~l~~~~~k~~~~l~~h~-kfa~~fv~~-~gi~kll~vpr~s--~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~  439 (1516)
T KOG1832|consen  364 LDDSPLLPDVMKLICALAAHR-KFAAMFVER-RGILKLLAVPRVS--ETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQ  439 (1516)
T ss_pred             cccccccHHHHHHHHHHHHhh-HHHHHHHHh-hhhHHHhcCCCch--hhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHH
Confidence            344445667888899998875 466777887 8898887753322  111222344555444332211      122234


Q ss_pred             cHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhc
Q 044293           93 TIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVS  144 (236)
Q Consensus        93 ~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~  144 (236)
                      .+..-++++.++ ....+.+++......-........+....+++.|+.++.
T Consensus       440 vv~~~~~l~~cs-~~~~~~~~~~ff~~~f~frail~~fd~~d~l~~l~~~~~  490 (1516)
T KOG1832|consen  440 VVKLAIELLDCS-QDQARKNSALFFAAAFVFRAILDAFDAQDSLQKLLAILK  490 (1516)
T ss_pred             HHHHHHHHHhcc-hhhccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            556667777765 344444444332211111222233334556666665554

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=85.98  E-value=11  Score=35.36  Aligned_cols=128  Identities=12%  Similarity=0.081  Sum_probs=85.0

Q ss_pred             CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc-CCChHHHHHHHHHHHhhCCCCch-hHHhhhcccHHHH
Q 044293           20 DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK-SSSPIIRTLSLSILLNLSLNPDL-KQSLASMETIYRL   97 (236)
Q Consensus        20 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~i~~L   97 (236)
                      ++++.|..|.-.|..+..-+   -+.+.++   .|.|+..+. +++|.+|.+|.-.|..+...=++ .+..     -..|
T Consensus       908 sd~~lq~aA~l~L~klMClS---~~fc~eh---lpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~-----t~yL  976 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLS---FEFCSEH---LPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH-----THYL  976 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHh---HHHHHHH---HHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH-----HHHH
Confidence            68899999988888876532   2334444   899998887 88999999998888765432221 1111     1234


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293           98 NWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus        98 ~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~  163 (236)
                      ..-|... +.++++.|..++.+|-.-.    ++--.|-++.+...|.+++......|-..+..++.
T Consensus       977 yrrL~De-~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098         977 YRRLGDE-DADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred             HHHhcch-hhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence            4445444 7899999999999886532    33335777888888888776655555444444443

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.26  E-value=48  Score=34.01  Aligned_cols=177  Identities=13%  Similarity=0.088  Sum_probs=97.8

Q ss_pred             hHHHhHHHHHHHHh----cCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhh
Q 044293            4 PRVRETINNCVSRS----QSDSYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNL   78 (236)
Q Consensus         4 ~~~~~~i~~lv~~L----~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l   78 (236)
                      +..++..+.||..|    -++++.+|. |..-+++..-.+ ...-.....  .+...|+.=+.+..=++|+.++.||..|
T Consensus       990 ~kl~p~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~n--eIl~eLL~~lt~kewRVReasclAL~dL 1066 (1702)
T KOG0915|consen  990 EKLEPYLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKVVDEYLN--EILDELLVNLTSKEWRVREASCLALADL 1066 (1702)
T ss_pred             HhhhhHHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHHHHHHHH--HHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            34455555555555    478877776 555666654443 333333333  4677777777777778999999999988


Q ss_pred             CCCCchhHHhhhcccHHHHHH-HHhccC--CHHHHH---HHHHHHHHhcccc---hh--hhhhcccCcHHHHH--HhhcC
Q 044293           79 SLNPDLKQSLASMETIYRLNW-IIQSSS--SQETVK---LASSLICSLAMLD---KN--KARFGVAGTVQVLV--KAVSA  145 (236)
Q Consensus        79 ~~~~~~~~~i~~~g~i~~L~~-lL~~~~--~~~~~~---~a~~~L~~Ls~~~---~~--~~~i~~~g~i~~Lv--~lL~~  145 (236)
                      -...+.-+..   .-+|.+.. +++.-+  .+.+|+   .++.+|..++.--   .+  +..-.-..++|.|+  .++ +
T Consensus      1067 l~g~~~~~~~---e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s 1142 (1702)
T KOG0915|consen 1067 LQGRPFDQVK---EKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-S 1142 (1702)
T ss_pred             HcCCChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-c
Confidence            7765542221   12233332 222211  123333   4666666665321   11  11100134455555  333 4


Q ss_pred             CCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCC
Q 044293          146 PSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGST  187 (236)
Q Consensus       146 ~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~  187 (236)
                      .-+.+++-++.++..|+.+...--.-.-...||.|+.....-
T Consensus      1143 ~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~l 1184 (1702)
T KOG0915|consen 1143 KVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSEL 1184 (1702)
T ss_pred             chHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHcccc
Confidence            456788999999999997654422222346677777777654

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=84.70  E-value=2.6  Score=37.49  Aligned_cols=155  Identities=13%  Similarity=0.066  Sum_probs=88.4

Q ss_pred             CcHHHHHhhccCCChHHHHHHHHHHHhhCC-----CCchhHHhh--hcccHHHHHHHHhcc--CCHHHHHHHHHHHHHhc
Q 044293           51 GAISTLLGLSKSSSPIIRTLSLSILLNLSL-----NPDLKQSLA--SMETIYRLNWIIQSS--SSQETVKLASSLICSLA  121 (236)
Q Consensus        51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-----~~~~~~~i~--~~g~i~~L~~lL~~~--~~~~~~~~a~~~L~~Ls  121 (236)
                      +....+...|.+..-..|+++++.+.|++.     -|..+..--  ..-.+..+++.-...  ++..++.++..+|.|+.
T Consensus       433 ~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnll  512 (728)
T KOG4535|consen  433 DAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLL  512 (728)
T ss_pred             HHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH
Confidence            445555555555445668888888888643     222111111  111333333332221  15678889999999987


Q ss_pred             ccchhhhhhc----ccCcHHHHH-HhhcCCCcHHHHHHHHHHHHHhcCCCChH-HHHH-hCcHHHHHHHhcCCChhhHHH
Q 044293          122 MLDKNKARFG----VAGTVQVLV-KAVSAPSNPAGHHLLSSLAELVQFHGNST-LAVR-AGAVSELIHLIGSTEAEDLAG  194 (236)
Q Consensus       122 ~~~~~~~~i~----~~g~i~~Lv-~lL~~~~~~~~~~a~~aL~~L~~~~~~~~-~~~~-~g~i~~lv~ll~~~~~~~~~~  194 (236)
                      ..-+.-...+    ..|.+..++ .....++.+++=++|-++.||-.++..+- .+-- .-+++.|..|+.+..+-.++.
T Consensus       513 Qvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi  592 (728)
T KOG4535|consen  513 QFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRI  592 (728)
T ss_pred             HHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEee
Confidence            6432111111    123333333 22234567888999999999999876532 2222 346788888887654456777


Q ss_pred             HHHHHHHHHcC
Q 044293          195 TSLAVLNLLAR  205 (236)
Q Consensus       195 ~a~~~L~~l~~  205 (236)
                      +|+.+|..-..
T Consensus       593 ~AA~aL~vp~~  603 (728)
T KOG4535|consen  593 RAAAALSVPGK  603 (728)
T ss_pred             hhhhhhcCCCC
Confidence            88888765543

>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins

Probab=84.38  E-value=2  Score=30.06  Aligned_cols=39  Identities=26%  Similarity=0.466  Sum_probs=33.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHH
Q 044293           27 KALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPII   67 (236)
Q Consensus        27 ~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~   67 (236)
                      .....+..++.. |+....|++. |+++.|++||.+.+.++
T Consensus        65 ~~Ik~l~~La~~-P~LYp~lv~l-~~v~sL~~LL~HeN~DI  103 (108)
T PF08216_consen   65 EEIKKLSVLATA-PELYPELVEL-GAVPSLLGLLSHENTDI  103 (108)
T ss_pred             HHHHHHHHccCC-hhHHHHHHHc-CCHHHHHHHHCCCCcce
Confidence            466777788775 8889999999 99999999999987665

A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=84.18  E-value=21  Score=33.63  Aligned_cols=34  Identities=9%  Similarity=-0.173  Sum_probs=15.2

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcccchhhh
Q 044293           95 YRLNWIIQSSSSQETVKLASSLICSLAMLDKNKA  128 (236)
Q Consensus        95 ~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~  128 (236)
                      +..+.+|..+-++-+|--++.+|.-.|....++.
T Consensus       591 ~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e  624 (929)
T KOG2062|consen  591 PSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE  624 (929)
T ss_pred             hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence            3444444433244555555555554444443333

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=83.91  E-value=28  Score=32.33  Aligned_cols=157  Identities=17%  Similarity=0.137  Sum_probs=92.9

Q ss_pred             ChHHHHHHHHHHHhhCCCCchhHHhh----hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHH
Q 044293           64 SPIIRTLSLSILLNLSLNPDLKQSLA----SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVL  139 (236)
Q Consensus        64 ~~~~~~~a~~~L~~l~~~~~~~~~i~----~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~L  139 (236)
                      ..+.+.-|+.+|.-+..|+..-..+.    ....+..++..+. + ++..+..+.++|.|+-.++.++..+...  ...+
T Consensus       557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~-~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i  632 (745)
T KOG0301|consen  557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-A-DPANQLLVVRCLANLFSNPAGRELFMSR--LESI  632 (745)
T ss_pred             CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-c-chhHHHHHHHHHHHhccCHHHHHHHHHH--HHHH
Confidence            45666777777777666655433333    2335566666655 4 5777888999999998887777666542  2222


Q ss_pred             HHhh---cCCCcHHHHHHHHHH-HHHhc--CCCChHHHHHhCcHHHHHHHhcCC----ChhhHHHHHHHHHHHHcCChhh
Q 044293          140 VKAV---SAPSNPAGHHLLSSL-AELVQ--FHGNSTLAVRAGAVSELIHLIGST----EAEDLAGTSLAVLNLLARFDEG  209 (236)
Q Consensus       140 v~lL---~~~~~~~~~~a~~aL-~~L~~--~~~~~~~~~~~g~i~~lv~ll~~~----~~~~~~~~a~~~L~~l~~~~~~  209 (236)
                      ...+   .+.+..-...|..++ .|++.  .+.+-+    .|+.+.+...+...    ++-+..-..+-+|.+|+..+..
T Consensus       633 ~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~  708 (745)
T KOG0301|consen  633 LDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDAS  708 (745)
T ss_pred             hhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHH
Confidence            2222   223322333333332 34443  333332    46666666665542    1122234566788889999988


Q ss_pred             HHHHHhcCCcHHHHHHHhhC
Q 044293          210 MIALTKTDQIVSLMVDVLKG  229 (236)
Q Consensus       210 ~~~i~~~g~~i~~lv~~l~~  229 (236)
                      ..++.+.-. +..+.+-++.
T Consensus       709 ~~~~A~~~~-v~sia~~~~~  727 (745)
T KOG0301|consen  709 VIQLAKNRS-VDSIAKKLKE  727 (745)
T ss_pred             HHHHHHhcC-HHHHHHHHHH
Confidence            888888776 7888887764

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=83.83  E-value=18  Score=34.76  Aligned_cols=136  Identities=15%  Similarity=0.072  Sum_probs=85.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHH
Q 044293           19 SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLN   98 (236)
Q Consensus        19 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~   98 (236)
                      +.+-.+...++..|..++......-+.+..  +..|.+++-+...-+.+++.+..++-..+.      ...-...++.+.
T Consensus       306 DaN~~v~~~aa~~l~~ia~~lr~~~~~~~~--~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~  377 (815)
T KOG1820|consen  306 DANINVVMLAAQILELIAKKLRPLFRKYAK--NVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAIL  377 (815)
T ss_pred             CcchhHHHHHHHHHHHHHHhcchhhHHHHH--hhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHH
Confidence            445555566777777777664333333443  677888887777666666655555544333      111235677778


Q ss_pred             HHHhccCCHHHHHHHHHHHHHhcc-cc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293           99 WIIQSSSSQETVKLASSLICSLAM-LD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus        99 ~lL~~~~~~~~~~~a~~~L~~Ls~-~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~  163 (236)
                      ..++++ ++..+..+...+-.+.. .+ .+...-.-.+.+|.++.+..+.+.+++..|..++..+-.
T Consensus       378 e~lk~k-np~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  378 EALKGK-NPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             HHhcCC-ChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence            888888 89998886666554433 22 111111125778888888888888999988888766543

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=82.99  E-value=4.9  Score=29.69  Aligned_cols=73  Identities=22%  Similarity=0.199  Sum_probs=59.6

Q ss_pred             CcHHHHHhhccCCChHHHHHHHHHHHhhCCCC--chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhccc
Q 044293           51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNP--DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAML  123 (236)
Q Consensus        51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~  123 (236)
                      .++..|-.-|.++++.++-.|+.+|-.|..+=  .....+.+.+++..|++++....++.++..++..+..-+..
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~  115 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA  115 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence            56788888899999999999999888877762  34677888999999999998644789999999888877653

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=82.85  E-value=26  Score=33.35  Aligned_cols=188  Identities=10%  Similarity=0.027  Sum_probs=96.8

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      ....|.++..+++..++++....+.+..+-..++......... ..+|.++.+-....-+++......+..++....  .
T Consensus       436 ~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~-slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~  512 (759)
T KOG0211|consen  436 SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSN-SLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--V  512 (759)
T ss_pred             cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhh-hhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--h
Confidence            3455666777788888888877765544332222222222333 567777776444334555555555555554333  1


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG  166 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~  166 (236)
                      .+.+.-.-+.+..-+.+- ..++++.|+..+..++..-.....  ..-.++.++.+..+++...+...+.++..++.--.
T Consensus       513 ~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~~w~--~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g  589 (759)
T KOG0211|consen  513 EFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGSEWA--RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG  589 (759)
T ss_pred             HHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCcchh--HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc
Confidence            121111111111112222 468889999988888775542222  24557777777777655555555555544433111


Q ss_pred             ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293          167 NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLL  203 (236)
Q Consensus       167 ~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l  203 (236)
                        +.+.....+|.+.++..+.. +.++-++++.|.-+
T Consensus       590 --~ei~~~~Llp~~~~l~~D~v-anVR~nvak~L~~i  623 (759)
T KOG0211|consen  590 --QEITCEDLLPVFLDLVKDPV-ANVRINVAKHLPKI  623 (759)
T ss_pred             --cHHHHHHHhHHHHHhccCCc-hhhhhhHHHHHHHH
Confidence              11112234466666666653 55555665555543

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=82.73  E-value=29  Score=29.49  Aligned_cols=157  Identities=14%  Similarity=0.076  Sum_probs=108.1

Q ss_pred             HHHHHhhccCCChHHHHHHHHHHHhhCCCCc--hhHHhh-hcc-cHHHHHHHHhccC----C--------HHHHHHHHHH
Q 044293           53 ISTLLGLSKSSSPIIRTLSLSILLNLSLNPD--LKQSLA-SME-TIYRLNWIIQSSS----S--------QETVKLASSL  116 (236)
Q Consensus        53 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~i~-~~g-~i~~L~~lL~~~~----~--------~~~~~~a~~~  116 (236)
                      ++.+-.-|++..+.+...++..|..+.....  ....+. .-+ -.+.+.+++....    +        +++|.+....
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            6777777888888888899999999988433  344444 333 3445666664321    1        2788887777


Q ss_pred             HHHhcc--cchhhhhhc-ccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-CC----CChHHHHHhCcHHHHHHHhcCCC
Q 044293          117 ICSLAM--LDKNKARFG-VAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ-FH----GNSTLAVRAGAVSELIHLIGSTE  188 (236)
Q Consensus       117 L~~Ls~--~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~----~~~~~~~~~g~i~~lv~ll~~~~  188 (236)
                      +..+..  +...+..+. +.+.+..+.+.|..+++++....+.+|..-.. .+    ..|..+.....+..+..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            665544  334555555 47889999999999888899999999975433 32    23445556678888999776653


Q ss_pred             h---hhHHHHHHHHHHHHcCChhh
Q 044293          189 A---EDLAGTSLAVLNLLARFDEG  209 (236)
Q Consensus       189 ~---~~~~~~a~~~L~~l~~~~~~  209 (236)
                      .   ..+.+.+-..|..+|.++..
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p~~  241 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDPKH  241 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCCCc
Confidence            1   36788899999999987653

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=82.30  E-value=17  Score=26.70  Aligned_cols=73  Identities=14%  Similarity=0.261  Sum_probs=55.7

Q ss_pred             HHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHH-HHhhccC---CChHHHHHHHHHHHhhC
Q 044293            6 VRETINNCVSRSQS-DSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAIST-LLGLSKS---SSPIIRTLSLSILLNLS   79 (236)
Q Consensus         6 ~~~~i~~lv~~L~~-~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~-Lv~lL~~---~~~~~~~~a~~~L~~l~   79 (236)
                      ..+.+..+.+.|++ .++.++..|+..|-.+..+ +......+... +.+.. |+.+++.   ....++..++..+...+
T Consensus        36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask-~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~  114 (141)
T cd03565          36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKK-DFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA  114 (141)
T ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHH-HhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence            46788888888874 5888888898888888876 34567778776 89987 9999863   23478888888887654

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=81.88  E-value=18  Score=33.44  Aligned_cols=96  Identities=11%  Similarity=0.097  Sum_probs=57.0

Q ss_pred             hcccHHHHHHHHhc---cCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC---CcHHHHHHHHHHHHHhc
Q 044293           90 SMETIYRLNWIIQS---SSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP---SNPAGHHLLSSLAELVQ  163 (236)
Q Consensus        90 ~~g~i~~L~~lL~~---~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~aL~~L~~  163 (236)
                      ....++.+...|..   ..+.+-+..++.+|.|+-.          ...++.|..++...   +..++..|+++|..+..
T Consensus       484 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~  553 (618)
T PF01347_consen  484 IEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK  553 (618)
T ss_dssp             -GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG
T ss_pred             HHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhh
Confidence            34567777777762   2256777788899988854          34677888777765   44577788888876644


Q ss_pred             CCCChHHHHHhCcHHHHHHHhcCC-ChhhHHHHHHHHHHH
Q 044293          164 FHGNSTLAVRAGAVSELIHLIGST-EAEDLAGTSLAVLNL  202 (236)
Q Consensus       164 ~~~~~~~~~~~g~i~~lv~ll~~~-~~~~~~~~a~~~L~~  202 (236)
                      ....       .+.+.++.++.+. ++.+++-.|.-+|..
T Consensus       554 ~~~~-------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~  586 (618)
T PF01347_consen  554 HCPE-------KVREILLPIFMNTTEDPEVRIAAYLILMR  586 (618)
T ss_dssp             T-HH-------HHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred             cCcH-------HHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence            3222       2336677777553 345665555544433

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.35  E-value=24  Score=33.42  Aligned_cols=68  Identities=18%  Similarity=0.094  Sum_probs=48.7

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN   81 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~   81 (236)
                      +..+.+=+.|++..+.+.-+|+.++..+...+.   +.+.   ..+..|--+++++.+.+|-.|.++|..+|..
T Consensus       245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~---r~l~---pavs~Lq~flssp~~~lRfaAvRtLnkvAm~  312 (865)
T KOG1078|consen  245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS---RELA---PAVSVLQLFLSSPKVALRFAAVRTLNKVAMK  312 (865)
T ss_pred             hHHHHHHHHHhchhHHHHHHHHHHHhhccccCH---hhcc---hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHh
Confidence            344555555667778888889999988876532   2222   3577777778888888888899999887764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-14
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-10
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-09
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-14
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-10
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-08
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-06
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-13
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-07
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-10
3nmz_A	458	APC variant protein; protein-protein complex, arma	8e-06
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-10
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-07
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-06
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-09
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-04
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-08
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-08
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-07
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-07
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-07
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	7e-05
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-04
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	4e-07
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-04
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-07
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-06
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-04
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-05

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 70.3 bits (172), Expect = 3e-14
 Identities = 36/213 (16%), Positives = 83/213 (38%), Gaps = 4/213 (1%)

Query: 18  QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLN 77
            S        A+ TL ++       +  +    G +  ++ L   ++     ++   L  
Sbjct: 108 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLNKTNVKFLAITTDCLQI 166

Query: 78  LSL-NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTV 136
           L+  N + K  + +      L  I+++ + ++ +   S ++  L++   NK     AG +
Sbjct: 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGM 226

Query: 137 QVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTS 196
           Q L   ++ PS     + L +L  L      +      G +  L+ L+GS +   +   +
Sbjct: 227 QALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAA 284

Query: 197 LAVLNLLARFDEGMIALTKTDQIVSLMVDVLKG 229
             + NL     +  + + +   I +L+  VL+ 
Sbjct: 285 GILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 317

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 58.8 bits (142), Expect = 3e-10
 Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 2/154 (1%)

Query: 51  GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSL-ASMETIYRLNWIIQSSSSQET 109
            AI  L  L      ++   +  ++  LS     + ++  S + +  +   +Q+++  ET
Sbjct: 14  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 73

Query: 110 VKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNST 169
            +  +  + +L+   +       +G +  LVK + +P +    + +++L  L+     + 
Sbjct: 74  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133

Query: 170 LAVR-AGAVSELIHLIGSTEAEDLAGTSLAVLNL 202
           +AVR AG + +++ L+  T  + LA T+  +  L
Sbjct: 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 54.6 bits (131), Expect = 7e-09
 Identities = 27/177 (15%), Positives = 55/177 (31%), Gaps = 7/177 (3%)

Query: 18  QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGL--SKSSSPIIRTLSLSIL 75
            SD       A   L+++T  + + + ++ Q  G I  L+           I   ++  L
Sbjct: 273 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICAL 331

Query: 76  LNLSLNPD----LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG 131
            +L+         + ++     +  +  ++   S    +K    LI +LA+   N A   
Sbjct: 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLR 391

Query: 132 VAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTE 188
             G +  LV+ +                +     G     +  G    L  L     
Sbjct: 392 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH 448

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 31/212 (14%), Positives = 64/212 (30%), Gaps = 24/212 (11%)

Query: 15  SRSQSDSYEDQQKALQTLASITRVSPQYRSLLA--QTDGAISTLLGLSKSSSPIIRTLS- 71
                D  +  + A+  L  +T    +        +    +  ++ L    S      + 
Sbjct: 314 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373

Query: 72  LSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS---------------------SQETV 110
           + ++ NL+L P     L     I RL  ++  +                       +E V
Sbjct: 374 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 433

Query: 111 KLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTL 170
           +  +  +  LA    N+       T+ + V+ + +P           L EL Q    +  
Sbjct: 434 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEA 493

Query: 171 AVRAGAVSELIHLIGSTEAEDLAGTSLAVLNL 202
               GA + L  L+ S         +  +  +
Sbjct: 494 IEAEGATAPLTELLHSRNEGVATYAAAVLFRM 525

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 70.2 bits (172), Expect = 4e-14
 Identities = 36/213 (16%), Positives = 83/213 (38%), Gaps = 4/213 (1%)

Query: 18  QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLN 77
            S        A+ TL ++       +  +    G +  ++ L   ++     ++   L  
Sbjct: 111 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQI 169

Query: 78  LSL-NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTV 136
           L+  N + K  + +      L  I+++ + ++ +   S ++  L++   NK     AG +
Sbjct: 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGM 229

Query: 137 QVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTS 196
           Q L   ++ PS     + L +L  L      +      G +  L+ L+GS +   +   +
Sbjct: 230 QALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAA 287

Query: 197 LAVLNLLARFDEGMIALTKTDQIVSLMVDVLKG 229
             + NL     +  + + +   I +L+  VL+ 
Sbjct: 288 GILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 320

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 57.1 bits (138), Expect = 8e-10
 Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 2/154 (1%)

Query: 51  GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLA-SMETIYRLNWIIQSSSSQET 109
            AI  L  L      ++   +  ++  LS     + ++  S + +  +   +Q+++  ET
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 110 VKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNST 169
            +  +  + +L+   +       +G +  LVK + +P +    + +++L  L+     + 
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 170 LAVR-AGAVSELIHLIGSTEAEDLAGTSLAVLNL 202
           +AVR AG + +++ L+  T  + LA T+  +  L
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 51.3 bits (123), Expect = 7e-08
 Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 25/213 (11%)

Query: 16  RSQSDSYEDQQKALQTLASITRVSPQYRSLLA--QTDGAISTLLGLSKSSSPIIRTLSLS 73
               D  +  + A+  L  +T    +        +    +  ++ L    S      +  
Sbjct: 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377

Query: 74  ILL-NLSLNPDLKQSLASMETIYRLNWIIQSSS---------------------SQETVK 111
            L+ NL+L P     L     I RL  ++  +                       +E V+
Sbjct: 378 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 437

Query: 112 LASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLA 171
             +  +  LA    N+       T+ + V+ + +P           L EL Q    +   
Sbjct: 438 GCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI 497

Query: 172 VRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204
              GA + L  L+ S   E +A  + AVL  ++
Sbjct: 498 EAEGATAPLTELLHSRN-EGVATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 32/200 (16%), Positives = 68/200 (34%), Gaps = 15/200 (7%)

Query: 18  QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLN 77
           ++ +YE        +  +  V    +  + +  G +  L       S  +    L  L N
Sbjct: 195 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA-GGMQALGLHLTDPSQRLVQNCLWTLRN 253

Query: 78  LSLNPDLKQSLASMETIYRLNWIIQ--SSSSQETVKLASSLICSLAM-LDKNKARFGVAG 134
           LS     ++ +  +     L  ++Q   S     V  A+ ++ +L     KNK      G
Sbjct: 254 LSDAATKQEGMEGL-----LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 308

Query: 135 TVQVLVKAVSAPSNPAG--HHLLSSLAELVQFHGNSTLA----VRAGAVSELIHLIGSTE 188
            ++ LV+ V    +        + +L  L   H  + +A         +  ++ L+    
Sbjct: 309 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 368

Query: 189 AEDLAGTSLAVLNLLARFDE 208
              L   ++ ++  LA    
Sbjct: 369 HWPLIKATVGLIRNLALCPA 388

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 68.5 bits (167), Expect = 2e-13
 Identities = 34/207 (16%), Positives = 80/207 (38%), Gaps = 4/207 (1%)

Query: 18  QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLN 77
            S        A+ TL ++       +  +    G +  ++ L   ++     ++   L  
Sbjct: 244 GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLNKTNVKFLAITTDCLQI 302

Query: 78  LSL-NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTV 136
           L+  N + K  + +      L  I+++ + ++ +   S ++  L++   NK     AG +
Sbjct: 303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGM 362

Query: 137 QVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTS 196
           Q L   ++ PS     + L +L  L      +      G +  L+ L+GS +   +   +
Sbjct: 363 QALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAA 420

Query: 197 LAVLNLLARFDEGMIALTKTDQIVSLM 223
             + NL     +  + + +   I +L+
Sbjct: 421 GILSNLTCNNYKNKMMVCQVGGIEALV 447

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 61.2 bits (148), Expect = 4e-11
 Identities = 35/220 (15%), Positives = 88/220 (40%), Gaps = 3/220 (1%)

Query: 14  VSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLS 73
              +   + +   +  Q L         Y+        AI  L  L      ++   +  
Sbjct: 113 FDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAV 172

Query: 74  ILLNLSLNPDLKQSLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV 132
           ++  LS     + ++  S + +  +   +Q+++  ET +  S  + +L+   +       
Sbjct: 173 MVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK 232

Query: 133 AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVR-AGAVSELIHLIGSTEAED 191
           +G +  LV  + +P +    H +++L  L+     + +AVR AG + +++ L+  T  + 
Sbjct: 233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 292

Query: 192 LAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRS 231
           LA T+  +   LA  ++    +         +V++++  +
Sbjct: 293 LAITTDCLQI-LAYGNQESKLIILASGGPQALVNIMRTYT 331

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 50.8 bits (121), Expect = 1e-07
 Identities = 37/214 (17%), Positives = 68/214 (31%), Gaps = 25/214 (11%)

Query: 16  RSQSDSYEDQQKALQTLASITRVSPQYRSLLA--QTDGAISTLLGLSKSSSPIIRTLSLS 73
               D  +  + A+  L  +T             +    +  ++ L    S      +  
Sbjct: 451 LRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510

Query: 74  ILL-NLSLNPDLKQSLASMETIYRLNWIIQSSS---------------------SQETVK 111
            L+ NL+L P     L     I RL  ++  +                       +E V+
Sbjct: 511 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 570

Query: 112 LASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLA 171
             +  +  LA    N+       T+ + V+ + +P           L EL Q    +   
Sbjct: 571 ACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI 630

Query: 172 VRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR 205
              GA + L  L+ S   E +A  + AVL  ++ 
Sbjct: 631 EAEGATAPLTELLHSRN-EGVATYAAAVLFRMSE 663

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 58.4 bits (141), Expect = 3e-10
 Identities = 40/219 (18%), Positives = 86/219 (39%), Gaps = 13/219 (5%)

Query: 25  QQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL--NP 82
           ++ A   L ++T      ++ L    G +  L+   KS S  ++ +  S+L NLS   + 
Sbjct: 217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV 276

Query: 83  DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAML-DKNKARF-GVAGTVQVLV 140
           + K++L  + ++  L         + T+K   S + +L+    +NKA    V G +  LV
Sbjct: 277 NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 336

Query: 141 KAVSAPSNPAGHHLLSSLA--------ELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDL 192
             ++  S      ++ S           +     +  +      +  L+  + S     +
Sbjct: 337 GTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV 396

Query: 193 AGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRS 231
           +     + NL AR  +   AL      VS++ +++  + 
Sbjct: 397 SNACGTLWNLSARNPKDQEALWDMG-AVSMLKNLIHSKH 434

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 45.3 bits (107), Expect = 8e-06
 Identities = 33/199 (16%), Positives = 77/199 (38%), Gaps = 11/199 (5%)

Query: 18  QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGL-SKSSSPIIRTLSLSILL 76
           +S+S + QQ     L +++  +        +  G++  L+    +          LS L 
Sbjct: 253 KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALW 312

Query: 77  NLS-LNPDLKQSLAS----METIYRLNWIIQSSSSQETVKLASSLICSLAML----DKNK 127
           NLS    + K  + +    +  +         +++   ++    ++ +++ L    + ++
Sbjct: 313 NLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 372

Query: 128 ARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG-NSTLAVRAGAVSELIHLIGS 186
                   +Q L++ + + S     +   +L  L   +  +       GAVS L +LI S
Sbjct: 373 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 432

Query: 187 TEAEDLAGTSLAVLNLLAR 205
                  G++ A+ NL+A 
Sbjct: 433 KHKMIAMGSAAALRNLMAN 451

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 57.2 bits (138), Expect = 8e-10
 Identities = 41/219 (18%), Positives = 87/219 (39%), Gaps = 13/219 (5%)

Query: 25  QQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL--NP 82
           ++ A   L ++T      ++ L    G +  L+   KS S  ++ +  S+L NLS   + 
Sbjct: 101 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV 160

Query: 83  DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAML-DKNKARF-GVAGTVQVLV 140
           + K++L  + ++  L         + T+K   S + +L+    +NKA    V G +  LV
Sbjct: 161 NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 220

Query: 141 KAVSAPSNP--------AGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDL 192
             ++  S           G  L +  + +     +  +      +  L+  + S     +
Sbjct: 221 GTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV 280

Query: 193 AGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRS 231
           +     + NL AR  +   AL      VS++ +++  + 
Sbjct: 281 SNACGTLWNLSARNPKDQEALWDMG-AVSMLKNLIHSKH 318

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 35/200 (17%), Positives = 79/200 (39%), Gaps = 13/200 (6%)

Query: 18  QSDSYEDQQKALQTLASIT-RVSPQYRSLLAQTDGAISTLLGL-SKSSSPIIRTLSLSIL 75
           +S+S + QQ     L +++ R     +  L +  G++  L+    +          LS L
Sbjct: 137 KSESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSAL 195

Query: 76  LNLS-LNPDLKQSLAS----METIYRLNWIIQSSSSQETVKLASSLICSLAML----DKN 126
            NLS    + K  + +    +  +         +++   ++    ++ +++ L    + +
Sbjct: 196 WNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255

Query: 127 KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL-VQFHGNSTLAVRAGAVSELIHLIG 185
           +        +Q L++ + + S     +   +L  L  +   +       GAVS L +LI 
Sbjct: 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH 315

Query: 186 STEAEDLAGTSLAVLNLLAR 205
           S       G++ A+ NL+A 
Sbjct: 316 SKHKMIAMGSAAALRNLMAN 335

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 35/222 (15%), Positives = 69/222 (31%), Gaps = 15/222 (6%)

Query: 25  QQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL 84
               L  L  I              +  +        +        ++ +L+ LS + + 
Sbjct: 6   HHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEH 65

Query: 85  KQSLAS----------METIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARF-GV 132
           + ++            ++    +  +     S    + A   + +L   D  NKA    +
Sbjct: 66  RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125

Query: 133 AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG--NSTLAVRAGAVSELIHLIGSTEAE 190
            G ++ LV  + + S      + S L  L       +       G+V  L+      + E
Sbjct: 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE 185

Query: 191 D-LAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRS 231
             L     A+ NL A   E    +   D  ++ +V  L  RS
Sbjct: 186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS 227

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 27/197 (13%), Positives = 71/197 (36%), Gaps = 4/197 (2%)

Query: 17  SQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILL 76
            Q+   ++++ AL+ LA +   +    +   Q  G    +    ++ +  +R  +  ++ 
Sbjct: 49  EQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG 107

Query: 77  NL-SLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM-LDKNKARFGVAG 134
                   +++ +  +  + +L  ++   +       A   I  L    +    +F    
Sbjct: 108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLD 167

Query: 135 TVQVLVKAVSAPSNPAGHHLLSSLAELVQFH-GNSTLAVRAGAVSELIHLIGSTEAEDLA 193
              VL++A+              L  L+  H  +       G V +L+ L+ +  +    
Sbjct: 168 GFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHE 227

Query: 194 GTSLAVLNLLARFDEGM 210
               A+ +L+  F +G+
Sbjct: 228 HVLGALCSLVTDFPQGV 244

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 27/189 (14%), Positives = 66/189 (34%), Gaps = 4/189 (2%)

Query: 43  RSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQ 102
             L   +     T     +++    R  +L +L +L  N D       +  ++ L     
Sbjct: 32  SCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYL 91

Query: 103 SSSSQETVKLASSLICSLAML-DKNKARFGVAGTVQVLVKAVSAPSNPAGH-HLLSSLAE 160
            + +      A+ LI + +      + +    G ++ L++ +   +        L +++ 
Sbjct: 92  EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 151

Query: 161 LVQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQI 219
           LV+         +R    S L+  +     +    ++  + NLL    E    L     +
Sbjct: 152 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG-M 210

Query: 220 VSLMVDVLK 228
           V  +V +++
Sbjct: 211 VQQLVALVR 219

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 52.9 bits (126), Expect = 2e-08
 Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 3/139 (2%)

Query: 9   TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIR 68
           TI   V    S   + Q      +          +  + Q  G I  L+ L +S +  ++
Sbjct: 3   TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQ-LGGICKLVDLLRSPNQNVQ 61

Query: 69  TLSLSILLNLSL-NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNK 127
             +   L NL   +   K        I     +++ + + E  K  + L+ +L+  D+ K
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121

Query: 128 ARFGVAGTVQVLVKAVSAP 146
               +A  + VL   V  P
Sbjct: 122 EEL-IADALPVLADRVIIP 139

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 42/210 (20%), Positives = 90/210 (42%), Gaps = 9/210 (4%)

Query: 18  QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLN 77
            SD  ++Q  A +  + I     +    +    GA+  L+ L  S +  I   +L  L N
Sbjct: 22  NSDDMQEQLSATRKFSQILSDGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSN 80

Query: 78  LSL-NPDLKQSLASMETIYRLNWIIQ--SSSSQETVKLASSLICSLAMLDKNKARFGV-A 133
           ++    +  Q++     +  L   +Q  SS +++ ++ A   + ++A     + +  + A
Sbjct: 81  IASGGNEQIQAVIDAGALPAL---VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137

Query: 134 GTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLA-VRAGAVSELIHLIGSTEAEDL 192
           G +  LV+ +S+P+       L +L+ +         A + AGA+  L+ L+ S   + L
Sbjct: 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 197

Query: 193 AGTSLAVLNLLARFDEGMIALTKTDQIVSL 222
                A+ N+ +  +E   A+ +   +  L
Sbjct: 198 QEALWALSNIASGGNEQKQAVKEAGALEKL 227

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 50.3 bits (119), Expect = 2e-07
 Identities = 16/145 (11%), Positives = 51/145 (35%), Gaps = 3/145 (2%)

Query: 9   TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIR 68
            +   ++         +  A   L  +   + + ++ + +    I  L+GL       + 
Sbjct: 49  ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKL-KGIPVLVGLLDHPKKEVH 107

Query: 69  TLSLSILLNLSL--NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN 126
             +   L N+S   + D K ++ + + +  L  +++ +   +  ++ +  + +L+  D  
Sbjct: 108 LGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI 167

Query: 127 KARFGVAGTVQVLVKAVSAPSNPAG 151
           K          +  + +   S    
Sbjct: 168 KMEIVDHALHALTDEVIIPHSGWER 192

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 39/190 (20%), Positives = 79/190 (41%), Gaps = 6/190 (3%)

Query: 18  QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLN 77
            S   ++ Q AL+ L+ I     +    +    GA+  L+ L  S +  I   +L  L N
Sbjct: 22  NSPDQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSN 80

Query: 78  LSL-NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAML-DKNKARFGVAGT 135
           ++    +  Q++     +  L  ++ S +  + ++ A   + ++A   ++       AG 
Sbjct: 81  IASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAGA 139

Query: 136 VQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVR-AGAVSELIHLIGSTEAEDLAG 194
           +  LV+ +S+P+       L +L+ +         AV+ AGA+ +L  L    E E +  
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH-ENEKIQK 198

Query: 195 TSLAVLNLLA 204
            +   L  L 
Sbjct: 199 EAQEALEKLQ 208

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 50.0 bits (119), Expect = 2e-07
 Identities = 34/214 (15%), Positives = 72/214 (33%), Gaps = 8/214 (3%)

Query: 17  SQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILL 76
            ++D    Q ++   L +I   + +    +     AI   + L  S    I   ++  L 
Sbjct: 110 GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG-AIPAFISLLASPHAHISEQAVWALG 168

Query: 77  NLSL-NPDLKQSLASMETIYRLNWIIQSSSSQET-VKLASSLICSLAMLDKNKARF---- 130
           N++      +  +     I  L  ++              +L  +L+ L +NK       
Sbjct: 169 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 228

Query: 131 GVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAV-RAGAVSELIHLIGSTEA 189
            V   +  LV+ +             +++ L          V + G V +L+ L+G+TE 
Sbjct: 229 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 288

Query: 190 EDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLM 223
             +     A+ N++   DE    +     +    
Sbjct: 289 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP 322

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 29/201 (14%), Positives = 70/201 (34%), Gaps = 13/201 (6%)

Query: 18  QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLN 77
            +        AL+ + +I   + +    +    GA++    L  +    I+  +   + N
Sbjct: 284 GATELPIVTPALRAIGNIVTGTDEQTQKVIDA-GALAVFPSLLTNPKTNIQKEATWTMSN 342

Query: 78  L-SLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAML--DKNKARFGVAG 134
           + +   D  Q + +   +      + S +  +T K A+  I +       +        G
Sbjct: 343 ITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 401

Query: 135 TVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGN-------STLAVRAGAVSELIHLIGST 187
            ++ L+  +SA        +L +++ + Q           S +    G + ++  L    
Sbjct: 402 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH- 460

Query: 188 EAEDLAGTSLAVLNLLARFDE 208
           E E +   SL ++      +E
Sbjct: 461 ENESVYKASLNLIEKYFSVEE 481

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 39/239 (16%), Positives = 84/239 (35%), Gaps = 11/239 (4%)

Query: 2   SAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLG-LS 60
           +   V  ++ + V    S++ E Q +A Q    +     Q         G I   +  L 
Sbjct: 51  NQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG 110

Query: 61  KSSSPIIRTLSLSILLNL-SLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICS 119
           K+    I+  S   L N+ S   +  +++     I     ++ S  +    + A   + +
Sbjct: 111 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA-HISEQAVWALGN 169

Query: 120 LAM-LDKNKARFGVAGTVQVLVKAVSAPSNP-----AGHHLLSSLAELVQFHGNSTLAVR 173
           +A      +      G +  L+  ++ P           +L  +L+ L +    +     
Sbjct: 170 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDA 229

Query: 174 -AGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRS 231
               +  L+ L+   + E LA +  A+  L    +E +  + K   +V  +V +L    
Sbjct: 230 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKG-VVPQLVKLLGATE 287

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 49.2 bits (117), Expect = 4e-07
 Identities = 31/227 (13%), Positives = 80/227 (35%), Gaps = 6/227 (2%)

Query: 6   VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLG-LSKSSS 64
           +++ +     +  SD  ++Q  A      I     +    +    G +  L+  + ++  
Sbjct: 85  LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP 144

Query: 65  PIIRTLSLSILLNL-SLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM- 122
            +++  +   L N+ S      + +   + +     ++  + S E  + A   + ++A  
Sbjct: 145 EMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGD 203

Query: 123 LDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNS-TLAVRAGAVSELI 181
               +        ++ ++   ++           +L+ L +        +V + A+  L 
Sbjct: 204 STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA 263

Query: 182 HLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLK 228
            LI S + E L     A+  L     E  I      +I   +V++L 
Sbjct: 264 KLIYSMDTETLVDACWAISYLSDGPQE-AIQAVIDVRIPKRLVELLS 309

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 27/213 (12%), Positives = 66/213 (30%), Gaps = 6/213 (2%)

Query: 18  QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLN 77
            S   E    A   ++ ++    +    +         L+ L    S +++T +L  + N
Sbjct: 267 YSMDTETLVDACWAISYLSDGPQEAIQAVIDV-RIPKRLVELLSHESTLVQTPALRAVGN 325

Query: 78  L-SLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTV 136
           + + N    Q + +   +  L  ++ S       +   ++    A   +       A  +
Sbjct: 326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 385

Query: 137 QVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRA----GAVSELIHLIGSTEAEDL 192
             LVK +             +++            +R     G +  L  L+   +   +
Sbjct: 386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445

Query: 193 AGTSLAVLNLLARFDEGMIALTKTDQIVSLMVD 225
             T  A+ N+L   +    A        +  ++
Sbjct: 446 EVTLDALENILKMGEADKEARGLNINENADFIE 478

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 48.7 bits (116), Expect = 6e-07
 Identities = 25/191 (13%), Positives = 69/191 (36%), Gaps = 5/191 (2%)

Query: 43  RSLLAQTDGAISTLLGLSKSSSPIIR---TLSLSILLNLSLNPDLKQSLASMETIYRLNW 99
              +A      S ++ +  S SP  +   T     LL+   NP + + +++   + R   
Sbjct: 12  NMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVE 71

Query: 100 IIQSSSSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSL 158
            ++   +      ++ ++ ++A  +  + R  + AG V + ++ +S+         + +L
Sbjct: 72  FLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWAL 131

Query: 159 AELVQFHGNS-TLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTD 217
             +           +    +  L+ L        +   ++  L+ L R         K  
Sbjct: 132 GNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVS 191

Query: 218 QIVSLMVDVLK 228
             ++++  +L 
Sbjct: 192 PCLNVLSWLLF 202

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 22/216 (10%), Positives = 62/216 (28%), Gaps = 6/216 (2%)

Query: 18  QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLN 77
                +    A   L+ ++         +    G    L+ L   +   + + +L  + N
Sbjct: 202 FVSDTDVLADACWALSYLSDGPNDKIQAVIDA-GVCRRLVELLMHNDYKVVSPALRAVGN 260

Query: 78  LSL-NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK-NKARFGVAGT 135
           +   +    Q + +   +  L  ++ S       K A   I ++   ++        A  
Sbjct: 261 IVTGDDIQTQVILNCSALQSLLHLLSSPKE-SIKKEACWTISNITAGNRAQIQTVIDANI 319

Query: 136 VQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLA--VRAGAVSELIHLIGSTEAEDLA 193
              L+  +             ++           +   V  G +  L  L+   +++ + 
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379

Query: 194 GTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKG 229
                + N+L   ++              +++   G
Sbjct: 380 VALNGLENILRLGEQEAKRNGTGINPYCALIEEAYG 415

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 23/213 (10%), Positives = 65/213 (30%), Gaps = 43/213 (20%)

Query: 17  SQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILL 76
            + ++   Q ++   L +I   +     ++ Q  GA+   + L  S    ++  ++  L 
Sbjct: 74  KRKENCTLQFESAWVLTNIASGNSLQTRIVIQ-AGAVPIFIELLSSEFEDVQEQAVWALG 132

Query: 77  NLSL-NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGT 135
           N++  +   +  +     +  L  +    +     + A   + +L         F     
Sbjct: 133 NIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-- 190

Query: 136 VQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGT 195
                                                 +  ++ L  L+  ++ + LA  
Sbjct: 191 --------------------------------------SPCLNVLSWLLFVSDTDVLADA 212

Query: 196 SLAVLNLLARFDEGMIALTKTDQIVSLMVDVLK 228
             A+  L    ++ + A+     +   +V++L 
Sbjct: 213 CWALSYLSDGPNDKIQAVIDAG-VCRRLVELLM 244

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 25/233 (10%), Positives = 68/233 (29%), Gaps = 14/233 (6%)

Query: 9   TINNCVSRSQSDSYEDQQKALQTLASITRVSP---------QYRSLLAQTDGAISTLLGL 59
           T  N  +  +      +   L   A                  R  +   +G  + L  L
Sbjct: 444 TFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCAL 503

Query: 60  SKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICS 119
           +K+ S   + L   +L  +    +L+  +     +  L  +     +++  + A+  +  
Sbjct: 504 AKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMAL-EGTEKGKRHATQALAR 562

Query: 120 LAMLDKNKARFGVAGTVQVLVKAV----SAPSNPAGHHLLSSLAELVQFHGNSTLAVRAG 175
           + +    +  F    ++ V+   +       +       L +L  L   + +    +   
Sbjct: 563 IGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKE 622

Query: 176 AVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLK 228
                I      +   L   +   L  L   ++ +      +  V  +  + +
Sbjct: 623 QGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE 675

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.98
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.97
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.97
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.97
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.97
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.96
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.96
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.96
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.95
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.95
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.95
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.94
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.94
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.94
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.93
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.93
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.93
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.93
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.93
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.92
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.92
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.92
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.92
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.92
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.91
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.91
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.91
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.89
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.85
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.84
3grl_A	651	General vesicular transport factor P115; vesicle t	99.62
3grl_A	651	General vesicular transport factor P115; vesicle t	99.61
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.43
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.4
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.34
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.27
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.27
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.24
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.23
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.2
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.99
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.93
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.92
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.87
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.86
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.76
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.73
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.68
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.64
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.63
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.6
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.56
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.56
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.51
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.48
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.47
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.44
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.43
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.42
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.41
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.41
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.41
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.31
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.24
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.15
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.13
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.07
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.0
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.95
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.95
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.83
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.8
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.79
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.67
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.46
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.32
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.29
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.26
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.22
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.07
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.06
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	96.99
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.93
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	96.85
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.69
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.59
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.59
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.58
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.49
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	96.38
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.3
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.15
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	96.09
2x19_B	963	Importin-13; nuclear transport, protein transport;	95.79
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	95.64
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	95.53
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	95.44
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	95.28
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	95.15
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	94.97
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	94.84
2x1g_F	971	Cadmus; transport protein, developmental protein,	94.79
2x19_B	963	Importin-13; nuclear transport, protein transport;	94.11
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	93.54
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	93.12
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	93.1
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	92.73
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	92.43
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	92.39
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	92.0
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	91.98
2x1g_F	971	Cadmus; transport protein, developmental protein,	91.16
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	90.05
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	89.66
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	89.5
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	89.0
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	88.83
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	87.96
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	86.8
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	86.8
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	86.27
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	84.83
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	84.25
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	83.83
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	83.82
2xpp_A	145	IWS1, ECU08_0440; transcription, elongation, histo	83.52
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	82.6
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	82.39
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	82.31
3gae_A	253	Protein DOA1; UFD3, CDC48, armadillo repeat, nucle	81.87
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	80.33

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=6.8e-33  Score=234.70  Aligned_cols=225  Identities=18%  Similarity=0.157  Sum_probs=198.2

Q ss_pred             HhHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHH
Q 044293            7 RETINNCVSRSQS-----------DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSIL   75 (236)
Q Consensus         7 ~~~i~~lv~~L~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L   75 (236)
                      .++++.|+.+|..           .+++.|+.|+++|.+++.+++.++..+....|+||.|+.+|+++++++++.|+++|
T Consensus        72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL  151 (354)
T 3nmw_A           72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL  151 (354)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHH
Confidence            3688999999952           24678999999999999988888988865425699999999999999999999999


Q ss_pred             HhhCCC--CchhHHhhhcccHHHHHHHHh-ccCCHHHHHHHHHHHHHhcc-cchhhhhhc-ccCcHHHHHHhhcCCCc--
Q 044293           76 LNLSLN--PDLKQSLASMETIYRLNWIIQ-SSSSQETVKLASSLICSLAM-LDKNKARFG-VAGTVQVLVKAVSAPSN--  148 (236)
Q Consensus        76 ~~l~~~--~~~~~~i~~~g~i~~L~~lL~-~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~-~~g~i~~Lv~lL~~~~~--  148 (236)
                      .||+..  +++|..+.+.|+||+|+++|. ++ +.++++.|+++|+||+. ++++|..+. ..|++|.|+++|.++++  
T Consensus       152 ~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~  230 (354)
T 3nmw_A          152 RNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN  230 (354)
T ss_dssp             HHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred             HHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcc
Confidence            999985  467999999999999999864 45 78999999999999998 668899998 69999999999998765  


Q ss_pred             --HHHHHHHHHHHHHhc----CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc-CChhhHHHHHhcCCcHH
Q 044293          149 --PAGHHLLSSLAELVQ----FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA-RFDEGMIALTKTDQIVS  221 (236)
Q Consensus       149 --~~~~~a~~aL~~L~~----~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g~~i~  221 (236)
                        .+++.|+++|+||+.    .+++++.+++.|++|.|+++|.+++ ..+++.|+++|.|++ .+++++..+++.|+ ++
T Consensus       231 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~-i~  308 (354)
T 3nmw_A          231 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQEALWDMGA-VS  308 (354)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSCHHHHHHHHHTTH-HH
T ss_pred             cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC-hHHHHHHHHHHHHHhCCCHHHHHHHHHCCC-HH
Confidence              488999999999996    7788989999999999999999875 679999999999999 57899999999997 89


Q ss_pred             HHHHHhhCCcccc
Q 044293          222 LMVDVLKGRSMFS  234 (236)
Q Consensus       222 ~lv~~l~~~~~~~  234 (236)
                      .|+++++++++..
T Consensus       309 ~Lv~LL~s~~~~i  321 (354)
T 3nmw_A          309 MLKNLIHSKHKMI  321 (354)
T ss_dssp             HHHTTTTCSSHHH
T ss_pred             HHHHHHhCCCHHH
Confidence            9999999877543

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.98  E-value=1.6e-31  Score=232.82  Aligned_cols=225  Identities=18%  Similarity=0.160  Sum_probs=197.4

Q ss_pred             HhHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHH
Q 044293            7 RETINNCVSRSQS-----------DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSIL   75 (236)
Q Consensus         7 ~~~i~~lv~~L~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L   75 (236)
                      .++++.|+.+|..           .+++.++.|+++|.+++.+++.++..+....|+||.|+.+|+++++++++.|+++|
T Consensus       188 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL  267 (458)
T 3nmz_A          188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL  267 (458)
T ss_dssp             TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence            3678899999942           24668999999999999988878888865426699999999999999999999999


Q ss_pred             HhhCCC--CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc-cchhhhhhc-ccCcHHHHHHhhcCCCc---
Q 044293           76 LNLSLN--PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM-LDKNKARFG-VAGTVQVLVKAVSAPSN---  148 (236)
Q Consensus        76 ~~l~~~--~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~-~~g~i~~Lv~lL~~~~~---  148 (236)
                      .||+..  +++|..|++.|+|++|+++|.++.+.++++.|+.+|+||+. +++++..+. ..|++|.|+++|.++++   
T Consensus       268 ~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~  347 (458)
T 3nmz_A          268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT  347 (458)
T ss_dssp             HHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSST
T ss_pred             HHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcch
Confidence            999985  46799999999999999986543378999999999999999 778999998 69999999999998765   


Q ss_pred             -HHHHHHHHHHHHHhc----CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc-CChhhHHHHHhcCCcHHH
Q 044293          149 -PAGHHLLSSLAELVQ----FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA-RFDEGMIALTKTDQIVSL  222 (236)
Q Consensus       149 -~~~~~a~~aL~~L~~----~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g~~i~~  222 (236)
                       .+++.|+++|+||+.    ++++++.+++.|++|.|+.+|.+++ ..+++.|+++|.|++ .+++++..+++.|+ ++.
T Consensus       348 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~-I~~  425 (458)
T 3nmz_A          348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQEALWDMGA-VSM  425 (458)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-HHHHHHHHHHHHHHHSSCHHHHHHHHHHTH-HHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-HHH
Confidence             388999999999995    6788889999999999999999875 679999999999999 57899999999997 899


Q ss_pred             HHHHhhCCccc
Q 044293          223 MVDVLKGRSMF  233 (236)
Q Consensus       223 lv~~l~~~~~~  233 (236)
                      |+++++.+++.
T Consensus       426 Lv~LL~s~~~~  436 (458)
T 3nmz_A          426 LKNLIHSKHKM  436 (458)
T ss_dssp             HHTTTTCSSHH
T ss_pred             HHHHHhCCCHH
Confidence            99999887654

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.97  E-value=4.2e-30  Score=206.54  Aligned_cols=222  Identities=19%  Similarity=0.227  Sum_probs=203.9

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-CchhH
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDLKQ   86 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~   86 (236)
                      +.|+.|+++|++++++++..|+++|.+++..+++++..+.+. |+++.|+.+|++++++++..++++|.+++.+ ++++.
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC-CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            468999999999999999999999999999988899999998 9999999999999999999999999999998 67799


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhc-ccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLA-MLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH  165 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~  165 (236)
                      .+.+.|+++.|+.+|+++ +++++..|+++|.+++ ..++++..+.+.|+++.|++++.++++.++..++++|++++...
T Consensus        81 ~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999988 8999999999999999 56788888999999999999999999999999999999999855


Q ss_pred             -CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCCccc
Q 044293          166 -GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGRSMF  233 (236)
Q Consensus       166 -~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~~~~  233 (236)
                       ..+..+.+.|++|.|++++.+++ +.++..|+.+|.+++. +++.+..+.+.|+ ++.|+++++++++.
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~  227 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPTSAIKAIVDAGG-VEVLQKLLTSTDSE  227 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSBHHHHHHHHHTTH-HHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-HHHHHHHHCCCcHH
Confidence             45577889999999999999874 7899999999999997 6788888999886 89999999887653

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.97  E-value=5.4e-31  Score=209.87  Aligned_cols=200  Identities=19%  Similarity=0.184  Sum_probs=176.2

Q ss_pred             HHHhHHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-
Q 044293            5 RVRETINNCVSRSQSDSY--EDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-   81 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~--~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-   81 (236)
                      ++.-+||.+|++|+++++  +++..|++.|++++..+++++..+.+. |+||.||++|+++++++|+.|+++|.||+.+ 
T Consensus         5 ~~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~-G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~   83 (233)
T 3tt9_A            5 DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQL-RGILKLLQLLKVQNEDVQRAVCGALRNLVFED   83 (233)
T ss_dssp             CCCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT-THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             chhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence            345679999999998887  889999999999999889999999998 9999999999999999999999999999984 


Q ss_pred             CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhc---C-------------
Q 044293           82 PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVS---A-------------  145 (236)
Q Consensus        82 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~-------------  145 (236)
                      +++|..|.+.|+||+|+++|+++.+.+++++|+++|++|+..+.+|..|.+ +++|+|++++.   +             
T Consensus        84 ~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~  162 (233)
T 3tt9_A           84 NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGL  162 (233)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCccccccccccc
Confidence            689999999999999999998532899999999999999999999999987 57999998763   1             


Q ss_pred             CCcHHHHHHHHHHHHHhcC-CCChHHHHHh-CcHHHHHHHhcCC-----ChhhHHHHHHHHHHHHcCC
Q 044293          146 PSNPAGHHLLSSLAELVQF-HGNSTLAVRA-GAVSELIHLIGST-----EAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       146 ~~~~~~~~a~~aL~~L~~~-~~~~~~~~~~-g~i~~lv~ll~~~-----~~~~~~~~a~~~L~~l~~~  206 (236)
                      .+..++++|..+|+||+.. +++|+.+.+. |+|+.|+.+++.+     .+...+|+|+++|.||+..
T Consensus       163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            1457899999999999985 5899999985 7799999999862     1246789999999999964

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=1.1e-30  Score=228.66  Aligned_cols=175  Identities=17%  Similarity=0.151  Sum_probs=159.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-CchhHH
Q 044293            9 TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDLKQS   87 (236)
Q Consensus         9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~   87 (236)
                      +||.+|.+|+++++++|..|+++|++++.+++.++..+.+. |+||.|+.+|++++++++..|+++|.||+.+ +++|..
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~-g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHT-THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            68999999999999999999999999998887888899998 9999999999999999999999999999997 788999


Q ss_pred             hhhcccHHHHHHHHh-ccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhh--------cCC--------CcHH
Q 044293           88 LASMETIYRLNWIIQ-SSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAV--------SAP--------SNPA  150 (236)
Q Consensus        88 i~~~g~i~~L~~lL~-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL--------~~~--------~~~~  150 (236)
                      +++.|+||+|+++|+ ++ ++++++.|+++|+||+.++++|..+.+ |++|+|+++|        .++        +..+
T Consensus        82 i~~~G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v  159 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHcCCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence            999999999999999 66 899999999999999999999999999 9999999999        332        2345


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHh-CcHHHHHHHhcC
Q 044293          151 GHHLLSSLAELVQFHGNSTLAVRA-GAVSELIHLIGS  186 (236)
Q Consensus       151 ~~~a~~aL~~L~~~~~~~~~~~~~-g~i~~lv~ll~~  186 (236)
                      .+.|+++|+|||.+++++..+++. |++|.|+.+|.+
T Consensus       160 ~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~  196 (457)
T 1xm9_A          160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN  196 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHh
Confidence            669999999999998888999987 999999988863

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.97  E-value=6.2e-30  Score=206.31  Aligned_cols=223  Identities=17%  Similarity=0.198  Sum_probs=201.9

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC-CCchh
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL-NPDLK   85 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~   85 (236)
                      .+..+.++.+|++++++++..|++.|+++...++.++..+.+. |++|.|+.+|++++++++..|+++|.+++. +++++
T Consensus        11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHc-CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            4567899999999999999999999977665567788899998 999999999999999999999999999998 46779


Q ss_pred             HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhh-hhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293           86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNK-ARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF  164 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~  164 (236)
                      ..+.+.|+++.|+.+|+++ +++++..|+++|.+++..+.++ ..+.+.|+++.|+++|.++++.++..++++|.+|+.+
T Consensus        90 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999998 8999999999999999999888 8888899999999999999999999999999999985


Q ss_pred             C-CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCCccc
Q 044293          165 H-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGRSMF  233 (236)
Q Consensus       165 ~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~~~~  233 (236)
                      . +++..+.+.|++|.|++++.+++ +.+++.|+.+|.+++. +++.+..+.+.|+ ++.|+++++++++.
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~-i~~L~~ll~~~~~~  237 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQKQAVKEAGA-LEKLEQLQSHENEK  237 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSS-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHTTTTCSSSH
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCc-HHHHHHHhCCCCHH
Confidence            4 56677888999999999999874 7899999999999994 6788889999886 89999999987764

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=6.2e-29  Score=217.64  Aligned_cols=221  Identities=16%  Similarity=0.151  Sum_probs=190.8

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc-CCChHHHHHHHHHHHhhCCCCchh
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK-SSSPIIRTLSLSILLNLSLNPDLK   85 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~   85 (236)
                      .+.||.|+++|++++++++..|+++|++++..+++++..+.+. |+||.|+.+|+ ++++++++.++++|+||+.++++|
T Consensus        43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~-G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~  121 (457)
T 1xm9_A           43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ-NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK  121 (457)
T ss_dssp             TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHT-TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhH
Confidence            4689999999999999999999999999999889999999998 99999999999 889999999999999999999999


Q ss_pred             HHhhhcccHHHHHHHHh--------cc-------CCHHHHHHHHHHHHHhcccchhhhhhccc-CcHHHHHHhhcC----
Q 044293           86 QSLASMETIYRLNWIIQ--------SS-------SSQETVKLASSLICSLAMLDKNKARFGVA-GTVQVLVKAVSA----  145 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~--------~~-------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~----  145 (236)
                      ..+++ |++|+|+++|.        ++       .+++++++|+++|+||+.+++++..+.+. |++++|+.+|++    
T Consensus       122 ~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~  200 (457)
T 1xm9_A          122 EELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA  200 (457)
T ss_dssp             HHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccc
Confidence            99999 99999999993        22       14567779999999999998899999987 999999988863    


Q ss_pred             --C-----------------------------------------------------------------------------
Q 044293          146 --P-----------------------------------------------------------------------------  146 (236)
Q Consensus       146 --~-----------------------------------------------------------------------------  146 (236)
                        .                                                                             
T Consensus       201 ~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  280 (457)
T 1xm9_A          201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY  280 (457)
T ss_dssp             TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGG
T ss_pred             cCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh
Confidence              1                                                                             


Q ss_pred             ----------------CcHHHHHHHHHHHHHhcCCCCh-----HHHH-HhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          147 ----------------SNPAGHHLLSSLAELVQFHGNS-----TLAV-RAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       147 ----------------~~~~~~~a~~aL~~L~~~~~~~-----~~~~-~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                                      ++.+++.|+++|+|+|......     +.++ +.|++|.|+++|.+++ .+++..|+++|.|++
T Consensus       281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~-~~v~~~A~~aL~nls  359 (457)
T 1xm9_A          281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN-SDVVRSGASLLSNMS  359 (457)
T ss_dssp             SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSC-HHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCC-HhHHHHHHHHHHHHh
Confidence                            1234556789999999865432     2233 5899999999999985 789999999999999


Q ss_pred             CChhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293          205 RFDEGMIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       205 ~~~~~~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                      .+++++..+.. |+ +++|+++|..+++
T Consensus       360 ~~~~~~~~i~~-~~-i~~Lv~lL~~~~~  385 (457)
T 1xm9_A          360 RHPLLHRVMGN-QV-FPEVTRLLTSHTG  385 (457)
T ss_dssp             TSGGGHHHHHH-HT-HHHHHHTTTSCCS
T ss_pred             cCHHHHHHHHH-hh-hHHHHHhccCCCC
Confidence            99998887765 66 8999999998755

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=2.6e-29  Score=212.75  Aligned_cols=199  Identities=18%  Similarity=0.138  Sum_probs=180.1

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhh-ccCCChHHHHHHHHHHHhhCC-CCch
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGL-SKSSSPIIRTLSLSILLNLSL-NPDL   84 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~-~~~~   84 (236)
                      +.||.|+++|+++++++++.|+++|++++.. ++++|..+.+. |+||.|+.+ ++++++++++.++.+|+||+. ++++
T Consensus       127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~-G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n  205 (354)
T 3nmw_A          127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN  205 (354)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHC-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence            4599999999999999999999999999985 67899999998 999999997 567788999999999999999 5578


Q ss_pred             hHHhh-hcccHHHHHHHHhccCCH---HHHHHHHHHHHHhcc----cchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHH
Q 044293           85 KQSLA-SMETIYRLNWIIQSSSSQ---ETVKLASSLICSLAM----LDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLS  156 (236)
Q Consensus        85 ~~~i~-~~g~i~~L~~lL~~~~~~---~~~~~a~~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~  156 (236)
                      |..+. ..|+|++|+++|+++.+.   ++++.|+++|+||+.    +++++..+.+.|++|+|+++|++++..+++.|++
T Consensus       206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~  285 (354)
T 3nmw_A          206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG  285 (354)
T ss_dssp             HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence            88888 799999999999976322   689999999999995    7889999999999999999999999999999999


Q ss_pred             HHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh
Q 044293          157 SLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE  208 (236)
Q Consensus       157 aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~  208 (236)
                      +|+||+. +++++..+++.|++|+|+++|.+++ ..+++.|+.+|.||+.+..
T Consensus       286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~-~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCCH
Confidence            9999995 6788999999999999999999874 7889999999999997643

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.97  E-value=2.7e-29  Score=223.64  Aligned_cols=198  Identities=13%  Similarity=0.134  Sum_probs=176.5

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC--Cch
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN--PDL   84 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~   84 (236)
                      .+.|+.||.+|+++++++|..|+++|++++..++++|..+.+. |+||.||.+|+++++++++.|+++|.||+.+  +++
T Consensus        47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~-G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKL-KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred             cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHc-CCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence            4579999999999999999999999999999889999999998 9999999999999999999999999999985  789


Q ss_pred             hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhc------------------CC
Q 044293           85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVS------------------AP  146 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~------------------~~  146 (236)
                      |..|++.|+|++|+++|+++.+.+++++|+++|++|+.++++|..|.+ +++|+|++++.                  ..
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~  204 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIE  204 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccc
Confidence            999999999999999999854789999999999999999999999995 67999999872                  12


Q ss_pred             CcHHHHHHHHHHHHHhcCCC-ChHHHHHh-CcHHHHHHHhcCC-----ChhhHHHHHHHHHHHHcCC
Q 044293          147 SNPAGHHLLSSLAELVQFHG-NSTLAVRA-GAVSELIHLIGST-----EAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       147 ~~~~~~~a~~aL~~L~~~~~-~~~~~~~~-g~i~~lv~ll~~~-----~~~~~~~~a~~~L~~l~~~  206 (236)
                      +..++++|+++|+||+...+ +|+.+++. |+++.|+.+++..     .+...+++|+++|.||+..
T Consensus       205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~  271 (584)
T 3l6x_A          205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQ  271 (584)
T ss_dssp             CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcc
Confidence            45788999999999999764 58888884 6678999999742     2346889999999999976

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.96  E-value=3.5e-28  Score=190.98  Aligned_cols=199  Identities=19%  Similarity=0.202  Sum_probs=179.5

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-Cc
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PD   83 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~   83 (236)
                      +..+..+.|+.+|++++++++..|+++|.+++..+++++..+.+. |+++.|+.+|++++++++..|+++|.+++.+ ++
T Consensus         9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNE   87 (210)
T ss_dssp             ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence            446788999999999999999999999999998888999999998 9999999999999999999999999999965 56


Q ss_pred             hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293           84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV  162 (236)
Q Consensus        84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~  162 (236)
                      ++..+.+.|+++.|+++|+++ ++.++..|+++|.+++... +.+..+.+.|+++.|++++.++++.++..|+++|.+++
T Consensus        88 ~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  166 (210)
T 4db6_A           88 QIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA  166 (210)
T ss_dssp             HHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            788899999999999999999 8999999999999999654 55677788999999999999999999999999999999


Q ss_pred             cC-CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293          163 QF-HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       163 ~~-~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~  206 (236)
                      .+ ++++..+.+.|+++.|++++.+++ +.+++.|+.+|.+|+.+
T Consensus       167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          167 SGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHCC-
T ss_pred             cCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHhcC
Confidence            87 677888899999999999999874 78999999999999863

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.96  E-value=2.3e-28  Score=212.94  Aligned_cols=199  Identities=18%  Similarity=0.143  Sum_probs=179.9

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhh-ccCCChHHHHHHHHHHHhhCC-CCc
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGL-SKSSSPIIRTLSLSILLNLSL-NPD   83 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~-~~~   83 (236)
                      .+.||.|+.+|++++++++..|+++|++++.. ++++|..+.+. |+||.|+.+ ++++++.+++.++.+|+||+. +++
T Consensus       242 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~-GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~  320 (458)
T 3nmz_A          242 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALWNLSAHCTE  320 (458)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT-THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             CCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHH
Confidence            34599999999999999999999999999985 67899999998 999999997 566788999999999999999 668


Q ss_pred             hhHHhh-hcccHHHHHHHHhccCCH---HHHHHHHHHHHHhcc----cchhhhhhcccCcHHHHHHhhcCCCcHHHHHHH
Q 044293           84 LKQSLA-SMETIYRLNWIIQSSSSQ---ETVKLASSLICSLAM----LDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLL  155 (236)
Q Consensus        84 ~~~~i~-~~g~i~~L~~lL~~~~~~---~~~~~a~~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~  155 (236)
                      +|..|. ..|+|++|+.+|.++.+.   ++++.|+++|+||+.    +++++..+.+.|++|+|+.+|.+++..+++.|+
T Consensus       321 nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~  400 (458)
T 3nmz_A          321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC  400 (458)
T ss_dssp             HHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHH
Confidence            888888 799999999999976322   589999999999995    778899999999999999999999999999999


Q ss_pred             HHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh
Q 044293          156 SSLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD  207 (236)
Q Consensus       156 ~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~  207 (236)
                      ++|+||+. +++++..+++.|++|+|+++|..++ ..+++.|+.+|.||+.+.
T Consensus       401 ~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~-~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          401 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCC
Confidence            99999995 6788999999999999999998874 788999999999999754

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.96  E-value=4.9e-28  Score=215.55  Aligned_cols=224  Identities=14%  Similarity=0.107  Sum_probs=187.0

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCCch
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNPDL   84 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~   84 (236)
                      .+.||.||++|+++++++|+.|+++|++++.. ++++|..+.+. |+||.|+.+|++ .+.++++.++.+|++|+.++++
T Consensus        89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~-GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~  167 (584)
T 3l6x_A           89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNC-DGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI  167 (584)
T ss_dssp             TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHT-THHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG
T ss_pred             cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHc-CCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence            46899999999999999999999999999985 68999999998 999999999987 5788999999999999999999


Q ss_pred             hHHhhhcccHHHHHHHHh-----------------ccCCHHHHHHHHHHHHHhcccc-hhhhhhcc-cCcHHHHHHhhcC
Q 044293           85 KQSLASMETIYRLNWIIQ-----------------SSSSQETVKLASSLICSLAMLD-KNKARFGV-AGTVQVLVKAVSA  145 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~-----------------~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~-~g~i~~Lv~lL~~  145 (236)
                      |..|++ ++|++|++++.                 +..+++++++|+++|+||+.+. +++..+.+ .|+++.|+.++++
T Consensus       168 k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~  246 (584)
T 3l6x_A          168 KMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA  246 (584)
T ss_dssp             HHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred             hHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence            999985 57999999872                 1115799999999999999877 45888887 6778899999974


Q ss_pred             ------CCcHHHHHHHHHHHHHhcCC--------------------------CChHHHHHhCcHHHHHHHhcCCChhhHH
Q 044293          146 ------PSNPAGHHLLSSLAELVQFH--------------------------GNSTLAVRAGAVSELIHLIGSTEAEDLA  193 (236)
Q Consensus       146 ------~~~~~~~~a~~aL~~L~~~~--------------------------~~~~~~~~~g~i~~lv~ll~~~~~~~~~  193 (236)
                            .+...+++|+++|+|||...                          .+...+++.++++.++.+|..+..+.++
T Consensus       247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~  326 (584)
T 3l6x_A          247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL  326 (584)
T ss_dssp             HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred             hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence                  45678999999999999641                          1122234456788899999765457899


Q ss_pred             HHHHHHHHHHcCCh-----hhHHHHHhcCCcHHHHHHHhhCCccc
Q 044293          194 GTSLAVLNLLARFD-----EGMIALTKTDQIVSLMVDVLKGRSMF  233 (236)
Q Consensus       194 ~~a~~~L~~l~~~~-----~~~~~i~~~g~~i~~lv~~l~~~~~~  233 (236)
                      +.|+++|.||+.+.     ..+..+.+++| +|.|+++|+.++..
T Consensus       327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~g-lp~Lv~LL~s~~~~  370 (584)
T 3l6x_A          327 EASAGAIQNLCAGRWTYGRYIRSALRQEKA-LSAIADLLTNEHER  370 (584)
T ss_dssp             HHHHHHHHHHHSSCSHHHHHHHHHHTSHHH-HHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHHHcCCccccHHHHHHHHHcCc-HHHHHHHHcCCCHH
Confidence            99999999998652     34566777787 89999999987753

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.95  E-value=1.1e-27  Score=219.76  Aligned_cols=225  Identities=15%  Similarity=0.132  Sum_probs=193.6

Q ss_pred             HHHhHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC
Q 044293            5 RVRETINNCVSRSQSD--SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP   82 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~   82 (236)
                      .+.+.++.|+++|.++  +++++..|++.|.+++.+ ++.|+.++...|++|.|+.+|+++++.++..++++|.|++.+.
T Consensus       374 ~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~  452 (810)
T 3now_A          374 AALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAY  452 (810)
T ss_dssp             HHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCS
T ss_pred             cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCc
Confidence            4567789999999877  889999999999999987 6777777754499999999999999999999999999999854


Q ss_pred             c------------------------------hh---HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhh
Q 044293           83 D------------------------------LK---QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKAR  129 (236)
Q Consensus        83 ~------------------------------~~---~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~  129 (236)
                      +                              ++   +.+++.|++|+|+.+|+++ ++++++.|+|+|.|++.+++++..
T Consensus       453 d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~-s~~vqe~Aa~aL~NLA~d~~~r~~  531 (810)
T 3now_A          453 EKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE-SHNSQELIARVLNAVCGLKELRGK  531 (810)
T ss_dssp             CCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC-CHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             hhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHH
Confidence            2                              12   5677899999999999998 899999999999999999999999


Q ss_pred             hcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHH---HHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293          130 FGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLA---VRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       130 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~---~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~  206 (236)
                      +.+.|++|+|+.+|.++++..++.|+++|.+|+.+......+   ...|++|+|+++|..++.......|+.+|.||+.+
T Consensus       532 Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~  611 (810)
T 3now_A          532 VVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM  611 (810)
T ss_dssp             HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999865433322   12479999999998653333446899999999986


Q ss_pred             -hhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293          207 -DEGMIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       207 -~~~~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                       ++.+..+++.|| ++.|+.++.++++
T Consensus       612 ~d~~~~~Ii~aG~-l~~Lv~LL~s~~~  637 (810)
T 3now_A          612 NESVRQRIIKEQG-VSKIEYYLMEDHL  637 (810)
T ss_dssp             CHHHHHHHHHTTH-HHHHHHHHHSCCT
T ss_pred             CHHHHHHHHHcCC-HHHHHHHHcCCCH
Confidence             588999999998 8999999987665

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=4.5e-27  Score=189.47  Aligned_cols=197  Identities=19%  Similarity=0.183  Sum_probs=180.6

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh-
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK-   85 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~-   85 (236)
                      .+.|+.|+++|++++++++..|+++|.+++.++++++..+.+. |+++.|+.+|+++++++++.|+++|.+++.+++++ 
T Consensus        53 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  131 (252)
T 4db8_A           53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQI  131 (252)
T ss_dssp             TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHH
Confidence            3688999999999999999999999999999889999999998 99999999999999999999999999999999987 


Q ss_pred             HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293           86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF  164 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~  164 (236)
                      ..+.+.|+++.|+++|+++ +++++..|+++|.+++..+ +++..+.+.|+++.|++++.++++.++..|+++|.+++..
T Consensus       132 ~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  210 (252)
T 4db8_A          132 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  210 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC
Confidence            8888999999999999988 8999999999999999854 6677777899999999999999999999999999999964


Q ss_pred             -CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293          165 -HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       165 -~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~  206 (236)
                       ++++..+.+.|+++.+++++.+++ +++++.|+.+|.||+.+
T Consensus       211 ~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~A~~~L~~l~~~  252 (252)
T 4db8_A          211 GNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEALEKLQSH  252 (252)
T ss_dssp             CHHHHHHHHHTTHHHHHHTTTTCSS-SHHHHTHHHHHHTTC--
T ss_pred             CHHHHHHHHHCCcHHHHHHHhCCCC-HHHHHHHHHHHHHHhcC
Confidence             566778889999999999999874 78999999999999853

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.95  E-value=5.2e-27  Score=215.34  Aligned_cols=222  Identities=13%  Similarity=0.108  Sum_probs=196.4

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS   87 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~   87 (236)
                      +.||.|+.+|+++++.+|+.|+++|.+++.+ +++|..+.++ |++|+|+.+|+++++..++.|+++|.+++.+.+....
T Consensus       495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~-Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~  572 (810)
T 3now_A          495 GITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQE-GGVKALLRMALEGTEKGKRHATQALARIGITINPEVS  572 (810)
T ss_dssp             THHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHC-CCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence            6899999999999999999999999999975 7799999998 9999999999999999999999999999876554433


Q ss_pred             hh---hcccHHHHHHHHhccCCHHHHHHHHHHHHHhccc-chhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293           88 LA---SMETIYRLNWIIQSSSSQETVKLASSLICSLAML-DKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus        88 i~---~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~  163 (236)
                      +.   ..|++|+|+.+|.++.+...+..|+++|.||+.. ++++..+.+.|+++.|+.+|.++++.+++.|+++|+||+.
T Consensus       573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~  652 (810)
T 3now_A          573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM  652 (810)
T ss_dssp             TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred             hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            32   2579999999998653445567899999999987 4788899999999999999999999999999999999999


Q ss_pred             CCCChHHHHH-hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHh-cCCcHHHHHHHhhCCccc
Q 044293          164 FHGNSTLAVR-AGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTK-TDQIVSLMVDVLKGRSMF  233 (236)
Q Consensus       164 ~~~~~~~~~~-~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~-~g~~i~~lv~~l~~~~~~  233 (236)
                      +++.+..+++ .|+++.|+.++...+ ..+++.|+++|.|++. +++....+++ .|+ ++.|++++++++..
T Consensus       653 ~~~~~~~~v~~~g~l~~Lv~LL~s~d-~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~-I~~Lv~LL~s~d~~  723 (810)
T 3now_A          653 SEDVIKMFEGNNDRVKFLALLCEDED-EETATACAGALAIITSVSVKCCEKILAIASW-LDILHTLIANPSPA  723 (810)
T ss_dssp             SHHHHHHHHSSSSHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHCHHHHHHHHTSTTH-HHHHHHHHTCSSHH
T ss_pred             ChHHHHHHHhccCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHCCCCHH
Confidence            9988888886 799999999999874 7899999999999998 7888888888 776 89999999987643

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.95  E-value=1.5e-27  Score=190.01  Aligned_cols=178  Identities=11%  Similarity=0.146  Sum_probs=159.2

Q ss_pred             CcHHHHHhhccCCCh--HHHHHHHHHHHhhCC-CCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc-cchh
Q 044293           51 GAISTLLGLSKSSSP--IIRTLSLSILLNLSL-NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM-LDKN  126 (236)
Q Consensus        51 g~i~~Lv~lL~~~~~--~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~-~~~~  126 (236)
                      -.+|.||++|+++++  +++..|+++|.+++. ++++|..|.+.|+||+|+++|+++ ++++++.|+++|.||+. +++|
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHH
Confidence            358999999999988  889999999999996 567899999999999999999998 89999999999999997 5789


Q ss_pred             hhhhcccCcHHHHHHhhc-CCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcC---C------------Chh
Q 044293          127 KARFGVAGTVQVLVKAVS-APSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGS---T------------EAE  190 (236)
Q Consensus       127 ~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~---~------------~~~  190 (236)
                      |..|.+.|+||+|+++|+ +++..+++.++.+|++|+..+++|..+++. ++|+|++++..   +            .+.
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~  165 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF  165 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence            999999999999999998 578899999999999999999999998874 69999987631   0            135


Q ss_pred             hHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCC
Q 044293          191 DLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGR  230 (236)
Q Consensus       191 ~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~  230 (236)
                      +++++|..+|.||+. ++++|..|++++|+|+.|+.+++.+
T Consensus       166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~  206 (233)
T 3tt9_A          166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGT  206 (233)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhh
Confidence            789999999999987 6799999999988889999999864

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.95  E-value=1.4e-26  Score=205.31  Aligned_cols=223  Identities=15%  Similarity=0.156  Sum_probs=194.6

Q ss_pred             HhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-ch
Q 044293            7 RETINNCVSRSQS-DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DL   84 (236)
Q Consensus         7 ~~~i~~lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~   84 (236)
                      .+.||.||++|++ +++++|..|+++|.+++..++++++.+++. |+||.|+.+|+++++++++.|+++|+|++.+. ..
T Consensus        99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~-GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~  177 (510)
T 3ul1_B           99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG-GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF  177 (510)
T ss_dssp             TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            3579999999974 568899999999999999999999999998 99999999999999999999999999999985 55


Q ss_pred             hHHhhhcccHHHHHHHHhccC----CHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHH
Q 044293           85 KQSLASMETIYRLNWIIQSSS----SQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLA  159 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~----~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~  159 (236)
                      |..+.+.|++++|+.+++..+    ....+..++++|.+++........+.. .|++|.|++++.+.++.++..++++|+
T Consensus       178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~  257 (510)
T 3ul1_B          178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS  257 (510)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            888889999999999998652    346788999999999998766655544 789999999999999999999999999


Q ss_pred             HHhcCCCChH-HHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293          160 ELVQFHGNST-LAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       160 ~L~~~~~~~~-~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                      +|+.++.++. .+.+.|++|.|+.+|.+.+ ..++..++.+|.|++. +++.+..+.+.|+ ++.|+.+++++++
T Consensus       258 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~al~aL~nl~~~~~~~~~~i~~~g~-l~~L~~LL~~~~~  330 (510)
T 3ul1_B          258 YLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGA-LAVFPSLLTNPKT  330 (510)
T ss_dssp             HHTSSCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTG-GGGCC-CTTCSSH
T ss_pred             HHhhchhhhHHHHHhcccchhhhhhhcCCC-hhhhhHHHHHHHHhhcCCHHHHHHHhhccc-hHHHHHHhcCCCH
Confidence            9998776554 5667999999999999875 7899999999999986 5677888889887 7999999987654

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=4.8e-26  Score=182.78  Aligned_cols=198  Identities=19%  Similarity=0.191  Sum_probs=181.6

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCC-CCchhH
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSL-NPDLKQ   86 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~   86 (236)
                      +.|+.|+++|++++++++..++++|.+++.++++++..+.+. |+++.|+.+|++++++++..++++|.+++. +++++.
T Consensus        44 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  122 (252)
T 4hxt_A           44 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK  122 (252)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            689999999999999999999999999999889999999998 999999999999999999999999999994 567788


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-C
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ-F  164 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~  164 (236)
                      .+.+.|+++.|+++++++ +++++..++++|.+++... +.+..+.+.|+++.|+.++.++++.++..++++|.+++. +
T Consensus       123 ~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  201 (252)
T 4hxt_A          123 AIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  201 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB
T ss_pred             HHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence            899999999999999998 8999999999999999854 555778889999999999999999999999999999998 4


Q ss_pred             CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh
Q 044293          165 HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE  208 (236)
Q Consensus       165 ~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~  208 (236)
                      ++.+..+.+.|+++.+++++.+++ +.+++.|+.+|.|++..+.
T Consensus       202 ~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          202 TSAIKAIVDAGGVEVLQKLLTSTD-SEVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHTCB
T ss_pred             HHHHHHHHHCCCHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCCC
Confidence            566778889999999999999875 7899999999999986543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.95  E-value=7.2e-26  Score=201.52  Aligned_cols=223  Identities=15%  Similarity=0.155  Sum_probs=196.5

Q ss_pred             HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-ch
Q 044293            7 RETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DL   84 (236)
Q Consensus         7 ~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~   84 (236)
                      .+.||.||++|+ ++++++|..|+++|.+++.++++++..+.+. |+||.|+.+|.++++++++.|+++|+|++.+. ++
T Consensus       118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~-Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~  196 (529)
T 3tpo_A          118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG-GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF  196 (529)
T ss_dssp             TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH
Confidence            468999999996 4568999999999999999988999999998 99999999999999999999999999999875 56


Q ss_pred             hHHhhhcccHHHHHHHHhccC----CHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHH
Q 044293           85 KQSLASMETIYRLNWIIQSSS----SQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLA  159 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~----~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~  159 (236)
                      |..+.+.|++++|+.+|....    ....+..++++|.+++........+.. .|++|.|++++.++++.++..++++|.
T Consensus       197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~  276 (529)
T 3tpo_A          197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS  276 (529)
T ss_dssp             HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            889999999999999998652    356788999999999998766655544 789999999999999999999999999


Q ss_pred             HHhcCCCCh-HHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293          160 ELVQFHGNS-TLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       160 ~L~~~~~~~-~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                      +++.++.++ ..+++.|++|.|+.+|.+.+ ..++..|+.+|.|++. +++.+..+...|+ ++.|+.+++++++
T Consensus       277 ~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~-l~~L~~LL~~~~~  349 (529)
T 3tpo_A          277 YLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGA-LAVFPSLLTNPKT  349 (529)
T ss_dssp             HHHSSCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTG-GGGHHHHTTCSSH
T ss_pred             HhhhhhhhhHHHHHhccchHHHHHHhcCCC-hhHHHHHHHHHHHHHccchHHHHHHhhccc-HHHHHHHHcCCCH
Confidence            999977555 45677999999999999875 7899999999999986 5678888999987 8999999987654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.94  E-value=1.6e-25  Score=198.52  Aligned_cols=220  Identities=14%  Similarity=0.133  Sum_probs=185.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCC-chh
Q 044293            9 TINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNP-DLK   85 (236)
Q Consensus         9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~-~~~   85 (236)
                      .|+.+|+.+++++++.|..|+..++++... .....+.+++. |+||.||++|++ +++++|..|+++|.|++.++ +++
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~-G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~  136 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRA-GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  136 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHT-THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHC-CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            489999999999999999999999986543 22235778888 999999999975 46899999999999998765 568


Q ss_pred             HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCc-----HHHHHHHHHHH
Q 044293           86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSN-----PAGHHLLSSLA  159 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~-----~~~~~a~~aL~  159 (236)
                      ..+++.|+||.|+.+|+++ +.++++.|+++|.|++.+. +.+..+.+.|++++|+.++.+.+.     ...+.++++|.
T Consensus       137 ~~vv~~GaIp~Lv~lL~s~-~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~  215 (510)
T 3ul1_B          137 KAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  215 (510)
T ss_dssp             HHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence            8899999999999999998 8999999999999999864 678888889999999999987653     35788999999


Q ss_pred             HHhcCCCChHH-HHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhh-HHHHHhcCCcHHHHHHHhhCCcc
Q 044293          160 ELVQFHGNSTL-AVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEG-MIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       160 ~L~~~~~~~~~-~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                      +++.+...... ....|++|.|+.++.+.+ .+++..|+++|.+|+.+++. ...+...|+ ++.|++++++.++
T Consensus       216 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~-i~~Lv~lL~~~~~  288 (510)
T 3ul1_B          216 NLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKGV-VPQLVKLLGATEL  288 (510)
T ss_dssp             HHHCCCSSCCCHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSCHHHHHHHHTTTC-HHHHHHHHTCSCH
T ss_pred             HHhhcccchhHHHHHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHhhchhhhHHHHHhccc-chhhhhhhcCCCh
Confidence            99997655444 345789999999999885 78999999999999987654 455666665 8999999987654

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.94  E-value=7.9e-25  Score=180.90  Aligned_cols=208  Identities=14%  Similarity=0.147  Sum_probs=179.5

Q ss_pred             hHHHhHHHHHHHHhcCCC------------HHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHh-hccCCChHHHHH
Q 044293            4 PRVRETINNCVSRSQSDS------------YEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLG-LSKSSSPIIRTL   70 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~~------------~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~   70 (236)
                      ++..+.++..+..|++++            .+.+..|+..|..++.+ .++...|.+. |++|.|+. +|+++++.+++.
T Consensus        24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~-G~l~~Lv~~lL~s~~~~vr~~  101 (296)
T 1xqr_A           24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQL-SGMHLLVGRYLEAGAAGLRWR  101 (296)
T ss_dssp             HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHTTTTCSSHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHc-CCHHHHHHHHHcCCCHHHHHH
Confidence            555677888888887652            24677899999999986 6788889998 99999999 999999999999


Q ss_pred             HHHHHHhhCCCC-chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCc
Q 044293           71 SLSILLNLSLNP-DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSN  148 (236)
Q Consensus        71 a~~~L~~l~~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~  148 (236)
                      |+++|.+++.+. ..+..+++.|++++|+.+|+++.+..+++.|+++|.+++... .....+.+.|++|.|+.+|+++++
T Consensus       102 Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~  181 (296)
T 1xqr_A          102 AAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ  181 (296)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCH
Confidence            999999999875 468888899999999999996436899999999999999765 456677789999999999999999


Q ss_pred             HHHHHHHHHHHHHhcC-CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC-hhhHHHHH
Q 044293          149 PAGHHLLSSLAELVQF-HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF-DEGMIALT  214 (236)
Q Consensus       149 ~~~~~a~~aL~~L~~~-~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~  214 (236)
                      .++..|+++|.+++.+ ++.+..+++.|++|+|+.+|.+.+ ..+++.|+.+|.+++.. +.....+.
T Consensus       182 ~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d-~~v~~~al~aL~~l~~~~~~~~~~~~  248 (296)
T 1xqr_A          182 KLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH-SPFHEHVLGALCSLVTDFPQGVRECR  248 (296)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCC-STHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCC-hhHHHHHHHHHHHHHhCChhHHHHHh
Confidence            9999999999999985 667888999999999999999874 78999999999999976 44444443

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.94  E-value=5.8e-25  Score=195.21  Aligned_cols=221  Identities=12%  Similarity=0.109  Sum_probs=196.4

Q ss_pred             HhHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-ch
Q 044293            7 RETINNCVSRSQSDS-YEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DL   84 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~   84 (236)
                      .+.|+.|+++|++++ ++++..|+++|.+++..+++++..+.+. |++|.|+.+|.++++.+++.|+++|.+++.+. .+
T Consensus       116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~  194 (528)
T 4b8j_A          116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDH-GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC  194 (528)
T ss_dssp             TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhC-CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh
Confidence            368999999999876 9999999999999999888999999998 99999999999999999999999999999875 46


Q ss_pred             hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293           85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF  164 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~  164 (236)
                      +..+.+.|++++|+.+|..+.+..++..|+++|.+|+............|+++.|+.+|.+.++.++..++++|.+++..
T Consensus       195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~  274 (528)
T 4b8j_A          195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG  274 (528)
T ss_dssp             HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence            88888999999999999543389999999999999998864444445589999999999999999999999999999987


Q ss_pred             CCCh-HHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCC
Q 044293          165 HGNS-TLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGR  230 (236)
Q Consensus       165 ~~~~-~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~  230 (236)
                      ...+ ..+++.|++|.|+.+|.+++ +.++..|+.+|.+++. +++.+..+.+.|+ ++.|+.+|+++
T Consensus       275 ~~~~~~~~~~~g~v~~Lv~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~-l~~L~~lL~~~  340 (528)
T 4b8j_A          275 TNDKIQAVIEAGVCPRLVELLLHPS-PSVLIPALRTVGNIVTGDDAQTQCIIDHQA-LPCLLSLLTQN  340 (528)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHTTTH-HHHHHHHHHSC
T ss_pred             CHHHHHHHHHcCHHHHHHHHHcCCC-hhHHHHHHHHHHHHHcCCHHHHHHHHHhhh-HHHHHHHHcCC
Confidence            6554 56778999999999999885 7899999999999997 5677888888875 89999999876

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.93  E-value=2.6e-25  Score=196.75  Aligned_cols=223  Identities=14%  Similarity=0.108  Sum_probs=199.1

Q ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhhCCCCch
Q 044293            6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNLSLNPDL   84 (236)
Q Consensus         6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~   84 (236)
                      ..+.|+.|+.+|+++++.++..|+..|.+++.+ +.++..+...+|+++.|+.+|.++ +++++..++.+|.+++.++++
T Consensus        15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~   93 (529)
T 1jdh_A           15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG   93 (529)
T ss_dssp             --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh
Confidence            367899999999999999999999999999987 456766665448999999999754 889999999999999999999


Q ss_pred             hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293           85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~  163 (236)
                      +..+.+.|+++.|+.+|+++ +++++..|+++|.+++.++ ..+..+.+.|++|.|++++.+++..++..++.+|.+++.
T Consensus        94 ~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~  172 (529)
T 1jdh_A           94 LLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY  172 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999998 8999999999999999874 567777789999999999999998999999999999998


Q ss_pred             C-CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293          164 F-HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRS  231 (236)
Q Consensus       164 ~-~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~~~  231 (236)
                      . ++++..+.+.|+++.+++++++++.....+.++.+|.+++.+++++..+.+.|+ ++.|++++++++
T Consensus       173 ~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~-~~~L~~ll~~~~  240 (529)
T 1jdh_A          173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPS  240 (529)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTH-HHHHHTTTTSSC
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCC-HHHHHHHHhCCC
Confidence            4 678888999999999999998876567788999999999999999999999986 899999987764

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.93  E-value=1.2e-24  Score=193.55  Aligned_cols=222  Identities=12%  Similarity=0.126  Sum_probs=193.2

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc-
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD-   83 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-   83 (236)
                      .+.+.+|.|+.+|.+++++++..|+++|.+++..+++....+.+. |++|.|+.+|.++++.++..++.+|.|++.+++ 
T Consensus       248 ~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~-g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~  326 (529)
T 3tpo_A          248 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK-GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE  326 (529)
T ss_dssp             HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTT-TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhc-cchHHHHHHhcCCChhHHHHHHHHHHHHHccchH
Confidence            347789999999999999999999999999999888888888888 999999999999999999999999999988765 


Q ss_pred             hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293           84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV  162 (236)
Q Consensus        84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~  162 (236)
                      .+..+.+.|+++.|+.+|+++ ++++++.|+|+|.|++... +.+..+.+.|++|.|+.++.+++..++..|+++|.|++
T Consensus       327 ~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~  405 (529)
T 3tpo_A          327 QTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYT  405 (529)
T ss_dssp             HHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            577888999999999999998 8999999999999998755 55677778999999999999999999999999999999


Q ss_pred             cC--CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC-------hhhHHHHHhcCCcHHHHHHHhhCC
Q 044293          163 QF--HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF-------DEGMIALTKTDQIVSLMVDVLKGR  230 (236)
Q Consensus       163 ~~--~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~-------~~~~~~i~~~g~~i~~lv~~l~~~  230 (236)
                      .+  ++.+..+++.|++++|+++|...+ +++...++.+|.|+...       +..+..|.++|| +..+-.+..+.
T Consensus       406 ~~~~~~~~~~l~~~g~i~~L~~LL~~~d-~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~gg-l~~ie~Lq~~~  480 (529)
T 3tpo_A          406 SGGTVEQIVYLVHCGIIEPLMNLLSAKD-TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGG-LDKIEALQRHE  480 (529)
T ss_dssp             HHSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-HHHHTGGGGCS
T ss_pred             cCCCHHHHHHHHHCcCHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCc-HHHHHHHHcCC
Confidence            74  456778999999999999999885 78889999999998631       233556778888 67765554443

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.93  E-value=1.4e-24  Score=192.68  Aligned_cols=222  Identities=14%  Similarity=0.124  Sum_probs=193.1

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh-HHHHHHHhccCcHHHHHhhccCCC-hHHHHHHHHHHHhhCCC-Cc
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSP-QYRSLLAQTDGAISTLLGLSKSSS-PIIRTLSLSILLNLSLN-PD   83 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~-~~   83 (236)
                      ...|+.+++.|++++++.+..|++.|++++.... .....+.+. |++|.|+.+|.+++ +.++..|+++|.+++.+ ++
T Consensus        73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~-g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~  151 (528)
T 4b8j_A           73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE  151 (528)
T ss_dssp             --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHT-TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHC-CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            4569999999999999999999999999976543 567778887 99999999999876 89999999999999997 56


Q ss_pred             hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhh-cCCCcHHHHHHHHHHHHH
Q 044293           84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAV-SAPSNPAGHHLLSSLAEL  161 (236)
Q Consensus        84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~L  161 (236)
                      ++..+++.|++++|+.+|+++ +++++..|+++|.+++.+. .++..+.+.|++++|+.+| .+.++.++..++++|.+|
T Consensus       152 ~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L  230 (528)
T 4b8j_A          152 NTKVVIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF  230 (528)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            788888999999999999998 8999999999999999764 5688888899999999999 566788999999999999


Q ss_pred             hcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhh-HHHHHhcCCcHHHHHHHhhCCcc
Q 044293          162 VQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEG-MIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       162 ~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                      |............|++|.|+.++.+.+ +.++..|+.+|.+++..++. ...+...|+ ++.|+.+|++.++
T Consensus       231 ~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~-v~~Lv~lL~~~~~  300 (528)
T 4b8j_A          231 CRGKPQPSFEQTRPALPALARLIHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGV-CPRLVELLLHPSP  300 (528)
T ss_dssp             HCSSSCCCHHHHTTHHHHHHHHTTCCC-HHHHHHHHHHHHHHTSSCHHHHHHHHHTTC-HHHHHHHTTCSCH
T ss_pred             HcCCCCCcHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCH-HHHHHHHHcCCCh
Confidence            998666556667999999999998875 78999999999999987654 466777776 8999999987653

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.93  E-value=4.3e-25  Score=173.25  Aligned_cols=180  Identities=16%  Similarity=0.168  Sum_probs=162.9

Q ss_pred             CcHHHHHhhccCCChHHHHHHHHHHHhhCCC-CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc-cchhhh
Q 044293           51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM-LDKNKA  128 (236)
Q Consensus        51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~-~~~~~~  128 (236)
                      |+.+.|+.+|++++++++..|+++|.+++.. ++++..+.+.|+++.|+.+|+++ +++++..|+++|.+++. +++++.
T Consensus        12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHH
Confidence            8999999999999999999999999999955 56688899999999999999998 89999999999999995 567888


Q ss_pred             hhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC-CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC-
Q 044293          129 RFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF-  206 (236)
Q Consensus       129 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~-  206 (236)
                      .+.+.|+++.|+++|.++++.++..|+++|.+++.+. +.+..+++.|++|.|++++.+++ ..+++.|+.+|.+++.+ 
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~  169 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGG  169 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSC
T ss_pred             HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCC
Confidence            8999999999999999999999999999999999754 55677889999999999999874 78999999999999986 


Q ss_pred             hhhHHHHHhcCCcHHHHHHHhhCCccc
Q 044293          207 DEGMIALTKTDQIVSLMVDVLKGRSMF  233 (236)
Q Consensus       207 ~~~~~~i~~~g~~i~~lv~~l~~~~~~  233 (236)
                      ++.+..+.+.|+ ++.|+++++++++.
T Consensus       170 ~~~~~~~~~~g~-i~~L~~ll~~~~~~  195 (210)
T 4db6_A          170 NEQKQAVKEAGA-LEKLEQLQSHENEK  195 (210)
T ss_dssp             HHHHHHHHHTTH-HHHHHHGGGCSCHH
T ss_pred             cHHHHHHHHCCC-HHHHHHHHhCCCHH
Confidence            889999999986 89999999987654

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.93  E-value=1.6e-24  Score=197.04  Aligned_cols=222  Identities=14%  Similarity=0.113  Sum_probs=199.4

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhhCCCCchh
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNLSLNPDLK   85 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~   85 (236)
                      .+.|+.|+.+|+++++.++..|+.+|.+++.+++ ++..+...+|+++.|+.+|.++ +++++..|+.+|.+++.+++++
T Consensus        13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~   91 (644)
T 2z6h_A           13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   91 (644)
T ss_dssp             TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence            5679999999999999999999999999999854 6666654348999999999865 8899999999999999999999


Q ss_pred             HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-
Q 044293           86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ-  163 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-  163 (236)
                      ..+.+.|+++.|+.+|+++ +++++..|+++|.+++... ..+..+.+.|+++.|+++|.++++.++..++.+|.+++. 
T Consensus        92 ~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~  170 (644)
T 2z6h_A           92 LAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  170 (644)
T ss_dssp             HHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999998 8999999999999999875 566777789999999999999998888888999999997 


Q ss_pred             CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293          164 FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRS  231 (236)
Q Consensus       164 ~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~~~  231 (236)
                      .++++..+.+.|+++.|+.++.+.+....++.++.+|.+++.++++|..+++.|+ ++.|+++++.++
T Consensus       171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~-l~~L~~ll~~~~  237 (644)
T 2z6h_A          171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPS  237 (644)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTH-HHHHHTTTTCSC
T ss_pred             CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCC-HHHHHHHHhcCC
Confidence            6788999999999999999998876567889999999999999999999999986 899999887654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.92  E-value=3.7e-24  Score=189.31  Aligned_cols=223  Identities=17%  Similarity=0.164  Sum_probs=196.8

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC--CChHHHHHHHHHHHhhCCCC-c
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS--SSPIIRTLSLSILLNLSLNP-D   83 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~-~   83 (236)
                      .+.++.|++++++++++++..|+++|.+++..+++++..+.+. |+++.|+.+|.+  .++++++.++.+|.|++.++ +
T Consensus       265 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~  343 (529)
T 1jdh_A          265 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE  343 (529)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCch
Confidence            5789999999999999999999999999999888899999998 999999999975  34799999999999998863 3


Q ss_pred             ---hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHH--------
Q 044293           84 ---LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGH--------  152 (236)
Q Consensus        84 ---~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~--------  152 (236)
                         .+..+.+.|+++.|+++|+++.+.+++..++++|.|++..+.++..+.+.|++|.|+.++.++++.+++        
T Consensus       344 ~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n  423 (529)
T 1jdh_A          344 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ  423 (529)
T ss_dssp             HHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCc
Confidence               366788999999999999987447999999999999999998888888999999999999875544443        


Q ss_pred             --------------HHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCC
Q 044293          153 --------------HLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQ  218 (236)
Q Consensus       153 --------------~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~  218 (236)
                                    .++.+|.+|+.+++++..+.+.|+++.++.++.+++ +.++..+..+|.+++.+++.+..+.+.||
T Consensus       424 ~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~-~~v~~~a~~~l~~l~~~~~~~~~i~~~~~  502 (529)
T 1jdh_A          424 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDKEAAEAIEAEGA  502 (529)
T ss_dssp             --CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSHHHHHHHHHTTC
T ss_pred             hhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCc-hHHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence                          566677778888888889999999999999999885 78999999999999999999999999998


Q ss_pred             cHHHHHHHhhCCcc
Q 044293          219 IVSLMVDVLKGRSM  232 (236)
Q Consensus       219 ~i~~lv~~l~~~~~  232 (236)
                       ++.|.+++++.++
T Consensus       503 -~~~L~~l~~~~~~  515 (529)
T 1jdh_A          503 -TAPLTELLHSRNE  515 (529)
T ss_dssp             -HHHHHHGGGCSSH
T ss_pred             -hHHHHHHhcCCCH
Confidence             8999999987764

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.92  E-value=7.5e-24  Score=188.27  Aligned_cols=221  Identities=10%  Similarity=0.066  Sum_probs=196.5

Q ss_pred             HhHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-ch
Q 044293            7 RETINNCVSRSQSD-SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DL   84 (236)
Q Consensus         7 ~~~i~~lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~   84 (236)
                      .+.++.|+++|+++ ++.++..|+++|.+++..+++.+..+.+. |+++.|+.+|.++++++++.|+++|.+++.+. .+
T Consensus       129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~-g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~  207 (530)
T 1wa5_B          129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA-DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY  207 (530)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence            36899999999987 89999999999999999888888999987 99999999999999999999999999999885 56


Q ss_pred             hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293           85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~  163 (236)
                      +..+...|++++|+.++++. +.+++..|+++|.+|+... .........|+++.|+.+|.++++.++..++++|.+|+.
T Consensus       208 ~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~  286 (530)
T 1wa5_B          208 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD  286 (530)
T ss_dssp             HHHHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHcCcHHHHHHHhccC-CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            88888999999999999987 8999999999999999876 444455558999999999999999999999999999998


Q ss_pred             CC-CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC-hhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293          164 FH-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF-DEGMIALTKTDQIVSLMVDVLKGRS  231 (236)
Q Consensus       164 ~~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~~i~~lv~~l~~~~  231 (236)
                      .. +.+..+++.|++|.|+.+|.+.+ ..++..|+.+|.+++.. ++....+...|+ ++.|+.+|++++
T Consensus       287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~L~~lL~~~~  354 (530)
T 1wa5_B          287 GPQEAIQAVIDVRIPKRLVELLSHES-TLVQTPALRAVGNIVTGNDLQTQVVINAGV-LPALRLLLSSPK  354 (530)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHHHTTCSC
T ss_pred             CCHHHHHHHHhcCcHHHHHHHHCCCC-hhhHHHHHHHHHHHHcCCHHHHHHHHHcch-HHHHHHHHcCCC
Confidence            64 45677788999999999999874 78999999999999964 677777888875 899999998764

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.92  E-value=2.7e-23  Score=184.68  Aligned_cols=223  Identities=13%  Similarity=0.121  Sum_probs=194.4

Q ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhhCCCC-
Q 044293            6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNLSLNP-   82 (236)
Q Consensus         6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~-   82 (236)
                      ..+.++.+++.|++++++++..|+..|+++.... ...+..+.+. |++|.|+.+|.++ ++.++..|+++|.+++.+. 
T Consensus        85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~-g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~  163 (530)
T 1wa5_B           85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQA-GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS  163 (530)
T ss_dssp             --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHT-TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHC-CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence            4567999999999999999999999999986542 3455677887 9999999999987 8999999999999999975 


Q ss_pred             chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293           83 DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL  161 (236)
Q Consensus        83 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L  161 (236)
                      +.+..+++.|+++.|+.+|+++ +++++..|+++|.+++.+. .++..+...|+++.|+.++.+.++.++..++++|.+|
T Consensus       164 ~~~~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L  242 (530)
T 1wa5_B          164 AQTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL  242 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            5678888999999999999988 8999999999999999874 6788888899999999999998889999999999999


Q ss_pred             hcCC-CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC-hhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293          162 VQFH-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF-DEGMIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       162 ~~~~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                      +.+. .........|++|.|+.++.+.+ +.++..++.+|.+|+.. ++.+..+...|+ ++.|+.++++.++
T Consensus       243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~-v~~Lv~lL~~~~~  313 (530)
T 1wa5_B          243 CRGKKPQPDWSVVSQALPTLAKLIYSMD-TETLVDACWAISYLSDGPQEAIQAVIDVRI-PKRLVELLSHEST  313 (530)
T ss_dssp             HCCSSSCCCHHHHGGGHHHHHHHTTCCC-HHHHHHHHHHHHHHHSSCHHHHHHHHHTTC-HHHHHHGGGCSCH
T ss_pred             hCCCCCCCcHHHHHhHHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCHHHHHHHHhcCc-HHHHHHHHCCCCh
Confidence            9876 56666677899999999999875 78999999999999965 577888888886 8999999987553

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.92  E-value=1.1e-22  Score=176.35  Aligned_cols=221  Identities=11%  Similarity=0.067  Sum_probs=193.1

Q ss_pred             hHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-chh
Q 044293            8 ETINNCVSRSQSD-SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DLK   85 (236)
Q Consensus         8 ~~i~~lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~   85 (236)
                      +.++.|+++|+++ +++++..|+++|.+++..++++...+.+. |++|.|+.+|+++++++++.|+++|.+++.+. ..+
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~  142 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQA-GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR  142 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence            6899999999988 89999999999999999877888888887 99999999999999999999999999999986 468


Q ss_pred             HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc--hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293           86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD--KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~  163 (236)
                      ..+.+.|+++.|+.+++++.+.+++..|+++|.+++...  ..+..+. .+++|.|++++.++++.++..++++|.+++.
T Consensus       143 ~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~  221 (450)
T 2jdq_A          143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSD  221 (450)
T ss_dssp             HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHC
Confidence            888899999999999996337999999999999999764  3333333 7999999999999999999999999999998


Q ss_pred             CC-CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh-hhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293          164 FH-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD-EGMIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       164 ~~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                      .. +.+..+.+.|++|.++.+|.+.+ ..++..|+.+|.+++.+. +.+..+.+.|+ ++.++.++++.++
T Consensus       222 ~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~L~~ll~~~~~  290 (450)
T 2jdq_A          222 GPNDKIQAVIDAGVCRRLVELLMHND-YKVVSPALRAVGNIVTGDDIQTQVILNCSA-LQSLLHLLSSPKE  290 (450)
T ss_dssp             SSHHHHHHHHHTTTHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHTTTH-HHHHHHHTTCSSH
T ss_pred             CCcHHHHHHHHcCcHHHHHHHHCCCc-hhHHHHHHHHHHHHhhCChHHHHHHHHCcc-HHHHHHHHcCCCH
Confidence            64 56677788999999999998774 789999999999999764 55666777775 8999999987653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.92  E-value=2.7e-23  Score=188.89  Aligned_cols=223  Identities=17%  Similarity=0.157  Sum_probs=198.7

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC--ChHHHHHHHHHHHhhCCCCc-
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS--SPIIRTLSLSILLNLSLNPD-   83 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~-   83 (236)
                      .+.++.|+++|++++++++..|+++|.+++..++.+++.+.+. |+++.|+.+|.+.  .+.++..++.+|.+++.+.. 
T Consensus       262 ~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~-g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~  340 (644)
T 2z6h_A          262 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE  340 (644)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCch
Confidence            5789999999999999999999999999999888899999998 9999999999763  37999999999999987532 


Q ss_pred             ---hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCC-------------
Q 044293           84 ---LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPS-------------  147 (236)
Q Consensus        84 ---~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~-------------  147 (236)
                         .+..+.+.|+++.|+++|+++.+.++++.|+++|.|++..+.++..+.+.|+++.|+++|.+.+             
T Consensus       341 ~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n  420 (644)
T 2z6h_A          341 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ  420 (644)
T ss_dssp             HHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC-------
T ss_pred             HHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhcccc
Confidence               3555778999999999999874579999999999999999988988889999999999997632             


Q ss_pred             ---------cHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCC
Q 044293          148 ---------NPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQ  218 (236)
Q Consensus       148 ---------~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~  218 (236)
                               ..++..++.+|++|+.++.++..+.+.|++|.++++|.+.+ +.++..++.+|.+++.+++.+..+.+.||
T Consensus       421 ~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~i~~~g~  499 (644)
T 2z6h_A          421 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDKEAAEAIEAEGA  499 (644)
T ss_dssp             ---CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSHHHHHHHHHTTC
T ss_pred             chhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCHHHHHHHHHcCC
Confidence                     34667899999999999989999999999999999999875 78999999999999999999999999998


Q ss_pred             cHHHHHHHhhCCcc
Q 044293          219 IVSLMVDVLKGRSM  232 (236)
Q Consensus       219 ~i~~lv~~l~~~~~  232 (236)
                       ++.|.+++++.++
T Consensus       500 -l~~L~~ll~~~~~  512 (644)
T 2z6h_A          500 -TAPLTELLHSRNE  512 (644)
T ss_dssp             -HHHHHHHTTCSCH
T ss_pred             -hhHHHHHHcCCCH
Confidence             8999999987764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.91  E-value=9.2e-23  Score=176.78  Aligned_cols=221  Identities=14%  Similarity=0.154  Sum_probs=193.8

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCC--c
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNP--D   83 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~--~   83 (236)
                      .+.++.|+++|++++++++..|+++|.+++..++.++..+.+. |+++.|+.++.+ .++.++..++++|.+++.+.  .
T Consensus       106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~  184 (450)
T 2jdq_A          106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDC-NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPP  184 (450)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            4689999999999999999999999999999988899999987 999999999985 68899999999999999765  3


Q ss_pred             hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293           84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV  162 (236)
Q Consensus        84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~  162 (236)
                      .+..+. .++++.|+.+++++ +++++..++++|.+++... +++..+.+.|+++.|+++|.++++.++..|+++|.+++
T Consensus       185 ~~~~~~-~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  262 (450)
T 2jdq_A          185 PEFAKV-SPCLNVLSWLLFVS-DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIV  262 (450)
T ss_dssp             CCGGGT-GGGHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             CCHHHH-HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHh
Confidence            333443 88999999999988 8999999999999999864 55667777899999999999999999999999999999


Q ss_pred             cCCCC-hHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293          163 QFHGN-STLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       163 ~~~~~-~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                      ...+. ++.+.+.|++|.++.++.+++ +.++..|+.+|.+++. +++....+.+.|+ ++.++++++++++
T Consensus       263 ~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~L~~~l~~~~~  332 (450)
T 2jdq_A          263 TGDDIQTQVILNCSALQSLLHLLSSPK-ESIKKEACWTISNITAGNRAQIQTVIDANI-FPALISILQTAEF  332 (450)
T ss_dssp             TSCHHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHHHHHHSCH
T ss_pred             hCChHHHHHHHHCccHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-HHHHHHHHhcCCH
Confidence            87554 455778899999999999874 7899999999999996 6778888888875 8999999987654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.91  E-value=3.3e-23  Score=192.02  Aligned_cols=224  Identities=17%  Similarity=0.165  Sum_probs=198.5

Q ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CC-hHHHHHHHHHHHhhCCCC-
Q 044293            6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SS-PIIRTLSLSILLNLSLNP-   82 (236)
Q Consensus         6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~-~~~~~~a~~~L~~l~~~~-   82 (236)
                      ..+.|+.|+++|++++++++..|+++|.+++..++.++..+.+. |+++.|+.+|.+ .+ +.++..|+.+|.+|+... 
T Consensus       397 ~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~  475 (780)
T 2z6g_A          397 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ  475 (780)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC-CCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc
Confidence            35789999999999999999999999999999888899999998 999999999975 33 489999999999998754 


Q ss_pred             c---hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCC------------
Q 044293           83 D---LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPS------------  147 (236)
Q Consensus        83 ~---~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~------------  147 (236)
                      +   .+..+...|+++.|+.+|.++...++++.|+++|.|++..+.++..+.+.|+++.|+++|.+++            
T Consensus       476 ~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~  555 (780)
T 2z6g_A          476 DAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT  555 (780)
T ss_dssp             THHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             hHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccc
Confidence            3   2557778999999999999884469999999999999999888888888999999999997532            


Q ss_pred             ----------cHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcC
Q 044293          148 ----------NPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTD  217 (236)
Q Consensus       148 ----------~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g  217 (236)
                                .+++..++.+|++|+.++.++..+.+.|++|.|+.+|.+.+ +.++..|+.+|.+++.+++.+..+.+.|
T Consensus       556 nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~i~~~g  634 (780)
T 2z6g_A          556 QQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDKEAAEAIEAEG  634 (780)
T ss_dssp             --CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSC-HHHHHHHHHHHHHHHTSHHHHHHHHHTT
T ss_pred             cchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCHHHHHHHHHCC
Confidence                      24567899999999998888988999999999999999874 7899999999999999999999999999


Q ss_pred             CcHHHHHHHhhCCcc
Q 044293          218 QIVSLMVDVLKGRSM  232 (236)
Q Consensus       218 ~~i~~lv~~l~~~~~  232 (236)
                      | ++.|++++++.++
T Consensus       635 ~-i~~L~~Ll~~~~~  648 (780)
T 2z6g_A          635 A-TAPLTELLHSRNE  648 (780)
T ss_dssp             C-HHHHHHGGGCSCH
T ss_pred             C-HHHHHHHHcCCCH
Confidence            8 8999999987664

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.91  E-value=2.3e-23  Score=193.15  Aligned_cols=222  Identities=14%  Similarity=0.107  Sum_probs=198.6

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhhCCCCchh
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNLSLNPDLK   85 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~   85 (236)
                      .+.|+.|+.+|+++++.+|..|+.+|.+++.+ ..++..+...+|+++.|+.+|+++ +++++..|+.+|.+++.+++++
T Consensus       149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~  227 (780)
T 2z6g_A          149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL  227 (780)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred             hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence            67899999999999999999999999999987 456777765448999999999755 8899999999999999999999


Q ss_pred             HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-
Q 044293           86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ-  163 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-  163 (236)
                      ..+.+.|+|+.|+.+|+++ ++.++..|+++|.+|+... ..+..+.+.|+++.|+++|.+++..++..++.+|.+++. 
T Consensus       228 ~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~  306 (780)
T 2z6g_A          228 LAIFKSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  306 (780)
T ss_dssp             HHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence            9999999999999999998 8999999999999999875 556667679999999999999988899999999999997 


Q ss_pred             CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293          164 FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRS  231 (236)
Q Consensus       164 ~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~~~  231 (236)
                      +++++..+++.|+++.|+.++++++.....+.++.+|.+|+.+++++..+++.|+ ++.|+.++++++
T Consensus       307 ~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~-l~~Ll~lL~~~~  373 (780)
T 2z6g_A          307 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPS  373 (780)
T ss_dssp             CHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTH-HHHHGGGTTCSC
T ss_pred             ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhch-HHHHHHHHcCCc
Confidence            4678888999999999999999876566778999999999999999999999986 899999887654

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.89  E-value=7.7e-22  Score=162.99  Aligned_cols=199  Identities=17%  Similarity=0.134  Sum_probs=161.7

Q ss_pred             HhHHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCC-c
Q 044293            7 RETINNCVS-RSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNP-D   83 (236)
Q Consensus         7 ~~~i~~lv~-~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~-~   83 (236)
                      .+.++.|+. +|++++++++..|+++|.+++.+++..++.+.+. |++|.|+.+|++ +++.++++|+++|.+++.+. .
T Consensus        80 ~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~-g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~  158 (296)
T 1xqr_A           80 LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL-GALRKLLRLLDRDACDTVRVKALFAISCLVREQEA  158 (296)
T ss_dssp             TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             cCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC-CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcH
Confidence            468999999 9999999999999999999999999999999998 999999999986 47899999999999998765 4


Q ss_pred             hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhccc-chhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293           84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAML-DKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV  162 (236)
Q Consensus        84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~  162 (236)
                      ....+.+.|++++|+.+|+++ +..++..|+|+|.+++.. ++.+..+.+.|++++|+.+|.++++.+++.++++|.++.
T Consensus       159 ~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~  237 (296)
T 1xqr_A          159 GLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV  237 (296)
T ss_dssp             HHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence            577888899999999999998 899999999999999875 567888889999999999999999999999999999999


Q ss_pred             cCCCChHHHHHhC--cHHH----HHHHhcCCC-hhhHHHHHHHHHHHHcCCh
Q 044293          163 QFHGNSTLAVRAG--AVSE----LIHLIGSTE-AEDLAGTSLAVLNLLARFD  207 (236)
Q Consensus       163 ~~~~~~~~~~~~g--~i~~----lv~ll~~~~-~~~~~~~a~~~L~~l~~~~  207 (236)
                      .........+..+  .+..    -++-++..+ ..++.+.|..++.+....+
T Consensus       238 ~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~~  289 (296)
T 1xqr_A          238 TDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSP  289 (296)
T ss_dssp             TTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC--
T ss_pred             hCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCCC
Confidence            8732211111211  1222    223333222 3567778888887776543

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.85  E-value=7e-21  Score=172.52  Aligned_cols=224  Identities=12%  Similarity=0.091  Sum_probs=183.4

Q ss_pred             HhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCh-------------------------------------H-HHHHHH
Q 044293            7 RETINNCVSRSQS-DSYEDQQKALQTLASITRVSP-------------------------------------Q-YRSLLA   47 (236)
Q Consensus         7 ~~~i~~lv~~L~~-~~~~~~~~a~~~L~~l~~~~~-------------------------------------~-~~~~i~   47 (236)
                      ++.++.|++++++ ++.+..-.++..|.|++...+                                     + ++..+.
T Consensus       375 ~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~  454 (778)
T 3opb_A          375 ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYIL  454 (778)
T ss_dssp             HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHH
Confidence            5679999999985 677788889999999987422                                     1 567888


Q ss_pred             hccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHH---HHHHHHHHHHHhcccc
Q 044293           48 QTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQE---TVKLASSLICSLAMLD  124 (236)
Q Consensus        48 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~---~~~~a~~~L~~Ls~~~  124 (236)
                      ++ |+||.|+.+++++++.+++.++++|.|++.++++|..+++.|++++|+.+|.++ ...   .+..|+.+|.+++...
T Consensus       455 ea-GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~-~~~~~~~k~~AA~ALArLlis~  532 (778)
T 3opb_A          455 RT-ELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANK-QDIGEPIRILGCRALTRMLIFT  532 (778)
T ss_dssp             TT-THHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC----CCHHHHHHHHHHHHHHHTS
T ss_pred             HC-cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CCcchHHHHHHHHHHHHHHhcC
Confidence            88 999999999999999999999999999999999999999999999999999987 333   7999999999999776


Q ss_pred             hhhhhhcc---cCcHHHHHHhhcC-CCc-------------HHHHHHHHHHHHHhcCCC-----ChHHHHH-hCcHHHHH
Q 044293          125 KNKARFGV---AGTVQVLVKAVSA-PSN-------------PAGHHLLSSLAELVQFHG-----NSTLAVR-AGAVSELI  181 (236)
Q Consensus       125 ~~~~~i~~---~g~i~~Lv~lL~~-~~~-------------~~~~~a~~aL~~L~~~~~-----~~~~~~~-~g~i~~lv  181 (236)
                      ++...+..   .|+|++|+.+|.. +..             ..+..|+.||.||+..++     .|..+++ .|++|.+.
T Consensus       533 np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~  612 (778)
T 3opb_A          533 NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE  612 (778)
T ss_dssp             CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred             CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence            66655532   4999999999983 211             126799999999999874     3777888 49999999


Q ss_pred             HHhcCCChhhHHHHHHHHHHHHcCChhhH-HHHHhcCC-----cHHHHHHHhhCCccc
Q 044293          182 HLIGSTEAEDLAGTSLAVLNLLARFDEGM-IALTKTDQ-----IVSLMVDVLKGRSMF  233 (236)
Q Consensus       182 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~-~~i~~~g~-----~i~~lv~~l~~~~~~  233 (236)
                      .+|.+. +..++..|+.+++||+.+++++ ..+...+.     -++.|+.++..++..
T Consensus       613 ~LL~s~-n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~  669 (778)
T 3opb_A          613 NLMLDE-NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVE  669 (778)
T ss_dssp             HGGGCS-SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHH
T ss_pred             HHHhCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHH
Confidence            999886 4789999999999999999986 46654331     157899988776543

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.84  E-value=6.8e-20  Score=166.10  Aligned_cols=224  Identities=14%  Similarity=0.135  Sum_probs=184.7

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCCc
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNPD   83 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~   83 (236)
                      .+.+..+.++++|.+++.+.+..|++.|..++.+ ++.|+.+++..|.++.|+.++.+ .+..+.-.++.++.||+..++
T Consensus       331 si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~  409 (778)
T 3opb_A          331 NLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPE  409 (778)
T ss_dssp             CHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCC
T ss_pred             cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCc
Confidence            3456788899999888877899999999999987 67899999987779999999985 677888999999999987433


Q ss_pred             ---------------------------------------hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc
Q 044293           84 ---------------------------------------LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD  124 (236)
Q Consensus        84 ---------------------------------------~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~  124 (236)
                                                             ++..+.+.|++|+|+.+++++ ++.+++.|+++|.+++.++
T Consensus       410 ~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~-s~~~re~A~~aL~nLS~d~  488 (778)
T 3opb_A          410 EXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNL-SPNCKQQVVRIIYNITRSK  488 (778)
T ss_dssp             CCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGS-CHHHHHHHHHHHHHHHTSG
T ss_pred             ccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCH
Confidence                                                   345667899999999999998 8999999999999999999


Q ss_pred             hhhhhhcccCcHHHHHHhhcCCCcH---HHHHHHHHHHHHhcCCCChHHHHH---hCcHHHHHHHhcC-CChh-------
Q 044293          125 KNKARFGVAGTVQVLVKAVSAPSNP---AGHHLLSSLAELVQFHGNSTLAVR---AGAVSELIHLIGS-TEAE-------  190 (236)
Q Consensus       125 ~~~~~i~~~g~i~~Lv~lL~~~~~~---~~~~a~~aL~~L~~~~~~~~~~~~---~g~i~~lv~ll~~-~~~~-------  190 (236)
                      ++|..+.+.|++++|+.++.+++..   .+..|+.+|.+++.+.+....+-.   .|++|+|++||.. ....       
T Consensus       489 ~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~  568 (778)
T 3opb_A          489 NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND  568 (778)
T ss_dssp             GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---C
T ss_pred             HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccc
Confidence            9999999999999999999987644   789999999999976654443311   4999999999983 2111       


Q ss_pred             ----hH-HHHHHHHHHHHcCCh-----hhHHHHHhc-CCcHHHHHHHhhCCc
Q 044293          191 ----DL-AGTSLAVLNLLARFD-----EGMIALTKT-DQIVSLMVDVLKGRS  231 (236)
Q Consensus       191 ----~~-~~~a~~~L~~l~~~~-----~~~~~i~~~-g~~i~~lv~~l~~~~  231 (236)
                          .+ ...|+.+|.||+..+     +.|..++++ |+ ++.+.+++.+.+
T Consensus       569 ~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga-~~~L~~LL~s~n  619 (778)
T 3opb_A          569 EQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY-WSTIENLMLDEN  619 (778)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH-HHHHHHGGGCSS
T ss_pred             ccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH-HHHHHHHHhCCC
Confidence                12 468999999999876     458888886 76 899999887654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.62  E-value=6.4e-14  Score=124.43  Aligned_cols=210  Identities=15%  Similarity=0.142  Sum_probs=174.2

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChH-HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQ-YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK   85 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~   85 (236)
                      ++.|+.|+++|++++-.+|.+++..|..++..+++ ++++|...+++|+.|+.+|+.....+|..++.+|.+++.+..+.
T Consensus       121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~i  200 (651)
T 3grl_A          121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAI  200 (651)
T ss_dssp             THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHH
Confidence            57899999999999999999999999999988877 89999988899999999999989999999999999999998875


Q ss_pred             HHhh-hcccHHHHHHHHhccC---CHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCc------HHHHH-
Q 044293           86 QSLA-SMETIYRLNWIIQSSS---SQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSN------PAGHH-  153 (236)
Q Consensus        86 ~~i~-~~g~i~~L~~lL~~~~---~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~------~~~~~-  153 (236)
                      +.++ -.|+.++|+++++...   --.+...|+.+|.+|.... .|+..+.+.|+++.|..++..+..      ....+ 
T Consensus       201 QklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~  280 (651)
T 3grl_A          201 QKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNL  280 (651)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHH
Confidence            5555 6799999999998642   2368889999999998876 688889999999999999975432      23344 


Q ss_pred             --HHHHHHHHhcCC-------CChHHHHHhCcHHHHHHHhcCCC-hhhHHHHHHHHHHHHcC-ChhhHHHHHhc
Q 044293          154 --LLSSLAELVQFH-------GNSTLAVRAGAVSELIHLIGSTE-AEDLAGTSLAVLNLLAR-FDEGMIALTKT  216 (236)
Q Consensus       154 --a~~aL~~L~~~~-------~~~~~~~~~g~i~~lv~ll~~~~-~~~~~~~a~~~L~~l~~-~~~~~~~i~~~  216 (236)
                        ++.++.-|+...       .|++.+.+.|+++.+++++.... ...++..|+.++..+.+ ++.+++.|.+.
T Consensus       281 ~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~  354 (651)
T 3grl_A          281 HLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASV  354 (651)
T ss_dssp             HHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhc
Confidence              556666666542       35678899999999999997642 35688899999998875 67899998764

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.61  E-value=2.3e-14  Score=127.28  Aligned_cols=219  Identities=16%  Similarity=0.154  Sum_probs=178.6

Q ss_pred             HHHhHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCC--ChHHHHHHHHHHHhhCC-
Q 044293            5 RVRETINNCVSRSQSD-SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSS--SPIIRTLSLSILLNLSL-   80 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~-   80 (236)
                      ...++|+.|.+++++. -.+.|+.|+..|+.++++   .+..++.  ++++.|+..|+.+  |.++.+.++.+|.++-. 
T Consensus        18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg~--~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~   92 (651)
T 3grl_A           18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVGI--QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN   92 (651)
T ss_dssp             CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHHH--HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred             ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhhh--hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence            4578999999999754 478899999999999875   5666775  5799999999764  77888889999987533 


Q ss_pred             CCch-----------------hHHhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc--hhhhhhcc-cCcHHHH
Q 044293           81 NPDL-----------------KQSLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD--KNKARFGV-AGTVQVL  139 (236)
Q Consensus        81 ~~~~-----------------~~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~-~g~i~~L  139 (236)
                      +++.                 .+.+. +.+.|+.|+.+|++. +..++.++...|..|+...  .++..|.. .++++.|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~-df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~L  171 (651)
T 3grl_A           93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF-DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRL  171 (651)
T ss_dssp             C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHH
T ss_pred             CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc-cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHH
Confidence            3221                 11333 678999999999988 8999999999999998765  35677774 7999999


Q ss_pred             HHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHH-hCcHHHHHHHhcCCC---hhhHHHHHHHHHHHHcC-ChhhHHHHH
Q 044293          140 VKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVR-AGAVSELIHLIGSTE---AEDLAGTSLAVLNLLAR-FDEGMIALT  214 (236)
Q Consensus       140 v~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~-~g~i~~lv~ll~~~~---~~~~~~~a~~~L~~l~~-~~~~~~~i~  214 (236)
                      +.+|.+.+..++..++..|.+|+.+..+.+.++. .|+++.|++++....   ...+.+.|+.+|.||.. ++.++.-|+
T Consensus       172 v~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr  251 (651)
T 3grl_A          172 MDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK  251 (651)
T ss_dssp             HGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999989999999999999998877666655 699999999997632   23577999999999986 668999999


Q ss_pred             hcCCcHHHHHHHhhCC
Q 044293          215 KTDQIVSLMVDVLKGR  230 (236)
Q Consensus       215 ~~g~~i~~lv~~l~~~  230 (236)
                      +.|+ ++.|..+++.+
T Consensus       252 Et~~-i~~L~~LL~~~  266 (651)
T 3grl_A          252 EGSY-IQRMKPWFEVG  266 (651)
T ss_dssp             HTTC-GGGGGGGGCCC
T ss_pred             HcCC-HHHHHHHhCCC
Confidence            9987 89999988643

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.43  E-value=3.1e-11  Score=94.16  Aligned_cols=155  Identities=17%  Similarity=0.142  Sum_probs=130.0

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      ++.++.|+..|+++++.++..|+..|..+..           . +.++.|+.+|.++++.++..++.+|..+..      
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~-~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------E-RAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------G-GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------c-cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            5689999999999999999999999887642           2 679999999999999999999999988752      


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG  166 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~  166 (236)
                          .+.++.|+..|++. ++.++..|+.+|..+..          .+.++.|+.++.++++.++..++.+|..+..   
T Consensus        80 ----~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred             ----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence                46788999999888 89999999999988753          4578999999988898999999999988853   


Q ss_pred             ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293          167 NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       167 ~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~  205 (236)
                             ...++.|+.++.+.+ +.++..|+.+|..+..
T Consensus       142 -------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~  172 (211)
T 3ltm_A          142 -------ERAVEPLIKALKDED-GWVRQSAADALGEIGG  172 (211)
T ss_dssp             -------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCS
T ss_pred             -------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc
Confidence                   357888999997764 7788889988888753

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.40  E-value=5.7e-11  Score=91.89  Aligned_cols=154  Identities=17%  Similarity=0.145  Sum_probs=132.1

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      .+..+.+++.|+++++.++..|+..|..+..           . +.++.|+.+|.++++.++..++.+|..+..      
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~-~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------   74 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------E-RAVEPLIKALKDEDAWVRRAAADALGQIGD------   74 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------G-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------h-hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            6788999999999999999999999987642           2 579999999999999999999999987642      


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG  166 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~  166 (236)
                          ...++.|+..|++. ++.++..|+.+|..+..          ...++.|+.++.++++.++..++++|..+..   
T Consensus        75 ----~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           75 ----ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             ----GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred             ----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence                36789999999988 89999999999988643          4578999999999999999999999988853   


Q ss_pred             ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          167 NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       167 ~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                             .+.++.|+.++.+.+ +.++..|+.+|..+.
T Consensus       137 -------~~~~~~L~~~l~d~~-~~vr~~A~~aL~~~~  166 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDED-GWVRQSAADALGEIG  166 (201)
T ss_dssp             -------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHC
T ss_pred             -------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhC
Confidence                   467899999998874 788999999999883

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.34  E-value=1e-10  Score=91.19  Aligned_cols=158  Identities=12%  Similarity=0.077  Sum_probs=131.2

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS   87 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~   87 (236)
                      +.++.|+..|+++++.++..++++|..+..           . +.++.|+.+|.++++.++..++.+|..+..       
T Consensus        50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~-~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------  110 (211)
T 3ltm_A           50 RAVEPLIKALKDEDAWVRRAAADALGQIGD-----------E-RAVEPLIKALKDEDGWVRQSAAVALGQIGD-------  110 (211)
T ss_dssp             GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------G-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------H-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------
Confidence            678999999999999999999999988742           2 679999999999999999999999998753       


Q ss_pred             hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCC
Q 044293           88 LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGN  167 (236)
Q Consensus        88 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~  167 (236)
                         .+.++.|+.++++. ++.++..|+.+|.++..          ...++.|..++.++++.++..++.+|..+..    
T Consensus       111 ---~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  172 (211)
T 3ltm_A          111 ---ERAVEPLIKALKDE-DWFVRIAAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----  172 (211)
T ss_dssp             ---GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----
T ss_pred             ---HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----
Confidence               46889999999888 89999999999998743          3578999999999999999999999998853    


Q ss_pred             hHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhh
Q 044293          168 STLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEG  209 (236)
Q Consensus       168 ~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~  209 (236)
                            ..+++.|..++++.+ +.++..|..+|.++...+.+
T Consensus       173 ------~~~~~~L~~~l~d~~-~~vr~~A~~aL~~~~~~~~~  207 (211)
T 3ltm_A          173 ------ERVRAAMEKLAETGT-GFARKVAVNYLETHKSFNHH  207 (211)
T ss_dssp             ------HHHHHHHHHHHHHCC-HHHHHHHHHHHHC-------
T ss_pred             ------hhHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCCCC
Confidence                  457788999998874 78999999999988766543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.27  E-value=3.5e-10  Score=87.41  Aligned_cols=153  Identities=12%  Similarity=0.062  Sum_probs=130.8

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS   87 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~   87 (236)
                      +.++.|++.|+++++.++..|+++|..+..           . +.++.|+.+|.++++.++..++.+|..+..       
T Consensus        45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-----------~-~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------  105 (201)
T 3ltj_A           45 RAVEPLIKALKDEDAWVRRAAADALGQIGD-----------E-RAVEPLIKALKDEDGWVRQSAAVALGQIGD-------  105 (201)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------G-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------H-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------
Confidence            678999999999999999999999987642           2 578999999999999999999999998643       


Q ss_pred             hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCC
Q 044293           88 LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGN  167 (236)
Q Consensus        88 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~  167 (236)
                         ...++.|+.++++. ++.++..|+.+|..+..          .+.++.|+.++.++++.++..|+.+|..+..    
T Consensus       106 ---~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----  167 (201)
T 3ltj_A          106 ---ERAVEPLIKALKDE-DWFVRIAAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----  167 (201)
T ss_dssp             ---GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----
T ss_pred             ---HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----
Confidence               45889999999888 89999999999988743          4678999999999999999999999998842    


Q ss_pred             hHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          168 STLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       168 ~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                            ..+++.|..++.+.+ +.++..|..+|..+.
T Consensus       168 ------~~~~~~L~~~l~d~~-~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          168 ------ERVRAAMEKLAETGT-GFARKVAVNYLETHK  197 (201)
T ss_dssp             ------HHHHHHHHHHHHHCC-HHHHHHHHHHHHHCC
T ss_pred             ------hhHHHHHHHHHhCCC-HHHHHHHHHHHHHHH
Confidence                  347889999998874 789999999998764

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.27  E-value=3.4e-10  Score=92.05  Aligned_cols=187  Identities=10%  Similarity=0.086  Sum_probs=112.6

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      ...++.|+..|+++++.++..|++.|..+..           . +.++.|+.+|+++++.++..++.+|..+...+....
T Consensus        22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~-~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~   89 (280)
T 1oyz_A           22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------Q-DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED   89 (280)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------H-HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred             HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------c-hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence            3478999999999999999999999988752           2 568888888988888999999999988765433211


Q ss_pred             HhhhcccHHHHHH-HHhccCCHHHHHHHHHHHHHhcccchh--------------------hh-------hhcccCcHHH
Q 044293           87 SLASMETIYRLNW-IIQSSSSQETVKLASSLICSLAMLDKN--------------------KA-------RFGVAGTVQV  138 (236)
Q Consensus        87 ~i~~~g~i~~L~~-lL~~~~~~~~~~~a~~~L~~Ls~~~~~--------------------~~-------~i~~~g~i~~  138 (236)
                           ..++.|.+ ++++. ++.++..++++|.++......                    +.       .++..++++.
T Consensus        90 -----~l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~  163 (280)
T 1oyz_A           90 -----NVFNILNNMALNDK-SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPL  163 (280)
T ss_dssp             -----HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHH
T ss_pred             -----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence                 12333332 23334 566777777776666421100                    00       0011235555


Q ss_pred             HHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCC
Q 044293          139 LVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQ  218 (236)
Q Consensus       139 Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~  218 (236)
                      |+.++.++++.++..++++|..+....        ..+++.++.++.+.+ +.++..|+.+|..+.          ... 
T Consensus       164 L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~~~----------~~~-  223 (280)
T 1oyz_A          164 LINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKN-EEVRIEAIIGLSYRK----------DKR-  223 (280)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSC-HHHHHHHHHHHHHTT----------CGG-
T ss_pred             HHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhC----------CHh-
Confidence            555555555555555555555543110        134566666666553 556666666666553          223 


Q ss_pred             cHHHHHHHhhCCc
Q 044293          219 IVSLMVDVLKGRS  231 (236)
Q Consensus       219 ~i~~lv~~l~~~~  231 (236)
                      .++.|+..+++++
T Consensus       224 ~~~~L~~~l~d~~  236 (280)
T 1oyz_A          224 VLSVLCDELKKNT  236 (280)
T ss_dssp             GHHHHHHHHTSSS
T ss_pred             hHHHHHHHhcCcc
Confidence            3677777776643

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.24  E-value=3.5e-11  Score=110.03  Aligned_cols=193  Identities=16%  Similarity=0.125  Sum_probs=145.5

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHH-hhccCCChHHHHHHHHHHHhhCCCC--ch
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLL-GLSKSSSPIIRTLSLSILLNLSLNP--DL   84 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~~--~~   84 (236)
                      +.|.-+++.|++++++.|..|+.+|.+++. ++..++.+.+. |+|..++ .+|..++.++++.|+++|.||+.+.  +.
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~-~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLRE-QVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHT-THHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHc-CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            345667888999999999999999999997 58888888887 8887765 5788889999999999999999875  45


Q ss_pred             hHHhhhcccHHHHHHHHhccC-------------C-------HHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhh
Q 044293           85 KQSLASMETIYRLNWIIQSSS-------------S-------QETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAV  143 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~-------------~-------~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL  143 (236)
                      +..+.+.|++++|..++++..             .       .++..+++.+|++||... +....+...++++.|+..|
T Consensus       112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L  191 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL  191 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence            788889999999999986420             0       134456888999998755 4455677789999999998


Q ss_pred             cCC---CcHHHHHHHHHHHHHhcCC-CChHHHHHhCcHH---HHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          144 SAP---SNPAGHHLLSSLAELVQFH-GNSTLAVRAGAVS---ELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       144 ~~~---~~~~~~~a~~aL~~L~~~~-~~~~~~~~~g~i~---~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                      .+.   ...+...|+.+|+.++... +..+.+.+.|...   .++.+.+..+  .....++.+|.|+.
T Consensus       192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~--~~~~la~giL~Ni~  257 (684)
T 4gmo_A          192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD--PRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC--TTHHHHHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc--HHHHHHHHHHHhHh
Confidence            543   3468899999999999854 3444555555433   3333333432  34457788888874

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.23  E-value=2.4e-11  Score=111.10  Aligned_cols=167  Identities=13%  Similarity=0.063  Sum_probs=134.2

Q ss_pred             CcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHH-HHhccCCHHHHHHHHHHHHHhcccc--hhh
Q 044293           51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNW-IIQSSSSQETVKLASSLICSLAMLD--KNK  127 (236)
Q Consensus        51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~~~~~~a~~~L~~Ls~~~--~~~  127 (236)
                      +.|.++++.|++++++.|..|+.+|.+++.++..+..+...|+|.+++. +|.+. +.+++..|+++|.||+.+.  +.+
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCchHH
Confidence            3466677889999999999999999999998888999988899888765 56655 8999999999999999764  677


Q ss_pred             hhhcccCcHHHHHHhhcCCC---------------------cHHHHHHHHHHHHHhcC-CCChHHHHHhCcHHHHHHHhc
Q 044293          128 ARFGVAGTVQVLVKAVSAPS---------------------NPAGHHLLSSLAELVQF-HGNSTLAVRAGAVSELIHLIG  185 (236)
Q Consensus       128 ~~i~~~g~i~~Lv~lL~~~~---------------------~~~~~~a~~aL~~L~~~-~~~~~~~~~~g~i~~lv~ll~  185 (236)
                      ..+.+.|++++|..++.+..                     .....+++.+|++||.+ .+....+...|.+|.++.+|.
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence            88889999999999986411                     12335678889999974 455667778899999999985


Q ss_pred             CC--ChhhHHHHHHHHHHHHcCC-hhhHHHHHhcCC
Q 044293          186 ST--EAEDLAGTSLAVLNLLARF-DEGMIALTKTDQ  218 (236)
Q Consensus       186 ~~--~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~  218 (236)
                      +.  ...++...|+.+|..++.+ ++..+.+.+.+.
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~  228 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQE  228 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCS
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcch
Confidence            42  2357889999999999975 577777777664

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.20  E-value=1.1e-09  Score=88.96  Aligned_cols=180  Identities=11%  Similarity=0.038  Sum_probs=125.4

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-------------------hHHHH----HHHhc--------cCcHHHH
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVS-------------------PQYRS----LLAQT--------DGAISTL   56 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~-------------------~~~~~----~i~~~--------~g~i~~L   56 (236)
                      +.++.|+.+|+++++.++..|+++|..+....                   +..|.    .+...        +..++.|
T Consensus        54 ~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L  133 (280)
T 1oyz_A           54 DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQS  133 (280)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHH
Confidence            46777777777777777777777776654221                   11111    01100        1345555


Q ss_pred             HhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcH
Q 044293           57 LGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTV  136 (236)
Q Consensus        57 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i  136 (236)
                      +.+|+++++.++..++.+|.++..          .+.++.|+.++++. ++.++..|+++|..+...        ...++
T Consensus       134 ~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~--------~~~~~  194 (280)
T 1oyz_A          134 QITAFDKSTNVRRATAFAISVIND----------KATIPLLINLLKDP-NGDVRNWAAFAININKYD--------NSDIR  194 (280)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCC--------CHHHH
T ss_pred             HHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccC--------cHHHH
Confidence            566666666666666666665432          35889999999887 889999999999887432        23678


Q ss_pred             HHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhc
Q 044293          137 QVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKT  216 (236)
Q Consensus       137 ~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~  216 (236)
                      +.|+.++.++++.++..|+.+|..+.          ...++|.++.++.+.+   ++..++.+|..+..          .
T Consensus       195 ~~L~~~l~d~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d~~---vr~~a~~aL~~i~~----------~  251 (280)
T 1oyz_A          195 DCFVEMLQDKNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKKNT---VYDDIIEAAGELGD----------K  251 (280)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTSSS---CCHHHHHHHHHHCC----------G
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcCcc---HHHHHHHHHHhcCc----------h
Confidence            99999999999999999999998886          2468999999998753   67788888888754          1


Q ss_pred             CCcHHHHHHHhhCC
Q 044293          217 DQIVSLMVDVLKGR  230 (236)
Q Consensus       217 g~~i~~lv~~l~~~  230 (236)
                      . .++.|.++++..
T Consensus       252 ~-~~~~L~~~l~~~  264 (280)
T 1oyz_A          252 T-LLPVLDTMLYKF  264 (280)
T ss_dssp             G-GHHHHHHHHTTS
T ss_pred             h-hhHHHHHHHhcC
Confidence            3 478999988653

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.99  E-value=1.8e-09  Score=100.88  Aligned_cols=217  Identities=11%  Similarity=0.043  Sum_probs=152.7

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      .+.++.++..+.+++++++..++++|..++...++.-....+  +.++.++..+++.++.++..|+.++..++.++..+.
T Consensus       214 ~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~--~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~  291 (852)
T 4fdd_A          214 DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH--NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKD  291 (852)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHH
Confidence            467788888888899999999999999999876543222222  578888888888899999999999999998765444


Q ss_pred             Hhh--hcccHHHHHHHHh----------cc--C---------CHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhh
Q 044293           87 SLA--SMETIYRLNWIIQ----------SS--S---------SQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAV  143 (236)
Q Consensus        87 ~i~--~~g~i~~L~~lL~----------~~--~---------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL  143 (236)
                      .+.  -...+|.++..+.          .+  +         +..++..|+.+|..++....  ..+. ...++.+...+
T Consensus       292 ~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~-~~l~~~l~~~l  368 (852)
T 4fdd_A          292 VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL-PHILPLLKELL  368 (852)
T ss_dssp             HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHHHHHHh
Confidence            332  1256677776662          11  0         11257888889888886543  1222 35788888888


Q ss_pred             cCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhh--HHHHHhcCCcHH
Q 044293          144 SAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEG--MIALTKTDQIVS  221 (236)
Q Consensus       144 ~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~--~~~i~~~g~~i~  221 (236)
                      .+.+..++..|+++|..++........-.-.+++|.++..+++. ++.++..|+.++.+++..-..  ...+.. + +++
T Consensus       369 ~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~-~-ll~  445 (852)
T 4fdd_A          369 FHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTYLK-P-LMT  445 (852)
T ss_dssp             TCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTTTTHH-H-HHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHHHHHH-H-HHH
Confidence            88899999999999999997543221112356789999999887 478999999999998853211  111221 2 467


Q ss_pred             HHHHHhhCCc
Q 044293          222 LMVDVLKGRS  231 (236)
Q Consensus       222 ~lv~~l~~~~  231 (236)
                      .+++.+++.+
T Consensus       446 ~L~~~L~d~~  455 (852)
T 4fdd_A          446 ELLKRILDSN  455 (852)
T ss_dssp             HHHHHHTCSS
T ss_pred             HHHHHHhCCC
Confidence            7777776544

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.93  E-value=2e-08  Score=90.27  Aligned_cols=189  Identities=11%  Similarity=0.095  Sum_probs=140.9

Q ss_pred             hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293            4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD   83 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~   83 (236)
                      +-.+..++.+.+.+.++++.+|..|+.++.++...+++.   +... ++++.|..+|.++++.++..|+.+|..++.++.
T Consensus       117 ~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~-~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~  192 (591)
T 2vgl_B          117 KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQ-GFLDSLRDLIADSNPMVVANAVAALSEISESHP  192 (591)
T ss_dssp             GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHH-HHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccc-cHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence            445667788999999999999999999999998876553   2334 789999999999999999999999999988764


Q ss_pred             hh-HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293           84 LK-QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV  162 (236)
Q Consensus        84 ~~-~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~  162 (236)
                      .. ..-...+.++.|+..+... ++-.+.....+|..++..+...    ....++.+...+++.++.++..|++++.++.
T Consensus       193 ~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~  267 (591)
T 2vgl_B          193 NSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFL  267 (591)
T ss_dssp             SCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred             CccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence            32 1111345677888888777 7888888888888877543211    1457888888899999999999999999987


Q ss_pred             c----CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          163 Q----FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       163 ~----~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                      .    +++....+ -..+.+.|+.++. + ++.++-.++..|..+.
T Consensus       268 ~~~~~~~~~~~~~-~~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~  310 (591)
T 2vgl_B          268 ELLPKDSDYYNML-LKKLAPPLVTLLS-G-EPEVQYVALRNINLIV  310 (591)
T ss_dssp             CSCCBTTBSHHHH-HHHTHHHHHHHTT-S-CHHHHHHHHHHHHHHH
T ss_pred             hccCCCHHHHHHH-HHHHHHHHHHHhc-C-CccHHHHHHHHHHHHH
Confidence            4    23333332 3455677777665 3 3677777777777765

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.92  E-value=1.6e-08  Score=94.36  Aligned_cols=218  Identities=14%  Similarity=0.050  Sum_probs=150.8

Q ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293            6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK   85 (236)
Q Consensus         6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~   85 (236)
                      ....++.+++.++++++++|..|+++|..+....+.......  ++.++.++.++.+++++++..++.+|..++......
T Consensus       172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~--~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~  249 (852)
T 4fdd_A          172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI--DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR  249 (852)
T ss_dssp             HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH--HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHH
Confidence            355778888888889999999999999888765432211112  257888889898999999999999999987754321


Q ss_pred             HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc--cCcHHHHHHhhc-----------C-------
Q 044293           86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV--AGTVQVLVKAVS-----------A-------  145 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~-----------~-------  145 (236)
                      ..-.-.+.++.++..+++. +++++..|+.++..++.....+..+..  ...+|.++..+.           +       
T Consensus       250 ~~~~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~  328 (852)
T 4fdd_A          250 LLPHMHNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGG  328 (852)
T ss_dssp             HGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccc
Confidence            1111135788888888877 799999999999999876543433321  356777777772           2       


Q ss_pred             ----CCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhH-HHHHhcCCcH
Q 044293          146 ----PSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGM-IALTKTDQIV  220 (236)
Q Consensus       146 ----~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~-~~i~~~g~~i  220 (236)
                          .+..+++.+..+|..++.....  .+ -..++|.+.+.+.+.+ ..+++.|+.+|.+++...... ..+. .+ ++
T Consensus       329 dd~~~~~~vr~~a~~~L~~la~~~~~--~~-~~~l~~~l~~~l~~~~-~~~R~aa~~alg~i~~~~~~~~~~~l-~~-~l  402 (852)
T 4fdd_A          329 DDTISDWNLRKCSAAALDVLANVYRD--EL-LPHILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYL-PE-LI  402 (852)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHHTCSS-HHHHHHHHHHHHHTTTTTHHHHGGGH-HH-HH
T ss_pred             ccccccchHHHHHHHHHHHHHHhccH--HH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcchHHHHHHH-HH-HH
Confidence                1223577888899888864321  11 1246778888887764 788999999999999765322 2222 22 57


Q ss_pred             HHHHHHhhCCcc
Q 044293          221 SLMVDVLKGRSM  232 (236)
Q Consensus       221 ~~lv~~l~~~~~  232 (236)
                      +.++..+++.++
T Consensus       403 ~~l~~~l~d~~~  414 (852)
T 4fdd_A          403 PHLIQCLSDKKA  414 (852)
T ss_dssp             HHHHHHTTCSSH
T ss_pred             HHHHHHcCCCCH
Confidence            888888876553

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.87  E-value=7.5e-08  Score=85.47  Aligned_cols=188  Identities=10%  Similarity=0.048  Sum_probs=137.0

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      ...++.+...++++++.+|..|+.+|..++..-..  +.. .. ..+|.+..+++++++.+|..|+.+|..++..-... 
T Consensus       163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~--~~~-~~-~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-  237 (588)
T 1b3u_A          163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL--DNV-KS-EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-  237 (588)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH--HHH-HH-THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH-
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH--HhH-HH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH-
Confidence            45667777777888999999999999998865322  122 23 78999999999889999999999988876542211 


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC-
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH-  165 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-  165 (236)
                       ......+|.+..++++. +..+|..++.+|..++......  ......++.+++++.+.++.++..|+.+|..++..- 
T Consensus       238 -~~~~~~~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  313 (588)
T 1b3u_A          238 -DLEALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS  313 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred             -HHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Confidence             12345778888888776 7899999999999887643211  123467899999999999999999999999998743 


Q ss_pred             -CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          166 -GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       166 -~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                       +.+........+|.+..++++.+ ..++..++.+|..++
T Consensus       314 ~~~~~~~~~~~l~p~l~~~l~d~~-~~vR~~a~~~l~~l~  352 (588)
T 1b3u_A          314 ADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLS  352 (588)
T ss_dssp             TTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGH
T ss_pred             hhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence             22222334567788888887764 567777776666655

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.86  E-value=1.1e-08  Score=81.49  Aligned_cols=188  Identities=11%  Similarity=0.127  Sum_probs=139.7

Q ss_pred             chHHHhHHH-HHHHHhcCCCHHHHHHHHHHHHHHhcCChHHH-HHHHhccCcHHHHHhhcc-CCChHHHHHHHHHHHhhC
Q 044293            3 APRVRETIN-NCVSRSQSDSYEDQQKALQTLASITRVSPQYR-SLLAQTDGAISTLLGLSK-SSSPIIRTLSLSILLNLS   79 (236)
Q Consensus         3 ~~~~~~~i~-~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~   79 (236)
                      +.++.+-++ .+.+.+.+.++..|..|+..|..+....+... ..+   ..+++.|...+. ..+..++..|+.++..++
T Consensus         9 ~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~---~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la   85 (242)
T 2qk2_A            9 PVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY---GALVSALKKVITKDSNVVLVAMAGKCLALLA   85 (242)
T ss_dssp             CBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred             cccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH---HHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            334444444 47888889999999999999999887532211 111   145777788884 889999999999999998


Q ss_pred             CCCchhHHhh--hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHH
Q 044293           80 LNPDLKQSLA--SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSS  157 (236)
Q Consensus        80 ~~~~~~~~i~--~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a  157 (236)
                      ..-  +..+.  -...+|.++..+.+. +..++..|..+|..+......      ...++.+...+.+.++.++..++..
T Consensus        86 ~~l--~~~~~~~~~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~  156 (242)
T 2qk2_A           86 KGL--AKRFSNYASACVPSLLEKFKEK-KPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALF  156 (242)
T ss_dssp             HHH--GGGGHHHHHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHH--hhhHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHH
Confidence            532  22222  245889999999887 799999999999998775421      2468889999999999999999999


Q ss_pred             HHHHhc-CC-C--ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293          158 LAELVQ-FH-G--NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       158 L~~L~~-~~-~--~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~  205 (236)
                      |..+.. +. +  ....+  ...+|.++.++.+.. ++++..|..++..++.
T Consensus       157 l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~-~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          157 IARALTRTQPTALNKKLL--KLLTTSLVKTLNEPD-PTVRDSSAEALGTLIK  205 (242)
T ss_dssp             HHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHH
Confidence            999544 32 2  22222  368899999998874 7899999999988774

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.76  E-value=9.3e-08  Score=85.91  Aligned_cols=206  Identities=14%  Similarity=0.159  Sum_probs=142.5

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL   84 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~   84 (236)
                      ++....+.+++.+++++.+.++-+...+..++..+++.    ..  -++..+.+-|+++++.+|..|+.+|+++.. ++ 
T Consensus        46 d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~----~~--l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~-  117 (591)
T 2vgl_B           46 DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDM----AI--MAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DK-  117 (591)
T ss_dssp             CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHH----HH--TTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GG-
T ss_pred             ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchH----HH--HHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HH-
Confidence            34456677777778888888887878887777644332    21  457778888888899999999999988762 22 


Q ss_pred             hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293           85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF  164 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~  164 (236)
                         + ....++.+.+++.+. ++.+++.|+.++.++....  ...+.+.+.++.|..+|.+.++.++..|+.+|..++..
T Consensus       118 ---~-~~~l~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~--p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          118 ---I-TEYLCEPLRKCLKDE-DPYVRKTAAVCVAKLHDIN--AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             ---G-HHHHHHHHHHHSSCS-CHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred             ---H-HHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhhC--hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence               1 233567889999887 8999999999999997733  22333368899999999999999999999999999985


Q ss_pred             CC-C---------hHHHHH----------------------------hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-
Q 044293          165 HG-N---------STLAVR----------------------------AGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-  205 (236)
Q Consensus       165 ~~-~---------~~~~~~----------------------------~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-  205 (236)
                      .. .         -..++.                            ...++.+..++++. ++.+.-.|++++..+.. 
T Consensus       191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~~  269 (591)
T 2vgl_B          191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHA-NSAVVLSAVKVLMKFLEL  269 (591)
T ss_dssp             CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSS-TTHHHHHHHHHHHHSCCS
T ss_pred             CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhc
Confidence            43 2         111111                            12344444455554 35677788888888763 


Q ss_pred             ---ChhhHHHHHhcCCcHHHHHHHhh
Q 044293          206 ---FDEGMIALTKTDQIVSLMVDVLK  228 (236)
Q Consensus       206 ---~~~~~~~i~~~g~~i~~lv~~l~  228 (236)
                         +++....+...  +.+.|+.++.
T Consensus       270 ~~~~~~~~~~~~~~--~~~~L~~L~~  293 (591)
T 2vgl_B          270 LPKDSDYYNMLLKK--LAPPLVTLLS  293 (591)
T ss_dssp             CCBTTBSHHHHHHH--THHHHHHHTT
T ss_pred             cCCCHHHHHHHHHH--HHHHHHHHhc
Confidence               34555555443  3567776554

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.73  E-value=2.1e-09  Score=77.62  Aligned_cols=122  Identities=12%  Similarity=0.005  Sum_probs=91.3

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL   84 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~   84 (236)
                      .-.+.++.++..|+++++.+|..|++.|..+..             ..++.|+.+|+++++.+|..++.+|.++..    
T Consensus         9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~----   71 (131)
T 1te4_A            9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGD-------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----   71 (131)
T ss_dssp             ------------CCSSCCCSSSSCCSSTTSCSS-------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----
T ss_pred             cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC----
Confidence            346788899999999998899888777765421             236889999999999999999999988753    


Q ss_pred             hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293           85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE  160 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~  160 (236)
                            ...++.|+..|++. ++.++..|+++|.++.          ...+++.|+.++.+.++.++..|+.+|..
T Consensus        72 ------~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 ------ERAVEPLIKLLEDD-SGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ------HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                  34689999999887 8999999999999875          24568999999998888999999988754

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.68  E-value=2.3e-07  Score=82.30  Aligned_cols=185  Identities=11%  Similarity=0.041  Sum_probs=117.9

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS   87 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~   87 (236)
                      ..+|.+...+++.++.++..++..|..++..-.  .. +... ..+|.+..+|..++..+|+.|+.++..++..-...  
T Consensus       402 ~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~-~~~~-~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--  475 (588)
T 1b3u_A          402 SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG--VE-FFDE-KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--  475 (588)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC--GG-GCCH-HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcC--HH-HHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--
Confidence            345555555555555566656555555543200  00 1111 45677777777777788888888887765432211  


Q ss_pred             hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCC
Q 044293           88 LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGN  167 (236)
Q Consensus        88 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~  167 (236)
                      ......+|.|..++++. +..++..++.++..++..-...  ......+|.|++.+.++++.++..++++|..++..-..
T Consensus       476 ~~~~~llp~l~~~~~~~-~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~  552 (588)
T 1b3u_A          476 WAHATIIPKVLAMSGDP-NYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN  552 (588)
T ss_dssp             HHHHHTHHHHHHTTTCS-CHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred             hHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch
Confidence            12345677777766665 7888888888888877643211  12246788888888888888888999999888864321


Q ss_pred             hHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          168 STLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       168 ~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                        ......++|.+..++.+.+ .+++..|..+|..+.
T Consensus       553 --~~~~~~~~p~l~~l~~d~d-~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          553 --STLQSEVKPILEKLTQDQD-VDVKYFAQEALTVLS  586 (588)
T ss_dssp             --HHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTT
T ss_pred             --hhhHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhh
Confidence              2233566777777777664 788888888887654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.64  E-value=2.5e-06  Score=66.58  Aligned_cols=187  Identities=12%  Similarity=0.122  Sum_probs=143.6

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-Cch
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDL   84 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~   84 (236)
                      .+.+..+..+|...|+.++..++.+|..+.+.- ...+....+  ..++.++.++.+.+..+.-.|+.+|..+-.+ |-.
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e--~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~  109 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE--RHLDVFINALSQENEKVTIKALRALGYLVKDVPMG  109 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH--HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH--HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC
Confidence            457788899999999999999999999988762 334555555  5899999999999999999999999876544 333


Q ss_pred             hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293           85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF  164 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~  164 (236)
                      ...+..  .+..|.++++++ +.-.+..|+..+..+.....      ..+.+..+.+++.+.+.+++..++++|.+++..
T Consensus       110 ~~~y~K--l~~aL~dlik~~-~~il~~eaae~Lgklkv~~~------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          110 SKTFLK--AAKTLVSLLESP-DDMMRIETIDVLSKLQPLED------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             HHHHHH--HHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHH--HHHHHHHHhcCC-CchHHHHHHHHhCcCCcccc------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence            333322  456788888887 88999999999999822221      246688899999889999999999999999985


Q ss_pred             CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh
Q 044293          165 HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD  207 (236)
Q Consensus       165 ~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~  207 (236)
                      .+....+  .+++.-+-++|++.| +.+++.|+.+|..+.+.|
T Consensus       181 S~D~~i~--~~I~~eI~elL~~eD-~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          181 SADSGHL--TLILDEIPSLLQNDN-EFIVELALDVLEKALSFP  220 (265)
T ss_dssp             CSSCCCG--GGTTTTHHHHHTCSC-HHHHHHHHHHHHHHTTSC
T ss_pred             cCCHHHH--HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCc
Confidence            4332221  244555677888874 789999999999988765

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.63  E-value=6.7e-07  Score=76.93  Aligned_cols=217  Identities=9%  Similarity=0.027  Sum_probs=144.2

Q ss_pred             HhHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCChHHH-HHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293            7 RETINNCVSRSQSD--SYEDQQKALQTLASITRVSPQYR-SLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD   83 (236)
Q Consensus         7 ~~~i~~lv~~L~~~--~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~   83 (236)
                      ...++.++..++++  ++.+|..|++++..+...-.++- ...... -.++.+...+.+++++++..++.++..++....
T Consensus       171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~  249 (462)
T 1ibr_B          171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH-FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY  249 (462)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            55777888888877  78999999999988654311111 111111 246777777888889999999999998775432


Q ss_pred             h--hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchh------------------hhhhcc---cCcHHHHH
Q 044293           84 L--KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN------------------KARFGV---AGTVQVLV  140 (236)
Q Consensus        84 ~--~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~------------------~~~i~~---~g~i~~Lv  140 (236)
                      .  +..+ ..+.++.++..++.. +++++..|+..+..++.....                  ...+.+   ...+|.++
T Consensus       250 ~~~~~~~-~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~  327 (462)
T 1ibr_B          250 QYMETYM-GPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT  327 (462)
T ss_dssp             GGCTTTT-TTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHH
Confidence            2  1211 116788888888776 799999999998888764310                  011111   34567777


Q ss_pred             HhhcCC-------CcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh--hHH
Q 044293          141 KAVSAP-------SNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE--GMI  211 (236)
Q Consensus       141 ~lL~~~-------~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~--~~~  211 (236)
                      +.+...       +...+..|+.+|..++..-..  .+ -..++|.+...+.+.+ ..+++.|+.+|..++....  .-.
T Consensus       328 ~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~-~~~~~~~l~~~l~~~~-~~~r~aal~~l~~l~~~~~~~~~~  403 (462)
T 1ibr_B          328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI-VPHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQLK  403 (462)
T ss_dssp             HHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--TH-HHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCTTTTC
T ss_pred             HHHHhcccccccccchHHHHHHHHHHHHHHhccH--HH-HHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHhcCCcHHHHH
Confidence            777542       335788999999999875432  22 2356778888887764 6788999999999997532  111


Q ss_pred             HHHhcCCcHHHHHHHhhCCcc
Q 044293          212 ALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       212 ~i~~~g~~i~~lv~~l~~~~~  232 (236)
                      ...  ..++|.++..+++.++
T Consensus       404 ~~l--~~~~~~l~~~l~d~~~  422 (462)
T 1ibr_B          404 PLV--IQAMPTLIELMKDPSV  422 (462)
T ss_dssp             TTT--TTHHHHHHHGGGCSCH
T ss_pred             HHH--HHHHHHHHHHhcCCCH
Confidence            122  2368888888876554

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.60  E-value=8.6e-09  Score=74.32  Aligned_cols=119  Identities=12%  Similarity=0.016  Sum_probs=89.8

Q ss_pred             CcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhh
Q 044293           51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARF  130 (236)
Q Consensus        51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i  130 (236)
                      ..++.++.+|+++++.+|..|+.+|..+..           ..++.|+..|++. ++.++..|+++|.++..        
T Consensus        12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--------   71 (131)
T 1te4_A           12 SGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--------   71 (131)
T ss_dssp             ---------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--------
T ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--------
Confidence            678999999999999888888877766532           1268999999987 89999999999988753        


Q ss_pred             cccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHH
Q 044293          131 GVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNL  202 (236)
Q Consensus       131 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~  202 (236)
                        ...++.|+..+.++++.++..|+++|..+..          ..+++.|+.++++.+ +.++..|+.+|..
T Consensus        72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~-~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGT-GFARKVAVNYLET  130 (131)
T ss_dssp             --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCC-THHHHHHHHHGGG
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCC-HHHHHHHHHHHHh
Confidence              3468999999999999999999999998862          356899999998764 6788888887754

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.56  E-value=4.3e-07  Score=72.76  Aligned_cols=189  Identities=7%  Similarity=0.057  Sum_probs=133.8

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHH-HhcCChHHHHHHHhccCcHHHHHhhc-cCCChHHHHHHHHHHHhhCCCCchh-HHh
Q 044293           12 NCVSRSQSDSYEDQQKALQTLAS-ITRVSPQYRSLLAQTDGAISTLLGLS-KSSSPIIRTLSLSILLNLSLNPDLK-QSL   88 (236)
Q Consensus        12 ~lv~~L~~~~~~~~~~a~~~L~~-l~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~-~~i   88 (236)
                      .+.+.+++.++..|..|+..|.. +..+.+.....-......+..|...+ +..+..++..|+.+|..++..=  + ..+
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l--~~~~f   97 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL--KTPGF   97 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH--CTTTS
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc--ccccc
Confidence            35667789999999999999999 87543322100001013566777777 5778899999999999998421  2 222


Q ss_pred             h---hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhc--ccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293           89 A---SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG--VAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus        89 ~---~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~  163 (236)
                      .   -.-.+|.++..++.. ...++..+..+|..++..-+. ....  -...++.|+..|.+.++.++..++.+|..+..
T Consensus        98 ~~~y~~~llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~  175 (249)
T 2qk1_A           98 SKDYVSLVFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK  175 (249)
T ss_dssp             CHHHHHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            2   134789999999877 688988888888887764321 1111  12578889999999999999999999988886


Q ss_pred             CCCC-hHHH--HH-hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293          164 FHGN-STLA--VR-AGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       164 ~~~~-~~~~--~~-~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~  205 (236)
                      .... ...+  .- ...+|.+.+++.+++ +++++.|..+|..++.
T Consensus       176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~-~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQ-PAIRTIGFESFAILIK  220 (249)
T ss_dssp             HCCSCSHHHHHHHTTTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHH
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence            4332 1332  22 588999999998884 7899999988888763

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.56  E-value=7.5e-07  Score=76.60  Aligned_cols=195  Identities=11%  Similarity=0.041  Sum_probs=132.5

Q ss_pred             HhHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhhccCC--ChHHHHHHHHHHHhhCCC
Q 044293            7 RETINNCVSRSQSD--SYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGLSKSS--SPIIRTLSLSILLNLSLN   81 (236)
Q Consensus         7 ~~~i~~lv~~L~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~   81 (236)
                      .+.++.+++.++++  ++..+..++.+|..++... +..-.....  .+++.++..+.+.  ++.+|..|+.++.++...
T Consensus       127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~  204 (462)
T 1ibr_B          127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN--EILTAIIQGMRKEEPSNNVKLAATNALLNSLEF  204 (462)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH--HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH--HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            56889999999888  8899999999999998642 221122222  5788888889887  789999999999986543


Q ss_pred             Cc-hh-HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchh--hhhhcccCcHHHHHHhhcCCCcHHHHHHHHH
Q 044293           82 PD-LK-QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN--KARFGVAGTVQVLVKAVSAPSNPAGHHLLSS  157 (236)
Q Consensus        82 ~~-~~-~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a  157 (236)
                      -. +- ......-.++.+...+.+. +.+++..++.+|..++.....  ...+ ..+.++.++..+.+.++.++..++.+
T Consensus       205 ~~~~~~~~~~~~~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~  282 (462)
T 1ibr_B          205 TKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEF  282 (462)
T ss_dssp             THHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred             HHHhhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            11 10 0111112466666666666 899999999999988765421  1112 12788888888888888999999999


Q ss_pred             HHHHhcCC------------------CChHHHHH---hCcHHHHHHHhcCC------ChhhHHHHHHHHHHHHcC
Q 044293          158 LAELVQFH------------------GNSTLAVR---AGAVSELIHLIGST------EAEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       158 L~~L~~~~------------------~~~~~~~~---~g~i~~lv~ll~~~------~~~~~~~~a~~~L~~l~~  205 (236)
                      +..++...                  .....+++   ...+|.+++.+...      +...++..|..+|..++.
T Consensus       283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~  357 (462)
T 1ibr_B          283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT  357 (462)
T ss_dssp             HHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence            98887642                  11111111   34677788888542      123567788888887764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.51  E-value=2.8e-06  Score=67.38  Aligned_cols=148  Identities=12%  Similarity=0.092  Sum_probs=115.0

Q ss_pred             HHHhHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC
Q 044293            5 RVRETINNCVSRS-QSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP   82 (236)
Q Consensus         5 ~~~~~i~~lv~~L-~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~   82 (236)
                      ++.+.++.|...+ ++.+..++..|+.++..++.. .+.... ..+  .++|.++..+....+.+|..+..+|.++....
T Consensus        53 ~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~~~--~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~  129 (242)
T 2qk2_A           53 EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-YAS--ACVPSLLEKFKEKKPNVVTALREAIDAIYAST  129 (242)
T ss_dssp             CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-HHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-HHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC
Confidence            3457788888889 489999999999999999864 122223 333  48999999999999999999999999887654


Q ss_pred             chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchh----hhhhcccCcHHHHHHhhcCCCcHHHHHHHHHH
Q 044293           83 DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN----KARFGVAGTVQVLVKAVSAPSNPAGHHLLSSL  158 (236)
Q Consensus        83 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~----~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL  158 (236)
                      ..      ...++.+...+++. ++.++..++..|..+......    ...+  ...+|.|+..+.+.+..++..|..++
T Consensus       130 ~~------~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l  200 (242)
T 2qk2_A          130 SL------EAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEAL  200 (242)
T ss_dssp             CH------HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             CH------HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            31      24678888899887 899999999999986443211    1222  47899999999999999999999999


Q ss_pred             HHHhcC
Q 044293          159 AELVQF  164 (236)
Q Consensus       159 ~~L~~~  164 (236)
                      ..++..
T Consensus       201 ~~l~~~  206 (242)
T 2qk2_A          201 GTLIKL  206 (242)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888763

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.48  E-value=4.7e-06  Score=65.05  Aligned_cols=152  Identities=14%  Similarity=0.124  Sum_probs=123.5

Q ss_pred             CchHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293            2 SAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN   81 (236)
Q Consensus         2 ~~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~   81 (236)
                      +.+.+++..+.++..+++.++.+-.+|+++|..+..+.+-....+.+   .+..|.+++.++++-.++.++..+.-+.--
T Consensus        69 ~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K---l~~aL~dlik~~~~il~~eaae~Lgklkv~  145 (265)
T 3b2a_A           69 RMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK---AAKTLVSLLESPDDMMRIETIDVLSKLQPL  145 (265)
T ss_dssp             HHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH---HHHHHHHHTTSCCHHHHHHHHHHHHHCCBS
T ss_pred             cHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHHhcCCCchHHHHHHHHhCcCCcc
Confidence            45667889999999999999999999999999999887666666664   488899999999999999999999988221


Q ss_pred             CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293           82 PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL  161 (236)
Q Consensus        82 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L  161 (236)
                      ..      ..+.+..+..++.+. +..++..+..++.+++...+.+..+.  +.+.-+-.+|++.++.+++.|+.+|-.+
T Consensus       146 ~~------~~~V~~~l~sLl~Sk-d~~vK~agl~~L~eia~~S~D~~i~~--~I~~eI~elL~~eD~~l~e~aLd~Le~i  216 (265)
T 3b2a_A          146 ED------SKLVRTYINELVVSP-DLYTKVAGFCLFLNMLNSSADSGHLT--LILDEIPSLLQNDNEFIVELALDVLEKA  216 (265)
T ss_dssp             CC------CHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHGGGCSSCCCGG--GTTTTHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             cc------hHHHHHHHHHHHhCC-ChhHHHHHHHHHHHhhcccCCHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            11      245667888888666 89999999999999998776555543  4555566788899999999999999988


Q ss_pred             hcCC
Q 044293          162 VQFH  165 (236)
Q Consensus       162 ~~~~  165 (236)
                      ...+
T Consensus       217 ls~p  220 (265)
T 3b2a_A          217 LSFP  220 (265)
T ss_dssp             TTSC
T ss_pred             HcCc
Confidence            8764

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.47  E-value=9.8e-07  Score=85.44  Aligned_cols=215  Identities=13%  Similarity=0.093  Sum_probs=143.2

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL   84 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~   84 (236)
                      .....++.+++.|.+.++.+|..|+.+|..++..-+.  . ...  .+++.|+..+.++++.+|..++.+|..++..-..
T Consensus        45 ~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~-~~~--~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~  119 (1230)
T 1u6g_C           45 SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--Y-QVE--TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP  119 (1230)
T ss_dssp             HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--H-HHH--HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--H-HHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCC
Confidence            3457788899999989999999999999999875333  2 222  4788888888888888999888888887643221


Q ss_pred             h------HHhhhcccHHHHHHHHhc-cCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHH
Q 044293           85 K------QSLASMETIYRLNWIIQS-SSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSS  157 (236)
Q Consensus        85 ~------~~i~~~g~i~~L~~lL~~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a  157 (236)
                      .      ..-.-...+|.|+..++. . +..++..|+.+|..++......-.-.-...++.|+..+.++++.++..|+.+
T Consensus       120 ~~~~~~~~~~~~~~llp~L~~~l~~~~-~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~a  198 (1230)
T 1u6g_C          120 ASSGSALAANVCKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIA  198 (1230)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHSCCS-CHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            1      111234689999999984 5 7899999999999987532110000114677888888888888999999999


Q ss_pred             HHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC-hhhHHHHHhcCCcHHHHHHHhhCC
Q 044293          158 LAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF-DEGMIALTKTDQIVSLMVDVLKGR  230 (236)
Q Consensus       158 L~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~~i~~lv~~l~~~  230 (236)
                      |..++......  + -...++.++..+...+....+..++.++..++.. +..-....  ..+++.++..++..
T Consensus       199 l~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l--~~l~~~ll~~l~d~  267 (1230)
T 1u6g_C          199 LGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCNVD  267 (1230)
T ss_dssp             HHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHSSC
T ss_pred             HHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhcCC
Confidence            99998754322  1 2356788888886542233445566666666532 22111111  23567777766543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.44  E-value=6.2e-06  Score=76.60  Aligned_cols=218  Identities=14%  Similarity=0.093  Sum_probs=140.1

Q ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh-HHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch
Q 044293            6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSP-QYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL   84 (236)
Q Consensus         6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~   84 (236)
                      +...++.+...++++++.+|..|+.++..++.... +.......  ..+|.++..++++++.+|..|++++.+++..-..
T Consensus       364 ~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~--~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  441 (876)
T 1qgr_A          364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI--QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE  441 (876)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCch
Confidence            34566777778888899999999999999987632 32223332  6899999999999999999999999998764322


Q ss_pred             hH--HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch------------hhhhhcc--cCcHHHHHHhhcCC--
Q 044293           85 KQ--SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK------------NKARFGV--AGTVQVLVKAVSAP--  146 (236)
Q Consensus        85 ~~--~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~------------~~~~i~~--~g~i~~Lv~lL~~~--  146 (236)
                      ..  .-.-...++.++..+++  ++.++..++++|.+++....            ....+..  ...++.|+..+...  
T Consensus       442 ~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~  519 (876)
T 1qgr_A          442 AAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG  519 (876)
T ss_dssp             GTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS
T ss_pred             hcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc
Confidence            10  01123577788888865  47889999999999886532            0111221  46788888888764  


Q ss_pred             -CcHHHHHHHHHHHHHhcCC-CChHHHHHhCcHHHHHHHhcC----------CCh----hhHHHHHHHHHHHHcCCh--h
Q 044293          147 -SNPAGHHLLSSLAELVQFH-GNSTLAVRAGAVSELIHLIGS----------TEA----EDLAGTSLAVLNLLARFD--E  208 (236)
Q Consensus       147 -~~~~~~~a~~aL~~L~~~~-~~~~~~~~~g~i~~lv~ll~~----------~~~----~~~~~~a~~~L~~l~~~~--~  208 (236)
                       +..++..+..++..++..- ..... .-...+|.+++.+..          .++    ++++..++.++..++..-  +
T Consensus       520 ~~~~~r~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~  598 (876)
T 1qgr_A          520 HQNNLRSSAYESLMEIVKNSAKDCYP-AVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQ  598 (876)
T ss_dssp             CSTTHHHHHHHHHHHHHHTCCSTTHH-HHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred             chhhHHHHHHHHHHHHHHHCchhhHH-HHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChh
Confidence             3456777888888887643 22222 224566777766642          122    345667788888877532  2


Q ss_pred             hHHHHHhcCCcHHHHHHHhhCC
Q 044293          209 GMIALTKTDQIVSLMVDVLKGR  230 (236)
Q Consensus       209 ~~~~i~~~g~~i~~lv~~l~~~  230 (236)
                      .-..+..  .+++.++.++++.
T Consensus       599 ~~~~~~~--~l~~~l~~~l~~~  618 (876)
T 1qgr_A          599 DALQISD--VVMASLLRMFQST  618 (876)
T ss_dssp             HHHTTHH--HHHHHHHHHC---
T ss_pred             hhhHHHH--HHHHHHHHHHHhc
Confidence            2222221  2466666666654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.43  E-value=4.6e-06  Score=77.34  Aligned_cols=218  Identities=14%  Similarity=0.140  Sum_probs=140.7

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh-HHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSP-QYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK   85 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~   85 (236)
                      ...++.+.+.+++.++..+..|+.++..++.... ..-.....  .+++.|+..+.++++.++..+++++..++..-...
T Consensus       368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  445 (861)
T 2bpt_A          368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRIADSVAES  445 (861)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhh
Confidence            4556666777778889999999999999997632 22222332  57999999999889999999999998877532110


Q ss_pred             --HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch--hhhhhcc--cCcHHHHHHhhcCCC--cHHHHHHHHH
Q 044293           86 --QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK--NKARFGV--AGTVQVLVKAVSAPS--NPAGHHLLSS  157 (236)
Q Consensus        86 --~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~--~g~i~~Lv~lL~~~~--~~~~~~a~~a  157 (236)
                        ..-.-...++.++..+++  ++.++..|+++|.+++..-.  ....+..  ...++.|++.+.+.+  +.++..++.+
T Consensus       446 ~~~~~~~~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~a  523 (861)
T 2bpt_A          446 IDPQQHLPGVVQACLIGLQD--HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSA  523 (861)
T ss_dssp             SCTTTTHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHH
Confidence              000123567888888865  48899999999998876421  0122211  466788888887543  6788899999


Q ss_pred             HHHHhcCCCC-hHHHHHhCcHHHHHHHhcCC--------------ChhhHHHHHHHHHHHHcCC-hhhHHHHHhcCCcHH
Q 044293          158 LAELVQFHGN-STLAVRAGAVSELIHLIGST--------------EAEDLAGTSLAVLNLLARF-DEGMIALTKTDQIVS  221 (236)
Q Consensus       158 L~~L~~~~~~-~~~~~~~g~i~~lv~ll~~~--------------~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~~i~  221 (236)
                      +..++..... ....+ ...+|.+++.+...              ....++..++.+|..++.. +..-..+..  .+++
T Consensus       524 l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~  600 (861)
T 2bpt_A          524 LTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD--MLMG  600 (861)
T ss_dssp             HHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHH
T ss_pred             HHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH--HHHH
Confidence            9998874332 22222 24677777777531              1234667788888877742 221111221  2456


Q ss_pred             HHHHHhhCCc
Q 044293          222 LMVDVLKGRS  231 (236)
Q Consensus       222 ~lv~~l~~~~  231 (236)
                      .++..++..+
T Consensus       601 ~l~~~l~~~~  610 (861)
T 2bpt_A          601 LFFRLLEKKD  610 (861)
T ss_dssp             HHHHHHHSTT
T ss_pred             HHHHHHccCC
Confidence            6666666543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.42  E-value=2.5e-05  Score=64.32  Aligned_cols=186  Identities=17%  Similarity=0.107  Sum_probs=136.2

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS   87 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~   87 (236)
                      -.+..+++.|.+++.+..+.++..|..+...+......|+.. ||+..|+......+..++.-++.++.++=.+.++...
T Consensus       118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~-~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~g  196 (339)
T 3dad_A          118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHS-EGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLG  196 (339)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHT-THHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHh-ccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccc
Confidence            356777888888888899999999998444456788888887 9999999999999999999999999999999888777


Q ss_pred             hh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch-hhhhhccc----------CcHHHHHHhhc---CCCcHHHH
Q 044293           88 LA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK-NKARFGVA----------GTVQVLVKAVS---APSNPAGH  152 (236)
Q Consensus        88 i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~----------g~i~~Lv~lL~---~~~~~~~~  152 (236)
                      ++ ....|..+..++.+. +..+.+.|+..|..++...+ +...+.+.          --.+.|+.+|+   +.+.+.+.
T Consensus       197 vvs~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~  275 (339)
T 3dad_A          197 VVAHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV  275 (339)
T ss_dssp             HHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred             hhCCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence            76 678999999999976 89999999999999987764 33333221          13779999998   55667777


Q ss_pred             HHHHHHHHHhcCCCC---hHHH----HHhCcHHHHHHHhcCC-ChhhHHHH
Q 044293          153 HLLSSLAELVQFHGN---STLA----VRAGAVSELIHLIGST-EAEDLAGT  195 (236)
Q Consensus       153 ~a~~aL~~L~~~~~~---~~~~----~~~g~i~~lv~ll~~~-~~~~~~~~  195 (236)
                      +|+.-+-.+-..-..   +..+    -+.|.=..+...++.. .+++++++
T Consensus       276 ~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          276 YTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            777666444432222   2222    2345555566666553 23444443

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.41  E-value=1.9e-05  Score=71.29  Aligned_cols=189  Identities=13%  Similarity=0.056  Sum_probs=119.4

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL   84 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~   84 (236)
                      -++..++.+.+.|+++++.+|..|+.++.++...+++.    .+  ++++.+..+|...++.++..|+.+|..++.++..
T Consensus       139 ~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~----v~--~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~  212 (618)
T 1w63_A          139 MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL----ME--MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD  212 (618)
T ss_dssp             HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG----GG--GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH----HH--HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence            34666888888999999999999999999998776643    22  6888899999999999999999999999876432


Q ss_pred             h-HHhhhcccHHHHHHHHhc--------------cCCHHHHHHHHHHHHHhcccchh-hhhh------------------
Q 044293           85 K-QSLASMETIYRLNWIIQS--------------SSSQETVKLASSLICSLAMLDKN-KARF------------------  130 (236)
Q Consensus        85 ~-~~i~~~g~i~~L~~lL~~--------------~~~~~~~~~a~~~L~~Ls~~~~~-~~~i------------------  130 (236)
                      . ..+  ...+|.++.+|+.              ..++-.+.....+|..++..+.. ...+                  
T Consensus       213 ~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~  290 (618)
T 1w63_A          213 MLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVG  290 (618)
T ss_dssp             HHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHH
T ss_pred             HHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchH
Confidence            1 112  2456666666653              11455555666666655543210 0000                  


Q ss_pred             -----------c--------ccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhh
Q 044293          131 -----------G--------VAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAED  191 (236)
Q Consensus       131 -----------~--------~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~  191 (236)
                                 .        ...+++.|..++.+.++.++..|+.+|..++....   .++ ....+.++..+.+.+ ..
T Consensus       291 ~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~-~~~~~~i~~~l~d~d-~~  365 (618)
T 1w63_A          291 NAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAV-QRHRSTIVDCLKDLD-VS  365 (618)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHH-GGGHHHHHHGGGSSC-HH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHH-HHHHHHHHHHccCCC-hh
Confidence                       0        01245667777776666777777777776664311   111 123445555555543 55


Q ss_pred             HHHHHHHHHHHHcCC
Q 044293          192 LAGTSLAVLNLLARF  206 (236)
Q Consensus       192 ~~~~a~~~L~~l~~~  206 (236)
                      ++..|+.+|..++..
T Consensus       366 Ir~~alelL~~l~~~  380 (618)
T 1w63_A          366 IKRRAMELSFALVNG  380 (618)
T ss_dssp             HHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHccc
Confidence            666666666666543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.41  E-value=8.8e-06  Score=75.43  Aligned_cols=190  Identities=10%  Similarity=0.078  Sum_probs=131.4

Q ss_pred             HhHHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhC
Q 044293            7 RETINNCVSRSQS-------DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLS   79 (236)
Q Consensus         7 ~~~i~~lv~~L~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~   79 (236)
                      ...++.++..+..       ++..++..+..+|..++....   ..+..  ..++.+...+++.+...++.++.++..++
T Consensus       323 ~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~--~l~~~l~~~l~~~~~~~r~~a~~~l~~i~  397 (861)
T 2bpt_A          323 KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG---NHILE--PVLEFVEQNITADNWRNREAAVMAFGSIM  397 (861)
T ss_dssp             HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc---HhHHH--HHHHHHHHHcCCCChhHHHHHHHHHHHHH
Confidence            5677888888864       234678888899988876421   12222  46777777788888899999999999998


Q ss_pred             CCCchhHHhh--hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhh---hhhcccCcHHHHHHhhcCCCcHHHHHH
Q 044293           80 LNPDLKQSLA--SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNK---ARFGVAGTVQVLVKAVSAPSNPAGHHL  154 (236)
Q Consensus        80 ~~~~~~~~i~--~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~---~~i~~~g~i~~Lv~lL~~~~~~~~~~a  154 (236)
                      ..... ..+.  -...++.++..+++. ++.++..++++|..++..-...   ... -...++.|++.+.+. +.++..+
T Consensus       398 ~~~~~-~~~~~~l~~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~~-~~v~~~a  473 (861)
T 2bpt_A          398 DGPDK-VQRTYYVHQALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQDH-PKVATNC  473 (861)
T ss_dssp             SSSCH-HHHHHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTSC-HHHHHHH
T ss_pred             cCCCH-HHHHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhccC-hHHHHHH
Confidence            65321 1121  135788888888877 8999999999999888653211   111 146788888888765 7889999


Q ss_pred             HHHHHHHhcCCC----ChHHHHHhCcHHHHHHHhcCCC-hhhHHHHHHHHHHHHcC
Q 044293          155 LSSLAELVQFHG----NSTLAVRAGAVSELIHLIGSTE-AEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       155 ~~aL~~L~~~~~----~~~~~~~~g~i~~lv~ll~~~~-~~~~~~~a~~~L~~l~~  205 (236)
                      +++|.+++..-.    ..-.-.-...++.++.++.+.+ +..++..++.++..++.
T Consensus       474 ~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~  529 (861)
T 2bpt_A          474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVE  529 (861)
T ss_dssp             HHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHH
Confidence            999999886421    1110011356788888887543 35788888888888774

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.41  E-value=1.4e-06  Score=84.31  Aligned_cols=211  Identities=11%  Similarity=0.034  Sum_probs=143.8

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChH-HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQ-YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK   85 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~   85 (236)
                      ...++.++..+.++|+++|..|...|.+....+.. ...... . ..++.|++.|.+.++++|..|+.+|.+++..-.. 
T Consensus         5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~-~-~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-   81 (1230)
T 1u6g_C            5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSE-R-KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-   81 (1230)
T ss_dssp             CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHH-H-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-
T ss_pred             HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHH-H-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-
Confidence            35688889999999999999999999887654210 000111 1 4688888999888999999999999998764322 


Q ss_pred             HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhh------hhhcccCcHHHHHHhhc-CCCcHHHHHHHHHH
Q 044293           86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNK------ARFGVAGTVQVLVKAVS-APSNPAGHHLLSSL  158 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~------~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL  158 (236)
                      ..  -...++.++..+.+. ++.+|..|+.+|..++..-...      ..-.-...+|.|++.+. ++++.++..|+.+|
T Consensus        82 ~~--~~~i~~~Ll~~l~d~-~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l  158 (1230)
T 1u6g_C           82 YQ--VETIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM  158 (1230)
T ss_dssp             HH--HHHHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence            11  134677788888776 6788888888888876543211      00112578899999998 47788999999999


Q ss_pred             HHHhcC-CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhC
Q 044293          159 AELVQF-HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKG  229 (236)
Q Consensus       159 ~~L~~~-~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~  229 (236)
                      ..++.. +..-.. .....++.++..+.+.+ +.+++.|+.+|..++.....  .+.  ..+++.++..+..
T Consensus       159 ~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~-~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~~L~~  224 (1230)
T 1u6g_C          159 ADMLSRQGGLLVN-FHPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSK  224 (1230)
T ss_dssp             HHHHHHTCSSCTT-THHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHH
T ss_pred             HHHHHHhHhHHHH-HHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHHHhcc
Confidence            999852 111110 11346677778887764 68999999999999864322  222  2257777776654

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.31  E-value=1.1e-05  Score=72.79  Aligned_cols=182  Identities=11%  Similarity=0.057  Sum_probs=130.1

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      ...-...++++.+++.+.++-+.-.+..++..+++...      -++..|.+-|+++++.++..|+.+|+++.. +    
T Consensus        69 ~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~------l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~----  137 (618)
T 1w63_A           69 HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL------LMTNCIKNDLNHSTQFVQGLALCTLGCMGS-S----  137 (618)
T ss_dssp             GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH------HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-H----
T ss_pred             cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH------HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-H----
Confidence            34455666667777777777777777777776543211      246667777888899999999999999873 1    


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG  166 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~  166 (236)
                      .+. ...++.+.+.|++. ++-+++.|+.++.++....  ...+  .+.++.+..+|.+.++.++..|+.+|..++....
T Consensus       138 ~~~-~~l~~~l~~~L~~~-~~~VRk~A~~al~~l~~~~--p~~v--~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~  211 (618)
T 1w63_A          138 EMC-RDLAGEVEKLLKTS-NSYLRKKAALCAVHVIRKV--PELM--EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP  211 (618)
T ss_dssp             HHH-HHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHC--GGGG--GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHH
T ss_pred             HHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHC--hHHH--HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhCh
Confidence            222 46788999999988 8999999999999998633  2222  3788888999999999999999999999987532


Q ss_pred             ChHHHHHhCcHHHHHHHhcC--------------CChhhHHHHHHHHHHHHcCC
Q 044293          167 NSTLAVRAGAVSELIHLIGS--------------TEAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       167 ~~~~~~~~g~i~~lv~ll~~--------------~~~~~~~~~a~~~L~~l~~~  206 (236)
                      .... .-...+|.++.+|.+              ..++-.+-..+.+|..++..
T Consensus       212 ~~~~-~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~  264 (618)
T 1w63_A          212 DMLA-HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN  264 (618)
T ss_dssp             HHHH-HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC
Confidence            2111 123678888887753              11245566777888887753

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.24  E-value=3.2e-05  Score=71.84  Aligned_cols=192  Identities=13%  Similarity=0.056  Sum_probs=134.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc-----
Q 044293            9 TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD-----   83 (236)
Q Consensus         9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-----   83 (236)
                      .++.+...+.+++++++..++++|..++...+..-...... ..++.++..+.+.++.++..++.++..++....     
T Consensus       218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~  296 (876)
T 1qgr_A          218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP-ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE  296 (876)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTT-THHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhh
Confidence            46666677777888999999999999887654332223333 688888888888888999999988888765320     


Q ss_pred             --------------hhHHh--hhcccHHHHHHHHhcc------CCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHH
Q 044293           84 --------------LKQSL--ASMETIYRLNWIIQSS------SSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVK  141 (236)
Q Consensus        84 --------------~~~~i--~~~g~i~~L~~lL~~~------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~  141 (236)
                                    ....+  .-...++.++..+...      ++..++..|+.+|..++....  ..+. ...++.+..
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~-~~~l~~l~~  373 (876)
T 1qgr_A          297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLPFIKE  373 (876)
T ss_dssp             HHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHH
T ss_pred             hccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhH-HHHHHHHHH
Confidence                          00011  0134677777777532      134688888888888876443  1222 356777778


Q ss_pred             hhcCCCcHHHHHHHHHHHHHhcCCC-C-hHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293          142 AVSAPSNPAGHHLLSSLAELVQFHG-N-STLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       142 lL~~~~~~~~~~a~~aL~~L~~~~~-~-~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~  206 (236)
                      .+.+.+..++..++.+|..++.... . ... .-...+|.++..+.+.+ +.++..|+.+|.+++..
T Consensus       374 ~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~  438 (876)
T 1qgr_A          374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             HTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHH
T ss_pred             HccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHh
Confidence            8888888999999999999987543 1 112 22468899999998874 78999999999998853

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.15  E-value=6e-05  Score=62.12  Aligned_cols=172  Identities=17%  Similarity=0.148  Sum_probs=125.7

Q ss_pred             HHhhccCCChHHHHHHHHHHHh-hCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhc-cc
Q 044293           56 LLGLSKSSSPIIRTLSLSILLN-LSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG-VA  133 (236)
Q Consensus        56 Lv~lL~~~~~~~~~~a~~~L~~-l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-~~  133 (236)
                      +++-|.+.+.+.++.++.-|.. ++.+.+--..+++.+|+..|+++...+ +.+.+.+++.++.+|....+...-+. ..
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~  201 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDGMLGVVAHS  201 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccccccchhCCH
Confidence            4444555666667778888887 666778899999999999999999988 89999999999999988876665555 57


Q ss_pred             CcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC-CChHHHHHh--------C--cHHHHHHHhc---CCChhhHHHHHHHH
Q 044293          134 GTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH-GNSTLAVRA--------G--AVSELIHLIG---STEAEDLAGTSLAV  199 (236)
Q Consensus       134 g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~~~~--------g--~i~~lv~ll~---~~~~~~~~~~a~~~  199 (236)
                      .+|..+..++.+....+.+.|+..|..++.+. .+...+.++        |  -.+.++.+|+   .. +.+++.+|+..
T Consensus       202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~-D~elq~~amtL  280 (339)
T 3dad_A          202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGA-DPELLVYTVTL  280 (339)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCC-CHHHHHHHHHH
Confidence            89999999999888888899999999999864 454443322        2  2678999997   34 47888888877


Q ss_pred             HHHHcC---ChhhHHHHH---hcCCcHHHHHHHhhC
Q 044293          200 LNLLAR---FDEGMIALT---KTDQIVSLMVDVLKG  229 (236)
Q Consensus       200 L~~l~~---~~~~~~~i~---~~g~~i~~lv~~l~~  229 (236)
                      +..+..   +.+.+..+.   +.-|+-..+.+.++.
T Consensus       281 IN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~  316 (339)
T 3dad_A          281 INKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT  316 (339)
T ss_dssp             HHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence            765442   233344433   334532344445654

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.13  E-value=0.00024  Score=61.35  Aligned_cols=220  Identities=14%  Similarity=0.076  Sum_probs=141.7

Q ss_pred             hHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCh---HHHHHHHhccCcHHHHHh-hccCCChHHHHHHHHHHHhhCCCC
Q 044293            8 ETINNCVSRSQ-SDSYEDQQKALQTLASITRVSP---QYRSLLAQTDGAISTLLG-LSKSSSPIIRTLSLSILLNLSLNP   82 (236)
Q Consensus         8 ~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~---~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~l~~~~   82 (236)
                      ..+..++.+|+ ....++..+.+..+..+...++   ...+.|.+.+.....+.. ++..+++-.+..+..++..++...
T Consensus        77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~  156 (480)
T 1ho8_A           77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  156 (480)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence            45677888886 5678889999998998888766   445666665343333443 344444455566666655554322


Q ss_pred             chhHHhhhcccHH--HHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhccc--CcHHHHHHhhcCC------------
Q 044293           83 DLKQSLASMETIY--RLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVA--GTVQVLVKAVSAP------------  146 (236)
Q Consensus        83 ~~~~~i~~~g~i~--~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~------------  146 (236)
                      ..-... -...+.  .+...|.+..+.+.+--++.+|..|...+.+|..+.+.  +.+|+++++++..            
T Consensus       157 ~~~~~~-l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~  235 (480)
T 1ho8_A          157 LHNVKL-VEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT  235 (480)
T ss_dssp             TCCHHH-HHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred             CccHhH-HHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccc
Confidence            110001 011223  45556655323555667889999999999999998763  3478887655421            


Q ss_pred             -----CcHHHHHHHHHHHHHhcCCCChHHHHHhCcH--HHHHHHhcCCChhhHHHHHHHHHHHHcCCh-----hhHH-HH
Q 044293          147 -----SNPAGHHLLSSLAELVQFHGNSTLAVRAGAV--SELIHLIGSTEAEDLAGTSLAVLNLLARFD-----EGMI-AL  213 (236)
Q Consensus       147 -----~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i--~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~-----~~~~-~i  213 (236)
                           +.+...+++-+++-|+.+++....+...+..  +.++++++....+.+...++.+|.|+...+     .... .+
T Consensus       236 ~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~  315 (480)
T 1ho8_A          236 NSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLL  315 (480)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHH
T ss_pred             cCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHH
Confidence                 2345789999999999998887888777754  678888887655778889999999998653     1122 23


Q ss_pred             HhcCCcHHHHHHHhhCC
Q 044293          214 TKTDQIVSLMVDVLKGR  230 (236)
Q Consensus       214 ~~~g~~i~~lv~~l~~~  230 (236)
                      +..+  .++++..|+.+
T Consensus       316 ~~~~--~l~~l~~L~~r  330 (480)
T 1ho8_A          316 LLGN--ALPTVQSLSER  330 (480)
T ss_dssp             HHHC--HHHHHHHHHSS
T ss_pred             HHcc--chHHHHHHhhC
Confidence            3333  36677777543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.07  E-value=4.9e-05  Score=60.70  Aligned_cols=156  Identities=12%  Similarity=0.095  Sum_probs=115.0

Q ss_pred             HHHhHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcC-C-hHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293            5 RVRETINNCVSRS-QSDSYEDQQKALQTLASITRV-S-PQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN   81 (236)
Q Consensus         5 ~~~~~i~~lv~~L-~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~   81 (236)
                      ++.+.+..|.+.+ ++.+..++..|+.+|..++.. . +........  -.+|.++..+....+.+++.+..++..++.+
T Consensus        57 ~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~  134 (249)
T 2qk1_A           57 NYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKY  134 (249)
T ss_dssp             CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            3456788888888 788999999999999999854 1 222212332  4799999999988888888888888776653


Q ss_pred             CchhHHhh--hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhh-hhhc---ccCcHHHHHHhhcCCCcHHHHHHH
Q 044293           82 PDLKQSLA--SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNK-ARFG---VAGTVQVLVKAVSAPSNPAGHHLL  155 (236)
Q Consensus        82 ~~~~~~i~--~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~---~~g~i~~Lv~lL~~~~~~~~~~a~  155 (236)
                      -+- ....  -...++.|...|++. ++.++..++.+|..+....... ..+.   ....+|.|.+.+.+.+..++..|.
T Consensus       135 ~~~-~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~  212 (249)
T 2qk1_A          135 YDP-LASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGF  212 (249)
T ss_dssp             SCT-TCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred             ccc-cccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            211 1111  124788889999988 8999999999999887654311 2221   258899999999999999999999


Q ss_pred             HHHHHHhcC
Q 044293          156 SSLAELVQF  164 (236)
Q Consensus       156 ~aL~~L~~~  164 (236)
                      .+|..++..
T Consensus       213 ~~l~~i~~~  221 (249)
T 2qk1_A          213 ESFAILIKI  221 (249)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888763

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.00  E-value=0.00032  Score=63.29  Aligned_cols=182  Identities=13%  Similarity=0.087  Sum_probs=123.3

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhcc----CC-------------ChHHHHH
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSK----SS-------------SPIIRTL   70 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~----~~-------------~~~~~~~   70 (236)
                      +.++.+.++|.+.++.++..|+.++..++.++++.   +.   ..+|.++..|.    .+             ++-.|-.
T Consensus       187 ~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~~---~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~  260 (621)
T 2vgl_A          187 DWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---FK---TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK  260 (621)
T ss_dssp             SCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---HT---THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred             hHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---HH---HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence            67889999999999999999999999998876542   11   34555554432    21             5778888


Q ss_pred             HHHHHHhhCCCCc--hhHHhhhcccHHHHHHHH---------hccCCH--HHHHHHHHHHHHhcccchhhhhhcccCcHH
Q 044293           71 SLSILLNLSLNPD--LKQSLASMETIYRLNWII---------QSSSSQ--ETVKLASSLICSLAMLDKNKARFGVAGTVQ  137 (236)
Q Consensus        71 a~~~L~~l~~~~~--~~~~i~~~g~i~~L~~lL---------~~~~~~--~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~  137 (236)
                      .+..+..++..++  .+..+.  +.++.++..+         ++. +.  .+.-.|+.++.++...++..     ..++.
T Consensus       261 il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~-n~~~aVl~ea~~~i~~l~~~~~~~-----~~~~~  332 (621)
T 2vgl_A          261 LLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHS-NAKNAVLFEAISLIIHHDSEPNLL-----VRACN  332 (621)
T ss_dssp             HHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHH-HHHHHHHHHHHHHHHHHCCCHHHH-----HHHHH
T ss_pred             HHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCccccccccc-chHHHHHHHHHHHHHhcCCcHHHH-----HHHHH
Confidence            8888888876432  233332  2344444332         111 22  56667888888886322211     24678


Q ss_pred             HHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhc-CCChhhHHHHHHHHHHHHcCC
Q 044293          138 VLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIG-STEAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       138 ~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~-~~~~~~~~~~a~~~L~~l~~~  206 (236)
                      .|..+|.+.++.++..++.+|..++...+....+  ....+.++..|. +.| ..++..++.+|..++..
T Consensus       333 ~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~--~~~~~~i~~~L~~d~d-~~Ir~~aL~lL~~l~~~  399 (621)
T 2vgl_A          333 QLGQFLQHRETNLRYLALESMCTLASSEFSHEAV--KTHIETVINALKTERD-VSVRQRAVDLLYAMCDR  399 (621)
T ss_dssp             HHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH--HTTHHHHHHHHTTCCC-HHHHHHHHHHHHHHCCH
T ss_pred             HHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH--HHHHHHHHHHhccCCC-HhHHHHHHHHHHHHcCh
Confidence            8999998888889999999999998765432222  356677888887 664 77888999999888754

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.95  E-value=0.00059  Score=58.90  Aligned_cols=190  Identities=14%  Similarity=0.222  Sum_probs=122.8

Q ss_pred             HHHHhcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHhccC-cHHHHHhhccC---------------C--ChHHHHHHHH
Q 044293           13 CVSRSQS-DSYEDQQKALQTLASITRVSPQYRSLLAQTDG-AISTLLGLSKS---------------S--SPIIRTLSLS   73 (236)
Q Consensus        13 lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g-~i~~Lv~lL~~---------------~--~~~~~~~a~~   73 (236)
                      +...|.. ++.+.+--++.+|..+... ++.|..|.+.+| .+|.++..++.               +  ...++-.++-
T Consensus       172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll  250 (480)
T 1ho8_A          172 LINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL  250 (480)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred             HHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence            4445544 3455566688889998886 788998886523 36777654331               1  2456788899


Q ss_pred             HHHhhCCCCchhHHhhhcccH--HHHHHHHhccCCHHHHHHHHHHHHHhcccc-----hh-hhhhccc------------
Q 044293           74 ILLNLSLNPDLKQSLASMETI--YRLNWIIQSSSSQETVKLASSLICSLAMLD-----KN-KARFGVA------------  133 (236)
Q Consensus        74 ~L~~l~~~~~~~~~i~~~g~i--~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-----~~-~~~i~~~------------  133 (236)
                      +++.++.+++....+...+..  +.|+++++....+.+.+-+..+|.||....     .. +..+...            
T Consensus       251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~r  330 (480)
T 1ho8_A          251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSER  330 (480)
T ss_dssp             HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSS
T ss_pred             HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhC
Confidence            999999999877777766543  677777876545778888888888887643     11 1111111            


Q ss_pred             ----------------------------------------------------------------CcHHHHHHhhcC----
Q 044293          134 ----------------------------------------------------------------GTVQVLVKAVSA----  145 (236)
Q Consensus       134 ----------------------------------------------------------------g~i~~Lv~lL~~----  145 (236)
                                                                                      ..+..|+++|.+    
T Consensus       331 k~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~  410 (480)
T 1ho8_A          331 KYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRN  410 (480)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccc
Confidence                                                                            223333344431    


Q ss_pred             ------CCcHHHHHHHHHHHHHhc-CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          146 ------PSNPAGHHLLSSLAELVQ-FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       146 ------~~~~~~~~a~~aL~~L~~-~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                            .++.+..-||.=++.++. +|++|..+-+.|+=..+++||.+.+ ++++..|+.++.-+.
T Consensus       411 ~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d-~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          411 GDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSD-SRVKYEALKATQAII  475 (480)
T ss_dssp             TCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSS-HHHHHHHHHHHHHHH
T ss_pred             cccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence                  112233344444566666 4566666667899999999999885 899999998887654

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.95  E-value=0.00099  Score=50.29  Aligned_cols=187  Identities=14%  Similarity=0.112  Sum_probs=129.5

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCCchh
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNPDLK   85 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~   85 (236)
                      ++.+..++..|.++=+.+|..|+..+...+...++..+      ..+..|+-+++. .....-...+.++..++.-   +
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~e------pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i---~  101 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE------PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE---K  101 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHH------HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH---C
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHH------HHHHHHHHHHhhcccCchHHHHHHHHhHHHHh---C
Confidence            45778899999888899999999999999988776544      345666666653 3444434456777776652   2


Q ss_pred             HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC
Q 044293           86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH  165 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~  165 (236)
                      +.++ .+.+|.+..-..-+ ++.++.+...+|-.++...  -..+  .+.+.-+..++.++|...+-.|+..+..+.   
T Consensus       102 Pe~v-~~vVp~lfanyrig-d~kikIn~~yaLeeIaran--P~l~--~~v~rdi~smltskd~~Dkl~aLnFi~alG---  172 (253)
T 2db0_A          102 PELV-KSMIPVLFANYRIG-DEKTKINVSYALEEIAKAN--PMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMG---  172 (253)
T ss_dssp             HHHH-HHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHC--HHHH--HHHHHHHHHHTSCSSHHHHHHHHHHHHTCC---
T ss_pred             HHHH-HhhHHHHHHHHhcC-CccceecHHHHHHHHHHhC--hHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHh---
Confidence            3333 34667777777778 8999999999999887733  2222  466788888998887655555555554443   


Q ss_pred             CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHH
Q 044293          166 GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIAL  213 (236)
Q Consensus       166 ~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i  213 (236)
                      +|.-.-+ .-.+|.+..||.+.+ .-++..++.+|.+++. +|.-|..+
T Consensus       173 en~~~yv-~PfLprL~aLL~D~d-eiVRaSaVEtL~~lA~~npklRkii  219 (253)
T 2db0_A          173 ENSFKYV-NPFLPRIINLLHDGD-EIVRASAVEALVHLATLNDKLRKVV  219 (253)
T ss_dssp             TTTHHHH-GGGHHHHHGGGGCSS-HHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             ccCcccc-CcchHHHHHHHcCcc-hhhhHHHHHHHHHHHHcCHHHHHHH
Confidence            3322221 345789999999885 6778899999999996 56655543

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.83  E-value=0.00028  Score=63.72  Aligned_cols=143  Identities=12%  Similarity=0.044  Sum_probs=108.6

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS   87 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~   87 (236)
                      ..-+..++.+.+++.+.++-+.-.+..++..+++.-   .   =++..+.+=|+++++.++..|+.+|+++..     ..
T Consensus        74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~---~---L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-----~e  142 (621)
T 2vgl_A           74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI---R---LINNAIKNDLASRNPTFMGLALHCIANVGS-----RE  142 (621)
T ss_dssp             SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH---H---HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-----HH
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH---H---HHHHHHHHhcCCCCHHHHHHHHHHhhccCC-----HH
Confidence            344566777778888888888888888887755432   1   135556666778899999999999999865     22


Q ss_pred             hhhcccHHHHHHHH--hccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC
Q 044293           88 LASMETIYRLNWII--QSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH  165 (236)
Q Consensus        88 i~~~g~i~~L~~lL--~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~  165 (236)
                      +. ...++.+.+.|  .+. ++-+++.|+.++.++....  ...+...+.++.+.++|.+.++.++..|+.++..++...
T Consensus       143 ~~-~~l~~~v~~~l~~~d~-~~~VRK~A~~al~kl~~~~--p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~  218 (621)
T 2vgl_A          143 MA-EAFAGEIPKILVAGDT-MDSVKQSAALCLLRLYRTS--PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN  218 (621)
T ss_dssp             HH-HHHTTHHHHHHHCSSS-CHHHHHHHHHHHHHHHHHC--GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred             HH-HHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhC--hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence            33 35778889999  666 8999999999999988743  233333589999999999889999999999999998743

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.80  E-value=0.00019  Score=60.19  Aligned_cols=178  Identities=11%  Similarity=0.031  Sum_probs=78.4

Q ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchh
Q 044293            6 VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLK   85 (236)
Q Consensus         6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~   85 (236)
                      +++..+.+.+.|.+.++-++..|+-+..++...+++.    ++  ++++.+-+++...++-++..|+.+|..+..++.  
T Consensus       137 ~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~----v~--~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--  208 (355)
T 3tjz_B          137 LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV----VK--RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--  208 (355)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH----HH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH----HH--HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--
Confidence            3444444555555555555555555555555444332    21  455555555555555555555555555544321  


Q ss_pred             HHhhhcccHHHHHHHHhccC--CHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293           86 QSLASMETIYRLNWIIQSSS--SQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~  163 (236)
                            ..+..++..+..+.  ++-.+..-...+..+...++..   .....++.+...|++.++.+.-.|++++..+..
T Consensus       209 ------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~  279 (355)
T 3tjz_B          209 ------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG  279 (355)
T ss_dssp             ------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred             ------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence                  02223333333221  2222222222222222211000   113455666666777778888999999988765


Q ss_pred             CCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293          164 FHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       164 ~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~  205 (236)
                      .+..   . ..-++..+..++.+++ +.++-.|+..|..+..
T Consensus       280 ~~~~---~-~~~a~~~L~~fLss~d-~niryvaLr~L~~l~~  316 (355)
T 3tjz_B          280 CSAK---E-LAPAVSVLQLFCSSPK-AALRYAAVRTLNKVAM  316 (355)
T ss_dssp             ------------CCCTHHHHHHSSS-SSSHHHHHHCC-----
T ss_pred             CCHH---H-HHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHH
Confidence            2221   1 1334566667777664 6788888888877764

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.79  E-value=0.00078  Score=54.32  Aligned_cols=196  Identities=14%  Similarity=0.053  Sum_probs=122.2

Q ss_pred             CCchHHHh--HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHH---HHHHhccCcHHHHHhhccCCChHHHHHHHHHH
Q 044293            1 MSAPRVRE--TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYR---SLLAQTDGAISTLLGLSKSSSPIIRTLSLSIL   75 (236)
Q Consensus         1 ~~~~~~~~--~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~---~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L   75 (236)
                      ||+++=.+  -+| +-+.|.+.+...|..|+..|..+....+...   ..+..-....+.+-..+...+..++..++.++
T Consensus         1 m~~~e~~d~sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l   79 (278)
T 4ffb_C            1 MSGEEEVDYTTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVAL   79 (278)
T ss_dssp             ----------CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             CCCcchhhhhcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            66655322  234 5688899999999999999988776532211   11111113455566777788889999999988


Q ss_pred             HhhCCCC---ch-hHH--hhhcccHHHHHHH-HhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCc
Q 044293           76 LNLSLNP---DL-KQS--LASMETIYRLNWI-IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSN  148 (236)
Q Consensus        76 ~~l~~~~---~~-~~~--i~~~g~i~~L~~l-L~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~  148 (236)
                      ..++..-   .. +..  ..-...++.|+.- +.+. ...++..+..++..+........     ..++.++..+.+.++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~-k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knp  153 (278)
T 4ffb_C           80 NSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSS-RATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLP  153 (278)
T ss_dssp             HHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCH
T ss_pred             HHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCH
Confidence            8765421   11 221  2234577777765 5666 67888888888877654332211     235677778889999


Q ss_pred             HHHHHHHHHHHHHhcC--CC--ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293          149 PAGHHLLSSLAELVQF--HG--NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       149 ~~~~~a~~aL~~L~~~--~~--~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~  205 (236)
                      .++..++..|..+...  ..  +.... -..+++.+..++.+.+ +.+++.|..++..+-.
T Consensus       154 kv~~~~l~~l~~~l~~fg~~~~~~k~~-l~~i~~~l~k~l~d~~-~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          154 KLIAAAANCVYELMAAFGLTNVNVQTF-LPELLKHVPQLAGHGD-RNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTCCHHHH-HHHHGGGHHHHHTCSS-HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCCcCCchhH-HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHH
Confidence            9999999888776542  11  11211 1235566778888885 8899999999887764

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.67  E-value=0.0023  Score=50.61  Aligned_cols=206  Identities=13%  Similarity=0.100  Sum_probs=136.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHh-------hccCCC--h---HHHHHHHHHHH
Q 044293            9 TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLG-------LSKSSS--P---IIRTLSLSILL   76 (236)
Q Consensus         9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-------lL~~~~--~---~~~~~a~~~L~   76 (236)
                      .|..++.-|.+++  .|+.|+..|..--...++....+-.+.|.+..|++       .++++.  .   .-.-+|+..+-
T Consensus         4 ~i~qli~~L~~p~--~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ   81 (268)
T 2fv2_A            4 KIYQWINELSSPE--TRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ   81 (268)
T ss_dssp             HHHHHHHHTSSTT--THHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCch--hHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence            3445555554443  57777666655444344555555555677776653       233321  1   12345666677


Q ss_pred             hhCCCCchhHHhhhcccHHHHHHHHhccC----CHHHHHHHHHHHHHhcccch--hhhhhcccCcHHHHHHhhcCCCcHH
Q 044293           77 NLSLNPDLKQSLASMETIYRLNWIIQSSS----SQETVKLASSLICSLAMLDK--NKARFGVAGTVQVLVKAVSAPSNPA  150 (236)
Q Consensus        77 ~l~~~~~~~~~i~~~g~i~~L~~lL~~~~----~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~  150 (236)
                      .+|.||+.|..+.+....--|--+|+...    .+-.+..+.+++..|...++  .-.-+.+.+.+|..++.+..++.-.
T Consensus        82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS  161 (268)
T 2fv2_A           82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS  161 (268)
T ss_dssp             HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred             HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence            88999999999998876655555666442    24577789999999987654  2233346899999999999999777


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHH--------hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhc
Q 044293          151 GHHLLSSLAELVQFHGNSTLAVR--------AGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKT  216 (236)
Q Consensus       151 ~~~a~~aL~~L~~~~~~~~~~~~--------~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~  216 (236)
                      +.-|.-.+..+-.++.+-..+++        ..++..++.-+.....+.+.++.+++-.-|+.++..|+.+.+.
T Consensus       162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~  235 (268)
T 2fv2_A          162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC  235 (268)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            77777666666555554433332        2445556665544445788999999999999999999988753

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.46  E-value=0.0025  Score=50.41  Aligned_cols=147  Identities=18%  Similarity=0.121  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCC-----hHHHHHHHHHHHhhCCCCch--hHHhhhcccHHH
Q 044293           24 DQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSS-----PIIRTLSLSILLNLSLNPDL--KQSLASMETIYR   96 (236)
Q Consensus        24 ~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~l~~~~~~--~~~i~~~g~i~~   96 (236)
                      ..+.|+..|+.++.+ ++.|..|.++ .+.-.|-.+|+..+     +-.|-.++++++.+.+.++.  -..+.+.+.+|.
T Consensus        72 RVcnaLaLlQcvAsh-petr~~Fl~a-~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl  149 (268)
T 2fv2_A           72 RVCNALALLQCVASH-PETRSAFLAA-HIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL  149 (268)
T ss_dssp             HHHHHHHHHHHHHHC-TTTHHHHHHT-TGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHcC-cchhhHHHHc-cchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence            446788888999975 7899999998 87777888887543     34577888999999876543  445558899999


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc--------cCcHHHHHH-hhcCCCcHHHHHHHHHHHHHhcCCCC
Q 044293           97 LNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV--------AGTVQVLVK-AVSAPSNPAGHHLLSSLAELVQFHGN  167 (236)
Q Consensus        97 L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--------~g~i~~Lv~-lL~~~~~~~~~~a~~aL~~L~~~~~~  167 (236)
                      .++.++.| ++-.+.-|+-.+.++-.++....-+-.        ...+..+|. +..+++++..++.+++-..|+.++..
T Consensus       150 CLrime~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra  228 (268)
T 2fv2_A          150 CLRIMESG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA  228 (268)
T ss_dssp             HHHHHHHS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             HHHHHhhc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence            99999999 788888888888887777655444432        233333333 33467889999999999999999988


Q ss_pred             hHHHHH
Q 044293          168 STLAVR  173 (236)
Q Consensus       168 ~~~~~~  173 (236)
                      |..+.+
T Consensus       229 r~aL~~  234 (268)
T 2fv2_A          229 REALRQ  234 (268)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888764

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.32  E-value=0.03  Score=52.51  Aligned_cols=98  Identities=15%  Similarity=0.116  Sum_probs=72.3

Q ss_pred             cHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhh-cCCCcHHHHHHHHHHHHHhcCCCChHHH
Q 044293           93 TIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAV-SAPSNPAGHHLLSSLAELVQFHGNSTLA  171 (236)
Q Consensus        93 ~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~L~~~~~~~~~~  171 (236)
                      .|+.|+..+.++.+.+++..|+.+|..+...+.        ..++.++.+| ++.++.++..+..+|+.++.+..+.+  
T Consensus       578 aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~--  647 (963)
T 4ady_A          578 AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS--  647 (963)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH--
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH--
Confidence            456666666655467888888888887655432        3577788755 56788899999999999998766533  


Q ss_pred             HHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293          172 VRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       172 ~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~  205 (236)
                          ++..|..+.++.+ ..++..|+-+|..+..
T Consensus       648 ----aid~L~~L~~D~d-~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          648 ----AIDVLDPLTKDPV-DFVRQAAMIALSMILI  676 (963)
T ss_dssp             ----HHHHHHHHHTCSS-HHHHHHHHHHHHHHST
T ss_pred             ----HHHHHHHHccCCC-HHHHHHHHHHHHHHhc
Confidence                3467777787774 7899999999998764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.29  E-value=0.019  Score=54.18  Aligned_cols=194  Identities=9%  Similarity=0.087  Sum_probs=131.9

Q ss_pred             CCchHHHhHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhC
Q 044293            1 MSAPRVRETINNCVSRSQSD-SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLS   79 (236)
Q Consensus         1 ~~~~~~~~~i~~lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~   79 (236)
                      |+++++...+|.|+..|++. .+..+..|+..+..++...++.-. . ..+..||.+-+.+-..-+++...|..++..+|
T Consensus       126 ~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~-~-~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~  203 (986)
T 2iw3_A          126 VNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA-L-RMPELIPVLSETMWDTKKEVKAAATAAMTKAT  203 (986)
T ss_dssp             SCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH-H-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHG
T ss_pred             CCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH-H-hccchhcchHhhcccCcHHHHHHHHHHHHHHH
Confidence            56788889999999999755 589999999999999976543211 1 11467888888887778899998989998888


Q ss_pred             CCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHH
Q 044293           80 LNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLA  159 (236)
Q Consensus        80 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~  159 (236)
                      ..=.|++.   ...||.|++.+.+.   +-.-.+...|..-+...+.-.... +=.+|.|.+-|...+...++.++-++-
T Consensus       204 ~~~~n~d~---~~~~~~~~~~~~~p---~~~~~~~~~l~~~tfv~~v~~~~l-~~~~p~l~r~l~~~~~~~~r~~~~~~~  276 (986)
T 2iw3_A          204 ETVDNKDI---ERFIPSLIQCIADP---TEVPETVHLLGATTFVAEVTPATL-SIMVPLLSRGLNERETGIKRKSAVIID  276 (986)
T ss_dssp             GGCCCTTT---GGGHHHHHHHHHCT---THHHHHHHHHTTCCCCSCCCHHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred             hcCCCcch---hhhHHHHHHHhcCh---hhhHHHHHHhhcCeeEeeecchhH-HHHHHHHHhhhccCcchhheeeEEEEc
Confidence            76666543   45899999999865   223344444444444332221111 234677778888888888899999999


Q ss_pred             HHhcCCCChHHHH--HhCcHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293          160 ELVQFHGNSTLAV--RAGAVSELIHLIGSTEAEDLAGTSLAVLNLL  203 (236)
Q Consensus       160 ~L~~~~~~~~~~~--~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l  203 (236)
                      |+|.-=++...+.  -...+|.+-.....-.+|+.++.|-+++.-|
T Consensus       277 n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          277 NMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL  322 (986)
T ss_dssp             HHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred             chhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            9998544433332  3567777777776544566665544444433

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.26  E-value=0.032  Score=42.21  Aligned_cols=105  Identities=10%  Similarity=0.113  Sum_probs=45.5

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      ++.||.+..-+.-+++..+.....+|...+..||..-.      +++.-+..++.+++..-+..|+..+..+.   +|..
T Consensus       106 ~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~------~v~rdi~smltskd~~Dkl~aLnFi~alG---en~~  176 (253)
T 2db0_A          106 KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA------SIVRDFMSMLSSKNREDKLTALNFIEAMG---ENSF  176 (253)
T ss_dssp             HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH------HHHHHHHHHTSCSSHHHHHHHHHHHHTCC---TTTH
T ss_pred             HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH------HHHHHHHHHhcCCChHHHHHHHHHHHHHh---ccCc
Confidence            34444444444444555555444445544444433211      33444445555444333333333333222   2211


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM  122 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~  122 (236)
                      .-+ ...+|.|..+|... |.-++.+|..+|.+++.
T Consensus       177 ~yv-~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~  210 (253)
T 2db0_A          177 KYV-NPFLPRIINLLHDG-DEIVRASAVEALVHLAT  210 (253)
T ss_dssp             HHH-GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHT
T ss_pred             ccc-CcchHHHHHHHcCc-chhhhHHHHHHHHHHHH
Confidence            111 23555555555554 45555555555555554

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.22  E-value=0.026  Score=45.19  Aligned_cols=175  Identities=15%  Similarity=0.157  Sum_probs=115.1

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhh----ccCCChHHHHHHHHHHHhhCCC---Cchh
Q 044293           13 CVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGL----SKSSSPIIRTLSLSILLNLSLN---PDLK   85 (236)
Q Consensus        13 lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~l----L~~~~~~~~~~a~~~L~~l~~~---~~~~   85 (236)
                      +...|.+.+...+.+|+..|.....+++  ...+..    +..++..    +...+..+...++.+|..+...   .+.+
T Consensus        51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~~----lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~  124 (266)
T 2of3_A           51 LMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLSN----SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP  124 (266)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHHT----HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHHH----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3445556777788889888887765433  232322    3333332    3356888877788777765221   1111


Q ss_pred             HHhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293           86 QSLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF  164 (236)
Q Consensus        86 ~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~  164 (236)
                      -.-. ..-.+|.|+.-+-.. .+.++..+-.++..++...      .-...++.++.-+.+.|.+.+..++..+..+-..
T Consensus       125 ~~~~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~  197 (266)
T 2of3_A          125 MSQEEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITN  197 (266)
T ss_dssp             CCHHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            1111 134889999988776 6778887777776665421      1134677888888999999999999998887653


Q ss_pred             CCChHHHHHhCcH---HHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293          165 HGNSTLAVRAGAV---SELIHLIGSTEAEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       165 ~~~~~~~~~~g~i---~~lv~ll~~~~~~~~~~~a~~~L~~l~~  205 (236)
                      ..-.    ...++   |.+..++.+.+ ..+++.|+.++..+-.
T Consensus       198 ~G~~----~~~~l~~~~~ia~ll~D~d-~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          198 AGIS----PLKSLSVEKTVAPFVGDKD-VNVRNAAINVLVACFK  236 (266)
T ss_dssp             HCSG----GGGGGCHHHHHGGGGGCSS-HHHHHHHHHHHHHHHH
T ss_pred             cCCC----ccccccchHHHHHHHcCCC-HHHHHHHHHHHHHHHH
Confidence            2222    24578   99999999985 7899999999886543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.07  E-value=0.054  Score=45.28  Aligned_cols=140  Identities=14%  Similarity=0.100  Sum_probs=107.9

Q ss_pred             CcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhh
Q 044293           51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARF  130 (236)
Q Consensus        51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i  130 (236)
                      ......++++.+++...++-..-.+.+++..++.-  +   =.+..|.+=++++ ++-++..|.++|+++...+-.    
T Consensus        68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~--i---Lv~Nsl~kDl~~~-N~~iR~lALRtL~~I~~~~m~----  137 (355)
T 3tjz_B           68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV--I---IVTSSLTKDMTGK-EDSYRGPAVRALCQITDSTML----  137 (355)
T ss_dssp             HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG--G---GGHHHHHHHHHSS-CHHHHHHHHHHHHHHCCTTTH----
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH--H---HHHHHHHhhcCCC-cHhHHHHHHHHHhcCCCHHHH----
Confidence            45677788999999999999888998988874432  2   2566777888888 899999999999999775521    


Q ss_pred             cccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh
Q 044293          131 GVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD  207 (236)
Q Consensus       131 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~  207 (236)
                        ....+.+.+.|.+.++.+++.|+-+...|....  .+. + .+.++.+-+++.+.+ +-++-+|+.+|..+..++
T Consensus       138 --~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~-v-~~~~~~l~~ll~d~n-~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          138 --QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDV-V-KRWVNEAQEAASSDN-IMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             --HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHH-H-HTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTC
T ss_pred             --HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHH-H-HHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHhhc
Confidence              245677778888899999999999988887532  222 2 368888999998874 677789999999998744

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.06  E-value=0.038  Score=45.51  Aligned_cols=215  Identities=15%  Similarity=0.109  Sum_probs=144.2

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChH----HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQ----YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD   83 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~----~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~   83 (236)
                      +.+..|+..|..-+-+.+..++....++.....+    .-+.+...+.++..|+.--.  ++++--.+-..|..+..++.
T Consensus        78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRecir~e~  155 (341)
T 1upk_A           78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIRHEP  155 (341)
T ss_dssp             SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHTSHH
T ss_pred             CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHHHhHH
Confidence            3445555555555666666666666665554322    11223323333333333322  33444456667888888888


Q ss_pred             hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHh-cccchhhhhhcc---cCcHHHHHHhhcCCCcHHHHHHHHHHH
Q 044293           84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSL-AMLDKNKARFGV---AGTVQVLVKAVSAPSNPAGHHLLSSLA  159 (236)
Q Consensus        84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~L-s~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~aL~  159 (236)
                      ....+...+.+..+.+.++.+ +-++...|..++..| +.+......+..   .-++...-++|.++|.-+++.++..|+
T Consensus       156 la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg  234 (341)
T 1upk_A          156 LAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG  234 (341)
T ss_dssp             HHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence            877777788889999999988 899999999999965 444433334332   356777778999999999999999999


Q ss_pred             HHhcCCCChHHHHHh----CcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh----hHHHHHhcCCcHHHHHHHhhC
Q 044293          160 ELVQFHGNSTLAVRA----GAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE----GMIALTKTDQIVSLMVDVLKG  229 (236)
Q Consensus       160 ~L~~~~~~~~~~~~~----g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~----~~~~i~~~g~~i~~lv~~l~~  229 (236)
                      .+-..+.|...|.+.    .-+..++.+|++.+ ..++-.|.-++.....+|.    ....+.. .  =..|++.+.+
T Consensus       235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~s-k~Iq~EAFhVFKvFVANP~K~~~I~~IL~~-N--r~kLl~fl~~  308 (341)
T 1upk_A          235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS-RNIQFEAFHVFKVFVANPNKTQPILDILLK-N--QAKLIEFLSK  308 (341)
T ss_dssp             HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHCSSCCHHHHHHHHH-T--HHHHHHHHHH
T ss_pred             HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCch-hchhhhhhhheeeeeeCCCCChHHHHHHHH-H--HHHHHHHHHh
Confidence            999999998777653    45788999999884 7788888888887665542    2333333 2  2566666654

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=96.99  E-value=0.09  Score=44.41  Aligned_cols=172  Identities=14%  Similarity=0.112  Sum_probs=109.6

Q ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC-----------CChHHHHHHHHHHHhh
Q 044293           12 NCVSRSQSD-SYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS-----------SSPIIRTLSLSILLNL   78 (236)
Q Consensus        12 ~lv~~L~~~-~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~l   78 (236)
                      ..++.|+++ ..+...+.+..|+.-... ....-+.|. . +|+..|+..|..           .+...+..++.+|..+
T Consensus        70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~-~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal  147 (383)
T 3eg5_B           70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-A-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF  147 (383)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-H-HHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-H-ccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            345555543 233233455556543333 345557776 5 789999999852           1346677888999999


Q ss_pred             CCCCchhHHhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch--h-hhhh----------cccCcHHHHHHhhc
Q 044293           79 SLNPDLKQSLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK--N-KARF----------GVAGTVQVLVKAVS  144 (236)
Q Consensus        79 ~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~g~i~~Lv~lL~  144 (236)
                      -.+..+...+. ....+..|...|.+. ++.++..++..|..+|..++  + -..+          .+..-...++..+.
T Consensus       148 mN~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          148 MNNKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             TSSHHHHHHHHTCSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             hcchhhHHHHHcChHHHHHHHHHhCCC-chHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            88888866666 568999999999888 89999999999988887653  2 2221          23456788888888


Q ss_pred             CC-CcHHHHHHHHHHHHHhcCCCC-------hHHHHHhCcHHHHHHHhcCC
Q 044293          145 AP-SNPAGHHLLSSLAELVQFHGN-------STLAVRAGAVSELIHLIGST  187 (236)
Q Consensus       145 ~~-~~~~~~~a~~aL~~L~~~~~~-------~~~~~~~g~i~~lv~ll~~~  187 (236)
                      +. +.+....++..+-.+..+++.       |..+...|..+.+-. |+..
T Consensus       227 ~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~  276 (383)
T 3eg5_B          227 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREI  276 (383)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTS
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcC
Confidence            74 444445545445555555543       233445566555544 5543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.93  E-value=0.029  Score=45.89  Aligned_cols=174  Identities=14%  Similarity=0.119  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHhccC---cHHHHHhhccC-CChHHHHHHHHHHHhhCCCCchhHHhhhc--ccHHHH
Q 044293           24 DQQKALQTLASITRVSPQYRSLLAQTDG---AISTLLGLSKS-SSPIIRTLSLSILLNLSLNPDLKQSLASM--ETIYRL   97 (236)
Q Consensus        24 ~~~~a~~~L~~l~~~~~~~~~~i~~~~g---~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~i~~~--g~i~~L   97 (236)
                      .+.-++..++.+..+ +.....+.+.++   .+..+...+.+ ..+..+-.++++++|+..++.++..+...  ..++.+
T Consensus       118 ~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~  196 (304)
T 3ebb_A          118 IVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHA  196 (304)
T ss_dssp             TCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence            344566666666654 555555554312   22233344433 34566778999999999999998877642  344444


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcC-CCcHHHHHHHHHHHHHhcCCCChHHHHH-h
Q 044293           98 NWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSA-PSNPAGHHLLSSLAELVQFHGNSTLAVR-A  174 (236)
Q Consensus        98 ~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~~~-~  174 (236)
                      ...+... +..++..+++++.|++..........+ ...+..+..++.. .+.+....++.+|++|...+.....+.+ .
T Consensus       197 ~~~~~~~-nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l  275 (304)
T 3ebb_A          197 IELKSGS-NKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSL  275 (304)
T ss_dssp             HGGGSSC-CHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHhcCC-ChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHc
Confidence            4444444 788999999999999875321111111 2244444555543 4667888999999999976555555555 4


Q ss_pred             CcHHHHHHHhcCCChhhHHHHHHHHH
Q 044293          175 GAVSELIHLIGSTEAEDLAGTSLAVL  200 (236)
Q Consensus       175 g~i~~lv~ll~~~~~~~~~~~a~~~L  200 (236)
                      |+-..+-.+...+..+.+ ..|++.+
T Consensus       276 ~~~~~v~~~~~~~~~~kv-~~~~~~~  300 (304)
T 3ebb_A          276 GVDSQIKKYSSVSEPAKV-SECCRFI  300 (304)
T ss_dssp             THHHHGGGGGGCCSSHHH-HHHHHHH
T ss_pred             CHHHHHHHHHhCCCchhH-HHHHHHH
Confidence            555544444444332333 4444443

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=96.85  E-value=0.17  Score=47.72  Aligned_cols=199  Identities=9%  Similarity=0.125  Sum_probs=113.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCh-------------HHHHHHHhccCcHHHHHhhccCC---ChHHHHHHHHHHHhhCCCC
Q 044293           19 SDSYEDQQKALQTLASITRVSP-------------QYRSLLAQTDGAISTLLGLSKSS---SPIIRTLSLSILLNLSLNP   82 (236)
Q Consensus        19 ~~~~~~~~~a~~~L~~l~~~~~-------------~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~l~~~~   82 (236)
                      +++...+..|+.++..++....             +....+.+      .++..|+++   ++.+|..+++++..++..-
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~------~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~  489 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTK------EIAPDLTSNNIPHIILRVDAIKYIYTFRNQL  489 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHH------HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHH------HhHHHhcCCCCCCceehHHHHHHHHHHHhhC
Confidence            4566677888888888875311             11111111      122233444   7899999999999987642


Q ss_pred             chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch---------hhhhhcc--cCcHHHHHHhhcCCC--c-
Q 044293           83 DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK---------NKARFGV--AGTVQVLVKAVSAPS--N-  148 (236)
Q Consensus        83 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~---------~~~~i~~--~g~i~~Lv~lL~~~~--~-  148 (236)
                       .+. . -...++.++..|.+. +..++..|+.+|.+++...+         .+..+..  ...++.|+.++...+  + 
T Consensus       490 -~~~-~-l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~  565 (960)
T 1wa5_C          490 -TKA-Q-LIELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPE  565 (960)
T ss_dssp             -CHH-H-HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHH
T ss_pred             -CHH-H-HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCC
Confidence             111 1 245678888888876 78999999999999987422         2344432  456666777777641  1 


Q ss_pred             --HHHHHHHHHHHHHhcC-CCChHHHHHhCcHHHHHHHhc----CCChhhHHHHHHHHHHHHcC--ChhhHHHHHhcCCc
Q 044293          149 --PAGHHLLSSLAELVQF-HGNSTLAVRAGAVSELIHLIG----STEAEDLAGTSLAVLNLLAR--FDEGMIALTKTDQI  219 (236)
Q Consensus       149 --~~~~~a~~aL~~L~~~-~~~~~~~~~~g~i~~lv~ll~----~~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~g~~  219 (236)
                        .....+..+|..++.. ++...... ...++.++..+.    +.+++.....++.++..++.  +++....+.+.  +
T Consensus       566 ~~~~~e~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~--~  642 (960)
T 1wa5_C          566 KLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDS--M  642 (960)
T ss_dssp             HHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHH--H
T ss_pred             cccccHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHH--H
Confidence              1234566666655431 22211111 124455555443    33345566667778877764  34444544442  4


Q ss_pred             HHHHHHHhhCC
Q 044293          220 VSLMVDVLKGR  230 (236)
Q Consensus       220 i~~lv~~l~~~  230 (236)
                      .|.+..+|+++
T Consensus       643 ~p~~~~iL~~~  653 (960)
T 1wa5_C          643 MPTFLTVFSED  653 (960)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhh
Confidence            56666666543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.69  E-value=0.052  Score=51.28  Aligned_cols=204  Identities=12%  Similarity=0.094  Sum_probs=132.8

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCC-hHHHHHHHHHHHhhCCCCchhH
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSS-PIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      +.++.+++.+.+....++..|-.++..+...-  +-+++ .  ..+|.|+..|.+.. =..+..|+.++..++...  ..
T Consensus        95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~--~~~a~-~--~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~  167 (986)
T 2iw3_A           95 QLVPAICTNAGNKDKEIQSVASETLISIVNAV--NPVAI-K--ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KD  167 (986)
T ss_dssp             TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS--CGGGH-H--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HH
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhC--CHHHH-H--HHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HH
Confidence            45677777777777888887776766665432  12223 2  57999999886553 356777888888887644  33


Q ss_pred             Hhh--hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293           87 SLA--SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF  164 (236)
Q Consensus        87 ~i~--~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~  164 (236)
                      .+.  =...||.+...+... .++++..|..++..+|..-+|+..   ...||.|++-+.+++.  ...++..|..-+.-
T Consensus       168 ~~~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv  241 (986)
T 2iw3_A          168 QVALRMPELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFV  241 (986)
T ss_dssp             HHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCC
T ss_pred             HHHHhccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeE
Confidence            333  357899999998877 799999999999999988888876   6889999999998842  34444444332221


Q ss_pred             CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC---hhhHHHHHhcCCcHHHHHHHhh
Q 044293          165 HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF---DEGMIALTKTDQIVSLMVDVLK  228 (236)
Q Consensus       165 ~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~---~~~~~~i~~~g~~i~~lv~~l~  228 (236)
                      .+.-.- .-+=.+|.|..=|+..+ ..+..+++-+..|||.-   |..-..|.-  -+.|.+-+...
T Consensus       242 ~~v~~~-~l~~~~p~l~r~l~~~~-~~~~r~~~~~~~n~~~lv~~~~~~~~f~~--~l~p~~~~~~~  304 (986)
T 2iw3_A          242 AEVTPA-TLSIMVPLLSRGLNERE-TGIKRKSAVIIDNMCKLVEDPQVIAPFLG--KLLPGLKSNFA  304 (986)
T ss_dssp             SCCCHH-HHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHTTCCCHHHHHHHHT--TTHHHHHHHTT
T ss_pred             eeecch-hHHHHHHHHHhhhccCc-chhheeeEEEEcchhhhcCCHHHHhhhhh--hhhhHHHHHhh
Confidence            222111 01123566666666553 55668888899999863   444444442  24455544443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.59  E-value=0.24  Score=42.79  Aligned_cols=174  Identities=16%  Similarity=0.160  Sum_probs=110.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHH
Q 044293           19 SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLN   98 (236)
Q Consensus        19 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~   98 (236)
                      .+++...+-|+..|..+..+=|+..+      -+|..+++|....+..+|..|...|..+|.+ ++...     ....|+
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~~------~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~  106 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELAD------SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILT  106 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGHH------HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHH
Confidence            45677777788888888877666533      4688888999999999999999999999988 44333     456789


Q ss_pred             HHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc--CCCChHHHHHhCc
Q 044293           99 WIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ--FHGNSTLAVRAGA  176 (236)
Q Consensus        99 ~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~--~~~~~~~~~~~g~  176 (236)
                      ++|++. ++.-....-.+|..+-..+.       .+.+..|...+.+++..+++.++..|..--.  .++.-..-++.=+
T Consensus       107 QlLqtd-d~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i  178 (507)
T 3u0r_A          107 QLLQTD-DSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI  178 (507)
T ss_dssp             HHTTCC-CHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred             HHHhcc-chHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence            999987 55555555555554443331       3556777777777777888888888854332  2222223334445


Q ss_pred             HHHHHHHhcCCChhhHHHHHHHHHHHHc--CChhhHHHH
Q 044293          177 VSELIHLIGSTEAEDLAGTSLAVLNLLA--RFDEGMIAL  213 (236)
Q Consensus       177 i~~lv~ll~~~~~~~~~~~a~~~L~~l~--~~~~~~~~i  213 (236)
                      +..+-++|.+-+..+ ....+.+|..+-  .++.++.++
T Consensus       179 ~~~ikK~L~DVT~~E-F~L~m~lL~~lkl~~t~~g~qeL  216 (507)
T 3u0r_A          179 LTESKKVLEDVTGEE-FVLFMKILSGLKSLQTVSGRQQL  216 (507)
T ss_dssp             HHHHHHHTTSCCHHH-HHHHHHHHHTSGGGSSHHHHHHH
T ss_pred             HHHHHHHhccccHHH-HHHHHHHHHhcccccCchHHHHH
Confidence            555666665543222 255666665432  344444443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.59  E-value=0.069  Score=41.83  Aligned_cols=121  Identities=12%  Similarity=0.048  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC--C-hHHHHHh--------
Q 044293          107 QETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG--N-STLAVRA--------  174 (236)
Q Consensus       107 ~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~--~-~~~~~~~--------  174 (236)
                      .+....+..+|..+.........+.. .+++..|...|.++++.++..++..|..+|..++  + ...+.++        
T Consensus        68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~  147 (233)
T 2f31_A           68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD  147 (233)
T ss_dssp             HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhC
Confidence            45666788888888877765655554 7899999999999999999999999999998654  6 5544332        


Q ss_pred             --CcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh-------hHHHHHhcCCcHHHHHHHhhC
Q 044293          175 --GAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE-------GMIALTKTDQIVSLMVDVLKG  229 (236)
Q Consensus       175 --g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~-------~~~~i~~~g~~i~~lv~~l~~  229 (236)
                        .-+..+++.+...+..+.+..++..+..+...++       -|.++...|  +..+++-++.
T Consensus       148 e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G--l~~il~~l~~  209 (233)
T 2f31_A          148 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG--LHQVLQELRE  209 (233)
T ss_dssp             TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred             CcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC--hHHHHHHHhc
Confidence              2456688877654445566666666665655442       366677775  5777776664

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.58  E-value=0.27  Score=46.21  Aligned_cols=168  Identities=12%  Similarity=0.011  Sum_probs=94.0

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhc-cCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS-KSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      +.++.|...+.+++...+..|+.+|......+ .+..       ++..|+..+ ...+..+++.++..|..+....    
T Consensus       472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~~-------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~----  539 (963)
T 4ady_A          472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKPE-------AIHDMFTYSQETQHGNITRGLAVGLALINYGR----  539 (963)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCHH-------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC----
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCHH-------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC----
Confidence            34556666666555544555555555443221 1211       223333322 2345566666666766654432    


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcC-CCcHHHHHHHHHHHHHhcCC
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSA-PSNPAGHHLLSSLAELVQFH  165 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~  165 (236)
                          ...++.++..|....++-++..++.++.--.....|      ...|+.|+..+.+ .++.+++.|+.+|+.+....
T Consensus       540 ----~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~  609 (963)
T 4ady_A          540 ----QELADDLITKMLASDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD  609 (963)
T ss_dssp             ----GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred             ----hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence                345667777777654666666666665422222222      3446767766654 46678889999998877654


Q ss_pred             CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293          166 GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       166 ~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~  205 (236)
                      +        ..++.++.+|....++.++..+.-+|..++.
T Consensus       610 ~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~a  641 (963)
T 4ady_A          610 Y--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACA  641 (963)
T ss_dssp             C--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred             H--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence            3        3456666655443346677777777777653

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.49  E-value=0.11  Score=42.40  Aligned_cols=170  Identities=12%  Similarity=0.077  Sum_probs=104.1

Q ss_pred             cHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHH----HHHhccCCHHHHHHHHHHHHHhcccchhh
Q 044293           52 AISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLN----WIIQSSSSQETVKLASSLICSLAMLDKNK  127 (236)
Q Consensus        52 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~----~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~  127 (236)
                      .+..+..+++++. +.+--++.++.-+..++..-..+.+.+.-..++    ..+.+...+..+-.++++++|+-..+..+
T Consensus       104 ~l~~l~kil~WP~-~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~  182 (304)
T 3ebb_A          104 QLQILWKAINCPE-DIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ  182 (304)
T ss_dssp             HHHHHHHHHTSCT-TTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred             HHHHHHHHHcCCH-HhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence            4566667765543 445567777777777777655555332222333    33332225667888999999999888877


Q ss_pred             hhhcc--cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC--C-CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHH
Q 044293          128 ARFGV--AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF--H-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNL  202 (236)
Q Consensus       128 ~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~--~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~  202 (236)
                      ..+..  ...++.+...+.+.+..++..++..+.|++..  . .....  ..-++..+..++....+.+..-.++-+|.+
T Consensus       183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l~~il~~~~d~EalyR~LvALGt  260 (304)
T 3ebb_A          183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLISTILEVVQDLEATFRLLVALGT  260 (304)
T ss_dssp             HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            77664  34455555555556777888888888999873  1 12111  112445555666554456788899999999


Q ss_pred             HcCChhhHHHHHhcCCcHHHHHH
Q 044293          203 LARFDEGMIALTKTDQIVSLMVD  225 (236)
Q Consensus       203 l~~~~~~~~~i~~~g~~i~~lv~  225 (236)
                      |...+....++.+.=+ +...++
T Consensus       261 L~~~~~~~~~lak~l~-~~~~v~  282 (304)
T 3ebb_A          261 LISDDSNAVQLAKSLG-VDSQIK  282 (304)
T ss_dssp             HHTTCHHHHHHHHHTT-HHHHGG
T ss_pred             HHhCChhHHHHHHHcC-HHHHHH
Confidence            9876544444444334 344444

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=96.38  E-value=0.2  Score=47.30  Aligned_cols=186  Identities=7%  Similarity=0.102  Sum_probs=112.0

Q ss_pred             HHHHHhcCC---CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc-----
Q 044293           12 NCVSRSQSD---SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD-----   83 (236)
Q Consensus        12 ~lv~~L~~~---~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-----   83 (236)
                      .++..|+++   ++-+|..|++++..++..-  ..+ ...  .+++.++..|.++++.++..|+.+|.+++...+     
T Consensus       459 ~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~-~l~--~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~  533 (960)
T 1wa5_C          459 EIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKA-QLI--ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSP  533 (960)
T ss_dssp             HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHH-HHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSC
T ss_pred             HhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHH-HHH--HHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccc
Confidence            345556666   8889999999999998752  122 232  578999999988889999999999999887522     


Q ss_pred             ----hhHHhh--hcccHHHHHHHHhccC-C-HH--HHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhc----CC-C
Q 044293           84 ----LKQSLA--SMETIYRLNWIIQSSS-S-QE--TVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVS----AP-S  147 (236)
Q Consensus        84 ----~~~~i~--~~g~i~~L~~lL~~~~-~-~~--~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~----~~-~  147 (236)
                          .+..+.  -...++.|..+++... . ..  ....+..+|..+...- +.-.... ...++.|+..+.    ++ +
T Consensus       534 ~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~~~~~~~  612 (960)
T 1wa5_C          534 AFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSN  612 (960)
T ss_dssp             CBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCC
T ss_pred             cccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhCCCC
Confidence                234443  2457777777777630 0 11  2234555555443321 1111111 234555555553    22 3


Q ss_pred             cHHHHHHHHHHHHHhcC-CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          148 NPAGHHLLSSLAELVQF-HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       148 ~~~~~~a~~aL~~L~~~-~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                      +.....++.+|..+... ......-.....+|.+...|.... .+..+.+..++..+.
T Consensus       613 ~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~-~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          613 PRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDI-QEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTC-TTTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhh-HhhHHHHHHHHHHHH
Confidence            34556678888888765 222223345567888888887642 345566666665554

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.30  E-value=0.28  Score=38.33  Aligned_cols=177  Identities=15%  Similarity=0.135  Sum_probs=107.6

Q ss_pred             HHHhcCC-CHHHHHHHHHHHHHH-hcCChHHHHHHHhccCcHHHHHhhccC----C-------ChHHHHHHHHHHHhhCC
Q 044293           14 VSRSQSD-SYEDQQKALQTLASI-TRVSPQYRSLLAQTDGAISTLLGLSKS----S-------SPIIRTLSLSILLNLSL   80 (236)
Q Consensus        14 v~~L~~~-~~~~~~~a~~~L~~l-~~~~~~~~~~i~~~~g~i~~Lv~lL~~----~-------~~~~~~~a~~~L~~l~~   80 (236)
                      ++.|++. .++...+.+..|+.. -.+...+-+.| .. +|+..|+..|..    +       +...+..++.+|..+..
T Consensus         6 i~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~-~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn   83 (233)
T 2f31_A            6 IQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GA-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   83 (233)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HH-HHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HH-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence            4445433 333223344555433 33334566777 55 889999988753    1       23557788899999988


Q ss_pred             CCchhHHhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch--h-hhhh----------cccCcHHHHHHhhcCC
Q 044293           81 NPDLKQSLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK--N-KARF----------GVAGTVQVLVKAVSAP  146 (236)
Q Consensus        81 ~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~g~i~~Lv~lL~~~  146 (236)
                      +..+...+. ..+.+..+...|.+. ++.++..++..|..+|..++  + -..+          .+..-..++++.+.+.
T Consensus        84 ~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~  162 (233)
T 2f31_A           84 NKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  162 (233)
T ss_dssp             SHHHHHHHHTSSSHHHHHHTTCCTT-SHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred             ChHHHHHHHcCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence            888866666 567899999999877 89999999988888887654  2 2221          2344567788888754


Q ss_pred             C-cHHHHHHHHHHHHHhcCCCC-------hHHHHHhCcHHHHHHHhcCCChhhHHH
Q 044293          147 S-NPAGHHLLSSLAELVQFHGN-------STLAVRAGAVSELIHLIGSTEAEDLAG  194 (236)
Q Consensus       147 ~-~~~~~~a~~aL~~L~~~~~~-------~~~~~~~g~i~~lv~ll~~~~~~~~~~  194 (236)
                      + .+.+..++..+-.+..+++.       |..+...|..+.+ +-++..+++++..
T Consensus       163 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il-~~l~~~~~~~L~~  217 (233)
T 2f31_A          163 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELREIENEDMKV  217 (233)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHH-HHHHHCCCHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhccCCHHHHH
Confidence            3 34444444444555555544       3334445555444 4444433344433

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.067  Score=42.78  Aligned_cols=146  Identities=11%  Similarity=0.027  Sum_probs=95.1

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCh------HHHHHHHhccCcHHHHHhh-ccCCChHHHHHHHHHHHhhCCCCc
Q 044293           11 NNCVSRSQSDSYEDQQKALQTLASITRVSP------QYRSLLAQTDGAISTLLGL-SKSSSPIIRTLSLSILLNLSLNPD   83 (236)
Q Consensus        11 ~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~------~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~~   83 (236)
                      +.+...+++.+..++..++.++..++....      .....+..  .++|.|+.- |.+..+.++..+..++..++....
T Consensus        58 ~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~--~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~  135 (278)
T 4ffb_C           58 TLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS--TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT  135 (278)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH--HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH--HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC
Confidence            345566678888999999999988875311      11112222  578888865 777788888888888776543322


Q ss_pred             hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhh-h--cccCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293           84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKAR-F--GVAGTVQVLVKAVSAPSNPAGHHLLSSLAE  160 (236)
Q Consensus        84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~-i--~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~  160 (236)
                      ....     .++.+...+++. ++.++..++..|..+...-..+.. .  .-..+++.+.+++.+.++.++..|..++..
T Consensus       136 ~~~~-----~~e~l~~~l~~K-npkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~  209 (278)
T 4ffb_C          136 SITQ-----SVELVIPFFEKK-LPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVE  209 (278)
T ss_dssp             SSHH-----HHHHHGGGGGCS-CHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             cHHH-----HHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            2111     234555566666 899999888888876543221111 0  002355667788888999999999999887


Q ss_pred             HhcC
Q 044293          161 LVQF  164 (236)
Q Consensus       161 L~~~  164 (236)
                      +-.+
T Consensus       210 ly~~  213 (278)
T 4ffb_C          210 IYKV  213 (278)
T ss_dssp             HHTC
T ss_pred             HHHH
Confidence            7654

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=96.09  E-value=0.2  Score=42.25  Aligned_cols=150  Identities=13%  Similarity=0.059  Sum_probs=102.5

Q ss_pred             hCCCCch-hHHhhhcccHHHHHHHHhcc----------CCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcC
Q 044293           78 LSLNPDL-KQSLASMETIYRLNWIIQSS----------SSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSA  145 (236)
Q Consensus        78 l~~~~~~-~~~i~~~g~i~~L~~lL~~~----------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~  145 (236)
                      |-..+.. ...+. .+|+..|+.+|..-          .+.+....+..+|..+..+......+.. ..++..|+..|.+
T Consensus        95 Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s  173 (383)
T 3eg5_B           95 LTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP  173 (383)
T ss_dssp             HHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCT
T ss_pred             HhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCC
Confidence            3344433 45565 77899999998631          1346667788889888877765555554 8899999999999


Q ss_pred             CCcHHHHHHHHHHHHHhcCCC--C-hHHHHH----------hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh---h-
Q 044293          146 PSNPAGHHLLSSLAELVQFHG--N-STLAVR----------AGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD---E-  208 (236)
Q Consensus       146 ~~~~~~~~a~~aL~~L~~~~~--~-~~~~~~----------~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~---~-  208 (236)
                      .++.++..++..|..+|..++  + ...+.+          ..-+..+++.|......+....++..+..+...+   + 
T Consensus       174 ~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~  253 (383)
T 3eg5_B          174 AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF  253 (383)
T ss_dssp             TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred             CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH
Confidence            999999999999999998654  4 444432          2346778888876434566666666666565543   2 


Q ss_pred             ---hHHHHHhcCCcHHHHHHHhhCC
Q 044293          209 ---GMIALTKTDQIVSLMVDVLKGR  230 (236)
Q Consensus       209 ---~~~~i~~~g~~i~~lv~~l~~~  230 (236)
                         -|.++...|  +..++.-++..
T Consensus       254 R~~lR~ef~~~G--l~~il~~lr~~  276 (383)
T 3eg5_B          254 RVHIRSELMRLG--LHQVLQELREI  276 (383)
T ss_dssp             HHHHHHHHHHTT--HHHHHHHHTTS
T ss_pred             HHHHHHHHHHCC--hHHHHHHHhcC
Confidence               355666775  46666666653

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=95.79  E-value=0.76  Score=43.08  Aligned_cols=155  Identities=12%  Similarity=0.026  Sum_probs=92.5

Q ss_pred             cCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHh---ccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHH
Q 044293           61 KSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQ---SSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQ  137 (236)
Q Consensus        61 ~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~---~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~  137 (236)
                      ++.+...++.++.++..++..-..    .....++.++..+.   .+ ++.++..+++++..++..-....... ...++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~  532 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISIS-NVQLADTVMFTIGALSEWLADHPVMI-NSVLP  532 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHH
Confidence            445667788888999988765322    01234445555442   23 67899999999998876422111222 57889


Q ss_pred             HHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHH--HhCcHHHHHHHhcCCC-hhhHHHHHHHHHHHHcC-C-hhhHHH
Q 044293          138 VLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAV--RAGAVSELIHLIGSTE-AEDLAGTSLAVLNLLAR-F-DEGMIA  212 (236)
Q Consensus       138 ~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~--~~g~i~~lv~ll~~~~-~~~~~~~a~~~L~~l~~-~-~~~~~~  212 (236)
                      .|+..|.+  +.++..|+.+|.++|....  ..+.  -...+..+..++...+ ....+..++.++..++. . ++.+..
T Consensus       533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~  608 (963)
T 2x19_B          533 LVLHALGN--PELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK  608 (963)
T ss_dssp             HHHHHTTC--GGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHhCC--chHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            99988865  7889999999999996321  1111  0233444555555422 24566777777777664 2 244544


Q ss_pred             HHhcCCcHHHHHHHh
Q 044293          213 LTKTDQIVSLMVDVL  227 (236)
Q Consensus       213 i~~~g~~i~~lv~~l  227 (236)
                      ....  +++++...+
T Consensus       609 ~~~~--l~~~l~~~l  621 (963)
T 2x19_B          609 NLHS--LISPYIQQL  621 (963)
T ss_dssp             HHHH--HHHHHHHHH
T ss_pred             HHHH--HHHHHHHHH
Confidence            4432  344444433

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=95.64  E-value=0.0086  Score=47.44  Aligned_cols=124  Identities=15%  Similarity=0.105  Sum_probs=70.7

Q ss_pred             HHhcCCCHHHHHHHHHH-----HHHHhcC-ChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHH-----HHhhCCCCc
Q 044293           15 SRSQSDSYEDQQKALQT-----LASITRV-SPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSI-----LLNLSLNPD   83 (236)
Q Consensus        15 ~~L~~~~~~~~~~a~~~-----L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~-----L~~l~~~~~   83 (236)
                      .++++++++++..++..     +..+..+ ++..|....+. -..+.|..+++.+++.++..++..     +..+..+++
T Consensus        57 ~ll~d~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~-L~~~~L~~ll~D~d~~VR~~aA~~l~~~~L~~L~~D~d  135 (244)
T 1lrv_A           57 QYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYR-LPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRD  135 (244)
T ss_dssp             GGTTCSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTT-SCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSS
T ss_pred             HHhcCCCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHH-CCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCC
Confidence            44578889999888754     3344433 56677777765 556777778888888888776653     223344433


Q ss_pred             --hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHH
Q 044293           84 --LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSS  157 (236)
Q Consensus        84 --~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a  157 (236)
                        .|..+...-..+.+..+++.. +.+++..++..+                 .-+.+..++.+++..++..++..
T Consensus       136 ~~VR~~aA~~l~~~~l~~l~~D~-d~~VR~~aa~~l-----------------~~~ll~~ll~D~d~~VR~aaa~~  193 (244)
T 1lrv_A          136 YLVRAYVVQRIPPGRLFRFMRDE-DRQVRKLVAKRL-----------------PEESLGLMTQDPEPEVRRIVASR  193 (244)
T ss_dssp             HHHHHHHHHHSCGGGGGGTTTCS-CHHHHHHHHHHS-----------------CGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHcCC-CHHHHHHHHHcC-----------------CHHHHHHHHcCCCHHHHHHHHHh
Confidence              244444332233333444444 666666666531                 11333455566666666666654

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=95.53  E-value=0.37  Score=38.50  Aligned_cols=132  Identities=11%  Similarity=-0.010  Sum_probs=91.3

Q ss_pred             cCCCHHHHHHHHHHHHHHhc----CChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhh-hcc
Q 044293           18 QSDSYEDQQKALQTLASITR----VSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLA-SME   92 (236)
Q Consensus        18 ~~~~~~~~~~a~~~L~~l~~----~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~g   92 (236)
                      .++++.+...++..|..+..    .+......-..  -.+|.|++-+......+|+.+-.++..++.       +. -..
T Consensus        97 ~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~--~~lP~LveKlGd~k~~vR~~~r~il~~l~~-------v~~~~~  167 (266)
T 2of3_A           97 FETNPAALIKVLELCKVIVELIRDTETPMSQEEVS--AFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-------VVGPLK  167 (266)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH--HHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH--HHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------HCCHHH
Confidence            46788888888888877642    11111221122  578999999977777888888777766543       12 123


Q ss_pred             cHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcH---HHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293           93 TIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTV---QVLVKAVSAPSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus        93 ~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i---~~Lv~lL~~~~~~~~~~a~~aL~~L~~  163 (236)
                      ..+.++.-+++. +.-+++-++..+..+-......    ...++   |.+.+++.+.+..++..|+.++..+-.
T Consensus       168 v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          168 MTPMLLDALKSK-NARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            555666767766 7888888888888775443322    24578   999999999999999999999876554

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=95.44  E-value=0.37  Score=40.15  Aligned_cols=110  Identities=14%  Similarity=0.191  Sum_probs=85.6

Q ss_pred             HHhhCCCCch-hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhc-CCCcHHHH
Q 044293           75 LLNLSLNPDL-KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVS-APSNPAGH  152 (236)
Q Consensus        75 L~~l~~~~~~-~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~  152 (236)
                      |.++-.|+.+ .+.+++.+|+..+...++.. +.++.......|...|....-+. +--...+|.++..+. .+++++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYp-N~~l~RaG~KLLLQVSDaksL~~-t~L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYP-NNDLIRAGCKLLLQVSDAKALAK-TPLENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHTTCGGGGT-SCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecC-CcHHHHhhhheeeeecchHHHhh-ccccccchHHHHHhccCCCcceEE
Confidence            3355666665 78899999999999999988 88998888888887776543221 112578899998886 56778889


Q ss_pred             HHHHHHHHHhcCC-CChHHHHHhCcHHHHHHHhcC
Q 044293          153 HLLSSLAELVQFH-GNSTLAVRAGAVSELIHLIGS  186 (236)
Q Consensus       153 ~a~~aL~~L~~~~-~~~~~~~~~g~i~~lv~ll~~  186 (236)
                      .-...|+|...++ ..++..+..|+|+.|-..+..
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k  378 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK  378 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence            9999999999887 456667889999999988854

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=95.28  E-value=0.012  Score=51.88  Aligned_cols=168  Identities=14%  Similarity=0.121  Sum_probs=108.8

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS   87 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~   87 (236)
                      +.+..++..+..+..+++-.++-.|..+ .  +-... +   +++++.++.-|+..+.+++..|+.+|.-++ .++.   
T Consensus       263 ~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~--DLL~~-L---d~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p~~---  331 (800)
T 3oc3_A          263 DIIEQLVGFLDSGDWQVQFSGLIALGYL-K--EFVED-K---DGLCRKLVSLLSSPDEDIKLLSAELLCHFP-ITDS---  331 (800)
T ss_dssp             CHHHHHTTGGGCSCHHHHHHHHHHHHHT-G--GGCCC-H---HHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CSST---
T ss_pred             HHHHHHHhhcCCCCeeehhhhHHHHHHH-H--HHHHH-H---HHHHHHHHhhcCCcccHHHHHHHHHhhhhc-chhh---
Confidence            4455556556778899999999889888 2  11111 2   378999999999999999999999999988 2221   


Q ss_pred             hhhcccHHHHHHHHhccCCH-HHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293           88 LASMETIYRLNWIIQSSSSQ-ETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG  166 (236)
Q Consensus        88 i~~~g~i~~L~~lL~~~~~~-~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~  166 (236)
                        -...+..+.+.|.+-+|. .........|..|+..+.+  .-.....+|.|...+++.-..++..++.+|..+.    
T Consensus       332 --l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL----  403 (800)
T 3oc3_A          332 --LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS----  403 (800)
T ss_dssp             --HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----
T ss_pred             --HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----
Confidence              123455666666653221 2233445566666665532  1223588999999999999999999999987766    


Q ss_pred             ChHHHHHhCcHHHHHH-HhcCCChhhHHHHHHHHHH
Q 044293          167 NSTLAVRAGAVSELIH-LIGSTEAEDLAGTSLAVLN  201 (236)
Q Consensus       167 ~~~~~~~~g~i~~lv~-ll~~~~~~~~~~~a~~~L~  201 (236)
                      +      ..++..+.+ +|-.. .+++++.+..+..
T Consensus       404 ~------~~~LRLIFQNILLE~-neeIl~lS~~VWk  432 (800)
T 3oc3_A          404 E------ESIDFLVAEVVLIEE-KDEIREMAIKLLK  432 (800)
T ss_dssp             C------HHHHHHHHHHHHHCS-CHHHHHHHHHHHH
T ss_pred             h------hhHHHHHHHHHHhCC-cHHHHHHHHHHHH
Confidence            1      112233222 22223 3567776666664

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=95.15  E-value=0.81  Score=38.58  Aligned_cols=140  Identities=13%  Similarity=0.119  Sum_probs=92.3

Q ss_pred             HHhHHHHHHHHhcC----C-------CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHH
Q 044293            6 VRETINNCVSRSQS----D-------SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSI   74 (236)
Q Consensus         6 ~~~~i~~lv~~L~~----~-------~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~   74 (236)
                      ..+++..|+..|..    .       +...+..++.+|+.++....+... +...++++..+...|.+.++.++..++.+
T Consensus        45 ~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~-vl~~~~~i~~l~~sL~s~~~~~r~~vleL  123 (386)
T 2bnx_A           45 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKT-MLETEEGILLLVRAMDPAVPNMMIDAAKL  123 (386)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHH-HHHSSSHHHHHHHTCCTTSHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHH-HHcCcHHHHHHHHHhCCCCchHHHHHHHH
Confidence            45677777777731    1       345677899999999887555444 45556999999999999999999999988


Q ss_pred             HHhhCCCCc--h-hHHhh----------hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc---hhhhh----hcccC
Q 044293           75 LLNLSLNPD--L-KQSLA----------SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD---KNKAR----FGVAG  134 (236)
Q Consensus        75 L~~l~~~~~--~-~~~i~----------~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~---~~~~~----i~~~g  134 (236)
                      |..+|..+.  + ...+.          +..--.+++..++.+.+.+.+..+...+-.+....   +.|.+    +...|
T Consensus       124 L~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~G  203 (386)
T 2bnx_A          124 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG  203 (386)
T ss_dssp             HHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence            888887664  4 23221          22345567777775546777777776666554443   23333    33455


Q ss_pred             cHHHHHHhhcCCC
Q 044293          135 TVQVLVKAVSAPS  147 (236)
Q Consensus       135 ~i~~Lv~lL~~~~  147 (236)
                       +..++.-|+...
T Consensus       204 -L~~il~~Lr~~~  215 (386)
T 2bnx_A          204 -LHQVLQELREIE  215 (386)
T ss_dssp             -HHHHHHHHTTCC
T ss_pred             -hHHHHHHHhccC
Confidence             555566666543

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=94.97  E-value=1.3  Score=36.51  Aligned_cols=185  Identities=13%  Similarity=0.064  Sum_probs=130.3

Q ss_pred             HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc-hhH----HhhhcccHHHHHHHHhcc-CCHHHHHHHHH
Q 044293           42 YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD-LKQ----SLASMETIYRLNWIIQSS-SSQETVKLASS  115 (236)
Q Consensus        42 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~----~i~~~g~i~~L~~lL~~~-~~~~~~~~a~~  115 (236)
                      ..+.+... |.+..|+..|..-+-+.+..+..+..++-.... ++.    .+..  - |-+++.|-.| +++++-.++-.
T Consensus        70 L~~ei~~~-dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~-peil~~L~~gYe~~diAl~~G~  145 (341)
T 1upk_A           70 LAQELYNS-GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--Q-QNILFMLLKGYESPEIALNCGI  145 (341)
T ss_dssp             HHHHHHHH-SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--C-THHHHHHHHGGGSTTTHHHHHH
T ss_pred             HHHHHHHh-CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--C-HHHHHHHHHhhccchhHhHHHH
Confidence            34566676 999999999988888999988888888765443 232    2222  1 2233333222 25677788888


Q ss_pred             HHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-CCCChHHHHHh---CcHHHHHHHhcCCChhh
Q 044293          116 LICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ-FHGNSTLAVRA---GAVSELIHLIGSTEAED  191 (236)
Q Consensus       116 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~~~~~~~~~---g~i~~lv~ll~~~~~~~  191 (236)
                      .|..+..++.....+...+.+..+.++++.++.++...|..++..|-. ++.-...+...   ..+...-+||.+++ --
T Consensus       146 mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~N-YV  224 (341)
T 1upk_A          146 MLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSEN-YV  224 (341)
T ss_dssp             HHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSS-HH
T ss_pred             HHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCc-ch
Confidence            899999998888878887888999999999999999999998877654 44444444443   24566777888774 67


Q ss_pred             HHHHHHHHHHHHcCChhhHHH---HHhcCCcHHHHHHHhhCCc
Q 044293          192 LAGTSLAVLNLLARFDEGMIA---LTKTDQIVSLMVDVLKGRS  231 (236)
Q Consensus       192 ~~~~a~~~L~~l~~~~~~~~~---i~~~g~~i~~lv~~l~~~~  231 (236)
                      .+.+++..|..+..+..+..-   ++..+.-+..+..+|++.+
T Consensus       225 TkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~s  267 (341)
T 1upk_A          225 TKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS  267 (341)
T ss_dssp             HHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC
T ss_pred             hHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCch
Confidence            889999999998877665444   4444433566667777655

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=94.84  E-value=1.5  Score=36.85  Aligned_cols=155  Identities=15%  Similarity=0.138  Sum_probs=99.3

Q ss_pred             HHHHHHHHhc-CChHHHHHHHhccCcHHHHHhhccC----C-------ChHHHHHHHHHHHhhCCCCchhHHhh-hcccH
Q 044293           28 ALQTLASITR-VSPQYRSLLAQTDGAISTLLGLSKS----S-------SPIIRTLSLSILLNLSLNPDLKQSLA-SMETI   94 (236)
Q Consensus        28 a~~~L~~l~~-~~~~~~~~i~~~~g~i~~Lv~lL~~----~-------~~~~~~~a~~~L~~l~~~~~~~~~i~-~~g~i   94 (236)
                      .+..|+.... +...+-+.|. . +|+..|+..|..    .       +...+..++.+|..+..+..+...+. ..+++
T Consensus        25 ~L~~L~v~Lrt~~~~Wv~~F~-~-~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i  102 (386)
T 2bnx_A           25 CLESLRVSLNNNPVSWVQTFG-A-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI  102 (386)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHH-H-HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHH
T ss_pred             HHHHHhHHHhcCCcHHHHHHH-H-hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHH
Confidence            4445544333 3345556675 5 789999988742    1       34567788899999988888866666 56789


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcccch--h-hhhh----------cccCcHHHHHHhhcCC-CcHHHHHHHHHHHH
Q 044293           95 YRLNWIIQSSSSQETVKLASSLICSLAMLDK--N-KARF----------GVAGTVQVLVKAVSAP-SNPAGHHLLSSLAE  160 (236)
Q Consensus        95 ~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~  160 (236)
                      ..+...|.+. ++.++..++..|..+|..++  + -..+          .+..-+.++|..+... +.+....++..+-.
T Consensus       103 ~~l~~sL~s~-~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~  181 (386)
T 2bnx_A          103 LLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA  181 (386)
T ss_dssp             HHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCC-CchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            9999999877 78999999888888887654  2 1111          2344667788888754 33444454444555


Q ss_pred             HhcCCCC-------hHHHHHhCcHHHHHHHhcC
Q 044293          161 LVQFHGN-------STLAVRAGAVSELIHLIGS  186 (236)
Q Consensus       161 L~~~~~~-------~~~~~~~g~i~~lv~ll~~  186 (236)
                      +..+++.       |..+...|..+.+ .-|+.
T Consensus       182 lv~~~~dl~~R~~LR~Ef~~~GL~~il-~~Lr~  213 (386)
T 2bnx_A          182 LITPAEELDFRVHIRSELMRLGLHQVL-QELRE  213 (386)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHTTHHHHH-HHHTT
T ss_pred             HHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhc
Confidence            5555554       3344455655554 45544

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=94.79  E-value=1  Score=42.42  Aligned_cols=131  Identities=10%  Similarity=0.007  Sum_probs=78.8

Q ss_pred             CChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHH---h--ccCCHHHHHHHHHHHHHhcccch-hhhhhcccCcH
Q 044293           63 SSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWII---Q--SSSSQETVKLASSLICSLAMLDK-NKARFGVAGTV  136 (236)
Q Consensus        63 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL---~--~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i  136 (236)
                      .+-..++.++.++..++.......    ...++.++.++   .  .. ++.++..++++|..++..-. +...+  ...+
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl  548 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYI--PPAI  548 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CH--HHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence            345678888888888876533211    13444444443   2  22 68899999999998876432 12111  3566


Q ss_pred             HHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHH--hCcHHHHHHHhcCCC-hhhHHHHHHHHHHHHcC
Q 044293          137 QVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVR--AGAVSELIHLIGSTE-AEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       137 ~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~--~g~i~~lv~ll~~~~-~~~~~~~a~~~L~~l~~  205 (236)
                      +.|+..|.   +++...|+.++.++|...  +..+..  ...+..+.+++..++ +...+..++.++..++.
T Consensus       549 ~~l~~~l~---~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~  615 (971)
T 2x1g_F          549 NLLVRGLN---SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS  615 (971)
T ss_dssp             HHHHHHHH---SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC---hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence            77777773   678999999999999532  333321  345555666676531 24566677777776653

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=94.11  E-value=1.4  Score=41.23  Aligned_cols=154  Identities=14%  Similarity=0.065  Sum_probs=94.3

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhc---cCCChHHHHHHHHHHHhhCCCCchhHHhhhcccH
Q 044293           18 QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS---KSSSPIIRTLSLSILLNLSLNPDLKQSLASMETI   94 (236)
Q Consensus        18 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL---~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i   94 (236)
                      .+.+...++.++.++..++..-...     +. ..++.++..+   ..+++.++..+++++..++..-....... ...+
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~-~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl  531 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVN-----YS-DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVL  531 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSS-----CC-SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCch-----hh-HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHH
Confidence            4567778888888898888652211     11 3344444332   33578899999999998775311111222 3678


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc--cCcHHHHHHhhcCC--CcHHHHHHHHHHHHHhcCCC--Ch
Q 044293           95 YRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV--AGTVQVLVKAVSAP--SNPAGHHLLSSLAELVQFHG--NS  168 (236)
Q Consensus        95 ~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~~~~--~~  168 (236)
                      +.++..|+   ++.++..|+.++.+++..  .+..+..  ...++.|..++.++  +...+.....++..+...-+  ..
T Consensus       532 ~~l~~~l~---~~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~  606 (963)
T 2x19_B          532 PLVLHALG---NPELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI  606 (963)
T ss_dssp             HHHHHHTT---CGGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHhC---CchHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHH
Confidence            88888885   368899999999999863  3344432  34555556666653  45677888888888876432  22


Q ss_pred             HHHHHhCcHHHHHHHh
Q 044293          169 TLAVRAGAVSELIHLI  184 (236)
Q Consensus       169 ~~~~~~g~i~~lv~ll  184 (236)
                      ...+ ...++++...+
T Consensus       607 ~~~~-~~l~~~l~~~l  621 (963)
T 2x19_B          607 LKNL-HSLISPYIQQL  621 (963)
T ss_dssp             HHHH-HHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHH
Confidence            2221 34555555544

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=93.54  E-value=0.24  Score=35.49  Aligned_cols=75  Identities=8%  Similarity=0.112  Sum_probs=58.9

Q ss_pred             hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhC
Q 044293            4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLS   79 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~   79 (236)
                      ....+.+..+.+.|++.++.++..|+..|-.+..+ +......+... ..+..|+.+++..++.+++.++..+..-+
T Consensus        38 ~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~-~Fl~el~~l~~~~~~~Vk~kil~li~~W~  113 (140)
T 3ldz_A           38 TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSR-DFASEVSNVLNKGHPKVCEKLKALMVEWT  113 (140)
T ss_dssp             THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSH-HHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhH-HHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            34577889999999999999999999988888776 34556666665 78888888887778899988888887543

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=93.12  E-value=0.55  Score=33.95  Aligned_cols=74  Identities=14%  Similarity=0.112  Sum_probs=61.0

Q ss_pred             hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC------CChHHHHHHHHHHH
Q 044293            4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS------SSPIIRTLSLSILL   76 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~   76 (236)
                      ...++.+..+.+.|++.++.++..|+..|-.+..+ +..+...+... .++..|+.+++.      .++.+++.++..+.
T Consensus        34 ~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~-~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~  112 (148)
T 1mhq_A           34 NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKF-RFLNELIKVLSPKYLGSWATGKVKGRVIEILF  112 (148)
T ss_dssp             HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSH-HHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH-HHHHHHHHHHccccCCCCCCHHHHHHHHHHHH
Confidence            34577889999999999999999999999988887 56677888876 899999999874      36788888888877


Q ss_pred             hh
Q 044293           77 NL   78 (236)
Q Consensus        77 ~l   78 (236)
                      .-
T Consensus       113 ~W  114 (148)
T 1mhq_A          113 SW  114 (148)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=93.10  E-value=0.39  Score=35.34  Aligned_cols=72  Identities=10%  Similarity=0.129  Sum_probs=58.4

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHh
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLN   77 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~   77 (236)
                      ..++.+..+.+.|++.++.++..|+..|-.+..+ ...+...+... ..+..|+.+++. .++.+++.++..+..
T Consensus        49 ~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~-~Fl~el~~l~~~~~~~~Vk~kil~li~~  122 (163)
T 1x5b_A           49 GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSR-DFATEVRAVIKNKAHPKVCEKLKSLMVE  122 (163)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSH-HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhH-HHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence            4577888999999999999999999999888877 45667777765 788888888865 567888888887764

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=92.73  E-value=0.29  Score=43.40  Aligned_cols=155  Identities=14%  Similarity=0.162  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhh-hcccHHHHHHH
Q 044293           22 YEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLA-SMETIYRLNWI  100 (236)
Q Consensus        22 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~g~i~~L~~l  100 (236)
                      .++|+.++.+|..+ .+=++-      . .++..++..+..+.=+++-.++-.|.-+      ++.+. =.+.++.++.-
T Consensus       242 APVRETaAQtLGaL-~hLp~e------~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~G  307 (800)
T 3oc3_A          242 APVRDAAAYLLSRI-YPLIGP------N-DIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSL  307 (800)
T ss_dssp             CHHHHHHHHHHHHH-TTTSCS------C-CHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHH
T ss_pred             eehHHHHHHHHHHH-HhCChh------H-HHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhh
Confidence            56888888888888 542221      3 5677777666666668888888888877      22221 25677778888


Q ss_pred             HhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhc----CCCc--HHHHHHHHHHHHHhcCCCChHHHHHh
Q 044293          101 IQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVS----APSN--PAGHHLLSSLAELVQFHGNSTLAVRA  174 (236)
Q Consensus       101 L~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~----~~~~--~~~~~a~~aL~~L~~~~~~~~~~~~~  174 (236)
                      |+.. ++|++..||.+|.-++          ..+.++.++..++    +-++  ......+..|+.|+..+.+.  ....
T Consensus       308 L~D~-DDDVRAVAAetLiPIA----------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp  374 (800)
T 3oc3_A          308 LSSP-DEDIKLLSAELLCHFP----------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPP  374 (800)
T ss_dssp             TTCS-SHHHHHHHHHHHTTSC----------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCS
T ss_pred             cCCc-ccHHHHHHHHHhhhhc----------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccCh
Confidence            8877 8999999999999888          2244555555554    3221  23455667788888876421  1123


Q ss_pred             CcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          175 GAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       175 g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                      ..+|.|...+.++ -..++..++.+|..+.
T Consensus       375 ~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL  403 (800)
T 3oc3_A          375 ERLKDIFPCFTSP-VPEVRTSILNMVKNLS  403 (800)
T ss_dssp             GGGGGTGGGGTCS-SHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHhhhcCC-cHHHHHHHHHHHHHHH
Confidence            7788899999887 3678888888887766

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=92.43  E-value=1.5  Score=41.87  Aligned_cols=153  Identities=11%  Similarity=0.120  Sum_probs=86.7

Q ss_pred             hHHHHHHHHh----cC--CCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccCC---Ch--HHHHHHHHHH
Q 044293            8 ETINNCVSRS----QS--DSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKSS---SP--IIRTLSLSIL   75 (236)
Q Consensus         8 ~~i~~lv~~L----~~--~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~---~~--~~~~~a~~~L   75 (236)
                      +.++.++..+    ..  .+...++.++++++.++.. .++.-..+..  .+++.|+.++.+.   ++  .++..+++++
T Consensus       447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~--~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~l  524 (1023)
T 4hat_C          447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV--TVIKDLLDLCVKKRGKDNKAVVASDIMYVV  524 (1023)
T ss_dssp             HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH--HHHHHHHHhhhccccCcchHHHHHHHHHHH
Confidence            3444455554    32  5788999999999998865 2221223332  4789999987641   22  3344555666


Q ss_pred             HhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc------cCcHHHHHHhhc----C
Q 044293           76 LNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV------AGTVQVLVKAVS----A  145 (236)
Q Consensus        76 ~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~------~g~i~~Lv~lL~----~  145 (236)
                      ...+.-=....... ...+..|+..+... ++.++..|++++.++|..  .+..+..      ...++.++..+.    .
T Consensus       525 Gry~~wl~~~~~~L-~~vl~~L~~~l~~~-~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~  600 (1023)
T 4hat_C          525 GQYPRFLKAHWNFL-RTVILKLFEFMHET-HEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTAD  600 (1023)
T ss_dssp             HTCHHHHHHCHHHH-HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTT
T ss_pred             HHHHHHHhccHHHH-HHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHh
Confidence            65433111101110 12333344444434 678999999999999984  3333421      224555554443    3


Q ss_pred             CCcHHHHHHHHHHHHHhcCCC
Q 044293          146 PSNPAGHHLLSSLAELVQFHG  166 (236)
Q Consensus       146 ~~~~~~~~a~~aL~~L~~~~~  166 (236)
                      -++........+++.+...-.
T Consensus       601 l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          601 LQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHhCC
Confidence            345566777788877777543

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=92.39  E-value=0.63  Score=33.67  Aligned_cols=73  Identities=12%  Similarity=0.138  Sum_probs=59.2

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC------CChHHHHHHHHHHHh
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS------SSPIIRTLSLSILLN   77 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~   77 (236)
                      ..++.+..+.+.+++.++.++..|+..|-.+..+ +..+...|... .++..|+.+++.      .++.+++.++..+..
T Consensus        45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~-~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~  123 (149)
T 3g2s_A           45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKF-RFLNELIKVVSPKYLGSRTSEKVKNKILELLYS  123 (149)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSH-HHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhH-HHHHHHHHHHcccccCCCCCHHHHHHHHHHHHH
Confidence            4577889999999999999999999999888876 34566777776 889999999863      467888888888875


Q ss_pred             h
Q 044293           78 L   78 (236)
Q Consensus        78 l   78 (236)
                      -
T Consensus       124 W  124 (149)
T 3g2s_A          124 W  124 (149)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=92.00  E-value=0.58  Score=34.71  Aligned_cols=73  Identities=12%  Similarity=0.157  Sum_probs=59.3

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC------CChHHHHHHHHHHHh
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS------SSPIIRTLSLSILLN   77 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~   77 (236)
                      ..++.+..|.+.+++.++.++..|+..|-.+..+ +..+...+... ..+..|+.+++.      .++.+++.++..+..
T Consensus        47 ~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~-~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~  125 (171)
T 1juq_A           47 GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKF-RFLNELIKVVSPKYLGDRVSEKVKTKVIELLYS  125 (171)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH-HHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH-HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence            4577888999999999999999999999888887 35567778776 899999999863      357888888888875


Q ss_pred             h
Q 044293           78 L   78 (236)
Q Consensus        78 l   78 (236)
                      -
T Consensus       126 W  126 (171)
T 1juq_A          126 W  126 (171)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=91.98  E-value=0.13  Score=40.59  Aligned_cols=101  Identities=12%  Similarity=0.126  Sum_probs=52.4

Q ss_pred             HHHhcCCCHHHHHHHHHHH-----HHHhcC-ChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHH-----HHhhCCCC
Q 044293           14 VSRSQSDSYEDQQKALQTL-----ASITRV-SPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSI-----LLNLSLNP   82 (236)
Q Consensus        14 v~~L~~~~~~~~~~a~~~L-----~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~-----L~~l~~~~   82 (236)
                      ..+++++++.++..++..|     ..+..+ +...|...... -..+.|..+++.+++.+|..++..     +..+..++
T Consensus        80 ~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~-l~~~~L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~D~  158 (244)
T 1lrv_A           80 TPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADR-LPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDE  158 (244)
T ss_dssp             GGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHH-SCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCS
T ss_pred             HHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHh-CCHHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHcCC
Confidence            3444566666666665432     222222 34455555543 333445555666667776665552     22234444


Q ss_pred             c--hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHH
Q 044293           83 D--LKQSLASMETIYRLNWIIQSSSSQETVKLASSL  116 (236)
Q Consensus        83 ~--~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~  116 (236)
                      +  .|..++..-.-+.+..+++.. +.+++..++..
T Consensus       159 d~~VR~~aa~~l~~~ll~~ll~D~-d~~VR~aaa~~  193 (244)
T 1lrv_A          159 DRQVRKLVAKRLPEESLGLMTQDP-EPEVRRIVASR  193 (244)
T ss_dssp             CHHHHHHHHHHSCGGGGGGSTTCS-SHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHh
Confidence            3  254454433334444555665 78888877765

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=91.16  E-value=2  Score=40.34  Aligned_cols=177  Identities=12%  Similarity=0.009  Sum_probs=101.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhh--hcccHHHH
Q 044293           20 DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLA--SMETIYRL   97 (236)
Q Consensus        20 ~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~--~~g~i~~L   97 (236)
                      +++.++..+++++..++..-..+.+ ...  .+++.|+..|+   +.++..|+.++.+++.  +.+..+.  -.+.+..+
T Consensus       518 ~~~~vr~~a~~~l~~~~~~l~~~~~-~l~--~vl~~l~~~l~---~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l  589 (971)
T 2x1g_F          518 LNVKLLGTALETMGSYCNWLMENPA-YIP--PAINLLVRGLN---SSMSAQATLGLKELCR--DCQLQLKPYADPLLNAC  589 (971)
T ss_dssp             SCHHHHHHHHHHHHHTHHHHC-----CHH--HHHHHHHHHHH---SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhcCHH-HHH--HHHHHHHHHhC---hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHH
Confidence            4788899999999988753111122 222  46777777773   6788999999999984  2334443  24577777


Q ss_pred             HHHHhccC-CHHHHHHHHHHHHHhcccc--hhhhhhcccCcHHHHHHhhc----CC--CcHHHHHHHHHHHHHh---cCC
Q 044293           98 NWIIQSSS-SQETVKLASSLICSLAMLD--KNKARFGVAGTVQVLVKAVS----AP--SNPAGHHLLSSLAELV---QFH  165 (236)
Q Consensus        98 ~~lL~~~~-~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~----~~--~~~~~~~a~~aL~~L~---~~~  165 (236)
                      ..++.++. +.+.+..+..++..++..-  +.+.... ...+++++..+.    ..  +++.......++..|+   ..-
T Consensus       590 ~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l  668 (971)
T 2x1g_F          590 HASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSL  668 (971)
T ss_dssp             HHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhc
Confidence            77787642 5678888888877765421  2222222 244455554443    22  2223333333333332   211


Q ss_pred             CC-----------hH--HHHHhCcHHHHHHHhcCC-ChhhHHHHHHHHHHHHcC
Q 044293          166 GN-----------ST--LAVRAGAVSELIHLIGST-EAEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       166 ~~-----------~~--~~~~~g~i~~lv~ll~~~-~~~~~~~~a~~~L~~l~~  205 (236)
                      ..           ..  .-.....+|.+..++... ++..+.+.++.++..++.
T Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          669 NTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             TC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            00           01  112356788888877542 235788999999888764

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=90.05  E-value=2.3  Score=36.74  Aligned_cols=96  Identities=15%  Similarity=0.098  Sum_probs=66.0

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      .+.|..++++..+++..+|..|.+.|-.+|.+  ++   +.   .++..|+++|+.+++.-...+-.+|..+-..+    
T Consensus        64 ~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~---i~---kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~D----  131 (507)
T 3u0r_A           64 DSAINAQLDLCEDEDVSIRRQAIKELPQFATG--EN---LP---RVADILTQLLQTDDSAEFNLVNNALLSIFKMD----  131 (507)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TC---HH---HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hh---hh---hHHHHHHHHHhccchHHHHHHHHHHHHHHhcC----
Confidence            46788888999889999999999999999986  23   22   46778899999887654444444444332211    


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHHHHHH
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLASSLIC  118 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~  118 (236)
                         -.+.+..+...+.++ ++.+|+.+...|.
T Consensus       132 ---pk~tl~~lf~~i~~~-~e~~Rer~lkFi~  159 (507)
T 3u0r_A          132 ---AKGTLGGLFSQILQG-EDIVRERAIKFLS  159 (507)
T ss_dssp             ---HHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHHccc-chHHHHHHHHHHH
Confidence               134555666666666 6788888777775

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=89.66  E-value=7.2  Score=31.62  Aligned_cols=147  Identities=11%  Similarity=0.110  Sum_probs=91.3

Q ss_pred             HHHHHHHhcCC------CHHHHHHHHHHHHHHhcCChHHHHHHHhc-cCcHHHHHhhccCCChHHHHHHHHHHHhhCC-C
Q 044293           10 INNCVSRSQSD------SYEDQQKALQTLASITRVSPQYRSLLAQT-DGAISTLLGLSKSSSPIIRTLSLSILLNLSL-N   81 (236)
Q Consensus        10 i~~lv~~L~~~------~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~   81 (236)
                      .....++++++      +.+....|+..|..++.+. ..=..|+++ ...+..|+ +.....+.+++.|+++|..+-. +
T Consensus        24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi-~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN  101 (315)
T 3qml_C           24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDY-KHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNN  101 (315)
T ss_dssp             HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSH-HHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhH-HhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC
Confidence            34455566555      3445678999999999873 444555553 13344444 2344566889999999996555 4


Q ss_pred             CchhHHhhh--cccHHHHHHHHhc----c--CCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCC--CcHHH
Q 044293           82 PDLKQSLAS--METIYRLNWIIQS----S--SSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAP--SNPAG  151 (236)
Q Consensus        82 ~~~~~~i~~--~g~i~~L~~lL~~----~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~  151 (236)
                      |.....|.+  ...+..+..-|..    +  ....+.+.-+++|-.|..++   ..+ ...++..|.+++...  ++..+
T Consensus       102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~---~~F-~~~~m~~L~~ly~~~~~d~~~k  177 (315)
T 3qml_C          102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS---EDL-PIYSTVVLQNVYERNNKDKQLQ  177 (315)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS---TTC---CCHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh---Hhh-hhccHHHHHHHHccCCCCHHHH
Confidence            555555553  4666666655543    1  14466777888888888876   223 245678888888766  67777


Q ss_pred             HHHHHHHHHHh
Q 044293          152 HHLLSSLAELV  162 (236)
Q Consensus       152 ~~a~~aL~~L~  162 (236)
                      ..++..+..+=
T Consensus       178 ~Kvl~li~d~f  188 (315)
T 3qml_C          178 IKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            77776664443

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=89.50  E-value=3  Score=29.71  Aligned_cols=76  Identities=16%  Similarity=0.168  Sum_probs=51.8

Q ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccCCC--------hHHHHHHHHHHH
Q 044293            6 VRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKSSS--------PIIRTLSLSILL   76 (236)
Q Consensus         6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~--------~~~~~~a~~~L~   76 (236)
                      ..+..+.|.+.|+..++.+..+|+..|..++.+ ++.++..+.+....|..+..+=-.++        ..+|..|-.++.
T Consensus        47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~  126 (140)
T 1vdy_A           47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS  126 (140)
T ss_dssp             HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence            478889999999999999999999999999966 56677777776344444444322222        255666666665


Q ss_pred             hhCCC
Q 044293           77 NLSLN   81 (236)
Q Consensus        77 ~l~~~   81 (236)
                      .|...
T Consensus       127 ll~d~  131 (140)
T 1vdy_A          127 AIFSE  131 (140)
T ss_dssp             HHTCC
T ss_pred             HHhCc
Confidence            55443

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=89.00  E-value=5.3  Score=37.99  Aligned_cols=181  Identities=13%  Similarity=0.029  Sum_probs=99.6

Q ss_pred             HHHHhc-CCCHHHHHHHHHHHHHHhcC-----ChHHHHHHHhccCcHHHHHhhccCC-----ChHHHHHHHHHHHhhCCC
Q 044293           13 CVSRSQ-SDSYEDQQKALQTLASITRV-----SPQYRSLLAQTDGAISTLLGLSKSS-----SPIIRTLSLSILLNLSLN   81 (236)
Q Consensus        13 lv~~L~-~~~~~~~~~a~~~L~~l~~~-----~~~~~~~i~~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~l~~~   81 (236)
                      +...|. +.++.+|..|+..|.+....     .++.+..+.+  ..+..+...-..+     ++.++...+.++..++..
T Consensus        53 l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~--~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~  130 (1049)
T 3m1i_C           53 ADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN--FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQ  130 (1049)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH--HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHH--HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHH
Confidence            334442 34566666677777665432     2334444443  2444444332111     345666666777766654


Q ss_pred             C--chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchh--------------hhhhcc--cCcHHHHHHhh
Q 044293           82 P--DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKN--------------KARFGV--AGTVQVLVKAV  143 (236)
Q Consensus        82 ~--~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~--------------~~~i~~--~g~i~~Lv~lL  143 (236)
                      +  +..     .+.++.|+..++ . ++..++.+..+|..++..-..              +..+..  ...++.+...+
T Consensus       131 ~~p~~W-----p~ll~~L~~~~~-~-~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l  203 (1049)
T 3m1i_C          131 EWPQNW-----PEFIPELIGSSS-S-SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVL  203 (1049)
T ss_dssp             HTTTTC-----TTHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCcccc-----hHHHHHHHHHHc-c-ChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2  221     467888888886 4 566677788888877743110              011222  22334444555


Q ss_pred             cC-CCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293          144 SA-PSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       144 ~~-~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~  205 (236)
                      .+ .++.++..++.++.....+-+. ..+.+...++.+.+.+..  .+++...|+.+|..+..
T Consensus       204 ~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~  263 (1049)
T 3m1i_C          204 EQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSN  263 (1049)
T ss_dssp             HHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHh
Confidence            43 3566788899999887765443 223445566665532222  25677778888777664

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=88.83  E-value=5.1  Score=38.11  Aligned_cols=139  Identities=11%  Similarity=0.101  Sum_probs=78.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCChHH-HHHHHhccCcHHHHHhhccC-----CChHHHHHHHHHHHhhCCCCchhHHhhhccc
Q 044293           20 DSYEDQQKALQTLASITRVSPQY-RSLLAQTDGAISTLLGLSKS-----SSPIIRTLSLSILLNLSLNPDLKQSLASMET   93 (236)
Q Consensus        20 ~~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~   93 (236)
                      .+...+..++.++..++..-... ...+..  .+++.|+.+...     +.+.++..+++++...+..-....... ...
T Consensus       465 ~~W~~~eaal~algsia~~~~~~~e~~~l~--~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l-~~v  541 (1049)
T 3m1i_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVV--TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTV  541 (1049)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHH
T ss_pred             CCHHHHHHHHHHHHHHhcccCchhhHHHHH--HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH-HHH
Confidence            56778888999999887542221 112221  456666664332     123334456777776553211111111 246


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhc--c----cCcHHHHH----HhhcCCCcHHHHHHHHHHHHHhc
Q 044293           94 IYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFG--V----AGTVQVLV----KAVSAPSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus        94 i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~--~----~g~i~~Lv----~lL~~~~~~~~~~a~~aL~~L~~  163 (236)
                      ++.++..+.+. ++.++..|+.++.+++...  +..+.  .    ...++.++    .++..-+.........++..+..
T Consensus       542 l~~ll~~l~~~-~~~V~~~A~~al~~l~~~~--~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~  618 (1049)
T 3m1i_C          542 ILKLFEFMHET-HEGVQDMACDTFIKIVQKC--KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1049)
T ss_dssp             HHHHHHHTTSS-CHHHHHHHHHHHHHHHHHH--THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHH--HHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            66777777766 7999999999999999843  33332  0    13344444    44444444455566677766665


Q ss_pred             C
Q 044293          164 F  164 (236)
Q Consensus       164 ~  164 (236)
                      .
T Consensus       619 ~  619 (1049)
T 3m1i_C          619 E  619 (1049)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=87.96  E-value=1.5  Score=33.94  Aligned_cols=73  Identities=14%  Similarity=0.157  Sum_probs=58.1

Q ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhC
Q 044293            6 VRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLS   79 (236)
Q Consensus         6 ~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~   79 (236)
                      ..+.+..|.+.|++.++.++..|+..|-.+..+ +......|... ..+..|+.+++. .++.+++.++..+..-+
T Consensus        43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~-~fl~~l~~l~~~~~~~~Vk~kil~li~~W~  117 (226)
T 3zyq_A           43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANK-QTMEELKDLLKRQVEVNVRNKILYLIQAWA  117 (226)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            577899999999999999999999999888876 44466677765 788888888754 46788888888887643

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=86.80  E-value=6.7  Score=30.57  Aligned_cols=139  Identities=9%  Similarity=0.016  Sum_probs=83.4

Q ss_pred             HHHHHh-cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhc-cCCChHHHHHHHHHHHhhCC--CCchhHH
Q 044293           12 NCVSRS-QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLS-KSSSPIIRTLSLSILLNLSL--NPDLKQS   87 (236)
Q Consensus        12 ~lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~--~~~~~~~   87 (236)
                      .+...| +++..++|..|+..|..+ ...         . ..++.+-..+ ..++=.+++.++.++..++.  +++.   
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~-~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---  139 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------K-EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---  139 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------H-HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-cCc---------H-HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence            344444 566677888888877666 211         1 3455555533 33444788888888877653  3331   


Q ss_pred             hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC-
Q 044293           88 LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH-  165 (236)
Q Consensus        88 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-  165 (236)
                           .++.+....+++ +..++..|+..+.--+.....+   .+ .-++|.|-.+..+++.-+++...++|..++..+ 
T Consensus       140 -----~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          140 -----ALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             -----THHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             -----HHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence                 566777777777 8999998887765322221111   11 223455555555667778889999999999854 


Q ss_pred             CChHHHHH
Q 044293          166 GNSTLAVR  173 (236)
Q Consensus       166 ~~~~~~~~  173 (236)
                      +-...+++
T Consensus       211 d~V~~~~~  218 (240)
T 3l9t_A          211 DLVKIELK  218 (240)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            43444443

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=86.80  E-value=13  Score=31.14  Aligned_cols=117  Identities=9%  Similarity=0.094  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccC
Q 044293           26 QKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS  105 (236)
Q Consensus        26 ~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~  105 (236)
                      ..+...|.-+..+ ...-.-|++. +||..+--..+.++.++.+.....|.+.+....-+.. --...+|.++..+....
T Consensus       261 tR~FDLL~LLmHd-SnAIDGFVk~-DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t-~L~e~LPFi~~~i~~h~  337 (619)
T 3c2g_A          261 IRTFDLLGLLLHD-SDAIDGFVRS-DGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT-PLENILPFLLRLIEIHP  337 (619)
T ss_dssp             HHHHHHHHHHCCS-HHHHHHHHHT-THHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS-CCTTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhcc-cccccceeec-ccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc-cccccchHHHHHhccCC
Confidence            3455555555554 4456778888 9999999999999999988889999887654332111 12357788888777443


Q ss_pred             CHHHHHHHHHHHHHhcccch-hhhhhcccCcHHHHHHhhcC
Q 044293          106 SQETVKLASSLICSLAMLDK-NKARFGVAGTVQVLVKAVSA  145 (236)
Q Consensus       106 ~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~  145 (236)
                      +.++.-...+.|.|...+.. .|+.-...|+|+.|-+.+..
T Consensus       338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k  378 (619)
T 3c2g_A          338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK  378 (619)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence            78999999999999988774 45554568999999988854

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=86.27  E-value=2.6  Score=40.24  Aligned_cols=111  Identities=11%  Similarity=-0.071  Sum_probs=68.4

Q ss_pred             HHHHHhhccC--CChHHHHHHHHHHHhhCCCCch-hHHhhhcccHHHHHHHHhccC--CH--HHHHHHHHHHHHhcccch
Q 044293           53 ISTLLGLSKS--SSPIIRTLSLSILLNLSLNPDL-KQSLASMETIYRLNWIIQSSS--SQ--ETVKLASSLICSLAMLDK  125 (236)
Q Consensus        53 i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~g~i~~L~~lL~~~~--~~--~~~~~a~~~L~~Ls~~~~  125 (236)
                      ++.+-+.+.+  .+-..++.++.+++.++..... ...-.-...++.|+.++....  ++  -++..++++|...+..-.
T Consensus       453 ~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~  532 (1023)
T 4hat_C          453 ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK  532 (1023)
T ss_dssp             HHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh
Confidence            4444444443  3557789999999999876543 222223457788888876421  12  233456677776555332


Q ss_pred             hhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293          126 NKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF  164 (236)
Q Consensus       126 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~  164 (236)
                      ...... ...+..|+..+...++.+...|++++.++|..
T Consensus       533 ~~~~~L-~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~  570 (1023)
T 4hat_C          533 AHWNFL-RTVILKLFEFMHETHEGVQDMACDTFIKIVQK  570 (1023)
T ss_dssp             HCHHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence            111111 34455566666667788999999999999973

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=84.83  E-value=4.2  Score=29.51  Aligned_cols=73  Identities=12%  Similarity=0.249  Sum_probs=56.1

Q ss_pred             HHHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHH-HHhhccC---CChHHHHHHHHHHHhh
Q 044293            5 RVRETINNCVSRSQ-SDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAIST-LLGLSKS---SSPIIRTLSLSILLNL   78 (236)
Q Consensus         5 ~~~~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~-Lv~lL~~---~~~~~~~~a~~~L~~l   78 (236)
                      ..++.+..+.+.|+ +.++.++..|+..|-.+..+ ++.....+... ..+.. |+.++..   ....+++.++..+..-
T Consensus        50 ~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~-~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W  128 (157)
T 1elk_A           50 GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQ-DFVESVLVRTILPKNNPPTIVHDKVLNLIQSW  128 (157)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSH-HHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhH-HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence            45778889999997 47899999999999888877 36677777775 88887 7888743   2347888888777653

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=84.25  E-value=2.3  Score=32.76  Aligned_cols=73  Identities=11%  Similarity=0.084  Sum_probs=56.7

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhh
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNL   78 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l   78 (236)
                      ...+.+..+.+.|++.++.++..|+..|-.+..+. ......+... ..+..|+.++.. .++++++.++..+..-
T Consensus        39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~-~fl~~l~~l~~~~~~~~Vk~kil~li~~W  113 (220)
T 1dvp_A           39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTK-ENCEMFSSFLESTPHENVRQKMLELVQTW  113 (220)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            45678888999999999999999999998888773 4456677765 788888888754 4578888887777653

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=83.83  E-value=15  Score=35.19  Aligned_cols=124  Identities=13%  Similarity=0.033  Sum_probs=75.4

Q ss_pred             hhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhc------cCCHHHHHHHHHHHHHhcccchhhhhhc
Q 044293           58 GLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQS------SSSQETVKLASSLICSLAMLDKNKARFG  131 (236)
Q Consensus        58 ~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~------~~~~~~~~~a~~~L~~Ls~~~~~~~~i~  131 (236)
                      ..++..+.+-...++.+|.|+...          ..++.|..++..      +....++..|.++|..++....      
T Consensus       447 ~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p------  510 (1056)
T 1lsh_A          447 QSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP------  510 (1056)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH------
T ss_pred             HHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch------
Confidence            334555666666777888887652          345666666531      1135677778888888874321      


Q ss_pred             ccCcHHHHHHhhcC--CCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh
Q 044293          132 VAGTVQVLVKAVSA--PSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD  207 (236)
Q Consensus       132 ~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~  207 (236)
                       .-+-+.+.++..+  .+++++..|+..|....   +.      ...+..+...+....+.++.......|.+++...
T Consensus       511 -~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~---P~------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          511 -RKVQEIVLPIFLNVAIKSELRIRSCIVFFESK---PS------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             -HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTC---CC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             -HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHC---cC------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence             1234567777744  45567766666653221   11      1334566777766445788888999999998754

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=83.82  E-value=14  Score=29.06  Aligned_cols=109  Identities=10%  Similarity=0.052  Sum_probs=67.6

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHh-------
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLN-------   77 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~-------   77 (236)
                      -+.+.++.++.+-.+.+.++|+..+..|...+...++    +.-  ..++.|..+|+..++.+.+.+..+..+       
T Consensus        50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~----l~~--~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~  123 (257)
T 3gs3_A           50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE----LLP--HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQ  123 (257)
T ss_dssp             GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG----GHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3466777777766677888888888888888755332    222  468888888888888777766655444       


Q ss_pred             -hCCCCchh---HHhh-h-cccHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 044293           78 -LSLNPDLK---QSLA-S-METIYRLNWIIQSSSSQETVKLASSLICSL  120 (236)
Q Consensus        78 -l~~~~~~~---~~i~-~-~g~i~~L~~lL~~~~~~~~~~~a~~~L~~L  120 (236)
                       ++.++..-   ...= . ...=..++.+++++ +..++.+|...+-.+
T Consensus       124 ~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~-n~gvkl~~iKF~e~v  171 (257)
T 3gs3_A          124 YLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE-NDGIRTNAIKFLEGV  171 (257)
T ss_dssp             HHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS-CHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC-CcchHHHHHHHHHHH
Confidence             35554311   1100 0 12333455556666 777887777666553

>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A

Probab=83.52  E-value=10  Score=27.12  Aligned_cols=115  Identities=17%  Similarity=0.167  Sum_probs=71.2

Q ss_pred             CCchHHHhHHHHHHHHhcC---CCHHH---------HHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC------
Q 044293            1 MSAPRVRETINNCVSRSQS---DSYED---------QQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS------   62 (236)
Q Consensus         1 ~~~~~~~~~i~~lv~~L~~---~~~~~---------~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~------   62 (236)
                      ||++++.+.+..++..+..   .|.+.         ..+-+..+...... ...+..|.+. |++..+-..|..      
T Consensus         1 ~~~~e~~~~~~~l~~~M~~Aa~~D~~a~~~~~PA~~KlklL~~V~~~l~k-~~l~~~~ld~-giL~~l~~WL~PLpDgsL   78 (145)
T 2xpp_A            1 MDPGTVLEISRSLKKRMQDILKKDNANNLEGRPATGKIENVEEISDILMS-KALQESLLDE-GILDEIKGWLEPLPDKSM   78 (145)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTC-TTTHHHHHHT-THHHHHHHHHSCCTTSCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHhhHHHHHHHHhh-HHHHHHHHHc-CHHHHHHHHhCcCCCCCC
Confidence            8999999999999888852   12111         11222223333333 3567889997 999999988874      


Q ss_pred             CChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccC-CHHHHHHHHHHHHHh
Q 044293           63 SSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS-SQETVKLASSLICSL  120 (236)
Q Consensus        63 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~L  120 (236)
                      ++..+|+..+.+|.++-   -.+..+.+.|.=..++.+-++.+ .++.++.|-..+..-
T Consensus        79 P~~~Ir~~lL~~L~~lP---I~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~W  134 (145)
T 2xpp_A           79 PNIKIRKRLLDVLKTMK---IHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKW  134 (145)
T ss_dssp             CCHHHHHHHHHHHHTSC---CCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCC---CCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHHH
Confidence            24588999889998874   33666766654444444444432 577887777666543

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=82.60  E-value=6.2  Score=37.42  Aligned_cols=144  Identities=13%  Similarity=0.088  Sum_probs=80.5

Q ss_pred             HHHHHHHhc----CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC---C
Q 044293           10 INNCVSRSQ----SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN---P   82 (236)
Q Consensus        10 i~~lv~~L~----~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~---~   82 (236)
                      ++.....|.    +++++.+..++++|.....--+  -..+... +.++.+..+|..  ++++..|+.+|..+...   +
T Consensus       191 ~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~-~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~  265 (980)
T 3ibv_A          191 VSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN--INLIVNE-PCMNLLYSFLQI--EELRCAACETMTEIVNKKMKP  265 (980)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--HHHHHCH-HHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC--HHhhhcc-hHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCCh
Confidence            455555553    3678888899999998887422  2445565 899999999865  78899999988876443   3


Q ss_pred             chhHHhhhcccHHHHHHHHhc-cCCHHHHHHHHHHHHHhccc----c-hh-------hhhhc-c-cCcHHHHHHhhcCCC
Q 044293           83 DLKQSLASMETIYRLNWIIQS-SSSQETVKLASSLICSLAML----D-KN-------KARFG-V-AGTVQVLVKAVSAPS  147 (236)
Q Consensus        83 ~~~~~i~~~g~i~~L~~lL~~-~~~~~~~~~a~~~L~~Ls~~----~-~~-------~~~i~-~-~g~i~~Lv~lL~~~~  147 (236)
                      +++..++..=.+...+..+.. ..|.+..+..+..+..+...    . ..       +.... . .+.++.++..+..++
T Consensus       266 ~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~  345 (980)
T 3ibv_A          266 LEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDY  345 (980)
T ss_dssp             HHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSS
T ss_pred             hhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCc
Confidence            344444432112222222221 22677766555444332211    0 00       01111 1 467777778877776


Q ss_pred             cHHHHHHHHHH
Q 044293          148 NPAGHHLLSSL  158 (236)
Q Consensus       148 ~~~~~~a~~aL  158 (236)
                      +++...++..+
T Consensus       346 deVs~~t~~Fw  356 (980)
T 3ibv_A          346 DETSTAVFPFL  356 (980)
T ss_dssp             HHHHHTTHHHH
T ss_pred             hhHHHHHHHHH
Confidence            65554444443

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=82.39  E-value=27  Score=33.48  Aligned_cols=171  Identities=12%  Similarity=0.098  Sum_probs=97.4

Q ss_pred             CCHHHHHHHHHHHHHHhcC-----ChHHHHHHHhccCcHHHHHhhccC-----CChHHHHHHHHHHHhhCCCC--chhHH
Q 044293           20 DSYEDQQKALQTLASITRV-----SPQYRSLLAQTDGAISTLLGLSKS-----SSPIIRTLSLSILLNLSLNP--DLKQS   87 (236)
Q Consensus        20 ~~~~~~~~a~~~L~~l~~~-----~~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~--~~~~~   87 (236)
                      .++.+|..|+..|.+....     .++.+..+.+  ..+..+...-.+     .++.++.+.+.++..++..+  +..  
T Consensus        73 ~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~--~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W--  148 (1073)
T 3gjx_A           73 QNMNTKYYGLQILENVIKTRWKILPRNQCEGIKK--YVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW--  148 (1073)
T ss_dssp             CSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH--HHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC--
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHH--HHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc--
Confidence            3555666666666654432     2334444433  344444443222     13445555555665554432  211  


Q ss_pred             hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-h--------h-----hhhhcccCcHHHHHHh----hc-CCCc
Q 044293           88 LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-K--------N-----KARFGVAGTVQVLVKA----VS-APSN  148 (236)
Q Consensus        88 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~--------~-----~~~i~~~g~i~~Lv~l----L~-~~~~  148 (236)
                         .+.++-++..++.  ++......+.+|..|+..- +        .     +..+.+  -++.++.+    |. ..++
T Consensus       149 ---p~fi~dLv~~~~~--~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~  221 (1073)
T 3gjx_A          149 ---PTFISDIVGASRT--SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNA  221 (1073)
T ss_dssp             ---TTHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCH
T ss_pred             ---cHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCH
Confidence               3567777777754  3555666777777766541 0        1     112222  14444444    43 3566


Q ss_pred             HHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHH-HHhcCCChhhHHHHHHHHHHHHcC
Q 044293          149 PAGHHLLSSLAELVQFHGNSTLAVRAGAVSELI-HLIGSTEAEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       149 ~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv-~ll~~~~~~~~~~~a~~~L~~l~~  205 (236)
                      .....++.+|..+..+-+. ..+++.+.++.++ .+|.   .++++..|+.+|..+..
T Consensus       222 ~lv~~~L~~L~~~~sWI~i-~~i~~~~ll~~L~~~~L~---~~~~r~aA~dcL~eIv~  275 (1073)
T 3gjx_A          222 PLVHATLETLLRFLNWIPL-GYIFETKLISTLIYKFLN---VPMFRNVSLKCLTEIAG  275 (1073)
T ss_dssp             HHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHHHTSS---SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCH-HHhccchHHHHHHHHhcC---ChHHHHHHHHHHHHHHh
Confidence            7778889999999887543 4566778888774 5554   35688899999998774

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=82.31  E-value=21  Score=34.64  Aligned_cols=132  Identities=11%  Similarity=0.111  Sum_probs=68.3

Q ss_pred             hHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-------hhh-----hhhcc
Q 044293           65 PIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-------KNK-----ARFGV  132 (236)
Q Consensus        65 ~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-------~~~-----~~i~~  132 (236)
                      +.++...+.++..++..+-..   .=.+.++.|+.++++  ++..++.+..+|..++.+-       ..+     ..+.+
T Consensus       110 ~~vr~kla~~la~Ia~~d~p~---~Wp~ll~~L~~~~~~--~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~  184 (1204)
T 3a6p_A          110 NHIKDALSRIVVEMIKREWPQ---HWPDMLIELDTLSKQ--GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQ  184 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence            344444455555444432100   013677888888865  3566777888888886541       111     11111


Q ss_pred             --cCcHHHHHHhhcCC-------------------CcHHHHHHHHHHHHHhcCCCChHHHHHhC--cHHHHHHHhcCCCh
Q 044293          133 --AGTVQVLVKAVSAP-------------------SNPAGHHLLSSLAELVQFHGNSTLAVRAG--AVSELIHLIGSTEA  189 (236)
Q Consensus       133 --~g~i~~Lv~lL~~~-------------------~~~~~~~a~~aL~~L~~~~~~~~~~~~~g--~i~~lv~ll~~~~~  189 (236)
                        ..+++.+..++.+.                   +..+...++.++.+...+-.. ..+.+..  .++.+..++.+   
T Consensus       185 ~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~~---  260 (1204)
T 3a6p_A          185 NMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLNE---  260 (1204)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGGC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcCC---
Confidence              13334444444321                   123445566666554443221 2233332  56666666553   


Q ss_pred             hhHHHHHHHHHHHHcC
Q 044293          190 EDLAGTSLAVLNLLAR  205 (236)
Q Consensus       190 ~~~~~~a~~~L~~l~~  205 (236)
                      ++++..|+.+|..+..
T Consensus       261 ~~lr~~A~ecL~~i~s  276 (1204)
T 3a6p_A          261 QELQLGAAECLLIAVS  276 (1204)
T ss_dssp             TTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            4577889999988875

>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}

Probab=81.87  E-value=3.7  Score=32.34  Aligned_cols=101  Identities=18%  Similarity=0.176  Sum_probs=67.4

Q ss_pred             CCChHHHHHHHHHHHhhCCCCc-hhHHhhhcccHHHHHHHHhcc-------CCHHHHHHHHHHHHHhcccchh-hhhhcc
Q 044293           62 SSSPIIRTLSLSILLNLSLNPD-LKQSLASMETIYRLNWIIQSS-------SSQETVKLASSLICSLAMLDKN-KARFGV  132 (236)
Q Consensus        62 ~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~g~i~~L~~lL~~~-------~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~  132 (236)
                      +..+..+--++++++|+-.++. ++..+........++..+...       .+..++..+++.+.|++..-.. +.   +
T Consensus       101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~  177 (253)
T 3gae_A          101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D  177 (253)
T ss_dssp             CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred             CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence            4456778889999999999999 777776554455555554221       1456777888899999875421 21   2


Q ss_pred             cCcHHHHHHhhcC---------CCcHHHHHHHHHHHHHhcCC
Q 044293          133 AGTVQVLVKAVSA---------PSNPAGHHLLSSLAELVQFH  165 (236)
Q Consensus       133 ~g~i~~Lv~lL~~---------~~~~~~~~a~~aL~~L~~~~  165 (236)
                      ......+++.+..         .+.+....++-+|++|...+
T Consensus       178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~  219 (253)
T 3gae_A          178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE  219 (253)
T ss_dssp             TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence            3445556666653         25577788888998888643

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=80.33  E-value=40  Score=31.89  Aligned_cols=66  Identities=15%  Similarity=0.110  Sum_probs=45.4

Q ss_pred             CCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC---ChhhHHHHH
Q 044293          145 APSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR---FDEGMIALT  214 (236)
Q Consensus       145 ~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~i~  214 (236)
                      +.++..+..++.+|.....+-+ -..++..+.++.+.+++.+   +++++.|+.+|..+..   .++.+..++
T Consensus       204 ~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li  272 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLL  272 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence            3567778888899888777533 3445567788888888865   4678888888887753   344444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	236
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-06
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-06
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	9e-05
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	0.001

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 5e-08
 Identities = 23/134 (17%), Positives = 60/134 (44%), Gaps = 2/134 (1%)

Query: 51  GAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLA-SMETIYRLNWIIQSSSSQET 109
            AI  L  L      ++   +  ++  LS     + ++  S + +  +   +Q+++  ET
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 110 VKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNST 169
            +  +  + +L+   +       +G +  LVK + +P +    + +++L  L+     + 
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 170 LAVR-AGAVSELIH 182
           +AVR AG + +++ 
Sbjct: 137 MAVRLAGGLQKMVA 150

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 1/105 (0%)

Query: 100 IIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLA 159
            ++    +E V+  +  +  LA    N+       T+ + V+ + +P           L 
Sbjct: 426 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485

Query: 160 ELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA 204
           EL Q    +      GA + L  L+ S   E +A  + AVL  ++
Sbjct: 486 ELAQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAVLFRMS 529

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 2/151 (1%)

Query: 9   TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIR 68
           TI   V    S   + Q      +          +  + Q  G I  L+ L +S +  ++
Sbjct: 3   TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRSPNQNVQ 61

Query: 69  TLSLSILLNLSL-NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNK 127
             +   L NL   +   K        I     +++ + + E  K  + L+ +L+  D+ K
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121

Query: 128 ARFGVAGTVQVLVKAVSAPSNPAGHHLLSSL 158
                     +  + +   S     +   S 
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSR 152

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (93), Expect = 9e-05
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 3/123 (2%)

Query: 6   VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLG-LSKSSS 64
           V  ++ + V    S++ E Q +A Q    +     Q         G I   +  L K+  
Sbjct: 11  VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 70

Query: 65  PIIRTLSLSILLNL-SLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAML 123
             I+  S   L N+ S   +  +++     I      + +S      + A   + ++A  
Sbjct: 71  SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS-LLASPHAHISEQAVWALGNIAGD 129

Query: 124 DKN 126
              
Sbjct: 130 GSA 132

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 27/208 (12%), Positives = 70/208 (33%), Gaps = 3/208 (1%)

Query: 6   VRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSS- 64
           +++ +     +  SD  ++Q  A      I     +    +    G +  L+   + +  
Sbjct: 74  LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP 133

Query: 65  PIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD 124
            +++  +   L N++     +  +        L   +  + S E  + A   + ++A   
Sbjct: 134 EMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS 193

Query: 125 -KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNS-TLAVRAGAVSELIH 182
              +        ++ ++   ++           +L+ L +        +V + A+  L  
Sbjct: 194 TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 253

Query: 183 LIGSTEAEDLAGTSLAVLNLLARFDEGM 210
           LI S + E L     A+  L     E +
Sbjct: 254 LIYSMDTETLVDACWAISYLSDGPQEAI 281

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.91
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.89
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.89
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.88
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.88
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.83
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.64
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.61
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.58
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.58
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.52
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.33
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.33
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.22
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.17
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.15
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.13
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.09
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.05
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.97
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.83
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.6
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.56
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.51
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.49
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.3
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.1
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.97
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.71
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.1
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	95.65
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	95.32
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.13
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	93.95
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	93.68
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	93.13
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	92.11
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	91.02
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	90.34
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	90.21
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	88.09

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.6e-26  Score=199.60  Aligned_cols=225  Identities=14%  Similarity=0.105  Sum_probs=198.2

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCCc
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNPD   83 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~   83 (236)
                      ...+.||.|+++|++++..++.+|+..+.+++.+ +..+..+....|+++.|+.+|++ .++++++.++.+|++++.+++
T Consensus        14 ~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~-~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~   92 (529)
T d1jdha_          14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE   92 (529)
T ss_dssp             ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch
Confidence            3467899999999999999999999999999986 45666666554789999999975 578999999999999999999


Q ss_pred             hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch-hhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293           84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK-NKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV  162 (236)
Q Consensus        84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~  162 (236)
                      ++..+.+.|++++|+.+|+++ +++++..|+++|.+++.+.+ .+..+.+.|++|+|+++|.++++.++..++++|.+++
T Consensus        93 ~~~~i~~~g~i~~Li~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  171 (529)
T d1jdha_          93 GLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA  171 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHhCCC-CHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHh
Confidence            999999999999999999998 89999999999999988765 5566778999999999999999999999999999999


Q ss_pred             cCC-CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293          163 QFH-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       163 ~~~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                      ... +++..+...|+++.++.++...+...+++.++.++.+++.+++++..+.+.|+ ++.++.+++.+++
T Consensus       172 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~-~~~L~~ll~~~~~  241 (529)
T d1jdha_         172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPSQ  241 (529)
T ss_dssp             TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTH-HHHHHTTTTSSCH
T ss_pred             hhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhh-hhhHHHHhcccch
Confidence            754 55667788999999999997765567889999999999999999999999997 8999999887664

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-23  Score=176.80  Aligned_cols=220  Identities=13%  Similarity=0.106  Sum_probs=181.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC-CchhHH
Q 044293            9 TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDLKQS   87 (236)
Q Consensus         9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~   87 (236)
                      +||.||++|++++++++..|+++|.++|.+++++|..+.+. |+||.|+++|++++++++..|+++|.+++.+ ++++..
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHT-THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            68999999999999999999999999999888999999998 9999999999999999999999999999865 567899


Q ss_pred             hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch------------------------------------------
Q 044293           88 LASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK------------------------------------------  125 (236)
Q Consensus        88 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~------------------------------------------  125 (236)
                      +.+.|+++.+++++.+..+++++..|+++|.+++..+.                                          
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            99999999999998765467777666666666543210                                          


Q ss_pred             --------------hhhh--------------------------------------------------------------
Q 044293          126 --------------NKAR--------------------------------------------------------------  129 (236)
Q Consensus       126 --------------~~~~--------------------------------------------------------------  129 (236)
                                    ++..                                                              
T Consensus       162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T d1xm9a1         162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence                          0000                                                              


Q ss_pred             --------------------------------------------------------------------------------
Q 044293          130 --------------------------------------------------------------------------------  129 (236)
Q Consensus       130 --------------------------------------------------------------------------------  129 (236)
                                                                                                      
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  321 (457)
T d1xm9a1         242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence                                                                                            


Q ss_pred             -----hcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCC-----ChhhHHHHHHHH
Q 044293          130 -----FGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGST-----EAEDLAGTSLAV  199 (236)
Q Consensus       130 -----i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~-----~~~~~~~~a~~~  199 (236)
                           +.+.|+++.|++++.+++++++..++++|.+|+.+++++..+.+ ++++.++.+|...     ...+++..++.+
T Consensus       322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~  400 (457)
T d1xm9a1         322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYT  400 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHH
Confidence                 11346677777777777777888999999999999888877654 6789999999653     245688999999


Q ss_pred             HHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCCc
Q 044293          200 LNLLAR-FDEGMIALTKTDQIVSLMVDVLKGRS  231 (236)
Q Consensus       200 L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~~  231 (236)
                      |.+++. ++++++.+++.|| ++.|+.++++.+
T Consensus       401 L~~l~~~~~~~~~~l~~~g~-i~~L~~l~~~~~  432 (457)
T d1xm9a1         401 VRNLMASQPQLAKQYFSSSM-LNNIINLCRSSA  432 (457)
T ss_dssp             HHHHHTTCTHHHHHHCCHHH-HHHHHHHHHCTT
T ss_pred             HHHHhcCCHHHHHHHHHCCC-HHHHHHHHhCCC
Confidence            999984 6789999999998 899999998654

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-22  Score=163.28  Aligned_cols=194  Identities=15%  Similarity=0.178  Sum_probs=170.0

Q ss_pred             CHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHh-hccCCChHHHHHHHHHHHhhCCCC-chhHHhhhcccHHHHH
Q 044293           21 SYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLG-LSKSSSPIIRTLSLSILLNLSLNP-DLKQSLASMETIYRLN   98 (236)
Q Consensus        21 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~i~~L~   98 (236)
                      +.+.+..|+..|..++.+ .+++..+... |+++.++. ++++++++++..|+.+|.+++.+. ..+..+.+.|++|+|+
T Consensus        30 ~~~~~~~Al~~L~~L~~~-~d~a~~l~~~-gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          30 DQQEREGALELLADLCEN-MDNAADFCQL-SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcC-HHHHHHHHHc-CCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            456778899999999965 7789999998 99999885 788999999999999999999875 4578888999999999


Q ss_pred             HHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-CCCChHHHHHhCc
Q 044293           99 WIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ-FHGNSTLAVRAGA  176 (236)
Q Consensus        99 ~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~~~~~~~~~g~  176 (236)
                      +++.++.+++++..++++|.+++.+. .++..+...|+++.|+++++++++.++..++++|.+++. +++++..+.+.|+
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  187 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM  187 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhh
Confidence            99987657899999999999998765 567778889999999999999999999999999999987 5788889999999


Q ss_pred             HHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcC
Q 044293          177 VSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTD  217 (236)
Q Consensus       177 i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g  217 (236)
                      +|.|+.++.+++ +++++.|+.+|.+|+. +++.+..+...+
T Consensus       188 v~~L~~lL~~~~-~~~~~~a~~aL~~L~~~~~~~~~~~~~~~  228 (264)
T d1xqra1         188 VQQLVALVRTEH-SPFHEHVLGALCSLVTDFPQGVRECREPE  228 (264)
T ss_dssp             HHHHHHHHTSCC-STHHHHHHHHHHHHHTTCHHHHHHHHCGG
T ss_pred             HHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence            999999998874 7899999999999996 556667766544

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.3e-23  Score=182.25  Aligned_cols=217  Identities=16%  Similarity=0.143  Sum_probs=193.6

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc-hhH
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD-LKQ   86 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~   86 (236)
                      +.|+.|+.+|++++++++..|+++|.+++.+++..+..+.+. |+||.|+.+|++++++++..++.+|.+++..+. ++.
T Consensus       101 g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  179 (529)
T d1jdha_         101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL  179 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHH-THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhc-CCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHH
Confidence            579999999999999999999999999999888888999998 999999999999999999999999999998764 577


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCC
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHG  166 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~  166 (236)
                      .+...|++++++.++.+..+...+..+++++.+++.+++++..+.+.|+++.|+.++.+++..+...+++++.+++....
T Consensus       180 ~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~  259 (529)
T d1jdha_         180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  259 (529)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcccccc
Confidence            77799999999999987756889999999999999999999999999999999999999999999999999999986544


Q ss_pred             ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhC
Q 044293          167 NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKG  229 (236)
Q Consensus       167 ~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~  229 (236)
                      ..  ....|+++.|++++.+++ .++++.++.+|.+++. +++++..+.+.+| ++.++..+..
T Consensus       260 ~~--~~~~~~i~~Lv~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~-i~~Li~~l~~  319 (529)
T d1jdha_         260 KQ--EGMEGLLGTLVQLLGSDD-INVVTCAAGILSNLTCNNYKNKMMVCQVGG-IEALVRTVLR  319 (529)
T ss_dssp             TC--SCCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTTCHHHHHHHHHTTH-HHHHHHHHHH
T ss_pred             ch--hhhhhcchhhhhhccccc-HHHHHHHHHHHHhhccchhHHHHHHHHhhh-HHHHHHHHHh
Confidence            32  223688999999998875 7899999999999985 5678888989887 8999987753

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.5e-21  Score=165.77  Aligned_cols=221  Identities=17%  Similarity=0.162  Sum_probs=186.4

Q ss_pred             hHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc-hh
Q 044293            8 ETINNCVSRSQS-DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD-LK   85 (236)
Q Consensus         8 ~~i~~lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~   85 (236)
                      +.||.|+++|++ +++++|..|+++|.+++..+++.+..+.+. |++|.|+.+|+++++++++.++++|.+++.+.+ .+
T Consensus        56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~-~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~  134 (434)
T d1q1sc_          56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG-GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR  134 (434)
T ss_dssp             TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhc-cchhhhhhccccCCHHHHHHHHHHHHHHhccchHHH
Confidence            579999999964 567899999999999998888889999998 999999999999999999999999999987654 46


Q ss_pred             HHhhhcccHHHHHHHH-----------------------------------------------hccCCHHHHHHHHHHHH
Q 044293           86 QSLASMETIYRLNWII-----------------------------------------------QSSSSQETVKLASSLIC  118 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL-----------------------------------------------~~~~~~~~~~~a~~~L~  118 (236)
                      ..+.+.|+++.++.++                                               +++ +++++..++++|.
T Consensus       135 ~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~~~~~a~~~l~  213 (434)
T d1q1sc_         135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAIS  213 (434)
T ss_dssp             HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhcc-ccchhhhHHhhhc
Confidence            6665666666665544                                               334 6788888999999


Q ss_pred             Hhcccch-hhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCC-CChHHHHHhCcHHHHHHHhcCCChhhHHHHH
Q 044293          119 SLAMLDK-NKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFH-GNSTLAVRAGAVSELIHLIGSTEAEDLAGTS  196 (236)
Q Consensus       119 ~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a  196 (236)
                      +++..+. ....+...|+++.|++++.++++.++..++++|.+++.+. +.+..+++.|+++.++.++.+.+ ++++..+
T Consensus       214 ~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~v~~~a  292 (434)
T d1q1sc_         214 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEA  292 (434)
T ss_dssp             HHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSS-HHHHHHH
T ss_pred             ccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccc-hhhhHHH
Confidence            9987764 4455667899999999999999999999999999999855 45677889999999999999874 7899999


Q ss_pred             HHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293          197 LAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       197 ~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                      +.+|.+++. +++.+..+.+.|+ ++.++.++.++++
T Consensus       293 ~~~L~~l~~~~~~~~~~i~~~~~-i~~li~~l~~~~~  328 (434)
T d1q1sc_         293 TWTMSNITAGRQDQIQQVVNHGL-VPFLVGVLSKADF  328 (434)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTC-HHHHHHHHHSSCH
T ss_pred             HHHHhhhccccchhHHHHhhhhh-HHHHHHHHhccCh
Confidence            999999996 5577788888886 8999999987764

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1e-21  Score=170.77  Aligned_cols=222  Identities=10%  Similarity=0.076  Sum_probs=192.2

Q ss_pred             HhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC-ch
Q 044293            7 RETINNCVSRSQS-DSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP-DL   84 (236)
Q Consensus         7 ~~~i~~lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~   84 (236)
                      .+.||.|+.+++. .+++++..|+++|.+++..++.....+.+. |+++.++.+|.+++.+++..++++|+|++.+. +.
T Consensus       118 ~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~-g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~  196 (503)
T d1wa5b_         118 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA-DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY  196 (503)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhC-CChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHH
Confidence            4578999999974 567899999999999999888888888887 99999999999999999999999999998865 66


Q ss_pred             hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhh-cccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc
Q 044293           85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARF-GVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ  163 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~  163 (236)
                      |..+.+.|++++|+.++.+. +.+++..++++|.+++........+ ...+++|.|+.++.+.++..+..++++|.+++.
T Consensus       197 r~~l~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~  275 (503)
T d1wa5b_         197 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD  275 (503)
T ss_dssp             HHHHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhcccccchhhcccC-CHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcc
Confidence            88999999999999999988 8999999999999999876544433 347899999999999999999999999999998


Q ss_pred             CCC-ChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh-hhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293          164 FHG-NSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD-EGMIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       164 ~~~-~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                      ... ....+++.|+++.++.++.+++ ..+...++.++.+++.+. +....+.+.|+ ++.+..++++.++
T Consensus       276 ~~~~~~~~~~~~~~~~~l~~ll~~~~-~~v~~~al~~l~nl~~~~~~~~~~~~~~~~-l~~l~~ll~~~~~  344 (503)
T d1wa5b_         276 GPQEAIQAVIDVRIPKRLVELLSHES-TLVQTPALRAVGNIVTGNDLQTQVVINAGV-LPALRLLLSSPKE  344 (503)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHHHTTCSCH
T ss_pred             CCchhhhhhhhhhhhhhhhhcccCCc-hhhhhhHHHHHHHHHHHHHHHHHhhhccch-HHHHHHHhcCCCH
Confidence            654 4567888999999999999875 788899999999999755 55666777774 8999999987653

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.8e-21  Score=167.97  Aligned_cols=222  Identities=18%  Similarity=0.178  Sum_probs=195.0

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch-h
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL-K   85 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~   85 (236)
                      .+.++.++.+|++++.+++..|+++|.+++.+++..+..+.+. |+++.|+.++.+.++.++..++++|.+++.++.. .
T Consensus       161 ~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~-~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~  239 (503)
T d1wa5b_         161 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQC-NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP  239 (503)
T ss_dssp             TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             CCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhh-cccccchhhcccCCHHHHHHHHHHHHHHhcCCccch
Confidence            4578999999999999999999999999999989999999998 9999999999999999999999999999987655 3


Q ss_pred             HHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch-hhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC
Q 044293           86 QSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK-NKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF  164 (236)
Q Consensus        86 ~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~  164 (236)
                      ......++++.++.+++++ +.+++..++++|.+++.... ....+.+.|+++.++.++.++++.+...++.+|.+++.+
T Consensus       240 ~~~~~~~~l~~l~~~l~~~-d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~  318 (503)
T d1wa5b_         240 DWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG  318 (503)
T ss_dssp             CHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHH
Confidence            4444678999999999998 89999999999999997654 446677899999999999999999999999999999986


Q ss_pred             CCC-hHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-ChhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293          165 HGN-STLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FDEGMIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       165 ~~~-~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                      .+. ...+.+.|+++.+..++.+.+ +.++..++++|.|++. +++....+.+.|+ ++.++..+..++.
T Consensus       319 ~~~~~~~~~~~~~l~~l~~ll~~~~-~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~-l~~li~~l~~~~~  386 (503)
T d1wa5b_         319 NDLQTQVVINAGVLPALRLLLSSPK-ENIKKEACWTISNITAGNTEQIQAVIDANL-IPPLVKLLEVAEY  386 (503)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTC-HHHHHHHHHHSCH
T ss_pred             HHHHHHhhhccchHHHHHHHhcCCC-HHHHHHHHHHHHHHhhccHHHHHHHHHccc-cchhHHhcccCCh
Confidence            554 445678899999999998874 7889999999999986 5678888888885 8999999987654

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=9.1e-21  Score=160.87  Aligned_cols=222  Identities=12%  Similarity=0.127  Sum_probs=189.7

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc-
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD-   83 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-   83 (236)
                      ...+.++.++.++++++++++..++++|.+++..+++.+..+... |+++.|+.++.+++++++..++.+|.+++.+++ 
T Consensus       185 ~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~  263 (434)
T d1q1sc_         185 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK-GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE  263 (434)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT-TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             hhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhc-ccchhcccccccchhhhhhchhhhhhhHHhhhhH
Confidence            346788999999999999999999999999998877778888887 999999999999999999999999999998765 


Q ss_pred             hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccc-hhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293           84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLD-KNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV  162 (236)
Q Consensus        84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~  162 (236)
                      .+..+.+.|+++.++.++++. +++++..++++|.+++... +.+..+.+.|+++.++.++.++++.++..++++|.+++
T Consensus       264 ~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~  342 (434)
T d1q1sc_         264 QTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT  342 (434)
T ss_dssp             HHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence            477888999999999999988 8999999999999998755 55677778999999999999999999999999999999


Q ss_pred             cCC--CChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC------C-hhhHHHHHhcCCcHHHHHHHhhCC
Q 044293          163 QFH--GNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR------F-DEGMIALTKTDQIVSLMVDVLKGR  230 (236)
Q Consensus       163 ~~~--~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~------~-~~~~~~i~~~g~~i~~lv~~l~~~  230 (236)
                      .+.  +....+.+.|+++.|++++...+ +++...++.+|.++..      . +..+..+.+.|| ++.+-.+..+.
T Consensus       343 ~~~~~~~~~~l~~~~~i~~L~~ll~~~d-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~-~~~i~~L~~~~  417 (434)
T d1q1sc_         343 SGGTVEQIVYLVHCGIIEPLMNLLSAKD-TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGG-LDKIEALQRHE  417 (434)
T ss_dssp             HHSCHHHHHHHHHTTCHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTS-HHHHHHHHTCS
T ss_pred             hcCCHHHHHHHHHCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCC-HHHHHHHHcCC
Confidence            754  44567889999999999998875 7788999999988753      1 235667788887 67664443333

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.2e-19  Score=152.45  Aligned_cols=178  Identities=12%  Similarity=0.085  Sum_probs=152.3

Q ss_pred             CcHHHHHhhccCCChHHHHHHHHHHHhhCCC-CchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc-cchhhh
Q 044293           51 GAISTLLGLSKSSSPIIRTLSLSILLNLSLN-PDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM-LDKNKA  128 (236)
Q Consensus        51 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~-~~~~~~  128 (236)
                      +.||.||++|++++++++..|+.+|.|+|.+ +++|..+.+.|+||+|+++|+++ +++++..|+++|.+|+. +++++.
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-NQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHH
Confidence            5799999999999999999999999999974 67899999999999999999988 89999999999999985 567889


Q ss_pred             hhcccCcHHHHHHhhcC-CCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhc--------------CCChhhHH
Q 044293          129 RFGVAGTVQVLVKAVSA-PSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIG--------------STEAEDLA  193 (236)
Q Consensus       129 ~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~--------------~~~~~~~~  193 (236)
                      .+.+.|+++.|++++.+ .++.++..++++|.+++.++..+......|..+.+..++.              ......++
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~  160 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence            99999999999999976 4667889999999999999888887776555444333321              11246788


Q ss_pred             HHHHHHHHHHcCChhhHHHHHhcCCcHHHHHHHhhC
Q 044293          194 GTSLAVLNLLARFDEGMIALTKTDQIVSLMVDVLKG  229 (236)
Q Consensus       194 ~~a~~~L~~l~~~~~~~~~i~~~g~~i~~lv~~l~~  229 (236)
                      ..++.+|.+++.+++++..+...+|+++.++.++++
T Consensus       161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~  196 (457)
T d1xm9a1         161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN  196 (457)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhc
Confidence            999999999999999999988877778999998864

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.2e-19  Score=142.35  Aligned_cols=159  Identities=18%  Similarity=0.170  Sum_probs=142.3

Q ss_pred             HhHHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccC-CChHHHHHHHHHHHhhCCCCc-
Q 044293            7 RETINNCVS-RSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKS-SSPIIRTLSLSILLNLSLNPD-   83 (236)
Q Consensus         7 ~~~i~~lv~-~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~-   83 (236)
                      .++++.++. ++++++++++..|+++|.+++.+++..+..+.+. |++|.|+.+|.+ .++.++..++.+|.+++.+.. 
T Consensus        57 ~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~-~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~  135 (264)
T d1xqra1          57 LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL-GALRKLLRLLDRDACDTVRVKALFAISCLVREQEA  135 (264)
T ss_dssp             TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             cCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchh
Confidence            467888876 6778999999999999999999999999999998 999999999964 578899999999999997764 


Q ss_pred             hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcc-cchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293           84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAM-LDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELV  162 (236)
Q Consensus        84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~  162 (236)
                      ++..+...|+++.|+++++++ +.+++..++++|.+++. +++++..+.+.|++|.|+.+|.++++.+++.|+++|.+|+
T Consensus       136 ~~~~~~~~~gi~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~  214 (264)
T d1xqra1         136 GLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV  214 (264)
T ss_dssp             HHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred             hHHHHHHhhhhhHHHHHHhcC-chHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            578888999999999999998 89999999999999875 4678888889999999999999999999999999999999


Q ss_pred             cCCCC
Q 044293          163 QFHGN  167 (236)
Q Consensus       163 ~~~~~  167 (236)
                      ...++
T Consensus       215 ~~~~~  219 (264)
T d1xqra1         215 TDFPQ  219 (264)
T ss_dssp             TTCHH
T ss_pred             hcCHH
Confidence            75433

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=7.8e-07  Score=76.90  Aligned_cols=187  Identities=10%  Similarity=0.044  Sum_probs=133.7

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhH
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQ   86 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~   86 (236)
                      .+.++.+.++++++++.+|..++..+..++..-.  .+. ... ..+|.+..+++++++.+|..++.++..++..-... 
T Consensus       163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~--~~~-~~~-~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~-  237 (588)
T d1b3ua_         163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE--LDN-VKS-EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-  237 (588)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC--HHH-HHH-THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH-
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc--HHH-HHH-HHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH-
Confidence            4456667777788999999999999999887522  122 233 67888889898889999999998888876432211 


Q ss_pred             HhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC--
Q 044293           87 SLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF--  164 (236)
Q Consensus        87 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~--  164 (236)
                       -.....++.+..++++. +..++..++.+|.+++..-.  ..+.....++.+..++.+.++.++..++.++..++..  
T Consensus       238 -~~~~~i~~~l~~~~~D~-~~~Vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~  313 (588)
T d1b3ua_         238 -DLEALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS  313 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred             -HHHHHHHHHHHHhcccc-cHHHHHHHHHhHHHHHHHhh--hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence             11233677888888776 78999999999998875432  1223356789999999999999999999999998864  


Q ss_pred             CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 044293          165 HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLL  203 (236)
Q Consensus       165 ~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l  203 (236)
                      ............+|.+...+.+.+ ..++..+..++..+
T Consensus       314 ~~~~~~~~~~~i~~~l~~~~~d~~-~~vr~~~~~~l~~~  351 (588)
T d1b3ua_         314 ADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGL  351 (588)
T ss_dssp             TTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGG
T ss_pred             hhhhhhhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHhhh
Confidence            334444445677888888887763 55555555554444

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=4.1e-07  Score=78.72  Aligned_cols=184  Identities=11%  Similarity=0.051  Sum_probs=98.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHh
Q 044293            9 TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSL   88 (236)
Q Consensus         9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i   88 (236)
                      .++.+...+++.++.+|..++..+..++..   ....+... ...+.+..++..+...+|..|+.+|..++..-.  ..-
T Consensus       403 ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~---~~~~~~~~-~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~--~~~  476 (588)
T d1b3ua_         403 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQ---LGVEFFDE-KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG--KEW  476 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH---HCGGGCCH-HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC--HHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHH---cChHhHHH-HHHHHHHhhccCCchhHHHHHHHHHHHHHHHhC--cHH
Confidence            344444444555555555555555544432   00001111 244455555555556666666666665543110  111


Q ss_pred             hhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCCh
Q 044293           89 ASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQFHGNS  168 (236)
Q Consensus        89 ~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~  168 (236)
                      .....++.+..++++. +...|..++.++..+...-.  ........+|.|++++.++.+.++..++++|..+...-+..
T Consensus       477 ~~~~i~~~l~~~~~~~-~~~~R~~~~~~l~~l~~~~~--~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~  553 (588)
T d1b3ua_         477 AHATIIPKVLAMSGDP-NYLHRMTTLFCINVLSEVCG--QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS  553 (588)
T ss_dssp             HHHHTHHHHHHTTTCS-CHHHHHHHHHHHHHHHHHHH--HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH
T ss_pred             HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcH
Confidence            1233556666666555 56666666666665544221  11122446777777777777777777778887776544332


Q ss_pred             HHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          169 TLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       169 ~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                        ..+....|.+..++++.+ .+++..|..+|..|+
T Consensus       554 --~~~~~i~~~l~~L~~D~d-~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         554 --TLQSEVKPILEKLTQDQD-VDVKYFAQEALTVLS  586 (588)
T ss_dssp             --HHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTT
T ss_pred             --hHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHh
Confidence              223345566666666653 677777777776654

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=7.6e-06  Score=63.23  Aligned_cols=131  Identities=9%  Similarity=-0.021  Sum_probs=96.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHh
Q 044293            9 TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSL   88 (236)
Q Consensus         9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i   88 (236)
                      ..+.|+.+|+++++.+|..|+..|..+..           . ..++.|+.+++++++.++..|+.+|..+......... 
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~-~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~-   86 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------Q-DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN-   86 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------H-HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH-
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------H-hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccc-
Confidence            45678999999999999999999877632           1 4689999999999999999999999998765444222 


Q ss_pred             hhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHH
Q 044293           89 ASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAE  160 (236)
Q Consensus        89 ~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~  160 (236)
                          .++.+...+-++.++.++..++.+|.+++......    ....++.+...+.+.++.++..++.++..
T Consensus        87 ----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~  150 (276)
T d1oyza_          87 ----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISV  150 (276)
T ss_dssp             ----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred             ----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchh----hHHHHHHHHHHhcCcchHHHHHHHHHHhh
Confidence                23344554433338999999999999887644221    13457778888887777777777766654

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.33  E-value=7.2e-08  Score=65.60  Aligned_cols=108  Identities=13%  Similarity=0.045  Sum_probs=81.8

Q ss_pred             cCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHH
Q 044293           61 KSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLV  140 (236)
Q Consensus        61 ~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv  140 (236)
                      +++++.+|..|+.+|..+.           ...+++|+..|++. ++.++..|+.+|.++..          .+.++.|+
T Consensus         2 ~D~~~~VR~~A~~aL~~~~-----------~~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~----------~~~~~~L~   59 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMG-----------DEAFEPLLESLSNE-DWRIRGAAAWIIGNFQD----------ERAVEPLI   59 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS----------HHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhC-----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhcch----------hhhHHHHH
Confidence            3445555555555544321           24678899999988 89999999999876532          35689999


Q ss_pred             HhhcCCCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHH
Q 044293          141 KAVSAPSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLN  201 (236)
Q Consensus       141 ~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~  201 (236)
                      ..|.+.++.++..|+.+|..+..          .++++.|..++++.+ +.++..|+.+|.
T Consensus        60 ~~l~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~-~~vr~~A~~aL~  109 (111)
T d1te4a_          60 KLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGT-GFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCC-THHHHHHHHHGG
T ss_pred             hhhccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence            99999999999999999987743          356788999998874 778888887763

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.33  E-value=1.4e-06  Score=58.94  Aligned_cols=107  Identities=13%  Similarity=0.042  Sum_probs=84.1

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHH
Q 044293           18 QSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRL   97 (236)
Q Consensus        18 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L   97 (236)
                      +++++.+|..|+++|..+            .. ..++.|+..|.++++.++..++.+|.++.          ..+.++.|
T Consensus         2 ~D~~~~VR~~A~~aL~~~------------~~-~~~~~L~~~l~d~~~~vR~~a~~~L~~~~----------~~~~~~~L   58 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRM------------GD-EAFEPLLESLSNEDWRIRGAAAWIIGNFQ----------DERAVEPL   58 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSC------------SS-TTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------SHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHh------------CH-HHHHHHHHHHcCCCHHHHHHHHHHHHhcc----------hhhhHHHH
Confidence            445555666565555432            12 46889999999999999999999997653          23578999


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHH
Q 044293           98 NWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSL  158 (236)
Q Consensus        98 ~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL  158 (236)
                      +.+|++. ++.++..|+.+|..+.          ..+.++.|..++.++++.++..|+.+|
T Consensus        59 ~~~l~d~-~~~VR~~a~~aL~~i~----------~~~~~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          59 IKLLEDD-SGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             HHHHHHC-CTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             Hhhhccc-hhHHHHHHHHHHHHhC----------ccchHHHHHHHHcCCCHHHHHHHHHHH
Confidence            9999988 8999999999998763          346789999999999999999988876

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=2.9e-05  Score=59.77  Aligned_cols=67  Identities=9%  Similarity=0.100  Sum_probs=46.5

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHh-hccCCChHHHHHHHHHHHhhCC
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLG-LSKSSSPIIRTLSLSILLNLSL   80 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~l~~   80 (236)
                      ++.++.++.+++++++.++..|+.+|..+...... ..      ..++.+.. +++++++.++..++.+|.+++.
T Consensus        49 ~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~~------~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~  116 (276)
T d1oyza_          49 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-ED------NVFNILNNMALNDKSACVRATAIESTAQRCK  116 (276)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-HH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-cc------chHHHHHHHHhcCCChhHHHHHHHHHHHHcc
Confidence            46789999999999999999999999887644221 11      22333333 3566777888888877776643

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=7.8e-06  Score=76.05  Aligned_cols=221  Identities=13%  Similarity=0.099  Sum_probs=135.6

Q ss_pred             CchHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhh---
Q 044293            2 SAPRVRETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNL---   78 (236)
Q Consensus         2 ~~~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l---   78 (236)
                      +....+..++.+++.|.+.++++|..|+++|..+...-++   ...+  ..++.|+..+.+++...+..+..+|..+   
T Consensus        39 ~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~---~~~~--~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~  113 (1207)
T d1u6gc_          39 DDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVE--TIVDTLCTNMLSDKEQLRDISSIGLKTVIGE  113 (1207)
T ss_dssp             CTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHH--HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcH---hhHH--HHHHHHHHHhcCCchhhhHHHHHHHHHHHHh
Confidence            3455678899999999999999999999999999876332   2232  4788888888777777777777666543   


Q ss_pred             -CCCCch--hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHH
Q 044293           79 -SLNPDL--KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLL  155 (236)
Q Consensus        79 -~~~~~~--~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~  155 (236)
                       .....+  -....-...++.+...+....+..++..+..+|..+.......-.-.....++.|+..+.+.+..+++.|+
T Consensus       114 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~  193 (1207)
T d1u6gc_         114 LPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTI  193 (1207)
T ss_dssp             CC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence             221111  11112234566666666655578888888888887765432111111245778888888888889999999


Q ss_pred             HHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC-hhhHHHHHhcCCcHHHHHHHhhCCcc
Q 044293          156 SSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF-DEGMIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       156 ~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                      .+|..++..-...   .-...++.+++.+...+....+..++.++..++.. +.......  ..+++.+++.++..+.
T Consensus       194 ~~l~~l~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~  266 (1207)
T d1u6gc_         194 IALGHLVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCNVDDD  266 (1207)
T ss_dssp             HHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHSSCCT
T ss_pred             HHHHHHHHHCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHH--HHHHHHHHHHhcCccH
Confidence            9999998743221   11245677777664432233334455555555532 11111111  2356666666655443

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.8e-05  Score=71.63  Aligned_cols=151  Identities=13%  Similarity=0.027  Sum_probs=106.6

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCC--ch
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNP--DL   84 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~--~~   84 (236)
                      +..++.+.+.++++++..|..|+.++..++....+.-.....  ..++.|+..++++++.+|..++++|..++..-  ..
T Consensus       394 ~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~--~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~  471 (888)
T d1qbkb_         394 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP--ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP  471 (888)
T ss_dssp             HHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSC
T ss_pred             HHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccch--hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence            445566667778889999999999999888764333222232  47888999999999999999999999876521  11


Q ss_pred             hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc--cCcHHHHHHhhcCCCcHHHHHHHHHHHHHh
Q 044293           85 KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV--AGTVQVLVKAVSAPSNPAGHHLLSSLAELV  162 (236)
Q Consensus        85 ~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~  162 (236)
                      .... -...++.++..+.+. ++.++..|+++|.+++....  ..+..  ...++.++..+..........+..++..++
T Consensus       472 ~~~~-~~~~l~~ll~~l~d~-~~~V~~~a~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~  547 (888)
T d1qbkb_         472 PDTY-LKPLMTELLKRILDS-NKRVQEAACSAFATLEEEAC--TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLA  547 (888)
T ss_dssp             HHHH-TTTHHHHHHHHHSSS-CHHHHHHHHHHHHHHHHHHT--TSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             hhhh-hhhhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            2222 246788888888887 79999999999999986432  12221  456777778877776666666666666555


Q ss_pred             c
Q 044293          163 Q  163 (236)
Q Consensus       163 ~  163 (236)
                      .
T Consensus       548 ~  548 (888)
T d1qbkb_         548 D  548 (888)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=0.00013  Score=61.00  Aligned_cols=220  Identities=13%  Similarity=0.035  Sum_probs=149.1

Q ss_pred             hHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChH---HHHHHHhccC-cHHHHHhhccCCChHHHHHHHHHHHhhCCCC
Q 044293            8 ETINNCVSRSQ-SDSYEDQQKALQTLASITRVSPQ---YRSLLAQTDG-AISTLLGLSKSSSPIIRTLSLSILLNLSLNP   82 (236)
Q Consensus         8 ~~i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~---~~~~i~~~~g-~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~   82 (236)
                      ..+..++.+|. .+.+++.++.+..+..+..+++.   .-..+.+.+. .-+++..++..++......+..++..++...
T Consensus        74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~  153 (477)
T d1ho8a_          74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  153 (477)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence            35777888886 46688888888888887766442   2233443322 2245556676666666777777777777654


Q ss_pred             chhHHhhh-cccHHHHHHHH-hccCCHHHHHHHHHHHHHhcccchhhhhhcc--cCcHHHHHHhhcCC------------
Q 044293           83 DLKQSLAS-METIYRLNWII-QSSSSQETVKLASSLICSLAMLDKNKARFGV--AGTVQVLVKAVSAP------------  146 (236)
Q Consensus        83 ~~~~~i~~-~g~i~~L~~lL-~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~------------  146 (236)
                      .......+ ..-...+...+ ..+ +.+...-++..+..+...+..|..+-.  ...+++|+++|+..            
T Consensus       154 ~~~~~~~e~l~~~~~~l~~l~~~~-~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~  232 (477)
T d1ho8a_         154 LHNVKLVEKLLKNNNLINILQNIE-QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT  232 (477)
T ss_dssp             TCCHHHHHHHHHCHHHHHHHHCTT-CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred             ccccchHHHHHHhhHHHHHhhccc-ccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcc
Confidence            33222221 11122233333 444 778888888889999999999988753  66788888888641            


Q ss_pred             -----CcHHHHHHHHHHHHHhcCCCChHHHHHh--CcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh------hHHHH
Q 044293          147 -----SNPAGHHLLSSLAELVQFHGNSTLAVRA--GAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE------GMIAL  213 (236)
Q Consensus       147 -----~~~~~~~a~~aL~~L~~~~~~~~~~~~~--g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~------~~~~i  213 (236)
                           +.+...+++-+++-|+.+++....+.+.  +.++.++++++....+.+...++.+|.|++..+.      ....+
T Consensus       233 ~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~  312 (477)
T d1ho8a_         233 NSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLL  312 (477)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHH
T ss_pred             cCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence                 1256789999999999988888888775  4599999999877667788899999999986521      24446


Q ss_pred             HhcCCcHHHHHHHhhCC
Q 044293          214 TKTDQIVSLMVDVLKGR  230 (236)
Q Consensus       214 ~~~g~~i~~lv~~l~~~  230 (236)
                      +.++  +++++..|+.+
T Consensus       313 v~~~--~l~~l~~L~~r  327 (477)
T d1ho8a_         313 LLGN--ALPTVQSLSER  327 (477)
T ss_dssp             HHHC--HHHHHHHHHSS
T ss_pred             HHcc--hhHHHHHHhcC
Confidence            6655  35667777654

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=4.3e-05  Score=62.66  Aligned_cols=214  Identities=12%  Similarity=0.049  Sum_probs=131.7

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc----
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD----   83 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~----   83 (236)
                      ...+.+...+.+++++++..++..|..++...+..-...... ...+.+...+.+.+++++..++.++..++....    
T Consensus       216 ~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~  294 (458)
T d1ibrb_         216 FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP-ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAI  294 (458)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTT-THHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566677788899999999999999886544321111121 334445566677788888888888777643110    


Q ss_pred             -------------hhH----HhhhcccHHHHHHHHhccC------CHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHH
Q 044293           84 -------------LKQ----SLASMETIYRLNWIIQSSS------SQETVKLASSLICSLAMLDKNKARFGVAGTVQVLV  140 (236)
Q Consensus        84 -------------~~~----~i~~~g~i~~L~~lL~~~~------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv  140 (236)
                                   ...    ...-...++.+...+....      +...+..+..++..++.....  .+. ...++.+.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~-~~l~~~i~  371 (458)
T d1ibrb_         295 EASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIK  371 (458)
T ss_dssp             HHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHH
T ss_pred             hhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--hhh-hHHHHHHH
Confidence                         000    0011223444444443211      234777788888877764421  121 34667777


Q ss_pred             HhhcCCCcHHHHHHHHHHHHHhcCCCChH-HHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChhhHHHHHhcCCc
Q 044293          141 KAVSAPSNPAGHHLLSSLAELVQFHGNST-LAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDEGMIALTKTDQI  219 (236)
Q Consensus       141 ~lL~~~~~~~~~~a~~aL~~L~~~~~~~~-~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~~  219 (236)
                      ..+.+++...++.++.+|+.++....... .-.-...+|.++..+++. ++.++..|+.+|..++..-.  +...... .
T Consensus       372 ~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~-~~~VR~~a~~~l~~i~~~~~--~~~~~~~-~  447 (458)
T d1ibrb_         372 EHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLP--EAAINDV-Y  447 (458)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHGG--GGCCSTT-T
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhh--cccchhh-H
Confidence            88888888999999999999886432211 111246789999999987 47899999999998874211  1111122 3


Q ss_pred             HHHHHHHhhC
Q 044293          220 VSLMVDVLKG  229 (236)
Q Consensus       220 i~~lv~~l~~  229 (236)
                      +++++..|-+
T Consensus       448 l~~ll~~ll~  457 (458)
T d1ibrb_         448 LAPLLQCLIE  457 (458)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            6777775544

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=0.00012  Score=61.22  Aligned_cols=185  Identities=13%  Similarity=0.224  Sum_probs=126.2

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhc-cCcHHHHHhhccC-----------------CChHHHHHHHHHHHhhC
Q 044293           18 QSDSYEDQQKALQTLASITRVSPQYRSLLAQT-DGAISTLLGLSKS-----------------SSPIIRTLSLSILLNLS   79 (236)
Q Consensus        18 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-~g~i~~Lv~lL~~-----------------~~~~~~~~a~~~L~~l~   79 (236)
                      ..++.+.+.-|+..++.+... +..|+.|... ...++.|++.|+.                 ....++-.++-+++.|+
T Consensus       175 ~~~~~~~~~i~v~~lq~llr~-~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLS  253 (477)
T d1ho8a_         175 NIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLT  253 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHT
T ss_pred             cccccchHHHHHHHHHHHhcC-ccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHH
Confidence            466777777788889988886 6788887432 1457777777643                 12366788999999999


Q ss_pred             CCCchhHHhhhc--ccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch--h----hhhhccc------------------
Q 044293           80 LNPDLKQSLASM--ETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK--N----KARFGVA------------------  133 (236)
Q Consensus        80 ~~~~~~~~i~~~--g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~--~----~~~i~~~------------------  133 (236)
                      .+++....+.+.  +.|+.++++++...-+.+.+-+..+|.|+.....  +    ...+...                  
T Consensus       254 F~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Ded  333 (477)
T d1ho8a_         254 FNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEE  333 (477)
T ss_dssp             TSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHH
T ss_pred             cCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHH
Confidence            988887777654  5699999999866467888888888888865421  1    1111122                  


Q ss_pred             ----------------------------------------------------------CcHHHHHHhhcC----------
Q 044293          134 ----------------------------------------------------------GTVQVLVKAVSA----------  145 (236)
Q Consensus       134 ----------------------------------------------------------g~i~~Lv~lL~~----------  145 (236)
                                                                                ..+..|+++|.+          
T Consensus       334 l~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s  413 (477)
T d1ho8a_         334 LRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAK  413 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSH
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccC
Confidence                                                                      233444444431          


Q ss_pred             CCcHHHHHHHHHHHHHhcC-CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          146 PSNPAGHHLLSSLAELVQF-HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       146 ~~~~~~~~a~~aL~~L~~~-~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                      .++.+...||.=++.++.+ |++|..+-+.|+=..++++|.+.+ ++++..|+.++.-+.
T Consensus       414 ~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d-~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         414 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSD-SRVKYEALKATQAII  472 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSS-HHHHHHHHHHHHHHH
T ss_pred             CCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence            1122333455556777874 566666777899999999998885 899999999887654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=5.1e-05  Score=70.38  Aligned_cols=191  Identities=12%  Similarity=0.076  Sum_probs=122.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCh-HHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCchhHH
Q 044293            9 TINNCVSRSQSDSYEDQQKALQTLASITRVSP-QYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDLKQS   87 (236)
Q Consensus         9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~   87 (236)
                      .|..|++.++++|++.|..|+.-|.+....+. ...... .. .+++.|+.+|+..++++|..|+.+|..+...-...  
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~-~~-~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~--   79 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDS-ER-KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--   79 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTH-HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHH-HH-HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh--
Confidence            57788899999999999999988877553321 111111 22 57889999999999999999999999887653321  


Q ss_pred             hhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhccc----chhhhhhc--ccCcHHHHHHhhcC-CCcHHHHHHHHHHHH
Q 044293           88 LASMETIYRLNWIIQSSSSQETVKLASSLICSLAML----DKNKARFG--VAGTVQVLVKAVSA-PSNPAGHHLLSSLAE  160 (236)
Q Consensus        88 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~----~~~~~~i~--~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~  160 (236)
                      .. ...++.|+..+.++ +.+.+..+..+|..+...    ........  -...++.+...+.+ .+..++..++.+|..
T Consensus        80 ~~-~~l~~~L~~~l~~~-~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          80 QV-ETIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD  157 (1207)
T ss_dssp             HH-HHHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             hH-HHHHHHHHHHhcCC-chhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            11 34667777777766 677777777777655321    11111111  12344445554444 355678888888888


Q ss_pred             HhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293          161 LVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       161 L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~  206 (236)
                      +......--.-.....++.++..+.+.. ..+++.|+.+|..++..
T Consensus       158 l~~~~g~~l~~~~~~il~~l~~~l~~~~-~~vR~~A~~~l~~l~~~  202 (1207)
T d1u6gc_         158 MLSRQGGLLVNFHPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMS  202 (1207)
T ss_dssp             HHHHTCSSCTTTHHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTT
T ss_pred             HHHHhhHhhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHH
Confidence            7653221100012245677777777764 67899999999998753

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.00024  Score=64.04  Aligned_cols=181  Identities=10%  Similarity=0.071  Sum_probs=116.8

Q ss_pred             CHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch--hHHhhhcccHHHH
Q 044293           21 SYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL--KQSLASMETIYRL   97 (236)
Q Consensus        21 ~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~--~~~i~~~g~i~~L   97 (236)
                      +.+....++..+..+... .......+... ..++.+...+++.+++++..|..++..++.+-..  +..+  ...++.+
T Consensus       635 ~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~-~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l--~~~~~~l  711 (888)
T d1qbkb_         635 DKDFMIVALDLLSGLAEGLGGNIEQLVARS-NILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI--ADFMPIL  711 (888)
T ss_dssp             CTHHHHHHHHHHHHHHHHHTTTTHHHHHTS-CHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhhhHh-hHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHH
Confidence            444555566666655532 12233444444 6788888889999999999999988887654322  2222  3477788


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc--cCcHHHHHHhhcCCC--cHHHHHHHHHHHHHhcCCCChHHHHH
Q 044293           98 NWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV--AGTVQVLVKAVSAPS--NPAGHHLLSSLAELVQFHGNSTLAVR  173 (236)
Q Consensus        98 ~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~--~~~~~~a~~aL~~L~~~~~~~~~~~~  173 (236)
                      ..-|++. ..+++.+|++++..++..-.  ..+..  ...++.|++++++++  ..++++++.+|+.++......-.-.-
T Consensus       712 ~~~L~~~-~~~v~~~a~~~ig~ia~~~~--~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l  788 (888)
T d1qbkb_         712 GTNLNPE-FISVCNNATWAIGEISIQMG--IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPML  788 (888)
T ss_dssp             HHTCCGG-GHHHHHHHHHHHHHHHHHTG--GGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGG
T ss_pred             HHHhCcC-CHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhH
Confidence            8888777 78999999999998876432  22322  578999999998764  34779999999998874322110001


Q ss_pred             hCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC-Ch
Q 044293          174 AGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR-FD  207 (236)
Q Consensus       174 ~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~-~~  207 (236)
                      ...++.++..|...++.+-.+.+...++.+.. +|
T Consensus       789 ~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p  823 (888)
T d1qbkb_         789 QQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP  823 (888)
T ss_dssp             GGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCc
Confidence            34567777777553223345677777776653 44

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.0017  Score=51.13  Aligned_cols=216  Identities=14%  Similarity=0.124  Sum_probs=154.1

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHH----HHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc
Q 044293            8 ETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYR----SLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD   83 (236)
Q Consensus         8 ~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~----~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~   83 (236)
                      +.+..|+.-|..-+-+.|..++....++.+...+.+    +.+...+.++..|+.--.  ++++--.+-..|..+..++.
T Consensus        69 d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLREcik~e~  146 (330)
T d1upka_          69 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIRHEP  146 (330)
T ss_dssp             SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHTSHH
T ss_pred             ChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHHHHhhHH
Confidence            355666666766777777777777777776543333    334444455555555443  44454566678888999998


Q ss_pred             hhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHh-cccchhhhhhcc---cCcHHHHHHhhcCCCcHHHHHHHHHHH
Q 044293           84 LKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSL-AMLDKNKARFGV---AGTVQVLVKAVSAPSNPAGHHLLSSLA  159 (236)
Q Consensus        84 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~L-s~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~aL~  159 (236)
                      -...+........+.+.++.+ +-++...|..++..+ +.++.....+..   .-++...-++|.++|.-+++.++..|+
T Consensus       147 lak~iL~s~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLg  225 (330)
T d1upka_         147 LAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG  225 (330)
T ss_dssp             HHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            878888888899999999988 899999999999965 555544444443   356677778999999999999999999


Q ss_pred             HHhcCCCChHHHHHh----CcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh---hHHHHHhcCCcHHHHHHHhhC
Q 044293          160 ELVQFHGNSTLAVRA----GAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE---GMIALTKTDQIVSLMVDVLKG  229 (236)
Q Consensus       160 ~L~~~~~~~~~~~~~----g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~---~~~~i~~~g~~i~~lv~~l~~  229 (236)
                      .+-..+.|...|.+.    .-+..++.+|++.+ ..++-.|.-++.....+|.   .-..+....  =..|++.+++
T Consensus       226 elLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~s-k~Iq~EAFhVFKvFVANpnKp~~I~~IL~~N--r~kLl~fl~~  299 (330)
T d1upka_         226 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS-RNIQFEAFHVFKVFVANPNKTQPILDILLKN--QAKLIEFLSK  299 (330)
T ss_dssp             HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHCSSCCHHHHHHHHHT--HHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCch-hhHHHHhhhHhhhhhcCCCCCHHHHHHHHHh--HHHHHHHHHh
Confidence            999999998877553    45788999999874 7788888888887766543   222233222  2566666653

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.0023  Score=51.88  Aligned_cols=217  Identities=9%  Similarity=0.026  Sum_probs=133.2

Q ss_pred             HHhHHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCChHHH--HHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q 044293            6 VRETINNCVSRSQS--DSYEDQQKALQTLASITRVSPQYR--SLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLN   81 (236)
Q Consensus         6 ~~~~i~~lv~~L~~--~~~~~~~~a~~~L~~l~~~~~~~~--~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~   81 (236)
                      ....++.++..+.+  .+.+++..++.++..+........  .... . ...+.+..++.+++++++..++.++..++..
T Consensus       169 ~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~  246 (458)
T d1ibrb_         169 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-H-FIMQVVCEATQCPDTRVRVAALQNLVKIMSL  246 (458)
T ss_dssp             HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH-H-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHH-H-HhHhhHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            34567778888864  457789999999988876543321  2222 2 4677788888889999999999999887653


Q ss_pred             Cc-h-hHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhh--------------hh---c----ccCcHHH
Q 044293           82 PD-L-KQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKA--------------RF---G----VAGTVQV  138 (236)
Q Consensus        82 ~~-~-~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~--------------~i---~----~~g~i~~  138 (236)
                      -. . ...+ .....+.+...+++. +++++..+...+..++.......              .+   .    ....++.
T Consensus       247 ~~~~~~~~l-~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  324 (458)
T d1ibrb_         247 YYQYMETYM-GPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI  324 (458)
T ss_dssp             CGGGCTTTT-TTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHH-HHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhh
Confidence            22 1 1222 222333344555555 78899888888887764321000              00   0    0223344


Q ss_pred             HHHhhcC-------CCcHHHHHHHHHHHHHhcCCCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCCh--hh
Q 044293          139 LVKAVSA-------PSNPAGHHLLSSLAELVQFHGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFD--EG  209 (236)
Q Consensus       139 Lv~lL~~-------~~~~~~~~a~~aL~~L~~~~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~--~~  209 (236)
                      +...+..       .+...+..+..++..++.......  . ...++.+.+.+++++ ...++.|+.+|..++...  +.
T Consensus       325 l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~--~-~~l~~~i~~~l~s~~-~~~r~aal~~l~~i~~~~~~~~  400 (458)
T d1ibrb_         325 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI--V-PHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQ  400 (458)
T ss_dssp             HHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH--H-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCTTT
T ss_pred             HHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh--h-hHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCHhH
Confidence            4454432       122467778888888876433221  1 235667777777764 678889999999998643  32


Q ss_pred             HHHHHhcCCcHHHHHHHhhCCcc
Q 044293          210 MIALTKTDQIVSLMVDVLKGRSM  232 (236)
Q Consensus       210 ~~~i~~~g~~i~~lv~~l~~~~~  232 (236)
                      ...+..  .+++.++..+++.++
T Consensus       401 ~~~~l~--~i~~~l~~~l~d~~~  421 (458)
T d1ibrb_         401 LKPLVI--QAMPTLIELMKDPSV  421 (458)
T ss_dssp             TCTTTT--THHHHHHHGGGCSCH
T ss_pred             HHHHHH--HHHHHHHHHhCCCCH
Confidence            233333  257888888876654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=0.0035  Score=54.91  Aligned_cols=191  Identities=14%  Similarity=0.065  Sum_probs=116.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhhccCCC-hHHHHHHHHHHHhhCCCCch--h
Q 044293           10 INNCVSRSQSDSYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGLSKSSS-PIIRTLSLSILLNLSLNPDL--K   85 (236)
Q Consensus        10 i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~--~   85 (236)
                      -..+++.+.++++.++..++.++..++..+ +.+++     +..++.|+..+.+++ ...+..++.++..++..-..  .
T Consensus        97 k~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w-----peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~  171 (861)
T d2bpta1          97 KTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW-----PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ  171 (861)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC-----HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCch-----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence            355677778888899998989998887541 11111     246778888877655 45677788888877643222  1


Q ss_pred             HHhh-hcccHHHHHHHHhcc-CCHHHHHHHHHHHHHhcccchhhh--hhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293           86 QSLA-SMETIYRLNWIIQSS-SSQETVKLASSLICSLAMLDKNKA--RFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL  161 (236)
Q Consensus        86 ~~i~-~~g~i~~L~~lL~~~-~~~~~~~~a~~~L~~Ls~~~~~~~--~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L  161 (236)
                      ..+. -...+..++..+.+. .+.+++..+..++.++...-....  .......++.+...+.++++.++..++.++..+
T Consensus       172 ~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i  251 (861)
T d2bpta1         172 ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKI  251 (861)
T ss_dssp             TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHH
Confidence            1111 123444455544432 268899999999988765432111  111245677888888889999999999999988


Q ss_pred             hcC-CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCC
Q 044293          162 VQF-HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARF  206 (236)
Q Consensus       162 ~~~-~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~  206 (236)
                      +.. ++.-......-..+.+.....+. ++.+...++..+..++..
T Consensus       252 ~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~  296 (861)
T d2bpta1         252 MSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEE  296 (861)
T ss_dssp             HHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHH
Confidence            863 22222222222222233333444 467778888887776643

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.0041  Score=54.40  Aligned_cols=147  Identities=10%  Similarity=0.050  Sum_probs=91.8

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHhhCCCC--chhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhh-hh
Q 044293           54 STLLGLSKSSSPIIRTLSLSILLNLSLNP--DLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKA-RF  130 (236)
Q Consensus        54 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~-~i  130 (236)
                      ..++..+.++++.++..++.++..++..+  .++.    ...++.|+..+++..+...+..++.+|..++..-.... .+
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w----peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~  173 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAW----PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQAL  173 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC----HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCch----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            34455666777888888888888776532  1110    24678888888876456778888888888875433221 11


Q ss_pred             c-c-cCcHHHHHHhhcC--CCcHHHHHHHHHHHHHhcCCCCh--HHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHc
Q 044293          131 G-V-AGTVQVLVKAVSA--PSNPAGHHLLSSLAELVQFHGNS--TLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLA  204 (236)
Q Consensus       131 ~-~-~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~L~~~~~~~--~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~  204 (236)
                      . . ...++.+++.+.+  .+..++..++.++.++...-...  ........++.+...+++.+ ++++..++.+|..++
T Consensus       174 ~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~i~  252 (861)
T d2bpta1         174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED-IEVQAAAFGCLCKIM  252 (861)
T ss_dssp             GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence            1 1 2344445554543  45678889999998877642211  11122335566777777764 678888888888776


Q ss_pred             C
Q 044293          205 R  205 (236)
Q Consensus       205 ~  205 (236)
                      .
T Consensus       253 ~  253 (861)
T d2bpta1         253 S  253 (861)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.97  E-value=0.00038  Score=53.03  Aligned_cols=19  Identities=5%  Similarity=0.062  Sum_probs=11.8

Q ss_pred             HHHHHHhcCCChhhHHHHHH
Q 044293          178 SELIHLIGSTEAEDLAGTSL  197 (236)
Q Consensus       178 ~~lv~ll~~~~~~~~~~~a~  197 (236)
                      +.++..|.+.+ +++++.++
T Consensus       212 ~~ll~~L~D~d-~~VR~aA~  230 (233)
T d1lrva_         212 LEALRELDEPD-PEVRLAIA  230 (233)
T ss_dssp             HHHHHHCCCCC-HHHHHHHH
T ss_pred             HHHHHHhCCCC-HHHHHHHH
Confidence            55667776653 66766654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.01  Score=51.98  Aligned_cols=190  Identities=13%  Similarity=0.089  Sum_probs=116.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhccCcHHHHHhhccCCC--hHHHHHHHHHHHhhCCCCchh
Q 044293            9 TINNCVSRSQSDSYEDQQKALQTLASITRVS-PQYRSLLAQTDGAISTLLGLSKSSS--PIIRTLSLSILLNLSLNPDLK   85 (236)
Q Consensus         9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~   85 (236)
                      ....+++.+.+++ ..+..++.++..++..+ +.++     -++.+|.|++.+.+++  +..+..++.++..++..-...
T Consensus        91 ik~~ll~~l~~~~-~~~~~~a~~i~~i~~~~~p~~~-----Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~  164 (876)
T d1qgra_          91 VKNYVLHTLGTET-YRPSSASQCVAGIACAEIPVNQ-----WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE  164 (876)
T ss_dssp             HHHHHHHHTTTCC-SSSCHHHHHHHHHHHHHGGGTC-----CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHCCccc-----cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHH
Confidence            3455667776655 35555667777776531 1111     1478999998886544  567778888888876432221


Q ss_pred             HH-hhhcccHHHHHHHHhccC-CHHHHHHHHHHHHHhcccchhhh--hhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 044293           86 QS-LASMETIYRLNWIIQSSS-SQETVKLASSLICSLAMLDKNKA--RFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAEL  161 (236)
Q Consensus        86 ~~-i~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~Ls~~~~~~~--~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L  161 (236)
                      .. -.....++.++..+.+.. +.+++..+..++.+.........  .....-.++.+...+.+++++++..++.+|..+
T Consensus       165 ~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l  244 (876)
T d1qgra_         165 QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI  244 (876)
T ss_dssp             HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            11 112457888888887542 57888888888887655432111  111233566677777888888999999999988


Q ss_pred             hcC-CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293          162 VQF-HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       162 ~~~-~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~  205 (236)
                      ... ++.-.........+.+...+.+. ..++...++..+..++.
T Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~  288 (876)
T d1qgra_         245 MSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             HHHSGGGCHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHH
Confidence            863 33323333334455566666655 35676777776666653

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.1  Score=45.40  Aligned_cols=192  Identities=13%  Similarity=0.053  Sum_probs=115.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCch----
Q 044293            9 TINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPDL----   84 (236)
Q Consensus         9 ~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~----   84 (236)
                      .++.+...+++++++++..++..+..++...++.-...... ...+.+...+.+.+++++..+...+..++.....    
T Consensus       218 i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  296 (876)
T d1qgra_         218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP-ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE  296 (876)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTT-THHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566678899999999999998887655443333333 4566666677777777777777666555431110    


Q ss_pred             -------------h----HHhhhcccHHHHHHHHhccC------CHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHH
Q 044293           85 -------------K----QSLASMETIYRLNWIIQSSS------SQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVK  141 (236)
Q Consensus        85 -------------~----~~i~~~g~i~~L~~lL~~~~------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~  141 (236)
                                   .    ........++.+...+....      +...+..|..++..++....  ..+. ...++.+..
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~--~~~~-~~~~~~i~~  373 (876)
T d1qgra_         297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLPFIKE  373 (876)
T ss_dssp             HHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHH
T ss_pred             hhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhh--hhhh-hhhHHHHHH
Confidence                         0    00111223344444443221      22366667777777765432  1111 234555566


Q ss_pred             hhcCCCcHHHHHHHHHHHHHhcCCCChH-HHHHhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcC
Q 044293          142 AVSAPSNPAGHHLLSSLAELVQFHGNST-LAVRAGAVSELIHLIGSTEAEDLAGTSLAVLNLLAR  205 (236)
Q Consensus       142 lL~~~~~~~~~~a~~aL~~L~~~~~~~~-~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~  205 (236)
                      .+.+.+...++.++.++..+........ .-.-...++.++..+.+. ++.++..++.++..++.
T Consensus       374 ~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~-~~~vr~~a~~~l~~~~~  437 (876)
T d1qgra_         374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICE  437 (876)
T ss_dssp             HTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             hhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCC-ccHHHHHHHHHHHHHHH
Confidence            6667777788888888877765443222 222346788899999887 47888889988888764

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.65  E-value=0.19  Score=39.78  Aligned_cols=139  Identities=12%  Similarity=0.038  Sum_probs=95.7

Q ss_pred             hcccHHHHHHHHhc---------c-CCHHHHHHHHHHHHHhcccchhhhhhc-ccCcHHHHHHhhcCCCcHHHHHHHHHH
Q 044293           90 SMETIYRLNWIIQS---------S-SSQETVKLASSLICSLAMLDKNKARFG-VAGTVQVLVKAVSAPSNPAGHHLLSSL  158 (236)
Q Consensus        90 ~~g~i~~L~~lL~~---------~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~aL  158 (236)
                      ..+|+..|+.+|..         + .+......+..+|..+..+......+. ..+++..++..|.+.++.++..|+..|
T Consensus        43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL  122 (343)
T d2bnxa1          43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  122 (343)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHH
Confidence            34566666666642         1 024456678888988888776665555 489999999999999999999999999


Q ss_pred             HHHhcCCC---ChHHHH----------HhCcHHHHHHHhcCCChhhHHHHHHHHHHHHcCChh-------hHHHHHhcCC
Q 044293          159 AELVQFHG---NSTLAV----------RAGAVSELIHLIGSTEAEDLAGTSLAVLNLLARFDE-------GMIALTKTDQ  218 (236)
Q Consensus       159 ~~L~~~~~---~~~~~~----------~~g~i~~lv~ll~~~~~~~~~~~a~~~L~~l~~~~~-------~~~~i~~~g~  218 (236)
                      ..+|..++   +...+.          +.+-+.++++-++.++..+....++..+..+..+++       .|.++...| 
T Consensus       123 ~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~G-  201 (343)
T d2bnxa1         123 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-  201 (343)
T ss_dssp             HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-
T ss_pred             HHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCC-
Confidence            99997532   232222          235677888888776545666666666666665432       477788875 


Q ss_pred             cHHHHHHHhhCC
Q 044293          219 IVSLMVDVLKGR  230 (236)
Q Consensus       219 ~i~~lv~~l~~~  230 (236)
                       +..+++-|++.
T Consensus       202 -l~~il~~l~~~  212 (343)
T d2bnxa1         202 -LHQVLQELREI  212 (343)
T ss_dssp             -HHHHHHHHTTC
T ss_pred             -hHHHHHHHHcc
Confidence             57777777653

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.32  E-value=0.48  Score=37.30  Aligned_cols=176  Identities=14%  Similarity=0.150  Sum_probs=111.8

Q ss_pred             HHHHhcCC-CHHHHHHHHHHHHH-HhcCChHHHHHHHhccCcHHHHHhhccC----C-------ChHHHHHHHHHHHhhC
Q 044293           13 CVSRSQSD-SYEDQQKALQTLAS-ITRVSPQYRSLLAQTDGAISTLLGLSKS----S-------SPIIRTLSLSILLNLS   79 (236)
Q Consensus        13 lv~~L~~~-~~~~~~~a~~~L~~-l~~~~~~~~~~i~~~~g~i~~Lv~lL~~----~-------~~~~~~~a~~~L~~l~   79 (236)
                      .|..|++. ..+.....+.-|+. |-.+...+-+.| .. +|+..|+.+|..    +       +...+..++.+|..+.
T Consensus         7 yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~-~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm   84 (343)
T d2bnxa1           7 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GA-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   84 (343)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HH-HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-Hh-ccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence            34555443 23333344555533 334344555667 45 788889988731    1       2456778899999999


Q ss_pred             CCCchhHHhh-hcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccch---h----------hhhhcccCcHHHHHHhhcC
Q 044293           80 LNPDLKQSLA-SMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDK---N----------KARFGVAGTVQVLVKAVSA  145 (236)
Q Consensus        80 ~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~---~----------~~~i~~~g~i~~Lv~lL~~  145 (236)
                      .+..+...+. ..+.+..++..|.+. .+.++..|..+|..+|..+.   .          .....+.+-..++++.+..
T Consensus        85 n~~~G~~~vl~~~~~i~~l~~~L~s~-~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~  163 (343)
T d2bnxa1          85 NNKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  163 (343)
T ss_dssp             SSHHHHHHHHHSSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             ccHHHHHHHHcChHHHHHHHHccCCC-chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhc
Confidence            9888866665 678999999999988 89999999999998885431   1          1122346778889988877


Q ss_pred             CC-cHHHHHHHHHHHHHhcCCCC-------hHHHHHhCcHHHHHHHhcCCChhhH
Q 044293          146 PS-NPAGHHLLSSLAELVQFHGN-------STLAVRAGAVSELIHLIGSTEAEDL  192 (236)
Q Consensus       146 ~~-~~~~~~a~~aL~~L~~~~~~-------~~~~~~~g~i~~lv~ll~~~~~~~~  192 (236)
                      ++ .+....++..+-.+..+.+.       |..+...|..+ ++.-|...+++.+
T Consensus       164 ~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~-il~~l~~~~~~~L  217 (343)
T d2bnxa1         164 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELREIENEDM  217 (343)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH-HHHHHTTCCCHHH
T ss_pred             cccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHH-HHHHHHccCChHH
Confidence            63 45555555555666665554       34444556554 5555554333443

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.51  Score=36.61  Aligned_cols=185  Identities=14%  Similarity=0.056  Sum_probs=134.0

Q ss_pred             HHHHHHhccCcHHHHHhhccCCChHHHHHHHHHHHhhCCCCc-hh----HHhhh-cccHHHHHHHHhccCCHHHHHHHHH
Q 044293           42 YRSLLAQTDGAISTLLGLSKSSSPIIRTLSLSILLNLSLNPD-LK----QSLAS-METIYRLNWIIQSSSSQETVKLASS  115 (236)
Q Consensus        42 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~----~~i~~-~g~i~~L~~lL~~~~~~~~~~~a~~  115 (236)
                      ..+.+... +.+..|+.-|..-+-+.+..++.+..++-.... ++    ..+.. ...+..|+.--   +++++-..+-.
T Consensus        61 L~~e~~~~-d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy---e~~eiAl~~G~  136 (330)
T d1upka_          61 LAQELYNS-GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY---ESPEIALNCGI  136 (330)
T ss_dssp             HHHHHHHH-SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG---GSTTTHHHHHH
T ss_pred             HHHHHHHh-ChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc---CCcchhhhhhH
Confidence            34556666 999999999988888999999888888766543 33    23332 23333333332   26788888889


Q ss_pred             HHHHhcccchhhhhhcccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhc-CCCChHHHHHhC---cHHHHHHHhcCCChhh
Q 044293          116 LICSLAMLDKNKARFGVAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQ-FHGNSTLAVRAG---AVSELIHLIGSTEAED  191 (236)
Q Consensus       116 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-~~~~~~~~~~~g---~i~~lv~ll~~~~~~~  191 (236)
                      .|..+...+.....+.....+..++++++.++.++...|..++..+-. ++.....+...+   .+...-++|.+++ --
T Consensus       137 mLREcik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~N-YV  215 (330)
T d1upka_         137 MLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSEN-YV  215 (330)
T ss_dssp             HHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSS-HH
T ss_pred             HHHHHHhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCc-hH
Confidence            999999999888888888889999999999999999999999977654 554455555443   4556677887774 67


Q ss_pred             HHHHHHHHHHHHcCChhhHHHH---HhcCCcHHHHHHHhhCCc
Q 044293          192 LAGTSLAVLNLLARFDEGMIAL---TKTDQIVSLMVDVLKGRS  231 (236)
Q Consensus       192 ~~~~a~~~L~~l~~~~~~~~~i---~~~g~~i~~lv~~l~~~~  231 (236)
                      .+.+++..|..+..+..+...+   +..+.-+..++.+|++.+
T Consensus       216 trRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~s  258 (330)
T d1upka_         216 TKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS  258 (330)
T ss_dssp             HHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCch
Confidence            8899999999998877766654   444433566666777654

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.95  E-value=0.027  Score=42.37  Aligned_cols=64  Identities=14%  Similarity=0.147  Sum_probs=29.5

Q ss_pred             CcHHHHHhhccCCChHHHHHHHHHH-----HhhCCCCch--hHHhhhcccHHHHHHHHhccCCHHHHHHHHH
Q 044293           51 GAISTLLGLSKSSSPIIRTLSLSIL-----LNLSLNPDL--KQSLASMETIYRLNWIIQSSSSQETVKLASS  115 (236)
Q Consensus        51 g~i~~Lv~lL~~~~~~~~~~a~~~L-----~~l~~~~~~--~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~  115 (236)
                      -.++.|..+++.+++.++..++..|     ..+..+++-  |..+...=..+.|..+++.. +..++..++.
T Consensus        66 a~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~-d~~VR~~aa~  136 (233)
T d1lrva_          66 SPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADR-DYLVRAYVVQ  136 (233)
T ss_dssp             SCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCS-SHHHHHHHHH
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCC-CHHHHHHHHh
Confidence            3455555666666666665554322     223333321  22222222234445555555 5666655543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.68  E-value=0.3  Score=43.07  Aligned_cols=134  Identities=13%  Similarity=0.041  Sum_probs=90.6

Q ss_pred             HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhccCcHHHHHhhccCCC--hHHHHHHHHHHHhhCC------
Q 044293           10 INNCVSRSQ-SDSYEDQQKALQTLASITRVSPQYRSLLAQTDGAISTLLGLSKSSS--PIIRTLSLSILLNLSL------   80 (236)
Q Consensus        10 i~~lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~l~~------   80 (236)
                      ++.+.++|. +.+++.++.|-..|..+..+           +|.+..|+..+.+.+  ..+|-.|+-.+.|.-.      
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~-----------p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~   72 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLETQ-----------DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDE   72 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHHTS-----------TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence            456666664 56777788887777766432           477778888776543  4667767766665422      


Q ss_pred             ------CCchhHHhhhcccHHHHHHHHhccCCHHHHHHHHHHHHHhcccchhhhhhcc-cCcHHHHHHhhcCCCcHHHHH
Q 044293           81 ------NPDLKQSLASMETIYRLNWIIQSSSSQETVKLASSLICSLAMLDKNKARFGV-AGTVQVLVKAVSAPSNPAGHH  153 (236)
Q Consensus        81 ------~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~  153 (236)
                            .++.|..|.     ..++..+.+. +..++...+.++..++..+-.    .+ .+.++.|++.++++++.....
T Consensus        73 ~~~~~i~~e~k~~Ik-----~~ll~~l~~~-~~~ir~~l~~~i~~I~~~d~p----~~Wp~ll~~l~~~l~s~~~~~~~~  142 (959)
T d1wa5c_          73 NGNHLLPANNVELIK-----KEIVPLMISL-PNNLQVQIGEAISSIADSDFP----DRWPTLLSDLASRLSNDDMVTNKG  142 (959)
T ss_dssp             SSCBSSCHHHHHHHH-----HHHHHHHHHS-CHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHTTCCSSCTTHHHH
T ss_pred             cccCCCCHHHHHHHH-----HHHHHHHhCC-cHHHHHHHHHHHHHHHHHhCc----cccHHHHHHHHHHhCCCCHHHHHH
Confidence                  112233332     3344455555 678888899999988875421    12 588999999999988888899


Q ss_pred             HHHHHHHHhcC
Q 044293          154 LLSSLAELVQF  164 (236)
Q Consensus       154 a~~aL~~L~~~  164 (236)
                      ++.+|..++..
T Consensus       143 ~L~~l~~i~k~  153 (959)
T d1wa5c_         143 VLTVAHSIFKR  153 (959)
T ss_dssp             HHHHHHHHHGG
T ss_pred             HHHHHHHHHHH
Confidence            99999999863

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.31  Score=33.41  Aligned_cols=74  Identities=12%  Similarity=0.134  Sum_probs=62.1

Q ss_pred             hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC------CChHHHHHHHHHHH
Q 044293            4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS------SSPIIRTLSLSILL   76 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~   76 (236)
                      ....+.+..+.+.+++.++.++..|+..|-.+..+ ++.+...+... +++..|+.+++.      .++.+++.++..+.
T Consensus        41 ~~~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~-~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~  119 (145)
T d1ujka_          41 EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKF-RFLNELIKVVSPKYLGSRTSEKVKNKILELLY  119 (145)
T ss_dssp             THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSH-HHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhH-HHHHHHHHHHhhccCCCCCcHHHHHHHHHHHH
Confidence            34577888999999999999999999999999988 58888888887 999999999863      45688888888886


Q ss_pred             hh
Q 044293           77 NL   78 (236)
Q Consensus        77 ~l   78 (236)
                      .-
T Consensus       120 ~W  121 (145)
T d1ujka_         120 SW  121 (145)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.11  E-value=0.35  Score=33.00  Aligned_cols=73  Identities=14%  Similarity=0.117  Sum_probs=60.3

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC------CChHHHHHHHHHHHh
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS------SSPIIRTLSLSILLN   77 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~   77 (236)
                      ...+.+..+.+.++++++.++..|+..|-.+..+ ++.+...+... .++..|+.+++.      .++.++..++..+..
T Consensus        35 ~~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask-~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~  113 (143)
T d1mhqa_          35 GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKF-RFLNELIKVLSPKYLGSWATGKVKGRVIEILFS  113 (143)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSH-HHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH-HHHHHHHHHHccccCCCCCCHHHHHHHHHHHHH
Confidence            3567888899999999999999999999888887 47788888876 999999999863      367888888888865


Q ss_pred             h
Q 044293           78 L   78 (236)
Q Consensus        78 l   78 (236)
                      .
T Consensus       114 W  114 (143)
T d1mhqa_         114 W  114 (143)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.02  E-value=1  Score=39.44  Aligned_cols=138  Identities=12%  Similarity=0.038  Sum_probs=90.2

Q ss_pred             HHHHHhhcc-CCChHHHHHHHHHHHhhCCCCchhHHhhhcccHHHHHHHHhccC-CHHHHHHHHHHHHHhcccc--h-h-
Q 044293           53 ISTLLGLSK-SSSPIIRTLSLSILLNLSLNPDLKQSLASMETIYRLNWIIQSSS-SQETVKLASSLICSLAMLD--K-N-  126 (236)
Q Consensus        53 i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~~a~~~L~~Ls~~~--~-~-  126 (236)
                      ++.+..+|. +.+++.++.|-.-|..+..+         .|.+..|++++.+.+ +..+|..|+-.|+|.....  + . 
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~---------p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~   74 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLETQ---------DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG   74 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHHTS---------TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHHcC---------CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence            455666654 35667777777777776554         367888888887653 5678999999988765421  0 0 


Q ss_pred             hhhhc---ccCcHHHHHHhhcCCCcHHHHHHHHHHHHHhcC--CCChHHHHHhCcHHHHHHHhcCCChhhHHHHHHHHHH
Q 044293          127 KARFG---VAGTVQVLVKAVSAPSNPAGHHLLSSLAELVQF--HGNSTLAVRAGAVSELIHLIGSTEAEDLAGTSLAVLN  201 (236)
Q Consensus       127 ~~~i~---~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~--~~~~~~~~~~g~i~~lv~ll~~~~~~~~~~~a~~~L~  201 (236)
                      ...+-   +...=..|+..+.+.+..++...+.++..++..  ++.     ..+.+|.+++.+++++ ......++.+|.
T Consensus        75 ~~~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~-----Wp~ll~~l~~~l~s~~-~~~~~~~L~~l~  148 (959)
T d1wa5c_          75 NHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDR-----WPTLLSDLASRLSNDD-MVTNKGVLTVAH  148 (959)
T ss_dssp             CBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHTTCCSSC-TTHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCccc-----cHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence            00111   122234556666666777777888888888763  221     3577889999998764 566678888888


Q ss_pred             HHcC
Q 044293          202 LLAR  205 (236)
Q Consensus       202 ~l~~  205 (236)
                      .++.
T Consensus       149 ~i~k  152 (959)
T d1wa5c_         149 SIFK  152 (959)
T ss_dssp             HHHG
T ss_pred             HHHH
Confidence            8773

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.34  E-value=0.54  Score=32.35  Aligned_cols=76  Identities=12%  Similarity=0.167  Sum_probs=60.5

Q ss_pred             hHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccC------CChHHHHHHHHHHH
Q 044293            4 PRVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKS------SSPIIRTLSLSILL   76 (236)
Q Consensus         4 ~~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~~~a~~~L~   76 (236)
                      +..++.+..+.+.+++.++.++..|+..|-.+..+ +..+...+... .++..|+.+++.      .++.++..++..+.
T Consensus        35 ~~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask-~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~  113 (151)
T d1juqa_          35 EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKF-RFLNELIKVVSPKYLGDRVSEKVKTKVIELLY  113 (151)
T ss_dssp             THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH-HHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhH-HHHHHHHHHHcccCCCCcccHHHHHHHHHHHH
Confidence            34678889999999999999999999999988887 35667777776 899999998864      25678888888877


Q ss_pred             hhCC
Q 044293           77 NLSL   80 (236)
Q Consensus        77 ~l~~   80 (236)
                      .-+.
T Consensus       114 ~Wa~  117 (151)
T d1juqa_         114 SWTM  117 (151)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.21  E-value=0.27  Score=33.64  Aligned_cols=73  Identities=11%  Similarity=0.090  Sum_probs=58.8

Q ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhccCcHHHHHhhccCC-ChHHHHHHHHHHHhh
Q 044293            5 RVRETINNCVSRSQSDSYEDQQKALQTLASITRV-SPQYRSLLAQTDGAISTLLGLSKSS-SPIIRTLSLSILLNL   78 (236)
Q Consensus         5 ~~~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l   78 (236)
                      ..++.+..+.+.++++++.++..|+..|-.+..+ +......+... +.+..|..++++. +..++..++..+..-
T Consensus        39 ~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~-~fl~~l~~l~~~~~~~~Vk~kil~li~~W  113 (145)
T d1dvpa1          39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTK-ENCEMFSSFLESTPHENVRQKMLELVQTW  113 (145)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            3577888999999999999999999999988887 35567777775 8888888888654 567888888888763

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=88.09  E-value=4.6  Score=31.18  Aligned_cols=147  Identities=13%  Similarity=-0.020  Sum_probs=69.5

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCChHHHHHHHhc------cCcHHHHHhhccCCChHHHHHHHHHHHhhCC
Q 044293            7 RETINNCVSRSQSDSYEDQQKALQTLASITRVSPQYRSLLAQT------DGAISTLLGLSKSSSPIIRTLSLSILLNLSL   80 (236)
Q Consensus         7 ~~~i~~lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~   80 (236)
                      ..-.-.||+.++.-+.+........    ....+..|..|.++      +..+..+.+++.++.-.- ..+...+..++.
T Consensus        42 ~~kF~~Lv~~lR~~~~e~l~~v~~~----~~~~~~~r~~~lDal~~~GT~~a~~~i~~~I~~~~ls~-~ea~~~l~~l~~  116 (336)
T d1lsha1          42 PAKFLRLTAFLRNVDAGVLQSIWHK----LHQQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTS-AEATQIVASTLS  116 (336)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHH----HTTSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHH----HhcChhHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHhc
Confidence            3344456666665554443333222    22334445544332      344555666665543221 223444444433


Q ss_pred             CCchhHHhhhcccHHHHHHHHhcc---CCHHHHHHHHHHHHHhcccchhhhhhcccCcHHHHHHhh----cCCCcHHHHH
Q 044293           81 NPDLKQSLASMETIYRLNWIIQSS---SSQETVKLASSLICSLAMLDKNKARFGVAGTVQVLVKAV----SAPSNPAGHH  153 (236)
Q Consensus        81 ~~~~~~~i~~~g~i~~L~~lL~~~---~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~  153 (236)
                      ....     ....+..+..++++.   .++.++..+.-++.+|.........-.....++.+...+    ..++...+..
T Consensus       117 ~~~P-----t~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  191 (336)
T d1lsha1         117 NQQA-----TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVL  191 (336)
T ss_dssp             TCCC-----CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCC-----CHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHH
Confidence            3211     112344555566532   256666666655555443211100011123455555554    3556666777


Q ss_pred             HHHHHHHHhc
Q 044293          154 LLSSLAELVQ  163 (236)
Q Consensus       154 a~~aL~~L~~  163 (236)
                      ++++|+|+..
T Consensus       192 ~LkaLGN~g~  201 (336)
T d1lsha1         192 ALKALGNAGQ  201 (336)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHhccCC
Confidence            8999999863