Citrus Sinensis ID: 044464

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680------
MSGSGHCFVEWKEEFISQERGNRVVHYFLKDSAGESVLAVVGTERSVRHMFYVVAEEFVRVYGAENSMHAGYKWRSRREVVDWLTSMLSKQHHQGDWSKSPKHDLAQASGSPECPMNGVSARKVQVADEMQGHLSRNINGQSSDIVWSGVAWTCGKQLKHFPAFCRNGTTISIQSFVFVMAKGENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHSQVISAECVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSNRLKPFDLSKLHGYHDQPILSLLNSNTLQETNSSGHLITGVGDETTAGENVKLGIKRTRRAKGSQTFLTDNSTVGIGRGSQLMTYKPSYKKLKCGLSGMSLLSLKHIEFLPWYSAMYKVNAKIELLCQDSGIRGCWFRCIVLQVSQKQMKVRYDDVQDEDGSGNLEEWIPVYKVAKPDKLGMRCSDRPTIRPTPPDNREDLSLGIGTAVDAWWSDGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKNDLRISRDWAGDQWVDIEDKPDILSVISDTISPENKISLSSTIANDVKSDGLDSCIEVPITTKLDTVEEGKPNLASLTCSDTLPEDLDCVNEEKAPSLEQGSGQGVDHVNASGDEVHDARGNDEHEDDDDNGGKVDAEVFETSGHNDSRTTEVLMEVTA
ccccccEEEEEEEEEEEcccccEEEEEEEEcccccEEEEEEcccccccEEEEEEEHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccEEccccccccccEEEccEEEEEccEEEEEEccccEEEEEEEEEEEcccccEEEEEEEEEccccccccccccccccccEEEccccccccccEEEcEEEEEccccHHHHccccccccccEEEEEEEEEcccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccEEEEEEEEEEEEccEEEEEEccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEcccEEEEEEEEEEcccccEEEEEEcccccEEEccccccccccccccccEEEcccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHHHHHcc
ccccccEEEEEEEEEEEcccccEEEEEEEEcccccEEEEEEEccccccEEEEEEcHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHcHHHHcccEEEEEccEEEEEccccccEEEEEEEccEccccccEEEEEEEEcccccccccccccccccEEEEEccccEEEEEEEcccEEEEcHHHHHHHHHHccccccccEEEEEEEEcccccccccHHHHcccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccEEEEccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEEEEEEcccEEEEEEEcccccccccccEEEEEcHHccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEcccccEEEEEEcccccEEEEcHHHccccHEcccccEEcccccccHHHHcccccccccEEccccccccccccccccccEEcccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccEccEEEcccccccccEEEEEEEEcc
msgsghcfvewkeefisqergnrVVHYFLKDSAGESVLAVVGTERSVRHMFYVVAEEFVRVYgaensmhagykwrsRREVVDWLTSMLSkqhhqgdwskspkhdlaqasgspecpmngvsarKVQVADEMQGHlsrningqssdiVWSGVAWTcgkqlkhfpafcrngttisIQSFVFVMAKGENHYVAYLEDMyedkrgqkKVKVRWFHHnqevkgvvslrnphpkevfitphsQVISAecvdgsasvltREHFSKCLAAFPNALLARVHLCTRqfrsnrlkpfdlsklhgyhdqpilsllnsntlqetnssghlitgvgdettagenvkLGIKRtrrakgsqtfltdnstvgigrgsqlmtykpsykklkcglsgmsllslkhieflpWYSAMYKVNAKIELLCqdsgirgcwFRCIVLQVSQKQMKVryddvqdedgsgnleewipvykvakpdklgmrcsdrptirptppdnredlslgIGTAVdawwsdgwWEGVVIGVdssstdnlQVYLSGESLFlnvnkndlrisrdwagdqwvdiedkpdilSVISdtispenkislSSTIandvksdgldscievpittkldtveegkpnlasltcsdtlpedldcvneekapsleqgsgqgvdhvnasgdevhdargndeheddddnggkvDAEVFetsghndsrtTEVLMEVTA
MSGSGHCFVEWKeefisqergnRVVHYFLKDSAGESVLAVVGTERSVRHMFYVVAEEFVRVygaensmhagykwrSRREVVDWLTSMLSKQhhqgdwsksPKHDLAQASGSPECPMNGVSARKVQVADEMQGHLsrningqssdIVWSGVAWTCGKQLKHFPAFCRNGTTISIQSFVFVMAKGENHYVAYLEDMYEDKRGQKKVKVRWFHHnqevkgvvslrnpHPKEVFITPHSQVISAECVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSNRLKPFDLSKLHGYHDQPILSLLNSNTLQETNSSGhlitgvgdettagenvklgikrtrrakgsqtfltdnstvgigrgsqlmtyKPSYKKLKCGLSGMSLLSLKHIEFLPWYSAMYKVNAKIELLCQDSGIRGCWFRCIVLQVSQKQMKVRYDDVQdedgsgnleewipvykvakpdklgmrcsdrptirptppdnredlsLGIGTAVDAWWSDGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKNDLRISRDWAGDQWVDIEDKPDILSVISdtispenkislsstIANDVKSDGLDSCIEVPIttkldtveegkpnLASLTCSDTLPEDLDCVNEEKApsleqgsgqgVDHVNASGDEVHDARGNdeheddddngGKVDAEVfetsghndsrttevLMEVTA
MSGSGHCFVEWKEEFISQERGNRVVHYFLKDSAGESVLAVVGTERSVRHMFYVVAEEFVRVYGAENSMHAGYKWRSRREVVDWLTSMLSKQHHQGDWSKSPKHDLAQASGSPECPMNGVSARKVQVADEMQGHLSRNINGQSSDIVWSGVAWTCGKQLKHFPAFCRNGTTISIQSFVFVMAKGENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHSQVISAECVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSNRLKPFDLSKLHGYHDQPILSLLNSNTLQETNSSGHLITGVGDETTAGENVKLGIKRTRRAKGSQTFLTDNSTVGIGRGSQLMTYKPSYKKLKCGLSGMSLLSLKHIEFLPWYSAMYKVNAKIELLCQDSGIRGCWFRCIVLQVSQKQMKVRYDDVQDEDGSGNLEEWIPVYKVAKPDKLGMRCSDRPTIRPTPPDNREDLSLGIGTAVDAWWSDGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKNDLRISRDWAGDQWVDIEDKPDILSVISDTISPENKISLSSTIANDVKSDGLDSCIEVPITTKLDTVEEGKPNLASLTCSDTLPEDLDCVNEEKAPSLEQGSGQGVDHVNASGDEVHDARgndeheddddnggKVDAEVFETSGHNDSRTTEVLMEVTA
*****HCFVEWKEEFISQERGNRVVHYFLKDSAGESVLAVVGTERSVRHMFYVVAEEFVRVYGAENSMHAGYKWRSRREVVDWLTSML******************************************************SDIVWSGVAWTCGKQLKHFPAFCRNGTTISIQSFVFVMAKGENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHSQVISAECVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSNRLKPFDLSKLHGYHDQPILSLLNSN**********LITGV***********L************TFLTDNSTVGIGRGSQLMTYKPSYKKLKCGLSGMSLLSLKHIEFLPWYSAMYKVNAKIELLCQDSGIRGCWFRCIVLQVSQKQMKVRYDDV******GNLEEWIPVYKVAK************************LSLGIGTAVDAWWSDGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKNDLRISRDWAGDQWVDIEDKPDILSVISDTIS*********TIANDVKSDGLDSCIEVPITTKLDTV********************************************************************************************
****GHC**EWKEEFIS*ERGNRVVHYFLKDSAGESVLAVVGTERSVRHMFYVVAEEFVRVYGA*N**H**YKWRSRREVVDWLT***********************************************************IVWSGVAWTCGKQLKHFPAFCRNGTTISIQSFVFVMAKGENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEV*********HPKEVFITPHSQVISAECVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSNRLKPFDLSKLHGYHDQPI*********************************************************************************LLSLKHIEFLPWYSAMYKVNAKIELLCQDSGIRGCWFRCIVLQVSQKQMKVRYDDVQDEDGSGNLEEWIPVYKVA**************IRPTPPDNREDLSLGIGTAVDAWWSDGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKNDLRISRDWAGDQWVDIED***********************************************************************************************************************************TEVLMEVTA
MSGSGHCFVEWKEEFISQERGNRVVHYFLKDSAGESVLAVVGTERSVRHMFYVVAEEFVRVYGAENSMHAGYKWRSRREVVDWLTSM**********************GSPECPMNGVSARKVQVADEMQGHLSRNINGQSSDIVWSGVAWTCGKQLKHFPAFCRNGTTISIQSFVFVMAKGENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHSQVISAECVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSNRLKPFDLSKLHGYHDQPILSLLNSNTLQETNSSGHLITGVGDETTAGENVKLGIKRTRRAKGSQTFLTDNSTVGIGRGSQLMTYKPSYKKLKCGLSGMSLLSLKHIEFLPWYSAMYKVNAKIELLCQDSGIRGCWFRCIVLQVSQKQMKVRYDDVQDEDGSGNLEEWIPVYKVAKPDKLGMRCSDRPTIRPTPPDNREDLSLGIGTAVDAWWSDGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKNDLRISRDWAGDQWVDIEDKPDILSVISDTISPENKISLSSTIANDVKSDGLDSCIEVPITTKLDTVEEGKPNLASLTCSDTLPEDLDCVNEE***********GVDHVNASGDEVHDAR***********GGKVDAEVFETSGHNDSRTTEVLMEVTA
****GHCFVEWKEEFISQERGNRVVHYFLKDSAGESVLAVVGTERSVRHMFYVVAEEFVRVYGAENSMHAGYKWRSRREVVDWLTSMLSK*******************************************L*R***GQSSDIVWSGVAWTCGKQLKHFPAFCRNGTTISIQSFVFVMAKGENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHSQVISAECVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSNRLKPFDLSKLHGYHDQPILSLLNSN*****************************************************SQLMTYKPSYKKLKCGLSGMSLLSLKHIEFLPWYSAMYKVNAKIELLCQDSGIRGCWFRCIVLQVSQKQMKVRYDDVQDEDGSGNLEEWIPVYKVAKPDK*****SDRPTIRPTPPDNREDLSLGIGTAVDAWWSDGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKNDLRISRDWAGDQWVDIEDKPDILSVIS**************************C******TKLDTV****PNLASLTCSDTLPEDLDCVNE*************************D*****EHEDD*DNGGKVDAEVFETSGHNDSRTTEVLMEVTA
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MSGSGHCFVEWKEEFISQERGNRVVHYFLKDSAGESVLAVVGTERSVRHMFYVVAEEFVRVYGAENSMHAGYKWRSRREVVDWLTSMLSKQHHQGDWSKSPKHDLAQASGSPECPMNGVSARKVQVADEMQGHLSRNINGQSSDIVWSGVAWTCGKQLKHFPAFCRNGTTISIQSFVFVMAKGENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHSQVISAECVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSNRLKPFDLSKLHGYHDQPILSLLNSNTLQETNSSGHLITGVGDETTAGENVKLGIKRTRRAKGSQTFLTDNSTVGIGRGSQLMTYKPSYKKLKCGLSGMSLLSLKHIEFLPWYSAMYKVNAKIELLCQDSGIRGCWFRCIVLQVSQKQMKVRYDDVQDEDGSGNLEEWIPVYKVAKPDKLGMRCSDRPTIRPTPPDNREDLSLGIGTAVDAWWSDGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKNDLRISRDWAGDQWVDIEDKPDILSVISDTISPENKISLSSTIANDVKSDGLDSCIEVPITTKLDTVEEGKPNLASLTCSDTLPEDLDCVNEEKAPSLEQGSGQGVDHVNASGDEVHDARGNDEHEDDDDNGGKVDAEVFETSGHNDSRTTEVLMEVTA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query686 2.2.26 [Sep-21-2011]
Q3LHL91658 Protein winged eye OS=Dro yes no 0.137 0.056 0.314 0.0001
>sp|Q3LHL9|WGE_DROME Protein winged eye OS=Drosophila melanogaster GN=wge PE=1 SV=1 Back     alignment and function desciption
 Score = 48.9 bits (115), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%)

Query: 147  WSGVAW----TCGKQLKHFPAFCRNGT-TISI-QSFVFV-MAKGENHYVAYLEDMYEDKR 199
            W G A+      G+  K F    + G  TI++  S VF+   + +  Y+  +E M+E   
Sbjct: 1483 WYGTAYRKAGVKGRARKQFYKTIKRGKETITVGDSAVFLSTGRPDRPYIGRIESMWETTT 1542

Query: 200  GQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHS-----QVISAEC 242
            G K V+V WF+H +E  G   L+   P  +F +PH      Q IS  C
Sbjct: 1543 GNKVVRVAWFYHPEETTGCPKLK--FPGALFESPHEDENDVQTISHRC 1588
Functions in the determination of disk-specific identity, downstream of Hox genes. Overexpression induces ectopic wings with antero-posterior and dorso-ventral axes in the eye field. Overexpression is sufficient for ectopic expression of vg in eye disks.
Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query686
255563452683 DNA binding protein, putative [Ricinus c 0.983 0.988 0.652 0.0
359494305688 PREDICTED: uncharacterized protein LOC10 0.915 0.912 0.641 0.0
224061214655 predicted protein [Populus trichocarpa] 0.935 0.980 0.597 0.0
296089890651 unnamed protein product [Vitis vinifera] 0.862 0.909 0.613 0.0
297796441664 hypothetical protein ARALYDRAFT_495647 [ 0.838 0.865 0.595 0.0
356527136698 PREDICTED: uncharacterized protein LOC10 0.986 0.969 0.543 0.0
356566521697 PREDICTED: uncharacterized protein LOC10 0.913 0.899 0.567 0.0
449465164701 PREDICTED: uncharacterized protein LOC10 0.951 0.931 0.562 0.0
22327858663 agenet domain-containing protein / bromo 0.817 0.846 0.597 0.0
110737699663 hypothetical protein [Arabidopsis thalia 0.817 0.846 0.596 0.0
>gi|255563452|ref|XP_002522728.1| DNA binding protein, putative [Ricinus communis] gi|223537966|gb|EEF39579.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/694 (65%), Positives = 542/694 (78%), Gaps = 19/694 (2%)

Query: 1   MSGSGHCFVEWKEEFISQERGNRVVHYFLKDSAGESVLAVVGTERSVRHMFYVVAEEFVR 60
           M+GSGH FVEWKE+F+SQERGNRVVHYFLKDSAGES+LAVVGTERSVRHMFYVVAEEFV+
Sbjct: 1   MTGSGHYFVEWKEQFVSQERGNRVVHYFLKDSAGESILAVVGTERSVRHMFYVVAEEFVQ 60

Query: 61  VYGAENSMHAGYKWRSRREVVDWLTSMLSKQHHQGDWSKSPKHDLAQASGSPECPMNGVS 120
            YG E+S+HAG+KWRSRREVVDWLTSMLSKQH QGD SKSPKHDL Q   SPE  MNG+ 
Sbjct: 61  AYGTEHSIHAGFKWRSRREVVDWLTSMLSKQHLQGDRSKSPKHDLTQVLESPEYSMNGLG 120

Query: 121 ARKVQVADEMQGHLSRNINGQSSDIVWSGVAWTCGKQLKHFPAFCRNGTTISIQSFVFVM 180
            ++ Q      G LSRN++G +SDI+WSG+AW CGKQLKH+PAFCRNG TI+IQSFVFVM
Sbjct: 121 HQQTQ------GRLSRNLSGHNSDIIWSGIAWACGKQLKHYPAFCRNGITIAIQSFVFVM 174

Query: 181 AKGENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHSQVISA 240
           AKGENHY+AYLEDMYEDKRGQKKVKVRWFHHNQEVKGVV LRN HP EVFITP+SQVISA
Sbjct: 175 AKGENHYLAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVPLRNAHPMEVFITPYSQVISA 234

Query: 241 ECVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSNRLKPFDLSKLHGYHDQPILS 300
           ECVDG A VLTREH+ +CLAAFP+AL  R+HLC RQFRSN++KPFDLSKL GY DQPILS
Sbjct: 235 ECVDGPAIVLTREHYEECLAAFPDALSTRIHLCFRQFRSNKIKPFDLSKLRGYFDQPILS 294

Query: 301 LLNSNTLQETNSSGHLITGVGDET-TAGENVKLGIKRTRRAKGSQTFLTDNSTVGIGRGS 359
            LNS +L   +S  + +TG  DE  +  +NVKLG KRTR  K S+TF+T +S +GI  G+
Sbjct: 295 CLNSKSLPGVDSISYGLTGEEDEEFSPDDNVKLGAKRTRSGK-SETFVTGHSGIGIS-GN 352

Query: 360 QLMTYKPSYKKLKCGLSGMSLLSLKHIEFLPWYSAMYKVNAKIELLCQDSGIRGCWFRCI 419
           Q+M++ PSY  ++ G+SG  LL LK++     YS ++KV+ KIELLCQDSGIRGCWFRC 
Sbjct: 353 QMMSFGPSYLNIRFGISGKRLLPLKNVASQLRYSPLFKVDEKIELLCQDSGIRGCWFRCT 412

Query: 420 VLQVSQKQMKVRYDDVQDEDGSGNLEEWIPVYKVAKPDKLGMRCSDRPTIRPTPPDNRE- 478
           VL VS+KQ+KV+YDD++DED  GNLEEWIP +KVA PDKLGMR S RPTIRP PP N + 
Sbjct: 413 VLHVSRKQIKVQYDDLRDEDEYGNLEEWIPAFKVAVPDKLGMRFSGRPTIRPVPPQNEQT 472

Query: 479 DLSLGIGTAVDAWWSDGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKNDLRISRDWAG 538
           D +L IG+AVDAWWSDGWWEGVV G+DSS+ D LQVY  GES FL+V+K DLRISRDW G
Sbjct: 473 DHALEIGSAVDAWWSDGWWEGVVTGIDSSTDDILQVYFPGESFFLSVHKKDLRISRDWMG 532

Query: 539 DQWVDIEDKPDILSVISDTISPENKISLSSTIANDVKSDG-LDSCIEVPITTKLDTVEEG 597
           +QW+DI+ KPDIL  IS  ISP  K S+S  IA D+KSDG   SC E P + +LD++EE 
Sbjct: 533 NQWIDIQAKPDILPAISAAISPGTKTSMSPAIAKDLKSDGHAISCNEGPASAELDSIEEK 592

Query: 598 KPNLASLTCSDTLPEDLDCVNEEKAPSL--EQGSGQGVDHVNASGDEVHDARGNDEHEDD 655
           K + A+L  +D++PE++DC +++K P L  ++    G + +N   D+V     NDE + D
Sbjct: 593 KADTATLASTDSIPENMDC-DDDKMPPLSDDKADEDGGNDINVDHDKVDKIDSNDEDQVD 651

Query: 656 DDNGG---KVDAEVFETSGHNDSRTTEVLMEVTA 686
            D  G   K+D EVF+ S  N  +  E LMEVTA
Sbjct: 652 GDIKGKDDKLDIEVFDASDKN-CKAVE-LMEVTA 683

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359494305|ref|XP_002264338.2| PREDICTED: uncharacterized protein LOC100265203 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061214|ref|XP_002300373.1| predicted protein [Populus trichocarpa] gi|222847631|gb|EEE85178.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296089890|emb|CBI39709.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297796441|ref|XP_002866105.1| hypothetical protein ARALYDRAFT_495647 [Arabidopsis lyrata subsp. lyrata] gi|297311940|gb|EFH42364.1| hypothetical protein ARALYDRAFT_495647 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356527136|ref|XP_003532169.1| PREDICTED: uncharacterized protein LOC100809407 [Glycine max] Back     alignment and taxonomy information
>gi|356566521|ref|XP_003551479.1| PREDICTED: uncharacterized protein LOC100306240 [Glycine max] Back     alignment and taxonomy information
>gi|449465164|ref|XP_004150298.1| PREDICTED: uncharacterized protein LOC101209069 [Cucumis sativus] Back     alignment and taxonomy information
>gi|22327858|ref|NP_200371.2| agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|186532338|ref|NP_001119443.1| agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|334188428|ref|NP_001190547.1| agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|18087548|gb|AAL58906.1|AF462815_1 AT5g55600/MDF20_4 [Arabidopsis thaliana] gi|24111271|gb|AAN46759.1| At5g55600/MDF20_4 [Arabidopsis thaliana] gi|332009271|gb|AED96654.1| agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|332009272|gb|AED96655.1| agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|332009273|gb|AED96656.1| agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110737699|dbj|BAF00788.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query686
TAIR|locus:2162117663 AT5G55600 [Arabidopsis thalian 0.817 0.846 0.597 7.5e-192
TAIR|locus:2026874648 AT1G68580 [Arabidopsis thalian 0.692 0.733 0.341 4.1e-73
TAIR|locus:2178828 1065 AT5G58610 "AT5G58610" [Arabido 0.193 0.124 0.307 3.1e-10
TAIR|locus:2197985 695 AT1G26540 [Arabidopsis thalian 0.211 0.208 0.289 1.2e-08
TAIR|locus:2130878 2037 G2484-1 "G2484-1 protein" [Ara 0.316 0.106 0.237 2.1e-06
TAIR|locus:2200146 604 DUF2 "DOMAIN OF UNKNOWN FUNCTI 0.199 0.226 0.268 2.4e-06
TAIR|locus:2014505 670 ATDUF1 "DOMAIN OF UNKNOWN FUNC 0.326 0.334 0.258 7.1e-05
TAIR|locus:2203018517 AT1G09320 [Arabidopsis thalian 0.188 0.249 0.251 8.3e-05
TAIR|locus:2084309466 AT3G06520 [Arabidopsis thalian 0.243 0.358 0.275 0.0004
TAIR|locus:2097134380 AT3G43990 [Arabidopsis thalian 0.177 0.321 0.265 0.0006
TAIR|locus:2162117 AT5G55600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1859 (659.5 bits), Expect = 7.5e-192, P = 7.5e-192
 Identities = 345/577 (59%), Positives = 447/577 (77%)

Query:     1 MSGSGHCFVEWKEEFISQERGNRVVHYFLKDSAGESVLAVVGTERSVRHMFYVVAEEFVR 60
             M  + H FVEWKE F+SQERGNRVVHYFLKDSAGES+LAV+GTERSVRHMFYVV+EEFVR
Sbjct:     1 MCENDHHFVEWKEHFVSQERGNRVVHYFLKDSAGESILAVIGTERSVRHMFYVVSEEFVR 60

Query:    61 VYGAENSMHAGYKWRSRREVVDWLTSMLSKQHHQGDWSKSPKHDLAQASGSPECPMNGVS 120
             ++G ENS+H+G+KWRSRREVVDWLTSMLSKQ  QG+WSKSPK +  +++GSPE P NG +
Sbjct:    61 IHGPENSIHSGFKWRSRREVVDWLTSMLSKQSTQGNWSKSPKCESGESNGSPEFPSNGFT 120

Query:   121 ARKVQVADEMQGHLSRNINGQSSDIVWSGVAWTCGKQLKHFPAFCRNGTTISIQSFVFVM 180
             A++ Q ++E++  L  N+   S +I+WSG  W CGKQLKH+P+FCRNGTTI +QSFVFV+
Sbjct:   121 AQRAQASEEVR--LPINLIIHSWEIMWSGAPWMCGKQLKHYPSFCRNGTTIGVQSFVFVL 178

Query:   181 AKGENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHSQVISA 240
             +KGE+ YVAYLEDMYEDKRG KKVKVRWFH+ +EVKG V+L+NP+PKEVFITPHSQVISA
Sbjct:   179 SKGEDRYVAYLEDMYEDKRGLKKVKVRWFHYTKEVKGAVALKNPNPKEVFITPHSQVISA 238

Query:   241 ECVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSNRLKPFDLSKLHGYHDQPILS 300
             ECVDG A+VLTREH+ +C+A+FPN+LLARVH+C RQ R++++KPFDLSKL GY DQPI+S
Sbjct:   239 ECVDGPATVLTREHYEECVASFPNSLLARVHMCYRQLRNSKVKPFDLSKLRGYLDQPIMS 298

Query:   301 LLNSNTLQETNSSGHLITGVGDETTAGENVKLGIKRTRRAKGSQTFLTDNSTVGIGRGSQ 360
              L+S      + + ++     +E + GENV +G +R+ + +     ++D+          
Sbjct:   299 CLSSMEAGPVDCAMNIEED--EEWSEGENVMVGAERSMKKRAR--IMSDHL--------- 345

Query:   361 LMTYKPSYKKLKCGLSGMSLLSLKHIEFLPWYSAMYKVNAKIELLCQDSGIRGCWFRCIV 420
             L TY+ S K+LK   SG    S  +++  P Y+ + K +AKIE LCQDSGIRGCWFRC V
Sbjct:   346 LTTYESSCKRLKLNASGKRFPSPTNVQKHPCYNGVVKTDAKIEFLCQDSGIRGCWFRCTV 405

Query:   421 LQVSQKQMKVRYDDVQDEDGSGNLEEWIPVYKVAKPDKLGMRCSDRPTIRPTPPDNRED- 479
             L VS+KQ+K++YDD++DEDG GNLEEW+P +K A PDKLG+R S+RPTIRP P D +   
Sbjct:   406 LDVSRKQVKLQYDDIEDEDGYGNLEEWVPAFKSAMPDKLGIRLSNRPTIRPAPRDVKTAY 465

Query:   480 LSLGIGTAVDAWWSDGWWEGVVIGVDSSSTDNLQVYLSGESLFLNVNKNDLRISRDWAGD 539
               L IG AVDAWW+DGWWEGVVI      T++L++Y+ GE+L L V + D+RISRDW GD
Sbjct:   466 FDLTIGEAVDAWWNDGWWEGVVIATGKPDTEDLKIYIPGENLCLTVLRKDIRISRDWVGD 525

Query:   540 QWVDIEDKPDILSVISDTISPENKISLSSTIANDVKS 576
              WVDI+ KP+IL+++S   S E+K+S+ ST++ D K+
Sbjct:   526 SWVDIDPKPEILAIVSSDSSSESKLSMLSTLSKDTKA 562
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0003723 "RNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
TAIR|locus:2026874 AT1G68580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178828 AT5G58610 "AT5G58610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197985 AT1G26540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130878 G2484-1 "G2484-1 protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200146 DUF2 "DOMAIN OF UNKNOWN FUNCTION 724 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014505 ATDUF1 "DOMAIN OF UNKNOWN FUNCTION 724 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2203018 AT1G09320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084309 AT3G06520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097134 AT3G43990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00033344001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (684 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query686
cd04721130 cd04721, BAH_plant_1, BAH, or Bromo Adjacent Homol 9e-63
cd04714121 cd04714, BAH_BAHCC1, BAH, or Bromo Adjacent Homolo 3e-12
pfam01426120 pfam01426, BAH, BAH domain 1e-09
smart0074359 smart00743, Agenet, Tudor-like domain present in p 4e-09
pfam0564166 pfam05641, Agenet, Agenet domain 3e-08
smart00439121 smart00439, BAH, Bromo adjacent homology domain 4e-08
cd04713146 cd04713, BAH_plant_3, BAH, or Bromo Adjacent Homol 5e-08
cd04370123 cd04370, BAH, BAH, or Bromo Adjacent Homology doma 5e-07
cd04719128 cd04719, BAH_Orc1p_animal, BAH, or Bromo Adjacent 7e-06
>gnl|CDD|240072 cd04721, BAH_plant_1, BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information 
 Score =  204 bits (521), Expect = 9e-63
 Identities = 66/130 (50%), Positives = 96/130 (73%)

Query: 164 FCRNGTTISIQSFVFVMAKGENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRN 223
           FCRNG TIS+  FV+V+++ E+ YVAY+ED+YEDK+G K VKVRWFH   EV   +S  +
Sbjct: 1   FCRNGVTISVHDFVYVLSEEEDRYVAYIEDLYEDKKGSKMVKVRWFHTTDEVGAALSPDS 60

Query: 224 PHPKEVFITPHSQVISAECVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSNRLK 283
            +P+E+F++P+ QVIS EC+DG A+VLTREH+ K  +   N+   + + C RQ  +N++K
Sbjct: 61  VNPREIFLSPNLQVISVECIDGLATVLTREHYEKFQSVPKNSSELQAYFCYRQIDNNKVK 120

Query: 284 PFDLSKLHGY 293
           PFD+++L GY
Sbjct: 121 PFDITQLRGY 130

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions. Length = 130
>gnl|CDD|240065 cd04714, BAH_BAHCC1, BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins Back     alignment and domain information
>gnl|CDD|216495 pfam01426, BAH, BAH domain Back     alignment and domain information
>gnl|CDD|214798 smart00743, Agenet, Tudor-like domain present in plant sequences Back     alignment and domain information
>gnl|CDD|218672 pfam05641, Agenet, Agenet domain Back     alignment and domain information
>gnl|CDD|214664 smart00439, BAH, Bromo adjacent homology domain Back     alignment and domain information
>gnl|CDD|240064 cd04713, BAH_plant_3, BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>gnl|CDD|239835 cd04370, BAH, BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif) Back     alignment and domain information
>gnl|CDD|240070 cd04719, BAH_Orc1p_animal, BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 686
cd04721130 BAH_plant_1 BAH, or Bromo Adjacent Homology domain 100.0
cd04719128 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology d 99.88
cd04713146 BAH_plant_3 BAH, or Bromo Adjacent Homology domain 99.86
PF0564168 Agenet: Agenet domain; InterPro: IPR008395 This do 99.75
cd04370123 BAH BAH, or Bromo Adjacent Homology domain (also c 99.72
PF01426119 BAH: BAH domain; InterPro: IPR001025 The BAH (brom 99.65
cd04714121 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, 99.59
smart00439120 BAH Bromo adjacent homology domain. 99.55
cd04717121 BAH_polybromo BAH, or Bromo Adjacent Homology doma 99.42
cd04715159 BAH_Orc1p_like BAH, or Bromo Adjacent Homology dom 99.33
smart0074361 Agenet Tudor-like domain present in plant sequence 99.18
cd04716122 BAH_plantDCM_I BAH, or Bromo Adjacent Homology dom 99.13
cd04708202 BAH_plantDCM_II BAH, or Bromo Adjacent Homology do 98.86
cd04710135 BAH_fungalPHD BAH, or Bromo Adjacent Homology doma 98.86
smart0074361 Agenet Tudor-like domain present in plant sequence 98.78
cd04709164 BAH_MTA BAH, or Bromo Adjacent Homology domain, as 98.77
cd04760124 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain 98.75
cd04718148 BAH_plant_2 BAH, or Bromo Adjacent Homology domain 98.73
cd04712130 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, 98.63
cd04720179 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology do 98.6
KOG1886464 consensus BAH domain proteins [Transcription] 98.32
smart0033357 TUDOR Tudor domain. Domain of unknown function pre 97.45
cd04711137 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domai 96.04
smart0033357 TUDOR Tudor domain. Domain of unknown function pre 95.99
PF0564168 Agenet: Agenet domain; InterPro: IPR008395 This do 95.62
PF15057124 DUF4537: Domain of unknown function (DUF4537) 95.41
PF1171755 Tudor-knot: RNA binding activity-knot of a chromod 95.31
cd0450848 TUDOR Tudor domains are found in many eukaryotic o 95.24
PF1214885 DUF3590: Protein of unknown function (DUF3590); In 94.49
cd0450848 TUDOR Tudor domains are found in many eukaryotic o 93.12
PF0946555 LBR_tudor: Lamin-B receptor of TUDOR domain; Inter 92.47
PF07039130 DUF1325: SGF29 tudor-like domain; InterPro: IPR010 91.42
PF0085586 PWWP: PWWP domain; InterPro: IPR000313 Upon charac 91.15
smart0056196 MBT Present in Drosophila Scm, l(3)mbt, and verteb 89.95
PF0946555 LBR_tudor: Lamin-B receptor of TUDOR domain; Inter 89.33
cd0516287 PWWP The PWWP domain, named for a conserved Pro-Tr 88.08
cd0583587 Dnmt3b_related The PWWP domain is an essential com 87.97
smart0029363 PWWP domain with conserved PWWP motif. conservatio 87.06
PF06003264 SMN: Survival motor neuron protein (SMN); InterPro 86.76
PF00567121 TUDOR: Tudor domain; InterPro: IPR008191 There are 86.45
KOG1827629 consensus Chromatin remodeling complex RSC, subuni 85.34
cd0583483 HDGF_related The PWWP domain is an essential part 84.56
cd0608080 MUM1_like Mutated melanoma-associated antigen 1 (M 82.92
cd0583686 N_Pac_NP60 The PWWP domain is an essential part of 80.3
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information 
Probab=100.00  E-value=1.4e-39  Score=303.66  Aligned_cols=130  Identities=51%  Similarity=0.958  Sum_probs=125.1

Q ss_pred             cccCCeEEEEeeEEEEEecCCceeEeeehhhhcccCCCeeEEEEeeeccceeeeeecCCCCCCceEEEcCCceeeeeeee
Q 044464          164 FCRNGTTISIQSFVFVMAKGENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHSQVISAECV  243 (686)
Q Consensus       164 F~RnG~tIsVh~FVyv~aee~~~~vAYlEDmYED~kg~k~V~VRWFh~~~Ev~~~lp~~~~~~rEvf~s~~~Q~isvECi  243 (686)
                      |||||++|+|+|||||++++++.||||||+||||.+|.|||+||||++++|+.+.+|+..++++|||+|++.|+|++|||
T Consensus         1 ~~r~~~~i~vGD~V~v~~~~~~~~va~Ie~i~ed~~g~~~v~v~WF~~p~E~~~~~~~~~~~~~EvFlS~~~d~i~~~~I   80 (130)
T cd04721           1 FCRNGVTISVHDFVYVLSEEEDRYVAYIEDLYEDKKGSKMVKVRWFHTTDEVGAALSPDSVNPREIFLSPNLQVISVECI   80 (130)
T ss_pred             CccCCEEEECCCEEEEeCCCCCcEEEEEEEEEEcCCCCEEEEEEEecCHHHhccccCCCCCCCCeEEEcCCccccchHHe
Confidence            89999999999999999999999999999999999999999999999999999999965599999999999999999999


Q ss_pred             eccccccChHHHHHHHhhccccceeeEEEEEeeccCCCccceeecccccc
Q 044464          244 DGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSNRLKPFDLSKLHGY  293 (686)
Q Consensus       244 DG~AtVLtp~H~ek~~~~~~~~~~~~~~~C~rq~~n~~vKpFditql~GY  293 (686)
                      +|.|+|||++||+|+....++.+...+|+|+||++++++||||++|||||
T Consensus        81 ~gk~~Vls~~~y~k~~~~~~~~~~~~~f~C~~~~d~~~~~~fd~~~~~g~  130 (130)
T cd04721          81 DGLATVLTREHYEKFQSVPKNSSELQAYFCYRQIDNNKVKPFDITQLRGY  130 (130)
T ss_pred             eeeeEECCHHHHhhhhccccCccccccEEEEEEecCCCCceeeeeccccC
Confidence            99999999999999988766667899999999999999999999999999

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p Back     alignment and domain information
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO [] Back     alignment and domain information
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif) Back     alignment and domain information
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation Back     alignment and domain information
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins Back     alignment and domain information
>smart00439 BAH Bromo adjacent homology domain Back     alignment and domain information
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2 Back     alignment and domain information
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants Back     alignment and domain information
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants Back     alignment and domain information
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins Back     alignment and domain information
>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins Back     alignment and domain information
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1 Back     alignment and domain information
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p Back     alignment and domain information
>KOG1886 consensus BAH domain proteins [Transcription] Back     alignment and domain information
>smart00333 TUDOR Tudor domain Back     alignment and domain information
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins Back     alignment and domain information
>smart00333 TUDOR Tudor domain Back     alignment and domain information
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO [] Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F Back     alignment and domain information
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length Back     alignment and domain information
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane Back     alignment and domain information
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes Back     alignment and domain information
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified [] Back     alignment and domain information
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2 Back     alignment and domain information
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane Back     alignment and domain information
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids Back     alignment and domain information
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis Back     alignment and domain information
>smart00293 PWWP domain with conserved PWWP motif Back     alignment and domain information
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins Back     alignment and domain information
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins [] Back     alignment and domain information
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF Back     alignment and domain information
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA) Back     alignment and domain information
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query686
1w4s_A174 Polybromo, polybromo 1 protein; BAH, bromo-associa 2e-27
4dov_A163 ORC1, origin recognition complex subunit 1; DNA re 1e-20
3av4_A 1330 DNA (cytosine-5)-methyltransferase 1; CXXC-type zi 3e-10
3swr_A 1002 DNA (cytosine-5)-methyltransferase 1; epigenetics, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A* Length = 163 Back     alignment and structure
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* Length = 1330 Back     alignment and structure
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* Length = 1002 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query686
1w4s_A174 Polybromo, polybromo 1 protein; BAH, bromo-associa 99.85
3av4_A 1330 DNA (cytosine-5)-methyltransferase 1; CXXC-type zi 99.6
3swr_A 1002 DNA (cytosine-5)-methyltransferase 1; epigenetics, 99.59
3h8z_A128 FragIle X mental retardation syndrome-related Pro; 99.48
4dov_A163 ORC1, origin recognition complex subunit 1; DNA re 99.25
4ft4_B 784 DNA (cytosine-5)-methyltransferase 1; chromodomain 98.82
3swr_A 1002 DNA (cytosine-5)-methyltransferase 1; epigenetics, 98.36
3h8z_A128 FragIle X mental retardation syndrome-related Pro; 98.33
3av4_A 1330 DNA (cytosine-5)-methyltransferase 1; CXXC-type zi 98.05
1m4z_A238 Origin recognition complex subunit 1; DNA replicat 97.53
1mhn_A59 SurviVal motor neuron protein; SMN, SMA, spinal mu 97.5
2fl7_A232 Regulatory protein SIR3; ORC, silencing, chromatin 97.33
1g5v_A88 SurviVal motor neuron protein 1; mRNA processing, 97.04
2equ_A74 PHD finger protein 20-like 1; tudor domain, struct 97.04
3sd4_A69 PHD finger protein 20; tudor domain, transcription 96.99
3db3_A161 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 96.98
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 96.93
4a4f_A64 SurviVal of motor neuron-related-splicing factor; 96.88
2d9t_A78 Tudor domain-containing protein 3; structural geno 96.85
3s6w_A54 Tudor domain-containing protein 3; methylated argi 96.74
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 96.65
2eqm_A88 PHD finger protein 20-like 1; structural genomics, 96.5
2biv_A243 SCML2 protein, sex COMB on midleg-like protein 2; 96.33
2lcc_A76 AT-rich interactive domain-containing protein 4A; 96.32
1oz2_A331 Lethal(3)malignant brain tumor-like protein; prope 96.16
2f5k_A102 MORF-related gene 15 isoform 1; beta barrel, gene 96.08
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 96.07
3s6w_A54 Tudor domain-containing protein 3; methylated argi 96.05
2r58_A265 Polycomb protein SCM; MBT repeat, sex COMB on midl 96.04
3dlm_A213 Histone-lysine N-methyltransferase setdb1; setdb1_ 95.97
2eqk_A85 Tudor domain-containing protein 4; structural geno 95.82
2eko_A87 Histone acetyltransferase htatip; chromo domain, h 95.67
1mhn_A59 SurviVal motor neuron protein; SMN, SMA, spinal mu 95.66
3mea_A180 SAGA-associated factor 29 homolog; structural geno 95.64
3qii_A85 PHD finger protein 20; tudor domain, structural ge 95.49
4a4f_A64 SurviVal of motor neuron-related-splicing factor; 95.45
3p8d_A67 Medulloblastoma antigen MU-MB-50.72; tudor domain, 95.35
2ro0_A92 Histone acetyltransferase ESA1; HAT, chromodomain, 95.22
3qii_A85 PHD finger protein 20; tudor domain, structural ge 95.15
3p8d_A67 Medulloblastoma antigen MU-MB-50.72; tudor domain, 94.92
2ldm_A81 Uncharacterized protein; PHF20, tudor domain, epig 93.85
3ut1_A324 Lethal(3)malignant brain tumor-like protein 3; chr 94.81
2rnz_A94 Histone acetyltransferase ESA1; HAT, chromodomain, 94.74
2equ_A74 PHD finger protein 20-like 1; tudor domain, struct 94.69
1g5v_A88 SurviVal motor neuron protein 1; mRNA processing, 94.65
2diq_A110 Tudor and KH domain-containing protein; tudor doma 94.65
3mp6_A522 MBP, SGF29, maltose-binding periplasmic protein, l 94.62
1oz2_A331 Lethal(3)malignant brain tumor-like protein; prope 94.47
2d9t_A78 Tudor domain-containing protein 3; structural geno 94.44
3feo_A437 MBT domain-containing protein 1; MBTL1, structural 94.18
3f70_A456 Lethal(3)malignant brain tumor-like 2 protein; MBT 94.09
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 94.02
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 93.57
1wgs_A133 MYST histone acetyltransferase 1; tudor domain, MY 93.57
3m9q_A101 Protein MALE-specific lethal-3; chromodomain, MSL3 93.09
2ldm_A81 Uncharacterized protein; PHF20, tudor domain, epig 92.21
2lrq_A85 Protein MRG15, NUA4 complex subunit EAF3 homolog; 91.94
3feo_A437 MBT domain-containing protein 1; MBTL1, structural 92.66
2eqm_A88 PHD finger protein 20-like 1; structural genomics, 92.5
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 92.27
3dlm_A213 Histone-lysine N-methyltransferase setdb1; setdb1_ 91.71
4b9w_A201 TDRD1, tudor domain-containing protein 1; replicat 91.46
3ut1_A324 Lethal(3)malignant brain tumor-like protein 3; chr 91.25
2diq_A110 Tudor and KH domain-containing protein; tudor doma 90.93
1wjq_A107 KIAA1798 protein; MBT domain, structural genomics, 90.79
3h6z_A447 Polycomb protein SFMBT; MBT, MBR repeat, aromatic 90.74
4b9x_A226 TDRD1, tudor domain-containing protein 1; replicat 90.74
3m9p_A110 MALE-specific lethal 3 homolog; chromodomain, MSL3 90.62
2eqk_A85 Tudor domain-containing protein 4; structural geno 90.58
2lcd_A118 AT-rich interactive domain-containing protein 4A; 89.91
2l8d_A66 Lamin-B receptor; DNA binding protein; NMR {Gallus 90.45
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 90.29
1ng2_A193 Neutrophil cytosolic factor 1; P47PHOX, autoinhibi 90.24
3f70_A456 Lethal(3)malignant brain tumor-like 2 protein; MBT 89.49
2dig_A68 Lamin-B receptor; tudor domain, integral nuclear e 89.35
2bud_A92 Males-absent on the first protein; transferase, MO 89.13
3db3_A161 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 89.08
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 89.04
3sd4_A69 PHD finger protein 20; tudor domain, transcription 87.83
1ri0_A110 Hepatoma-derived growth factor; HDGF, HATH domain, 86.9
2xk0_A69 Polycomb protein PCL; transcription, aromatic CAGE 86.38
2dig_A68 Lamin-B receptor; tudor domain, integral nuclear e 85.7
3h6z_A447 Polycomb protein SFMBT; MBT, MBR repeat, aromatic 85.59
4hcz_A58 PHD finger protein 1; protein-peptide complex, tud 85.44
3llr_A154 DNA (cytosine-5)-methyltransferase 3A; DNA methylt 85.08
4fu6_A153 PC4 and SFRS1-interacting protein; structural geno 85.06
3qby_A94 Hepatoma-derived growth factor-related protein 2; 85.04
3bdl_A570 Staphylococcal nuclease domain-containing protein 84.65
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 83.95
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 82.87
1khc_A147 DNA cytosine-5 methyltransferase 3B2; five beta-sh 82.64
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 82.59
2gfu_A134 DNA mismatch repair protein MSH6; PWWP domain, tud 82.52
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* Back     alignment and structure
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* Back     alignment and structure
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N* Back     alignment and structure
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A* Back     alignment and structure
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* Back     alignment and structure
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* Back     alignment and structure
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N* Back     alignment and structure
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* Back     alignment and structure
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A Back     alignment and structure
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Back     alignment and structure
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K* Back     alignment and structure
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A Back     alignment and structure
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A* Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Back     alignment and structure
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Back     alignment and structure
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A Back     alignment and structure
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A Back     alignment and structure
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens} Back     alignment and structure
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A* Back     alignment and structure
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Back     alignment and structure
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A* Back     alignment and structure
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens} Back     alignment and structure
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Back     alignment and structure
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A Back     alignment and structure
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} Back     alignment and structure
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Back     alignment and structure
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} Back     alignment and structure
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} Back     alignment and structure
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} Back     alignment and structure
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens} Back     alignment and structure
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A Back     alignment and structure
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A* Back     alignment and structure
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A* Back     alignment and structure
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Back     alignment and structure
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens} Back     alignment and structure
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3 Back     alignment and structure
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0 Back     alignment and structure
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens} Back     alignment and structure
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster} Back     alignment and structure
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens} Back     alignment and structure
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens} Back     alignment and structure
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus} Back     alignment and structure
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3 Back     alignment and structure
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster} Back     alignment and structure
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} Back     alignment and structure
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens} Back     alignment and structure
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus} Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Back     alignment and structure
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Back     alignment and structure
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A Back     alignment and structure
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3 Back     alignment and structure
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A* Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Back     alignment and structure
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A Back     alignment and structure
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A Back     alignment and structure
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster} Back     alignment and structure
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster} Back     alignment and structure
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens} Back     alignment and structure
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0 Back     alignment and structure
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A Back     alignment and structure
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A* Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Back     alignment and structure
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 686
d1m4za_217 b.34.12.1 (A:) Origin-recognition complex protein 2e-07
>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: BAH domain
family: BAH domain
domain: Origin-recognition complex protein 120kDa subunit, Orc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 8/101 (7%), Positives = 22/101 (21%), Gaps = 5/101 (4%)

Query: 192 EDMYEDKRGQKKVKVRWFHHNQEVKGVVSLRNPHPKEVFITPHSQVISAECVDGSASVLT 251
           E        Q        +        +     +  E+++T     +        A+V+ 
Sbjct: 98  EVNPLAHYRQFNPDANILNRPLNYYNKLFSETANKNELYLTAELAELQLFNFIRVANVMD 157

Query: 252 REHFSKCLAAFPNALLARVHLCTRQF--RSNRLKPFDLSKL 290
              +        N    R             +    ++  +
Sbjct: 158 GSKWEVLK---GNVDPERDFTVRYICEPTGEKFVDINIEDV 195

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query686
d1m4za_217 Origin-recognition complex protein 120kDa subunit, 98.52
d2d9ta160 Tudor domain-containing protein 3, TDRD3 {Mouse (M 97.25
d1mhna_59 Survival motor neuron protein 1, smn {Human (Homo 96.86
d1mhna_59 Survival motor neuron protein 1, smn {Human (Homo 95.77
d2hqxa190 P100 co-activator, SND1 {Human (Homo sapiens) [Tax 95.72
d1wgsa_133 Probable histone acetyltransferase MYST1 {Mouse (M 95.18
d2d9ta160 Tudor domain-containing protein 3, TDRD3 {Mouse (M 94.99
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 93.96
d1oz2a3106 Lethal(3)malignant brain tumor-like protein {Human 93.01
d1wjqa_107 Lethal(3)malignant brain tumor-like 3 protein, L3M 92.97
d1oi1a1103 Scml2 protein {Human (Homo sapiens) [TaxId: 9606]} 92.34
d2buda188 Putative histone acetyltransferase MOF {Fruit fly 91.07
d1oi1a2104 Scml2 protein {Human (Homo sapiens) [TaxId: 9606]} 90.91
d1oz2a1110 Lethal(3)malignant brain tumor-like protein {Human 90.9
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 90.22
d2hqxa190 P100 co-activator, SND1 {Human (Homo sapiens) [Tax 90.13
d1wjsa_127 Lethal(3)malignant brain tumor-like 3 protein, L3M 89.91
d1oz2a2108 Lethal(3)malignant brain tumor-like protein {Human 89.67
d2nlua1100 Hepatoma-derived growth factor, HDGF {Human (Homo 89.16
d2f5ka183 Mortality factor 4-like protein 1, MRG15 {Human (H 86.74
d1khca_137 DNA methyltransferase DNMT3B {Mouse (Mus musculus) 84.22
d1wjra_127 Scm-like with four MBT domains protein 2, SFMBT2 ( 84.11
d1gcqc_69 Vav N-terminal SH3 domain {Mouse (Mus musculus) [T 80.89
d1h3za_108 Hypothetical protein SPBC215.07c {Fission yeast (S 80.85
d2daqa197 Histone-lysine N-methyltransferase NSD3 {Human (Ho 80.79
>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: BAH domain
family: BAH domain
domain: Origin-recognition complex protein 120kDa subunit, Orc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=2.3e-09  Score=105.05  Aligned_cols=132  Identities=9%  Similarity=0.113  Sum_probs=99.7

Q ss_pred             ccccccccCCeEEEEeeEEEEEecCCc-eeEeeehhhhcc-----------------------cCCCeeEEEEeeeccce
Q 044464          159 KHFPAFCRNGTTISIQSFVFVMAKGEN-HYVAYLEDMYED-----------------------KRGQKKVKVRWFHHNQE  214 (686)
Q Consensus       159 kHY~sF~RnG~tIsVh~FVyv~aee~~-~~vAYlEDmYED-----------------------~kg~k~V~VRWFh~~~E  214 (686)
                      ++|-.-.--|+++.+-|.|||-+++.+ ..|+-+.++=+.                       .-+++|++++||-+.+|
T Consensus        41 ~~~~~r~~D~~e~~~GD~Vlvk~~~~~~~~v~iI~ei~~~~~~~~~e~~~~~~lr~~e~~~~~~~~~~~~~~~w~~~p~e  120 (217)
T d1m4za_          41 EHYLKRSSDGIKLGRGDSVVMHNEAAGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLN  120 (217)
T ss_dssp             EEEEEETTTCCEECTTCEEEEEETTTTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHH
T ss_pred             cEEEEEecCCeEEecCCEEEEeCCCCCCceEEEEeeeccCcccchheeeeecccchhhhccchhhhhcccceeeecCchh
Confidence            344443336999999999999988755 466666664222                       22568888888888887


Q ss_pred             e-eeeecCCCCCCceEEEcCCceeeeeeeeeccccccChHHHHHHHhhccccceeeEEEEEeeccCC--Cccceeecccc
Q 044464          215 V-KGVVSLRNPHPKEVFITPHSQVISAECVDGSASVLTREHFSKCLAAFPNALLARVHLCTRQFRSN--RLKPFDLSKLH  291 (686)
Q Consensus       215 v-~~~lp~~~~~~rEvf~s~~~Q~isvECiDG~AtVLtp~H~ek~~~~~~~~~~~~~~~C~rq~~n~--~vKpFditql~  291 (686)
                      . +.... ..++++|+|+|+++-.|.+++|-|.|.||+++.|+.....   ......|+|.+.++..  +++|+||..+.
T Consensus       121 ~~~~k~r-~~~~~~ElflT~~~d~i~~~~I~~k~~V~s~~ef~~~~~~---~~~~~~F~cr~~~D~~~~~f~~id~~~~~  196 (217)
T d1m4za_         121 YYNKLFS-ETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGN---VDPERDFTVRYICEPTGEKFVDINIEDVK  196 (217)
T ss_dssp             HHHHHHH-HHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGGG---CCTTTEEEEEEECCTTSCCCEECCHHHHH
T ss_pred             hhhhccc-cccCcceeEecCccceeehhheeeeEEEecHHHhcchhhc---cCCCCeEEEEEEEcCCCCceeeccHHHhh
Confidence            4 33344 4789999999999999999999999999999999864222   2234569999999976  89999988776


Q ss_pred             ccc
Q 044464          292 GYH  294 (686)
Q Consensus       292 GY~  294 (686)
                      ...
T Consensus       197 ~~~  199 (217)
T d1m4za_         197 AYI  199 (217)
T ss_dssp             HHH
T ss_pred             hhc
Confidence            663
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oz2a3 b.34.9.3 (A:422-527) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjqa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oi1a1 b.34.9.3 (A:33-135) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2buda1 b.34.13.3 (A:367-454) Putative histone acetyltransferase MOF {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjsa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oz2a2 b.34.9.3 (A:314-421) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wjra_ b.34.9.3 (A:) Scm-like with four MBT domains protein 2, SFMBT2 (KIAA1617) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure