Citrus Sinensis ID: 044323

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccEccHccHHHHHHHHHHHHHHHHHHHcccccccEEcHHHHHHHHHHHHHccEEEEcccccccccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mqtspsratrtfmdygsisqAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH
Flexible Loop (DISEMBL)
mqtspsratrtfmdygsisqAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH
Low Complexity Region (SEG)
MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH
Disordered region (IsUnstruct)
***********FMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQH******
Disordered Region (DISOPRED)
***********FMDYGSISQAMDGICGLYERKLK*****IRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKL**
Disordered Region (DISEMBL)
*********RTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH
Disordered Region (DISPRO)
********TRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKLA*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
Q96319	109	Enhancer of rudimentary h	yes	no	1.0	0.853	0.806	3e-42
Q86A92	100	Enhancer of rudimentary h	yes	no	1.0	0.93	0.505	7e-26
Q93104	103	Enhancer of rudimentary h	N/A	no	0.989	0.893	0.423	1e-19
Q94554	104	Protein enhancer of rudim	N/A	no	0.989	0.884	0.423	8e-19
P84089	104	Enhancer of rudimentary h	yes	no	1.0	0.894	0.419	9e-19
P84090	104	Enhancer of rudimentary h	yes	no	1.0	0.894	0.419	9e-19
Q3SZC0	104	Enhancer of rudimentary h	yes	no	1.0	0.894	0.419	9e-19
Q98874	104	Enhancer of rudimentary h	yes	no	1.0	0.894	0.408	1e-18
Q24337	104	Protein enhancer of rudim	yes	no	0.903	0.807	0.428	2e-18
P69100	102	Enhancer of rudimentary h	N/A	no	0.903	0.823	0.380	3e-15

>sp|Q96319|ERH_ARATH Enhancer of rudimentary homolog OS=Arabidopsis thaliana GN=At5g10810 PE=3 SV=1

 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 75/93 (80%), Positives = 87/93 (93%)

Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           +Q SPSRATRTFMDY SI QAMDGICGLYERKLKE+NP++R+I+YD+ADLYNFIDGLAD+
Sbjct: 14  LQNSPSRATRTFMDYDSIGQAMDGICGLYERKLKEINPSLRNISYDIADLYNFIDGLADL 73

Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           SALVYDHSI AYLPYDRQWIKQ+ F HLK++A+
Sbjct: 74  SALVYDHSISAYLPYDRQWIKQKAFHHLKRIAN 106

May have a role in the cell cycle.
Arabidopsis thaliana (taxid: 3702)

>sp|Q86A92|ERH_DICDI Enhancer of rudimentary homolog OS=Dictyostelium discoideum GN=erh PE=3 SV=1

 Score =  115 bits (288), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 71/93 (76%)

Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           +QT+  +++RTFMDY S++QA++GIC +YE++LK+  P  ++ITYD++ L+ FID LAD+
Sbjct: 8   LQTTMGKSSRTFMDYESVNQAIEGICNMYEQRLKQERPNQKNITYDISQLFKFIDSLADL 67

Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           S LVY   I AY PY+++WIK +   HL+KLA 
Sbjct: 68  SCLVYTSHINAYTPYNKEWIKTKIINHLQKLAQ 100

May have a role in the cell cycle.

Dictyostelium discoideum (taxid: 44689)

>sp|Q93104|ERH_AEDAE Enhancer of rudimentary homolog OS=Aedes aegypti PE=3 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 62/92 (67%)

Query: 1  MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
          +Q   +  TRT+ DY S+++ M+G+C +YE  LK  NP    ITYD++ L++F+D LAD+
Sbjct: 8  VQPGRNPETRTYSDYESVNECMEGVCKIYEEHLKRRNPNTPTITYDISQLFDFVDQLADL 67

Query: 61 SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLA 92
          S LVY  S   Y PY+++WIK++ +  L++ A
Sbjct: 68 SCLVYQKSTNTYAPYNKEWIKEKIYVLLRQAA 99

May have a role in the cell cycle.

Aedes aegypti (taxid: 7159)

>sp|Q94554|ER_DROVI Protein enhancer of rudimentary OS=Drosophila virilis GN=e(r) PE=3 SV=1

 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 59/92 (64%)

Query: 1  MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
          +Q      TRT+ DY S+++ M+G+C +YE  LK  NP    ITYD++ L++FID L D+
Sbjct: 8  VQPGARPETRTYCDYESVNECMEGVCKIYEEHLKRRNPNTPTITYDISQLFDFIDTLIDI 67

Query: 61 SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLA 92
          S LVY  S   Y PY++ WIK++ +  L++ A
Sbjct: 68 SCLVYQKSTNTYAPYNKDWIKEKIYVLLRQAA 99

Acts as an enhancer of the rudimentary gene. Has a role in pyrimidine biosynthesis and the cell cycle.

Drosophila virilis (taxid: 7244)

>sp|P84089|ERH_MOUSE Enhancer of rudimentary homolog OS=Mus musculus GN=Erh PE=1 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 61/93 (65%)

Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           +Q +     RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+
Sbjct: 8   VQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADL 67

Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           S LVY    Q Y PY++ WIK++ +  L++ A 
Sbjct: 68  SCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQ 100

May have a role in the cell cycle.

Mus musculus (taxid: 10090)

>sp|P84090|ERH_HUMAN Enhancer of rudimentary homolog OS=Homo sapiens GN=ERH PE=1 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 61/93 (65%)

Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           +Q +     RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+
Sbjct: 8   VQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADL 67

Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           S LVY    Q Y PY++ WIK++ +  L++ A 
Sbjct: 68  SCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQ 100

May have a role in the cell cycle.

Homo sapiens (taxid: 9606)

>sp|Q3SZC0|ERH_BOVIN Enhancer of rudimentary homolog OS=Bos taurus GN=ERH PE=2 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 61/93 (65%)

Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           +Q +     RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+
Sbjct: 8   VQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADL 67

Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           S LVY    Q Y PY++ WIK++ +  L++ A 
Sbjct: 68  SCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQ 100

May have a role in the cell cycle.

Bos taurus (taxid: 9913)

>sp|Q98874|ERH_DANRE Enhancer of rudimentary homolog OS=Danio rerio GN=erh PE=3 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 61/93 (65%)

Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           +Q +     RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++F+D LAD+
Sbjct: 8   VQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFVDDLADL 67

Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           S LVY    Q Y PY++ WIK++ +  L++ A 
Sbjct: 68  SCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQ 100

May have a role in the cell cycle.

Danio rerio (taxid: 7955)

>sp|Q24337|ER_DROME Protein enhancer of rudimentary OS=Drosophila melanogaster GN=e(r) PE=1 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 57/84 (67%)

Query: 9  TRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHS 68
          TRT+ DY S+++ M+G+C +YE  LK  NP    ITYD++ L++FID + D+S +VY  S
Sbjct: 16 TRTYCDYESVNECMEGVCKIYEEHLKRRNPNTPTITYDISQLFDFIDTMVDISCMVYQKS 75

Query: 69 IQAYLPYDRQWIKQRTFQHLKKLA 92
             Y PY++ WIK++ +  L++ A
Sbjct: 76 TNTYAPYNKDWIKEKIYVLLRQAA 99

Acts as an enhancer of the rudimentary gene. Has a role in pyrimidine biosynthesis and the cell cycle.

Drosophila melanogaster (taxid: 7227)

>sp|P69100|ERH_TAESO Enhancer of rudimentary homolog OS=Taenia solium GN=ERH PE=3 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 55/84 (65%)

Query: 9   TRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHS 68
           +R + DY +++Q ++G+C +YE +LK+ NP    ITYD++ L+ FID LAD+S L +  +
Sbjct: 17  SRVWADYETLNQCLEGVCKIYEEQLKQQNPTAPTITYDISQLFKFIDQLADLSCLEFHPA 76

Query: 69  IQAYLPYDRQWIKQRTFQHLKKLA 92
              Y+P+ + WIK+  +  L+  A
Sbjct: 77  TGTYVPHTKDWIKENIYALLRNQA 100

May have a role in the cell cycle.

Taenia solium (taxid: 6204)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
449441854	102	PREDICTED: enhancer of rudimentary homol	1.0	0.911	0.903	7e-44
116784552	103	unknown [Picea sitchensis]	0.989	0.893	0.858	5e-42
225430514	102	PREDICTED: enhancer of rudimentary homol	1.0	0.911	0.849	1e-41
296082149	93	unnamed protein product [Vitis vinifera]	1.0	1.0	0.849	1e-41
3452091	125	rudimentary enhancer [Glycine max]	1.0	0.744	0.849	3e-41
356564015	102	PREDICTED: enhancer of rudimentary homol	1.0	0.911	0.838	4e-41
359807252	102	rudimentary enhancer [Glycine max] gi|25	1.0	0.911	0.849	6e-41
224089384	102	predicted protein [Populus trichocarpa]	1.0	0.911	0.860	1e-40
18416384	109	putative enhancer of rudimentary protein	1.0	0.853	0.806	1e-40
224141983	102	predicted protein [Populus trichocarpa]	1.0	0.911	0.849	2e-40

>gi|449441854|ref|XP_004138697.1| PREDICTED: enhancer of rudimentary homolog [Cucumis sativus] gi|449493309|ref|XP_004159251.1| PREDICTED: enhancer of rudimentary homolog [Cucumis sativus]

 Score =  181 bits (458), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 84/93 (90%), Positives = 90/93 (96%)

Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           MQTS +RATRTFMDY SISQAMDGICGLYERKLK+LNPAIR+ITYD+ADLYNFIDGLADM
Sbjct: 10  MQTSHNRATRTFMDYDSISQAMDGICGLYERKLKDLNPAIRNITYDIADLYNFIDGLADM 69

Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           SALV++HSIQAYLPYDRQWIKQR FQHLKKLAH
Sbjct: 70  SALVFEHSIQAYLPYDRQWIKQRIFQHLKKLAH 102

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116784552|gb|ABK23389.1| unknown [Picea sitchensis]

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 79/92 (85%), Positives = 88/92 (95%)

Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           MQT+ +R+TRTFMD+ S+SQAMDGICGLYERKLKELNPA+R+ITYD+ADLYNFIDGLAD+
Sbjct: 10  MQTAQNRSTRTFMDFDSVSQAMDGICGLYERKLKELNPALRNITYDIADLYNFIDGLADL 69

Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLA 92
           SALVYDHSIQAYLPYDRQWIK R FQHLKKLA
Sbjct: 70  SALVYDHSIQAYLPYDRQWIKHRIFQHLKKLA 101

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430514|ref|XP_002285565.1| PREDICTED: enhancer of rudimentary homolog [Vitis vinifera]

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 79/93 (84%), Positives = 89/93 (95%)

Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           MQTS +R+TRTFMDY SISQAMDGICGLYERKLK+LNPA ++ITYD+ADLYNFIDGLADM
Sbjct: 10  MQTSQNRSTRTFMDYDSISQAMDGICGLYERKLKDLNPANQNITYDIADLYNFIDGLADM 69

Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           SALVY+HSIQAYLPYDRQWIKQRT QHL+++AH
Sbjct: 70  SALVYEHSIQAYLPYDRQWIKQRTLQHLRRMAH 102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082149|emb|CBI21154.3| unnamed protein product [Vitis vinifera]

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 79/93 (84%), Positives = 89/93 (95%)

Query: 1  MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
          MQTS +R+TRTFMDY SISQAMDGICGLYERKLK+LNPA ++ITYD+ADLYNFIDGLADM
Sbjct: 1  MQTSQNRSTRTFMDYDSISQAMDGICGLYERKLKDLNPANQNITYDIADLYNFIDGLADM 60

Query: 61 SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
          SALVY+HSIQAYLPYDRQWIKQRT QHL+++AH
Sbjct: 61 SALVYEHSIQAYLPYDRQWIKQRTLQHLRRMAH 93

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3452091|emb|CAA06199.1| rudimentary enhancer [Glycine max]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/93 (84%), Positives = 86/93 (92%)

Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           MQTS +RATRTFMDY SI+QAMDGIC LYERKLKELNPAIR+++YD+ DLYNFIDGLADM
Sbjct: 33  MQTSQNRATRTFMDYESITQAMDGICALYERKLKELNPAIRNLSYDITDLYNFIDGLADM 92

Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           SALVYD SI AYLP+DR WIKQRTFQHLKKLAH
Sbjct: 93  SALVYDSSIHAYLPHDRLWIKQRTFQHLKKLAH 125

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564015|ref|XP_003550252.1| PREDICTED: enhancer of rudimentary homolog [Glycine max]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/93 (83%), Positives = 86/93 (92%)

Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           MQTS +RATRTFMDY SI+QAMDGIC LYERKLKELNP IR+++YD+ DLYNFIDGLADM
Sbjct: 10  MQTSQNRATRTFMDYESITQAMDGICALYERKLKELNPTIRNLSYDITDLYNFIDGLADM 69

Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           SALVYD SI AY+P+DRQWIKQRTFQHLKKLAH
Sbjct: 70  SALVYDSSIHAYMPHDRQWIKQRTFQHLKKLAH 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807252|ref|NP_001241623.1| rudimentary enhancer [Glycine max] gi|255646105|gb|ACU23539.1| unknown [Glycine max]

 Score =  171 bits (433), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 79/93 (84%), Positives = 86/93 (92%)

Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           MQTS +RATRTFMDY SI+QAMDGIC LYERKLKELNPAIR+++YD+ DLYNFIDGLADM
Sbjct: 10  MQTSQNRATRTFMDYESITQAMDGICALYERKLKELNPAIRNLSYDITDLYNFIDGLADM 69

Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           SALVYD SI AYLP+DR WIKQRTFQHLKKLAH
Sbjct: 70  SALVYDSSIHAYLPHDRLWIKQRTFQHLKKLAH 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089384|ref|XP_002308713.1| predicted protein [Populus trichocarpa] gi|222854689|gb|EEE92236.1| predicted protein [Populus trichocarpa]

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/93 (86%), Positives = 85/93 (91%)

Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           MQ S +R+TRTFMDY SISQAMDGIC LYERKLK+LNPA R+ITYD+ADLYNFIDGLADM
Sbjct: 10  MQNSQNRSTRTFMDYDSISQAMDGICTLYERKLKDLNPANRNITYDIADLYNFIDGLADM 69

Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           SALVYDHSIQAYLP DRQWIKQR  QHLKKLAH
Sbjct: 70  SALVYDHSIQAYLPNDRQWIKQRLLQHLKKLAH 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416384|ref|NP_568240.1| putative enhancer of rudimentary protein [Arabidopsis thaliana] gi|2842744|sp|Q96319.1|ERH_ARATH RecName: Full=Enhancer of rudimentary homolog gi|1595812|gb|AAC49667.1| enhancer of rudimentary homolog ATER [Arabidopsis thaliana] gi|26450230|dbj|BAC42233.1| putative enhancer of rudimentary [Arabidopsis thaliana] gi|28827444|gb|AAO50566.1| unknown protein [Arabidopsis thaliana] gi|332004216|gb|AED91599.1| putative enhancer of rudimentary protein [Arabidopsis thaliana]

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 75/93 (80%), Positives = 87/93 (93%)

Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           +Q SPSRATRTFMDY SI QAMDGICGLYERKLKE+NP++R+I+YD+ADLYNFIDGLAD+
Sbjct: 14  LQNSPSRATRTFMDYDSIGQAMDGICGLYERKLKEINPSLRNISYDIADLYNFIDGLADL 73

Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           SALVYDHSI AYLPYDRQWIKQ+ F HLK++A+
Sbjct: 74  SALVYDHSISAYLPYDRQWIKQKAFHHLKRIAN 106

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141983|ref|XP_002324340.1| predicted protein [Populus trichocarpa] gi|118488431|gb|ABK96030.1| unknown [Populus trichocarpa] gi|222865774|gb|EEF02905.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/93 (84%), Positives = 85/93 (91%)

Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           MQTS +RATRTFMDY SISQAMDGIC LYERKLK+LNPA R+ITYD+ DLYNFIDGLADM
Sbjct: 10  MQTSQNRATRTFMDYDSISQAMDGICALYERKLKDLNPANRNITYDIGDLYNFIDGLADM 69

Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           SALVY+HSIQAYLP DRQWIKQR  QHLK+LAH
Sbjct: 70  SALVYEHSIQAYLPNDRQWIKQRLLQHLKRLAH 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
TAIR|locus:2183790	109	ER "ENHANCER OF RUDIMENTARY HO	1.0	0.853	0.806	1.8e-39
DICTYBASE|DDB_G0274565	100	erh "enhancer of rudimentary f	0.989	0.92	0.510	4.2e-24
UNIPROTKB|F1NHW3	104	ERH "Enhancer of rudimentary h	0.892	0.798	0.457	1.4e-18
UNIPROTKB|Q3SZC0	104	ERH "Enhancer of rudimentary h	0.892	0.798	0.457	1.4e-18
UNIPROTKB|J9P0J7	156	ERH "Uncharacterized protein"	0.892	0.532	0.457	1.4e-18
UNIPROTKB|P84090	104	ERH "Enhancer of rudimentary h	0.892	0.798	0.457	1.4e-18
UNIPROTKB|F2Z5J5	104	ERH "Enhancer of rudimentary h	0.892	0.798	0.457	1.4e-18
MGI|MGI:108089	104	Erh "enhancer of rudimentary h	0.892	0.798	0.457	1.4e-18
RGD|1595409	122	Erh "enhancer of rudimentary h	0.892	0.680	0.457	1.4e-18
ZFIN|ZDB-GENE-990415-57	104	erh "enhancer of rudimentary h	0.892	0.798	0.445	1.7e-18

TAIR|locus:2183790 ER "ENHANCER OF RUDIMENTARY HOMOLOGUE" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 75/93 (80%), Positives = 87/93 (93%)

Query:     1 MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
             +Q SPSRATRTFMDY SI QAMDGICGLYERKLKE+NP++R+I+YD+ADLYNFIDGLAD+
Sbjct:    14 LQNSPSRATRTFMDYDSIGQAMDGICGLYERKLKEINPSLRNISYDIADLYNFIDGLADL 73

Query:    61 SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
             SALVYDHSI AYLPYDRQWIKQ+ F HLK++A+
Sbjct:    74 SALVYDHSISAYLPYDRQWIKQKAFHHLKRIAN 106

GO:0009507 "chloroplast" evidence=ISM

DICTYBASE|DDB_G0274565 erh "enhancer of rudimentary family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 47/92 (51%), Positives = 71/92 (77%)

Query:     1 MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
             +QT+  +++RTFMDY S++QA++GIC +YE++LK+  P  ++ITYD++ L+ FID LAD+
Sbjct:     8 LQTTMGKSSRTFMDYESVNQAIEGICNMYEQRLKQERPNQKNITYDISQLFKFIDSLADL 67

Query:    61 SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLA 92
             S LVY   I AY PY+++WIK +   HL+KLA
Sbjct:    68 SCLVYTSHINAYTPYNKEWIKTKIINHLQKLA 99

GO:0007049 "cell cycle" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1NHW3 ERH "Enhancer of rudimentary homolog" [Gallus gallus (taxid:9031)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 38/83 (45%), Positives = 58/83 (69%)

Query:    10 RTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSI 69
             RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+S LVY    
Sbjct:    17 RTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADT 76

Query:    70 QAYLPYDRQWIKQRTFQHLKKLA 92
             Q Y PY++ WIK++ +  L++ A
Sbjct:    77 QTYQPYNKDWIKEKIYVLLRRQA 99

GO:0007049 "cell cycle" evidence=IEA

GO:0030496 "midbody" evidence=IEA

UNIPROTKB|Q3SZC0 ERH "Enhancer of rudimentary homolog" [Bos taurus (taxid:9913)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 38/83 (45%), Positives = 58/83 (69%)

Query:    10 RTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSI 69
             RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+S LVY    
Sbjct:    17 RTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADT 76

Query:    70 QAYLPYDRQWIKQRTFQHLKKLA 92
             Q Y PY++ WIK++ +  L++ A
Sbjct:    77 QTYQPYNKDWIKEKIYVLLRRQA 99

GO:0030496 "midbody" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

UNIPROTKB|J9P0J7 ERH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 38/83 (45%), Positives = 58/83 (69%)

Query:    10 RTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSI 69
             RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+S LVY    
Sbjct:    69 RTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADT 128

Query:    70 QAYLPYDRQWIKQRTFQHLKKLA 92
             Q Y PY++ WIK++ +  L++ A
Sbjct:   129 QTYQPYNKDWIKEKIYVLLRRQA 151

GO:0007049 "cell cycle" evidence=IEA

UNIPROTKB|P84090 ERH "Enhancer of rudimentary homolog" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 38/83 (45%), Positives = 58/83 (69%)

Query:    10 RTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSI 69
             RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+S LVY    
Sbjct:    17 RTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADT 76

Query:    70 QAYLPYDRQWIKQRTFQHLKKLA 92
             Q Y PY++ WIK++ +  L++ A
Sbjct:    77 QTYQPYNKDWIKEKIYVLLRRQA 99

GO:0007049 "cell cycle" evidence=IEA

GO:0030496 "midbody" evidence=IDA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=TAS

GO:0006213 "pyrimidine nucleoside metabolic process" evidence=TAS

UNIPROTKB|F2Z5J5 ERH "Enhancer of rudimentary homolog" [Sus scrofa (taxid:9823)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 38/83 (45%), Positives = 58/83 (69%)

Query:    10 RTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSI 69
             RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+S LVY    
Sbjct:    17 RTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADT 76

Query:    70 QAYLPYDRQWIKQRTFQHLKKLA 92
             Q Y PY++ WIK++ +  L++ A
Sbjct:    77 QTYQPYNKDWIKEKIYVLLRRQA 99

GO:0030496 "midbody" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

MGI|MGI:108089 Erh "enhancer of rudimentary homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 38/83 (45%), Positives = 58/83 (69%)

Query:    10 RTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSI 69
             RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+S LVY    
Sbjct:    17 RTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADT 76

Query:    70 QAYLPYDRQWIKQRTFQHLKKLA 92
             Q Y PY++ WIK++ +  L++ A
Sbjct:    77 QTYQPYNKDWIKEKIYVLLRRQA 99

GO:0003674 "molecular_function" evidence=ND

GO:0007049 "cell cycle" evidence=IEA

GO:0030496 "midbody" evidence=ISO

RGD|1595409 Erh "enhancer of rudimentary homolog (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 38/83 (45%), Positives = 58/83 (69%)

Query:    10 RTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSI 69
             RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+S LVY    
Sbjct:    35 RTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADT 94

Query:    70 QAYLPYDRQWIKQRTFQHLKKLA 92
             Q Y PY++ WIK++ +  L++ A
Sbjct:    95 QTYQPYNKDWIKEKIYVLLRRQA 117

GO:0007049 "cell cycle" evidence=IEA

GO:0030496 "midbody" evidence=IEA;ISO

ZFIN|ZDB-GENE-990415-57 erh "enhancer of rudimentary homolog (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 37/83 (44%), Positives = 58/83 (69%)

Query:    10 RTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSI 69
             RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++F+D LAD+S LVY    
Sbjct:    17 RTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFVDDLADLSCLVYRADT 76

Query:    70 QAYLPYDRQWIKQRTFQHLKKLA 92
             Q Y PY++ WIK++ +  L++ A
Sbjct:    77 QTYQPYNKDWIKEKIYVLLRRQA 99

GO:0007049 "cell cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q24337	ER_DROME	No assigned EC number	0.4285	0.9032	0.8076	yes	no
Q22640	ERH_CAEEL	No assigned EC number	0.3604	0.9247	0.8349	yes	no
Q3SZC0	ERH_BOVIN	No assigned EC number	0.4193	1.0	0.8942	yes	no
Q98874	ERH_DANRE	No assigned EC number	0.4086	1.0	0.8942	yes	no
Q86A92	ERH_DICDI	No assigned EC number	0.5053	1.0	0.93	yes	no
Q96319	ERH_ARATH	No assigned EC number	0.8064	1.0	0.8532	yes	no
P84089	ERH_MOUSE	No assigned EC number	0.4193	1.0	0.8942	yes	no
P84090	ERH_HUMAN	No assigned EC number	0.4193	1.0	0.8942	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	93
pfam01133	103	pfam01133, ER, Enhancer of rudimentary	1e-52

>gnl|CDD|201616 pfam01133, ER, Enhancer of rudimentary

 Score =  159 bits (404), Expect = 1e-52
 Identities = 53/92 (57%), Positives = 72/92 (78%)

Query: 1  MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
          +Q S    +RTFMDY S++QA++GIC LYE  LKE NP+  +ITYD++ L+ FIDGLAD+
Sbjct: 8  VQPSKRIESRTFMDYESVNQALEGICKLYEEHLKEKNPSAPNITYDISQLFEFIDGLADL 67

Query: 61 SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLA 92
          S LVYDHS Q YLP+++QWIKQ+ ++ L+K A
Sbjct: 68 SCLVYDHSTQTYLPHNKQWIKQKIYELLRKQA 99

Enhancer of rudimentary is a protein of unknown function that is highly conserved in plants and animals. This protein is found to be an enhancer of the rudimentary gene. Length = 103

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
PF01133	102	ER: Enhancer of rudimentary; InterPro: IPR000781 T	100.0
KOG1766	104	consensus Enhancer of rudimentary [General functio	100.0

>PF01133 ER: Enhancer of rudimentary; InterPro: IPR000781 The Drosophila protein 'enhancer of rudimentary' (gene (e(r)) is a small protein of 104 residues whose function is not yet clear

Probab=100.00  E-value=2.4e-60  Score=327.09  Aligned_cols=93  Identities=52%  Similarity=0.950  Sum_probs=84.8

Q ss_pred             CCCCCCCCCccccccCCHHHHHHHHHHHHHHHHHhhCCCCCccceeHHHHHHhhhhhcCceeEEEeCCCCcccCCChhHH
Q 044323            1 MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWI   80 (93)
Q Consensus         1 vQ~~~~~~sRTy~DyeSv~~~megIC~~yE~~LK~~nP~~~~ItYdis~Lf~fiD~l~Dls~LV~~~~~~~Y~P~~K~WI   80 (93)
                      |||+++++||||+|||||++||||||++||++||++||++++|||||+|||+|||+|+|||||||++++++|+||||+||
T Consensus         8 vQp~~~~~sRTy~DyeSv~~cmegIC~~YE~~LK~~nP~~~~ItYdIs~Lf~fID~l~DlscLV~~~~~~~Y~P~nK~WI   87 (102)
T PF01133_consen    8 VQPSQRPESRTYSDYESVNECMEGICKIYEEHLKRKNPNSPSITYDISDLFDFIDSLADLSCLVYDKSTNAYVPHNKQWI   87 (102)
T ss_dssp             EESSSSCCC-EEEEESSHHHHHHHHHHHHHHHHHHHSTT-SS----HHHHHHHHHHSSEEEEEEEETTTTEEEEE-HHHH
T ss_pred             EecCCCCCcceeechhhHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHhhhhhcceEEEeCCCCccCCCCHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhC
Q 044323           81 KQRTFQHLKKLAH   93 (93)
Q Consensus        81 Keki~~~L~~~a~   93 (93)
                      |||||++||++|+
T Consensus        88 Keki~~~L~~~a~  100 (102)
T PF01133_consen   88 KEKIFQHLRKQAG  100 (102)
T ss_dssp             HHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999999984

From an evolutionary point of view, it is highly conserved [] and has been found to exist in probably all multicellular eukaryotic organisms. It has been proposed that this protein plays a role in the cell cycle.; GO: 0007049 cell cycle; PDB: 1W9G_A 2NML_A 1WWQ_A 1WZ7_B.

>KOG1766 consensus Enhancer of rudimentary [General function prediction only]

Probab=100.00  E-value=9.9e-59  Score=318.07  Aligned_cols=93  Identities=43%  Similarity=0.897  Sum_probs=91.8

Q ss_pred             CCCCCCCCCccccccCCHHHHHHHHHHHHHHHHHhhCCCCCccceeHHHHHHhhhhhcCceeEEEeCCCCcccCCChhHH
Q 044323            1 MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWI   80 (93)
Q Consensus         1 vQ~~~~~~sRTy~DyeSv~~~megIC~~yE~~LK~~nP~~~~ItYdis~Lf~fiD~l~Dls~LV~~~~~~~Y~P~~K~WI   80 (93)
                      |||+++++||||+|||||++||||||+|||+|||++||+.++|||||||||+|||+|+|||||||++++++|+||||+||
T Consensus         8 lQ~s~r~esRT~~DYesv~e~megiCk~yEe~Lkk~nPs~~~ITYDIsqlfeFiD~L~DlS~lVy~~~t~tY~pynk~wI   87 (104)
T KOG1766|consen    8 LQPSPRPESRTWGDYESVTECMEGICKMYEEHLKKKNPSAPPITYDISQLFEFIDDLADLSMLVYNRETGTYIPYNKDWI   87 (104)
T ss_pred             ecCCCCcccccccchHhHHHHHHHHHHHHHHHHHhcCCCCCCcceeHHHHHHHHHHHhhhhhhheecccccccCccHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhC
Q 044323           81 KQRTFQHLKKLAH   93 (93)
Q Consensus        81 Keki~~~L~~~a~   93 (93)
                      |||||++||++|+
T Consensus        88 Kekiy~lmr~~a~  100 (104)
T KOG1766|consen   88 KEKIYVLMRGRAQ  100 (104)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999884

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	93
1wwq_A	111	Solution Structure Of Mouse Er Length = 111		7e-20
1w9g_A	104	Structure Of Erh (Enhencer Of Rudimentary Gene) Len		7e-20
1wz7_A	111	Crystal Structure Of Enhancer Of Rudimentary Homolo		2e-18

>pdb|1WWQ|A Chain A, Solution Structure Of Mouse Er Length = 111

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 61/93 (65%)
Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           +Q +     RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+
Sbjct: 15  VQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADL 74
Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           S LVY    Q Y PY++ WIK++ +  L++ A 
Sbjct: 75  SCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQ 107

>pdb|1W9G|A Chain A, Structure Of Erh (Enhencer Of Rudimentary Gene) Length = 104

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 61/93 (65%)
Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           +Q +     RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+
Sbjct: 8   VQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADL 67
Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           S LVY    Q Y PY++ WIK++ +  L++ A 
Sbjct: 68  SCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQ 100

>pdb|1WZ7|A Chain A, Crystal Structure Of Enhancer Of Rudimentary Homologue (Erh) Length = 111

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 58/93 (62%)
Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           +Q +     RT+ DY S+++  +G+C  YE  LK  NP    ITYD++ L++FID LAD+
Sbjct: 15  VQPTKRPEGRTYADYESVNECXEGVCKXYEEHLKRXNPNSPSITYDISQLFDFIDDLADL 74
Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           S LVY    Q Y PY++ WIK++ +  L++ A 
Sbjct: 75  SCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQ 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	93
2nml_A	104	Enhancer of rudimentary homolog; HEF2/ERH fold, ps	1e-45

>2nml_A Enhancer of rudimentary homolog; HEF2/ERH fold, pseudo beta barrel, interaction network, transcription, cell cycle; 1.55A {Homo sapiens} SCOP: d.330.1.1 PDB: 1w9g_A 1wwq_A 1wz7_A Length = 104

 Score =  141 bits (356), Expect = 1e-45
 Identities = 39/93 (41%), Positives = 61/93 (65%)

Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           +Q +     RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+
Sbjct: 8   VQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADL 67

Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           S LVY    Q Y PY++ WIK++ +  L++ A 
Sbjct: 68  SCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQ 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
2nml_A	104	Enhancer of rudimentary homolog; HEF2/ERH fold, ps	100.0

>2nml_A Enhancer of rudimentary homolog; HEF2/ERH fold, pseudo beta barrel, interaction network, transcription, cell cycle; 1.55A {Homo sapiens} SCOP: d.330.1.1 PDB: 1w9g_A 1wwq_A 1wz7_A

Probab=100.00  E-value=4.4e-60  Score=325.75  Aligned_cols=93  Identities=42%  Similarity=0.886  Sum_probs=91.7

Q ss_pred             CCCCCCCCCccccccCCHHHHHHHHHHHHHHHHHhhCCCCCccceeHHHHHHhhhhhcCceeEEEeCCCCcccCCChhHH
Q 044323            1 MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWI   80 (93)
Q Consensus         1 vQ~~~~~~sRTy~DyeSv~~~megIC~~yE~~LK~~nP~~~~ItYdis~Lf~fiD~l~Dls~LV~~~~~~~Y~P~~K~WI   80 (93)
                      |||+++++||||+|||||++||||||++||++||++||++++|||||+|||+|||+|+|||||||++++++|+||||+||
T Consensus         8 vQp~~~~~sRTy~DyeSv~~~megiC~iYE~~LK~~nP~~~~ItYdI~~Lf~fID~l~DlscLV~~~~t~~Y~P~~K~WI   87 (104)
T 2nml_A            8 VQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWI   87 (104)
T ss_dssp             EECSSCGGGCEEEEESSHHHHHHHHHHHHHHHHHHHSTTCSSCCCCHHHHHHHHHHSSEEEEEEEETTTTEEEEECHHHH
T ss_pred             EecCCCCCcceeeccccHHHHHHHHHHHHHHHHHHcCCCCCccccCHHHHHHHHhcccccceEEEeCCCCccCCCCHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhC
Q 044323           81 KQRTFQHLKKLAH   93 (93)
Q Consensus        81 Keki~~~L~~~a~   93 (93)
                      |||||++||++|+
T Consensus        88 Keki~~~L~~~a~  100 (104)
T 2nml_A           88 KEKIYVLLRRQAQ  100 (104)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	93
d2nmla1	100	d.330.1.1 (A:2-101) Enhancer of rudimentary homolo	1e-47

>d2nmla1 d.330.1.1 (A:2-101) Enhancer of rudimentary homolog, ERH {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: ERH-like
superfamily: ERH-like
family: ERH-like
domain: Enhancer of rudimentary homolog, ERH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  144 bits (366), Expect = 1e-47
 Identities = 39/92 (42%), Positives = 61/92 (66%)

Query: 1  MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
          +Q +     RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+
Sbjct: 7  VQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADL 66

Query: 61 SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLA 92
          S LVY    Q Y PY++ WIK++ +  L++ A
Sbjct: 67 SCLVYRADTQTYQPYNKDWIKEKIYVLLRRQA 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	93
d2nmla1	100	Enhancer of rudimentary homolog, ERH {Mouse (Mus m	100.0

>d2nmla1 d.330.1.1 (A:2-101) Enhancer of rudimentary homolog, ERH {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: ERH-like
superfamily: ERH-like
family: ERH-like
domain: Enhancer of rudimentary homolog, ERH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-61  Score=327.57  Aligned_cols=93  Identities=42%  Similarity=0.886  Sum_probs=91.9

Q ss_pred             CCCCCCCCCccccccCCHHHHHHHHHHHHHHHHHhhCCCCCccceeHHHHHHhhhhhcCceeEEEeCCCCcccCCChhHH
Q 044323            1 MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWI   80 (93)
Q Consensus         1 vQ~~~~~~sRTy~DyeSv~~~megIC~~yE~~LK~~nP~~~~ItYdis~Lf~fiD~l~Dls~LV~~~~~~~Y~P~~K~WI   80 (93)
                      |||+++++||||+|||||++||||||++||++||++||++++|||||+|||+|||+|+|||||||++++++|+||||+||
T Consensus         7 vQp~~~~~sRTy~dYeSv~~cmegiC~iYEe~Lk~~~p~~~~ItYdi~~Lf~FID~l~DlscLV~~~~t~~Y~P~nk~WI   86 (100)
T d2nmla1           7 VQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWI   86 (100)
T ss_dssp             EECSSCGGGCEEEEESSHHHHHHHHHHHHHHHHHHHSTTCSSCCCCHHHHHHHHHHSSEEEEEEEETTTTEEEEECHHHH
T ss_pred             EecCCCCCcceeeccccHHHHHHHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhhhhcceEEEeCCCCccCCCCHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhC
Q 044323           81 KQRTFQHLKKLAH   93 (93)
Q Consensus        81 Keki~~~L~~~a~   93 (93)
                      |||||++||++|+
T Consensus        87 Keki~~~Lr~~a~   99 (100)
T d2nmla1          87 KEKIYVLLRRQAQ   99 (100)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999984