Citrus Sinensis ID: 044408

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
WFSLTVDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQVFRNNFKIEPYQDLSDLPPPNC
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
WFSLTVDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGsqvfrnnfkiepyqdlsdlpppnc
Flexible Loop (DISEMBL)
WFSLTVDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQVFRNNFKIepyqdlsdlpppnc
Low Complexity Region (SEG)
WFSLTVDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQVFRNNFKIEPYQDLSDLPPPNC
Disordered region (IsUnstruct)
*FSLTVDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQVFRNNFKIEPY***********
Disordered Region (DISOPRED)
WFSLTVDWISHMKL******NVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQ*****************PPPNC
Disordered Region (DISEMBL)
WFSLTVDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQVFRNNFKIEPYQDLSDLPPPNC
Disordered Region (DISPRO)
WFSLTVDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQVFR*******************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
WFSLTVDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQVFRNNFKIEPYQDLSDLPPPNC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
Q39065	170	Copper transporter 1 OS=A	yes	no	0.913	0.5	0.428	5e-15
Q9STG2	158	Copper transporter 2 OS=A	no	no	0.946	0.556	0.413	3e-14
Q8GWP3	145	Copper transporter 6 OS=A	no	no	0.903	0.579	0.406	9e-13
Q9FGU8	151	Copper transporter 3 OS=A	no	no	0.731	0.450	0.485	1e-10
Q8SAA5	145	Copper transporter 4 OS=A	no	no	0.752	0.482	0.410	6e-08
Q7XTF8	184	Copper transporter 6 OS=O	yes	no	0.473	0.239	0.613	1e-07
Q10KT6	183	Copper transporter 4 OS=O	yes	no	0.451	0.229	0.642	5e-07
Q94EE4	161	Copper transporter 1 OS=O	yes	no	0.688	0.397	0.409	5e-06
Q60EN8	151	Copper transporter 2 OS=O	no	no	0.408	0.251	0.605	0.0002

>sp|Q39065|COPT1_ARATH Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 6/91 (6%)

Query: 6   VDWISHMKLIKSGIN---NVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYS 62
            +W++H  L++       N A+G+++T +Y  R GLAYL ML VMSFN GV L A+AG++
Sbjct: 81  TEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHA 140

Query: 63  AGFFIFGSQVFRNNFKIEPYQDLSDLPPPNC 93
            GF +FGSQ FRN       +  + +PP  C
Sbjct: 141 VGFMLFGSQTFRNT---SDDRKTNYVPPSGC 168

Copper transporter involved in copper acquisition and transport in leaves. Required for copper homeostasis and normal plant growth and development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9STG2|COPT2_ARATH Copper transporter 2 OS=Arabidopsis thaliana GN=COPT2 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 4/92 (4%)

Query: 2   FSLTVDWISHMKLIK-SGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAG 60
            ++  +W++H  +++ SG  N A+G+ +T +Y  + GL+YL ML VMSFN GV + A+AG
Sbjct: 65  LAVIAEWLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAIAG 124

Query: 61  YSAGFFIFGSQVFRNNFKIEPYQDLSDLPPPN 92
           Y  GFF+FGS  F+   K    Q  ++L PP+
Sbjct: 125 YGVGFFLFGSTTFK---KPSDDQKTAELLPPS 153

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWP3|COPT6_ARATH Copper transporter 6 OS=Arabidopsis thaliana GN=COPT6 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 57/86 (66%), Gaps = 2/86 (2%)

Query: 2   FSLTVDWISHMKLIKS-GINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAG 60
            ++ V+W++H  +++  G  + A G+++T +Y  + GLAYL ML VMSFN GV + A+AG
Sbjct: 60  LAVIVEWLAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAG 119

Query: 61  YSAGFFIFGSQVFRNNFKIE-PYQDL 85
           ++ GF +FGS  F+N    E P++ L
Sbjct: 120 FAVGFMLFGSTAFKNPSDDEKPFEQL 145

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGU8|COPT3_ARATH Copper transporter 3 OS=Arabidopsis thaliana GN=COPT3 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 46/68 (67%)

Query: 7   DWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFF 66
           + +S    +KSG  ++  G+L+T +Y  R  L+YL ML VMSFN GV +AA+AG+  GF 
Sbjct: 70  ECLSRCGFMKSGPASLGGGLLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFM 129

Query: 67  IFGSQVFR 74
           IFGS+ FR
Sbjct: 130 IFGSRAFR 137

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8SAA5|COPT4_ARATH Copper transporter 4 OS=Arabidopsis thaliana GN=COPT4 PE=2 SV=2

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 3/73 (4%)

Query: 7   DWI---SHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSA 63
           +W+   S    IK G + +A    RT MY  + G +YL +L V+SFN GV LAA+ G++ 
Sbjct: 70  EWLARCSDASSIKQGADKLAKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHAL 129

Query: 64  GFFIFGSQVFRNN 76
           GF +F  + FRN 
Sbjct: 130 GFAVFRGRAFRNR 142

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XTF8|COPT6_ORYSJ Copper transporter 6 OS=Oryza sativa subsp. japonica GN=COPT6 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 35/44 (79%)

Query: 29  TLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQV 72
           T ++A R G+AYL ML VMSFN+GVLLAAVAG++ GF +  S+V
Sbjct: 115 TAVHAARMGMAYLVMLAVMSFNVGVLLAAVAGHALGFLLARSRV 158

Involved in the transport of copper.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10KT6|COPT4_ORYSJ Copper transporter 4 OS=Oryza sativa subsp. japonica GN=COPT4 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 26  ILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFI 67
           +L   ++A R GLAYL ML VMSFN GVLLAAVAG++AGF +
Sbjct: 103 LLAAGVHAARMGLAYLVMLAVMSFNAGVLLAAVAGHAAGFLL 144

Involved in the transport of copper.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94EE4|COPT1_ORYSJ Copper transporter 1 OS=Oryza sativa subsp. japonica GN=COPT1 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 24  SGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQVFRNNFKIEPYQ 83
            G+ R  ++  R G+AYL ML +MSFN GV L AVAG++AGF  F + +     ++E  +
Sbjct: 95  GGLARAAVHTVRVGVAYLLMLALMSFNGGVFLVAVAGHAAGFLAFRAGLCGGPAQVE--E 152

Query: 84  DLSDLP 89
           D  + P
Sbjct: 153 DRKNDP 158

Involved in the transport of copper, in cooperation with SWEET11 and COPT2. Contributes to the removal of copper (Cu) from xylem, and thus to the sensitivity toward bacterial pathogens such as X.oryzae pv. oryzae (Xoo).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q60EN8|COPT2_ORYSJ Copper transporter 2 OS=Oryza sativa subsp. japonica GN=COPT2 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 29/38 (76%)

Query: 31  MYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIF 68
           ++A R G+AYL ML +MSFN GV LA VAG++AGF  F
Sbjct: 90  VHAVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAF 127

Involved in the transport of copper, in cooperation with SWEET11 and COPT1. Contributes to the removal of copper (Cu) from xylem, and thus to the sensitivity toward bacterial pathogens such as X.oryzae pv. oryzae (Xoo).

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
255558890	113	copper transporter, putative [Ricinus co	0.967	0.796	0.637	6e-25
225434744	173	PREDICTED: copper transporter 1 [Vitis v	0.989	0.531	0.554	7e-25
297745977	133	unnamed protein product [Vitis vinifera]	0.978	0.684	0.560	9e-25
224104365	155	copper transporter [Populus trichocarpa]	0.946	0.567	0.550	4e-21
449455064	130	PREDICTED: copper transporter 1-like [Cu	0.967	0.692	0.494	8e-20
449510904	135	PREDICTED: copper transporter 1-like [Cu	0.978	0.674	0.478	2e-19
224104361	162	copper transporter [Populus trichocarpa]	0.946	0.543	0.516	2e-19
449455066	159	PREDICTED: copper transporter 1-like iso	0.924	0.540	0.5	3e-18
297745980	160	unnamed protein product [Vitis vinifera]	0.978	0.568	0.450	2e-17
225434750	177	PREDICTED: copper transporter 1 [Vitis v	0.978	0.514	0.450	2e-17

>gi|255558890|ref|XP_002520468.1| copper transporter, putative [Ricinus communis] gi|223540310|gb|EEF41881.1| copper transporter, putative [Ricinus communis]

 Score =  117 bits (294), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 69/91 (75%), Gaps = 1/91 (1%)

Query: 3   SLTVDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYS 62
           ++ V+W+SH +LIK G NNV +G+ +T +YA R  LA+L ML VMSF+ GVLLAAVAGYS
Sbjct: 24  AIAVEWLSHARLIKIGTNNVLAGLQQTAIYAIRVTLAFLVMLAVMSFDTGVLLAAVAGYS 83

Query: 63  AGFFIFGSQVFRNNFKIEPYQDLSDLPPPNC 93
            GF IFGSQVFR    IEPYQD  DLPP NC
Sbjct: 84  IGFLIFGSQVFRKP-NIEPYQDSIDLPPLNC 113

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434744|ref|XP_002280088.1| PREDICTED: copper transporter 1 [Vitis vinifera] gi|321496082|gb|ADW93918.1| copper transporter [Vitis vinifera]

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 69/92 (75%)

Query: 2   FSLTVDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGY 61
            S+ V+W+SH + IKS  N + +G+L+T MY  R GLAYL ML VMSFN+GV L A+AGY
Sbjct: 82  LSMLVEWLSHTRFIKSTTNKLVAGLLQTAMYGLRVGLAYLVMLAVMSFNVGVFLVAIAGY 141

Query: 62  SAGFFIFGSQVFRNNFKIEPYQDLSDLPPPNC 93
           + GF +FGS+VFR++ ++ PY+  SDLPP NC
Sbjct: 142 TTGFLLFGSRVFRDSSEMLPYEKASDLPPLNC 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745977|emb|CBI16033.3| unnamed protein product [Vitis vinifera]

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 69/91 (75%)

Query: 3   SLTVDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYS 62
           S+ V+W+SH + IKS  N + +G+L+T MY  R GLAYL ML VMSFN+GV L A+AGY+
Sbjct: 43  SMLVEWLSHTRFIKSTTNKLVAGLLQTAMYGLRVGLAYLVMLAVMSFNVGVFLVAIAGYT 102

Query: 63  AGFFIFGSQVFRNNFKIEPYQDLSDLPPPNC 93
            GF +FGS+VFR++ ++ PY+  SDLPP NC
Sbjct: 103 TGFLLFGSRVFRDSSEMLPYEKASDLPPLNC 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104365|ref|XP_002313412.1| copper transporter [Populus trichocarpa] gi|222849820|gb|EEE87367.1| copper transporter [Populus trichocarpa]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 68/89 (76%), Gaps = 1/89 (1%)

Query: 2   FSLTVDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGY 61
            ++ V+W+SH +L+K G NNVA+G+++ LM+A R GLAY+ ML VMSFN GV + AVAG+
Sbjct: 65  LAVLVEWLSHCRLVKPGSNNVAAGLIQALMHAVRVGLAYMVMLAVMSFNGGVFIVAVAGH 124

Query: 62  SAGFFIFGSQVFRNNFKIEPYQDLSDLPP 90
             GFFIFGS+VF++  ++ PY   SDLPP
Sbjct: 125 LVGFFIFGSRVFKDT-EMPPYHKTSDLPP 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455064|ref|XP_004145273.1| PREDICTED: copper transporter 1-like [Cucumis sativus] gi|449471515|ref|XP_004153332.1| PREDICTED: copper transporter 1-like [Cucumis sativus]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 69/93 (74%), Gaps = 3/93 (3%)

Query: 3   SLTVDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYS 62
           + TV+W+SH K   S ++N+ +G+++T++Y  R GLA++ ML VMS+N+G+LLAAV GYS
Sbjct: 39  AFTVEWLSHTKFTTSAMDNLTAGLVQTILYGIRVGLAFIVMLAVMSYNVGILLAAVTGYS 98

Query: 63  AGFFIFGSQVFRNNFKIEPYQDLS--DLPPPNC 93
            GF ++GS++F N  KI+P  +L   DLPP NC
Sbjct: 99  IGFLVYGSKIF-NRSKIDPNLNLDSLDLPPLNC 130

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449510904|ref|XP_004163806.1| PREDICTED: copper transporter 1-like [Cucumis sativus]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 69/94 (73%), Gaps = 3/94 (3%)

Query: 2   FSLTVDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGY 61
            + TV+W+SH K   S ++N+ +G+++T++Y  R GLA++ ML VMS+N+G+LLAAV GY
Sbjct: 43  LAFTVEWLSHTKFTTSTMDNLTAGLVQTILYGIRVGLAFIVMLAVMSYNVGILLAAVTGY 102

Query: 62  SAGFFIFGSQVFRNNFKIEPYQDLS--DLPPPNC 93
           S GF ++GS++F  + KI+P  +L   DLPP NC
Sbjct: 103 SIGFLVYGSKIFSRS-KIDPNLNLDSLDLPPLNC 135

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104361|ref|XP_002313411.1| copper transporter [Populus trichocarpa] gi|118485983|gb|ABK94836.1| unknown [Populus trichocarpa] gi|222849819|gb|EEE87366.1| copper transporter [Populus trichocarpa]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 68/91 (74%), Gaps = 3/91 (3%)

Query: 3   SLTVDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYS 62
           S+ V+W+SH +L+K G N+VA+G+++TL++A R GLAY+ ML +MSFN GV LAAVAG++
Sbjct: 75  SILVEWLSHCQLMKPGSNHVAAGLVQTLLHALRVGLAYMVMLAIMSFNGGVFLAAVAGHT 134

Query: 63  AGFFIFGSQVFRNNFKIEPYQDLSDLPPPNC 93
            GF  FGS+VF+   + +     SDLPP +C
Sbjct: 135 LGFLFFGSRVFK---RTQNPAKTSDLPPSSC 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455066|ref|XP_004145274.1| PREDICTED: copper transporter 1-like isoform 1 [Cucumis sativus] gi|449471163|ref|XP_004153227.1| PREDICTED: copper transporter 1-like isoform 1 [Cucumis sativus] gi|449510896|ref|XP_004163804.1| PREDICTED: copper transporter 1-like isoform 1 [Cucumis sativus]

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 62/88 (70%), Gaps = 2/88 (2%)

Query: 6   VDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGF 65
           V+W++H +LIK   +  A+G++RTLM+  R GLAYL ML VMSFN+GVLL A+ G+  GF
Sbjct: 74  VEWLTHCRLIKEDSSRAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVGVLLVAIGGHCLGF 133

Query: 66  FIFGSQVFRNNFKIEPYQDLSDLPPPNC 93
           F+FGS+ F+ +  +      SDLPP +C
Sbjct: 134 FLFGSKFFKRSEAVSGKS--SDLPPLSC 159

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745980|emb|CBI16036.3| unnamed protein product [Vitis vinifera]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 65/91 (71%)

Query: 3   SLTVDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYS 62
           ++ V+W+SH +LIK G  +VA+G+++TL++A R GL Y+ ML +MSFN G+ L AVAG++
Sbjct: 70  AIIVEWLSHFQLIKPGSTHVAAGVVQTLLHAIRMGLEYMVMLALMSFNGGMFLVAVAGHA 129

Query: 63  AGFFIFGSQVFRNNFKIEPYQDLSDLPPPNC 93
            GF +FGS++FR +  + P +    L P +C
Sbjct: 130 VGFLVFGSRLFRGSETLRPSEKAFYLSPMSC 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434750|ref|XP_002280132.1| PREDICTED: copper transporter 1 [Vitis vinifera] gi|321496076|gb|ADW93915.1| copper transporter [Vitis vinifera]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 65/91 (71%)

Query: 3   SLTVDWISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYS 62
           ++ V+W+SH +LIK G  +VA+G+++TL++A R GL Y+ ML +MSFN G+ L AVAG++
Sbjct: 87  AIIVEWLSHFQLIKPGSTHVAAGVVQTLLHAIRMGLEYMVMLALMSFNGGMFLVAVAGHA 146

Query: 63  AGFFIFGSQVFRNNFKIEPYQDLSDLPPPNC 93
            GF +FGS++FR +  + P +    L P +C
Sbjct: 147 VGFLVFGSRLFRGSETLRPSEKAFYLSPMSC 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
TAIR|locus:2153306	170	COPT1 "copper transporter 1" [	0.967	0.529	0.406	6e-16
TAIR|locus:2102752	158	COPT2 "copper transporter 2" [	0.935	0.550	0.417	1.3e-15
TAIR|locus:504955951	145	COPT6 "copper transporter 6" [	0.892	0.572	0.411	1.1e-14
TAIR|locus:2153311	151	COPT3 "copper transporter 3" [	0.709	0.437	0.5	3.1e-12
TAIR|locus:504955905	145	COPT4 "copper transporter 4" [	0.806	0.517	0.384	4.1e-10
UNIPROTKB|Q60EN8	151	COPT2 "Copper transporter 2" [	0.494	0.304	0.586	1.6e-08
UNIPROTKB|Q94EE4	161	COPT1 "Copper transporter 1" [	0.494	0.285	0.543	5.3e-08
GENEDB_PFALCIPARUM|PF14_0369	235	PF14_0369 "hypothetical protei	0.602	0.238	0.448	1.5e-05
UNIPROTKB|Q8IL79	235	PF14_0369 "Copper transporter	0.602	0.238	0.448	1.5e-05
TAIR|locus:2180474	146	COPT5 "copper transporter 5" [	0.580	0.369	0.4	3e-05

TAIR|locus:2153306 COPT1 "copper transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 39/96 (40%), Positives = 59/96 (61%)

Query:     1 WFSLTVDWISHMKLIKSGIN---NVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAA 57
             + ++  +W++H  L++       N A+G+++T +Y  R GLAYL ML VMSFN GV L A
Sbjct:    76 FLAVLTEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVA 135

Query:    58 VAGYSAGFFIFGSQVFRNNFKIEPYQDLSDLPPPNC 93
             +AG++ GF +FGSQ FRN       +  + +PP  C
Sbjct:   136 LAGHAVGFMLFGSQTFRNT---SDDRKTNYVPPSGC 168

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;IGI;ISS

GO:0006825 "copper ion transport" evidence=IGI;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0048235 "pollen sperm cell differentiation" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2102752 COPT2 "copper transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 38/91 (41%), Positives = 59/91 (64%)

Query:     3 SLTVDWISHMKLIK-SGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGY 61
             ++  +W++H  +++ SG  N A+G+ +T +Y  + GL+YL ML VMSFN GV + A+AGY
Sbjct:    66 AVIAEWLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGY 125

Query:    62 SAGFFIFGSQVFRNNFKIEPYQDLSDLPPPN 92
               GFF+FGS  F+   K    Q  ++L PP+
Sbjct:   126 GVGFFLFGSTTFK---KPSDDQKTAELLPPS 153

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

GO:0015678 "high-affinity copper ion transport" evidence=IGI

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:504955951 COPT6 "copper transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 35/85 (41%), Positives = 57/85 (67%)

Query:     3 SLTVDWISHMKLIKS-GINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGY 61
             ++ V+W++H  +++  G  + A G+++T +Y  + GLAYL ML VMSFN GV + A+AG+
Sbjct:    61 AVIVEWLAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGF 120

Query:    62 SAGFFIFGSQVFRNNFKIE-PYQDL 85
             + GF +FGS  F+N    E P++ L
Sbjct:   121 AVGFMLFGSTAFKNPSDDEKPFEQL 145

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2153311 COPT3 "copper transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 33/66 (50%), Positives = 45/66 (68%)

Query:     9 ISHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIF 68
             +S    +KSG  ++  G+L+T +Y  R  L+YL ML VMSFN GV +AA+AG+  GF IF
Sbjct:    72 LSRCGFMKSGPASLGGGLLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIF 131

Query:    69 GSQVFR 74
             GS+ FR
Sbjct:   132 GSRAFR 137

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

TAIR|locus:504955905 COPT4 "copper transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 30/78 (38%), Positives = 45/78 (57%)

Query:     1 WFSLTVDWI---SHMKLIKSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAA 57
             + +   +W+   S    IK G + +A    RT MY  + G +YL +L V+SFN GV LAA
Sbjct:    64 FLAFLAEWLARCSDASSIKQGADKLAKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAA 123

Query:    58 VAGYSAGFFIFGSQVFRN 75
             + G++ GF +F  + FRN
Sbjct:   124 IFGHALGFAVFRGRAFRN 141

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

UNIPROTKB|Q60EN8 COPT2 "Copper transporter 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 27/46 (58%), Positives = 34/46 (73%)

Query:    23 ASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIF 68
             A+  LRT ++A R G+AYL ML +MSFN GV LA VAG++AGF  F
Sbjct:    82 AAAALRTAVHAVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAF 127

GO:0005375 "copper ion transmembrane transporter activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006825 "copper ion transport" evidence=IMP

GO:0043621 "protein self-association" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

UNIPROTKB|Q94EE4 COPT1 "Copper transporter 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 25/46 (54%), Positives = 32/46 (69%)

Query:    23 ASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIF 68
             A G+ R  ++  R G+AYL ML +MSFN GV L AVAG++AGF  F
Sbjct:    94 AGGLARAAVHTVRVGVAYLLMLALMSFNGGVFLVAVAGHAAGFLAF 139

GO:0005375 "copper ion transmembrane transporter activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006825 "copper ion transport" evidence=IMP

GO:0043621 "protein self-association" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

GENEDB_PFALCIPARUM|PF14_0369 PF14_0369 "hypothetical protein" [Plasmodium falciparum (taxid:5833)]

 Score = 105 (42.0 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 26/58 (44%), Positives = 36/58 (62%)

Query:    28 RTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQVFRNNFKIEPYQDL 85
             R L+    +   YL ML VM+FN+G+ +A V G S GFFIFG++ F ++ K  P  DL
Sbjct:   165 RMLLSFVIYSWDYLLMLIVMTFNVGLFVAVVLGLSFGFFIFGNK-FVSSKKCSP-DDL 220

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|Q8IL79 PF14_0369 "Copper transporter putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 105 (42.0 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 26/58 (44%), Positives = 36/58 (62%)

Query:    28 RTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGSQVFRNNFKIEPYQDL 85
             R L+    +   YL ML VM+FN+G+ +A V G S GFFIFG++ F ++ K  P  DL
Sbjct:   165 RMLLSFVIYSWDYLLMLIVMTFNVGLFVAVVLGLSFGFFIFGNK-FVSSKKCSP-DDL 220

GO:0020011 "apicoplast" evidence=RCA

TAIR|locus:2180474 COPT5 "copper transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 22/55 (40%), Positives = 30/55 (54%)

Query:    16 KSGINNVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIFGS 70
             KSG  + A      L++     + YL ML  MSFN GV +A V G +AG+ +F S
Sbjct:    77 KSGTRSAAKAA-SVLLFGVNAAIGYLLMLAAMSFNGGVFIAIVVGLTAGYAVFRS 130

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0015680 "intracellular copper ion transport" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00091265 copper transporter (155 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	93
pfam04145	102	pfam04145, Ctr, Ctr copper transporter family	1e-10

>gnl|CDD|217925 pfam04145, Ctr, Ctr copper transporter family

 Score = 52.5 bits (127), Expect = 1e-10
 Identities = 19/43 (44%), Positives = 31/43 (72%)

Query: 26  ILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIF 68
           ++R L++  + GL+YL ML VM++N G+ LA V G + G+F+F
Sbjct: 60  LIRALLHFLQVGLSYLLMLIVMTYNGGLFLAVVLGAALGYFLF 102

The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionine probably coordinate copper during the process of metal transport. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
KOG3386	155	consensus Copper transporter [Inorganic ion transp	99.83
PF04145	144	Ctr: Ctr copper transporter family; InterPro: IPR0	99.81
PF11446	55	DUF2897: Protein of unknown function (DUF2897); In	89.85

>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]

Probab=99.83  E-value=8e-21  Score=136.96  Aligned_cols=74  Identities=31%  Similarity=0.525  Sum_probs=63.0

Q ss_pred             hHHHHHHHhhccc-----cc---c------------CCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 044408            2 FSLTVDWISHMKL-----IK---S------------GINN-VASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAG   60 (93)
Q Consensus         2 la~~~E~l~~~~~-----~k---~------------g~~~-~~~~l~~a~l~~~q~~l~YlLMLivMTfN~~i~~avilG   60 (93)
                      +|+++|+|+..|.     .+   |            .... ...|++|+++|.+|++++|+|||++||||+|+++|+++|
T Consensus        51 la~l~E~Lk~~r~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~h~~qt~l~~~Q~~~sY~LMLifMtfN~~l~Lavv~G  130 (155)
T KOG3386|consen   51 LAVLYEALKFGREKLFRWQQLRQPTGHGHEIPLSGPSKLLNSASHLIQTLLYVVQLGFSYLLMLIFMTFNGYLFLAVVLG  130 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            6899999997553     11   1            1111 567999999999999999999999999999999999999


Q ss_pred             hhhhHhhhccccccC
Q 044408           61 YSAGFFIFGSQVFRN   75 (93)
Q Consensus        61 ~~~G~~~F~~~~~~~   75 (93)
                      +++||++|+.++...
T Consensus       131 a~~G~flF~~~~~~~  145 (155)
T KOG3386|consen  131 AGVGYFLFGSLTFTP  145 (155)
T ss_pred             HhhhhheeeeccccC
Confidence            999999999998833

>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation

Probab=99.81  E-value=6.9e-21  Score=130.55  Aligned_cols=48  Identities=33%  Similarity=0.604  Sum_probs=39.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhHhhh
Q 044408           21 NVASGILRTLMYAFRFGLAYLAMLPVMSFNIGVLLAAVAGYSAGFFIF   68 (93)
Q Consensus        21 ~~~~~l~~a~l~~~q~~l~YlLMLivMTfN~~i~~avilG~~~G~~~F   68 (93)
                      +...|++|+++|++|.+++|+|||+|||||+|+|+||++|.++||++|
T Consensus        97 ~~~~~~~~~~l~~~~~~l~Y~LMLvvMTyN~~l~~aVv~G~~~G~~~F  144 (144)
T PF04145_consen   97 FWSQHLIRALLHFVQVLLGYLLMLVVMTYNVYLFIAVVLGAGLGYFLF  144 (144)
T ss_dssp             -----SHHHHHHHHHHHHHHHHHHHHHHTT--SSSHHHHHHTTSS-GG
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhheeHHHHHHHHHHHHHheeeC
Confidence            357799999999999999999999999999999999999999999998

A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.

>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins

Probab=89.85  E-value=0.26  Score=30.22  Aligned_cols=28  Identities=14%  Similarity=0.091  Sum_probs=24.1

Q ss_pred             HhhhHHHHHHHHHHhhhhHhhhcccccc
Q 044408           47 MSFNIGVLLAAVAGYSAGFFIFGSQVFR   74 (93)
Q Consensus        47 MTfN~~i~~avilG~~~G~~~F~~~~~~   74 (93)
                      |+.|+|+++.+++|..+|...-=+++.+
T Consensus         1 ~~~~~wlIIviVlgvIigNia~LK~sAk   28 (55)
T PF11446_consen    1 STWNPWLIIVIVLGVIIGNIAALKYSAK   28 (55)
T ss_pred             CcchhhHHHHHHHHHHHhHHHHHHHhcc
Confidence            7899999999999999999988655543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
2ls3_A	29	High affinity copper uptake protein 1; HCTR1 TMDS,	98.91
2ls4_A	26	High affinity copper uptake protein 1; HCTR1 TMDS,	97.98

>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}

Probab=98.91  E-value=4.7e-13  Score=72.38  Aligned_cols=28  Identities=25%  Similarity=0.492  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 044408           24 SGILRTLMYAFRFGLAYLAMLPVMSFNI   51 (93)
Q Consensus        24 ~~l~~a~l~~~q~~l~YlLMLivMTfN~   51 (93)
                      .|++|+++|++|.++||+|||++||||+
T Consensus         1 ~h~~ra~l~~~q~~~~Y~LML~~MtyN~   28 (29)
T 2ls3_A            1 KHLLQTVLHIIQVVISYFLMLIFMTYNK   28 (29)
Confidence            4789999999999999999999999997

>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}

Probab=97.98  E-value=7.1e-09  Score=54.68  Aligned_cols=24  Identities=29%  Similarity=0.546  Sum_probs=22.7

Q ss_pred             hhHHHHHHHHHHhhhhHhhhcccc
Q 044408           49 FNIGVLLAAVAGYSAGFFIFGSQV   72 (93)
Q Consensus        49 fN~~i~~avilG~~~G~~~F~~~~   72 (93)
                      ||+|+++||++|+++|||+|++++
T Consensus         1 YNg~l~iavvlGa~~Gyf~F~~~~   24 (26)
T 2ls4_A            1 YNGYLCIAVAAGAGTGYFLFSWKK   24 (26)
Confidence            899999999999999999999874

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00