Citrus Sinensis ID: 044516

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQE
cccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEEcccEEEcHHHHHHHHHccccccccccccccccEEEEEccccccHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEccccccccEEEEEEEEcccccccccHHHHHHHHHHccccccccccccccccEEEEcccccEEEccccccccccccEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
cccEEEEcccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccEEEEEEEEEcccEEcHHHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHHHHHcHHHccccccccEEEEcccccHHHcccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEcccccEEEEEEEEEEEEccccccccHHHHHHHHHHHHHcccccHHHHccccEEEEcccccEEEccccccccccccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEEcccccEEEEEEccccccccHHHHHHHHHHHccccHHHHHHHHcccccccccHHHHcccccccccccccccccccHHHHHHHcc
metflftsesvneghpdklcDQISDAILDAcleqdpdskvacetctktnLVMVFGEITTKANVNYEKIVRDTCrnigfvsddvgldadncKVLVYIEqqspdiaqgvhghlskrpeeigagdqghmfgyatdetpefmplsHVLATQLGAKLTevrkngtcpwlrpdgktqVTVEYYNENGAMVPVRVHTVLIStqhdetvtndEIAADLkehvikpvipekyldektifhlnpsgrfviggphgdagltgRKIIIDtyggwgahgggafsgkdptkvdrsgaYIVRQAAKSIVASGLARRCIVQVSYaigvpeplsvfvdtyrtgkipdkeILRIVKenfdfrpgmiainldlkrggnsrflktaayghfgredpdftwevvkplkyekpqe
METFLFtsesvneghpdKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVrkngtcpwlrpdgktQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSyaigvpeplsvFVDTyrtgkipdkeilrivkenfdfrpGMIAInldlkrggnsRFLKTAAyghfgredpdftwEVVKPLKYEKPQE
METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYggwgahgggafsgKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQE
******************LCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIA********************HMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPL*******
*ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK*EK***
************EGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQE
*********SVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKP**
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METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query393 2.2.26 [Sep-21-2011]
Q96552393 S-adenosylmethionine synt N/A no 0.992 0.992 0.953 0.0
Q9SBQ7393 S-adenosylmethionine synt N/A no 1.0 1.0 0.949 0.0
Q307Y9393 S-adenosylmethionine synt N/A no 1.0 1.0 0.944 0.0
Q96551393 S-adenosylmethionine synt N/A no 0.992 0.992 0.951 0.0
Q8W3Y4392 S-adenosylmethionine synt N/A no 0.989 0.992 0.953 0.0
A9PDZ7393 S-adenosylmethionine synt yes no 1.0 1.0 0.944 0.0
P43280393 S-adenosylmethionine synt N/A no 1.0 1.0 0.941 0.0
Q9AT56393 S-adenosylmethionine synt N/A no 0.997 0.997 0.938 0.0
A7PRJ6393 S-adenosylmethionine synt yes no 1.0 1.0 0.931 0.0
A9P822392 S-adenosylmethionine synt no no 0.994 0.997 0.941 0.0
>sp|Q96552|METK2_CATRO S-adenosylmethionine synthase 2 OS=Catharanthus roseus GN=SAMS2 PE=1 SV=1 Back     alignment and function desciption
 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/390 (95%), Positives = 384/390 (98%)

Query: 1   METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTK 60
           METFLFTSESVNEGHPDKLCDQISDA+LDACL QDP+SKVACETCTKTN+VMVFGEITTK
Sbjct: 1   METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCTKTNMVMVFGEITTK 60

Query: 61  ANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGA 120
           A V+YEKIVRDTCR IGFVSDDVGLDADNCKVLV IEQQSPDIAQGVHGHL+KRPEEIGA
Sbjct: 61  AQVDYEKIVRDTCRAIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGA 120

Query: 121 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNEN 180
           GDQGHMFGYATDETPE MPLSHVLAT+LGA+LTEVRKNGTCPWLRPDGKTQVTVEYYN+N
Sbjct: 121 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNDN 180

Query: 181 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240
           GAMVP+RVHTVLISTQHDETVTNDEIAADLKEHVIKPV+PEKYLDEKTIFHLNPSGRFVI
Sbjct: 181 GAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVVPEKYLDEKTIFHLNPSGRFVI 240

Query: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLAR 300
           GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLAR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLAR 300

Query: 301 RCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNS 360
           RCIVQVSYAIGVPEPLSVFVDTY TGKIPDKEIL+IVKENFDFRPGMIAINLDLKRGGNS
Sbjct: 301 RCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGNS 360

Query: 361 RFLKTAAYGHFGREDPDFTWEVVKPLKYEK 390
           RFLKTAAYGHFGREDPDFTWEVVKPLK+EK
Sbjct: 361 RFLKTAAYGHFGREDPDFTWEVVKPLKFEK 390
Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
Catharanthus roseus (taxid: 4058)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6
>sp|Q9SBQ7|METK3_PETHY S-adenosylmethionine synthase 3 OS=Petunia hybrida GN=SAM3 PE=2 SV=1 Back     alignment and function description
>sp|Q307Y9|METK1_SOLTU S-adenosylmethionine synthase 1 OS=Solanum tuberosum GN=METK1 PE=2 SV=1 Back     alignment and function description
>sp|Q96551|METK1_CATRO S-adenosylmethionine synthase 1 OS=Catharanthus roseus GN=SAMS1 PE=1 SV=1 Back     alignment and function description
>sp|Q8W3Y4|METK_PHALU S-adenosylmethionine synthase OS=Phaseolus lunatus GN=SAMS PE=2 SV=1 Back     alignment and function description
>sp|A9PDZ7|METK2_POPTR S-adenosylmethionine synthase 2 OS=Populus trichocarpa GN=METK2 PE=2 SV=1 Back     alignment and function description
>sp|P43280|METK1_SOLLC S-adenosylmethionine synthase 1 OS=Solanum lycopersicum GN=SAM1 PE=2 SV=1 Back     alignment and function description
>sp|Q9AT56|METK1_ELAUM S-adenosylmethionine synthase 1 OS=Elaeagnus umbellata GN=SAMS1 PE=2 SV=1 Back     alignment and function description
>sp|A7PRJ6|METK4_VITVI S-adenosylmethionine synthase 4 OS=Vitis vinifera GN=METK4 PE=3 SV=1 Back     alignment and function description
>sp|A9P822|METK1_POPTR S-adenosylmethionine synthase 1 OS=Populus trichocarpa GN=METK1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
374095594394 S-adenosylmethionine synthetase [Cajanus 0.987 0.984 0.940 0.0
255543014403 s-adenosylmethionine synthetase, putativ 1.0 0.975 0.951 0.0
3024127393 RecName: Full=S-adenosylmethionine synth 0.992 0.992 0.953 0.0
75313217393 RecName: Full=S-adenosylmethionine synth 1.0 1.0 0.949 0.0
449436329393 PREDICTED: S-adenosylmethionine synthase 0.997 0.997 0.941 0.0
255548295393 s-adenosylmethionine synthetase, putativ 0.997 0.997 0.948 0.0
122211500393 RecName: Full=S-adenosylmethionine synth 1.0 1.0 0.944 0.0
449472803401 PREDICTED: S-adenosylmethionine synthase 0.997 0.977 0.938 0.0
449472806393 PREDICTED: S-adenosylmethionine synthase 0.997 0.997 0.938 0.0
3024126393 RecName: Full=S-adenosylmethionine synth 0.992 0.992 0.951 0.0
>gi|374095594|gb|AEY85025.1| S-adenosylmethionine synthetase [Cajanus cajan] Back     alignment and taxonomy information
 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/389 (94%), Positives = 378/389 (97%), Gaps = 1/389 (0%)

Query: 2   ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKA 61
           ETFLFTSESVNEGHPDKLCDQISDA+ DACLEQDPDSKVACETCTKTN+VMVFGEITTKA
Sbjct: 4   ETFLFTSESVNEGHPDKLCDQISDAVHDACLEQDPDSKVACETCTKTNMVMVFGEITTKA 63

Query: 62  NVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAG 121
           NV+YEKIVRDTCRNIGFVSDDVGLDADNCKVLV IEQQSPDIAQGVHGHL+KRPEEIGAG
Sbjct: 64  NVDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAG 123

Query: 122 DQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENG 181
           DQGHMFGYATDETPE MPLSHVLAT+LGA+LTEVRKNGTCPWLRPDGKTQVTVEYYN+ G
Sbjct: 124 DQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNDKG 183

Query: 182 AMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIG 241
           AMVP+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIG
Sbjct: 184 AMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIG 243

Query: 242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARR 301
           GPHGDAGLTGRKIIIDTYGGWGAH GGAFSGKDPTKVDRSGAYIVRQAAKSIV +GLARR
Sbjct: 244 GPHGDAGLTGRKIIIDTYGGWGAH-GGAFSGKDPTKVDRSGAYIVRQAAKSIVTNGLARR 302

Query: 302 CIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSR 361
            IVQVSYAIGVPEPLSVFVDTY TGKIPDKEIL IVKENFDFRPGMI+INLDLKRGGN R
Sbjct: 303 AIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILSIVKENFDFRPGMISINLDLKRGGNGR 362

Query: 362 FLKTAAYGHFGREDPDFTWEVVKPLKYEK 390
           FLKTAAYGHFGR+DPDFTWEVVKPLK +K
Sbjct: 363 FLKTAAYGHFGRDDPDFTWEVVKPLKGDK 391

Source: Cajanus cajan

Species: Cajanus cajan

Genus: Cajanus

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255543014|ref|XP_002512570.1| s-adenosylmethionine synthetase, putative [Ricinus communis] gi|223548531|gb|EEF50022.1| s-adenosylmethionine synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|3024127|sp|Q96552.1|METK2_CATRO RecName: Full=S-adenosylmethionine synthase 2; Short=AdoMet synthase 2; AltName: Full=Methionine adenosyltransferase 2; Short=MAT 2 gi|1655578|emb|CAA95857.1| S-adenosyl-L-methionine synthetase 2 [Catharanthus roseus] Back     alignment and taxonomy information
>gi|75313217|sp|Q9SBQ7.1|METK3_PETHY RecName: Full=S-adenosylmethionine synthase 3; Short=AdoMet synthase 3; AltName: Full=Methionine adenosyltransferase 3; Short=MAT 3 gi|5726594|gb|AAD48485.1|AF170798_1 S-adenosyl-L-methionine synthetase [Petunia x hybrida] Back     alignment and taxonomy information
>gi|449436329|ref|XP_004135945.1| PREDICTED: S-adenosylmethionine synthase 1-like [Cucumis sativus] gi|449436367|ref|XP_004135964.1| PREDICTED: S-adenosylmethionine synthase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255548295|ref|XP_002515204.1| s-adenosylmethionine synthetase, putative [Ricinus communis] gi|223545684|gb|EEF47188.1| s-adenosylmethionine synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|122211500|sp|Q307Y9.1|METK1_SOLTU RecName: Full=S-adenosylmethionine synthase 1; Short=AdoMet synthase 1; AltName: Full=Methionine adenosyltransferase 1; Short=MAT 1 gi|78191442|gb|ABB29942.1| S-adenosyl methionine synthase-like [Solanum tuberosum] Back     alignment and taxonomy information
>gi|449472803|ref|XP_004153699.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 1 [Cucumis sativus] gi|449523880|ref|XP_004168951.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 1 [Cucumis sativus] gi|449523882|ref|XP_004168952.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 2 [Cucumis sativus] gi|449523884|ref|XP_004168953.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 3 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449472806|ref|XP_004153700.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 2 [Cucumis sativus] gi|449472809|ref|XP_004153701.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 3 [Cucumis sativus] gi|449523886|ref|XP_004168954.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 4 [Cucumis sativus] gi|449523888|ref|XP_004168955.1| PREDICTED: S-adenosylmethionine synthase 1-like isoform 5 [Cucumis sativus] Back     alignment and taxonomy information
>gi|3024126|sp|Q96551.1|METK1_CATRO RecName: Full=S-adenosylmethionine synthase 1; Short=AdoMet synthase 1; AltName: Full=Methionine adenosyltransferase 1; Short=MAT 1 gi|1655576|emb|CAA95856.1| S-adenosyl-L-methionine synthetase 1 [Catharanthus roseus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
TAIR|locus:2196160393 SAM1 "S-adenosylmethionine syn 0.997 0.997 0.882 4.7e-190
TAIR|locus:2141385393 SAM-2 "S-adenosylmethionine sy 0.997 0.997 0.872 9.8e-190
TAIR|locus:2089070393 MTO3 "METHIONINE OVER-ACCUMULA 0.997 0.997 0.890 3.3e-189
TAIR|locus:2058011390 MAT3 "methionine adenosyltrans 0.984 0.992 0.863 2.2e-183
DICTYBASE|DDB_G0291179384 metK "S-adenosylmethionine syn 0.972 0.994 0.659 1.1e-133
UNIPROTKB|A7E3T7395 MAT2A "S-adenosylmethionine sy 0.964 0.959 0.619 6.3e-124
UNIPROTKB|D0G777395 MATA2 "S-adenosylmethionine sy 0.964 0.959 0.619 6.3e-124
UNIPROTKB|E2R431395 MAT2A "Uncharacterized protein 0.964 0.959 0.616 2.1e-123
UNIPROTKB|P31153395 MAT2A "S-adenosylmethionine sy 0.964 0.959 0.616 2.1e-123
MGI|MGI:2443731395 Mat2a "methionine adenosyltran 0.964 0.959 0.613 2.7e-123
TAIR|locus:2196160 SAM1 "S-adenosylmethionine synthetase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1842 (653.5 bits), Expect = 4.7e-190, P = 4.7e-190
 Identities = 346/392 (88%), Positives = 364/392 (92%)

Query:     1 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTK 60
             METFLFTSESVNEGHPDKLCDQISDA+LDACLEQDPDSKVACETCTKTN+VMVFGEITTK
Sbjct:     1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTK 60

Query:    61 ANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGA 120
             A V+YEKIVRDTCR IGFVSDDVGLDAD CKVLV IEQQSPDIAQGVHGH +K PEEIGA
Sbjct:    61 ATVDYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKCPEEIGA 120

Query:   121 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNEN 180
             GDQGHMFGYATDETPE MPLSHVLAT+LGA+LTEVRKNGTC WLRPDGKTQVTVEYYN+ 
Sbjct:   121 GDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNDK 180

Query:   181 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240
             GAMVP+RVHTVLISTQHDETVTNDEIA DLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI
Sbjct:   181 GAMVPIRVHTVLISTQHDETVTNDEIARDLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240

Query:   241 GGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLAR 300
             GGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKS+VA+G+AR
Sbjct:   241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVANGMAR 300

Query:   301 RCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNS 360
             R +VQVSYAIGVPEPLSVFVDTY TG IPDKEIL+IVKE+FDFRPGM+ INLDLKRGGN 
Sbjct:   301 RALVQVSYAIGVPEPLSVFVDTYETGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNG 360

Query:   361 RFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 392
             RFLKTAAYGHFGR+DPDFTWEVVKPLK++KPQ
Sbjct:   361 RFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQ 392
GO:0004478 "methionine adenosyltransferase activity" evidence=IEA;ISS;IDA
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006556 "S-adenosylmethionine biosynthetic process" evidence=IEA;ISS
GO:0005618 "cell wall" evidence=IDA
GO:0009693 "ethylene biosynthetic process" evidence=TAS
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0071281 "cellular response to iron ion" evidence=IEP
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006598 "polyamine catabolic process" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0007033 "vacuole organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009698 "phenylpropanoid metabolic process" evidence=RCA
GO:0009805 "coumarin biosynthetic process" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA
TAIR|locus:2141385 SAM-2 "S-adenosylmethionine synthetase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089070 MTO3 "METHIONINE OVER-ACCUMULATOR 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058011 MAT3 "methionine adenosyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291179 metK "S-adenosylmethionine synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|A7E3T7 MAT2A "S-adenosylmethionine synthase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|D0G777 MATA2 "S-adenosylmethionine synthase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R431 MAT2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P31153 MAT2A "S-adenosylmethionine synthase isoform type-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2443731 Mat2a "methionine adenosyltransferase II, alpha" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q96551METK1_CATRO2, ., 5, ., 1, ., 60.95120.99230.9923N/Ano
Q96552METK2_CATRO2, ., 5, ., 1, ., 60.95380.99230.9923N/Ano
Q9LUT2METK4_ARATH2, ., 5, ., 1, ., 60.92340.99740.9974yesno
A9PHE9METK5_POPTR2, ., 5, ., 1, ., 60.94320.98720.9822nono
A7PRJ6METK4_VITVI2, ., 5, ., 1, ., 60.93121.01.0yesno
Q8GTL5METK_CARPA2, ., 5, ., 1, ., 60.95060.97960.8974N/Ano
A7Q0V4METK5_VITVI2, ., 5, ., 1, ., 60.94350.99230.9974nono
Q4LB21METK4_HORVU2, ., 5, ., 1, ., 60.91580.99740.9898N/Ano
Q56TU3METK2_DAUCA2, ., 5, ., 1, ., 60.92340.99740.9974N/Ano
Q6SYB9METK2_TOBAC2, ., 5, ., 1, ., 60.88880.98470.9923N/Ano
A9PDZ7METK2_POPTR2, ., 5, ., 1, ., 60.94401.01.0yesno
A7NVX9METK2_VITVI2, ., 5, ., 1, ., 60.93870.99740.9974nono
A9PEK8METK3_POPTR2, ., 5, ., 1, ., 60.94840.98720.9822nono
Q9LGU6METK3_ORYSJ2, ., 5, ., 1, ., 60.90810.99740.9898nono
Q9LDQ7METK_CAMSI2, ., 5, ., 1, ., 60.94220.96940.9694N/Ano
Q84MM2METK_LITCN2, ., 5, ., 1, ., 60.92850.99740.9974N/Ano
P49611METK1_BRAJU2, ., 5, ., 1, ., 60.90300.99740.9974N/Ano
P43281METK2_SOLLC2, ., 5, ., 1, ., 60.92340.99740.9974N/Ano
P93254METK_MESCR2, ., 5, ., 1, ., 60.93120.99741.0N/Ano
A2Y053METK1_ORYSI2, ., 5, ., 1, ., 60.91320.99740.9898N/Ano
P43280METK1_SOLLC2, ., 5, ., 1, ., 60.94141.01.0N/Ano
P47916METK_POPDE2, ., 5, ., 1, ., 60.94320.98720.9822N/Ano
A4PU48METK_MEDTR2, ., 5, ., 1, ., 60.92830.99490.9923N/Ano
Q9SBQ7METK3_PETHY2, ., 5, ., 1, ., 60.94911.01.0N/Ano
Q5DNB1METK_BRARP2, ., 5, ., 1, ., 60.91320.99740.9974N/Ano
Q94FA4METK5_BRAJU2, ., 5, ., 1, ., 60.91320.99740.9974N/Ano
B0LXM0METK_WHEAT2, ., 5, ., 1, ., 60.91320.99740.9898N/Ano
A4ULF8METK_MEDFA2, ., 5, ., 1, ., 60.93520.98210.9747N/Ano
Q6F3F0METK3_ATRNU2, ., 5, ., 1, ., 60.92340.99490.9873N/Ano
Q94FA6METK3_BRAJU2, ., 5, ., 1, ., 60.90810.99740.9974N/Ano
Q8W3Y4METK_PHALU2, ., 5, ., 1, ., 60.95370.98980.9923N/Ano
Q6F3F1METK4_ATRNU2, ., 5, ., 1, ., 60.92600.99490.9873N/Ano
Q6F3F3METK2_ATRNU2, ., 5, ., 1, ., 60.92340.99490.9873N/Ano
Q9FUZ1METK2_BRAJU2, ., 5, ., 1, ., 60.93620.99740.9974N/Ano
Q944U4METK_DENCR2, ., 5, ., 1, ., 60.92580.99230.9873N/Ano
P23686METK1_ARATH2, ., 5, ., 1, ., 60.91580.99740.9974nono
Q7XZR1METK1_ATRNU2, ., 5, ., 1, ., 60.92850.99490.9873N/Ano
P93438METK2_ORYSJ2, ., 5, ., 1, ., 60.93050.98720.9847yesno
A7L2Z6METK_GOSHI2, ., 5, ., 1, ., 60.93330.99230.9923N/Ano
Q0DKY4METK1_ORYSJ2, ., 5, ., 1, ., 60.91320.99740.9898yesno
Q6GV10METK_SOLBR2, ., 5, ., 1, ., 60.93121.01.0N/Ano
A9P822METK1_POPTR2, ., 5, ., 1, ., 60.94130.99490.9974nono
Q4H1G3METK2_BETVU2, ., 5, ., 1, ., 60.92300.99230.9923N/Ano
Q4H1G4METK1_BETVU2, ., 5, ., 1, ., 60.92340.99490.9873N/Ano
P17562METK2_ARATH2, ., 5, ., 1, ., 60.90560.99740.9974nono
P24260METK2_DIACA2, ., 5, ., 1, ., 60.91810.99230.9848N/Ano
Q9AT55METK2_ELAUM2, ., 5, ., 1, ., 60.93360.99740.9974N/Ano
Q9AT56METK1_ELAUM2, ., 5, ., 1, ., 60.93870.99740.9974N/Ano
Q307Y9METK1_SOLTU2, ., 5, ., 1, ., 60.94401.01.0N/Ano
Q9FPL6METK2_SUASA2, ., 5, ., 1, ., 60.91280.99230.9873N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.60.993
3rd Layer2.5.10.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
PLN02243386 PLN02243, PLN02243, S-adenosylmethionine synthase 0.0
PTZ00104398 PTZ00104, PTZ00104, S-adenosylmethionine synthase; 0.0
PRK05250384 PRK05250, PRK05250, S-adenosylmethionine synthetas 0.0
COG0192388 COG0192, MetK, S-adenosylmethionine synthetase [Co 0.0
TIGR01034377 TIGR01034, metK, S-adenosylmethionine synthetase 0.0
PRK12459386 PRK12459, PRK12459, S-adenosylmethionine synthetas 0.0
pfam02773138 pfam02773, S-AdoMet_synt_C, S-adenosylmethionine s 2e-86
pfam02772119 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine s 2e-75
pfam00438100 pfam00438, S-AdoMet_synt_N, S-adenosylmethionine s 7e-63
>gnl|CDD|177886 PLN02243, PLN02243, S-adenosylmethionine synthase Back     alignment and domain information 
 Score =  848 bits (2193), Expect = 0.0
 Identities = 362/386 (93%), Positives = 375/386 (97%)

Query: 1   METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTK 60
           METFLFTSESVNEGHPDKLCDQISDA+LDACL QDPDSKVACETCTKTN+VMVFGEITTK
Sbjct: 1   METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60

Query: 61  ANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGA 120
           A V+YEKIVRDTCR IGFVSDDVGLDAD CKVLV IEQQSPDIAQGVHGHL+K+PEEIGA
Sbjct: 61  AKVDYEKIVRDTCREIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGA 120

Query: 121 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNEN 180
           GDQGHMFGYATDETPE MPL+HVLAT+LGA+LTEVRKNGTCPWLRPDGKTQVTVEY NE 
Sbjct: 121 GDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYKNEG 180

Query: 181 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240
           GAMVP+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI
Sbjct: 181 GAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240

Query: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLAR 300
           GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKS+VA+GLAR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLAR 300

Query: 301 RCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNS 360
           RCIVQVSYAIGVPEPLSVFVDTY TGKIPDKEIL+IVKENFDFRPGMIAINLDLKRGGN 
Sbjct: 301 RCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGNG 360

Query: 361 RFLKTAAYGHFGREDPDFTWEVVKPL 386
           RF KTAAYGHFGR+DPDFTWEVVKPL
Sbjct: 361 RFQKTAAYGHFGRDDPDFTWEVVKPL 386

Length = 386
>gnl|CDD|240268 PTZ00104, PTZ00104, S-adenosylmethionine synthase; Provisional Back     alignment and domain information
>gnl|CDD|235374 PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated Back     alignment and domain information
>gnl|CDD|223270 COG0192, MetK, S-adenosylmethionine synthetase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|233241 TIGR01034, metK, S-adenosylmethionine synthetase Back     alignment and domain information
>gnl|CDD|237106 PRK12459, PRK12459, S-adenosylmethionine synthetase; Provisional Back     alignment and domain information
>gnl|CDD|111646 pfam02773, S-AdoMet_synt_C, S-adenosylmethionine synthetase, C-terminal domain Back     alignment and domain information
>gnl|CDD|217221 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine synthetase, central domain Back     alignment and domain information
>gnl|CDD|201226 pfam00438, S-AdoMet_synt_N, S-adenosylmethionine synthetase, N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 393
COG0192388 MetK S-adenosylmethionine synthetase [Coenzyme met 100.0
PLN02243386 S-adenosylmethionine synthase 100.0
PTZ00104398 S-adenosylmethionine synthase; Provisional 100.0
PRK05250384 S-adenosylmethionine synthetase; Validated 100.0
PRK12459386 S-adenosylmethionine synthetase; Provisional 100.0
TIGR01034377 metK S-adenosylmethionine synthetase. Tandem isozy 100.0
KOG1506383 consensus S-adenosylmethionine synthetase [Coenzym 100.0
PF02773138 S-AdoMet_synt_C: S-adenosylmethionine synthetase, 100.0
PF02772120 S-AdoMet_synt_M: S-adenosylmethionine synthetase, 100.0
PF00438100 S-AdoMet_synt_N: S-adenosylmethionine synthetase, 100.0
PF01941396 AdoMet_Synthase: S-adenosylmethionine synthetase ( 98.88
PRK04439399 S-adenosylmethionine synthetase; Provisional 98.87
COG1812400 MetK Archaeal S-adenosylmethionine synthetase [Ami 97.96
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-189  Score=1381.03  Aligned_cols=380  Identities=62%  Similarity=1.002  Sum_probs=371.2

Q ss_pred             cceeeccccCCCCChhhhhhHHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEeeceeccHHHHHHHHHHhhCCCCCC
Q 044516            3 TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDD   82 (393)
Q Consensus         3 ~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~   82 (393)
                      .+|||||||+|||||||||||||||||+||+|||+|||||||+|++|+|+|+|||+|+++||++++||++|++|||++++
T Consensus         4 ~~lFTSESVseGHPDKi~DqISDaILD~~L~~Dp~srVAcEt~v~tg~v~i~GEitt~~~vd~~~~~r~~I~~IGY~~~~   83 (388)
T COG0192           4 YFLFTSESVSEGHPDKICDQISDAILDAILKQDPNSRVACETLVTTGLVVIAGEITTSAYVDIVNIARKTIKEIGYTESD   83 (388)
T ss_pred             cceeeeccccCCCChHHHHHHhHHHHHHHHhcCCCceEEEEEEEecCeEEEEEEEecCccccHHHHHHHHHHHhCCCccc
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 044516           83 VGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCP  162 (393)
Q Consensus        83 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~~  162 (393)
                      +|||+++|.|+++|++|||||+|||++..+ ..+++|||||||||||||||||+||||||+|||+|++||+++||+|.+|
T Consensus        84 ~Gfd~~t~~vl~~i~~QSpDIaqgVd~~~~-~~~~~GAGDQGimFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk~g~l~  162 (388)
T COG0192          84 YGFDAKTCAVLVAIGEQSPDIAQGVDEADE-ELDEIGAGDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKNGELP  162 (388)
T ss_pred             cCcCccceEEEeecccCChhHHHhhhhccc-chhhcCCCcceeEeeeecCCcccccChHHHHHHHHHHHHHHHHhcCCCc
Confidence            999999999999999999999999997532 3567999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEcC
Q 044516          163 WLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG  242 (393)
Q Consensus       163 ~l~pD~KsQVtv~Y~~~~~~~~p~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviGG  242 (393)
                      |||||+||||||+|++ |+  +|++|++||+||||++++++++||+.++|+||+|++|+++++++|+|+|||||||||||
T Consensus       163 ~LrpD~KsQVtv~Y~~-~~--~p~~idtIvvStQH~~~i~~~~l~~~v~e~iI~pv~~~~~l~~~tk~~INPtGrFViGG  239 (388)
T COG0192         163 WLRPDAKSQVTVEYED-NG--KPVRIDTIVVSTQHDPDISQEQLREDVIEEIIKPVLPEELLDDKTKYFINPTGRFVIGG  239 (388)
T ss_pred             ccCCCcceeEEEEEcC-CC--CceeEEEEEEEeccCcccCHHHHHHHHHHHHHhhhccHhhcCcCceEEECCCCCeeeCC
Confidence            9999999999999985 35  89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCceEEEecCCCccccccccCcCCCCCccccchhhHHHHHHHHHHhhcccceeEEEEEEEeccCceeEEEEee
Q 044516          243 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDT  322 (393)
Q Consensus       243 P~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA~~cevQlsYAIGva~Pvsi~V~t  322 (393)
                      |+||||||||||||||||||+||||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+|||
T Consensus       240 P~gD~GLTGRKIIVDTYGG~a~HGGGAFSGKDptKVDRSaAYaARyvAKNiVAAglA~~ceVQlsYAIGva~PvSi~Vdt  319 (388)
T COG0192         240 PQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSISVDT  319 (388)
T ss_pred             CCccccCccceEEEEcCCCccCCCCccCCCCCCcccchHHHHHHHHHHHHHHHhhhhhheEEEEEeEecccCceEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHHhCCCChHHHHHHhccCCCCchhhhcccccccCCCCCCCCCccccccCCcCC
Q 044516          323 YRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK  390 (393)
Q Consensus       323 fGt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~~  390 (393)
                      |||+++++++|.++|+++|||||++||+.|+|++|   ||++||+||||||++ +|||||+|+++.|+
T Consensus       320 fgT~kvse~~i~~~v~~~FdlrP~gIi~~LdL~~p---iY~~tAaYGHFGr~~-~~pWEk~dkv~~lk  383 (388)
T COG0192         320 FGTGKVSEEKIEEAVRKVFDLRPAGIIKMLDLLRP---IYRKTAAYGHFGRED-DFPWEKLDKVDELK  383 (388)
T ss_pred             cCCcccCHHHHHHHHHHhcCCCHHHHHHHhccCCc---cchhcccccccCCCC-CCCccchhhHHHHH
Confidence            99999999999999999999999999999999999   999999999999987 89999999998775

>PLN02243 S-adenosylmethionine synthase Back     alignment and domain information
>PTZ00104 S-adenosylmethionine synthase; Provisional Back     alignment and domain information
>PRK05250 S-adenosylmethionine synthetase; Validated Back     alignment and domain information
>PRK12459 S-adenosylmethionine synthetase; Provisional Back     alignment and domain information
>TIGR01034 metK S-adenosylmethionine synthetase Back     alignment and domain information
>KOG1506 consensus S-adenosylmethionine synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF02773 S-AdoMet_synt_C: S-adenosylmethionine synthetase, C-terminal domain; InterPro: IPR022630 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold Back     alignment and domain information
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold Back     alignment and domain information
>PF00438 S-AdoMet_synt_N: S-adenosylmethionine synthetase, N-terminal domain; InterPro: IPR022628 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold Back     alignment and domain information
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea Back     alignment and domain information
>PRK04439 S-adenosylmethionine synthetase; Provisional Back     alignment and domain information
>COG1812 MetK Archaeal S-adenosylmethionine synthetase [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
2p02_A396 Crystal Structure Of The Alpha Subunit Of Human S- 1e-135
2obv_A384 Crystal Structure Of The Human S-adenosylmethionine 1e-129
1qm4_A396 Methionine Adenosyltransferase Complexed With A L-M 1e-129
3so4_A415 Methionine-Adenosyltransferase From Entamoeba Histo 1e-123
1fug_A383 S-adenosylmethionine Synthetase Length = 383 1e-108
3iml_A399 Crystal Structure Of S-Adenosylmethionine Synthetas 1e-106
1xrb_A383 S-adenosylmethionine Synthetase (mat, Atp: L-methio 1e-106
3s82_A407 Structure Of A S-Adenosylmethionine Synthetase From 1e-97
3rv2_A407 Crystal Structure Of S-Adenosylmethionine Synthetas 3e-95
3tde_A408 Crystal Structure Of S-Adenosylmethionine Synthetas 1e-93
>pdb|2P02|A Chain A, Crystal Structure Of The Alpha Subunit Of Human S- Adenosylmethionine Synthetase 2 Length = 396 Back     alignment and structure 
Iteration: 1

 Score =  478 bits (1231), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/386 (61%), Positives = 288/386 (74%), Gaps = 7/386 (1%)
Query: 3   TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKAN 62
           TFLFTSESV EGHPDK+CDQISDA+LDA L+QDPD+KVACET  KT ++++ GEIT++A 
Sbjct: 18  TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAA 77
Query: 63  VNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGD 122
           V+Y+K+VR+  ++IG+     G D   C VLV +EQQSPDIAQGVH  L +  E+IGAGD
Sbjct: 78  VDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVH--LDRNEEDIGAGD 135
Query: 123 QGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGA 182
           QG MFGYATDET E MPL+ VLA +L AKL E+R+NGT PWLRPD KTQVTV+Y  + GA
Sbjct: 136 QGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGA 195
Query: 183 MVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 242
           ++P+RVHT++IS QHDE V  DE+   LKE VIK V+P KYLDE TI+HL PSGRFVIGG
Sbjct: 196 VLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGG 255
Query: 243 PHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRC 302
           P GDAGLTGRKII+DTY             KD TKVDRS AY  R  AKS+V  GL RR 
Sbjct: 256 PQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRV 315
Query: 303 IVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRF 362
           +VQVSYAIGV  PLS+ +  Y T +  ++E+L IVK+NFD RPG+I  +LDLK+     +
Sbjct: 316 LVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKK---PIY 372
Query: 363 LKTAAYGHFGREDPDFTWEVVKPLKY 388
            +TAAYGHFGR+   F WEV K LKY
Sbjct: 373 QRTAAYGHFGRD--SFPWEVPKKLKY 396
>pdb|2OBV|A Chain A, Crystal Structure Of The Human S-adenosylmethionine Synthetase 1 In Complex With The Product Length = 384 Back     alignment and structure
>pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexed With A L-Methionine Analogous Length = 396 Back     alignment and structure
>pdb|3SO4|A Chain A, Methionine-Adenosyltransferase From Entamoeba Histolytica Length = 415 Back     alignment and structure
>pdb|1FUG|A Chain A, S-adenosylmethionine Synthetase Length = 383 Back     alignment and structure
>pdb|3IML|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From Burkholderia Pseudomallei Length = 399 Back     alignment and structure
>pdb|1XRB|A Chain A, S-adenosylmethionine Synthetase (mat, Atp: L-methionine S- Adenosyltransferase, E.c.2.5.1.6) In Which Met Residues Are Replaced With Selenomethionine Residues (mse) Length = 383 Back     alignment and structure
>pdb|3S82|A Chain A, Structure Of A S-Adenosylmethionine Synthetase From Mycobacterium Avium Length = 407 Back     alignment and structure
>pdb|3RV2|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From Mycobacterium Marinum Length = 407 Back     alignment and structure
>pdb|3TDE|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase Rv1392 From Mycobacterium Tuberculosis Length = 408 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
3so4_A415 Methionine-adenosyltransferase; structural genomic 0.0
2p02_A396 S-adenosylmethionine synthetase isoform type-2; st 0.0
3iml_A399 S-adenosylmethionine synthetase; structural genomi 0.0
3s82_A407 S-adenosylmethionine synthase; seattle structural 0.0
1p7l_A383 S-adenosylmethionine synthetase; AMPPNP, SAM, tran 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica} Length = 415 Back     alignment and structure
 Score =  757 bits (1958), Expect = 0.0
 Identities = 234/387 (60%), Positives = 284/387 (73%), Gaps = 5/387 (1%)

Query: 1   METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTK 60
              F FTSESV+ GHPDK+CDQISDAILDACL QDP S VACET TKT L++V GEITT 
Sbjct: 20  GSRFFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTN 79

Query: 61  ANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGA 120
           A ++  KIVR   ++IG+   + G D   C VL  +EQQS DIA+GVH    K+ E+IGA
Sbjct: 80  AVIDIPKIVRGVVKSIGYDDTNKGFDYQTCSVLSCVEQQSQDIAKGVHV--EKKEEDIGA 137

Query: 121 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNEN 180
           GDQG MFGYATDE+ E MPL+HVL+T+L  +L E R+ G  PWLRPD K+QVT+EY    
Sbjct: 138 GDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGILPWLRPDSKSQVTLEYEEVE 197

Query: 181 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240
           G + P+RVHT++ISTQH + V+N+EIA  L+E V + VIP++ +D+K + + NPSGRFVI
Sbjct: 198 GHLKPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRFVI 257

Query: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLAR 300
           GGP GDAGLTGRKII+DTYGGWGAHGGGAFSGKD +KVDRSGAY  R  AKS+V +GL  
Sbjct: 258 GGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCH 317

Query: 301 RCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNS 360
           R +VQ+SYAIGV  PLS+ V+TY TG   +  ++ IV +NFD RPGMI   L L R    
Sbjct: 318 RVLVQLSYAIGVSHPLSINVNTYGTGICDESILVDIVNKNFDMRPGMIIKELGLTRP--- 374

Query: 361 RFLKTAAYGHFGREDPDFTWEVVKPLK 387
            F KTA  GHFGR DPDF WE  K L+
Sbjct: 375 IFQKTAVGGHFGRNDPDFKWEFPKELE 401
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A* Length = 396 Back     alignment and structure
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei} Length = 399 Back     alignment and structure
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A Length = 407 Back     alignment and structure
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A Length = 383 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
3so4_A415 Methionine-adenosyltransferase; structural genomic 100.0
3iml_A399 S-adenosylmethionine synthetase; structural genomi 100.0
3s82_A407 S-adenosylmethionine synthase; seattle structural 100.0
2p02_A396 S-adenosylmethionine synthetase isoform type-2; st 100.0
1p7l_A383 S-adenosylmethionine synthetase; AMPPNP, SAM, tran 100.0
4hpv_A407 S-adenosylmethionine synthase; structural genomics 98.38
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica} Back     alignment and structure
Probab=100.00  E-value=2.2e-192  Score=1419.19  Aligned_cols=383  Identities=61%  Similarity=1.005  Sum_probs=365.6

Q ss_pred             CcceeeccccCCCCChhhhhhHHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEeeceeccHHHHHHHHHHhhCCCCC
Q 044516            2 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSD   81 (393)
Q Consensus         2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~   81 (393)
                      .+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+++
T Consensus        21 ~~~lFTSESVseGHPDKicDqISDAILDa~L~qDp~arVAcEt~vttg~V~v~GEItt~a~vD~~~ivR~~ik~IGY~~~  100 (415)
T 3so4_A           21 SRFFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVIDIPKIVRGVVKSIGYDDT  100 (415)
T ss_dssp             -CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEG
T ss_pred             cceeEeeccccCCCChHHHhhHhHHHHHHHHhcCCCCcEEEEEEeecCeEEEEEEEecccccCHHHHHHHHHhccCCCCc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 044516           82 DVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTC  161 (393)
Q Consensus        82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~  161 (393)
                      ++|||++||.|+++|++|||||||||+.+  +..+++|||||||||||||||||+||||||+|||+|++||+++||+|.+
T Consensus       101 ~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~--~~~~~~GAGDQGiMFGYAtdET~elMPlpi~lAH~L~~rla~~Rk~g~l  178 (415)
T 3so4_A          101 NKGFDYQTCSVLSCVEQQSQDIAKGVHVE--KKEEDIGAGDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGIL  178 (415)
T ss_dssp             GGTEETTTCEEEEEEEEECCC-------------CCCCCSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             ccCccCCceEEEEecccCChhhhhccccc--cchhhcCCCcceeEEEEecCCCcccCCcHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999963  2235799999999999999999999999999999999999999999999


Q ss_pred             CccCCCCceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEc
Q 044516          162 PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIG  241 (393)
Q Consensus       162 ~~l~pD~KsQVtv~Y~~~~~~~~p~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviG  241 (393)
                      |||||||||||||+|++++|.++|+||+||||||||++++++++|+++|+|+||+||+|++|++++|+||||||||||||
T Consensus       179 ~~LrPD~KtQVTveY~~~~g~~~P~rv~tvViStQH~~~v~~~~l~~~i~e~VI~~vip~~~ld~~t~~~INPtGrFViG  258 (415)
T 3so4_A          179 PWLRPDSKSQVTLEYEEVEGHLKPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRFVIG  258 (415)
T ss_dssp             TTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHTHHHHSCTTTCCSSCEEEESTTCCCCSC
T ss_pred             CeeccCcceEEEEEEEcCCCCceeeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHhcCcccCCCCeEEEECCCCCeEEC
Confidence            99999999999999987667789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccCCceEEEecCCCccccccccCcCCCCCccccchhhHHHHHHHHHHhhcccceeEEEEEEEeccCceeEEEEe
Q 044516          242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVD  321 (393)
Q Consensus       242 GP~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA~~cevQlsYAIGva~Pvsi~V~  321 (393)
                      ||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+||
T Consensus       259 GP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~PvSi~V~  338 (415)
T 3so4_A          259 GPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCHRVLVQLSYAIGVSHPLSINVN  338 (415)
T ss_dssp             TTTTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECTTCSSCSEEEEE
T ss_pred             CCcccccccCceEEEEccCCcccCCCccccCCCccccccchhHHHHHHHHHHHHcCCcCeEEEEEEEeeccccceEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHHhCCCChHHHHHHhccCCCCchhhhcccccccCCCCCCCCCccccccCCcC
Q 044516          322 TYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYE  389 (393)
Q Consensus       322 tfGt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~  389 (393)
                      ||||+++++++|.++|+++|||||++||++|+|+||   ||++||+||||||++++||||++|+|.+-
T Consensus       339 TfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~d~l~~~  403 (415)
T 3so4_A          339 TYGTGICDESILVDIVNKNFDMRPGMIIKELGLTRP---IFQKTAVGGHFGRNDPDFKWEFPKELEIP  403 (415)
T ss_dssp             ECSCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CCTGGGSSCSSSCCCTTCTTSSCCCCCCC
T ss_pred             eCCCCcCCHHHHHHHHHHhcCCCHHHHHHHcCCCCC---cchhhcccccCCCCCCCCCCcCCcccCCC
Confidence            999999999999999999999999999999999999   99999999999999989999999999863
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei} Back     alignment and structure
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A Back     alignment and structure
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A* Back     alignment and structure
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A Back     alignment and structure
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 393
d2p02a3144 d.130.1.1 (A:274-417) S-adenosylmethionine synthet 2e-69
d1mxaa3152 d.130.1.1 (A:232-383) S-adenosylmethionine synthet 2e-66
d2p02a2126 d.130.1.1 (A:148-273) S-adenosylmethionine synthet 2e-57
d1mxaa2124 d.130.1.1 (A:108-231) S-adenosylmethionine synthet 7e-55
d2p02a1110 d.130.1.1 (A:38-147) S-adenosylmethionine syntheta 4e-52
d1mxaa1102 d.130.1.1 (A:1-102) S-adenosylmethionine synthetas 1e-46
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 144 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: S-adenosylmethionine synthetase
superfamily: S-adenosylmethionine synthetase
family: S-adenosylmethionine synthetase
domain: S-adenosylmethionine synthetase
species: Human (Homo sapiens), isoform type-2 [TaxId: 9606]

 Score =  213 bits (543), Expect = 2e-69
 Identities = 97/149 (65%), Positives = 113/149 (75%), Gaps = 5/149 (3%)

Query: 240 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLA 299
           IGGP GDAGLTGRKII+DTYGGWGAHGGGAFSGKD TKVDRS AY  R  AKS+V  GL 
Sbjct: 1   IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLC 60

Query: 300 RRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGN 359
           RR +VQVSYAIGV  PLS+ +  Y T +  ++E+L IVK+NFD RPG+I  +LDLK+   
Sbjct: 61  RRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKK--- 117

Query: 360 SRFLKTAAYGHFGREDPDFTWEVVKPLKY 388
             + +TAAYGHFGR+   F WEV K LKY
Sbjct: 118 PIYQRTAAYGHFGRD--SFPWEVPKKLKY 144
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 152 Back     information, alignment and structure
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 124 Back     information, alignment and structure
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
d2p02a3144 S-adenosylmethionine synthetase {Human (Homo sapie 100.0
d1mxaa3152 S-adenosylmethionine synthetase {Escherichia coli 100.0
d2p02a2126 S-adenosylmethionine synthetase {Human (Homo sapie 100.0
d1mxaa2124 S-adenosylmethionine synthetase {Escherichia coli 100.0
d2p02a1110 S-adenosylmethionine synthetase {Human (Homo sapie 100.0
d1mxaa1102 S-adenosylmethionine synthetase {Escherichia coli 100.0
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: S-adenosylmethionine synthetase
superfamily: S-adenosylmethionine synthetase
family: S-adenosylmethionine synthetase
domain: S-adenosylmethionine synthetase
species: Human (Homo sapiens), isoform type-2 [TaxId: 9606]

Probab=100.00  E-value=8.3e-85  Score=574.96  Aligned_cols=144  Identities=67%  Similarity=1.136  Sum_probs=141.8

Q ss_pred             EcCCCCCcccCCceEEEecCCCccccccccCcCCCCCccccchhhHHHHHHHHHHhhcccceeEEEEEEEeccCceeEEE
Q 044516          240 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVF  319 (393)
Q Consensus       240 iGGP~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA~~cevQlsYAIGva~Pvsi~  319 (393)
                      ||||+|||||||||||||||||+++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus         1 iGGp~~d~GlTGRKiivDtYGg~~~hGGGafsgKD~tKvDRSaAY~AR~iAKniVaaglA~~c~VQlsYAIGva~Pvsi~   80 (144)
T d2p02a3           1 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSIS   80 (144)
T ss_dssp             SCGGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCCSCSEEE
T ss_pred             CCCCccccCCccceEEEEcCCCccccCCcCCCCCceehhHHHHHHHHHHHHHHHHHhCCCCeeEEEEEeecCccccceEE
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCCHHHHHHHHHHhCCCChHHHHHHhccCCCCchhhhcccccccCCCCCCCCCccccccCCc
Q 044516          320 VDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKY  388 (393)
Q Consensus       320 V~tfGt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~  388 (393)
                      ||||||+++++++|.++|+++|||||++||++|+|++|   ||++||+||||||+  +||||++|++++
T Consensus        81 VdtfGT~~~~~~~i~~~I~~~FDl~P~~II~~L~L~~P---iY~~TAaYGHFGR~--~f~WEk~dkve~  144 (144)
T d2p02a3          81 IFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKP---IYQRTAAYGHFGRD--SFPWEVPKKLKY  144 (144)
T ss_dssp             EECTTCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CGGGGSSSCSSSST--TCGGGSCCCCCC
T ss_pred             EEeCCCcccCHHHHHHHHHhccCCCHHHHHHHhCCCCC---cchhccCccCCCCC--CCCeeccccccC
Confidence            99999999999999999999999999999999999999   99999999999997  599999999974
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Back     information, alignment and structure
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Back     information, alignment and structure
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure