Citrus Sinensis ID: 044541

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MFLASLTALCFVPATDDDDNSDSDEDKMDIRLVSNGKPELQAKPLSEKPIAVEPSASTAKQNKKDVKPKLKADGSDSDDSDLNTSSSDDDETSDDENPNLVNRDGSSDESSGELDESDDDEDDEGTDESESDDEDEETPKKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA
Secondary Structure (PSIPRED)
cccccEEEEEEEcccccccccccccccccHHHccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccHccccccccccccccccccccccccccccccccccHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MFLASLTAlcfvpatddddnsdsdedkmdirlvsngkpelqakplsekpiavepsastakqnkkdvkpklkadgsdsddsdlntsssdddetsddenpnlvnrdgssdessgeldesdddeddegtdesesddedeetpkkaesskkrpvesasktyvpdkkakfvtpqkteekkgvshiatphpskksaktpanndqtkqqphksggsfpckscnrsfttegglqshtkakhgapa
Flexible Loop (DISEMBL)
MFLASLTALcfvpatddddnsdsdEDKMDIRLvsngkpelqakplsekpiavepsastakqnkkdvkpklkadgsdsddsdlntsssdddetsddenpnlvnrdgssdessgeldesdddeddegtdesesddedeetpkkaesskkrpvesasktyvpdkkakfvtpqkteekkgvshiatphpskksaktpanndqtkqqphksggsfPCKSCNRSFTtegglqshtkakhgapa
Low Complexity Region (SEG)
MFLASLTALCFVPATddddnsdsdedkmdIRLVSNGKPELQAKPLSEKPIAVEPSASTAKQNKKDVKPKLKADGsdsddsdlntsssdddetsddenPNLVNRdgssdessgeldesdddeddegtdesesddedeeTPKKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA
Disordered region (IsUnstruct)
****SLTALCFV*********************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
***ASLTALCFV*************************************************************************************************************************************************************************************************************SF******************
Disordered Region (DISEMBL)
MFLASLTALCFVPATD********EDKMDIRLVSNGKPELQAKPLSEKPIAVE********************************************PNLVN********************************************************PDKKA**********************************************FPCKSCNRSFT*****************
Disordered Region (DISPRO)
MFLASLTALCFVPAT******************************************************************************************************************************************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLASLTALCFVPATDDDDNSDSDEDKMDIRLVSNGKPELQAKPLSEKPIAVEPSASTAKQNKKDVKPKLKADGSDSDDSDLNTSSSDDDETSDDENPNLVNRDGSSDESSGELDESDDDEDDEGTDESESDDEDEETPKKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANNDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q9M4U5	303	Histone deacetylase HDT2	N/A	no	0.405	0.316	0.6	3e-24
Q6V9I6	269	Histone deacetylase HDT1	N/A	no	0.367	0.323	0.591	4e-22
Q8LJS2	295	Histone deacetylase HDT1	no	no	0.801	0.644	0.426	7e-21
O24591	307	Histone deacetylase HDT1	N/A	no	0.405	0.312	0.552	7e-19
Q9LZR5	294	Histone deacetylase HDT3	yes	no	0.329	0.265	0.585	2e-18
Q56WH4	306	Histone deacetylase HDT2	no	no	0.282	0.218	0.571	6e-07
Q9FVE6	245	Histone deacetylase HDT1	no	no	0.333	0.322	0.404	1e-05

>sp|Q9M4U5|HDT2_MAIZE Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 75/100 (75%), Gaps = 4/100 (4%)

Query: 138 TPKKAESSKKRPVESASKTYVPDKKAKFVTP--QKTEEKKGVSHIATPHPSKKSAKTPAN 195
           TPKK E+ KKR  E+A KT + DKKAK  TP  QKT  KKG +H+ATPHP+K   KTPAN
Sbjct: 205 TPKKPEAGKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK--GKTPAN 262

Query: 196 NDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 235
           ND+  ++  KSGGS PCKSC+++F +E  LQ+H+KAKHGA
Sbjct: 263 NDKLTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 302

Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.
Zea mays (taxid: 4577)

>sp|Q6V9I6|HDT1_SOLCH Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1

 Score =  105 bits (261), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 69/98 (70%), Gaps = 11/98 (11%)

Query: 138 TPKKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANND 197
           TPKKAE +K+R  +SA+KT V DKKAK  TPQKT+ KKG  H+ATPHPSK+++KTP    
Sbjct: 181 TPKKAEPAKRRKADSATKTPVTDKKAKLTTPQKTDGKKGGGHVATPHPSKQASKTP---- 236

Query: 198 QTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 235
                  KS GS  CK CNRSF +EG L SH+KAKH A
Sbjct: 237 -------KSAGSHHCKPCNRSFGSEGALDSHSKAKHSA 267

Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.

Solanum chacoense (taxid: 4108)

>sp|Q8LJS2|HDT1_SOYBN Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1

 Score =  100 bits (250), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 95/223 (42%), Positives = 124/223 (55%), Gaps = 33/223 (14%)

Query: 14  ATDDDDNSDSDEDKMDIRLVSNGKPELQAKPLSEKPIAVEPSASTAKQNKKDVKPKLKAD 73
           A+D  D+S+ DE+ + +    NGKPEL+A    E     +PS S          PK+ A 
Sbjct: 104 ASDFSDSSEEDEE-LALEGQDNGKPELKA----EGAKVTKPSKSI---------PKIGAP 149

Query: 74  GSDSDDSDLNTSSSDDDETSDDENPNLVNRDGSSDESSGELDESDDDEDDEGTDESESDD 133
                       ++D  +  DD++ +  + D + ++ SG  DE DDD + E     ESD 
Sbjct: 150 ----------AKAADPKKDEDDDSDDESDDDLAGEDESGSSDEMDDDSNSE----EESDG 195

Query: 134 EDEETP-KKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKT 192
           +DEETP KK +  KKRP ESA+KT +  KKAK  TP+KT+ KK V H+ATPHPSKK  KT
Sbjct: 196 DDEETPAKKVDQGKKRPNESAAKTPISAKKAKTATPEKTDGKKSV-HVATPHPSKKGGKT 254

Query: 193 PANNDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 235
           P   + TK Q   S G   C SC +SFT E GLQ H KAKHG 
Sbjct: 255 P---NSTKGQTPNSAGQLSCASCKKSFTNEAGLQQHKKAKHGG 294

Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.

Glycine max (taxid: 3847)

>sp|O24591|HDT1_MAIZE Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 72/105 (68%), Gaps = 9/105 (8%)

Query: 138 TPKKAESSKKRPVESAS-KTYVPDKKAKFVTP--QKTEEKKGVS-HIATPHPSKKSAKTP 193
           TPKK E  KKRP ES+  KT + DKKAK  TP  QKT  KKG + H+ATPHP+K   KT 
Sbjct: 199 TPKKPEVGKKRPAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAK--GKTI 256

Query: 194 ANNDQTKQQPH---KSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 235
            NND++ + P    KSGGS PCK C++SF +E  LQ+H++AK GA
Sbjct: 257 VNNDKSVKSPKSAPKSGGSVPCKPCSKSFISETALQAHSRAKMGA 301

Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Able to deacetylate all 4 core histones.

Zea mays (taxid: 4577)

>sp|Q9LZR5|HDT3_ARATH Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 57/82 (69%), Gaps = 4/82 (4%)

Query: 160 DKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANND----QTKQQPHKSGGSFPCKSC 215
           +KKAKFVTPQKT+ KK   H+ATPHPSK++ K            +QQ  KS G+F CKSC
Sbjct: 213 NKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSC 272

Query: 216 NRSFTTEGGLQSHTKAKHGAPA 237
            R+FT+E GLQSHTKAKH A A
Sbjct: 273 TRTFTSEMGLQSHTKAKHSAAA 294

Probably mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Involved in the modulation of abscisic acid and stress-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q56WH4|HDT2_ARATH Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2

 Score = 54.3 bits (129), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 49/77 (63%), Gaps = 10/77 (12%)

Query: 138 TPKKAE-SSKKRPVESASKTYVPDKKAKFV-----TPQKTEEKKGVSHIATPHPSKKSAK 191
           TPKK E  +KKRP ES SKT V  KKAK       TPQKTEEKK   H ATPHP+KK  K
Sbjct: 199 TPKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGK 258

Query: 192 TPANNDQTKQQPHKSGG 208
           +P N +Q+     KSGG
Sbjct: 259 SPVNANQSP----KSGG 271

Probably mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVE6|HDT1_ARATH Histone deacetylase HDT1 OS=Arabidopsis thaliana GN=HDT1 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 47/99 (47%), Gaps = 20/99 (20%)

Query: 138 TPKKAESSKKRPVESASKTYVPDKKAKF-VTPQKTEEKKGVSHIATPHPSKKSAKTPANN 196
           TPKK  SSKKR  E+  K  V  KKAK  VTPQKT+EKK                     
Sbjct: 164 TPKKPASSKKRANETTPKAPVSAKKAKVAVTPQKTDEKK-------------------KG 204

Query: 197 DQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 235
            +   Q  KS     C SC ++F +   L+SH KAKH A
Sbjct: 205 GKAANQSPKSASQVSCGSCKKTFNSGNALESHNKAKHAA 243

Probably mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Required for histone H3 'Lys-9' deacetylation. Involved in rRNA gene silencing in nucleolar dominance. Seems to be implicated in the regulation of genes involved in seeds development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
225440996	307	PREDICTED: histone deacetylase HDT1-like	0.421	0.325	0.705	3e-30
297740059	149	unnamed protein product [Vitis vinifera]	0.430	0.684	0.672	1e-29
449440191	318	PREDICTED: uncharacterized protein LOC10	0.417	0.311	0.66	9e-29
255575359	287	Histone deacetylase 2a, putative [Ricinu	0.400	0.331	0.642	2e-25
118484193	305	unknown [Populus trichocarpa]	0.409	0.318	0.673	2e-25
359479465	300	PREDICTED: histone deacetylase HDT1-like	0.405	0.32	0.635	3e-25
297734854	353	unnamed protein product [Vitis vinifera]	0.405	0.271	0.635	7e-25
269969916	282	type 2 histone deacetylase c [Nicotiana	0.392	0.329	0.635	2e-23
242091631	307	hypothetical protein SORBIDRAFT_09g03095	0.434	0.335	0.542	5e-23
224069776	271	histone deacetylase [Populus trichocarpa	0.383	0.335	0.663	1e-22

>gi|225440996|ref|XP_002277422.1| PREDICTED: histone deacetylase HDT1-like [Vitis vinifera]

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/102 (70%), Positives = 82/102 (80%), Gaps = 2/102 (1%)

Query: 136 EETPKKAESSKKRPVESASKTYVPDKKAKFVTPQKT--EEKKGVSHIATPHPSKKSAKTP 193
           +ETPKKA  SKKRP ES SKT VPDKKAKFVTPQKT  ++KK   H+ATP+PSK++ KTP
Sbjct: 204 KETPKKAGPSKKRPTESVSKTPVPDKKAKFVTPQKTGDDDKKSGGHVATPYPSKQAGKTP 263

Query: 194 ANNDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 235
           AN ++ KQQ  KSGGSF CKSCNRSF +E  LQSHTKAKH A
Sbjct: 264 ANTEKPKQQVQKSGGSFSCKSCNRSFNSENALQSHTKAKHTA 305

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740059|emb|CBI30241.3| unnamed protein product [Vitis vinifera]

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/107 (67%), Positives = 83/107 (77%), Gaps = 5/107 (4%)

Query: 134 EDEETPKKAESSKKRPVESASKTYVPDKKAKFVTPQKTE-----EKKGVSHIATPHPSKK 188
           + +ETPKKA  SKKRP ES SKT VPDKKAKFVTPQKT+     +KK   H+ATP+PSK+
Sbjct: 41  KKKETPKKAGPSKKRPTESVSKTPVPDKKAKFVTPQKTDGKKSDDKKSGGHVATPYPSKQ 100

Query: 189 SAKTPANNDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 235
           + KTPAN ++ KQQ  KSGGSF CKSCNRSF +E  LQSHTKAKH A
Sbjct: 101 AGKTPANTEKPKQQVQKSGGSFSCKSCNRSFNSENALQSHTKAKHTA 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440191|ref|XP_004137868.1| PREDICTED: uncharacterized protein LOC101207572 [Cucumis sativus] gi|449500996|ref|XP_004161249.1| PREDICTED: uncharacterized protein LOC101226213 [Cucumis sativus]

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 81/100 (81%), Gaps = 1/100 (1%)

Query: 137 ETPKKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANN 196
           +TPKKAE+SKKRP++SA+KT  PDKKAK VTPQKT+ KKGV+H+ATPHPSKK+ K  A N
Sbjct: 217 QTPKKAEASKKRPLDSANKTPAPDKKAKLVTPQKTDGKKGVAHVATPHPSKKAGKMAAAN 276

Query: 197 DQTKQQ-PHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 235
           D+ KQQ P  +  +F CK+CNR+F +E  LQSHTKAKH A
Sbjct: 277 DKNKQQTPKSANAAFSCKTCNRTFGSETALQSHTKAKHTA 316

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575359|ref|XP_002528582.1| Histone deacetylase 2a, putative [Ricinus communis] gi|223531978|gb|EEF33790.1| Histone deacetylase 2a, putative [Ricinus communis]

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 72/98 (73%), Gaps = 3/98 (3%)

Query: 138 TPKKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANND 197
           TPK  E  KKRP ESA KT +PDKK K VTPQKT+ KK   H+ATPHPSKK  KTPA++D
Sbjct: 192 TPKTIEKGKKRPAESAKKTPLPDKKVKLVTPQKTDGKKASGHVATPHPSKKILKTPASSD 251

Query: 198 QTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 235
           Q K+Q  K   SFPC SCNR+F +E  LQSH+KAKH A
Sbjct: 252 QKKEQTQK---SFPCTSCNRAFGSEAALQSHSKAKHSA 286

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484193|gb|ABK93977.1| unknown [Populus trichocarpa]

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 76/101 (75%), Gaps = 4/101 (3%)

Query: 135 DEETPKKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPA 194
           D +TPKKAE  KKR  ESASK  VPDKKAKFVTPQKT+ KK   HIATPHPSK++AKT A
Sbjct: 208 DVKTPKKAEVGKKRSAESASKNPVPDKKAKFVTPQKTDLKKAGVHIATPHPSKQAAKTSA 267

Query: 195 NNDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 235
           N+ Q K+Q  K   SF C SCNRSF +E  LQSH+KAKH A
Sbjct: 268 NS-QRKEQAQK---SFSCNSCNRSFGSENALQSHSKAKHSA 304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479465|ref|XP_002270966.2| PREDICTED: histone deacetylase HDT1-like [Vitis vinifera]

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 74/96 (77%)

Query: 140 KKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANNDQT 199
           KK E  KKRP ESA+KT VP KKAK V+PQKT+ KKG +H ATPHP+KK+ KTPA+ D+ 
Sbjct: 204 KKVEPGKKRPTESATKTPVPAKKAKLVSPQKTDGKKGGAHTATPHPNKKAGKTPASGDKG 263

Query: 200 KQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 235
           K Q  KSGG   CKSC+++F +E  LQSH+KAKHGA
Sbjct: 264 KGQSPKSGGQVSCKSCSKTFNSENALQSHSKAKHGA 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734854|emb|CBI17088.3| unnamed protein product [Vitis vinifera]

 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 74/96 (77%)

Query: 140 KKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANNDQT 199
           KK E  KKRP ESA+KT VP KKAK V+PQKT+ KKG +H ATPHP+KK+ KTPA+ D+ 
Sbjct: 257 KKVEPGKKRPTESATKTPVPAKKAKLVSPQKTDGKKGGAHTATPHPNKKAGKTPASGDKG 316

Query: 200 KQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 235
           K Q  KSGG   CKSC+++F +E  LQSH+KAKHGA
Sbjct: 317 KGQSPKSGGQVSCKSCSKTFNSENALQSHSKAKHGA 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|269969916|gb|ACZ54947.1| type 2 histone deacetylase c [Nicotiana tabacum]

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 74/96 (77%), Gaps = 3/96 (3%)

Query: 138 TPKKAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANND 197
           TPKKAE SKKRP +SA KT  PDKKAKF TPQKT+ KKG  H+ATPHPSK++ KT  N  
Sbjct: 186 TPKKAEPSKKRPSDSAIKTPAPDKKAKFATPQKTDGKKGAVHVATPHPSKQAGKTSGN-- 243

Query: 198 QTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKH 233
           ++ Q P KSGGS  CK+C+R+F +E  L+SH+KAKH
Sbjct: 244 KSNQTP-KSGGSLACKTCSRTFGSETALESHSKAKH 278

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242091631|ref|XP_002441648.1| hypothetical protein SORBIDRAFT_09g030950 [Sorghum bicolor] gi|241946933|gb|EES20078.1| hypothetical protein SORBIDRAFT_09g030950 [Sorghum bicolor]

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 133 DEDEETPKKAESSKKRPVESASKTYVPDKKAKFVTP--QKTEEKKGVSHIATPHPSKKSA 190
           +E+  TPKK E+ KKR  E+A KT + DKK K  TP  QKT  KKG +H+ATP+P+K++ 
Sbjct: 202 EEETPTPKKPEAGKKRAAENALKTLLSDKKVKVATPSAQKTGGKKGATHVATPYPAKRAG 261

Query: 191 KTPANNDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 235
           KTPANND++K++  +SG S PCKSC+++F +E  LQ+H+KAKH A
Sbjct: 262 KTPANNDKSKERSPRSGRSVPCKSCSKTFNSEMALQAHSKAKHRA 306

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069776|ref|XP_002326411.1| histone deacetylase [Populus trichocarpa] gi|222833604|gb|EEE72081.1| histone deacetylase [Populus trichocarpa]

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 71/95 (74%), Gaps = 4/95 (4%)

Query: 141 KAESSKKRPVESASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANNDQTK 200
           +AE  KKR  ESASK  VPDKKAKFVTPQKT+ KK   HIATPHPSK++AKT AN+ Q K
Sbjct: 180 QAEVGKKRSAESASKNPVPDKKAKFVTPQKTDLKKAGVHIATPHPSKQAAKTSANS-QRK 238

Query: 201 QQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGA 235
           +Q  K   SF C SCNRSF +E  LQSH+KAKH A
Sbjct: 239 EQAQK---SFSCNSCNRSFGSENALQSHSKAKHSA 270

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2144623	294	HD2C "AT5G03740" [Arabidopsis	0.421	0.340	0.571	9.7e-25
TAIR|locus:2162479	306	HD2B "histone deacetylase 2B"	0.303	0.235	0.556	1.1e-15
TAIR|locus:2101655	245	HDA3 "histone deacetylase 3" [	0.219	0.212	0.528	0.00011
ZFIN|ZDB-GENE-050306-52	406	zgc:113098 "zgc:113098" [Danio	0.405	0.236	0.29	0.00029

TAIR|locus:2144623 HD2C "AT5G03740" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 60/105 (57%), Positives = 72/105 (68%)

Query:   138 TPKKAESSKKRPVE-SASKTYVPDKKAKFVTPQKTEEKKGVSHIATPHPSKKSAKTPANN 196
             TPKK E  KKR  E ++SK    +KKAKFVTPQKT+ KK   H+ATPHPSK++ K     
Sbjct:   190 TPKKPEEPKKRSAEPNSSKNPASNKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGG 249

Query:   197 D--QT--KQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA 237
                +T  +QQ  KS G+F CKSC R+FT+E GLQSHTKAKH A A
Sbjct:   250 STGETSKQQQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSAAA 294

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004407 "histone deacetylase activity" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0001510 "RNA methylation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

TAIR|locus:2162479 HD2B "histone deacetylase 2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
 Identities = 44/79 (55%), Positives = 50/79 (63%)

Query:   138 TPKKAES-SKKRPVESASKTYVPDKKAKFV-----TPQKTEEKKGVSHIATPHPSKKSAK 191
             TPKK E  +KKRP ES SKT V  KKAK       TPQKTEEKK   H ATPHP+KK  K
Sbjct:   199 TPKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGK 258

Query:   192 TPANNDQT-KQQPHKSGGS 209
             +P N +Q+ K     SGG+
Sbjct:   259 SPVNANQSPKSGGQSSGGN 277

GO:0005634 "nucleus" evidence=ISM

GO:0004407 "histone deacetylase activity" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA;TAS

GO:0005618 "cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0009294 "DNA mediated transformation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2101655 HDA3 "histone deacetylase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 0.00011, P = 0.00011
 Identities = 28/53 (52%), Positives = 30/53 (56%)

Query:   138 TPKKAESSKKRPVESASKTYVPDKKAKF-VTPQKTEEKKGVSHIATPHPSKKS 189
             TPKK  SSKKR  E+  K  V  KKAK  VTPQKT+EKK     A   P   S
Sbjct:   164 TPKKPASSKKRANETTPKAPVSAKKAKVAVTPQKTDEKKKGGKAANQSPKSAS 216

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004407 "histone deacetylase activity" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA;TAS

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0009294 "DNA mediated transformation" evidence=IMP

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-050306-52 zgc:113098 "zgc:113098" [Danio rerio (taxid:7955)]

 Score = 109 (43.4 bits), Expect = 0.00029, P = 0.00029
 Identities = 29/100 (29%), Positives = 48/100 (48%)

Query:   139 PKKAESSKKRPVESASK-TYVPDKKAKFVTPQKTEEK-KGVSHIA--TPHPSKKSAKTPA 194
             P++ E + +   E   + T + + K +   P K EE  +  SH+   T   S  S++T  
Sbjct:    24 PERTEETFRVKHEDPEQLTELIEPKEETEVPNKLEENDQYTSHLDFNTEEQSLSSSETEQ 83

Query:   195 NNDQTKQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHG 234
              + Q + Q +K   SF C+ C RSF+  G L+ H +   G
Sbjct:    84 TSSQKRAQKNKGANSFTCQECGRSFSQSGTLKVHMRIHTG 123


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.306   0.122   0.343    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      237       166   0.00097  107 3  11 23  0.37    33
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  536 (57 KB)
  Total size of DFA:  129 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.33u 0.10s 19.43t   Elapsed:  00:00:01
  Total cpu time:  19.33u 0.10s 19.43t   Elapsed:  00:00:01
  Start:  Mon May 20 16:22:41 2013   End:  Mon May 20 16:22:42 2013

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	1e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	1e-05
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	7e-05
pfam04147	809	pfam04147, Nop14, Nop14-like family	7e-05
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	1e-04
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	2e-04
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	5e-04
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	0.001
pfam13894	24	pfam13894, zf-C2H2_4, C2H2-type zinc finger	0.001
pfam02724	583	pfam02724, CDC45, CDC45-like protein	0.001
PTZ00482	844	PTZ00482, PTZ00482, membrane-attack complex/perfor	0.002
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	0.002

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 9/152 (5%)

Query: 11  FVPATDDDDNSDSDEDKMDIRLVSNGKPELQAKPLSEKPIAVEPSASTAKQNKKDVKPKL 70
                D DD ++SD  K   +  +       AK  ++K +  E  +S   + KK+   K 
Sbjct: 60  SGMVKDTDDATESDIPKKKTKTAAKAAA---AKAPAKKKLKDELDSSKKAE-KKNALDKD 115

Query: 71  KADGSDSDDSDLNTSSSDDDETSDDENPNLVNRDGSSDESSGELDESDDDEDDEGTDESE 130
                  D   LN +  DDD+  DD+       D   D+   + D+ +DD+DD+  DE E
Sbjct: 116 DDLNYVKDIDVLNQADDDDDDDDDDDL-----DDDDIDDDDDDEDDDEDDDDDDVDDEDE 170

Query: 131 SDDEDEETPKKAESSKKRPVESASKTYVPDKK 162
              E +E  K ++       E  S+     +K
Sbjct: 171 EKKEAKELEKLSDDDDFVWDEDDSEALRQARK 202

Length = 509

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 2/149 (1%)

Query: 14  ATDDDDNSDSDEDKMDIRLVSNGKPELQAKPLSEKPIAVEPSASTAKQNKKDVKPKLKAD 73
             +  D        M        + ++  K       A    A   K+ K ++    KA+
Sbjct: 48  TPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAE 107

Query: 74  GSDSDDSDLNTSSSDDDETSDDENPNLVNRDGSSDESSGELDESDDDEDDEGTDESESDD 133
             ++ D D + +   D +  +  + +  + D    +     D+ DD++DDE  D+ + DD
Sbjct: 108 KKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDD 167

Query: 134 EDEET--PKKAESSKKRPVESASKTYVPD 160
           EDEE    K+ E           +     
Sbjct: 168 EDEEKKEAKELEKLSDDDDFVWDEDDSEA 196

Length = 509

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 25/122 (20%), Positives = 39/122 (31%)

Query: 16   DDDDNSDSDEDKMDIRLVSNGKPELQAKPLSEKPIAVEPSASTAKQNKKDVKPKLKADGS 75
            D             +  V    P    +P  E     +PS+ T K+ KK ++  L A   
Sbjct: 1264 DLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKK 1323

Query: 76   DSDDSDLNTSSSDDDETSDDENPNLVNRDGSSDESSGELDESDDDEDDEGTDESESDDED 135
                                 + +  +R             S+DD+D E  D  + DDED
Sbjct: 1324 KKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDED 1383

Query: 136  EE 137
            +E
Sbjct: 1384 DE 1385

Length = 1388

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 25/101 (24%), Positives = 46/101 (45%)

Query: 73  DGSDSDDSDLNTSSSDDDETSDDENPNLVNRDGSSDESSGELDESDDDEDDEGTDESESD 132
           D     D D N      +E  ++E   + + D   D+   E +E D D  DE  DE + D
Sbjct: 303 DDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDED 362

Query: 133 DEDEETPKKAESSKKRPVESASKTYVPDKKAKFVTPQKTEE 173
            +DE+  ++ E  K++  + ++++   +    F  P+  EE
Sbjct: 363 SDDEDDEEEEEEEKEKKKKKSAESTRSELPFTFPCPKSHEE 403

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 20/142 (14%), Positives = 38/142 (26%), Gaps = 17/142 (11%)

Query: 13   PATDDDDNSDSDEDKMDIRLVSNGKPELQAKPLSEKPIAVEPSASTAKQNKKDVKPKLKA 72
               ++   S  D D+     +S       A           P  S     + +   K  +
Sbjct: 1245 SKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSS 1304

Query: 73   DGSDSDDSDLNTSSSDDDETSDDENPNLVNRDGSSDE----------------SSGELDE 116
                     L   S    +           +  S                      + D 
Sbjct: 1305 PTKKKVKKRL-EGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDS 1363

Query: 117  SDDDEDDEGTDESESDDEDEET 138
            S +D+DD   D+SE +D++++ 
Sbjct: 1364 SSEDDDDSEVDDSEDEDDEDDE 1385

Length = 1388

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 28/140 (20%), Positives = 59/140 (42%)

Query: 12  VPATDDDDNSDSDEDKMDIRLVSNGKPELQAKPLSEKPIAVEPSASTAKQNKKDVKPKLK 71
           +    +      ++    +  +S    +      S+ P     +A+ A   K   K KLK
Sbjct: 38  IKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLK 97

Query: 72  ADGSDSDDSDLNTSSSDDDETSDDENPNLVNRDGSSDESSGELDESDDDEDDEGTDESES 131
            +   S  ++   +   DD+ +  ++ +++N+    D+   + D  DDD DD+  DE + 
Sbjct: 98  DELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDD 157

Query: 132 DDEDEETPKKAESSKKRPVE 151
           +D+D++     +  KK   E
Sbjct: 158 EDDDDDDVDDEDEEKKEAKE 177

Length = 509

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 101 VNRDGSSDESSGELDESDDDEDDEGTDESESDDEDEETPKKAESSKKRPV 150
              D   DE    +   +DD+D++   + + DDE+E  P+   +S  + V
Sbjct: 220 NELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEV 269

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 12/139 (8%)

Query: 47  EKPIAVEPSASTAKQNKKDVKPKLKADGSDSDDSDLNTSSSDD------DETSDDENPNL 100
           ++ +  EP+   A                + +  D    +         DE + +    +
Sbjct: 293 DEALEREPAELAAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQV 352

Query: 101 VNRDGSSDESSGELDESDDDEDDEGTDESESDDEDEETPKKAESSKKRPVE------SAS 154
            +RDG S  +  E  E+D + +  G    ++    +   + A ++ + P          +
Sbjct: 353 ADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDET 412

Query: 155 KTYVPDKKAKFVTPQKTEE 173
           +  VP+K A    P K +E
Sbjct: 413 EPEVPEKAAPIPDPAKPDE 431

Length = 460

>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 210 FPCKSCNRSFTTEGGLQSHTKAKH 233
           F C  C +SF+++  L+ H +  H
Sbjct: 1   FKCPLCGKSFSSKDALKRHLRKHH 24

This family contains a number of divergent C2H2 type zinc fingers. Length = 24

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 78  DDSDLNTSSSDDDETSDDENPNLVNRDGSSDESSGELDESDDDEDDEGTDESESDDEDEE 137
           DD D+     D+    DD   +L   D   +ES  E +ES   EDDE  D+ + DD+D  
Sbjct: 102 DDGDIEEELQDEPRY-DDAYRDLEEDDDDDEESDEEDEESSKSEDDE-DDDDDDDDDDIA 159

Query: 138 TPKKAESSKKR 148
           T +++   ++R
Sbjct: 160 TRERSLERRRR 170

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF) Superfamily; Provisional

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 76  DSDDSDLNTSSSDDDETSDDENPNLVNRDGSSDESSGE---LDESDDDEDDEGTDESESD 132
           + D+ D   ++S +  T DD    L +RD  +D  +      D   DD  +  TD+    
Sbjct: 99  EDDEDDAGNATSGESSTDDDSLLELPDRDEDADTQANNDQTNDFDQDDSSNSQTDQGLKQ 158

Query: 133 DEDEETPKKAESSKKRPVESASKTY 157
             +  + +K    KK   E+  K Y
Sbjct: 159 SVNLSSAEKLIEEKKGQTENTFKFY 183

Length = 844

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 76   DSDDSDLNTSSSDDDETSDDENPNLVNRDGSSDESSGELDESDDDEDDEGTDESESDDED 135
              D+SD +     + E S D+  +  + D  SDESS +L E  D+ +++ +DE + +D D
Sbjct: 927  SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSE--DESENDSSDEEDGEDWD 984

Query: 136  EETPKKA---ESSKKR 148
            E   K A      K+R
Sbjct: 985  ELESKAAYDSRPGKRR 1000

Length = 1001

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
PHA00616	44	hypothetical protein	97.82
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.71
PHA02768	55	hypothetical protein; Provisional	97.69
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.6
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.59
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	97.39
smart00355	26	ZnF_C2H2 zinc finger.	97.17
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	97.12
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.96
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	96.77
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.66
PHA00732	79	hypothetical protein	96.4
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	96.32
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	96.22
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	96.21
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.27
PHA00733	128	hypothetical protein	94.8
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	94.72
PHA00733	128	hypothetical protein	94.39
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	94.27
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	94.22
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.13
KOG3576	267	consensus Ovo and related transcription factors [T	93.63
KOG3993	500	consensus Transcription factor (contains Zn finger	92.32
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	91.09
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	90.33
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	89.84
KOG3576	267	consensus Ovo and related transcription factors [T	89.6
KOG3993	500	consensus Transcription factor (contains Zn finger	87.07
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	83.98
PHA00732	79	hypothetical protein	83.79
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	83.51
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	83.14
PRK04860	160	hypothetical protein; Provisional	81.88
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	81.68

>PHA00616 hypothetical protein

Probab=97.82  E-value=3.9e-06  Score=58.62  Aligned_cols=29  Identities=17%  Similarity=0.386  Sum_probs=27.3

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ||.|..||+.|...++|..|.|.|||+.+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~   29 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNK   29 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCc
Confidence            69999999999999999999999999863

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.71  E-value=5.8e-06  Score=47.99  Aligned_cols=23  Identities=26%  Similarity=0.808  Sum_probs=21.9

Q ss_pred             ccCCcCCCCccCcccchhhhhhh
Q 044541          210 FPCKSCNRSFTTEGGLQSHTKAK  232 (237)
Q Consensus       210 y~CKsCgKtFsSesaLqsH~Rah  232 (237)
                      |.|..|++.|.....|+.|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA02768 hypothetical protein; Provisional

Probab=97.69  E-value=1.2e-05  Score=58.51  Aligned_cols=25  Identities=12%  Similarity=0.535  Sum_probs=24.3

Q ss_pred             cccCCcCCCCccCcccchhhhhhhc
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      .|.|..|||.|+..++|+.|+|+|+
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~   29 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN   29 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC
Confidence            6899999999999999999999999

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.60  E-value=1.2e-05  Score=48.34  Aligned_cols=26  Identities=23%  Similarity=0.751  Sum_probs=24.7

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhG  234 (237)
                      +|.|..|++.|.+..+|..|+|.|++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            69999999999999999999999986

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.59  E-value=1.5e-05  Score=45.09  Aligned_cols=24  Identities=33%  Similarity=0.872  Sum_probs=21.1

Q ss_pred             ccCCcCCCCccCcccchhhhhhhc
Q 044541          210 FPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       210 y~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      |.|..|++.|.+...|..|+++||
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999999987

...

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=97.39  E-value=5.5e-05  Score=69.85  Aligned_cols=29  Identities=24%  Similarity=0.520  Sum_probs=25.4

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ++.|..|||.|+..--||.|.|+|||||+
T Consensus       187 ~c~C~iCGKaFSRPWLLQGHiRTHTGEKP  215 (279)
T KOG2462|consen  187 PCECGICGKAFSRPWLLQGHIRTHTGEKP  215 (279)
T ss_pred             CcccccccccccchHHhhcccccccCCCC
Confidence            88888899999888889999999998885

>smart00355 ZnF_C2H2 zinc finger

Probab=97.17  E-value=0.00014  Score=41.14  Aligned_cols=25  Identities=20%  Similarity=0.707  Sum_probs=22.8

Q ss_pred             ccCCcCCCCccCcccchhhhhhhcC
Q 044541          210 FPCKSCNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       210 y~CKsCgKtFsSesaLqsH~RahhG  234 (237)
                      |.|..|+++|.....|+.|++.|..
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~~   25 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHXX   25 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhcc
Confidence            7899999999999999999997753

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=97.12  E-value=0.00022  Score=73.95  Aligned_cols=38  Identities=21%  Similarity=0.426  Sum_probs=33.7

Q ss_pred             CCCCCCCCCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          200 KQQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       200 K~qTPkSgGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ....++-...|.|..|.|.|++.++||+|.|.|||||+
T Consensus       344 ~~~~~~~~~khkCr~CakvfgS~SaLqiHlRSHTGERP  381 (958)
T KOG1074|consen  344 EGPSEKPFFKHKCRFCAKVFGSDSALQIHLRSHTGERP  381 (958)
T ss_pred             ccCCccccccchhhhhHhhcCchhhhhhhhhccCCCCC
Confidence            34456667899999999999999999999999999985

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.96  E-value=0.00022  Score=43.47  Aligned_cols=24  Identities=38%  Similarity=0.879  Sum_probs=21.9

Q ss_pred             cccCCcCCCCccCcccchhhhhhh
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAK  232 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~Rah  232 (237)
                      +|.|..|+|.|+++.+|.+|++.+
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccC
Confidence            589999999999999999999875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=96.77  E-value=0.00052  Score=63.52  Aligned_cols=31  Identities=19%  Similarity=0.590  Sum_probs=28.7

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..||.|.+|+|+|.-.+||..|+++|.+-|+
T Consensus       213 EKPF~C~hC~kAFADRSNLRAHmQTHS~~K~  243 (279)
T KOG2462|consen  213 EKPFSCPHCGKAFADRSNLRAHMQTHSDVKK  243 (279)
T ss_pred             CCCccCCcccchhcchHHHHHHHHhhcCCcc
Confidence            5799999999999999999999999998764

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.66  E-value=0.00031  Score=41.35  Aligned_cols=24  Identities=42%  Similarity=0.926  Sum_probs=22.3

Q ss_pred             ccCCcCCCCccCcccchhhhhhhc
Q 044541          210 FPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       210 y~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      |.|..|++.|++..+|++|.+.|.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~   24 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKK   24 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCC
Confidence            789999999999999999999874

>PHA00732 hypothetical protein

Probab=96.40  E-value=0.0012  Score=50.22  Aligned_cols=26  Identities=23%  Similarity=0.352  Sum_probs=23.0

Q ss_pred             cccCCcCCCCccCcccchhhhhh-hcC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKA-KHG  234 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~Ra-hhG  234 (237)
                      ||.|..|++.|.+..+|+.|+++ |++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~   27 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL   27 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC
Confidence            68999999999999999999996 554

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=96.32  E-value=0.0011  Score=68.66  Aligned_cols=31  Identities=23%  Similarity=0.548  Sum_probs=29.4

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+-|.|+.|||+|...-.|+.|.|||.|||+
T Consensus       279 lRKFKCtECgKAFKfKHHLKEHlRIHSGEKP  309 (1007)
T KOG3623|consen  279 LRKFKCTECGKAFKFKHHLKEHLRIHSGEKP  309 (1007)
T ss_pred             hccccccccchhhhhHHHHHhhheeecCCCC
Confidence            4789999999999999999999999999985

>smart00451 ZnF_U1 U1-like zinc finger

Probab=96.22  E-value=0.0017  Score=40.55  Aligned_cols=27  Identities=44%  Similarity=0.778  Sum_probs=23.8

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhc
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      .|+|.|..|++.|.+..+|..|.+.+.
T Consensus         1 ~~~~~C~~C~~~~~~~~~~~~H~~gk~   27 (35)
T smart00451        1 TGGFYCKLCNVTFTDEISVEAHLKGKK   27 (35)
T ss_pred             CcCeEccccCCccCCHHHHHHHHChHH
Confidence            378999999999999999999988653

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=96.21  E-value=0.0015  Score=68.00  Aligned_cols=30  Identities=20%  Similarity=0.627  Sum_probs=27.7

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .-+.|+.|||.|++.++|+.|+|+|+|+|+
T Consensus       878 n~h~C~vCgk~FsSSsALqiH~rTHtg~KP  907 (958)
T KOG1074|consen  878 NAHVCNVCGKQFSSSAALEIHMRTHTGPKP  907 (958)
T ss_pred             chhhhccchhcccchHHHHHhhhcCCCCCC
Confidence            468899999999999999999999999974

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.27  E-value=0.0064  Score=44.50  Aligned_cols=33  Identities=18%  Similarity=0.336  Sum_probs=24.7

Q ss_pred             CCCCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          205 KSGGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       205 kSgGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .|--|..|+.|+..|.+.-+|.+|..++|+.++
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            355699999999999999999999999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PHA00733 hypothetical protein

Probab=94.80  E-value=0.012  Score=47.92  Aligned_cols=27  Identities=26%  Similarity=0.471  Sum_probs=20.1

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhG  234 (237)
                      .+|.|..|++.|....+|..|++.+|+
T Consensus        98 ~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         98 HSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             cCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            467777777777777777777777775

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=94.72  E-value=0.008  Score=35.32  Aligned_cols=24  Identities=29%  Similarity=0.652  Sum_probs=19.3

Q ss_pred             ccCCcCCCCccCcccchhhhhhhcC
Q 044541          210 FPCKSCNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       210 y~CKsCgKtFsSesaLqsH~RahhG  234 (237)
                      |.|..|+=+.+ ...|..|.+.||+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            78999996666 8899999999986

>PHA00733 hypothetical protein

Probab=94.39  E-value=0.018  Score=47.07  Aligned_cols=27  Identities=19%  Similarity=0.448  Sum_probs=24.7

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhc
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      ..||.|..|++.|.+..+|.+|+++|+
T Consensus        71 ~kPy~C~~Cgk~Fss~s~L~~H~r~h~   97 (128)
T PHA00733         71 VSPYVCPLCLMPFSSSVSLKQHIRYTE   97 (128)
T ss_pred             CCCccCCCCCCcCCCHHHHHHHHhcCC
Confidence            579999999999999999999999763

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=94.27  E-value=0.017  Score=41.74  Aligned_cols=27  Identities=41%  Similarity=0.843  Sum_probs=23.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhG  234 (237)
                      ..|.|..|++.|.+..+|+.|++.|+.
T Consensus        49 ~~~~C~~C~~~f~s~~~l~~Hm~~~~H   75 (100)
T PF12756_consen   49 ESFRCPYCNKTFRSREALQEHMRSKHH   75 (100)
T ss_dssp             SSEEBSSSS-EESSHHHHHHHHHHTTT
T ss_pred             CCCCCCccCCCCcCHHHHHHHHcCccC
Confidence            369999999999999999999998643

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=94.22  E-value=0.015  Score=60.56  Aligned_cols=31  Identities=19%  Similarity=0.546  Sum_probs=24.9

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+||.|-.|.|+|.+.-.|+.|.|-|.|||+
T Consensus       920 qRPyqC~iCkKAFKHKHHLtEHkRLHSGEKP  950 (1007)
T KOG3623|consen  920 QRPYQCIICKKAFKHKHHLTEHKRLHSGEKP  950 (1007)
T ss_pred             CCCcccchhhHhhhhhhhhhhhhhhccCCCc
Confidence            3788888888888888888888888888874

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.13  E-value=0.017  Score=35.43  Aligned_cols=21  Identities=38%  Similarity=0.852  Sum_probs=18.1

Q ss_pred             ccCCcCCCCccCcccchhhhhh
Q 044541          210 FPCKSCNRSFTTEGGLQSHTKA  231 (237)
Q Consensus       210 y~CKsCgKtFsSesaLqsH~Ra  231 (237)
                      ..|..|||.| ....|..|+++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4799999999 77889999875

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=93.63  E-value=0.022  Score=52.15  Aligned_cols=30  Identities=23%  Similarity=0.511  Sum_probs=23.1

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .-|.|..|||.|+---.|.+|.|+|||-|+
T Consensus       144 kr~lct~cgkgfndtfdlkrh~rthtgvrp  173 (267)
T KOG3576|consen  144 KRHLCTFCGKGFNDTFDLKRHTRTHTGVRP  173 (267)
T ss_pred             HHHHHhhccCcccchhhhhhhhccccCccc
Confidence            456777777878877888888888888764

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=92.32  E-value=0.053  Score=53.58  Aligned_cols=26  Identities=23%  Similarity=0.639  Sum_probs=23.8

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhG  234 (237)
                      -|.|..|+|.|+...||-+|.|-|.-
T Consensus       295 EYrCPEC~KVFsCPANLASHRRWHKP  320 (500)
T KOG3993|consen  295 EYRCPECDKVFSCPANLASHRRWHKP  320 (500)
T ss_pred             eecCCcccccccCchhhhhhhcccCC
Confidence            58899999999999999999999864

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=91.09  E-value=0.067  Score=32.62  Aligned_cols=14  Identities=29%  Similarity=0.918  Sum_probs=12.3

Q ss_pred             CcccCCcCCCCccC
Q 044541          208 GSFPCKSCNRSFTT  221 (237)
Q Consensus       208 Gpy~CKsCgKtFsS  221 (237)
                      .||.|..|+++|.+
T Consensus        13 k~~~C~~C~k~F~~   26 (26)
T PF13465_consen   13 KPYKCPYCGKSFSN   26 (26)
T ss_dssp             SSEEESSSSEEESS
T ss_pred             CCCCCCCCcCeeCc
Confidence            58999999999964

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=90.33  E-value=0.11  Score=31.67  Aligned_cols=14  Identities=21%  Similarity=0.501  Sum_probs=12.5

Q ss_pred             cchhhhhhhcCCCC
Q 044541          224 GLQSHTKAKHGAPA  237 (237)
Q Consensus       224 aLqsH~RahhGek~  237 (237)
                      +|+.|+|+|+|+++
T Consensus         1 ~l~~H~~~H~~~k~   14 (26)
T PF13465_consen    1 NLRRHMRTHTGEKP   14 (26)
T ss_dssp             HHHHHHHHHSSSSS
T ss_pred             CHHHHhhhcCCCCC
Confidence            58999999999985

...

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=89.84  E-value=0.083  Score=44.51  Aligned_cols=27  Identities=41%  Similarity=0.771  Sum_probs=25.3

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhc
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      +|+|-|-.|-|.|....+|+-|.|++-
T Consensus        55 ~GqfyCi~CaRyFi~~~~l~~H~ktK~   81 (129)
T KOG3408|consen   55 GGQFYCIECARYFIDAKALKTHFKTKV   81 (129)
T ss_pred             CceeehhhhhhhhcchHHHHHHHhccH
Confidence            699999999999999999999999864

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=89.60  E-value=0.09  Score=48.24  Aligned_cols=29  Identities=34%  Similarity=0.701  Sum_probs=26.8

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      .+||.|..|+|+|.+...|.+|.+.=||-
T Consensus       171 vrpykc~~c~kaftqrcsleshl~kvhgv  199 (267)
T KOG3576|consen  171 VRPYKCSLCEKAFTQRCSLESHLKKVHGV  199 (267)
T ss_pred             ccccchhhhhHHHHhhccHHHHHHHHcCc
Confidence            58999999999999999999999988874

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=87.07  E-value=0.14  Score=50.71  Aligned_cols=30  Identities=30%  Similarity=0.680  Sum_probs=27.2

Q ss_pred             CCCcccCCcCCCCccCcccchhhhhhhcCC
Q 044541          206 SGGSFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       206 SgGpy~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      +.|-|.|.+|+|.|....-|..|+-+||-.
T Consensus       353 s~gi~~C~~C~KkFrRqAYLrKHqlthq~~  382 (500)
T KOG3993|consen  353 SSGIFSCHTCGKKFRRQAYLRKHQLTHQRA  382 (500)
T ss_pred             cCceeecHHhhhhhHHHHHHHHhHHhhhcc
Confidence            468999999999999999999999999853

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.98  E-value=0.27  Score=32.38  Aligned_cols=26  Identities=31%  Similarity=0.574  Sum_probs=17.2

Q ss_pred             CcccCCcCCCCccCc----ccchhhhhhhc
Q 044541          208 GSFPCKSCNRSFTTE----GGLQSHTKAKH  233 (237)
Q Consensus       208 Gpy~CKsCgKtFsSe----saLqsH~Rahh  233 (237)
                      ....|+.|++.|...    ++|..|.+.+|
T Consensus        15 ~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h   44 (45)
T PF02892_consen   15 KKAKCKYCGKVIKYSSGGTSNLKRHLKKKH   44 (45)
T ss_dssp             S-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred             CeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence            578999999987765    78899986554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>PHA00732 hypothetical protein

Probab=83.79  E-value=0.46  Score=36.26  Aligned_cols=22  Identities=27%  Similarity=0.547  Sum_probs=18.8

Q ss_pred             cccCCcCCCCccCcccchhhhhhhc
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      +|.|..|+++|.   .|..|.++|-
T Consensus        27 ~~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732         27 LTKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CCccCCCCCEeC---ChhhhhcccC
Confidence            468999999997   6999998764

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=83.51  E-value=0.41  Score=40.10  Aligned_cols=26  Identities=27%  Similarity=0.634  Sum_probs=17.8

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      ....+|=.|||.|   ..|.+|.+.|||=
T Consensus        70 ~d~i~clecGk~~---k~LkrHL~~~~gl   95 (132)
T PF05443_consen   70 PDYIICLECGKKF---KTLKRHLRTHHGL   95 (132)
T ss_dssp             SS-EE-TBT--EE---SBHHHHHHHTT-S
T ss_pred             cCeeEEccCCccc---chHHHHHHHccCC
Confidence            4578999999999   5679999999984

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=83.14  E-value=0.65  Score=32.26  Aligned_cols=24  Identities=25%  Similarity=0.534  Sum_probs=15.4

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhG  234 (237)
                      .|.|+.|...|.  .+|+.|.+.+|+
T Consensus        31 ~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen   31 NVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CccCCCchhhhh--hHHHHHHHHhcC
Confidence            466777766544  377777776664

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PRK04860 hypothetical protein; Provisional

Probab=81.88  E-value=0.67  Score=39.58  Aligned_cols=26  Identities=19%  Similarity=0.525  Sum_probs=22.5

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      =+|.|. |++   ....+..|+|+|+|+++
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~  143 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAV  143 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCcc
Confidence            379998 997   77889999999999863

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=81.68  E-value=0.65  Score=32.26  Aligned_cols=26  Identities=35%  Similarity=0.802  Sum_probs=21.4

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      .|.|+.|++.|+ ..+|..|....|..
T Consensus         2 ~f~CP~C~~~~~-~~~L~~H~~~~H~~   27 (54)
T PF05605_consen    2 SFTCPYCGKGFS-ESSLVEHCEDEHRS   27 (54)
T ss_pred             CcCCCCCCCccC-HHHHHHHHHhHCcC
Confidence            599999999766 57899998887754

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	2e-07
3iyl_X	1214	VP3; non-enveloped virus, membrane penetration pro	8e-05

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V Length = 1275

 Score = 50.2 bits (119), Expect = 2e-07
 Identities = 23/180 (12%), Positives = 56/180 (31%), Gaps = 14/180 (7%)

Query: 62  NKKDVKPKLKADGSDSDDSDLNTSSSDDDETSDDENPNLVNRDGSSDESSGELDESDDD- 120
            + D       D  ++      T     +       P + +   +++ +   +  +D+  
Sbjct: 21  ERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGT 80

Query: 121 -------EDDEGTDESESDDEDEETPKKAESSKKRPVESASKTYVPDKKAKFVTPQKTEE 173
                    D   + SE+ DE +E  +K      +     + +      A  ++     +
Sbjct: 81  PDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVD 140

Query: 174 KKGVSHIATPHPSKKSAKTPANNDQTKQQP-----HKSGGSFPCKSCNRSFTTEGGLQSH 228
            +G      P  ++ +  T A   +   +        SG  + C  C+    +   L +H
Sbjct: 141 NEG-GSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAH 199

>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_C 3k1q_B Length = 1214

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 7/139 (5%)

Query: 103 RDGSSDESSGELDESDDDEDDEGTDESESDDEDEETPKKAESSKKRPVESASKTYVPDKK 162
           R  +    S     +D +        + +      +P +A +   +       +      
Sbjct: 3   RRSARKAQSAIASPADTNVVPAKDAPTTNSPPSTTSPNQAAADANQQQAGIVSSQSGPNA 62

Query: 163 AKFVTPQKTEEKKGVSH---IATPHPSKKSAKTPANNDQTKQQ----PHKSGGSFPCKSC 215
                P  +    G       +    +  +A  PA      Q     P  +  S+ C  C
Sbjct: 63  VGDSAPSSSVNNDGDIITRPTSDSIAAVANATKPAAVVSDPQSMKVTPIVNPSSYVCNVC 122

Query: 216 NRSFTTEGGLQSHTKAKHG 234
           N  F+T   L  H ++ H 
Sbjct: 123 NARFSTMSALSEHLRSDHR 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.71
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.66
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.65
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.62
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.62
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.61
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.6
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.59
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.01
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.01
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.57
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.57
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.55
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.55
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.54
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.54
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	98.53
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.53
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.51
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.51
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.46
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.42
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.4
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.39
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.39
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.37
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.37
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.37
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	98.37
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.37
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.36
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.36
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.35
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.35
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.35
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.35
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.34
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.34
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.34
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.34
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.34
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.34
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.33
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.33
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.33
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.33
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.33
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.33
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.32
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.32
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.32
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.32
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.32
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.31
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.31
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.31
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.31
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.3
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.3
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.3
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.3
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.3
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.3
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.3
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.29
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.29
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.29
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.29
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.29
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.29
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.29
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.28
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.28
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.28
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.28
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.61
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.27
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.27
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.27
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.27
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.27
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.27
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.27
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.27
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.26
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.26
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.26
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.26
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.26
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.26
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.25
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.25
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.25
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.25
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.25
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.25
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.25
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.25
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.25
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.25
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.24
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.24
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.24
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.24
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.24
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.24
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.24
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.24
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.24
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.24
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.23
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.23
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.23
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.23
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.23
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.23
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.23
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.23
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.22
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.22
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.22
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.22
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.22
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.22
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.21
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.21
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.21
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.19
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.18
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.17
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.16
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.16
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.15
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.15
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.14
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.14
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	98.12
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.1
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.05
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.03
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.03
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	97.99
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	97.98
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	97.98
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	97.96
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	97.96
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	97.95
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	97.9
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	97.88
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	97.83
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	97.81
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	97.8
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	97.8
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	97.79
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	97.73
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	97.73
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	97.72
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	97.7
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	97.69
2epa_A	72	Krueppel-like factor 10; transforming growth facto	97.68
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	97.67
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	97.66
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	97.66
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	97.66
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	97.65
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	97.62
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	97.6
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.58
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	97.55
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	97.54
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	97.53
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	97.52
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	97.5
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	97.5
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	97.5
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	97.5
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	97.49
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	97.47
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	97.46
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	97.46
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	97.46
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	97.44
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	97.43
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	97.41
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	97.39
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	97.39
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	97.39
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	97.39
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	97.35
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	97.35
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	97.32
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	97.31
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	97.29
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	97.28
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	97.27
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	97.23
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	97.2
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	97.19
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	97.19
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	97.18
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	97.18
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	97.18
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	97.14
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	97.09
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	97.09
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	97.07
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	97.02
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	96.98
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.94
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	96.94
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	96.93
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	96.92
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	96.91
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	96.88
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	96.81
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	96.78
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	96.71
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	96.7
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	96.69
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	96.59
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	96.54
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	96.53
2epa_A	72	Krueppel-like factor 10; transforming growth facto	96.49
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	96.43
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.14
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	95.05
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	93.5
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	92.92
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	91.8
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	91.5
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	90.18
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	89.46
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	88.43
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	87.49
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	87.08
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	87.05
1ej6_B	1275	Lambda1; icosahedral, non-equivalence, dsRNA virus	85.56
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	84.28
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	83.46

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.71  E-value=2.1e-09  Score=59.74  Aligned_cols=29  Identities=34%  Similarity=0.863  Sum_probs=27.6

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      ++|.|..|+++|.....|..|+++|+|++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            58999999999999999999999999986

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.66  E-value=7.6e-09  Score=57.23  Aligned_cols=29  Identities=24%  Similarity=0.563  Sum_probs=27.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .||.|..|+++|...+.|..|+++|+|++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            37999999999999999999999999985

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.65  E-value=9.6e-09  Score=57.22  Aligned_cols=29  Identities=24%  Similarity=0.573  Sum_probs=27.6

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      +|.|..|++.|...+.|..|+++|+++++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            79999999999999999999999999874

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.62  E-value=1.1e-08  Score=60.71  Aligned_cols=30  Identities=20%  Similarity=0.391  Sum_probs=28.1

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .||.|..|++.|...+.|..|+++|+|+++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~   30 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGE   30 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            379999999999999999999999999874

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.62  E-value=9.6e-09  Score=57.43  Aligned_cols=28  Identities=21%  Similarity=0.490  Sum_probs=26.9

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      ||.|..|++.|...+.|..|+++|+|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            7999999999999999999999999985

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.61  E-value=5.4e-09  Score=61.43  Aligned_cols=29  Identities=28%  Similarity=0.572  Sum_probs=27.7

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ||.|..|+++|...+.|..|+++|+|+++
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp   30 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVA   30 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCC
Confidence            79999999999999999999999999874

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.60  E-value=1.1e-08  Score=56.91  Aligned_cols=28  Identities=29%  Similarity=0.680  Sum_probs=26.9

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      +|.|..|++.|...+.|..|+++|+|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            7999999999999999999999999985

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.59  E-value=8.8e-09  Score=57.38  Aligned_cols=29  Identities=21%  Similarity=0.491  Sum_probs=27.5

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..|+++|.....|..|+++|+|++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            48999999999999999999999999985

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.01  E-value=5.6e-09  Score=58.81  Aligned_cols=28  Identities=25%  Similarity=0.617  Sum_probs=26.9

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      ||.|..|+++|...++|..|+++|+|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            7999999999999999999999999985

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.01  E-value=5.8e-09  Score=58.53  Aligned_cols=29  Identities=31%  Similarity=0.733  Sum_probs=27.4

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..|++.|...++|+.|+++|+|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            48999999999999999999999999975

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.57  E-value=1.5e-08  Score=55.94  Aligned_cols=27  Identities=26%  Similarity=0.685  Sum_probs=24.5

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      ||.|..|+++|.....|..|+++|+|+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            699999999999999999999999985

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.57  E-value=1.3e-08  Score=59.33  Aligned_cols=30  Identities=30%  Similarity=0.631  Sum_probs=28.4

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|+.|+++|+|+++
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            589999999999999999999999999874

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=1.9e-08  Score=59.51  Aligned_cols=30  Identities=30%  Similarity=0.647  Sum_probs=28.1

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      ..+|.|..|++.|.....|+.|+|+|++++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            368999999999999999999999999985

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.55  E-value=2e-08  Score=57.60  Aligned_cols=29  Identities=31%  Similarity=0.679  Sum_probs=27.1

Q ss_pred             CcccCC--cCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCK--SCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CK--sCgKtFsSesaLqsH~RahhGek  236 (237)
                      .||.|.  .|+++|...+.|+.|+++|+|++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            389998  99999999999999999999985

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.54  E-value=3.1e-08  Score=56.98  Aligned_cols=29  Identities=21%  Similarity=0.626  Sum_probs=27.4

Q ss_pred             CcccCC--cCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCK--SCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CK--sCgKtFsSesaLqsH~RahhGek  236 (237)
                      .||.|.  .|+++|...+.|..|+++|+|++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            489999  89999999999999999999986

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=2.1e-08  Score=58.92  Aligned_cols=29  Identities=24%  Similarity=0.552  Sum_probs=27.7

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..|++.|.....|+.|+++|+|++
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            58999999999999999999999999986

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=98.53  E-value=1.7e-08  Score=70.15  Aligned_cols=29  Identities=21%  Similarity=0.578  Sum_probs=17.7

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .||.|..||++|...+.|..|+|+|+|++
T Consensus        31 kp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C           31 RPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             cCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            45666666666666666666666666654

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.53  E-value=2.2e-08  Score=58.72  Aligned_cols=30  Identities=27%  Similarity=0.516  Sum_probs=28.4

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=2.1e-08  Score=58.95  Aligned_cols=30  Identities=20%  Similarity=0.551  Sum_probs=28.0

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      ..+|.|..|++.|.....|..|+++|+|++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            7 GKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            358999999999999999999999999985

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.51  E-value=3.4e-08  Score=55.53  Aligned_cols=28  Identities=36%  Similarity=0.667  Sum_probs=26.7

Q ss_pred             cccCCcCCCCccCcccchhh-hhhhcCCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSH-TKAKHGAP  236 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH-~RahhGek  236 (237)
                      +|.|..|++.|...+.|..| +++|+|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            79999999999999999999 89999985

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=1.9e-08  Score=59.65  Aligned_cols=31  Identities=32%  Similarity=0.714  Sum_probs=28.8

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|..|++.|....+|..|+++|+|+++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            7 GRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            3589999999999999999999999999874

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=2.6e-08  Score=58.92  Aligned_cols=29  Identities=21%  Similarity=0.324  Sum_probs=27.6

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..|++.|...+.|..|+++|++++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999999999985

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.46  E-value=3.5e-08  Score=59.68  Aligned_cols=30  Identities=27%  Similarity=0.571  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   34 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMNVHRRDRA   34 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             CceECCCCCcccCCHHHHHHHHHHcCCCcc
Confidence            589999999999999999999999999874

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=3.6e-08  Score=58.28  Aligned_cols=30  Identities=20%  Similarity=0.506  Sum_probs=28.0

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      ..+|.|..|++.|.....|..|+++|++++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            7 GKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             CCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            358999999999999999999999999985

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.42  E-value=4e-08  Score=54.81  Aligned_cols=27  Identities=19%  Similarity=0.688  Sum_probs=25.7

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhG  234 (237)
                      .+|.|..|++.|...+.|..|+++|+|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            489999999999999999999999986

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=5e-08  Score=57.97  Aligned_cols=29  Identities=28%  Similarity=0.512  Sum_probs=27.5

Q ss_pred             CcccCCcCCCCccCc-ccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTE-GGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSe-saLqsH~RahhGek  236 (237)
                      .+|.|..|++.|... +.|..|+++|+|++
T Consensus         8 k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            8 RAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            589999999999999 99999999999985

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=9.9e-08  Score=57.90  Aligned_cols=30  Identities=23%  Similarity=0.712  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|+++|...+.|..|+++|+|+++
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2ytb_A           10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP   39 (42)
T ss_dssp             CSBCCTTTTCCBSSHHHHHTTGGGTSCCSC
T ss_pred             CCeeCCCccchhCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.39  E-value=9.4e-08  Score=56.57  Aligned_cols=28  Identities=32%  Similarity=0.600  Sum_probs=26.7

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      .+|.|..|++.|.....|..|+++|+|+
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            5899999999999999999999999986

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=1.7e-07  Score=58.56  Aligned_cols=31  Identities=16%  Similarity=0.459  Sum_probs=28.7

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|..|++.|.....|+.|+++|+++++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2eom_A           10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP   40 (46)
T ss_dssp             CSSCCCSSSCCCCSSHHHHHHHHHHHSSCCC
T ss_pred             CCCcCCCCCCCeeCChHHHHHHHHHhCCCCC
Confidence            3589999999999999999999999999874

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=1.1e-07  Score=58.09  Aligned_cols=30  Identities=27%  Similarity=0.634  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|+++|...+.|..|+++|+|+++
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP   39 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTTTTSCCSS
T ss_pred             CCEECCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            589999999999999999999999999874

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.37  E-value=1.3e-07  Score=58.72  Aligned_cols=32  Identities=22%  Similarity=0.567  Sum_probs=29.2

Q ss_pred             CCCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          206 SGGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       206 SgGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ...+|.|..|++.|.....|+.|+++|+++++
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ep0_A            9 GEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP   40 (46)
T ss_dssp             TCCSEECSSSCCEESSHHHHHHHHTTTSSSCC
T ss_pred             CCCCeeCcccCcccCChHHHHHHHHHhCCCCC
Confidence            34689999999999999999999999999874

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=8.6e-08  Score=58.27  Aligned_cols=30  Identities=27%  Similarity=0.711  Sum_probs=28.4

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   38 (41)
T 2ept_A            9 RVYECQECGKSFRQKGSLTLHERIHTGSGP   38 (41)
T ss_dssp             CCEECSSSCCEESSHHHHHHHGGGCCCCSC
T ss_pred             CCeECCCCCCCcCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=98.37  E-value=7.4e-08  Score=66.89  Aligned_cols=32  Identities=28%  Similarity=0.614  Sum_probs=29.7

Q ss_pred             CCCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          206 SGGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       206 SgGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      |..||.|..|||+|...+.|+.|+|+|+|+++
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp   32 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRP   32 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCCC
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCcC
Confidence            45699999999999999999999999999984

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.37  E-value=2.6e-07  Score=57.58  Aligned_cols=31  Identities=19%  Similarity=0.634  Sum_probs=28.7

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|..|++.|.....|+.|+++|+++++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2enh_A           10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP   40 (46)
T ss_dssp             SSSCBCTTTCCBCSSSHHHHHHGGGSCCSCC
T ss_pred             CCCcCCCCcCchhCCHHHHHHHHHHhCCCCC
Confidence            3589999999999999999999999999874

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=1.1e-07  Score=57.71  Aligned_cols=30  Identities=20%  Similarity=0.532  Sum_probs=28.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|+++|...+.|..|+++|+|+++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   38 (42)
T 2yte_A            9 KPYSCAECKETFSDNNRLVQHQKMHTVKSG   38 (42)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHHHTSCCSS
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.36  E-value=1e-07  Score=58.05  Aligned_cols=30  Identities=23%  Similarity=0.682  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|+++|...+.|+.|+++|+|+++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   38 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQRTHAGESG   38 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGGGCCCCS
T ss_pred             CCccCCCcChhhCCHHHHHHHHHhcCCCCC
Confidence            589999999999999999999999999874

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.35  E-value=1.3e-07  Score=58.50  Aligned_cols=30  Identities=33%  Similarity=0.731  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   38 (43)
T 2yrm_A            9 GAFFCNECDCRFSEEASLKRHTLQTHSDKS   38 (43)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHHHHHTCTTC
T ss_pred             CCEECCCCCCeeCChHHHHHHHHhhCCCCC
Confidence            589999999999999999999999999874

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.35  E-value=2.3e-07  Score=58.01  Aligned_cols=31  Identities=19%  Similarity=0.557  Sum_probs=28.7

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|..|++.|.....|+.|+++|+++++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eon_A           10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP   40 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHTTTTTSCCS
T ss_pred             CcccCCCCCCcccCcHHHHHHHHHhcCCCCC
Confidence            3589999999999999999999999999874

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.35  E-value=2.3e-07  Score=57.77  Aligned_cols=30  Identities=27%  Similarity=0.718  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|+.|+++|+++++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHKRVHTGERS   40 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHHCSSCCS
T ss_pred             CCcCCCCcCchhCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.35  E-value=1.3e-07  Score=58.73  Aligned_cols=30  Identities=30%  Similarity=0.615  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2emg_A           11 NPFICSECGKVFTHKTNLIIHQKIHTGERP   40 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTTTSCCCC
T ss_pred             CCEECCccCcccCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.34  E-value=1e-07  Score=57.84  Aligned_cols=30  Identities=27%  Similarity=0.609  Sum_probs=28.4

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~   39 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGP   39 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTTCCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHhhhcCCCCC
Confidence            589999999999999999999999999874

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=1.3e-07  Score=57.87  Aligned_cols=30  Identities=23%  Similarity=0.629  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2en7_A           11 KPYVCNECGKAFRSKSYLIIHTRTHTGESG   40 (44)
T ss_dssp             SSSCCTTTCCCCSSHHHHHHHHTTTCCSSS
T ss_pred             cCeECCCCCCccCCHHHHHHHhhhcCCCCC
Confidence            589999999999999999999999999874

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=1.1e-07  Score=58.98  Aligned_cols=30  Identities=20%  Similarity=0.555  Sum_probs=28.4

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (44)
T 2epv_A           11 KPYECNECGKAFIWKSLLIVHERTHAGVSG   40 (44)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGGGSSCSC
T ss_pred             cCeECCCCCcccCchHHHHHHHhHhcCCCC
Confidence            589999999999999999999999999874

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=1.6e-07  Score=58.11  Aligned_cols=30  Identities=23%  Similarity=0.648  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ep1_A           11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP   40 (46)
T ss_dssp             CSSCCSSSCCCCSSHHHHHHHHGGGSSSCC
T ss_pred             CCcCCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=1.4e-07  Score=58.63  Aligned_cols=30  Identities=23%  Similarity=0.579  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2enf_A           11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP   40 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHTTTTTSSC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHhhCCCCC
Confidence            589999999999999999999999999874

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=1.7e-07  Score=58.18  Aligned_cols=30  Identities=20%  Similarity=0.657  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|+++|.....|+.|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eq2_A           11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP   40 (46)
T ss_dssp             CSSSCCSSCCCCSSHHHHHHHGGGGCCCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=1.3e-07  Score=58.67  Aligned_cols=31  Identities=29%  Similarity=0.730  Sum_probs=28.7

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|..|++.|.....|+.|+++|+++++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (45)
T 2epu_A           10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEKS   40 (45)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHTTTSSCCC
T ss_pred             CcCccCCCCCCccCChHHHHHHHHHhCCCCC
Confidence            3589999999999999999999999999874

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=1.9e-07  Score=58.15  Aligned_cols=30  Identities=30%  Similarity=0.729  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2yth_A           11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP   40 (46)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHGGGGTTCCC
T ss_pred             cCCCCCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            589999999999999999999999999874

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=1.6e-07  Score=58.37  Aligned_cols=30  Identities=23%  Similarity=0.594  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2yti_A           11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP   40 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHTTTSCSCC
T ss_pred             cCeECCCCCcccCChhHHHHHhHhcCCCCC
Confidence            589999999999999999999999999874

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.33  E-value=1.5e-07  Score=59.51  Aligned_cols=31  Identities=19%  Similarity=0.410  Sum_probs=28.8

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|..|++.|.....|+.|+++|+++++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (48)
T 2epr_A           10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKP   40 (48)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCSCCC
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            3689999999999999999999999999874

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.33  E-value=2.9e-07  Score=56.88  Aligned_cols=30  Identities=20%  Similarity=0.443  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|+.|+++|+++++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQALHAGESG   40 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHHHHTTSCC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHHHCCCCC
Confidence            589999999999999999999999999874

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=9.3e-08  Score=58.21  Aligned_cols=30  Identities=20%  Similarity=0.553  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|+++|.....|..|+++|+|+++
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2en2_A           10 KPYKCETCGARFVQVAHLRAHVLIHTGSGP   39 (42)
T ss_dssp             CSEECTTTCCEESSHHHHHHHTHHHHSCCS
T ss_pred             CCEeCCCcChhhCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=1.9e-07  Score=58.16  Aligned_cols=31  Identities=19%  Similarity=0.418  Sum_probs=28.7

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|..|++.|.....|+.|+++|+++++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytt_A           10 EKPYQCSECGKSFSGSYRLTQHWITHTREKP   40 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHTHHHHCCC
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            4689999999999999999999999999874

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.32  E-value=1.3e-07  Score=56.78  Aligned_cols=30  Identities=17%  Similarity=0.454  Sum_probs=27.6

Q ss_pred             CCcccCC--cCCCCccCcccchhhhhhhcCCC
Q 044541          207 GGSFPCK--SCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       207 gGpy~CK--sCgKtFsSesaLqsH~RahhGek  236 (237)
                      ..+|.|.  .|++.|...+.|+.|+|+|+|++
T Consensus         6 ~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            3689998  59999999999999999999986

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=1.1e-07  Score=60.99  Aligned_cols=29  Identities=24%  Similarity=0.346  Sum_probs=27.0

Q ss_pred             CcccCCc--CCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKS--CNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKs--CgKtFsSesaLqsH~RahhGek  236 (237)
                      .||.|..  |+++|...+.|+.|+|+|||+.
T Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            8 ILLKCPTDGCDYSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             CCEECSSSSCCCEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            5999986  9999999999999999999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=1.6e-07  Score=58.55  Aligned_cols=30  Identities=27%  Similarity=0.669  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|+.|+++|+|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2en9_A           11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP   40 (46)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHTSSCC
T ss_pred             CCEECCccCcccCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.32  E-value=1.1e-07  Score=61.62  Aligned_cols=30  Identities=20%  Similarity=0.344  Sum_probs=28.4

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        23 k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   52 (54)
T 1yui_A           23 QPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHTTTSC
T ss_pred             CCccCCCCCcccCCHHHHHHHHHHhccCCC
Confidence            589999999999999999999999999874

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.31  E-value=2.4e-07  Score=57.75  Aligned_cols=30  Identities=27%  Similarity=0.648  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ely_A           11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP   40 (46)
T ss_dssp             CSBCCSSSCCCBSSTTHHHHHHHHHSCCSS
T ss_pred             CCcccCccCcccCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.31  E-value=9.9e-08  Score=53.10  Aligned_cols=26  Identities=15%  Similarity=0.414  Sum_probs=24.7

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhc
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      .+|.|..|+++|...+.|..|+|+|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHcc
Confidence            48999999999999999999999986

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.31  E-value=1.4e-07  Score=58.86  Aligned_cols=30  Identities=20%  Similarity=0.601  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|+.|+++|+|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytp_A           11 RHYECSECGKAFARKSTLIMHQRIHTGEKP   40 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTTTSCCCC
T ss_pred             CCeECCcCCcccCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.31  E-value=2.1e-07  Score=57.79  Aligned_cols=30  Identities=23%  Similarity=0.594  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytn_A           11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP   40 (46)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHGGGTSCCCC
T ss_pred             cCeECCCCCCeeCCHHHHHHHhhhcCCCCC
Confidence            589999999999999999999999999874

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.30  E-value=1.9e-07  Score=58.23  Aligned_cols=30  Identities=23%  Similarity=0.674  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2em6_A           11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKP   40 (46)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHTTTSSSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.30  E-value=1.6e-07  Score=58.37  Aligned_cols=30  Identities=20%  Similarity=0.623  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|+.|+++|+|+++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emi_A           11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP   40 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHGGGCSCCC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHhHhCCCCC
Confidence            589999999999999999999999999874

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.30  E-value=1.4e-07  Score=58.58  Aligned_cols=30  Identities=30%  Similarity=0.711  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (46)
T 2em3_A           11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHHCCCCC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.30  E-value=1.6e-07  Score=58.22  Aligned_cols=30  Identities=23%  Similarity=0.628  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p   40 (46)
T 2yts_A           11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGGGTSSCCS
T ss_pred             cCEECCCCChhhCChHHHHHHHHhcCCCCC
Confidence            589999999999999999999999999874

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.30  E-value=2e-07  Score=57.95  Aligned_cols=30  Identities=20%  Similarity=0.625  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eq1_A           11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP   40 (46)
T ss_dssp             CCCCCTTTTCCCSSHHHHHHHHTTTCCSCC
T ss_pred             CCeECCcCChhhCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=1.6e-07  Score=57.80  Aligned_cols=30  Identities=27%  Similarity=0.598  Sum_probs=28.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+++++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2yu5_A           11 NPFKCSKCDRVFTQRNYLVQHERTHARKSG   40 (44)
T ss_dssp             CSEECSSSSCEESSSHHHHHHHHHCCCCCS
T ss_pred             CCeECCCCCchhCCHHHHHHHhHhcCCCCC
Confidence            589999999999999999999999999874

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.30  E-value=2.4e-07  Score=57.71  Aligned_cols=31  Identities=16%  Similarity=0.551  Sum_probs=28.7

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|..|++.|.....|..|+++|+|+++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (46)
T 2elz_A           10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT   40 (46)
T ss_dssp             CSSCBCSSSCCBCSSHHHHHHHGGGGGSCCC
T ss_pred             CCCeeCcccCchhCCHHHHHHHHHhcCCCCC
Confidence            3589999999999999999999999999874

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.29  E-value=2.2e-07  Score=57.75  Aligned_cols=30  Identities=27%  Similarity=0.682  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|+.|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2epz_A           11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP   40 (46)
T ss_dssp             CSBCCTTTCCCBSSHHHHHHHHTTTTTCCC
T ss_pred             CCeECCCCCceeCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.29  E-value=1.4e-07  Score=58.79  Aligned_cols=30  Identities=23%  Similarity=0.659  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|+.|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2em4_A           11 RPYECIECGKAFKTKSSLICHRRSHTGEKP   40 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHHHHSSSSC
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            589999999999999999999999999874

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.29  E-value=1.7e-07  Score=58.46  Aligned_cols=30  Identities=30%  Similarity=0.670  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|+.|+++|+|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emf_A           11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP   40 (46)
T ss_dssp             CCEECSSSCCEESCHHHHHHHGGGTSCSSC
T ss_pred             CCeECCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.29  E-value=1.5e-07  Score=57.66  Aligned_cols=30  Identities=23%  Similarity=0.706  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|+++|...+.|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2eof_A           11 KPYECNECQKAFNTKSNLMVHQRTHTGESG   40 (44)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHHTTTSSC
T ss_pred             CCeECCCCCcccCCHhHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.29  E-value=1.5e-07  Score=58.66  Aligned_cols=30  Identities=27%  Similarity=0.680  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emj_A           11 KPFECAECGKSFSISSQLATHQRIHTGEKP   40 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHTTSCS
T ss_pred             CCEECCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.29  E-value=1.7e-07  Score=57.99  Aligned_cols=30  Identities=20%  Similarity=0.616  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2el4_A           11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP   40 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHGGGSSSCCC
T ss_pred             CceECCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.29  E-value=1.4e-07  Score=58.37  Aligned_cols=30  Identities=27%  Similarity=0.696  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytf_A           11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHTSCSSSS
T ss_pred             CCcCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.28  E-value=1.6e-07  Score=58.19  Aligned_cols=30  Identities=20%  Similarity=0.617  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eow_A           11 KPYKCNECGKAFRARSSLAIHQATHSGEKP   40 (46)
T ss_dssp             CCEECTTSCCEESSHHHHHHHHHHHCCCSC
T ss_pred             CCeeccccCChhcCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=1.9e-07  Score=57.97  Aligned_cols=30  Identities=20%  Similarity=0.577  Sum_probs=28.4

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|+.|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2em7_A           11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHGGGGTTCCC
T ss_pred             cCccCCCccchhCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.28  E-value=2.5e-07  Score=57.49  Aligned_cols=30  Identities=23%  Similarity=0.546  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|+++|...+.|..|+++|+|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eoq_A           11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP   40 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHHTTCCCS
T ss_pred             CCcCCCcCCchhCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.28  E-value=1.3e-07  Score=58.21  Aligned_cols=30  Identities=27%  Similarity=0.506  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (44)
T 2eox_A           11 KSYNCNECGKAFTRIFHLTRHQKIHTRKSG   40 (44)
T ss_dssp             CCEEETTTTEEESSSHHHHTTHHHHCCCCC
T ss_pred             CCeECcccCcccCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.61  E-value=9.9e-08  Score=52.68  Aligned_cols=26  Identities=19%  Similarity=0.630  Sum_probs=24.4

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhc
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      .||.|..|++.|...+.|..|+|+|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            37999999999999999999999985

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.27  E-value=2.8e-07  Score=57.23  Aligned_cols=30  Identities=20%  Similarity=0.605  Sum_probs=28.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (46)
T 2em0_A           11 KTWKCRECDMCFSQASSLRLHQNVHVGEKP   40 (46)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHGGGGSSSSC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.27  E-value=2.4e-07  Score=57.69  Aligned_cols=31  Identities=19%  Similarity=0.568  Sum_probs=28.7

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|..|++.|...+.|..|+++|+++++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytq_A           10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP   40 (46)
T ss_dssp             CCSCBCSSSCCBCSCHHHHHHHHTTTCCSCS
T ss_pred             CCCcCCCccChhhCChHHHHHHHHHhCCCCC
Confidence            3589999999999999999999999999874

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.27  E-value=2.4e-07  Score=57.34  Aligned_cols=30  Identities=23%  Similarity=0.576  Sum_probs=28.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eop_A           11 KPHECRECGKSFSFNSQLIVHQRIHTGENP   40 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTTTTTSCC
T ss_pred             CCeeCCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=2.1e-07  Score=57.31  Aligned_cols=30  Identities=20%  Similarity=0.502  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2emb_A           11 KRYECSKCQATFNLRKHLIQHQKTHAAKSG   40 (44)
T ss_dssp             SSEECTTTCCEESCHHHHHHHGGGGCCCCC
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.27  E-value=2.5e-07  Score=57.64  Aligned_cols=30  Identities=23%  Similarity=0.646  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emk_A           11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP   40 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHHHHSSCCC
T ss_pred             CceECCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.27  E-value=2.5e-07  Score=57.29  Aligned_cols=30  Identities=30%  Similarity=0.644  Sum_probs=28.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|+.|+++|+|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2eov_A           11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERH   40 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHHHHSCCSS
T ss_pred             CCccCCccChhhCCHHHHHHHHHhcCCCCC
Confidence            589999999999999999999999999874

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.27  E-value=1.8e-07  Score=58.08  Aligned_cols=30  Identities=27%  Similarity=0.657  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ep3_A           11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHTTTTTSCC
T ss_pred             CCeECCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.27  E-value=1.9e-07  Score=57.96  Aligned_cols=30  Identities=20%  Similarity=0.581  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ene_A           11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP   40 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHTTTCCCCC
T ss_pred             CCeECCCCCchhCChHHHHHHHhhcCCCCC
Confidence            589999999999999999999999999874

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.26  E-value=1.9e-07  Score=57.82  Aligned_cols=30  Identities=20%  Similarity=0.647  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+++++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2yrj_A           11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP   40 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTTTSSCCS
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=2.2e-07  Score=57.93  Aligned_cols=30  Identities=20%  Similarity=0.550  Sum_probs=28.1

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcC-CCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHG-APA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhG-ek~  237 (237)
                      .+|.|..|+++|.....|..|+++|++ +++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eoy_A           11 KCFKCNKCEKTFSCSKYLTQHERIHTRGVKS   41 (46)
T ss_dssp             CCEECSSSCCEESSSHHHHHHHTTCCSCCTT
T ss_pred             CCEECcCCCCcCCCHHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999 764

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.26  E-value=2.7e-07  Score=57.13  Aligned_cols=30  Identities=20%  Similarity=0.643  Sum_probs=28.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ytr_A           11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP   40 (46)
T ss_dssp             CTTCCTTTCCCCSSHHHHHHHHTTTTTCSC
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            589999999999999999999999999874

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.26  E-value=1.7e-07  Score=58.02  Aligned_cols=30  Identities=23%  Similarity=0.686  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|+.|+++|+|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   40 (46)
T 2eor_A           11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP   40 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHHHHHSCCC
T ss_pred             cCccCCCCCCCcCCHHHHHHHHHhcCCCCC
Confidence            589999999999999999999999999874

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.26  E-value=2.6e-07  Score=57.40  Aligned_cols=30  Identities=23%  Similarity=0.600  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytg_A           11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP   40 (46)
T ss_dssp             CSEECTTTCCEESSSHHHHTTGGGGSSCCS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.26  E-value=2e-07  Score=57.91  Aligned_cols=31  Identities=23%  Similarity=0.611  Sum_probs=28.7

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|..|+++|...+.|..|+++|+|+++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emy_A           10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP   40 (46)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHHTTSCC
T ss_pred             CcCcCCCCCCcccCcHHHHHHHHHHcCCCCC
Confidence            3589999999999999999999999999874

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.25  E-value=2.3e-07  Score=57.60  Aligned_cols=30  Identities=23%  Similarity=0.637  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ema_A           11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKP   40 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTGGGCCCC
T ss_pred             cCcCCCCCcchhCCHHHHHHHHHhcCCCCC
Confidence            589999999999999999999999999874

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.25  E-value=3.6e-07  Score=56.91  Aligned_cols=31  Identities=16%  Similarity=0.486  Sum_probs=28.7

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|..|++.|.....|+.|+++|+++++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2em8_A           10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEKL   40 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHHHCCCC
T ss_pred             CCCeECcccCchhCCHHHHHHHHHHHcCCCC
Confidence            3689999999999999999999999999874

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.25  E-value=2.4e-07  Score=57.55  Aligned_cols=30  Identities=20%  Similarity=0.618  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2eml_A           11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGGGSSCCC
T ss_pred             CCeeCCCcCCccCCHHHHHHHHHHhcCCCC
Confidence            589999999999999999999999999874

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.25  E-value=2.4e-07  Score=57.92  Aligned_cols=31  Identities=16%  Similarity=0.527  Sum_probs=28.7

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|..|++.|...+.|+.|+++|+++++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ytm_A           10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP   40 (46)
T ss_dssp             CCSSSBTTTTBCCSSHHHHHHHHHHHHSCCC
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            3589999999999999999999999999874

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.25  E-value=2.2e-07  Score=57.72  Aligned_cols=30  Identities=23%  Similarity=0.536  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ytj_A           11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHTSCCCC
T ss_pred             cCeECCCCChhhCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.25  E-value=2e-07  Score=57.36  Aligned_cols=30  Identities=20%  Similarity=0.538  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|+++|...+.|..|+++|+|+++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   38 (44)
T 2emx_A            9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKP   38 (44)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHHTSSCS
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.25  E-value=2.2e-07  Score=57.93  Aligned_cols=30  Identities=30%  Similarity=0.637  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2em2_A           11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHHCCCCS
T ss_pred             CCEECCcCCchhCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.25  E-value=2.2e-07  Score=57.74  Aligned_cols=30  Identities=20%  Similarity=0.551  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2eq0_A           11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP   40 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHTTTCCCCC
T ss_pred             CCeECCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.25  E-value=2.5e-07  Score=57.23  Aligned_cols=30  Identities=27%  Similarity=0.601  Sum_probs=28.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2eq4_A           11 KLYNCKECGKSFSRAPCLLKHERLHSGEKP   40 (46)
T ss_dssp             CCCCBTTTTBCCSCHHHHHHHHHHCCSSSC
T ss_pred             CCeECCCCCCccCchHHHHHHHHhcCCCCC
Confidence            589999999999999999999999999874

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.25  E-value=2e-07  Score=58.13  Aligned_cols=30  Identities=20%  Similarity=0.542  Sum_probs=28.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+++++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2emz_A           11 RPFKCNECGKGFGRRSHLAGHLRLHSREKS   40 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHHHHHHTTC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.24  E-value=2e-07  Score=58.09  Aligned_cols=30  Identities=27%  Similarity=0.737  Sum_probs=28.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2yto_A           11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERH   40 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHTCCCB
T ss_pred             CCEECcccCCccCCHhHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.24  E-value=2.3e-07  Score=57.45  Aligned_cols=30  Identities=23%  Similarity=0.562  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2emm_A           11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHHSCCCT
T ss_pred             CCeeCCCCChhhCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.24  E-value=2.6e-07  Score=57.17  Aligned_cols=30  Identities=17%  Similarity=0.401  Sum_probs=28.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|+++|...+.|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2epw_A           11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKH   40 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHHHCCSCCC
T ss_pred             CCeeCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.24  E-value=4.6e-07  Score=56.42  Aligned_cols=31  Identities=19%  Similarity=0.460  Sum_probs=28.7

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|..|++.|.....|..|+++|+++++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2el6_A           10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKP   40 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHGGGCCSSC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            3589999999999999999999999999874

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.24  E-value=2e-07  Score=58.10  Aligned_cols=30  Identities=20%  Similarity=0.507  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|+++|...+.|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2eoo_A           11 RPYGCNECGKNFGRHSHLIEHLKRHFREKS   40 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHHSTTS
T ss_pred             CCEEccccCcccCCHHHHHHHHHHHcCCCC
Confidence            589999999999999999999999999874

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=2.3e-07  Score=57.66  Aligned_cols=31  Identities=26%  Similarity=0.605  Sum_probs=28.7

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|..|++.|.....|+.|+++|+|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2enc_A           10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP   40 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHSCCSSC
T ss_pred             CCCcCCCCCCCcCCChHHHHHHHHHhCCCCC
Confidence            3589999999999999999999999999874

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.24  E-value=1.6e-07  Score=57.65  Aligned_cols=30  Identities=27%  Similarity=0.653  Sum_probs=28.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|+++|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2eoj_A           11 NPYECCECGKVFSRKDQLVSHQKTHSGQSG   40 (44)
T ss_dssp             CSCEETTTTEECSSHHHHHHHHTTSSSSCS
T ss_pred             cCeeCCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.24  E-value=2.3e-07  Score=57.59  Aligned_cols=30  Identities=27%  Similarity=0.647  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2ep2_A           11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHTTSSCCS
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.24  E-value=2.7e-07  Score=65.95  Aligned_cols=29  Identities=28%  Similarity=0.611  Sum_probs=27.5

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .||.|..|+|+|...+.|+.|+|+|+|++
T Consensus        12 kpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A           12 GILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             cCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            58999999999999999999999999975

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.24  E-value=2.3e-07  Score=57.67  Aligned_cols=30  Identities=23%  Similarity=0.614  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|+.|+++|+|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ytk_A           11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHHSSSSC
T ss_pred             CCEeCCcCCCccCCHHHHHHHHHHHCCCCC
Confidence            589999999999999999999999999874

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.23  E-value=2.1e-07  Score=55.52  Aligned_cols=30  Identities=27%  Similarity=0.512  Sum_probs=27.8

Q ss_pred             CcccCC--cCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCK--SCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CK--sCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|.  .|+++|...++|+.|+++|+|+++
T Consensus         5 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~   36 (38)
T 1bhi_A            5 KPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLK   36 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHHHHHTTTT
T ss_pred             cceECCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            589999  699999999999999999999874

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.23  E-value=2.9e-07  Score=56.99  Aligned_cols=30  Identities=27%  Similarity=0.611  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|+.|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2em9_A           11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGGGGTSCCC
T ss_pred             cCeECCccccccCChHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.23  E-value=2.5e-07  Score=57.62  Aligned_cols=30  Identities=30%  Similarity=0.644  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2em5_A           11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHTTTSCSCC
T ss_pred             CCeECCcCCCccCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.23  E-value=2.6e-07  Score=57.36  Aligned_cols=30  Identities=23%  Similarity=0.651  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|+.|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2yu8_A           11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP   40 (46)
T ss_dssp             SSEECSSSCCEESSSHHHHHHTHHHHSCCC
T ss_pred             CCeECCcCCchhCCHHHHHHHHHhcCCCCC
Confidence            589999999999999999999999999874

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.23  E-value=2.5e-07  Score=57.45  Aligned_cols=30  Identities=20%  Similarity=0.583  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ytd_A           11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHHTCCCS
T ss_pred             cCeECCCCCCeeCChHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.23  E-value=3e-07  Score=56.94  Aligned_cols=30  Identities=20%  Similarity=0.553  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2eme_A           11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHGGGCCCSC
T ss_pred             CCeECCCCChhhCCHHHHHHHHHhcCCCCC
Confidence            589999999999999999999999999874

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.23  E-value=2.5e-07  Score=57.48  Aligned_cols=30  Identities=23%  Similarity=0.391  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2yso_A           11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKN   40 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHSCCSC
T ss_pred             CCEEccccChhhCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.23  E-value=1.9e-07  Score=57.92  Aligned_cols=30  Identities=17%  Similarity=0.553  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|+++|...+.|..|+++|+++++
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   38 (45)
T 2epq_A            9 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVG   38 (45)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSCCCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHccCCCC
Confidence            589999999999999999999999999874

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.22  E-value=2.2e-07  Score=57.50  Aligned_cols=30  Identities=23%  Similarity=0.651  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (46)
T 2eoe_A           11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP   40 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHGGGSCCCS
T ss_pred             CCeECCCcChhhCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.22  E-value=2.3e-07  Score=57.66  Aligned_cols=30  Identities=27%  Similarity=0.624  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|+++|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (46)
T 2emh_A           11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP   40 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHHHHHCSSC
T ss_pred             CCcCCCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            589999999999999999999999999874

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.22  E-value=1.7e-07  Score=52.03  Aligned_cols=27  Identities=33%  Similarity=0.695  Sum_probs=25.4

Q ss_pred             CcccCC--cCCCCccCcccchhhhhhhcC
Q 044541          208 GSFPCK--SCNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       208 Gpy~CK--sCgKtFsSesaLqsH~RahhG  234 (237)
                      .+|.|.  .|++.|...+.|..|+|+|+|
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            379999  999999999999999999986

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.22  E-value=1.7e-07  Score=58.36  Aligned_cols=30  Identities=17%  Similarity=0.527  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2eoz_A           11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETL   40 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHHHHSSCCS
T ss_pred             CCeECcccChhhCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.22  E-value=2.4e-07  Score=57.50  Aligned_cols=30  Identities=20%  Similarity=0.583  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2emp_A           11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP   40 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHHHHHCCSC
T ss_pred             cCeECCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.22  E-value=1.3e-07  Score=53.13  Aligned_cols=26  Identities=15%  Similarity=0.514  Sum_probs=24.6

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhc
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      .||.|..|++.|...+.|+.|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            48999999999999999999999986

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.21  E-value=2.1e-07  Score=57.82  Aligned_cols=30  Identities=23%  Similarity=0.511  Sum_probs=28.1

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|+++|.....|..|+++|+++++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (46)
T 2en3_A           11 KPFQCKECGMNFSWSCSLFKHLRSHERTDP   40 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHHHHHHSCC
T ss_pred             CCeeCcccChhhCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.21  E-value=2.8e-07  Score=57.07  Aligned_cols=30  Identities=23%  Similarity=0.555  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|+++|.....|..|+++|+|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2en8_A           11 KSHTCDECGKNFCYISALRIHQRVHMGEKC   40 (46)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHTTTCCSCS
T ss_pred             CCeECCCcCcccCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.21  E-value=2.2e-07  Score=57.55  Aligned_cols=30  Identities=20%  Similarity=0.648  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2eq3_A           11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP   40 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHTTSCCCCC
T ss_pred             CCeECCCCChhhCCHHHHHHHHHHhCCCCC
Confidence            589999999999999999999999999874

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.19  E-value=4.8e-07  Score=56.03  Aligned_cols=30  Identities=20%  Similarity=0.526  Sum_probs=28.2

Q ss_pred             CcccCCcCCCCccCcccchhhhh-hhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTK-AKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~R-ahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|++ +|+|+++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~   41 (47)
T 2epx_A           11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP   41 (47)
T ss_dssp             CSBCCSSSCCCBSSHHHHHHHHTTTTTTSCS
T ss_pred             CCEECCccCchhCChHHHHHHhHhhcCCCCC
Confidence            58999999999999999999999 9999874

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.18  E-value=2.4e-07  Score=57.57  Aligned_cols=30  Identities=20%  Similarity=0.647  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   40 (46)
T 2en6_A           11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP   40 (46)
T ss_dssp             CCEEETTTTEEESSHHHHHHHHHHHSSCCC
T ss_pred             cCeECCCCCcccCchHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.17  E-value=2.5e-07  Score=57.49  Aligned_cols=31  Identities=19%  Similarity=0.575  Sum_probs=28.7

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|..|++.|.....|+.|+++|+|+++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ysp_A           10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP   40 (46)
T ss_dssp             CCSEEETTTTEEESCHHHHHHHHTTSCSCCS
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHhhCCCCC
Confidence            3589999999999999999999999999874

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.16  E-value=3.9e-07  Score=58.32  Aligned_cols=30  Identities=37%  Similarity=0.668  Sum_probs=28.0

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+++++
T Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~kk   57 (57)
T 1bbo_A           28 RPYHCTYCNFSFKTKGNLTKHMKSKAHSKK   57 (57)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHSSSSCCC
T ss_pred             CCccCCCCCchhcCHHHHHHHHHHhcccCC
Confidence            479999999999999999999999999986

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.16  E-value=3.4e-07  Score=56.85  Aligned_cols=30  Identities=30%  Similarity=0.729  Sum_probs=28.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|...+.|..|+++|+|+++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2en1_A           11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP   40 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGGSCCCC
T ss_pred             CCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999874

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.15  E-value=3.3e-07  Score=58.75  Aligned_cols=29  Identities=17%  Similarity=0.532  Sum_probs=26.1

Q ss_pred             CcccCCcCCCCccCcccchhhhh-hhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTK-AKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~R-ahhGek  236 (237)
                      .+|.|..|+++|....+|+.|+| +|+|+.
T Consensus         6 kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            6 KPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             SCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             cCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            58999999999999999999999 999874

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.15  E-value=5.4e-07  Score=57.19  Aligned_cols=29  Identities=21%  Similarity=0.544  Sum_probs=27.1

Q ss_pred             CcccCC--cCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCK--SCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CK--sCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|.  .|+++|...+.|+.|+|+|+|++
T Consensus        17 k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             TEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             CCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            589995  79999999999999999999986

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.14  E-value=6e-07  Score=67.39  Aligned_cols=30  Identities=20%  Similarity=0.392  Sum_probs=27.5

Q ss_pred             CcccCCc--CCCCccCcccchhhh-hhhcCCCC
Q 044541          208 GSFPCKS--CNRSFTTEGGLQSHT-KAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKs--CgKtFsSesaLqsH~-RahhGek~  237 (237)
                      .||.|..  |+|+|...++|++|+ |+|||+|+
T Consensus        26 KPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP   58 (73)
T 1x3c_A           26 RPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLP   58 (73)
T ss_dssp             CSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCC
T ss_pred             CCeECCCCCcChhHcCHHHHHHHhhhhCCCCCC
Confidence            6999975  999999999999997 79999985

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.14  E-value=3.8e-07  Score=54.78  Aligned_cols=28  Identities=21%  Similarity=0.405  Sum_probs=26.6

Q ss_pred             CcccCCcCCCCccCcccchhh-hhhhcCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSH-TKAKHGA  235 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH-~RahhGe  235 (237)
                      .||.|..|+++|...+.|..| +++|+|+
T Consensus         8 k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            8 HLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             cCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            589999999999999999999 9999986

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.12  E-value=5.3e-07  Score=61.05  Aligned_cols=30  Identities=23%  Similarity=0.637  Sum_probs=22.8

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|+.|+|+|+|+++
T Consensus        44 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   73 (74)
T 2lce_A           44 KPYRCNICGAQFNRPANLKTHTRIHSGEKP   73 (74)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHHHCCSCC
T ss_pred             CCEECCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            467788888888887888888888877764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.10  E-value=7.5e-07  Score=56.98  Aligned_cols=29  Identities=24%  Similarity=0.447  Sum_probs=18.4

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..|++.|.+...|..|+++|++++
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   31 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLRTHTGEK   31 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHHHHHCCC
T ss_pred             CCccCCCCcchhCChHHHHHHHHHcCCCC
Confidence            36666666666666666666666666654

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.05  E-value=1.3e-06  Score=56.60  Aligned_cols=28  Identities=39%  Similarity=0.767  Sum_probs=17.4

Q ss_pred             CcccCCcCCCCccCcccchhhh-hhhcCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHT-KAKHGA  235 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~-RahhGe  235 (237)
                      .+|.|..|++.|.+...|..|+ ++|+|+
T Consensus        29 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A           29 KPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            3566666666666666666664 455554

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.03  E-value=2e-06  Score=55.82  Aligned_cols=31  Identities=26%  Similarity=0.635  Sum_probs=28.3

Q ss_pred             CCcccCCcCCCCccCcccchhhhh-hhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTK-AKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~R-ahhGek~  237 (237)
                      ..+|.|..|++.|.....|+.|++ +|+++++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~   41 (54)
T 2eps_A           10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERP   41 (54)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHhcCCCCC
Confidence            468999999999999999999997 9999874

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.03  E-value=1.4e-06  Score=55.70  Aligned_cols=29  Identities=14%  Similarity=0.414  Sum_probs=27.2

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ||.|..|++.|.....|..|+++|+++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~   29 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRP   29 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCC
Confidence            69999999999999999999999999863

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.99  E-value=1.4e-06  Score=62.79  Aligned_cols=30  Identities=33%  Similarity=0.767  Sum_probs=25.0

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|+.|+|+||++++
T Consensus        53 ~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp   82 (98)
T 2gqj_A           53 DALKCQHCRKQFKSKAGLNYHTMAEHSAKP   82 (98)
T ss_dssp             HHHSCSSSCCCCSCHHHHHHHHHHHSCSCS
T ss_pred             CCEECCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            478888888888888888888888888763

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.98  E-value=2.7e-06  Score=52.79  Aligned_cols=30  Identities=23%  Similarity=0.633  Sum_probs=28.0

Q ss_pred             CcccCC--cCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCK--SCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CK--sCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|.  .|++.|.....|..|+++|+++++
T Consensus        11 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~   42 (48)
T 2ent_A           11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKP   42 (48)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHTTSCCCCS
T ss_pred             CCeECCCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            589998  899999999999999999999874

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=97.98  E-value=2.2e-06  Score=58.01  Aligned_cols=31  Identities=29%  Similarity=0.662  Sum_probs=28.7

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|..|++.|.....|+.|+++|+++++
T Consensus        15 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   45 (74)
T 2lce_A           15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKP   45 (74)
T ss_dssp             CCSBCCTTSSCCBSCHHHHHHHHHHHCCCCS
T ss_pred             CCCeECCCCCceeCCHHHHHHHHHHcCCCCC
Confidence            4689999999999999999999999999863

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.96  E-value=1.5e-06  Score=58.26  Aligned_cols=30  Identities=27%  Similarity=0.493  Sum_probs=23.4

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|+.|+++||++++
T Consensus        36 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A           36 RPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            368888888888888888888888887763

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.96  E-value=1.9e-06  Score=58.71  Aligned_cols=30  Identities=20%  Similarity=0.614  Sum_probs=24.9

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+|+++
T Consensus        45 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p   74 (77)
T 2cot_A           45 KPYKCDECGKAFIQRSHLIGHHRVHTGSGP   74 (77)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGGGSCCCCC
T ss_pred             cCeeCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            478888888888888888888888888763

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=97.95  E-value=2.7e-06  Score=62.61  Aligned_cols=31  Identities=26%  Similarity=0.560  Sum_probs=26.3

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|..|+++|.....|..|+|+|||+++
T Consensus        26 ~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~   56 (85)
T 2lv2_A           26 AECHLCPVCGESFASKGAQERHLRLLHAAQV   56 (85)
T ss_dssp             CTTEECTTSCCEESSHHHHHHHHHTTSCSSS
T ss_pred             CCCEECCCCCCCcCcHHHHhhhhhhccCCCc
Confidence            3578999999999999999999999988864

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.90  E-value=3.8e-06  Score=56.24  Aligned_cols=30  Identities=17%  Similarity=0.360  Sum_probs=28.1

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|+.|+++|+++++
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   37 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHERIHCTDRP   37 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGGGCCSCS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            589999999999999999999999999863

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.88  E-value=3.7e-06  Score=58.65  Aligned_cols=30  Identities=20%  Similarity=0.269  Sum_probs=27.7

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|+.|+|+|+|+++
T Consensus        61 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   90 (95)
T 2ej4_A           61 YWEECPREGKSFKAKYKLVNHIRVHTGEKS   90 (95)
T ss_dssp             CCTTCSSTTCCCSSHHHHHHHHHHHHTCCC
T ss_pred             eccCCCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            359999999999999999999999999874

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=97.83  E-value=3.6e-06  Score=57.78  Aligned_cols=29  Identities=28%  Similarity=0.544  Sum_probs=24.5

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..|++.|.+...|..|+++|+|++
T Consensus        61 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           61 KPFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            47999999999999999999999999876

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.81  E-value=5e-06  Score=56.09  Aligned_cols=28  Identities=21%  Similarity=0.686  Sum_probs=15.9

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      .+|.|..|++.|.....|+.|+|+|+++
T Consensus        41 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A           41 KPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            3555555555555555555555555554

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.80  E-value=4.1e-06  Score=56.55  Aligned_cols=30  Identities=20%  Similarity=0.567  Sum_probs=28.1

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|+.|+++|+++++
T Consensus        13 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   42 (72)
T 1x6e_A           13 KPYGCVECGKAFSRSSILVQHQRVHTGEKP   42 (72)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHGGGCSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            589999999999999999999999999863

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.80  E-value=1.7e-05  Score=53.87  Aligned_cols=31  Identities=23%  Similarity=0.648  Sum_probs=28.6

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|..|++.|.....|..|+++|+++++
T Consensus        16 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   46 (77)
T 2cot_A           16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKP   46 (77)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHTTTCCSCS
T ss_pred             CCCEECCCCCcccCCHHHHHHHHHHcCCCcC
Confidence            4699999999999999999999999999863

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.79  E-value=2.6e-06  Score=56.18  Aligned_cols=31  Identities=16%  Similarity=0.358  Sum_probs=28.9

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|..|++.|.....|..|+++|+|+++
T Consensus        37 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~   67 (73)
T 2ctu_A           37 RKTPMCEKCRKDSCQEAALNKDEGNESGKKT   67 (73)
T ss_dssp             SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCC
T ss_pred             CCCCCCCCCChhhcCHHHHHHHHHhhcCCCC
Confidence            4689999999999999999999999999874

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=97.73  E-value=5.6e-06  Score=54.47  Aligned_cols=27  Identities=30%  Similarity=0.693  Sum_probs=24.8

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhG  234 (237)
                      .+|.|..|++.|...+.|..|+++|||
T Consensus        39 ~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           39 KVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            479999999999999999999999987

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=97.73  E-value=5.7e-06  Score=52.81  Aligned_cols=27  Identities=19%  Similarity=0.477  Sum_probs=25.1

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhG  234 (237)
                      .+|.|..|++.|.....|..|+++||+
T Consensus        31 ~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C           31 KPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            589999999999999999999999996

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=97.72  E-value=1e-05  Score=57.45  Aligned_cols=30  Identities=20%  Similarity=0.520  Sum_probs=26.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.....|..|+++|+++++
T Consensus        72 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~  101 (106)
T 2ee8_A           72 KPFKCQECGKGFCQSRTLAVHKTLHMQTSS  101 (106)
T ss_dssp             CTTSCSSSCCCCSSHHHHHHHHHHTTSCCC
T ss_pred             CCeECCCcCCcccCHHHHHHHHHHhCCCCC
Confidence            579999999999999999999999998863

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.70  E-value=1.5e-05  Score=55.42  Aligned_cols=28  Identities=25%  Similarity=0.759  Sum_probs=13.7

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      ++|.|..|++.|.+...|+.|+++|+++
T Consensus         7 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   34 (96)
T 2dmd_A            7 GPHKCEVCGKCFSRKDKLKTHMRCHTGV   34 (96)
T ss_dssp             CCCCBTTTTBCCCCHHHHHHHGGGCCCC
T ss_pred             cCeECCCCCCccCCHHHHHHHHHhcCCC
Confidence            3444555555555555555555544443

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.69  E-value=8.8e-06  Score=55.36  Aligned_cols=29  Identities=24%  Similarity=0.637  Sum_probs=26.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..|++.|.....|..|+++||+++
T Consensus        46 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~   74 (86)
T 1x6h_A           46 AAFVCSKCGKTFTRRNTMARHADNCAGPD   74 (86)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCCCC
T ss_pred             cceECCCCCChhCCHHHHHHHHHHccCCC
Confidence            47999999999999999999999999875

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=97.68  E-value=2.2e-05  Score=52.58  Aligned_cols=33  Identities=21%  Similarity=0.492  Sum_probs=29.2

Q ss_pred             CCCCcccCCc--CCCCccCcccchhhhhhhcCCCC
Q 044541          205 KSGGSFPCKS--CNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       205 kSgGpy~CKs--CgKtFsSesaLqsH~RahhGek~  237 (237)
                      ....+|.|..  |++.|.....|+.|+++|+++++
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~   47 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP   47 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCS
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHhcCCCCC
Confidence            3457999988  99999999999999999999863

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.67  E-value=6.5e-06  Score=55.98  Aligned_cols=25  Identities=16%  Similarity=0.453  Sum_probs=12.4

Q ss_pred             cccCCcCCCCccCcccchhhhhhhc
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      +|.|..|++.|.....|..|+++|+
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~~h~   31 (78)
T 2d9h_A            7 GLQCEICGFTCRQKASLNWHQRKHA   31 (78)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CeECCCCCCeeCCHHHHHHHHHHhh
Confidence            4445555555555555555554444

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=97.66  E-value=7.8e-06  Score=54.95  Aligned_cols=27  Identities=22%  Similarity=0.693  Sum_probs=24.0

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhG  234 (237)
                      .+|.|..|++.|.+...|..|+|+|||
T Consensus        56 ~~~~C~~C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           56 KPHKCQVCGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             CCEECTTTSCEESSHHHHHHHHHHHC-
T ss_pred             CCCcCCCcchhhCChHHHHHHHHhhCC
Confidence            579999999999999999999999987

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.66  E-value=1e-05  Score=56.27  Aligned_cols=29  Identities=21%  Similarity=0.489  Sum_probs=25.7

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..|++.|.....|..|+|+|||++
T Consensus        63 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   91 (96)
T 2dmd_A           63 RPFKCQICPYASRNSSQLTVHLRSHTGDS   91 (96)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHhcCCC
Confidence            47999999999999999999999999876

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.66  E-value=9.5e-06  Score=54.72  Aligned_cols=30  Identities=30%  Similarity=0.594  Sum_probs=26.9

Q ss_pred             CcccCCc--CCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKS--CNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKs--CgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..  |+++|.+...|+.|+++|+++++
T Consensus        37 ~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~   68 (79)
T 2dlk_A           37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD   68 (79)
T ss_dssp             CCEECSCTTTCCEESSHHHHHHHHHHHHTSCC
T ss_pred             CCeECCCCCCcCccCCHHHHHHHHHHhCCCCC
Confidence            4799998  99999999999999999999864

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=97.65  E-value=9.7e-06  Score=56.45  Aligned_cols=28  Identities=29%  Similarity=0.740  Sum_probs=16.8

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      ||.|..|++.|.+...|..|+++|+|++
T Consensus         3 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~   30 (88)
T 1llm_C            3 PFQCRICMRNFSRSDHLTTHIRTHTGEK   30 (88)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHCCC
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHcCCCC
Confidence            5666666666666666666666665554

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.62  E-value=9.9e-06  Score=61.40  Aligned_cols=30  Identities=27%  Similarity=0.411  Sum_probs=25.2

Q ss_pred             CcccCCcCCCCccCcccchhh-hhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSH-TKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH-~RahhGek~  237 (237)
                      .+|.|..||++|...+.|..| +|+|+|+++
T Consensus        49 kpf~C~~Cgk~F~~~~~L~~H~~r~Htgekp   79 (102)
T 2ghf_A           49 SSYVCVECNFLTKRYDALSEHNLKYHPGEEN   79 (102)
T ss_dssp             CCEEETTTTEEESSTHHHHTHHHHTSTTCCC
T ss_pred             CCcCCCCCCcccCCHHHHHHHHHHhcCCCCC
Confidence            478888888888888888888 788888874

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.60  E-value=1.6e-05  Score=58.24  Aligned_cols=24  Identities=29%  Similarity=0.491  Sum_probs=12.0

Q ss_pred             cccCCcCCCCc-cCcccchhhhhhh
Q 044541          209 SFPCKSCNRSF-TTEGGLQSHTKAK  232 (237)
Q Consensus       209 py~CKsCgKtF-sSesaLqsH~Rah  232 (237)
                      +|.|..|+++| .+..+|+.|+|+|
T Consensus        34 ~~~C~~C~k~F~~~~~~L~~H~~~h   58 (96)
T 2ctd_A           34 SVSCPTCQAVGRKTIEGLKKHMENC   58 (96)
T ss_dssp             CEECTTTCSCEESSHHHHHHHHHHH
T ss_pred             CcCCCCCCCCcccCHHHHHHHHHHH
Confidence            44555555555 4445555555544

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.58  E-value=1.2e-05  Score=51.35  Aligned_cols=29  Identities=21%  Similarity=0.456  Sum_probs=25.6

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .||.|..|+|+|++.++|+.|++-+-+.|
T Consensus         7 kp~~C~~CgK~F~~~s~L~~H~py~C~~r   35 (36)
T 1fv5_A            7 ARFMCLPCGIAFSSPSTLEAHQAYYCSHR   35 (36)
T ss_dssp             CCCEETTTTEECSCHHHHHHHHHHTSTTC
T ss_pred             cCeECCCCCCccCCHhHccCcCCeECcCC
Confidence            59999999999999999999997765554

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=97.55  E-value=5.9e-05  Score=53.44  Aligned_cols=27  Identities=33%  Similarity=0.609  Sum_probs=13.7

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      +|.|..|++.|.....|..|+++|+++
T Consensus        17 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   43 (106)
T 2ee8_A           17 EFICKFCGRHFTKSYNLLIHERTHTDE   43 (106)
T ss_dssp             CCBCSSSCCBCSSHHHHHHHHHHHCCS
T ss_pred             CeECCCCCCccCCHHHHHHHHHHcCCC
Confidence            455555555555555555555555444

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=97.54  E-value=2.2e-05  Score=54.80  Aligned_cols=27  Identities=37%  Similarity=0.701  Sum_probs=25.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhG  234 (237)
                      .+|.|..|++.|.....|..|+|+|+|
T Consensus        74 ~~~~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           74 KPFQCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             CCeECCCCcCccCCHHHHHHHHHHhCC
Confidence            589999999999999999999999986

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.53  E-value=1e-05  Score=58.23  Aligned_cols=28  Identities=29%  Similarity=0.437  Sum_probs=26.5

Q ss_pred             CCcccCCcCCCCcc-CcccchhhhhhhcC
Q 044541          207 GGSFPCKSCNRSFT-TEGGLQSHTKAKHG  234 (237)
Q Consensus       207 gGpy~CKsCgKtFs-SesaLqsH~RahhG  234 (237)
                      .++|.|..|++.|. ....|+.|+++|++
T Consensus        22 ~~~~~C~~C~k~f~~~~~~L~~H~~~h~~   50 (98)
T 2gqj_A           22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQK   50 (98)
T ss_dssp             TSCCCCTTTCCCCSSCSHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCCChhhhHHHHHHHHHHHcC
Confidence            46999999999999 99999999999997

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=97.52  E-value=1.6e-05  Score=53.23  Aligned_cols=26  Identities=27%  Similarity=0.707  Sum_probs=20.5

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhc
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      .+|.|..|++.|.....|..|+|+|+
T Consensus        48 ~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           48 KPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCeECCCCCchhCCHHHHHHHHHhcC
Confidence            46888888888888888888888775

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=97.50  E-value=2.1e-05  Score=52.86  Aligned_cols=29  Identities=24%  Similarity=0.702  Sum_probs=25.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..|++.|.....|..|+++|++++
T Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   56 (82)
T 2kmk_A           28 RPYPCQYCGKRFHQKSDMKKHTFIHTGEK   56 (82)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHHTCC
T ss_pred             CCeeCCcCChhhCCHHHHHHHHHHhcCCC
Confidence            57899999999999999999999988876

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=97.50  E-value=1.5e-05  Score=61.87  Aligned_cols=28  Identities=21%  Similarity=0.561  Sum_probs=15.4

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      +|.|..|+++|.+.+.|..|+++|+|++
T Consensus        50 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k   77 (133)
T 2lt7_A           50 KYPCRYCEKVFPLAEYRTKHEIHHTGER   77 (133)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHHHTCC
T ss_pred             CeeCCccCeecccccchhhhccccCCCc
Confidence            4555555555555555555555555544

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.50  E-value=3.3e-05  Score=53.58  Aligned_cols=28  Identities=18%  Similarity=0.608  Sum_probs=17.6

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      .+|.|..|++.|.....|..|+++|+++
T Consensus        34 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   61 (95)
T 2yt9_A           34 KPYSCPVCGLRFKRKDRMSYHVRSHDGS   61 (95)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHHHHCCC
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHhcCC
Confidence            3566666666666666666666666654

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=97.50  E-value=2.1e-05  Score=53.83  Aligned_cols=30  Identities=27%  Similarity=0.682  Sum_probs=26.1

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..|++.|.+...|+.|+++|+++++
T Consensus        33 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   62 (90)
T 1a1h_A           33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP   62 (90)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCCC
T ss_pred             CCccCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            479999999999999999999999988763

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=97.49  E-value=2.2e-05  Score=51.54  Aligned_cols=29  Identities=21%  Similarity=0.495  Sum_probs=25.9

Q ss_pred             CcccCCcCCCCccCcccchhhhhh-h-cCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKA-K-HGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~Ra-h-hGek  236 (237)
                      .+|.|..|++.|.+..+|..|+++ | ++++
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~   39 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVK   39 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHHHSSSSCC
T ss_pred             cceECCCCcchhCCHHHHHHHHHHHcCCCCc
Confidence            689999999999999999999999 5 3654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.47  E-value=3.4e-05  Score=56.52  Aligned_cols=29  Identities=21%  Similarity=0.631  Sum_probs=26.6

Q ss_pred             CcccCCcCCCCccCcccchhh-hhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSH-TKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH-~RahhGek  236 (237)
                      .+|.|..|+|.|...+.|..| +++|+++.
T Consensus        61 k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p   90 (96)
T 2ctd_A           61 EMFTCHHCGKQLRSLAGMKYHVMANHNSLP   90 (96)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTCCCS
T ss_pred             CCeECCCCCCeeCCHHHHHHHhHHhcCCCC
Confidence            589999999999999999999 99998753

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=97.46  E-value=3.2e-05  Score=57.01  Aligned_cols=29  Identities=24%  Similarity=0.461  Sum_probs=25.9

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      ..+|.|..|++.|...+.|..|+++|||.
T Consensus        98 ~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           98 EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            35799999999999999999999999985

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.46  E-value=3e-05  Score=52.65  Aligned_cols=28  Identities=21%  Similarity=0.566  Sum_probs=21.4

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      .+|.|..|++.|.....|..|+++||+.
T Consensus        44 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A           44 AKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             SSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            3688888888888888888888877764

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.46  E-value=3.4e-05  Score=51.45  Aligned_cols=29  Identities=17%  Similarity=0.321  Sum_probs=24.6

Q ss_pred             CcccCC-cCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCK-SCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CK-sCgKtFsSesaLqsH~RahhGek  236 (237)
                      .||.|. .|+++|...+.|+.|+|+|...+
T Consensus        35 ~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A           35 LPVACPNQCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             SEEECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred             cCccCCcccCcccccHHHHHHHHHhhcccC
Confidence            478998 89999999999999999887665

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=97.44  E-value=2.7e-05  Score=52.46  Aligned_cols=27  Identities=26%  Similarity=0.673  Sum_probs=18.0

Q ss_pred             CcccCCc--CCCCccCcccchhhhhhhcC
Q 044541          208 GSFPCKS--CNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       208 Gpy~CKs--CgKtFsSesaLqsH~RahhG  234 (237)
                      .+|.|..  |++.|.+...|..|+++|+|
T Consensus        30 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A           30 LPYECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             CCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            4566766  77777777777777766664

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=97.43  E-value=3e-05  Score=60.16  Aligned_cols=29  Identities=28%  Similarity=0.549  Sum_probs=19.6

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..|+++|...+.|..|+|+||+++
T Consensus        77 k~~~C~~C~k~F~~~~~L~~H~~~hh~~~  105 (133)
T 2lt7_A           77 RRYQCLACGKSFINYQFMSSHIKSVHSQD  105 (133)
T ss_dssp             CCEEESSSCCEESSHHHHHHHHHHHTCCC
T ss_pred             ccccCCCCCCCcCCHHHHHHHhHHhcCCC
Confidence            46777777777777777777777766654

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.41  E-value=1.2e-05  Score=58.90  Aligned_cols=29  Identities=21%  Similarity=0.531  Sum_probs=27.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..|++.|.....|+.|+++|+|++
T Consensus        24 kpy~C~~C~k~F~~~~~L~~H~~~Ht~ek   52 (88)
T 1x6f_A           24 STYQCKHCDSKLQSTAELTSHLNIHNEEF   52 (88)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCCEeCCHHHHHHHHHHhCCCC
Confidence            58999999999999999999999999864

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=97.39  E-value=3.3e-05  Score=49.82  Aligned_cols=30  Identities=27%  Similarity=0.627  Sum_probs=27.8

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .||.|..|++.|.....|..|+++|+++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   30 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKP   30 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCC
Confidence            389999999999999999999999999863

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=97.39  E-value=3.8e-05  Score=56.46  Aligned_cols=31  Identities=32%  Similarity=0.651  Sum_probs=27.4

Q ss_pred             CCcccCCcCCCCccCcccchhhh-hhhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHT-KAKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~-RahhGek~  237 (237)
                      ..||.|..|+++|....+|..|+ ++|++|.+
T Consensus        54 ~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~R   85 (85)
T 2lv2_A           54 AQVFPCKYCPATFYSSPGLTRHINKCHPSENR   85 (85)
T ss_dssp             SSSEECTTSSCEESSHHHHHHHHHTTCTTCCC
T ss_pred             CCccCCCCCCCEeCCHHHHHHhCcccCcCCCC
Confidence            36999999999999999999995 78888753

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=97.39  E-value=3.4e-05  Score=55.18  Aligned_cols=29  Identities=34%  Similarity=0.823  Sum_probs=23.9

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..|++.|.+...|+.|+++|+|++
T Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   93 (119)
T 2jp9_A           65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK   93 (119)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCccCchhCCHHHHHHHHHHhcCCC
Confidence            47888888888888888888888888875

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=97.39  E-value=3.6e-05  Score=51.47  Aligned_cols=31  Identities=26%  Similarity=0.623  Sum_probs=28.0

Q ss_pred             CCcccCC--cCCCCccCcccchhhhhhhcCCCC
Q 044541          207 GGSFPCK--SCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       207 gGpy~CK--sCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ..+|.|.  .|++.|.....|..|+++|+++++
T Consensus        17 ~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~   49 (73)
T 1f2i_G           17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKP   49 (73)
T ss_dssp             CCCEECSSTTBCCEESSHHHHHHHHHHHHCCCC
T ss_pred             CCccCCcCCCCCCccCCHHHHHHHHHhhCCCCC
Confidence            3689997  699999999999999999999863

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=97.35  E-value=3.2e-05  Score=60.34  Aligned_cols=29  Identities=24%  Similarity=0.689  Sum_probs=16.1

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..|++.|.....|..|+++|+|++
T Consensus       160 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~k  188 (190)
T 2i13_A          160 KPYKCPECGKSFSRRDALNVHQRTHTGKK  188 (190)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHTTC----
T ss_pred             CCeECCCCCCccCCHHHHHHHHHhcCCCC
Confidence            35666666666666666666666666655

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.35  E-value=4.5e-05  Score=54.76  Aligned_cols=29  Identities=24%  Similarity=0.520  Sum_probs=17.8

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..|++.|.+...|+.|+++|++++
T Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   93 (124)
T 2dlq_A           65 QVFTCSVCQETFRRRMELRLHMVSHTGEM   93 (124)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSSC
T ss_pred             CCeECCCCCCccCCHHHHHHHHHHcCCCC
Confidence            35666666666666666666666666554

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.32  E-value=6.1e-05  Score=53.85  Aligned_cols=28  Identities=25%  Similarity=0.585  Sum_probs=15.3

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      +|.|..|++.|.....|+.|+++|++++
T Consensus        37 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~   64 (110)
T 2csh_A           37 PYGCGVCGKKFKMKHHLVGHMKIHTGIK   64 (110)
T ss_dssp             SEECTTTSCEESSSHHHHHHHTTTCCCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            4555555555555555555555555543

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=97.31  E-value=6.5e-05  Score=56.61  Aligned_cols=30  Identities=20%  Similarity=0.545  Sum_probs=22.3

Q ss_pred             CcccCCc--CCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKS--CNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKs--CgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.|..  |++.|.....|..|+|+|+|+++
T Consensus       119 ~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~  150 (155)
T 2rpc_A          119 KPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS  150 (155)
T ss_dssp             CSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCC
T ss_pred             CCccCCCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            4677775  77777777777777777777763

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.29  E-value=8.1e-05  Score=53.60  Aligned_cols=30  Identities=20%  Similarity=0.322  Sum_probs=27.4

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      ..+|.|..|++.|.....|+.|+++||...
T Consensus        78 ~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~  107 (115)
T 2dmi_A           78 QKVLKCMYCGHSFESLQDLSVHMIKTKHYQ  107 (115)
T ss_dssp             CSSCBCSSSCCBCSSHHHHHHHHHHTTTTT
T ss_pred             CcceECCCCCCccCCHHHHHHHHHHhCCcc
Confidence            468999999999999999999999998754

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.28  E-value=6.1e-05  Score=51.09  Aligned_cols=27  Identities=26%  Similarity=0.667  Sum_probs=23.9

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhG  234 (237)
                      .+|.|..|++.|.....|..|++.+|.
T Consensus        37 ~~~~C~~C~k~f~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A           37 LRFPCEFCGKRFEKPDSVAAHRSKSHP   63 (78)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHTST
T ss_pred             cccCCCCCCchhCCHHHHHHHHHHhCC
Confidence            589999999999999999999965554

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=97.27  E-value=9.6e-05  Score=53.54  Aligned_cols=29  Identities=28%  Similarity=0.590  Sum_probs=22.8

Q ss_pred             CcccCC--cCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCK--SCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CK--sCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|.  .|++.|.+.+.|..|+++|++++
T Consensus        91 ~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k  121 (124)
T 1ubd_C           91 RPYVCPFDGCNKKFAQSTNLKSHILTHAKAK  121 (124)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC---
T ss_pred             CceECCCCCCCCccCCHHHHHHHHHHHcccc
Confidence            579995  59999999999999999999876

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.23  E-value=0.00012  Score=50.76  Aligned_cols=29  Identities=28%  Similarity=0.690  Sum_probs=26.0

Q ss_pred             CcccCCcCCCCccCcccchhhhh-hhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTK-AKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~R-ahhGek  236 (237)
                      .+|.|..|++.|.....|+.|++ +|+|+.
T Consensus        64 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~   93 (95)
T 2yt9_A           64 KPYICQSCGKGFSRPDHLNGHIKQVHSGPS   93 (95)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHHHHTSCCCS
T ss_pred             CceECCCccchhCCHHHHHHHHHHhcCCCC
Confidence            58999999999999999999996 777754

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.20  E-value=5.5e-05  Score=54.19  Aligned_cols=29  Identities=17%  Similarity=0.393  Sum_probs=22.7

Q ss_pred             CcccCCcCCCCccCcccchhhhh-hhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTK-AKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~R-ahhGek  236 (237)
                      .+|.|..|++.|.....|+.|+| +|++++
T Consensus        68 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~   97 (107)
T 1wjp_A           68 KKLTCLECMRTFKSSFSIWRHQVEVHNQNN   97 (107)
T ss_dssp             GGGEEGGGTEECSSHHHHHHHHHHTSCCCC
T ss_pred             CCccCccccchhCCHHHHHHHHHHHcCCCC
Confidence            47888888888888888888887 776665

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.19  E-value=8e-05  Score=50.52  Aligned_cols=29  Identities=24%  Similarity=0.575  Sum_probs=26.8

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      ..+|.|..|++.|.....|..|+++||+.
T Consensus        13 ~k~~~C~~C~~~f~~~~~l~~H~~~~~~~   41 (86)
T 1x6h_A           13 EKPYACSHCDKTFRQKQLLDMHFKRYHDP   41 (86)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHhcCC
Confidence            35899999999999999999999999876

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=97.19  E-value=8.9e-05  Score=50.60  Aligned_cols=29  Identities=21%  Similarity=0.557  Sum_probs=21.8

Q ss_pred             CcccCC--cCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCK--SCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CK--sCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|.  .|++.|.+...|..|+++|+|++
T Consensus        34 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~   64 (89)
T 2wbs_A           34 KPYHCDWDGCGWKFARSDELTRHYRKHTGHR   64 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHHHCCC
T ss_pred             CCcCCCCCCCCCccCCHHHHHHHHHHcCCCC
Confidence            467776  57777877777888877777765

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=97.18  E-value=0.0001  Score=53.45  Aligned_cols=29  Identities=24%  Similarity=0.633  Sum_probs=18.3

Q ss_pred             CcccCCc--CCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKS--CNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKs--CgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..  |++.|.+...|..|+++|+|++
T Consensus        61 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~   91 (124)
T 1ubd_C           61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR   91 (124)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCCC
T ss_pred             CCeeCCCCCCcCccCCHHHHHHHHHHhCCCC
Confidence            4566653  6666666666666666666654

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.18  E-value=5.5e-05  Score=50.45  Aligned_cols=27  Identities=26%  Similarity=0.468  Sum_probs=25.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..|+++|. .+.|+.|+++ +|++
T Consensus         9 ~~~~C~~C~k~f~-~~~L~~H~~~-~~~~   35 (66)
T 2eod_A            9 RTQPCTYCTKEFV-FDTIQSHQYQ-CPRL   35 (66)
T ss_dssp             CEEECSSSCCEEE-HHHHHHHHHH-CSSS
T ss_pred             CCeeccccCCccC-HHHHHHHHHH-cCCc
Confidence            4999999999999 9999999999 8876

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.18  E-value=8.6e-05  Score=53.08  Aligned_cols=28  Identities=29%  Similarity=0.647  Sum_probs=26.4

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.| .|++.|.+...|..|+++|++++
T Consensus         9 k~~~C-~C~~~f~~~~~l~~H~~~h~~~~   36 (110)
T 2csh_A            9 KLYPC-QCGKSFTHKSQRDRHMSMHLGLR   36 (110)
T ss_dssp             CCEEC-TTSCEESSHHHHHHHHHHHSCCC
T ss_pred             CCEec-cCCCccCCHHHHHHHHHHcCCCc
Confidence            58999 99999999999999999999876

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.14  E-value=0.00015  Score=54.81  Aligned_cols=27  Identities=19%  Similarity=0.383  Sum_probs=24.4

Q ss_pred             CCcccCCcCCCCccCcccchhhhhh-hc
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKA-KH  233 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~Ra-hh  233 (237)
                      ..||.|..|+++|...+.|..|+|+ |+
T Consensus        16 ekpy~C~~Cgk~F~~~~~L~~H~r~~H~   43 (102)
T 2ghf_A           16 EGGYECKYCTFQTPDLNMFTFHVDSEHP   43 (102)
T ss_dssp             CSSEECSSCSCEESCHHHHHHHHHHHCS
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHhhCC
Confidence            3699999999999999999999985 83

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=97.09  E-value=0.00012  Score=49.99  Aligned_cols=26  Identities=31%  Similarity=0.721  Sum_probs=24.6

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhc
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      .+|.|..|++.|.....|..|+|+|.
T Consensus        64 ~~~~C~~C~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           64 RPFQCQKCDRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             CCEECSSSSCEESSHHHHHHHGGGGC
T ss_pred             CCccCCCCCcccCCHHHHHHHHHhhC
Confidence            58999999999999999999999984

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.09  E-value=0.00011  Score=49.76  Aligned_cols=29  Identities=21%  Similarity=0.493  Sum_probs=25.2

Q ss_pred             CCcccCCcCCCCccCcccchhhhh-hhcCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTK-AKHGA  235 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~R-ahhGe  235 (237)
                      ..+|.|..|++.|.....|+.|++ .|+++
T Consensus        13 ~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~   42 (77)
T 2ct1_A           13 EKPYECYICHARFTQSGTMKMHILQKHTEN   42 (77)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             CCCeECCCcCchhCCHHHHHHHHHHhcCCC
Confidence            368999999999999999999998 55553

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=97.07  E-value=0.00029  Score=49.01  Aligned_cols=29  Identities=21%  Similarity=0.525  Sum_probs=18.8

Q ss_pred             CcccCCc--CCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKS--CNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKs--CgKtFsSesaLqsH~RahhGek  236 (237)
                      ++|.|..  |++.|.....|..|+++|++++
T Consensus        14 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~   44 (100)
T 2ebt_A           14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEK   44 (100)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHHHHHSCCC
T ss_pred             cceEcCCCCCCCcccCHHHHHHHHHHhCCCC
Confidence            4666664  6666666666666666666654

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=97.02  E-value=9.4e-05  Score=51.38  Aligned_cols=27  Identities=26%  Similarity=0.593  Sum_probs=25.4

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhG  234 (237)
                      .+|.|..|+++|.....|..|+++||+
T Consensus        30 ~~~~C~~C~k~f~~~~~L~~H~~~h~~   56 (88)
T 1llm_C           30 KPFACDICGRKFARSDERKRHRDIQHI   56 (88)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHTH
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHhCC
Confidence            489999999999999999999999985

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=96.98  E-value=0.00016  Score=56.33  Aligned_cols=29  Identities=28%  Similarity=0.763  Sum_probs=16.5

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..|++.|.+...|..|+++|+|++
T Consensus       132 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~~  160 (190)
T 2i13_A          132 KPYKCPECGKSFSREDNLHTHQRTHTGEK  160 (190)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            35555555555555555555555555544

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.94  E-value=0.00011  Score=59.45  Aligned_cols=27  Identities=33%  Similarity=0.725  Sum_probs=25.3

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhc
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      .+||.|..|+|.|.+.++|++|+|+|.
T Consensus        48 ekpfyC~~C~K~F~~~~~L~~H~rsK~   74 (124)
T 1zr9_A           48 GGLHRCLACARYFIDSTNLKTHFRSKD   74 (124)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCHH
T ss_pred             CcceEcccCcchhCCHHHHHHHHhhhh
Confidence            489999999999999999999999875

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=96.94  E-value=0.00019  Score=52.77  Aligned_cols=25  Identities=24%  Similarity=0.545  Sum_probs=24.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhh
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAK  232 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~Rah  232 (237)
                      .+|.|..|++.|.....|..|+++|
T Consensus        73 ~~~~C~~C~k~f~~~~~l~~H~~~H   97 (129)
T 2wbt_A           73 SQFVCPLCLMPFSSSVSLKQHIRYT   97 (129)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHHHT
T ss_pred             CCeECCCCCcccCCHhHHHHHHHHC
Confidence            6899999999999999999999998

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=96.93  E-value=0.00016  Score=48.55  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=18.5

Q ss_pred             ccCCc---CCCCccCcccchhhhhhhc
Q 044541          210 FPCKS---CNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       210 y~CKs---CgKtFsSesaLqsH~Rahh  233 (237)
                      |.|..   |++.|.....|+.|+|+||
T Consensus        59 ~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           59 YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            77777   7777777777777777776

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.92  E-value=0.0002  Score=51.18  Aligned_cols=27  Identities=22%  Similarity=0.269  Sum_probs=16.7

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      +|.|..|++.|.....|+.|++ |++++
T Consensus        42 ~~~C~~C~~~f~~~~~l~~H~~-H~~~~   68 (107)
T 1wjp_A           42 AAVCPYCSLRFFSPELKQEHES-KCEYK   68 (107)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHH-HCSTG
T ss_pred             CccCCCCCCccCCHHHHHHHHH-cCCCC
Confidence            5666666666666666666664 66553

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.91  E-value=0.00029  Score=48.92  Aligned_cols=29  Identities=41%  Similarity=0.623  Sum_probs=25.7

Q ss_pred             CcccCCcCCCCccCcccchhhhhh-hcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKA-KHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~Ra-hhGek  236 (237)
                      -.|.|..|+++|.....|..|+++ |++++
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~   53 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGP   53 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCT
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCC
Confidence            357899999999999999999998 87764

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.88  E-value=0.00037  Score=46.81  Aligned_cols=30  Identities=27%  Similarity=0.548  Sum_probs=26.8

Q ss_pred             CcccCCc--CCCCccCcccchhhhh-hhcCCCC
Q 044541          208 GSFPCKS--CNRSFTTEGGLQSHTK-AKHGAPA  237 (237)
Q Consensus       208 Gpy~CKs--CgKtFsSesaLqsH~R-ahhGek~  237 (237)
                      .+|.|..  |++.|.+...|+.|++ +|+++++
T Consensus         6 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~   38 (79)
T 2dlk_A            6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS   38 (79)
T ss_dssp             SSEECSSTTTCCEESSHHHHHHHHHHGGGSCCC
T ss_pred             CCccCCCCCCcCccCCHHHHHHHHHHHhCCCCC
Confidence            5899987  9999999999999999 7988763

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.81  E-value=0.00026  Score=50.93  Aligned_cols=23  Identities=30%  Similarity=0.641  Sum_probs=11.9

Q ss_pred             cccCCcCCCCccCcccchhhhhh
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKA  231 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~Ra  231 (237)
                      +|.|..|++.|.+...|+.|+++
T Consensus        19 ~~~C~~C~k~f~~~~~L~~H~~~   41 (115)
T 2dmi_A           19 KFRCKDCSAAYDTLVELTVHMNE   41 (115)
T ss_dssp             SEEBSSSSCEESSHHHHHHHHHH
T ss_pred             CEECCccCchhcCHHHHHHHHHH
Confidence            45555555555555555555554

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.78  E-value=0.00027  Score=52.87  Aligned_cols=27  Identities=33%  Similarity=0.789  Sum_probs=19.6

Q ss_pred             CcccCCc--CCCCccCcccchhhhhhhcC
Q 044541          208 GSFPCKS--CNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       208 Gpy~CKs--CgKtFsSesaLqsH~RahhG  234 (237)
                      .+|.|..  |+++|.+...|..|+++|||
T Consensus       127 ~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          127 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            4677766  77777777777777777775

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.71  E-value=0.00039  Score=49.76  Aligned_cols=29  Identities=31%  Similarity=0.637  Sum_probs=25.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhh-hcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKA-KHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~Ra-hhGek  236 (237)
                      .+|.|..|++.|.+...|+.|++. |.|++
T Consensus        93 ~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~  122 (124)
T 2dlq_A           93 MPYKCSSCSQQFMQKKDLQSHMIKLHSGPS  122 (124)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHTSSCSS
T ss_pred             CCccCCCccchhCCHHHHHHHHHHHCCCCC
Confidence            589999999999999999999985 55543

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=96.70  E-value=0.00039  Score=52.31  Aligned_cols=29  Identities=28%  Similarity=0.706  Sum_probs=17.3

Q ss_pred             CcccCCc--CCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKS--CNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKs--CgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..  |++.|.....|+.|+++|+|++
T Consensus        89 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~  119 (155)
T 2rpc_A           89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEK  119 (155)
T ss_dssp             CSEECSCTTTCCEESCHHHHHHHHTTTCSSC
T ss_pred             CcccCCcCCCCCccCCHHHHHHHHHhhCCCC
Confidence            4566655  6666666666666666666554

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=96.69  E-value=0.00039  Score=49.60  Aligned_cols=29  Identities=24%  Similarity=0.701  Sum_probs=25.3

Q ss_pred             CcccCC--cCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCK--SCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CK--sCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|.  .|++.|.+...|..|+++|++++
T Consensus        35 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~   65 (119)
T 2jp9_A           35 KPYQCDFKDCERRFSRSDQLKRHQRRHTGVK   65 (119)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHHHCCC
T ss_pred             CCccCCCCCCcCccCCHHHHHHHHHHcCCCC
Confidence            479998  79999999999999999998876

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=96.59  E-value=0.00046  Score=53.74  Aligned_cols=28  Identities=18%  Similarity=0.521  Sum_probs=17.0

Q ss_pred             cccC--CcCCCCccCcccchhhhhhhcCCC
Q 044541          209 SFPC--KSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       209 py~C--KsCgKtFsSesaLqsH~RahhGek  236 (237)
                      +|.|  ..|++.|.+..+|+.|+++|+|++
T Consensus       104 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~  133 (190)
T 1tf6_A          104 VYVCHFENCGKAFKKHNQLKVHQFSHTQQL  133 (190)
T ss_dssp             CCEECSSSSCEECSSHHHHHHHHGGGSSSC
T ss_pred             eeeCCCCCCccccCCHHHHHHHHHHhCCCC
Confidence            5666  556666666666666666666554

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.54  E-value=0.00088  Score=50.03  Aligned_cols=29  Identities=14%  Similarity=0.545  Sum_probs=21.3

Q ss_pred             CcccCCc--CCCCccCcccchhhh-hhhcCCC
Q 044541          208 GSFPCKS--CNRSFTTEGGLQSHT-KAKHGAP  236 (237)
Q Consensus       208 Gpy~CKs--CgKtFsSesaLqsH~-RahhGek  236 (237)
                      .+|.|..  |+++|.+...|..|+ ++|++++
T Consensus        96 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~  127 (155)
T 2gli_A           96 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK  127 (155)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSCC
T ss_pred             CCeeCCCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            4677776  777777777777777 6777665

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=96.53  E-value=0.00027  Score=47.20  Aligned_cols=26  Identities=27%  Similarity=0.377  Sum_probs=21.6

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .||.|..|+++|.....|+   ++|+|++
T Consensus        13 k~~~C~~C~k~F~~~~~l~---~~H~~~k   38 (62)
T 1vd4_A           13 ASFKCPVCSSTFTDLEANQ---LFDPMTG   38 (62)
T ss_dssp             SEEECSSSCCEEEHHHHHH---HEETTTT
T ss_pred             CCccCCCCCchhccHHHhH---hhcCCCC
Confidence            5899999999998888776   8888875

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=96.49  E-value=0.0005  Score=45.81  Aligned_cols=25  Identities=28%  Similarity=0.749  Sum_probs=22.9

Q ss_pred             CcccCC--cCCCCccCcccchhhhhhh
Q 044541          208 GSFPCK--SCNRSFTTEGGLQSHTKAK  232 (237)
Q Consensus       208 Gpy~CK--sCgKtFsSesaLqsH~Rah  232 (237)
                      .+|.|.  .|++.|.....|..|+|+|
T Consensus        46 ~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           46 KPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            589996  4999999999999999987

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=96.43  E-value=0.001  Score=51.76  Aligned_cols=28  Identities=32%  Similarity=0.775  Sum_probs=16.9

Q ss_pred             cccC--CcCCCCccCcccchhhhhhhcCCC
Q 044541          209 SFPC--KSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       209 py~C--KsCgKtFsSesaLqsH~RahhGek  236 (237)
                      +|.|  ..|++.|.+...|+.|+++|++++
T Consensus        42 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~   71 (190)
T 1tf6_A           42 PFPCKEEGCEKGFTSLHHLTRHSLTHTGEK   71 (190)
T ss_dssp             SSCCSSTTCCCCCSSHHHHHHHHTTTTTCC
T ss_pred             CccCCCCCCChhhCCHHHHHHHHHHccCCC
Confidence            4666  556666666666666666666554

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.14  E-value=0.0017  Score=45.65  Aligned_cols=27  Identities=30%  Similarity=0.533  Sum_probs=24.5

Q ss_pred             CCCcccCCcCCCCccCcccchhhhhhh
Q 044541          206 SGGSFPCKSCNRSFTTEGGLQSHTKAK  232 (237)
Q Consensus       206 SgGpy~CKsCgKtFsSesaLqsH~Rah  232 (237)
                      .++.|.|+.||+.|+....|+.|++--
T Consensus         9 ~~~~~~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A            9 DGGRKICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             CSSCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             cCCceeCCcccccccchHHHHhhhhhc
Confidence            468999999999999999999999853

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.05  E-value=0.0066  Score=42.56  Aligned_cols=28  Identities=18%  Similarity=0.318  Sum_probs=19.1

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..|++.|. ...|+.|+++|++++
T Consensus        42 ~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A           42 RTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             CceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            4677777777665 477777777777654

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.50  E-value=0.0078  Score=42.19  Aligned_cols=27  Identities=22%  Similarity=0.354  Sum_probs=24.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .+|.|..|++.| ..+.|+.|+ .|.|++
T Consensus        16 r~~~C~~C~~~~-~~~~L~~H~-~~c~~~   42 (75)
T 2d9k_A           16 RLAVCQHCDLEL-SILKLKEHE-DYCGAR   42 (75)
T ss_dssp             CCEECSSSCCEE-CHHHHHHHH-HHHHHC
T ss_pred             cccCCcccChHh-hHHHHHHHH-hHcCCC
Confidence            499999999999 599999999 888765

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=92.92  E-value=0.023  Score=37.61  Aligned_cols=23  Identities=17%  Similarity=0.541  Sum_probs=20.3

Q ss_pred             CcccCCcCCCCccCcccchhhhh
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTK  230 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~R  230 (237)
                      .+|.|..|++.|....++..|..
T Consensus        38 k~~~C~~C~k~f~~~~~~~~~~~   60 (62)
T 1vd4_A           38 GTFRCTFCHTEVEEDESAMPKKD   60 (62)
T ss_dssp             TEEBCSSSCCBCEECTTCSCCCC
T ss_pred             CCEECCCCCCccccCcccccccc
Confidence            58999999999999999887753

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=91.80  E-value=0.037  Score=35.93  Aligned_cols=27  Identities=33%  Similarity=0.591  Sum_probs=25.0

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      .|+|+.|-+.|.+...|+.|...+|.+
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            499999999999999999999988865

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=91.50  E-value=0.071  Score=33.82  Aligned_cols=22  Identities=5%  Similarity=0.074  Sum_probs=19.8

Q ss_pred             CCCccCcccchhhhhhhcCCCC
Q 044541          216 NRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       216 gKtFsSesaLqsH~RahhGek~  237 (237)
                      +|.|.....|+.|+++|+|+++
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~   24 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQP   24 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCC
T ss_pred             ccccCCCcchhhHHHhcCCCCC
Confidence            5789999999999999999874

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=90.18  E-value=0.05  Score=42.57  Aligned_cols=26  Identities=31%  Similarity=0.401  Sum_probs=23.7

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhh
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAK  232 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~Rah  232 (237)
                      .+.|.|..|++.|++..+|++|.+.+
T Consensus        91 ~~~~~C~~C~~~f~s~~~~~~H~~gk  116 (127)
T 1zu1_A           91 DRSKCCPVCNMTFSSPVVAESHYIGK  116 (127)
T ss_dssp             CTTTEETTTTEECSSHHHHHHHHTSH
T ss_pred             CCCeEcCCCCCEeCCHHHHHHHHCCH
Confidence            47899999999999999999998765

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.46  E-value=0.086  Score=34.08  Aligned_cols=20  Identities=25%  Similarity=0.456  Sum_probs=18.5

Q ss_pred             CcccCCcCCCCccCcccchh
Q 044541          208 GSFPCKSCNRSFTTEGGLQS  227 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqs  227 (237)
                      .+|.|..|++.|.+...|+.
T Consensus        17 ~~~~C~~C~k~f~~~~~l~~   36 (73)
T 2ctu_A           17 RSQKCSKCGIIFIRRSTLSR   36 (73)
T ss_dssp             SEEECSSSCCEEECCCCCCC
T ss_pred             CCeeCCcccchhCCHHHhCc
Confidence            58999999999999999976

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=88.43  E-value=0.18  Score=31.96  Aligned_cols=14  Identities=7%  Similarity=0.166  Sum_probs=12.7

Q ss_pred             CcccCCcCCCCccC
Q 044541          208 GSFPCKSCNRSFTT  221 (237)
Q Consensus       208 Gpy~CKsCgKtFsS  221 (237)
                      .+|.|..|++.|++
T Consensus        40 k~~~C~~C~k~F~~   53 (54)
T 2eps_A           40 RPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCSSSSCCSSCC
T ss_pred             CCccCCCCCCCCCC
Confidence            58999999999986

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=87.49  E-value=0.1  Score=40.76  Aligned_cols=25  Identities=20%  Similarity=0.445  Sum_probs=22.5

Q ss_pred             CcccCCcCCCCccCcccchhhh--hhh
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHT--KAK  232 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~--Rah  232 (237)
                      .++.|..|+.+|++.++++.|.  |.|
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH   57 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKH   57 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHH
Confidence            5799999999999999999999  554

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=87.08  E-value=0.17  Score=38.82  Aligned_cols=27  Identities=26%  Similarity=0.575  Sum_probs=23.2

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      ....+|=.|||.|.   .|..|.++|||-.
T Consensus        19 ~d~iiClecGK~fK---~LkRHL~~~hglt   45 (87)
T 2jsp_A           19 DDHIVCLECGGSFK---SLKRHLTTHHSMT   45 (87)
T ss_dssp             SSCEECTBTCCEES---BHHHHHHHTTCSC
T ss_pred             CCceEecccchhhH---HHHHHHHHccCCC
Confidence            35789999999997   5899999999864

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.05  E-value=0.18  Score=37.45  Aligned_cols=26  Identities=27%  Similarity=0.496  Sum_probs=21.7

Q ss_pred             cccCCcCCCCcc-------CcccchhhhhhhcC
Q 044541          209 SFPCKSCNRSFT-------TEGGLQSHTKAKHG  234 (237)
Q Consensus       209 py~CKsCgKtFs-------SesaLqsH~RahhG  234 (237)
                      --+|++|++.|+       .-++|..|.+.+|.
T Consensus        28 ~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~   60 (76)
T 2djr_A           28 YATCRLCGRQVSRGPGVNVGTTALWKHLKSMHR   60 (76)
T ss_dssp             CEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTH
T ss_pred             EEECCCCCCccCCCCCCCCchHHHHHHHHHHCH
Confidence            568999999998       35689999988884

>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_V

Probab=85.56  E-value=0.16  Score=53.15  Aligned_cols=33  Identities=18%  Similarity=0.425  Sum_probs=0.0

Q ss_pred             CCCCCCCCcccCCcCCCCccCcccchhhhhhhc
Q 044541          201 QQPHKSGGSFPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       201 ~qTPkSgGpy~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      ++.|+++..|.|+.|+..|.+..+|..|+.+|.
T Consensus       172 p~~~~~~~~y~C~VC~a~F~S~~~L~~HqttHs  204 (1275)
T 1ej6_B          172 PPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG  204 (1275)
T ss_dssp             ---------------------------------
T ss_pred             CCCcccccceehhhhhhhhCCHHHHHHHHHhcc
Confidence            356778777999999999999999999997764

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=84.28  E-value=0.38  Score=33.31  Aligned_cols=27  Identities=30%  Similarity=0.427  Sum_probs=18.5

Q ss_pred             ccC--CcCCCCccCcccchhhh-hhhcCCC
Q 044541          210 FPC--KSCNRSFTTEGGLQSHT-KAKHGAP  236 (237)
Q Consensus       210 y~C--KsCgKtFsSesaLqsH~-RahhGek  236 (237)
                      |.|  ..|++.|.+...|+.|. +.|.|.+
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~   31 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQD   31 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCC
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcc
Confidence            556  45778888888888886 5666543

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=83.46  E-value=0.33  Score=33.61  Aligned_cols=26  Identities=19%  Similarity=0.475  Sum_probs=23.6

Q ss_pred             CcccCC--cCCCCccCcccchhhhhhhc
Q 044541          208 GSFPCK--SCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       208 Gpy~CK--sCgKtFsSesaLqsH~Rahh  233 (237)
                      .+|.|.  .|++.|.....|..|+|.+|
T Consensus        37 ~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A           37 EPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            489995  99999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.01
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.0
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.82
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.8
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.8
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.8
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.71
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.68
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.65
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.61
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.52
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.51
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.46
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.4
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.31
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.28
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.26
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.25
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.21
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.14
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.05
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.75
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.7
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.63
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.51
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.5
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.42
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.05
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.76
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.7
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	96.49
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.31
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.27
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.97
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.95
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.63
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.59
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.49
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.36
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	95.26
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.72
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.49
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	93.91
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	93.7
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.94
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	92.7
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	92.47
d1y0jb1	36	U-shaped transcription factor, different fingers {	92.45
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	90.95
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	90.7
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	89.53
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	83.1
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	82.57
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	80.08

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.5e-11  Score=73.82  Aligned_cols=29  Identities=24%  Similarity=0.579  Sum_probs=27.8

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .||.|..|||+|...++|+.|+|+|||||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            38999999999999999999999999997

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.00  E-value=3.9e-11  Score=73.91  Aligned_cols=29  Identities=28%  Similarity=0.645  Sum_probs=27.9

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .||.|..|+|+|+..+.|+.|+|+|||||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            48999999999999999999999999997

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=3.4e-10  Score=71.59  Aligned_cols=28  Identities=21%  Similarity=0.611  Sum_probs=27.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      .||.|..|||+|+..+.|+.|+|+|+||
T Consensus         6 kpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           6 KPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            5999999999999999999999999997

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=5e-10  Score=71.90  Aligned_cols=29  Identities=24%  Similarity=0.696  Sum_probs=27.7

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      ..||.|..|||+|+..++|..|+|+||||
T Consensus        10 ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2          10 RRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             CCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            36999999999999999999999999997

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3e-10  Score=69.07  Aligned_cols=26  Identities=23%  Similarity=0.727  Sum_probs=24.9

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhc
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      .||.|..|||+|+..+.|+.|+|+||
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            48999999999999999999999997

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=3.1e-10  Score=69.62  Aligned_cols=27  Identities=30%  Similarity=0.762  Sum_probs=26.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhG  234 (237)
                      .||.|..|+|+|+..++|+.|+|+|||
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             cCccCCCCcCEecccccccccCCCccC
Confidence            599999999999999999999999998

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.6e-09  Score=67.30  Aligned_cols=28  Identities=21%  Similarity=0.592  Sum_probs=26.6

Q ss_pred             CcccCCc--CCCCccCcccchhhhhhhcCC
Q 044541          208 GSFPCKS--CNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       208 Gpy~CKs--CgKtFsSesaLqsH~RahhGe  235 (237)
                      .||.|..  |||+|...++|+.|+|+||||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            4899988  999999999999999999997

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.1e-09  Score=66.96  Aligned_cols=29  Identities=31%  Similarity=0.679  Sum_probs=27.0

Q ss_pred             CcccC--CcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPC--KSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~C--KsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .||.|  ..|+|+|+..++|+.|+|+|||||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            48999  579999999999999999999997

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.9e-09  Score=66.84  Aligned_cols=28  Identities=25%  Similarity=0.666  Sum_probs=26.4

Q ss_pred             CcccCCc--CCCCccCcccchhhhhhhcCC
Q 044541          208 GSFPCKS--CNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       208 Gpy~CKs--CgKtFsSesaLqsH~RahhGe  235 (237)
                      .||.|..  |||+|+..++|..|+|+||||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            4899976  999999999999999999997

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=3.7e-09  Score=68.81  Aligned_cols=31  Identities=26%  Similarity=0.635  Sum_probs=28.5

Q ss_pred             CCcccCCcCCCCccCcccchhhhh-hhcCCCC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTK-AKHGAPA  237 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~R-ahhGek~  237 (237)
                      ..||.|..|||+|+..++|+.|+| +|+|+|+
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekp   34 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERP   34 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCC
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcC
Confidence            469999999999999999999975 7999985

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=1e-08  Score=65.38  Aligned_cols=29  Identities=28%  Similarity=0.521  Sum_probs=27.5

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .||.|..|+|.|...++|+.|+|+|+.+.
T Consensus         6 kPy~C~~C~k~F~~~~~L~~H~r~Ht~~~   34 (35)
T d1srka_           6 RPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             ccccCCCCCCcccChHHHHHHccccCCcC
Confidence            59999999999999999999999999875

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=1.1e-08  Score=68.58  Aligned_cols=30  Identities=20%  Similarity=0.492  Sum_probs=28.2

Q ss_pred             CCcccCCc--CCCCccCcccchhhhhhhcCCC
Q 044541          207 GGSFPCKS--CNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       207 gGpy~CKs--CgKtFsSesaLqsH~RahhGek  236 (237)
                      .+||.|..  |+|+|+..++|..|+|+|||+|
T Consensus        16 ekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             TTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             CCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            47999977  9999999999999999999997

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.3e-08  Score=64.59  Aligned_cols=29  Identities=24%  Similarity=0.574  Sum_probs=27.4

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .||.|..||++|...+.|+.|+|+||++.
T Consensus         7 kPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           7 KPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            59999999999999999999999999873

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=1.8e-08  Score=62.04  Aligned_cols=27  Identities=26%  Similarity=0.741  Sum_probs=25.4

Q ss_pred             CcccCCc--CCCCccCcccchhhhhhhcC
Q 044541          208 GSFPCKS--CNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       208 Gpy~CKs--CgKtFsSesaLqsH~RahhG  234 (237)
                      .||.|..  |+|+|...+.|+.|+|+|||
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            4899976  99999999999999999998

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=9.6e-08  Score=58.51  Aligned_cols=26  Identities=27%  Similarity=0.608  Sum_probs=24.4

Q ss_pred             CcccCCc--CCCCccCcccchhhhhhhc
Q 044541          208 GSFPCKS--CNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       208 Gpy~CKs--CgKtFsSesaLqsH~Rahh  233 (237)
                      .||.|..  |||+|...++|+.|+|+||
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            4899977  9999999999999999997

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=6.7e-08  Score=63.84  Aligned_cols=29  Identities=28%  Similarity=0.628  Sum_probs=25.0

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .+|.| .|||+|+...+|+.|+|+|+|+++
T Consensus         2 K~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekp   30 (53)
T d2csha1           2 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRP   30 (53)
T ss_dssp             CCEEC-TTSCEESSHHHHHHHHHHHSCCCS
T ss_pred             cCCCC-CCCCeECCHHHhHHHhhccccccC
Confidence            48999 599999999999999999999874

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=6.9e-08  Score=61.63  Aligned_cols=29  Identities=31%  Similarity=0.627  Sum_probs=26.7

Q ss_pred             cccCCc--CCCCccCcccchhhhhhhcCCCC
Q 044541          209 SFPCKS--CNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       209 py~CKs--CgKtFsSesaLqsH~RahhGek~  237 (237)
                      .|.|..  |||+|.....|+.|+|+|+|+|+
T Consensus         1 tf~C~~~~C~k~F~~~~~L~~H~r~Htgekp   31 (36)
T d2dlka2           1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRD   31 (36)
T ss_dssp             CEECSCTTTCCEESSHHHHHHHHHHHHTSCC
T ss_pred             CeECCCCCCCCeeCChhHhccccCeeCCCCC
Confidence            388975  99999999999999999999985

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=1.3e-07  Score=60.06  Aligned_cols=28  Identities=32%  Similarity=0.546  Sum_probs=26.1

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhcC
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~RahhG  234 (237)
                      ..||.|..|+++|+..++|+.|+|+|.+
T Consensus         9 eKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           9 IKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             SSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             ccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            3699999999999999999999999975

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=2.5e-07  Score=57.93  Aligned_cols=28  Identities=21%  Similarity=0.637  Sum_probs=26.1

Q ss_pred             CcccCCc--CCCCccCcccchhhhhhhcCC
Q 044541          208 GSFPCKS--CNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       208 Gpy~CKs--CgKtFsSesaLqsH~RahhGe  235 (237)
                      .||.|..  |+|+|+..++|.+|+|+|+..
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            5999977  999999999999999999975

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.8e-07  Score=59.40  Aligned_cols=28  Identities=29%  Similarity=0.628  Sum_probs=25.9

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      .||.|..|+|+|+..++|..|++.+|++
T Consensus         7 kP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           7 KPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CCEeCCCCcccccchHHHHHHcccccCC
Confidence            6999999999999999999999887765

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=5.1e-07  Score=55.52  Aligned_cols=27  Identities=15%  Similarity=0.407  Sum_probs=26.3

Q ss_pred             ccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          210 FPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       210 y~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      |.|.+||+.+...+-|+.|.|+|||+|
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            899999999999999999999999986

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=2.7e-06  Score=55.89  Aligned_cols=25  Identities=24%  Similarity=0.577  Sum_probs=24.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhh
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAK  232 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~Rah  232 (237)
                      .||.|..||++|...+.|..|+|+|
T Consensus        29 kpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1          29 RPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             cCCcCCCcCCEecCHHHHHHHHhcC
Confidence            5899999999999999999999998

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=4.3e-06  Score=50.32  Aligned_cols=26  Identities=23%  Similarity=0.732  Sum_probs=25.1

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhG  234 (237)
                      |+.|..|+|.|+....|.-|+|.|||
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            68999999999999999999999997

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=5.9e-06  Score=50.52  Aligned_cols=27  Identities=22%  Similarity=0.577  Sum_probs=25.8

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      .+.|..|||+|.-.+-|.+|+-+||||
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            588999999999999999999999997

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.51  E-value=1.1e-05  Score=52.28  Aligned_cols=29  Identities=24%  Similarity=0.563  Sum_probs=27.0

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      ..|.|+.|+|.|.+..+|-.|+++|.-+|
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcchH
Confidence            37999999999999999999999998776

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=1.4e-05  Score=48.40  Aligned_cols=26  Identities=23%  Similarity=0.608  Sum_probs=25.0

Q ss_pred             cCCcCCCCccCcccchhhhhhhcCCC
Q 044541          211 PCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       211 ~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .|..|.|+|-+..-|.-|+|.||||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999999996

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=1.5e-05  Score=49.06  Aligned_cols=29  Identities=38%  Similarity=0.702  Sum_probs=26.2

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      ||.|+.|+-+|....+|..|++.++.-++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKaH~kk   29 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKAHSKK   29 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSSSCCC
T ss_pred             CcccceeeeeEeeccchhHhhhhhhhccC
Confidence            79999999999999999999999876553

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=6e-05  Score=46.16  Aligned_cols=26  Identities=31%  Similarity=0.630  Sum_probs=24.6

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhc
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      .||.|..|||.|..+.....|.++|.
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCcccchhhhhhhcchhhhhhhhhcc
Confidence            59999999999999999999999995

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.76  E-value=0.00021  Score=42.59  Aligned_cols=24  Identities=29%  Similarity=0.765  Sum_probs=23.0

Q ss_pred             ccCCcCCCCccCcccchhhhhhhc
Q 044541          210 FPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       210 y~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      |.|--|.|+|--.++|.+|+|.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999996

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00016  Score=44.52  Aligned_cols=27  Identities=33%  Similarity=0.789  Sum_probs=24.8

Q ss_pred             CcccCCc--CCCCccCcccchhhhhhhcC
Q 044541          208 GSFPCKS--CNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       208 Gpy~CKs--CgKtFsSesaLqsH~RahhG  234 (237)
                      .||.|+.  |+|++...+.|..|++++||
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            3899965  99999999999999999997

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00016  Score=51.49  Aligned_cols=27  Identities=33%  Similarity=0.725  Sum_probs=25.3

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhhc
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      +|+|-|-.|+|.|.+..+|+.|.|++.
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~ksKk   39 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFRSKD   39 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCHH
T ss_pred             CCEEecccccCccCCHHHHHHHHcccH
Confidence            589999999999999999999999874

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.00038  Score=44.19  Aligned_cols=30  Identities=20%  Similarity=0.434  Sum_probs=28.1

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAPA  237 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek~  237 (237)
                      .++.|..|||.|.--..|.+|.-.|.||++
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekp   33 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKP   33 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence            478999999999999999999999999985

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.00044  Score=42.27  Aligned_cols=28  Identities=21%  Similarity=0.502  Sum_probs=25.1

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      .||.|..|.-.-..+++|.-|.|.|||.
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CcceeeecccccCCchheEEeeecccCc
Confidence            5999999987777889999999999984

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0012  Score=40.96  Aligned_cols=28  Identities=14%  Similarity=0.572  Sum_probs=24.4

Q ss_pred             CcccCCc--CCCCccCcccchhhh-hhhcCC
Q 044541          208 GSFPCKS--CNRSFTTEGGLQSHT-KAKHGA  235 (237)
Q Consensus       208 Gpy~CKs--CgKtFsSesaLqsH~-RahhGe  235 (237)
                      .||.|..  |+|+|+..+---.|+ |+|..|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            4899966  999999999999997 998654

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.00088  Score=42.18  Aligned_cols=27  Identities=30%  Similarity=0.636  Sum_probs=22.7

Q ss_pred             cccC--CcCCC---CccCcccchhhhhhhcCC
Q 044541          209 SFPC--KSCNR---SFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       209 py~C--KsCgK---tFsSesaLqsH~RahhGe  235 (237)
                      .|.|  ..|.|   .|.+...|..|+|.||||
T Consensus         2 ~y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           2 EFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CeEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence            3666  56665   699999999999999997

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.63  E-value=0.0011  Score=40.55  Aligned_cols=25  Identities=24%  Similarity=0.682  Sum_probs=22.8

Q ss_pred             CcccC--CcCCCCccCcccchhhhhhh
Q 044541          208 GSFPC--KSCNRSFTTEGGLQSHTKAK  232 (237)
Q Consensus       208 Gpy~C--KsCgKtFsSesaLqsH~Rah  232 (237)
                      -||.|  ..|++.|++.+-|.+|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            38999  56999999999999999998

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0011  Score=41.27  Aligned_cols=28  Identities=18%  Similarity=0.608  Sum_probs=26.4

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      .||.|+.|+..|....-+.-|.|.|.|.
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCcccchHHHHhhccccceEeeecccCc
Confidence            5999999999999999999999999885

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0014  Score=39.69  Aligned_cols=26  Identities=19%  Similarity=0.566  Sum_probs=23.9

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhc
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      .||.|+.|.-+-.-.+.|..|.|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            48999999998888999999999995

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.36  E-value=0.0023  Score=39.25  Aligned_cols=28  Identities=32%  Similarity=0.769  Sum_probs=25.6

Q ss_pred             CcccC--CcCCCCccCcccchhhhhhhcCC
Q 044541          208 GSFPC--KSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       208 Gpy~C--KsCgKtFsSesaLqsH~RahhGe  235 (237)
                      .||.|  ..|.|.|.+--.|.+|.-+||||
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            48999  56999999999999999999997

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0041  Score=38.13  Aligned_cols=29  Identities=24%  Similarity=0.565  Sum_probs=25.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGAP  236 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGek  236 (237)
                      .||.|.+|.-...-.++|.-|.+++|+.-
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            38999999876777899999999999864

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.72  E-value=0.0032  Score=37.33  Aligned_cols=23  Identities=35%  Similarity=0.742  Sum_probs=21.2

Q ss_pred             cccCCcCCCCccCcccchhhhhh
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKA  231 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~Ra  231 (237)
                      ||.|.+|+..|-....||+|+-.
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999743

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.49  E-value=0.004  Score=38.08  Aligned_cols=28  Identities=25%  Similarity=0.567  Sum_probs=26.3

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      --|.|.-|..+|.....|.-|+-.||||
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            3699999999999999999999999996

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=93.91  E-value=0.0068  Score=37.55  Aligned_cols=27  Identities=37%  Similarity=0.769  Sum_probs=24.3

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      ||.|..|+|.|+...-|.+|++.=|+.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            799999999999999999998876654

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.0078  Score=36.38  Aligned_cols=25  Identities=20%  Similarity=0.477  Sum_probs=23.1

Q ss_pred             cccCCcCCCCccCcccchhhhhhhc
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~Rahh  233 (237)
                      |-.|..|+-++++..+|..|.|+|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            5689999999999999999999995

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.94  E-value=0.0089  Score=35.96  Aligned_cols=24  Identities=21%  Similarity=0.670  Sum_probs=21.9

Q ss_pred             ccC--CcCCCCccCcccchhhhhhhc
Q 044541          210 FPC--KSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       210 y~C--KsCgKtFsSesaLqsH~Rahh  233 (237)
                      |.|  ..|+|+|...++|.-|+-+||
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            677  679999999999999999987

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.70  E-value=0.012  Score=37.93  Aligned_cols=26  Identities=31%  Similarity=0.653  Sum_probs=24.3

Q ss_pred             CcccC--CcCCCCccCcccchhhhhhhc
Q 044541          208 GSFPC--KSCNRSFTTEGGLQSHTKAKH  233 (237)
Q Consensus       208 Gpy~C--KsCgKtFsSesaLqsH~Rahh  233 (237)
                      .||.|  ..|+..|.++..|..|.+.|.
T Consensus         5 kPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           5 KPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CceecCCCCccccccchHHHHHhhhhhe
Confidence            59999  899999999999999999885

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.019  Score=39.00  Aligned_cols=26  Identities=31%  Similarity=0.735  Sum_probs=23.7

Q ss_pred             CCcccCCcCCCCccCcccchhhhhhh
Q 044541          207 GGSFPCKSCNRSFTTEGGLQSHTKAK  232 (237)
Q Consensus       207 gGpy~CKsCgKtFsSesaLqsH~Rah  232 (237)
                      ++-|.|-.|+|.|.-...|.+|..-|
T Consensus         4 ~~l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           4 AGILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             cceeeccccccccCCHHHHhHhHHhc
Confidence            57899999999999999999998765

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.45  E-value=0.015  Score=36.67  Aligned_cols=24  Identities=25%  Similarity=0.616  Sum_probs=21.8

Q ss_pred             CcccCCcCCCCccCcccchhhhhh
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKA  231 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~Ra  231 (237)
                      .-|+|..||-.|++.+.|..||.-
T Consensus         7 arf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             cceeccccceeecChhHHHhhhhe
Confidence            479999999999999999999864

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.95  E-value=0.025  Score=34.37  Aligned_cols=28  Identities=29%  Similarity=0.543  Sum_probs=23.2

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcCC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      +||.|..|+---.+.++|..|++.-||.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            5899999975556789999999988773

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.70  E-value=0.027  Score=35.77  Aligned_cols=27  Identities=26%  Similarity=0.689  Sum_probs=23.9

Q ss_pred             CcccCCcCCCCccCcccchhhhhhhcC
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHTKAKHG  234 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~RahhG  234 (237)
                      ..|.|.-|||+|...+.+.+|.-.-+|
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcCC
Confidence            369999999999999999999876665

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.53  E-value=0.069  Score=32.48  Aligned_cols=27  Identities=26%  Similarity=0.712  Sum_probs=24.2

Q ss_pred             cccCCcCCCCccCcccchhhhhhhcCC
Q 044541          209 SFPCKSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       209 py~CKsCgKtFsSesaLqsH~RahhGe  235 (237)
                      -|.|.+|||...+..++.-|.-+-|.-
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn~   28 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHNS   28 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             ceechhHHHHHhhccCceEEEeecccC
Confidence            489999999999999999999887764

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=83.10  E-value=0.14  Score=31.41  Aligned_cols=28  Identities=21%  Similarity=0.546  Sum_probs=25.7

Q ss_pred             CcccC--CcCCCCccCcccchhhhhhhcCC
Q 044541          208 GSFPC--KSCNRSFTTEGGLQSHTKAKHGA  235 (237)
Q Consensus       208 Gpy~C--KsCgKtFsSesaLqsH~RahhGe  235 (237)
                      ..|+|  ..|+-+|+..--|+.|.-.||||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            46999  78999999999999999999997

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.57  E-value=0.14  Score=33.47  Aligned_cols=22  Identities=18%  Similarity=0.620  Sum_probs=19.9

Q ss_pred             CcccCCcCCCCccCcccchhhh
Q 044541          208 GSFPCKSCNRSFTTEGGLQSHT  229 (237)
Q Consensus       208 Gpy~CKsCgKtFsSesaLqsH~  229 (237)
                      .||.|..|+|.|--...|.+|.
T Consensus         4 KPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           4 KPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCEECSSSCCEESCHHHHHHHH
T ss_pred             CceeccchhhhhhhHHHHHHhh
Confidence            5999999999999998888885