Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value
Query 102
PLN02775 286
PLN02775, PLN02775, Probable dihydrodipicolinate r
4e-53
TIGR02130 275
TIGR02130, dapB_plant, dihydrodipicolinate reducta
2e-41
>gnl|CDD|178374 PLN02775, PLN02775, Probable dihydrodipicolinate reductase
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Score = 167 bits (424), Expect = 4e-53
Identities = 76/128 (59%), Positives = 84/128 (65%), Gaps = 36/128 (28%)
Query: 1 FSGYFLQVLESHQAGKLDTSGTAKAVISSFQKLRVSFDMDQV------------------ 42
FSGY L+V+ESHQA KLDTSGTAKAVISSF+KL VSFDMDQ+
Sbjct: 158 FSGYTLEVVESHQATKLDTSGTAKAVISSFRKLGVSFDMDQIELIRDPKQQLEGVGVPEE 217
Query: 43 ------------------VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMI 84
VSF+FQHNVCGRSIYAEGTVDA+LFL+KK+ ADK I NMI
Sbjct: 218 HLNGHAFHTYRLTSPDGTVSFEFQHNVCGRSIYAEGTVDAVLFLAKKIAEGADKRIYNMI 277
Query: 85 DVLREGNM 92
DVLREGNM
Sbjct: 278 DVLREGNM 285
>gnl|CDD|131185 TIGR02130, dapB_plant, dihydrodipicolinate reductase
Back Show alignment and domain information
Score = 136 bits (344), Expect = 2e-41
Identities = 62/129 (48%), Positives = 74/129 (57%), Gaps = 36/129 (27%)
Query: 1 FSGYFLQVLESHQAGKLDTSGTAKAVISSFQKLRVSFDMDQV------------------ 42
F+GY L+V+ESHQA K D SGTAKAVI FQKL +DMD +
Sbjct: 147 FAGYKLEVMESHQASKADASGTAKAVIGCFQKLGFDYDMDDIEKIRDEKEQIERMGVPEE 206
Query: 43 ------------------VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMI 84
V F+FQHNVCGR IYAEGTVDA+LFL+ K+ + A+ I NMI
Sbjct: 207 HLGGHAFHLYHLDSADGTVHFEFQHNVCGRKIYAEGTVDAVLFLADKIIAAAEAKIFNMI 266
Query: 85 DVLREGNMQ 93
DVLREG M+
Sbjct: 267 DVLREGKMR 275
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome [Amino acid biosynthesis, Aspartate family]. Length = 275
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability
Query
102
PLN02775 286
Probable dihydrodipicolinate reductase
100.0
TIGR02130 275
dapB_plant dihydrodipicolinate reductase. This nar
100.0
PF05173 132
DapB_C: Dihydrodipicolinate reductase, C-terminus;
99.98
COG0289 266
DapB Dihydrodipicolinate reductase [Amino acid tra
99.97
TIGR00036 266
dapB dihydrodipicolinate reductase.
99.97
PRK00048 257
dihydrodipicolinate reductase; Provisional
99.97
>PLN02775 Probable dihydrodipicolinate reductase
Back Hide alignment and domain information
Probab=100.00 E-value=1.7e-33 Score=223.13 Aligned_cols=92 Identities=78% Similarity=1.093 Sum_probs=78.6
Q ss_pred CCCceEEEEccccCCCCChhhHHHHHHHHHHhcCCCCC---------CC----ce---------------------EE--
Q 044326 1 FSGYFLQVLESHQAGKLDTSGTAKAVISSFQKLRVSFD---------MD----QV---------------------VS-- 44 (102)
Q Consensus 1 f~~yDieI~E~HH~~K~DaSGTA~~La~~i~~~g~~~~---------~~----~i---------------------e~-- 44 (102)
|++||+||+|+||++|+|+||||++|++.|..+|.+++ .. .| |+
T Consensus 158 f~~yDiEIiE~HH~~K~DaSGTA~~lae~i~~~g~~~~~~~~~~~R~~~~~~~~igi~~~~lRgg~~HtV~f~~~~E~~~ 237 (286)
T PLN02775 158 FSGYTLEVVESHQATKLDTSGTAKAVISSFRKLGVSFDMDQIELIRDPKQQLEGVGVPEEHLNGHAFHTYRLTSPDGTVS 237 (286)
T ss_pred cCCCCEEEEECCCCCCCCCcHHHHHHHHHHHHhCCcccccccccccCccccccccceeeecccCCCcEEEEEecCCCeEE
Confidence 67899999999999999999999999999875543210 00 11 77
Q ss_pred EEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHHhcCCcc
Q 044326 45 FQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLREGNM 92 (102)
Q Consensus 45 Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL~~g~~ 92 (102)
|||+|+|+||++||.|||+||+||.+|+.++.+||+|+|.|||+.|.|
T Consensus 238 iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~pGlY~M~DVL~~~~~ 285 (286)
T PLN02775 238 FEFQHNVCGRSIYAEGTVDAVLFLAKKIAEGADKRIYNMIDVLREGNM 285 (286)
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHHhcCcccCCCCCccCHHHHHhhcCC
Confidence 999999999999999999999999998666667999999999998875
>TIGR02130 dapB_plant dihydrodipicolinate reductase
Back Show alignment and domain information
Probab=100.00 E-value=3.8e-33 Score=220.15 Aligned_cols=92 Identities=65% Similarity=0.993 Sum_probs=78.8
Q ss_pred CCCceEEEEccccCCCCChhhHHHHHHHHHHhcCCCC---------CCC-ce------------------------EE--
Q 044326 1 FSGYFLQVLESHQAGKLDTSGTAKAVISSFQKLRVSF---------DMD-QV------------------------VS-- 44 (102)
Q Consensus 1 f~~yDieI~E~HH~~K~DaSGTA~~La~~i~~~g~~~---------~~~-~i------------------------e~-- 44 (102)
|++||+||+|+||++|+|+||||++|++.++.+|.++ ++. +| |+
T Consensus 147 f~~ydvEIiE~HH~~K~DaSGTA~~l~~~i~~~~~~~~~~~~~~~R~~~~~igi~siR~~~vgGh~~Htv~f~s~~e~i~ 226 (275)
T TIGR02130 147 FAGYKLEVMESHQASKADASGTAKAVIGCFQKLGFDYDMDDIEKIRDEKEQIERMGVPEEHLGGHAFHLYHLDSADGTVH 226 (275)
T ss_pred cCCCCEEEEEcCCCCCCCCCHHHHHHHHHHHHhCCccCcccccccCCCCCccceEEecCcccCCCccEEEEEecCCCeEE
Confidence 6799999999999999999999999999987543211 111 22 67
Q ss_pred EEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHHhcCCcc
Q 044326 45 FQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLREGNM 92 (102)
Q Consensus 45 Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL~~g~~ 92 (102)
|||+|+|+||++||.||++||+||.+|++++.+||+|+|.|||+.|.+
T Consensus 227 iel~H~A~sR~~FA~GAl~AA~wL~~k~~~~~~~GlY~m~DvL~~~~~ 274 (275)
T TIGR02130 227 FEFQHNVCGRKIYAEGTVDAVLFLADKIIAAAEAKIFNMIDVLREGKM 274 (275)
T ss_pred EEEEEEECcHHHHHHHHHHHHHHHhcccccCCCCCccCHHHHHhhcCC
Confidence 799999999999999999999999998766778999999999998876
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
>PF05173 DapB_C: Dihydrodipicolinate reductase, C-terminus; InterPro: IPR022663 This entry represents the C-terminal region of Dihydrodipicolinate reductase
Back Show alignment and domain information
Probab=99.98 E-value=1.3e-32 Score=196.29 Aligned_cols=81 Identities=33% Similarity=0.488 Sum_probs=65.2
Q ss_pred CceEEEEccccCCCCCh-hhHHHHHHHHHHhcCC-C------C---CCCce----------------------EEEEEEE
Q 044326 3 GYFLQVLESHQAGKLDT-SGTAKAVISSFQKLRV-S------F---DMDQV----------------------VSFQFQH 49 (102)
Q Consensus 3 ~yDieI~E~HH~~K~Da-SGTA~~La~~i~~~g~-~------~---~~~~i----------------------e~Iel~H 49 (102)
+||+||+|+||++|+|+ ||||++|++.|.+... + . ..++| |+|||+|
T Consensus 19 ~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~i~v~s~R~g~i~G~H~V~f~~~~E~i~l~H 98 (132)
T PF05173_consen 19 GYDIEIIESHHRQKKDAPSGTALMLAESIAEARDRDLSEVARGGREQENEIGVHSVRGGGIVGEHEVIFGSPGETIELTH 98 (132)
T ss_dssp TSEEEEEEEE-TT-SSSS-HHHHHHHHHHHHHTTSEHHHHEEECCGETTCEEEEEEE-TT--EEEEEEEEETTEEEEEEE
T ss_pred CCCEEEEEcccCCCCCCCCHHHHHHHHHHHHhcCccccccccccccCCccceEEEEEcCCCCEEEEEEEcCCCcEEEEEE
Confidence 49999999999999997 9999999999985421 0 0 12222 9999999
Q ss_pred eeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHHh
Q 044326 50 NVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVL 87 (102)
Q Consensus 50 ~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL 87 (102)
+|+||++||.||++||+||.++ ++||+|+|.|||
T Consensus 99 ~a~sR~~Fa~Gal~Aa~~l~~~----~~~G~y~m~dvL 132 (132)
T PF05173_consen 99 RAHSRSIFAEGALRAARWLAGK----KKPGLYSMDDVL 132 (132)
T ss_dssp EESSTHHHHHHHHHHHHHHTTS----SSSEEE-HHHHC
T ss_pred EeCCHHHHHHHHHHHHHHHhcC----CCCCEEehHHhC
Confidence 9999999999999999999985 268999999997
Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 1YL6_B 1YL5_A 1YL7_C 1P9L_B 1C3V_B ....
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=99.97 E-value=4.6e-32 Score=213.42 Aligned_cols=84 Identities=24% Similarity=0.351 Sum_probs=71.9
Q ss_pred CCCceEEEEccccCCCCCh-hhHHHHHHHHHHhc-CCC---------------CCCCce---------------------
Q 044326 1 FSGYFLQVLESHQAGKLDT-SGTAKAVISSFQKL-RVS---------------FDMDQV--------------------- 42 (102)
Q Consensus 1 f~~yDieI~E~HH~~K~Da-SGTA~~La~~i~~~-g~~---------------~~~~~i--------------------- 42 (102)
|++|||||+|+||++|+|| ||||++|++.|++. +.+ ..+.+|
T Consensus 144 l~~~DiEIiE~HHr~K~DAPSGTAl~lae~ia~~~~~~~~~~~v~~r~G~~g~r~~~~Igi~svR~G~ivG~H~V~F~~~ 223 (266)
T COG0289 144 LDDYDIEIIEAHHRHKKDAPSGTALKLAEAIAEARGQDLKDEAVYGREGATGARKEGEIGIHSVRGGDIVGEHEVIFAGE 223 (266)
T ss_pred cCCCCEEehhhhcccCCCCCcHHHHHHHHHHHHhhccccccceeecccCCcCCCCCCCceeEEeecCCcceeEEEEEecC
Confidence 4689999999999999998 99999999999863 311 011123
Q ss_pred -EEEEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHHhcC
Q 044326 43 -VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLRE 89 (102)
Q Consensus 43 -e~Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL~~ 89 (102)
|+|||+|+|+||.+||.||++||+||.+| +||+|+|.|||++
T Consensus 224 GE~iei~H~A~sR~~Fa~Gal~aa~wi~~k-----~~g~Y~m~dvL~l 266 (266)
T COG0289 224 GERIEIRHRATSRDSFARGALLAARWLVGK-----PPGLYDMEDVLGL 266 (266)
T ss_pred CcEEEEEEeeccHHHHHHHHHHHHHHHhCC-----CCCccchHHhhcc
Confidence 99999999999999999999999999987 6899999999963
>TIGR00036 dapB dihydrodipicolinate reductase
Back Show alignment and domain information
Probab=99.97 E-value=8.2e-31 Score=202.68 Aligned_cols=83 Identities=25% Similarity=0.408 Sum_probs=70.4
Q ss_pred CCCceEEEEccccCCCCCh-hhHHHHHHHHHHhc-CCC------C---------CCCce---------------------
Q 044326 1 FSGYFLQVLESHQAGKLDT-SGTAKAVISSFQKL-RVS------F---------DMDQV--------------------- 42 (102)
Q Consensus 1 f~~yDieI~E~HH~~K~Da-SGTA~~La~~i~~~-g~~------~---------~~~~i--------------------- 42 (102)
|++||+||+|+||++|+|+ ||||++|++.|++. +.+ + ..++|
T Consensus 145 l~~~dieI~E~HH~~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~i~i~s~R~g~i~g~h~v~f~~~ 224 (266)
T TIGR00036 145 LGDYDIEIIELHHRHKKDAPSGTALKTAEMIAEARGERLKNVAVTEREGLTGERGREEIGIHAVRGGDVVGEHTVMFAGD 224 (266)
T ss_pred ccCCCEEeeeeccCCCCCCCCHHHHHHHHHHHHhhccccccCccccccCCcCCCCCCccceEEEecCCceEEEEEEEcCC
Confidence 5789999999999999997 99999999998742 110 0 01222
Q ss_pred -EEEEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHHhc
Q 044326 43 -VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLR 88 (102)
Q Consensus 43 -e~Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL~ 88 (102)
|+|||+|+|+||++||.||++||+||.+| +||+|+|+|||+
T Consensus 225 ~e~i~i~H~a~~R~~fa~Gal~Aa~~l~~~-----~~g~y~m~dvl~ 266 (266)
T TIGR00036 225 GERLEITHRASSRACFANGAVRAARWLADK-----EAGVYDMEDVLD 266 (266)
T ss_pred CeEEEEEEEECcHHHhHHHHHHHHHHHcCC-----CCcEEeHHHhcC
Confidence 99999999999999999999999999987 689999999983
>PRK00048 dihydrodipicolinate reductase; Provisional
Back Show alignment and domain information
Probab=99.97 E-value=1.2e-30 Score=200.31 Aligned_cols=83 Identities=24% Similarity=0.384 Sum_probs=69.8
Q ss_pred CCCceEEEEccccCCCCCh-hhHHHHHHHHHHhc-CCCC---------------CCCce---------------------
Q 044326 1 FSGYFLQVLESHQAGKLDT-SGTAKAVISSFQKL-RVSF---------------DMDQV--------------------- 42 (102)
Q Consensus 1 f~~yDieI~E~HH~~K~Da-SGTA~~La~~i~~~-g~~~---------------~~~~i--------------------- 42 (102)
|++||+||+|+||++|+|+ ||||++|++.|.+. +.++ .+.+|
T Consensus 135 l~~~d~ei~E~HH~~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~R~g~~~g~h~v~f~~~ 214 (257)
T PRK00048 135 LGDYDIEIIEAHHRHKVDAPSGTALKLAEAIAEARGRDLKEVAVYGREGATGARVKGEIGIHSVRGGDIVGEHEVIFAGD 214 (257)
T ss_pred cCCCCEEEEEccCCCCCCCCCHHHHHHHHHHHHhhcccccccceeccCCccCCcCCCCccEEEEEcCCceEEEEEEEecC
Confidence 4459999999999999997 99999999998642 2110 01122
Q ss_pred -EEEEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHHhc
Q 044326 43 -VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLR 88 (102)
Q Consensus 43 -e~Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL~ 88 (102)
|+|+|+|+|+||++||.||++||+||.+| +||+|+|.|||+
T Consensus 215 ~e~i~i~H~a~~R~~fa~Gal~aa~~~~~~-----~~g~y~~~d~l~ 256 (257)
T PRK00048 215 GERIEIRHDATSRMSFAPGALLAARWLVGK-----KPGLYGMEDVLG 256 (257)
T ss_pred CcEEEEEEEECcHHhHHHHHHHHHHHHhCC-----CCcEECHHHhhC
Confidence 99999999999999999999999999987 589999999984
Homologous Structure Templates
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
ID Alignment Graph Length
Definition
Probability
Query 102
1vm6_A 228
DHPR, dihydrodipicolinate reductase; TM1520, struc
99.97
4f3y_A 272
DHPR, dihydrodipicolinate reductase; structural ge
99.97
3qy9_A 243
DHPR, dihydrodipicolinate reductase; rossmann fold
99.97
1dih_A 273
Dihydrodipicolinate reductase; oxidoreductase; HET
99.97
3ijp_A 288
DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,
99.97
1p9l_A 245
Dihydrodipicolinate reductase; oxidoreductase, lys
99.96
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
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Probab=99.97 E-value=6.8e-32 Score=207.19 Aligned_cols=84 Identities=27% Similarity=0.409 Sum_probs=71.1
Q ss_pred CCCceEEEEccccCCCCCh-hhHHHHHHHHHHhcCCCC---------CCCce------EEEEEEEeeCCchhhHHHHHHH
Q 044326 1 FSGYFLQVLESHQAGKLDT-SGTAKAVISSFQKLRVSF---------DMDQV------VSFQFQHNVCGRSIYAEGTVDA 64 (102)
Q Consensus 1 f~~yDieI~E~HH~~K~Da-SGTA~~La~~i~~~g~~~---------~~~~i------e~Iel~H~A~sR~~FA~GAv~A 64 (102)
|++|||||+|+||++|+|+ ||||++|++.|.. ++.+ .+.+| |+|||+|+|+||++||.||++|
T Consensus 128 l~~ydiEIiE~HH~~K~DAPSGTAl~lae~i~~-~I~i~svR~g~ivg~H~V~F~~~gE~iei~H~a~sR~~Fa~Gal~A 206 (228)
T 1vm6_A 128 LEDWDVEIVETHHRFKKDAPSGTAILLESALGK-SVPIHSLRVGGVPGDHVVVFGNIGETIEIKHRAISRTVFAIGALKA 206 (228)
T ss_dssp TTTSEEEEEEEECTTCCCSSCHHHHHHHHHTTS-CCCEEEEECTTCCCEEEEEEECSSEEEEEEEEECCTHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCCCCCCHHHHHHHHhccc-CCCEEEEECCCCcEEEEEEEeCCCcEEEEEEEeCcHHHhHhHHHHH
Confidence 4689999999999999997 9999999999842 1111 11122 9999999999999999999999
Q ss_pred HHHhhccccCCCCCCceehHHHhcCC
Q 044326 65 LLFLSKKVQSKADKCISNMIDVLREG 90 (102)
Q Consensus 65 A~wL~~k~~~~~~~G~Y~M~DvL~~g 90 (102)
|+||.+| +||+|+|+|||+.|
T Consensus 207 a~~l~~~-----~~G~Y~m~dvL~~g 227 (228)
T 1vm6_A 207 AEFLVGK-----DPGMYSFEEVIFGG 227 (228)
T ss_dssp HHHHTTC-----CSEEECHHHHHTC-
T ss_pred HHHHhcC-----CCCEecHHHHhcCC
Confidence 9999987 68999999999876
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Back Show alignment and structure
Probab=99.97 E-value=2.5e-31 Score=205.92 Aligned_cols=83 Identities=30% Similarity=0.436 Sum_probs=71.5
Q ss_pred CCceEEEEccccCCCCCh-hhHHHHHHHHHHh-cCCC---------------CCCCce----------------------
Q 044326 2 SGYFLQVLESHQAGKLDT-SGTAKAVISSFQK-LRVS---------------FDMDQV---------------------- 42 (102)
Q Consensus 2 ~~yDieI~E~HH~~K~Da-SGTA~~La~~i~~-~g~~---------------~~~~~i---------------------- 42 (102)
++|||||+|+||++|+|+ ||||++|++.|.+ ++.+ ...++|
T Consensus 150 ~~~diei~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~r~g~~g~r~~~~i~i~s~R~g~ivg~h~v~f~~~~ 229 (272)
T 4f3y_A 150 QGYDIEIIEAHHRHKVDAPSGTALMMGETIAAATGRSLDDCAVYGRHGVTGERDPSTIGFSAIRGGDIVGDHTVLFAGIG 229 (272)
T ss_dssp SSCEEEEEEEECTTCCSSSCHHHHHHHHHHHHTTTCCHHHHEEECCCSCCCSCCTTCEEEEEEECTTCCEEEEEEEECSS
T ss_pred cCCCEEEEEecCCCCCCCCCHHHHHHHHHHHHHhCcccccccccccccccCCCCCCccCEEEEECCCCceEEEEEEcCCC
Confidence 589999999999999997 9999999999874 2321 112233
Q ss_pred EEEEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHHhcC
Q 044326 43 VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLRE 89 (102)
Q Consensus 43 e~Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL~~ 89 (102)
|+|||+|+|+||++||.||++||+||.+| +||+|+|+|||++
T Consensus 230 e~i~i~H~a~~R~~fa~Ga~~Aa~~~~~~-----~~g~y~m~dvl~~ 271 (272)
T 4f3y_A 230 ERIEITHKSASRVSYAQGALRAARFLAGR-----DAGFFDMQDVLGL 271 (272)
T ss_dssp EEEEEEEEECCTHHHHHHHHHHHHHHHTC-----SSEEECHHHHTTC
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHhcC-----CCcEEcHHHHhCC
Confidence 99999999999999999999999999987 6899999999975
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Back Show alignment and structure
Probab=99.97 E-value=2.2e-31 Score=203.54 Aligned_cols=81 Identities=20% Similarity=0.357 Sum_probs=69.1
Q ss_pred CCCceEEEEccccCCCCCh-hhHHHHHHHHHHhcCCCC-------------CCCce----------------------EE
Q 044326 1 FSGYFLQVLESHQAGKLDT-SGTAKAVISSFQKLRVSF-------------DMDQV----------------------VS 44 (102)
Q Consensus 1 f~~yDieI~E~HH~~K~Da-SGTA~~La~~i~~~g~~~-------------~~~~i----------------------e~ 44 (102)
|++|||||+|+||++|+|+ ||||++|++.|..++..+ +.++| |+
T Consensus 127 l~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~r~~~~~~r~~~~i~i~s~R~g~ivg~h~v~f~~~~e~ 206 (243)
T 3qy9_A 127 LDDFDIELTEAHHNKKVDAPSGTLEKLYDVIVSLKENVTPVYDRHELNEKRQPQDIGIHSIRGGTIVGEHEVLFAGTDET 206 (243)
T ss_dssp TTTSEEEEEEEECTTCCSSSCHHHHHHHHHHHHHSTTCEEECCCTTTCCCCCTTEEEEEEEECTTCCEEEEEEEEETTEE
T ss_pred cCCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHhcCcccccccccccccCCccCCcceEEEEECCCCcEEEEEEEcCCCcE
Confidence 4569999999999999997 999999999994333211 12233 99
Q ss_pred EEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHH
Q 044326 45 FQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDV 86 (102)
Q Consensus 45 Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~Dv 86 (102)
|||+|+|+||++||.||++||+||.+| +||+|+|+||
T Consensus 207 i~i~H~a~sR~~Fa~Ga~~Aa~~l~~~-----~~g~y~m~dv 243 (243)
T 3qy9_A 207 IQITHRAQSKDIFANGAIQAAERLVNK-----PNGFYTFDNL 243 (243)
T ss_dssp EEEEEEESCTHHHHHHHHHHHHHHTTS-----CSEEECTTTC
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHHccC-----CCcEeccccC
Confidence 999999999999999999999999987 6899999996
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Back Show alignment and structure
Probab=99.97 E-value=3.8e-31 Score=203.79 Aligned_cols=83 Identities=28% Similarity=0.395 Sum_probs=71.3
Q ss_pred CCceEEEEccccCCCCCh-hhHHHHHHHHHHh-cCCCC---------------CCCce----------------------
Q 044326 2 SGYFLQVLESHQAGKLDT-SGTAKAVISSFQK-LRVSF---------------DMDQV---------------------- 42 (102)
Q Consensus 2 ~~yDieI~E~HH~~K~Da-SGTA~~La~~i~~-~g~~~---------------~~~~i---------------------- 42 (102)
++|||||+|+||++|+|+ ||||+++++.|.+ ++.++ ..++|
T Consensus 149 ~~~dieiiE~Hh~~K~DaPSGTA~~~ae~i~~~~~~~~~~~~~~~r~~~~~~r~~~~i~i~s~R~g~vvg~h~v~f~~~g 228 (273)
T 1dih_A 149 DYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIG 228 (273)
T ss_dssp TTSEEEEEEEECTTCCSSSCHHHHHHHHHHHHHTTCCGGGTEECCCCSCCCSCCTTCEEEEEEECTTCCEEEEEEEEETT
T ss_pred CCCCEEEEEeecCCCCCCCCHHHHHHHHHHHHhhCCCccccccccccCccCCCCCCcceEEEEeCCCCCccEEEEEcCCC
Confidence 579999999999999997 9999999999964 23211 12333
Q ss_pred EEEEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHHhcC
Q 044326 43 VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLRE 89 (102)
Q Consensus 43 e~Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL~~ 89 (102)
|+|||+|+|+||++||.||++||+||.+| +||+|+|+|||++
T Consensus 229 e~i~i~H~a~~R~~fa~Ga~~Aa~~l~~~-----~~g~y~m~dvl~l 270 (273)
T 1dih_A 229 ERLEITHKASSRMTFANGAVRSALWLSGK-----ESGLFDMRDVLDL 270 (273)
T ss_dssp EEEEEEEEECSTHHHHHHHHHHHHHHTTC-----CSSEECHHHHTTG
T ss_pred cEEEEEEEeCCHHHHHHHHHHHHHHHhcC-----CCCEEcHHHhhCC
Confidence 99999999999999999999999999987 6899999999965
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Back Show alignment and structure
Probab=99.97 E-value=7.7e-31 Score=205.74 Aligned_cols=83 Identities=25% Similarity=0.392 Sum_probs=71.5
Q ss_pred CCceEEEEccccCCCCCh-hhHHHHHHHHHHh-cCCC---------------CCCCce----------------------
Q 044326 2 SGYFLQVLESHQAGKLDT-SGTAKAVISSFQK-LRVS---------------FDMDQV---------------------- 42 (102)
Q Consensus 2 ~~yDieI~E~HH~~K~Da-SGTA~~La~~i~~-~g~~---------------~~~~~i---------------------- 42 (102)
++|||||+|+||++|+|+ ||||++|++.|.+ ++.+ ..+++|
T Consensus 165 ~~~dieIiE~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~r~g~~g~r~~~~i~i~s~R~g~ivg~h~V~f~~~~ 244 (288)
T 3ijp_A 165 DDFDIEIYEMHHANKVDSPSGTALLLGQAAAEGRNIMLKNVSVNGRSGHTGKREKGTIGFACSRGGTVIGDHSITFAGEN 244 (288)
T ss_dssp TTSEEEEEEEECTTCCCSSCHHHHHHHHHHHHHTTSCHHHHEEECGGGCCSCCCTTCEEEEEEECTTCCEEEEEEEEETT
T ss_pred CCCCEEEEEccCCCCCCCCCHHHHHHHHHHHHHhCCCcccccccccccccCCcCCCCccEEEEECCCCCEEEEEEecCCC
Confidence 589999999999999997 9999999999863 2321 112333
Q ss_pred EEEEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHHhcC
Q 044326 43 VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLRE 89 (102)
Q Consensus 43 e~Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL~~ 89 (102)
|+|||+|+|+||++||.||++||+||.+| +||+|+|+|||++
T Consensus 245 e~i~i~H~a~sR~~Fa~Ga~~Aa~~l~~~-----~~g~y~m~dvL~~ 286 (288)
T 3ijp_A 245 ERIVLSHIAQERSIFANGALKAALWAKNH-----ENGLYSMLDVLGL 286 (288)
T ss_dssp EEEEEEEEECCTHHHHHHHHHHHHHHTTC-----CSEEECHHHHHCC
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHhcC-----CCcEEeHHHHhCc
Confidence 99999999999999999999999999987 6899999999975
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Back Show alignment and structure
Probab=99.96 E-value=8e-29 Score=189.48 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=67.3
Q ss_pred eEEEEccccCCCCCh-hhHHHHHHHHHHhc-C-CC----C---------C--CCce----------------------EE
Q 044326 5 FLQVLESHQAGKLDT-SGTAKAVISSFQKL-R-VS----F---------D--MDQV----------------------VS 44 (102)
Q Consensus 5 DieI~E~HH~~K~Da-SGTA~~La~~i~~~-g-~~----~---------~--~~~i----------------------e~ 44 (102)
||||+|+||++|+|+ ||||++|++.|.+. + .+ . . .++| |+
T Consensus 125 dieIiE~HH~~K~DaPSGTA~~lae~i~~~~~~~~~~~~~~~~~~~g~r~~~~~~i~i~s~R~g~ivg~h~V~f~~~~e~ 204 (245)
T 1p9l_A 125 SAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGET 204 (245)
T ss_dssp EEEEEEEECTTCCSSSCHHHHHHHHHHHHHTTTSCCCCCCCCSCCTTTTCEEETTEEEEEEECTTCCEEEEEEEEETTEE
T ss_pred CEEEEECcccCCCCCCCHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCcceEEEEECCCCCeEEEEEEcCCCcE
Confidence 999999999999997 99999999999752 2 10 0 0 0233 99
Q ss_pred EEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCC-ceehHHHhcCC
Q 044326 45 FQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKC-ISNMIDVLREG 90 (102)
Q Consensus 45 Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G-~Y~M~DvL~~g 90 (102)
|||+|+|+||++||.||++||+||.+ +|| +|+|+|||+++
T Consensus 205 i~i~H~a~sR~~Fa~Ga~~Aa~~l~~------~~Gl~y~m~dvl~l~ 245 (245)
T 1p9l_A 205 LTIRHDSLDRTSFVPGVLLAVRRIAE------RPGLTVGLEPLLDLH 245 (245)
T ss_dssp EEEEEEECSGGGGHHHHHHHHHHGGG------SCEEEESSHHHHSCC
T ss_pred EEEEEEeCchhhhHHHHHHHHHHHhc------CCCCEEcHHHhhCCC
Confidence 99999999999999999999999984 489 69999999754
Homologous Structure Domains