Citrus Sinensis ID: 044572

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------
Protein Sequence
MPPCLLSARPPSPVITCRVSLGAVRNPPPPAPPSSLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSENQSLPQTLIYISCGWESFKE
Secondary Structure (PSIPRED)
cccEEccccccccEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccHHcccccHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEccccEEEEEEccccccEEcccccccccccHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEEEcccccccccccccccEEEEEEEccccccccccHHHHHHHHHHHHccccccccccEEEEEEEEEcccccEEEcccEEEEEccccEEEEEccEEEEEcccccccccHHHHHHHHHHHHHHccccccEEEEcccccHHHHccHHcccccEEEEEEEcHHHHHHHHHHHHHcccccccEEEEEccccccccccccccccEEEEccccccccHHHHHHHHHcccccccEEEEccccHHHHHHcccccccccEEEEEEEccccccccccccccccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccEEcccccccEEEEEEEEEEEEcccccccccccEEEccccccccccccccccHHHHcccccHHHccHHHHHHHHHHHHHHHHcccccccccccccccccccEcEccccccEEEEEEEcccccEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccEEEEEEEEEEcccccccccccHcccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccEEEcccEEEEEcccHHHHHccccEEEEccHHHEEccHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHHHEcEEEEcHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHcccEEEEEEEcccccccccccccEEEEEEcccccccc
Coil and Loop (DISEMBL)
mppcllsarppspvitcrvslgavrnppppappsslpldppaanlpsltcalqcphfqscsgcthefnlhrpiivDEATDFFKsiglldftfdscRLYGWRCRAKLavrgtstspliglyqegthnvvdiphckahhpRINAAVELLRQGIkelnvepydeddrtgdlRYVQMAVTTYntslpaseryrngKVQITLVWNsrnekspnsdkLESLAEFLWrnggsrsreHYIHSVWANfqtstnnvifgnrwrhllgetdfwenvggidislapssfgqanTRAFDILLRKLQkyvpygasvtdlyagAGVIGLSLAAARKCRSVKCVEINKESQLSFEktvsrlpksvdgniswhnadnsieplswlvgsdvlvvdpprkgldsSLVHALQSIGSAERKAKslsessssmvkeekrpwiLRAKEASVQIgsktnsenqslpqtLIYIScgwesfke
Flexible Loop (DISEMBL)
mppcllsarppspVITCRVSLGAVRNPPPPAPPSSLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELnvepydeddrtgdLRYVQMAVTTyntslpaseryrngkVQITLVwnsrnekspnsdkLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEinkesqlsfektvsrlpksvdgniswHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQsigsaerkakslsessssmvkeekrpwilRAKEASVQIgsktnsenqslpqtlIYIScgwesfke
Low Complexity Region (SEG)
MPPCLLSARPPSPVITCRVSLGAVRNppppappsslpldppaanlpslTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGsaerkakslsessssmvkeekRPWILRAKEASVQIGSKTNSENQSLPQTLIYISCGWESFKE
Disordered region (IsUnstruct)
**********************************************SLTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWN******************************YIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD*****************************************************************QTLIYISCGWE****
Disordered Region (DISOPRED)
MPPCLLSARPPSPVITCRVSLGAVRNPPPP******************TCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSENQSLPQTLIYISCGWESFK*
Disordered Region (DISEMBL)
MPPCLLSARPPSPVITCRVSLGAVRNPPPPAPPSSLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRN********LESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSI*********************KRPWILRAKEASVQIGSKTNSENQSLPQTLIYISCGWESFKE
Disordered Region (DISPRO)
MPPCLLSARPPSPVITCRVSLGAVRNPPPPAPPSSLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNS*NQSLPQTLIYISCGWESFK*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPPCLLSARPPSPVITCRVSLGAVRNPPPPAPPSSLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSENQSLPQTLIYISCGWESFKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	457	2.2.26 [Sep-21-2011]
Q6M9M7	383	Uncharacterized RNA methy	yes	no	0.743	0.887	0.353	2e-65
Q9KF10	458	Uncharacterized RNA methy	yes	no	0.680	0.679	0.256	3e-23
Q74D67	495	Uncharacterized RNA methy	yes	no	0.689	0.636	0.281	4e-23
Q97LN4	460	Uncharacterized RNA methy	yes	no	0.641	0.636	0.245	1e-22
Q837V0	457	Uncharacterized RNA methy	yes	no	0.551	0.551	0.267	2e-22
Q891A0	460	Uncharacterized RNA methy	yes	no	0.671	0.667	0.239	5e-22
Q9KEF5	463	Uncharacterized RNA methy	no	no	0.667	0.658	0.253	9e-22
Q73E18	459	Uncharacterized RNA methy	yes	no	0.680	0.677	0.248	2e-21
Q81Z48	459	Uncharacterized RNA methy	yes	no	0.682	0.679	0.246	2e-21
O31503	459	23S rRNA (uracil-C(5))-me	yes	no	0.676	0.673	0.239	4e-21

>sp|Q6M9M7|Y1998_PARUW Uncharacterized RNA methyltransferase pc1998 OS=Protochlamydia amoebophila (strain UWE25) GN=pc1998 PE=3 SV=1

 Score =  250 bits (638), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 144/407 (35%), Positives = 205/407 (50%), Gaps = 67/407 (16%)

Query: 51  ALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRG 110
           AL CPHF SC+GC+H+  +  PI  +   +F ++   L+       L GWRCRAKLAVRG
Sbjct: 9   ALSCPHFDSCAGCSHQLFVEPPIWREVIENFKET---LNPILHQGTLTGWRCRAKLAVRG 65

Query: 111 TSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRY 170
           T  +P+IGL+++G+H  ++IP C  HHPRIN AV +++  ++   + PY E  + GDLRY
Sbjct: 66  TKQNPIIGLFKKGSHEALNIPFCLVHHPRINQAVTMIQNWMERHQLNPYQEHSQAGDLRY 125

Query: 171 VQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREH 230
           +Q  V          ER  +GKVQI  V N ++  SP S     L   L       +   
Sbjct: 126 LQFVV----------ER-ASGKVQIVFVLNFKDFSSPESQIWRKLLLEL----AQETTNA 170

Query: 231 YIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLR 290
           + HS+W NF     N IF ++W  + GE   WE+  G+ I   PS+F QAN   F+ LL+
Sbjct: 171 FWHSIWVNFNPHATNTIFTDKWEKVWGEPYLWESFDGVKICFQPSNFAQANLDLFEKLLK 230

Query: 291 KLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVD 350
           K++ +V   A V + +AG G IGLS+AA  KC  +KC EIN  S+  F     +L   + 
Sbjct: 231 KVKSWVREKAKVVEFFAGVGTIGLSVAA--KCSWIKCEEINPHSKECFYYAKQQLSSEIS 288

Query: 351 GNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSS 410
             I ++   ++ E L+ L G+D ++VDPPRKGL    +  L                   
Sbjct: 289 QKIMFYTG-SADENLNLLQGADTVIVDPPRKGLSRKFIEGL------------------- 328

Query: 411 MVKEEKRPWILRAKEASVQIGSKTNSENQSLPQTLIYISCGWESFKE 457
                                       QS    LIY+SCGW+SFK+
Sbjct: 329 ---------------------------TQSSVDQLIYVSCGWDSFKK 348

Protochlamydia amoebophila (strain UWE25) (taxid: 264201)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9KF10|Y687_BACHD Uncharacterized RNA methyltransferase BH0687 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=BH0687 PE=3 SV=1

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 156/351 (44%), Gaps = 40/351 (11%)

Query: 54  CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF-----TFDSCRLYGWRCRAK 105
           CP F  C GC  +   ++        +  D  + IG +       T      + +R +A+
Sbjct: 78  CPVFNQCGGCQLQHMSYDAQLRYKQKQVQDVLERIGKITAVTVRPTIGMNEPWRYRNKAQ 137

Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
           + V       + G YQE +H ++D+  C   H   +  +  +++  +EL +  YDE+   
Sbjct: 138 VPVGEREGGLIAGFYQERSHRIIDMDECMIQHEENDKVIRQVKELARELGIRGYDEEKHR 197

Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGG 224
           G LR+V               RY     +I +V  +R E+ P+   L E + + +     
Sbjct: 198 GTLRHV-------------VARYGKNTGEIMVVLITRGEELPHKKTLIERIHKAI----- 239

Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
                 ++ S+  N      NVIFG++ + L GE   ++ +G I  +++  SF Q N   
Sbjct: 240 -----PHVKSIVQNVNPKRTNVIFGDKTKVLWGEEYIYDTIGDIKFAISARSFYQVNPEQ 294

Query: 285 FDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
             +L  +  ++     S  V D Y G G I L L  A++ + V  VEI  E+ +S  K  
Sbjct: 295 TKVLYDQALEFANLTGSETVIDAYCGIGTISLFL--AQQAKHVYGVEIVPEA-ISDAKRN 351

Query: 343 SRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHAL 391
           +RL    +   +  +A+  + P  +  G  +DV+VVDPPRKG D +L+  +
Sbjct: 352 ARLNGFANVQFAVGDAE-KVMPWWYAQGVRADVIVVDPPRKGCDEALLKTI 401

Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q74D67|Y1452_GEOSL Uncharacterized RNA methyltransferase GSU1452 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=GSU1452 PE=3 SV=1

 Score =  109 bits (273), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 167/359 (46%), Gaps = 44/359 (12%)

Query: 54  CPHFQSCSGCTHEFNLHRPIIVDEATDF-------FKSIGLLDF--TFDSCRLYGWRCRA 104
           C    SC GC     +H P  ++    F       ++++G  +   T  S     +R  A
Sbjct: 88  CKRAGSCDGCP-LIVMHYPDQLNWKRTFTERQIRRYQTLGAAEVLATLPSPNQLHYRNSA 146

Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
           KL V GT   P+IG+Y+  +H V+DI  C  HHP IN  V  +++GI +  V+ Y+    
Sbjct: 147 KLVVSGTFRRPVIGIYRRNSHQVMDIGTCPLHHPLINRVVTAVKEGIAKCKVQVYNPRTG 206

Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
           +G LRY+ + ++            R G      V   R     N +++  LA+ L ++  
Sbjct: 207 SGLLRYLVVRISE-----------RTGTAMAVFVTVER-----NYNEIHHLAKHLQQSVP 250

Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
                     V  N  +S  NVI G R   L  +    E +GGI  +++P SF Q N+  
Sbjct: 251 QVE------VVVQNVNSSEGNVILGQRDYFLTRQHALTEELGGIRFTISPRSFFQVNSGG 304

Query: 285 FDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
             I+   ++++  +    SV DLY G G I L LA     R V  +E+  E+ ++  ++ 
Sbjct: 305 ARIIYETVRQWSSLTGKESVVDLYCGIGGIALFLAGT--AREVHGIEV-VEAAVNDAESN 361

Query: 343 SRLPKSVDGNISWHNADNSIEPLSWLVGS----DVLVVDPPRKGLDSSLVHALQSIGSA 397
           +RL +    N S+   D + E +  LV      D++V++PPRKG D+ +++ + + G A
Sbjct: 362 ARLNRI--HNCSFEAGD-AAELIEELVEEGERLDLVVLNPPRKGCDAGVLNKVAAAGPA 417

Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q97LN4|Y523_CLOAB Uncharacterized RNA methyltransferase CA_C0523 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=CA_C0523 PE=3 SV=1

 Score =  108 bits (269), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 155/371 (41%), Gaps = 78/371 (21%)

Query: 54  CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL--------- 97
           C  ++ C GC       T +    +    ++  +  K IG LD +  S R+         
Sbjct: 77  CSIYKKCGGCQLQHLKYTEQLEFKK----NKVVECLKRIGKLDLS--SVRINETIGMEDP 130

Query: 98  YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
           Y +R + +L V  T+    IG Y+E +H ++++  C       N  + L+++ IKE N+E
Sbjct: 131 YFYRNKVQLPVGETAGEAKIGFYRERSHEIIEVDKCFIQDDSANEIILLIKRWIKEFNIE 190

Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
            Y+E    G LR++ +            + ++ G++ + LV N+ N   P+  +L  +  
Sbjct: 191 GYNEYSGKGTLRHIMI-----------RKAFKTGQIMLVLVTNTEN--VPHKKELIHMI- 236

Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
                    +    I  +  N      NVI G R   L GE+   + +G    +++  SF
Sbjct: 237 --------TTEIQGIKGIIQNINNKKTNVILGQREITLWGESTIEDYIGEFKFNISSKSF 288

Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
            Q N    + L     KY        V D Y G G I L L  ++  + V  VEI     
Sbjct: 289 FQVNPIQTEKLYSAALKYAGLTGKEVVFDAYCGTGTISLFL--SQNAKKVYGVEI----- 341

Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPR 380
                    +P++++ N   +   N IE   ++VG                +V+VVDPPR
Sbjct: 342 ---------IPEAIE-NAKINAKQNGIENTEFIVGKSEEEIPKLIEKGIAPEVVVVDPPR 391

Query: 381 KGLDSSLVHAL 391
           KG + SL+H++
Sbjct: 392 KGCEKSLLHSI 402

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q837V0|Y728_ENTFA Uncharacterized RNA methyltransferase EF_0728 OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=EF_0728 PE=3 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)

Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
           +R +A++ VR        G +++ +H+++ + H     P I+AA+  +R  +++ +V+PY
Sbjct: 130 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 189

Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
           +E D TG+LR++ +              Y  G++ + L+  +R  K  P S    D LE+
Sbjct: 190 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 236

Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
           + E +              S+  N      NVIFG+    L G     + +  +   ++ 
Sbjct: 237 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 282

Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
            SF Q N +  +++ +K+++Y     +  V D Y G G IGL+L  A+  + V  +E+ +
Sbjct: 283 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 340

Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
           E+            K  + N   +N +N+        E L  LV +    DV+VVDPPRK
Sbjct: 341 EA-----------VKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 389

Query: 382 GLDSSLVHAL 391
           GLD  LV+ L
Sbjct: 390 GLDGQLVNTL 399

Enterococcus faecalis (strain ATCC 700802 / V583) (taxid: 226185)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q891A0|Y2481_CLOTE Uncharacterized RNA methyltransferase CTC_02481 OS=Clostridium tetani (strain Massachusetts / E88) GN=CTC_02481 PE=3 SV=1

 Score =  105 bits (263), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 162/392 (41%), Gaps = 85/392 (21%)

Query: 33  PSSLPLDPPAANLPSLTCALQCPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSI 85
           PS+  ++PP            C  +  C GC         + N  R     +  D    +
Sbjct: 68  PSANRVEPP------------CDIYTKCGGCQLQHMSYKEQLNFKR----QKVKDALLRL 111

Query: 86  GLLDFTFDSC----RLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRIN 141
           G +D   +        Y +R + +L +        IG Y   +HN++D+  C     + +
Sbjct: 112 GGIDVEVEEVLGMENPYRYRNKVQLPIGKEKGKVNIGFYAPRSHNIIDLKSCFIQDEKAD 171

Query: 142 AAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNS 201
             +++L++ I++ NV  YDE +  G+LR++ +              +R G++ I LV  +
Sbjct: 172 KIIKILKEWIEKFNVSIYDEKEHKGNLRHIMVRTA-----------FRTGQIMIVLV--T 218

Query: 202 RNEKSPNSDKL-ESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETD 260
           +++K P+ ++L   L E L            + S+  N  +   NV+ G     L G+  
Sbjct: 219 KDKKLPHKEELINKLTEDL----------EGVVSIIQNMNSQKTNVVLGKESIVLWGKDK 268

Query: 261 FWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAA 318
             + +G    ++ P SF Q N    ++L  K  +Y        V D Y G G I L L  
Sbjct: 269 IIDYIGNFKFAITPLSFFQVNPIQTEVLYNKALEYADLKGDEVVFDAYCGTGTISLFL-- 326

Query: 319 ARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG-------- 370
           ++K + V  VEI           V+   +S   N   +N DN    + ++VG        
Sbjct: 327 SQKAKKVYGVEI-----------VNEAIESAKLNARENNVDN----VDFIVGESEQIIPE 371

Query: 371 -------SDVLVVDPPRKGLDSSLVHALQSIG 395
                  +DV+VVDPPRKG + SL+ A+  + 
Sbjct: 372 LIEKGIKADVVVVDPPRKGCEKSLLEAMAKMA 403

Clostridium tetani (strain Massachusetts / E88) (taxid: 212717)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9KEF5|Y897_BACHD Uncharacterized RNA methyltransferase BH0897 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=BH0897 PE=3 SV=1

 Score =  105 bits (261), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 149/363 (41%), Gaps = 58/363 (15%)

Query: 54  CPHFQSCSGC------------------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSC 95
           CP +  C GC                     F  H  +  D  T    +IG+ D      
Sbjct: 80  CPVYDQCGGCQLQHLSYEATLKEKREIVKQAFERHTTLRADTLT-ILPTIGMED------ 132

Query: 96  RLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
             + +R +++L ++        GLY   TH +VD+  C   H   N A E+++Q +++L 
Sbjct: 133 -PWAYRNKSQLQLKTEKGQVKAGLYVMNTHKLVDLSSCLVQHDATNEASEVVKQIVQDLQ 191

Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
           +  Y+E  RTG LR V   V            +  G++Q+ LV   ++   P  D L  +
Sbjct: 192 IPTYNERKRTGILRSVVSRVG-----------FETGELQVILVTTKKD--FPKKDLL--V 236

Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
            E        +SR  ++ S+  N      ++I G+    L GE    E +G I  SL+  
Sbjct: 237 EEI-------KSRLPHVKSLQQNINPKKTSLIMGDETISLFGEETIEETLGDISFSLSAR 289

Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
           +F Q N +    L  ++++         V D Y G G IGL LA   + R V+ +++  E
Sbjct: 290 AFFQLNPKQTVKLYNEVKRAAALTGKEKVIDAYCGVGTIGLWLAD--QAREVRGMDVIAE 347

Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHA 390
              + E       +    N+ +          SW+  S   DV+VVDPPR G D  L+  
Sbjct: 348 ---AIEDAKENAKRQGITNVQYEVGKAEKIIPSWVRSSWIPDVIVVDPPRTGCDDQLLKT 404

Query: 391 LQS 393
           ++ 
Sbjct: 405 IKQ 407

Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q73E18|Y542_BACC1 Uncharacterized RNA methyltransferase BCE_0542 OS=Bacillus cereus (strain ATCC 10987) GN=BCE_0542 PE=3 SV=1

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 159/358 (44%), Gaps = 47/358 (13%)

Query: 54  CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL---YGWRCR 103
           CP ++ C GC         + N  R I+V +A   + + GL +    +  +   + +R +
Sbjct: 80  CPVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFQKYMNNGLEEKIRPTLGMENPWHYRNK 138

Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
           ++L V       + GLY++ +H ++DI HC   H   N A +++R+ +++LNV  Y+E  
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKK 198

Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
           + G +R +  + AV T             G+VQ+TL+  +  E+ PN ++   +AE    
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV--- 238

Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
               + +   + S+  N      +VIFG++   L G+    E +G +   L+  +F Q N
Sbjct: 239 ----QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294

Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
                +L  + +K      +  + D Y G G IGL L  A     V+ +++  E+     
Sbjct: 295 PEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADAR 352

Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
           K   R   +   N  +           W+      DV+VVDPPR G D  L+  +  +
Sbjct: 353 KNAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407

Bacillus cereus (strain ATCC 10987) (taxid: 222523)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q81Z48|Y426_BACAN Uncharacterized RNA methyltransferase BA_0426/GBAA_0426/BAS0414 OS=Bacillus anthracis GN=BA_0426 PE=3 SV=1

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 154/357 (43%), Gaps = 45/357 (12%)

Query: 54  CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
           CP ++ C GC         + N  R I+V     + K+        T      + +R ++
Sbjct: 80  CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139

Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
           +L V       + GLY++ +H ++DI HC   H   N A +++R+ +++LNV  Y+E  +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199

Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
            G +R +  + AV T             G+VQ+TL+  +  E+ PN ++   +AE     
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238

Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
              + +   + S+  N      +VIFG++   L G+    E +G +   L+  +F Q N 
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295

Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
               +L  + +K      +  + D Y G G IGL L  A     V+ +++  E+     K
Sbjct: 296 EQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353

Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
              R   +   N  +           W+      DV+VVDPPR G D  L+  +  +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407

Bacillus anthracis (taxid: 1392)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O31503|RLMCD_BACSU 23S rRNA (uracil-C(5))-methyltransferase RlmCD OS=Bacillus subtilis (strain 168) GN=rlmCD PE=1 SV=1

 Score =  102 bits (255), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 155/355 (43%), Gaps = 46/355 (12%)

Query: 54  CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
           CP ++ C GC  +   +   ++    +  D  + IG LD        T      + +R +
Sbjct: 77  CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSKVTVHPTLGMEDPWNYRNK 136

Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
           A++ V       + G YQ+ +H+++D+  C     + + AV+ ++       V+ Y+E+ 
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEER 196

Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
             G LR++ +             RY     ++ +V+ +R    P+  K+  +  A+F   
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTSDFPHKAKIIEDITAQF--- 240

Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
                    ++ S+  N   +  NVIFGN    + GE   ++ +G +  +++  SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292

Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
                +L  K  +Y       +V D Y G G I L L  A++ + V  VEI  E+ +   
Sbjct: 293 PEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349

Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
           K  + L  + +   +   A+  I    W    + +D LVVDPPRKG D +L+  +
Sbjct: 350 KRNAELNGNTNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402

Catalyzes the formation of 5-methyl-uridine at positions 747 (m5U747) and 1939 (m5U1939) in 23S rRNA.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	457
255536931	518	conserved hypothetical protein [Ricinus	1.0	0.882	0.755	0.0
225451414	497	PREDICTED: uncharacterized RNA methyltra	0.964	0.887	0.748	0.0
449455868	519	PREDICTED: uncharacterized RNA methyltra	1.0	0.880	0.721	0.0
356560491	515	PREDICTED: uncharacterized RNA methyltra	0.914	0.811	0.755	0.0
42565237	518	S-adenosylmethionine-dependent methyltra	0.958	0.845	0.709	0.0
147845832	480	hypothetical protein VITISV_031112 [Viti	0.868	0.827	0.784	0.0
297818278	512	hypothetical protein ARALYDRAFT_904929 [	0.956	0.853	0.705	0.0
9294083	511	unnamed protein product [Arabidopsis tha	0.958	0.857	0.653	1e-179
449523365	414	PREDICTED: uncharacterized RNA methyltra	0.783	0.864	0.782	1e-164
357126538	540	PREDICTED: uncharacterized RNA methyltra	0.938	0.794	0.635	1e-161

>gi|255536931|ref|XP_002509532.1| conserved hypothetical protein [Ricinus communis] gi|223549431|gb|EEF50919.1| conserved hypothetical protein [Ricinus communis]

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/462 (75%), Positives = 394/462 (85%), Gaps = 5/462 (1%)

Query: 1   MPPCLLSARPPSPVITCRVSLGAVRN--PPPPAPPSSLPLDPPAANLPSLTCALQCPHFQ 58
           MPP LLS RP SP++TC  S    R+  PPPP PP     D     +P+LTC LQCPHFQ
Sbjct: 1   MPPFLLSFRPLSPLVTCHASTTVHRSLQPPPPKPPPLPLADLSTITVPTLTCVLQCPHFQ 60

Query: 59  SCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIG 118
           SCSGCT EFNLHRP+IV+EA+DFFK++G+ DFTFDS RL+GWRCRAKLAVRG+S  PLIG
Sbjct: 61  SCSGCTQEFNLHRPLIVNEASDFFKNLGISDFTFDSSRLWGWRCRAKLAVRGSSMQPLIG 120

Query: 119 LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTY 178
           LYQEGTHNVVDIPHCKAHHP INAAVELLRQGI ELN+EPYDED  TGDLRYVQMAVTTY
Sbjct: 121 LYQEGTHNVVDIPHCKAHHPSINAAVELLRQGITELNIEPYDEDQGTGDLRYVQMAVTTY 180

Query: 179 NTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWAN 238
           NTSLPASERY++G VQ+ LVWNSRNE SPN DKL +LA +LWRNGG R+   +IHS+WAN
Sbjct: 181 NTSLPASERYKHGIVQVALVWNSRNENSPNFDKLNALANYLWRNGGPRTAVRFIHSIWAN 240

Query: 239 FQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPY 298
           FQTSTNN+IFGNRWRHLLG+ DFWE VGGID+SLAPSSFGQANTRAFD LLRKLQKYVP 
Sbjct: 241 FQTSTNNIIFGNRWRHLLGDQDFWERVGGIDMSLAPSSFGQANTRAFDALLRKLQKYVPL 300

Query: 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA 358
           GASV DLYAGAGVIGLSLAA+RKCRSVKC+E+NK+S++SFEK   RLPKSVD +ISW+ A
Sbjct: 301 GASVADLYAGAGVIGLSLAASRKCRSVKCIEVNKQSKISFEKAAERLPKSVDSSISWYQA 360

Query: 359 DNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS--LSESSSSMVKEEK 416
           D S+EPLSWL+GS+V++VDPPRKGLD+SLV AL +I S ERK KS   S   +S VK+EK
Sbjct: 361 DTSVEPLSWLMGSEVVIVDPPRKGLDASLVDALLTISSLERKPKSSPASFGHNSKVKDEK 420

Query: 417 RPWILRAKEASVQIGSKTNSEN-QSLPQTLIYISCGWESFKE 457
           RPWILRA+EASV+IGSKT  E+ QSLPQTLIYISCGWESFKE
Sbjct: 421 RPWILRAREASVEIGSKTTLEDPQSLPQTLIYISCGWESFKE 462

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451414|ref|XP_002273563.1| PREDICTED: uncharacterized RNA methyltransferase pc1998 [Vitis vinifera] gi|296082357|emb|CBI21362.3| unnamed protein product [Vitis vinifera]

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/458 (74%), Positives = 385/458 (84%), Gaps = 17/458 (3%)

Query: 1   MPPCLLSARPPSPVITCRVSLGAVRNPPPPAPPSSLPLDPPAANLPSLTCALQCPHFQSC 60
           M   +LSA+P +P +             PP+P  +L L P    LPSLTCALQC HFQSC
Sbjct: 1   MTLSILSAQPSAPQLPASF---------PPSP--NLSLSP----LPSLTCALQCQHFQSC 45

Query: 61  SGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLY 120
           SGCT E NLHRPII+D+ TDFF + G+ DFTFDSCRL+GWRCRAKLAVRG+S SPLIGLY
Sbjct: 46  SGCTQELNLHRPIILDDVTDFFNNHGVSDFTFDSCRLWGWRCRAKLAVRGSSNSPLIGLY 105

Query: 121 QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNT 180
           QE +HN+VDIPHCKAHHP INA VELL+QGI  L VEPYDED  TG+LRYVQMAVT  NT
Sbjct: 106 QENSHNIVDIPHCKAHHPSINATVELLKQGITHLKVEPYDEDQGTGELRYVQMAVTLNNT 165

Query: 181 SLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQ 240
           SLPAS+RYRNGKVQ+TLVWNSRNE SP+S+KL++LA FLWRNGG RS  H IHSVWANFQ
Sbjct: 166 SLPASQRYRNGKVQVTLVWNSRNENSPSSEKLKALANFLWRNGGPRSNVHLIHSVWANFQ 225

Query: 241 TSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA 300
           TSTNN+IFGNRWRHLLGE DFWE+VGGIDI+LAPSSFGQANTRAFD LLRKLQKYVPYGA
Sbjct: 226 TSTNNIIFGNRWRHLLGEIDFWEHVGGIDIALAPSSFGQANTRAFDSLLRKLQKYVPYGA 285

Query: 301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN 360
           +V DLYAGAGVIGLSLAA RKCRSVKC+EINKE++LSFEKTV RLPKS+D  ISWH+AD 
Sbjct: 286 AVADLYAGAGVIGLSLAATRKCRSVKCIEINKEARLSFEKTVGRLPKSIDTTISWHHADT 345

Query: 361 SIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWI 420
           SI PLSWL+GSDV+VVDPPRKGLD SLV AL+++  AE++A  L+E S S VK EKRPWI
Sbjct: 346 SIGPLSWLMGSDVVVVDPPRKGLDPSLVDALRTLSLAEKRAM-LTERSFSKVKNEKRPWI 404

Query: 421 LRAKEASVQIGSKTN-SENQSLPQTLIYISCGWESFKE 457
           LRA+EASVQI SKT+  E QSLP+TLIYISCGWESFKE
Sbjct: 405 LRAREASVQIESKTSPEEGQSLPKTLIYISCGWESFKE 442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455868|ref|XP_004145672.1| PREDICTED: uncharacterized RNA methyltransferase pc1998-like [Cucumis sativus]

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/464 (72%), Positives = 389/464 (83%), Gaps = 7/464 (1%)

Query: 1   MPPCLLSARPPSPVITCRVSLGAVR--NPPPPAPPSSLPLDPPAANLP----SLTCALQC 54
           M  C  + RP +P +TC++S  ++R  +P  P P     L   A ++P    S  C+LQC
Sbjct: 1   MLHCHFTPRPITPFVTCQLSTSSLRIPSPSQPTPLPPPLLSLAAKSIPDSVSSPACSLQC 60

Query: 55  PHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTS 114
            HFQSCSGCTHEF+LHRP+IV+EAT FF  +G+LDFTFDSC+L+GWRCRAKLAVRG+S S
Sbjct: 61  THFQSCSGCTHEFDLHRPVIVEEATQFFNDLGVLDFTFDSCKLWGWRCRAKLAVRGSSIS 120

Query: 115 PLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMA 174
           P+IGLYQEGTHNVVDIP CKAHHP INAAVELL++GI E ++EPYDED  TGDLRYVQ+A
Sbjct: 121 PMIGLYQEGTHNVVDIPDCKAHHPNINAAVELLKRGITEFDIEPYDEDQGTGDLRYVQLA 180

Query: 175 VTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHS 234
           VTTY+TSLP+SERY+NGK+QI LVWNSRNE S NSDKL +LA FLW+NGG RS  H +HS
Sbjct: 181 VTTYSTSLPSSERYKNGKIQIALVWNSRNETSQNSDKLNALANFLWKNGGVRSNTHLVHS 240

Query: 235 VWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQK 294
           VWANFQTSTNNVIFGNRWRHLLGE DFWE+VGGIDI L PSSFGQANT+AFD LLRKLQK
Sbjct: 241 VWANFQTSTNNVIFGNRWRHLLGERDFWEHVGGIDICLTPSSFGQANTQAFDSLLRKLQK 300

Query: 295 YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNIS 354
           YVPYGASV DLYAGAGVIGLSLAA RKCRSVKCVE+NKES+LSFEKTV RLP  V+ +IS
Sbjct: 301 YVPYGASVADLYAGAGVIGLSLAATRKCRSVKCVEVNKESKLSFEKTVERLPDRVNSSIS 360

Query: 355 WHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKE 414
           WH+AD S EPLSW++GSDV+VVDPPRKGLD+SL + L+ I S +RK K LS+    ++K+
Sbjct: 361 WHHADTSKEPLSWIMGSDVVVVDPPRKGLDASLANMLRDISSFKRKVKLLSKRLDLLLKD 420

Query: 415 EKRPWILRAKEASVQIGSKTNSE-NQSLPQTLIYISCGWESFKE 457
           EKRPW+LRA+E +VQIGS T+SE NQSLPQTLIYISCGWESFKE
Sbjct: 421 EKRPWVLRAREETVQIGSTTDSEPNQSLPQTLIYISCGWESFKE 464

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560491|ref|XP_003548525.1| PREDICTED: uncharacterized RNA methyltransferase pc1998-like [Glycine max]

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/425 (75%), Positives = 369/425 (86%), Gaps = 7/425 (1%)

Query: 34  SSLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFD 93
           SS+P  PP      LTCAL CPHFQSCSGCTHEFNLHRP+I+D+AT+FF+  G+ DFTFD
Sbjct: 40  SSIPQSPP------LTCALHCPHFQSCSGCTHEFNLHRPVILDDATNFFRKHGVSDFTFD 93

Query: 94  SCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKE 153
           +C+L+GWRCRAKLAVRG+ST PLIGLY+EGTHNVVDIP C+AHHP INAAVELLR+GI E
Sbjct: 94  TCKLWGWRCRAKLAVRGSSTEPLIGLYEEGTHNVVDIPQCQAHHPNINAAVELLRRGIIE 153

Query: 154 LNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLE 213
           + VEPY ED+ TGDLRYVQMAVTTYNTSLPA++RY+NGKVQ+TLVWNSRNE SP SDKL 
Sbjct: 154 IGVEPYIEDEGTGDLRYVQMAVTTYNTSLPAAQRYKNGKVQVTLVWNSRNENSPGSDKLN 213

Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
           +LA FLW+NGG RSR H IHSVWANFQTSTNN+IFGN+WRHLLGE DFWE+VGGID+SLA
Sbjct: 214 ALANFLWKNGGQRSRLHLIHSVWANFQTSTNNIIFGNKWRHLLGERDFWEHVGGIDVSLA 273

Query: 274 PSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
           PSSFGQANTRAFD LLR+LQKYVPY + V DLYAGAGVIGLSLAA RKCRS+KC+EINKE
Sbjct: 274 PSSFGQANTRAFDALLRRLQKYVPYESDVADLYAGAGVIGLSLAATRKCRSIKCIEINKE 333

Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQS 393
           S+ SFEKT+ RLP +VD +I+WH+AD S EP  WL+GSDV+V+DPPRKGLD+SL+ AL++
Sbjct: 334 SKASFEKTIERLPATVDSSITWHHADASKEPFLWLLGSDVVVIDPPRKGLDASLIDALKN 393

Query: 394 IGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSE-NQSLPQTLIYISCGW 452
           I S ERKA S S   S+  +EEKRPW+LRAKE SVQIGSK  +   QS+PQTLIYISCGW
Sbjct: 394 ISSVERKAFSSSGRFSNSSQEEKRPWVLRAKEDSVQIGSKPPTNIAQSVPQTLIYISCGW 453

Query: 453 ESFKE 457
           ESFKE
Sbjct: 454 ESFKE 458

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565237|ref|NP_189354.2| S-adenosylmethionine-dependent methyltransferase-domain containing protein [Arabidopsis thaliana] gi|190341123|gb|ACE74720.1| At3g27180 [Arabidopsis thaliana] gi|332643755|gb|AEE77276.1| S-adenosylmethionine-dependent methyltransferase-domain containing protein [Arabidopsis thaliana]

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/447 (70%), Positives = 376/447 (84%), Gaps = 9/447 (2%)

Query: 13  PVITCRVSLGAVRNPPPPAP-PSSLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLHR 71
           P+I CRVS       P  AP  +S+PL PP+ +  SL C+LQCPHFQSCSGCT EFNLHR
Sbjct: 15  PIINCRVS------APASAPFVASVPL-PPSTSSDSLACSLQCPHFQSCSGCTQEFNLHR 67

Query: 72  PIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIP 131
           P +VDEA+DFFK  G+ DFTFDSCRL+GWRCRAKLAVRG+S + LIGLYQEGTH VVDIP
Sbjct: 68  PAVVDEASDFFKRYGVDDFTFDSCRLWGWRCRAKLAVRGSSDNALIGLYQEGTHTVVDIP 127

Query: 132 HCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNG 191
            CK+HHP INAA+ELLR+GIK  +V P+DED  TGDLRYVQMAVTT++T+L A ERY+NG
Sbjct: 128 ECKSHHPNINAAIELLREGIKVFDVVPFDEDQGTGDLRYVQMAVTTHSTNLRAPERYKNG 187

Query: 192 KVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNR 251
           KVQ++LVWNSRNE+S N+DKL++L+ +LWR GG  S+ H IHSVWANFQTSTNN+IFGNR
Sbjct: 188 KVQVSLVWNSRNERSHNADKLQALSTYLWRKGGPNSKFHLIHSVWANFQTSTNNIIFGNR 247

Query: 252 WRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGV 311
           WRHLLGE DFWE+VGGIDISL PSSFGQANTRAFD LL KL KYVP G+SV DLYAGAGV
Sbjct: 248 WRHLLGERDFWEHVGGIDISLDPSSFGQANTRAFDSLLWKLHKYVPGGSSVADLYAGAGV 307

Query: 312 IGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS 371
           IGLSLA +RKC SVKC+E+NKE++LSFEKT+ RLP S++ +ISWH+AD S+ PLSW++GS
Sbjct: 308 IGLSLATSRKCSSVKCIEVNKEARLSFEKTIQRLPNSLNCSISWHHADASVNPLSWIIGS 367

Query: 372 DVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIG 431
           DV+VVDPPR+GLD+SL   L+S+ S E++ +S S+SSS   KEEKRPWILRAKE S+Q G
Sbjct: 368 DVVVVDPPRRGLDASLRQMLESVPSIEKRMRSSSQSSSLNAKEEKRPWILRAKELSIQAG 427

Query: 432 SK-TNSENQSLPQTLIYISCGWESFKE 457
           +K T+ EN +LPQ LIYISCGWESFKE
Sbjct: 428 NKQTSEENNTLPQRLIYISCGWESFKE 454

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147845832|emb|CAN82187.1| hypothetical protein VITISV_031112 [Vitis vinifera]

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/404 (78%), Positives = 351/404 (86%), Gaps = 7/404 (1%)

Query: 60  CSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGL 119
           CSGCT E NLHRPII+D+ TDFF + G+ DFTFDSCRL+GWRCRAKLAVRG+S SPLIGL
Sbjct: 5   CSGCTQELNLHRPIILDDVTDFFNNHGVSDFTFDSCRLWGWRCRAKLAVRGSSNSPLIGL 64

Query: 120 YQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYN 179
           YQE +HN+VDIPHCKAHHP INA VELL+QGI  L VEPYDED  TG+LRYVQMAVT  N
Sbjct: 65  YQENSHNIVDIPHCKAHHPSINATVELLKQGITHLKVEPYDEDQGTGELRYVQMAVTXNN 124

Query: 180 TSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANF 239
           TSLPAS+RYRNGKVQ+TLVWNSRNE SP+S+KL++LA FLWRNGG RS  H IHSVWANF
Sbjct: 125 TSLPASQRYRNGKVQVTLVWNSRNENSPSSEKLKALANFLWRNGGPRSNVHLIHSVWANF 184

Query: 240 QTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYG 299
           QTSTNN+IFGNRWRHLLGE DFWE+VGGIDI+LAPSSFGQANTRAFD LLRKLQKYVPYG
Sbjct: 185 QTSTNNIIFGNRWRHLLGEIDFWEHVGGIDIALAPSSFGQANTRAFDSLLRKLQKYVPYG 244

Query: 300 ASVTDLYAGAGVIGLSLAAARKCR-----SVKCVEINKESQLSFEKTVSRLPKSVDGNIS 354
           A+V DLYAGAGVIGLSLAA RKCR     SVKC+EINKE++LSFEKTV RLPKS+D  IS
Sbjct: 245 AAVADLYAGAGVIGLSLAATRKCRQELRWSVKCIEINKEARLSFEKTVGRLPKSIDXTIS 304

Query: 355 WHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKE 414
           WH+AD SI PLSWL GSDV+VVDPPRKGLD SLV AL+++  AE++A  L+E S S VK 
Sbjct: 305 WHHADTSIGPLSWLXGSDVVVVDPPRKGLDPSLVDALRTLSLAEKRAM-LTERSFSKVKN 363

Query: 415 EKRPWILRAKEASVQIGSKTN-SENQSLPQTLIYISCGWESFKE 457
           EKRPWILRA EASVQI SKT+  E QSLP+TLIYISCGWESFKE
Sbjct: 364 EKRPWILRAXEASVQIESKTSPEEGQSLPKTLIYISCGWESFKE 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818278|ref|XP_002877022.1| hypothetical protein ARALYDRAFT_904929 [Arabidopsis lyrata subsp. lyrata] gi|297322860|gb|EFH53281.1| hypothetical protein ARALYDRAFT_904929 [Arabidopsis lyrata subsp. lyrata]

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/448 (70%), Positives = 375/448 (83%), Gaps = 11/448 (2%)

Query: 13  PVITCRVSLGAVRNPPPPAPPS--SLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLH 70
           P+ITCRVS        PP+ P+  +    PP+++  SL C+LQCPHFQSCSGCT EFNLH
Sbjct: 14  PIITCRVS--------PPSSPTFVASVPLPPSSSSDSLACSLQCPHFQSCSGCTQEFNLH 65

Query: 71  RPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDI 130
           RP +VDEA+ FFK  G+ DFTFDSCRL+GWRCRAKLAVRG+S + LIGLYQEGTH VVDI
Sbjct: 66  RPAVVDEASGFFKRYGVEDFTFDSCRLWGWRCRAKLAVRGSSDNALIGLYQEGTHTVVDI 125

Query: 131 PHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRN 190
           P CK+HHP INAA+ELLR+GIK  +V P+DED  TGDLRYVQMAVTT++T+L A ERY+N
Sbjct: 126 PECKSHHPNINAAIELLREGIKVFDVVPFDEDQGTGDLRYVQMAVTTHSTNLRAPERYKN 185

Query: 191 GKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGN 250
           GKVQ++LVWNSRNE+S N+DKL++L+ +LWR GG  S+ H IHSVWANFQTSTNN+IFGN
Sbjct: 186 GKVQVSLVWNSRNERSHNADKLQALSSYLWRKGGPNSKFHLIHSVWANFQTSTNNIIFGN 245

Query: 251 RWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAG 310
           RWRHLLGE DFWE+VGGIDISL PSSFGQANTRAFD LL KL KYVP G+SV DLYAGAG
Sbjct: 246 RWRHLLGERDFWEHVGGIDISLDPSSFGQANTRAFDSLLWKLHKYVPGGSSVADLYAGAG 305

Query: 311 VIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG 370
           VIGLSLA +RKC SVKC+E+NKE++LSFEKT+ RLP SVD +ISWH+AD S+ PLSW++G
Sbjct: 306 VIGLSLATSRKCSSVKCIEVNKEARLSFEKTIQRLPNSVDCSISWHHADASVNPLSWIIG 365

Query: 371 SDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQI 430
           SDV+VVDPPR+GLD+SL   L+S+ S E++ +S S+SSS+  KEEKRPWILRAKE S+Q 
Sbjct: 366 SDVVVVDPPRRGLDASLRQMLESVPSIEKRMRSSSQSSSTNAKEEKRPWILRAKELSIQA 425

Query: 431 GSK-TNSENQSLPQTLIYISCGWESFKE 457
           G+K T  EN +LPQ LIYISCGWESFKE
Sbjct: 426 GNKLTPEENNTLPQRLIYISCGWESFKE 453

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294083|dbj|BAB01935.1| unnamed protein product [Arabidopsis thaliana]

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 319/488 (65%), Positives = 377/488 (77%), Gaps = 50/488 (10%)

Query: 13  PVITCRVSLGAVRNPPPPAP-PSSLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLHR 71
           P+I CRVS       P  AP  +S+PL PP+ +  SL C+LQCPHFQSCSGCT EFNLHR
Sbjct: 14  PIINCRVS------APASAPFVASVPL-PPSTSSDSLACSLQCPHFQSCSGCTQEFNLHR 66

Query: 72  PIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIP 131
           P +VDEA+DFFK  G+ DFTFDSCRL+GWRCRAKLAVRG+S + LIGLYQEGTH VVDIP
Sbjct: 67  PAVVDEASDFFKRYGVDDFTFDSCRLWGWRCRAKLAVRGSSDNALIGLYQEGTHTVVDIP 126

Query: 132 HCK------AHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPAS 185
            CK      AHHP INAA+ELLR+GIK  +V P+DED  TGDLRYVQMAVTT++T+L A 
Sbjct: 127 ECKCNFDCAAHHPNINAAIELLREGIKVFDVVPFDEDQGTGDLRYVQMAVTTHSTNLRAP 186

Query: 186 ERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNN 245
           ERY+NGKVQ++LVWNSRNE+S N+DKL++L+ +LWR GG  S+ H IHSVWANFQTSTNN
Sbjct: 187 ERYKNGKVQVSLVWNSRNERSHNADKLQALSTYLWRKGGPNSKFHLIHSVWANFQTSTNN 246

Query: 246 VIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDL 305
           +IFGNRWRHLLGE DFWE+VGGIDISL PSSFGQANTRAFD LL KL KYVP G+SV DL
Sbjct: 247 IIFGNRWRHLLGERDFWEHVGGIDISLDPSSFGQANTRAFDSLLWKLHKYVPGGSSVADL 306

Query: 306 YAGAGVIGLSLAAARKCR-----------------------------------SVKCVEI 330
           YAGAGVIGLSLA +RKCR                                   SVKC+E+
Sbjct: 307 YAGAGVIGLSLATSRKCRQEQRLFTSVLNLKRLYMFILMKRLTQYFILKSDFSSVKCIEV 366

Query: 331 NKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHA 390
           NKE++LSFEKT+ RLP S++ +ISWH+AD S+ PLSW++GSDV+VVDPPR+GLD+SL   
Sbjct: 367 NKEARLSFEKTIQRLPNSLNCSISWHHADASVNPLSWIIGSDVVVVDPPRRGLDASLRQM 426

Query: 391 LQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSK-TNSENQSLPQTLIYIS 449
           L+S+ S E++ +S S+SSS   KEEKRPWILRAKE S+Q G+K T+ EN +LPQ LIYIS
Sbjct: 427 LESVPSIEKRMRSSSQSSSLNAKEEKRPWILRAKELSIQAGNKQTSEENNTLPQRLIYIS 486

Query: 450 CGWESFKE 457
           CGWESFKE
Sbjct: 487 CGWESFKE 494

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523365|ref|XP_004168694.1| PREDICTED: uncharacterized RNA methyltransferase pc1998-like, partial [Cucumis sativus]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 281/359 (78%), Positives = 317/359 (88%), Gaps = 1/359 (0%)

Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
           WRCRAKLAVRG+S SP+IGLYQEGTHNVVDIP CKAHHP INAAVELL++GI E ++EPY
Sbjct: 1   WRCRAKLAVRGSSISPMIGLYQEGTHNVVDIPDCKAHHPNINAAVELLKRGITEFDIEPY 60

Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
           DED  TGDLRYVQ+AVTTY+TSLP+SERY+NGK+QI LVWNSRNE S NSDKL +LA FL
Sbjct: 61  DEDQGTGDLRYVQLAVTTYSTSLPSSERYKNGKIQIALVWNSRNETSQNSDKLNALANFL 120

Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
           W+NGG RS  H +HSVWANFQTSTNNVIFGNRWRHLLGE DFWE+VGGIDI L PSSFGQ
Sbjct: 121 WKNGGVRSNTHLVHSVWANFQTSTNNVIFGNRWRHLLGERDFWEHVGGIDICLTPSSFGQ 180

Query: 280 ANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
           ANT+AFD LLRKLQKYVPYGASV DLYAGAGVIGLSLAA RKCRSVKCVE+NKES+LSFE
Sbjct: 181 ANTQAFDSLLRKLQKYVPYGASVADLYAGAGVIGLSLAATRKCRSVKCVEVNKESKLSFE 240

Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAER 399
           KTV RLP  V+ +ISWH+AD S EPLSW++GSDV+VVDPPRKGLD+SL + L+ I S +R
Sbjct: 241 KTVERLPDRVNSSISWHHADTSKEPLSWIMGSDVVVVDPPRKGLDASLANMLRDISSFKR 300

Query: 400 KAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSE-NQSLPQTLIYISCGWESFKE 457
           K K LS+    ++K+EKRPW+LRA+E +VQIGS T+SE NQSLPQTLIYISCGWESFKE
Sbjct: 301 KVKLLSKRLDLLLKDEKRPWVLRAREETVQIGSTTDSEPNQSLPQTLIYISCGWESFKE 359

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126538|ref|XP_003564944.1| PREDICTED: uncharacterized RNA methyltransferase pc1998-like [Brachypodium distachyon]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 276/434 (63%), Positives = 339/434 (78%), Gaps = 5/434 (1%)

Query: 27  PPPPAPPSSLPLDPPAANL--PSLTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKS 84
           P  P P +SLPL P   +   P+ TC L C HF SCSGCTHEF+L +P ++ E  DFFK 
Sbjct: 53  PTAPKPATSLPLPPTIVSTTDPASTC-LGCVHFGSCSGCTHEFDLDKPPVLQEVADFFKG 111

Query: 85  IGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAV 144
            G+ DFTF   RL  WRCRAKLAVRGT   PLIGLYQEGTHNV DIP C+AHHP INAA+
Sbjct: 112 HGVEDFTFSRGRLSEWRCRAKLAVRGTPERPLIGLYQEGTHNVQDIPECRAHHPSINAAI 171

Query: 145 ELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNE 204
           +LL+QGI ELNV+P+DED  TG+LRYVQM VTTYNTS+P ++RY   +VQ++LVWNSR+E
Sbjct: 172 KLLKQGISELNVQPFDEDAGTGELRYVQMTVTTYNTSIPVAKRYGQARVQVSLVWNSRDE 231

Query: 205 KSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWEN 264
           +S NS+KL  L EFLWR GG RS  H IHS+WANFQTST+N+IFG++WRHL+GE D WE 
Sbjct: 232 RSKNSEKLSLLQEFLWRTGGPRSNMHVIHSIWANFQTSTSNIIFGHKWRHLVGEADLWER 291

Query: 265 VGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRS 324
            GG+DISL P SFGQANT +F+ LL KL KYVP G++V DLY+GAGVIGLS+AA+RKCRS
Sbjct: 292 FGGVDISLDPYSFGQANTLSFNSLLHKLLKYVPRGSTVVDLYSGAGVIGLSIAASRKCRS 351

Query: 325 VKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLD 384
           VKCVEINK S+LSFEK+ SRLP ++   I+WHN D S+EP+ WL GS V +VDPPRKGL 
Sbjct: 352 VKCVEINKMSKLSFEKSASRLPTNLGCTITWHNTDASVEPVHWLEGSSVAIVDPPRKGLH 411

Query: 385 SSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSENQ-SLPQ 443
            S+++ALQ +  +ERKA   ++SS + VK+EKRPWILRA+EA+V + +    E+  + P+
Sbjct: 412 PSVINALQRVALSERKAYK-AKSSLTKVKDEKRPWILRAREAAVHVDNTDMEESSGTWPE 470

Query: 444 TLIYISCGWESFKE 457
           TLIYISCGWESFK+
Sbjct: 471 TLIYISCGWESFKK 484

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	457
TAIR|locus:2095128	518	AT3G27180 [Arabidopsis thalian	0.960	0.847	0.665	9e-164
TIGR_CMR|GSU_1452	495	GSU_1452 "RNA methyltransferas	0.266	0.246	0.310	1.9e-20
TIGR_CMR|BA_0426	459	BA_0426 "RNA methyltransferase	0.317	0.315	0.269	2.8e-18
UNIPROTKB|O31503	459	rlmCD "23S rRNA (uracil-C(5))-	0.341	0.339	0.301	8.1e-17
TIGR_CMR|BA_0333	458	BA_0333 "RNA methyltransferase	0.417	0.417	0.283	4.2e-14
UNIPROTKB|Q8U1N4	411	PF1172 "tRNA (uracil(54)-C(5))	0.334	0.372	0.253	9e-13
UNIPROTKB|O58994	412	PH1259 "23S rRNA (uracil(747)-	0.260	0.288	0.356	2e-12
UNIPROTKB|Q9UZK1	410	PYRAB11450 "23S rRNA (uracil(7	0.242	0.270	0.355	6.6e-11
UNIPROTKB|Q8U2K7	409	PF0827 "23S rRNA (uracil(747)-	0.256	0.286	0.361	3.2e-10
UNIPROTKB|F1RHM9	620	TRMT2A "Uncharacterized protei	0.557	0.411	0.256	2e-09

TAIR|locus:2095128 AT3G27180 [Arabidopsis thaliana (taxid:3702)]

 Score = 1594 (566.2 bits), Expect = 9.0e-164, P = 9.0e-164
 Identities = 297/446 (66%), Positives = 348/446 (78%)

Query:    13 PVITCRVSLGAVRNXXXXXXXXXXXXXXXXXXXXXXTCALQCPHFQSCSGCTHEFNLHRP 72
             P+I CRVS  A                          C+LQCPHFQSCSGCT EFNLHRP
Sbjct:    15 PIINCRVSAPA------SAPFVASVPLPPSTSSDSLACSLQCPHFQSCSGCTQEFNLHRP 68

Query:    73 IIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPH 132
              +VDEA+DFFK  G+ DFTFDSCRL+GWRCRAKLAVRG+S + LIGLYQEGTH VVDIP 
Sbjct:    69 AVVDEASDFFKRYGVDDFTFDSCRLWGWRCRAKLAVRGSSDNALIGLYQEGTHTVVDIPE 128

Query:   133 CKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGK 192
             CK+HHP INAA+ELLR+GIK  +V P+DED  TGDLRYVQMAVTT++T+L A ERY+NGK
Sbjct:   129 CKSHHPNINAAIELLREGIKVFDVVPFDEDQGTGDLRYVQMAVTTHSTNLRAPERYKNGK 188

Query:   193 VQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRW 252
             VQ++LVWNSRNE+S N+DKL++L+ +LWR GG  S+ H IHSVWANFQTSTNN+IFGNRW
Sbjct:   189 VQVSLVWNSRNERSHNADKLQALSTYLWRKGGPNSKFHLIHSVWANFQTSTNNIIFGNRW 248

Query:   253 RHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVI 312
             RHLLGE DFWE+VGGIDISL PSSFGQANTRAFD LL KL KYVP G+SV DLYAGAGVI
Sbjct:   249 RHLLGERDFWEHVGGIDISLDPSSFGQANTRAFDSLLWKLHKYVPGGSSVADLYAGAGVI 308

Query:   313 GLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSD 372
             GLSLA +RKC SVKC+E+NKE++LSFEKT+ RLP S++ +ISWH+AD S+ PLSW++GSD
Sbjct:   309 GLSLATSRKCSSVKCIEVNKEARLSFEKTIQRLPNSLNCSISWHHADASVNPLSWIIGSD 368

Query:   373 VLVVDPPRKGLDSSLVHALQSIGXXXXXXXXXXXXXXXXXXXXXRPWILRAKEASVQIGS 432
             V+VVDPPR+GLD+SL   L+S+                      RPWILRAKE S+Q G+
Sbjct:   369 VVVVDPPRRGLDASLRQMLESVPSIEKRMRSSSQSSSLNAKEEKRPWILRAKELSIQAGN 428

Query:   433 K-TNSENQSLPQTLIYISCGWESFKE 457
             K T+ EN +LPQ LIYISCGWESFKE
Sbjct:   429 KQTSEENNTLPQRLIYISCGWESFKE 454

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0031167 "rRNA methylation" evidence=IEA

TIGR_CMR|GSU_1452 GSU_1452 "RNA methyltransferase, TrmA family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 162 (62.1 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
 Identities = 41/132 (31%), Positives = 66/132 (50%)

Query:    54 CPHFQSCSGCTHEFNLHRPIIVDEATDF-------FKSIGLLDF--TFDSCRLYGWRCRA 104
             C    SC GC     +H P  ++    F       ++++G  +   T  S     +R  A
Sbjct:    88 CKRAGSCDGCPL-IVMHYPDQLNWKRTFTERQIRRYQTLGAAEVLATLPSPNQLHYRNSA 146

Query:   105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
             KL V GT   P+IG+Y+  +H V+DI  C  HHP IN  V  +++GI +  V+ Y+    
Sbjct:   147 KLVVSGTFRRPVIGIYRRNSHQVMDIGTCPLHHPLINRVVTAVKEGIAKCKVQVYNPRTG 206

Query:   165 TGDLRYVQMAVT 176
             +G LRY+ + ++
Sbjct:   207 SGLLRYLVVRIS 218

GO:0001510 "RNA methylation" evidence=ISS

GO:0006400 "tRNA modification" evidence=ISS

GO:0008175 "tRNA methyltransferase activity" evidence=ISS

TIGR_CMR|BA_0426 BA_0426 "RNA methyltransferase, TrmA family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 153 (58.9 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 45/167 (26%), Positives = 84/167 (50%)

Query:    54 CPHFQSCSGCT--H-----EFNLHRPIIVDEATDFFKSI--GLLDFTFDSCRLYGWRCRA 104
             CP ++ C GC   H     + N  R I+V     + K+     +  T      + +R ++
Sbjct:    80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139

Query:   105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
             +L V       + GLY++ +H ++DI HC   H   N A +++R+ +++LNV  Y+E  +
Sbjct:   140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199

Query:   165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDK 211
              G +R +   VT   T++      + G+VQ+TL+  +  E+ PN ++
Sbjct:   200 KGLVRTI---VT--RTAV------QTGEVQVTLI--TTKEELPNKEQ 233

GO:0006400 "tRNA modification" evidence=ISS

GO:0008175 "tRNA methyltransferase activity" evidence=ISS

UNIPROTKB|O31503 rlmCD "23S rRNA (uracil-C(5))-methyltransferase RlmCD" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 172 (65.6 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
 Identities = 50/166 (30%), Positives = 80/166 (48%)

Query:   231 YIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLR 290
             ++ S+  N   +  NVIFGN    + GE   ++ +G +  +++  SF Q N     +L  
Sbjct:   242 HVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYD 301

Query:   291 KLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS 348
             K  +Y       +V D Y G G I L LA  ++ + V  VEI  E+ +   K  + L  +
Sbjct:   302 KALEYAELQGEETVIDAYCGIGTISLFLA--KQAKKVYGVEIVPEA-IEDAKRNAELNGN 358

Query:   349 VDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
              +   +   A+  I P  W    + +D LVVDPPRKG D +L+  +
Sbjct:   359 TNAEFAVGEAETVI-P-KWYEEGITADTLVVDPPRKGCDEALLRTI 402

GO:0031167 "rRNA methylation" evidence=IDA

GO:0070041 "rRNA (uridine-C5-)-methyltransferase activity" evidence=IDA

TIGR_CMR|BA_0333 BA_0333 "RNA methyltransferase, TrmA family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 161 (61.7 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
 Identities = 59/208 (28%), Positives = 98/208 (47%)

Query:   189 RNGKV--QITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGSRSREHYIHSVWANFQTSTNN 245
             R G+V  +I LV+ +R  + PN   + E +A        ++  E  + S+  N      N
Sbjct:   207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIA--------AKFPE--VKSIVQNVNPKRTN 256

Query:   246 VIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDL 305
             VIFG++   L G    ++ +G I  +++  SF Q N     +L  K  +Y     + T +
Sbjct:   257 VIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVI 316

Query:   306 YAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL 365
              A  G+  +SL  A+K + V  VEI  E+ +   K  + L    +       A+  I P 
Sbjct:   317 DAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKRNAALNNMTNAEFGVGEAEVVI-PK 374

Query:   366 SWLVG--SDVLVVDPPRKGLDSSLVHAL 391
              +  G  +D +VVDPPRKG D +L++ +
Sbjct:   375 WYKEGVIADTMVVDPPRKGCDEALLNTI 402

GO:0008175 "tRNA methyltransferase activity" evidence=ISS

GO:0009451 "RNA modification" evidence=ISS

UNIPROTKB|Q8U1N4 PF1172 "tRNA (uracil(54)-C(5))-methyltransferase" [Pyrococcus furiosus DSM 3638 (taxid:186497)]

 Score = 131 (51.2 bits), Expect = 9.0e-13, Sum P(3) = 9.0e-13
 Identities = 42/166 (25%), Positives = 80/166 (48%)

Query:   231 YIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLR 290
             +  S++ +   S ++V +G+  ++  G+    E + G+   + P+SF Q N+     L++
Sbjct:   207 FADSIYWSINRSKSDVSYGDIEKYW-GKEFIMEELDGVKYLIHPNSFFQTNSYQAVNLVK 265

Query:   291 KLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP-KSV 349
              ++K+V  G  V D+Y+G G  G+ LA     + +K V  +  +  + E         +V
Sbjct:   266 TVEKFVE-GEKVVDMYSGVGTFGVYLAK----KGMKVVGFDSNA-FAIEMANKNAEINNV 319

Query:   350 DGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIG 395
             +    +  +D  ++    + G D ++VDPPR GL   LV  L   G
Sbjct:   320 EAEF-FVASDREVD----IKGFDTVIVDPPRAGLHPKLVKRLNDHG 360

GO:0030488 "tRNA methylation" evidence=ISS

GO:0030697 "S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity" evidence=ISS

UNIPROTKB|O58994 PH1259 "23S rRNA (uracil(747)-C(5))-methyltransferase" [Pyrococcus horikoshii OT3 (taxid:70601)]

 Score = 149 (57.5 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
 Identities = 46/129 (35%), Positives = 69/129 (53%)

Query:   255 LLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGL 314
             +LG     E V GI   + PS F Q N+ A  +LL+ ++K+   G+ V DLY+G G   L
Sbjct:   231 VLGNEVIREKVEGITYLIHPSVFFQTNSYALPLLLKSVEKFCE-GSKVLDLYSGIGT--L 287

Query:   315 SLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVL 374
             SL  A++   V  VE+N  S +   K  + +  S++       A+++ E    L G + L
Sbjct:   288 SLYLAKRGFEVTGVEVNGTS-VEMAKRSAEI-NSINATFIQGKAEDA-E----LEGYETL 340

Query:   375 VVDPPRKGL 383
             +VDPPRKGL
Sbjct:   341 IVDPPRKGL 349

GO:0031167 "rRNA methylation" evidence=ISS

GO:0070041 "rRNA (uridine-C5-)-methyltransferase activity" evidence=ISS

UNIPROTKB|Q9UZK1 PYRAB11450 "23S rRNA (uracil(747)-C(5))-methyltransferase" [Pyrococcus abyssi GE5 (taxid:272844)]

 Score = 148 (57.2 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
 Identities = 43/121 (35%), Positives = 67/121 (55%)

Query:   263 ENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKC 322
             E++ G+   + PS+F Q N+ A  ILL+ ++ +   G+ V DLY+G G   L LA  +K 
Sbjct:   237 ESIEGLVYLIHPSTFFQTNSYALPILLKAVESFAE-GSKVLDLYSGVGTFSLYLA--KKG 293

Query:   323 RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKG 382
               V  VE+N+ES    +K+      S+D +     A+++      L G + L+VDPPRKG
Sbjct:   294 FEVTGVEVNEESVRVAKKSAE--VNSLDVSFIPGRAEDAK-----LKGYETLIVDPPRKG 346

Query:   383 L 383
             L
Sbjct:   347 L 347

GO:0031167 "rRNA methylation" evidence=IDA

GO:0070041 "rRNA (uridine-C5-)-methyltransferase activity" evidence=IDA

UNIPROTKB|Q8U2K7 PF0827 "23S rRNA (uracil(747)-C(5))-methyltransferase" [Pyrococcus furiosus DSM 3638 (taxid:186497)]

 Score = 143 (55.4 bits), Expect = 3.2e-10, Sum P(3) = 3.2e-10
 Identities = 47/130 (36%), Positives = 69/130 (53%)

Query:   256 LGETDFW-ENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGL 314
             LGE +F  E + GI   L P  F Q N+ A  +LL+ ++ ++  G+ V DLY+G G   L
Sbjct:   227 LGEKEFISEKIFGIKYLLRPGIFFQTNSYALPLLLKAVEGFLD-GSKVLDLYSGIGTFSL 285

Query:   315 SLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN-SIEPLSWLVGSDV 373
              L   +K  +V  VEINK + +   K  + L  S++       A+  +IE      G D 
Sbjct:   286 YLT--KKGFNVVGVEINKTA-VEVAKLSAEL-NSLNVEFKAKRAEEENIE------GYDA 335

Query:   374 LVVDPPRKGL 383
             L++DPPRKGL
Sbjct:   336 LILDPPRKGL 345

GO:0031167 "rRNA methylation" evidence=ISS

GO:0070041 "rRNA (uridine-C5-)-methyltransferase activity" evidence=ISS

UNIPROTKB|F1RHM9 TRMT2A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 169 (64.5 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 73/285 (25%), Positives = 131/285 (45%)

Query:   117 IGLYQEGTHNVVDIPHCKAHHPRINA-AVELLRQGIKELNVEPYDEDDRTGDLRYVQMAV 175
             +G Y+ GT  V   P    H P      V+  ++ I+      YD +  +G   + Q+ V
Sbjct:   257 LGKYKGGTCAVA-APFDTVHIPTATKQVVKAFQEFIRSTPYSAYDPETYSG--HWKQLTV 313

Query:   176 TTYNTSLPASERYRNGKVQITLVWNSRNEKSPN--SDKLESLAEFLWRNGGSRSREHYIH 233
              T           R G+  + + +    + SP   +    SLA+      G  S    ++
Sbjct:   314 RTS----------RRGQA-MAIAYFHPQKLSPEELAGLKASLAQHFTTGPGKASGVTCLY 362

Query:   234 SVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQ 293
              V    + + +    G    H+ G+   +E++ G+   ++P +F Q NT A ++L   +Q
Sbjct:   363 FVEEGQRKTPSQE--GLPLEHVAGDQCIYEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQ 420

Query:   294 KYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDG 351
              +     G++V D+  G G IGL+LA  RK + V  VE+++E+    +  V+ L   +  
Sbjct:   421 DWAQLDTGSTVLDVCCGTGTIGLALA--RKVKRVVGVELSQEAV--DDARVNALDNELS- 475

Query:   352 NISWH--NADNSIEPLSWLVGSDVLV--VDPPRKGLDSSLVHALQ 392
             N+ +H   A++ + PL   + S  LV  +DPPR GL S ++ A++
Sbjct:   476 NVEFHCGRAEDLVPPLVSRLASQQLVAILDPPRAGLHSKVILAVR 520

GO:0008173 "RNA methyltransferase activity" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	457
TIGR00479	431	TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransf	3e-34
COG2265	432	COG2265, TrmA, SAM-dependent methyltransferases re	6e-34
PRK03522	315	PRK03522, rumB, 23S rRNA methyluridine methyltrans	2e-10
TIGR02085	374	TIGR02085, meth_trns_rumB, 23S rRNA (uracil-5-)-me	3e-07
COG0742	187	COG0742, COG0742, N6-adenine-specific methylase [D	3e-04
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	6e-04
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	0.002
PRK13168	443	PRK13168, rumA, 23S rRNA m(5)U1939 methyltransfera	0.003
pfam03602	183	pfam03602, Cons_hypoth95, Conserved hypothetical p	0.003

>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA

 Score =  132 bits (334), Expect = 3e-34
 Identities = 84/353 (23%), Positives = 142/353 (40%), Gaps = 42/353 (11%)

Query: 54  CPHFQSCSGC-----THEFNLH--RPIIVD--EATDFFKSIGLLDFTFDSCRLYGWRCRA 104
           CP F  C GC      +EF L   +  ++   E    F S  +          +G+R +A
Sbjct: 58  CPVFDQCGGCQLQHLDYEFQLRSKQQQVIALLERIGKFTSEPIEPLPTIGGDPWGYRNKA 117

Query: 105 KLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
           +L++ R  S     G YQ+G+H++V I  C    P +N  +  ++  ++      Y E  
Sbjct: 118 RLSLGRSPSGQIQAGFYQKGSHDIVPIKQCPVQDPALNLLLPKVKAILENFGASIYLEHK 177

Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
             G  R+  + +               G++ + L   +  E  P+    E LA  L    
Sbjct: 178 ELGKARHGVLRIGRRT-----------GELLLVLR--TALEGFPHK---EELALEL---- 217

Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
             + R   + S+  N      NVIFG     + GE   +E  G +  SL+   F Q N+ 
Sbjct: 218 --QERYPDVKSICQNINPEKTNVIFGEETEQIAGEGPIYEKSGDLSFSLSARDFFQVNSG 275

Query: 284 AFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
             + L+ +  + +       V D Y G G   L L  A++ +SV  +E+  E   S EK 
Sbjct: 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPL--AKQAKSVVGIEVVPE---SVEKA 330

Query: 342 VSRLPKSVDGNISWH--NADNSIEPLSWL-VGSDVLVVDPPRKGLDSSLVHAL 391
                 +   N+ +     +  +    W     DVL++DPPRKG  + ++  +
Sbjct: 331 QQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTI 383

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [Protein synthesis, tRNA and rRNA base modification]. Length = 431

>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

 Score =  131 bits (332), Expect = 6e-34
 Identities = 93/356 (26%), Positives = 148/356 (41%), Gaps = 49/356 (13%)

Query: 53  QCPHFQSCSGCTHEF---NLHRPIIVDEATDFFKSIGLLDFTFD----SCRLYGWRCRAK 105
            CPHF  C GC  +            ++  +  K IG  +   D        +G+R RA+
Sbjct: 68  PCPHFGRCGGCQLQHLSYEAQLEFKREQLKELLKRIGGSEVEIDPTVGMSPPWGYRNRAR 127

Query: 106 LAVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
            +VRG+    L  G +++G+H +VDI  C    PR N  + LLR+ + +L + PY+E  +
Sbjct: 128 FSVRGSGKGQLLAGFFRQGSHEIVDIDECPVFPPRSNEILPLLRELLAKLGLPPYNEKKK 187

Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGK-VQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
            G LR + +               R G+ V + LV       + +  +LE     L    
Sbjct: 188 KGILRLIVL---------------REGQEVMVRLV-------TKHLPELEQALRELLEAF 225

Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
                   I  +  N   +  NVI G+    L G     E   G+   ++P SF Q N  
Sbjct: 226 PE------IKGIVQNINRAKTNVIEGDEEITLYGLESIRE---GVSFQISPRSFFQVNPA 276

Query: 284 AFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
             + L     +++       V DLY G G  GL L  A++ + V  VEI+ E+  + ++ 
Sbjct: 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPL--AKRVKKVHGVEISPEAVEAAQEN 334

Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWLVGS--DVLVVDPPRKGLDSSLVHALQSIG 395
            +        N+ +   D      +W  G   DV+VVDPPR G D  ++  L  + 
Sbjct: 335 AAANGI---DNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLK 387

Length = 432

>gnl|CDD|235128 PRK03522, rumB, 23S rRNA methyluridine methyltransferase; Reviewed

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 62/303 (20%), Positives = 116/303 (38%), Gaps = 51/303 (16%)

Query: 106 LAVRGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
           + V G+   PL+G L+++GT   VD+  C  +          L+  I    + PY+   +
Sbjct: 1   MVVSGSVERPLLGILHRDGTP--VDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARK 58

Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
            G+L+Y+ +  +             +G++ +  V  S         KL  L   L     
Sbjct: 59  RGELKYILLTESQS-----------DGELMLRFVLRSET-------KLARLRRAL----- 95

Query: 225 SRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
              +     +  +  N Q     ++ G     L  +    E   G+ + + P SF Q N 
Sbjct: 96  PWLQAQLPQLKVISVNIQPVHMAILEGEEEIFLTEQQALPERFNGVPLFIRPQSFFQTNP 155

Query: 283 RAFDILLRKLQKYV----PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
                L    + +V    P   S+ DL+ G G  G  L  A     +  +EI+ E+    
Sbjct: 156 AVAAQLYATARDWVRELPP--RSMWDLFCGVG--GFGLHCATPGMQLTGIEISAEAIACA 211

Query: 339 EKTVSRLPKSVDG--NISWHNADNSIEPLSWLVGS----DVLVVDPPRKGLDSSLVHALQ 392
           +++ + L     G  N+ +   D++     +        D+++V+PPR+G+   L   L 
Sbjct: 212 KQSAAEL-----GLTNVQFQALDST----QFATAQGEVPDLVLVNPPRRGIGKELCDYLS 262

Query: 393 SIG 395
            + 
Sbjct: 263 QMA 265

Length = 315

>gnl|CDD|131140 TIGR02085, meth_trns_rumB, 23S rRNA (uracil-5-)-methyltransferase RumB

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 63/325 (19%), Positives = 129/325 (39%), Gaps = 44/325 (13%)

Query: 99  GWRCRAKLAVRGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
            +R +AK+ V G+   P++G L+++GT   +D+  C  +          L+  I    + 
Sbjct: 54  AFRNKAKMVVSGSVERPILGILHRDGTP--LDLCDCPLYPQSFQPVFAYLKNFIARAGLT 111

Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
           PY+   + G+L+++ +  +  +           G++ +  V  S  + +     L  L E
Sbjct: 112 PYNVAKKKGELKFILLTESENS-----------GQLMLRFVLRSETKLAQIRRALPWLIE 160

Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
            L            +  +  N Q     ++ G     L  +    E    + + + P SF
Sbjct: 161 QL----------PQLEVISVNIQPVHMAILEGEEEIFLTEQQALPERFNDVPLVIRPQSF 210

Query: 278 GQANTRAFDILLRKLQKYV----PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
            Q N +    L    +++V         + DL+ G G  G  L  A     +  +EI  E
Sbjct: 211 FQTNPKVAAQLYATARQWVREIPVT--QMWDLFCGVG--GFGLHCAGPDTQLTGIEIESE 266

Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQS 393
           +    +++   L      N+S+   D++    + +   ++++V+PPR+G+   L   L  
Sbjct: 267 AIACAQQSAQMLGLD---NLSFAALDSAKFATAQMSAPELVLVNPPRRGIGKELCDYLSQ 323

Query: 394 IG---------SAERKAKSLSESSS 409
           +          +A+  AK ++E S 
Sbjct: 324 MAPKFILYSSCNAQTMAKDIAELSG 348

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA [Protein synthesis, tRNA and rRNA base modification]. Length = 374

>gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 11/125 (8%)

Query: 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA 358
           GA V DL+AG+G +GL  A +R    V  VE ++++    ++ +  L     G       
Sbjct: 44  GARVLDLFAGSGALGLE-ALSRGAARVVFVEKDRKAVKILKENLKALGLE--GEARVLRN 100

Query: 359 DNS--IEPLSWLVGSDVLVVDPP-RKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEE 415
           D    ++ L      D++ +DPP  KGL    +  L        +   L   +  +V+ +
Sbjct: 101 DALRALKQLGTREPFDLVFLDPPYAKGLLDKELALL-----LLEENGWLKPGALIVVEHD 155

Query: 416 KRPWI 420
           K   +
Sbjct: 156 KDVEL 160

Length = 187

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 10/108 (9%)

Query: 287 ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP 346
           +LL  L K  P G  V DL  G GV+G +LA       V  V+IN  +  S    +    
Sbjct: 22  LLLSHLPK--PLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANL-AAN 78

Query: 347 KSVDGNISWHNADNSIEPLSWLVGSDVLVVDPP-RKGLDS--SLVHAL 391
              +G + W +  +++EP  +    D+++ +PP   G  +   +    
Sbjct: 79  GLENGEVFWSDLYSAVEPGKF----DLIISNPPFHAGKATDYDVAQRF 122

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 304 DLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE 363
           DL  G G + L+LA+    R    V+I+    L   +  +        N+     D + E
Sbjct: 4   DLGCGTGALALALASGPGARVT-GVDIS-PVALELARKAAAALL--ADNVEVLKGD-AEE 58

Query: 364 PLSWLVGS-DVLVVDPPRKGLDSSLVHALQSI 394
                  S DV++ DPP   L   L   L+  
Sbjct: 59  LPPEADESFDVIISDPPLHHLVEDLARFLEEA 90

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|237291 PRK13168, rumA, 23S rRNA m(5)U1939 methyltransferase; Reviewed

 Score = 39.4 bits (93), Expect = 0.003
 Identities = 30/133 (22%), Positives = 44/133 (33%), Gaps = 55/133 (41%)

Query: 54  CPHFQSCSGCT--H--------------EFNLHR----------PIIVDEATDFFKSIGL 87
           CPHF  C GC   H              E  L            P I             
Sbjct: 80  CPHFGVCGGCQLQHLSIDAQIASKQRALEDLLKHLAGVEPEEVLPPIAGPP--------- 130

Query: 88  LDFTFDSCRLYGWRCRAKLAVR------GTSTSPLIGLYQEGTHNVVDIPHCKAHHPRIN 141
                     +G+R RA+L+VR            L+G  ++ + ++VDI  C    P ++
Sbjct: 131 ----------WGYRRRARLSVRYVPKKGQL----LVGFREKNSSDIVDIDQCPVLVPPLS 176

Query: 142 AAVELLRQGIKEL 154
           A +  LR  +  L
Sbjct: 177 ALLPPLRALLSSL 189

Length = 443

>gnl|CDD|202698 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345
           GA V DL+AG+G +GL  A +R   SV  VE +K++  + ++ +  L
Sbjct: 44  GARVLDLFAGSGALGLE-ALSRGAASVVFVEKDKKAVATLKENLEAL 89

Length = 183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	457
COG2265	432	TrmA SAM-dependent methyltransferases related to t	100.0
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	100.0
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	100.0
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	100.0
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	100.0
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	100.0
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	100.0
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	100.0
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	100.0
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.83
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.8
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.76
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.74
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.69
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.68
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.66
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.63
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.61
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.61
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.59
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.59
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.56
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.56
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.54
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.53
COG2890	280	HemK Methylase of polypeptide chain release factor	99.51
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.51
COG2520	341	Predicted methyltransferase [General function pred	99.48
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.45
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.45
COG4123	248	Predicted O-methyltransferase [General function pr	99.44
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.38
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.37
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.36
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.35
KOG2904	328	consensus Predicted methyltransferase [General fun	99.33
PRK14967	223	putative methyltransferase; Provisional	99.33
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.33
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.31
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.31
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.3
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.3
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.3
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.28
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.28
PLN02672	1082	methionine S-methyltransferase	99.27
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.27
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.25
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.23
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.23
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.22
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.22
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.21
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.21
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.2
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.19
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.18
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.18
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.17
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.16
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.16
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.15
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.15
PRK07402	196	precorrin-6B methylase; Provisional	99.14
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.14
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.12
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.11
PHA03412	241	putative methyltransferase; Provisional	99.11
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.11
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.1
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.1
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.07
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.06
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.01
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.98
PHA03411	279	putative methyltransferase; Provisional	98.98
PRK14968	188	putative methyltransferase; Provisional	98.97
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.96
PRK04457	262	spermidine synthase; Provisional	98.94
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.94
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.93
PRK12335	287	tellurite resistance protein TehB; Provisional	98.93
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.92
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.9
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.89
PLN02476	278	O-methyltransferase	98.89
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.89
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.89
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.89
PLN02244	340	tocopherol O-methyltransferase	98.89
PRK11207	197	tellurite resistance protein TehB; Provisional	98.88
PRK04266	226	fibrillarin; Provisional	98.88
PRK00811	283	spermidine synthase; Provisional	98.87
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.87
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.86
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.86
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.83
PRK10742	250	putative methyltransferase; Provisional	98.83
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.83
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.81
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.79
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.79
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.79
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.79
KOG2730	263	consensus Methylase [General function prediction o	98.78
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.78
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.77
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.77
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.76
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.76
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.76
PRK03612	521	spermidine synthase; Provisional	98.74
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.73
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.73
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.72
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.71
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.71
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.7
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.7
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.7
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.69
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.69
PRK01581	374	speE spermidine synthase; Validated	98.67
PLN02336	475	phosphoethanolamine N-methyltransferase	98.66
COG2521	287	Predicted archaeal methyltransferase [General func	98.66
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.66
PLN02366	308	spermidine synthase	98.64
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.64
TIGR00438	188	rrmJ cell division protein FtsJ.	98.63
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.61
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.61
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.6
PLN02490	340	MPBQ/MSBQ methyltransferase	98.59
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.56
PLN03075	296	nicotianamine synthase; Provisional	98.56
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.55
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.55
PTZ00146	293	fibrillarin; Provisional	98.55
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.54
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.53
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.53
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.52
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.52
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.51
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.51
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.51
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.5
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.5
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.5
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.49
KOG1227	351	consensus Putative methyltransferase [General func	98.49
PRK06922	677	hypothetical protein; Provisional	98.48
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.46
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.45
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.44
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.44
PRK08317	241	hypothetical protein; Provisional	98.43
PRK05785	226	hypothetical protein; Provisional	98.42
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.42
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.39
COG4122	219	Predicted O-methyltransferase [General function pr	98.39
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.39
TIGR03438	301	probable methyltransferase. This model represents	98.38
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.38
KOG1271	227	consensus Methyltransferases [General function pre	98.36
PLN02823	336	spermine synthase	98.36
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	98.36
PLN02336	475	phosphoethanolamine N-methyltransferase	98.36
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.33
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.32
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.32
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.32
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.31
PRK06202	232	hypothetical protein; Provisional	98.31
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.3
PRK04148	134	hypothetical protein; Provisional	98.3
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.28
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.28
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.27
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.27
COG4076	252	Predicted RNA methylase [General function predicti	98.27
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.23
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.2
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.19
KOG2078	495	consensus tRNA modification enzyme [RNA processing	98.14
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.09
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	98.06
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.03
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.02
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.02
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.02
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.84
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.84
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.83
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.8
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.79
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.76
PF13679	141	Methyltransf_32: Methyltransferase domain	97.75
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.73
COG3897	218	Predicted methyltransferase [General function pred	97.72
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.71
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.7
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.69
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.69
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.67
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.62
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.62
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.61
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.58
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.55
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.5
PHA01634	156	hypothetical protein	97.5
KOG2899	288	consensus Predicted methyltransferase [General fun	97.48
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	97.45
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	97.45
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	97.41
KOG4300	252	consensus Predicted methyltransferase [General fun	97.38
PRK11524	284	putative methyltransferase; Provisional	97.33
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.33
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	97.32
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.24
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.24
KOG2671	421	consensus Putative RNA methylase [Replication, rec	97.2
KOG3010	261	consensus Methyltransferase [General function pred	97.2
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.19
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.19
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.14
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.12
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	97.09
PRK13699	227	putative methylase; Provisional	97.04
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.95
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	96.89
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	96.8
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	96.73
COG0286	489	HsdM Type I restriction-modification system methyl	96.69
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	96.67
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	96.54
PRK10458	467	DNA cytosine methylase; Provisional	96.52
PRK00536	262	speE spermidine synthase; Provisional	96.5
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	96.42
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.27
KOG2361	264	consensus Predicted methyltransferase [General fun	96.23
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.16
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.06
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	96.04
COG1568	354	Predicted methyltransferases [General function pre	95.97
KOG1501	636	consensus Arginine N-methyltransferase [General fu	95.92
KOG4058	199	consensus Uncharacterized conserved protein [Funct	95.72
PLN02232	160	ubiquinone biosynthesis methyltransferase	95.69
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	95.6
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	95.56
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	95.42
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.4
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	95.22
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	95.02
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	95.01
KOG3201	201	consensus Uncharacterized conserved protein [Funct	94.73
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	94.62
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	94.35
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	94.3
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	94.23
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	94.21
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	94.12
COG2961	279	ComJ Protein involved in catabolism of external DN	93.84
COG3129	292	Predicted SAM-dependent methyltransferase [General	93.78
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	93.62
TIGR00497	501	hsdM type I restriction system adenine methylase (	93.33
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	93.12
KOG2940	325	consensus Predicted methyltransferase [General fun	92.73
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	92.71
COG0863	302	DNA modification methylase [DNA replication, recom	92.63
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	92.5
KOG3115	249	consensus Methyltransferase-like protein [General	91.89
KOG3924	419	consensus Putative protein methyltransferase invol	91.84
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	91.56
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	90.98
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	90.54
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	89.39
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	89.31
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	89.01
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	88.28
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	87.27
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	86.96
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	86.3
KOG2920	282	consensus Predicted methyltransferase [General fun	85.49
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	83.24
PRK11524	284	putative methyltransferase; Provisional	82.64
PRK13699	227	putative methylase; Provisional	81.05
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	80.21
KOG2352	482	consensus Predicted spermine/spermidine synthase [	80.15

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.6e-60  Score=486.49  Aligned_cols=341  Identities=28%  Similarity=0.457  Sum_probs=291.1

Q ss_pred             CCCCCccCCCCCCCcCccCccCc-cCCchHHH--HHHHHHHHhcCC-C---ceecccCCCccceeeeeEEeeecC-CCce
Q 044572           45 LPSLTCALQCPHFQSCSGCTHEF-NLHRPIIV--DEATDFFKSIGL-L---DFTFDSCRLYGWRCRAKLAVRGTS-TSPL  116 (457)
Q Consensus        45 ~~~~Rv~p~C~~f~~CGGC~lqh-~~~~~~~~--~~~~~~l~r~g~-~---~~~~~s~~~~~YRnR~~l~v~~~~-g~~~  116 (457)
                      .||+|+.|+|+||+.||||+||| .|+.|+..  +.+.++|++++. .   +.++.++.+||||||++|+++... +...
T Consensus        60 ~Sp~R~~~~c~~~g~cggC~lqhl~y~~QL~~K~~~l~~~l~~~~~~~~~~~~~~~~~~~~~yR~ka~~~v~~~~~~~l~  139 (432)
T COG2265          60 ASPDRVDPPCPHFGRCGGCQLQHLSYEAQLEFKREQLKELLKRIGGSEVEIDPTVGMSPPWGYRNRARFSVRGSGKGQLL  139 (432)
T ss_pred             CChhhcCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhcCCCcccccccCCCCCcCceeEEEEEEEEcCCCcEE
Confidence            67999999999999999999999 34344432  457889999763 2   235678999999999999998643 4578


Q ss_pred             EEEeecCccceEeCCCCccCChhHHHHHHHHHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCccccccCCcEEEE
Q 044572          117 IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQIT  196 (457)
Q Consensus       117 vGf~~~~s~~iv~i~~C~i~~p~i~~~l~~l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~~~~~~v~v~  196 (457)
                      +|||+++||+||++.+|++.+|.+++++..++++++..+.++||+.++.|.++++.  +|.           .. ++|++
T Consensus       140 ~Gf~~~~s~~iv~i~~C~v~~~~~~~il~~l~~~l~~~~~~~y~~~~~~g~l~~~~--~~~-----------g~-~~~i~  205 (432)
T COG2265         140 AGFFRQGSHEIVDIDECPVFPPRSNEILPLLRELLAKLGLPPYNEKKKKGILRLIV--LRE-----------GQ-EVMVR  205 (432)
T ss_pred             EEeeccCCCceecccccCccCHhHHHHHHHHHHHHHHcCCCccchhhccceEEEEE--ecc-----------Cc-eEEEE
Confidence            99999999999999999999999999999999999999999999999999999863  331           11 68998


Q ss_pred             EEeCCCCCCCCCchhHHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccCeEEEeeeeEEEEECCCC
Q 044572          197 LVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS  276 (457)
Q Consensus       197 lv~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~g~~~~i~~~~  276 (457)
                      +++++.       +.+++..+.+..      .++.+.+++++++.+..+.+.+.+...++|...+.+   +..|.+++.+
T Consensus       206 ~v~~~~-------~~~~~~~~~~~~------~~~~~~~i~~~i~~~~~~~i~g~~~~~~~~~~~i~e---~~~~~~~~~s  269 (432)
T COG2265         206 LVTKHL-------PELEQALRELLE------AFPEIKGIVQNINRAKTNVIEGDEEITLYGLESIRE---GVSFQISPRS  269 (432)
T ss_pred             EEeccc-------hhHHHHHHHHHH------hhhhcceEEEEecCCCCceEEcceeEEEeccccccc---ceEEEeCCCC
Confidence            888751       233444444432      356678999999999999999999999999884444   9999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEE
Q 044572          277 FGQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNIS  354 (457)
Q Consensus       277 FfQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~  354 (457)
                      |||+|..+++.|++++.+++.  ++++|||||||+|+||+++|+.  +++|+|||++++|++.|++||+.   |+.+|++
T Consensus       270 F~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~---n~i~N~~  344 (432)
T COG2265         270 FFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAA---NGIDNVE  344 (432)
T ss_pred             ceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHH---cCCCcEE
Confidence            999999999999999999986  5689999999999999999965  66999999999999999999998   4567899


Q ss_pred             EEEccCCcCccccc--CCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHh
Q 044572          355 WHNADNSIEPLSWL--VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEA  426 (457)
Q Consensus       355 ~~~~d~~~~~~~~~--~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~  426 (457)
                      |+.+|++++...+.  ..+|+||+||||+|+++++++.|.++. +.+|||||     ||+.++.||...+....
T Consensus       345 f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~-p~~IvYVS-----CNP~TlaRDl~~L~~~g  412 (432)
T COG2265         345 FIAGDAEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLK-PKRIVYVS-----CNPATLARDLAILASTG  412 (432)
T ss_pred             EEeCCHHHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcC-CCcEEEEe-----CCHHHHHHHHHHHHhCC
Confidence            99999999877653  478999999999999999999999997 99999999     99999999988876654

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=100.00  E-value=1e-57  Score=475.71  Aligned_cols=365  Identities=23%  Similarity=0.329  Sum_probs=296.8

Q ss_pred             CCCCCCccCCCCCCCcCccCccCc-cCCchHHH--HHHHHHHHhcC-CC--cee---cccCCCccceeeeeEEeeec-CC
Q 044572           44 NLPSLTCALQCPHFQSCSGCTHEF-NLHRPIIV--DEATDFFKSIG-LL--DFT---FDSCRLYGWRCRAKLAVRGT-ST  113 (457)
Q Consensus        44 ~~~~~Rv~p~C~~f~~CGGC~lqh-~~~~~~~~--~~~~~~l~r~g-~~--~~~---~~s~~~~~YRnR~~l~v~~~-~g  113 (457)
                      ..||+|++|+||||+.||||+||| .|+.|+..  +.+.++|+|++ +.  +++   +..+.+||||||++|+++.. .|
T Consensus        48 ~~S~~Rv~p~C~~~~~CGGC~~qh~~y~~Ql~~K~~~v~~~l~r~~~~~~~~~~~~~~~~~~~~~YRnr~~~~v~~~~~g  127 (431)
T TIGR00479        48 EPSPERTRPPCPVFDQCGGCQLQHLDYEFQLRSKQQQVIALLERIGKFTSEPIEPLPTIGGDPWGYRNKARLSLGRSPSG  127 (431)
T ss_pred             CCCcCcCCCCCCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHhcCCCcCCceecCCcCCCCCcccceeEEEeeecCCC
Confidence            367999999999999999999999 34444433  45788999876 32  221   11257899999999999643 46


Q ss_pred             CceEEEeecCccceEeCCCCccCChhHHHHHHHHHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCccccccCCcE
Q 044572          114 SPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKV  193 (457)
Q Consensus       114 ~~~vGf~~~~s~~iv~i~~C~i~~p~i~~~l~~l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~~~~~~v  193 (457)
                      +..+|||+++||++|++++|++++|.+++++..+++++++.++++|+..+++|.||++.++..           ..++++
T Consensus       128 ~~~~G~~~~~s~~vv~i~~C~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~lr~i~ir~~-----------~~~~~~  196 (431)
T TIGR00479       128 QIQAGFYQKGSHDIVPIKQCPVQDPALNLLLPKVKAILENFGASIYLEHKELGKARHGVLRIG-----------RRTGEL  196 (431)
T ss_pred             CEEEeeecCCCcceEcCCCCCCCCHHHHHHHHHHHHHHHHcCCCccccccCcccceEEEEEEe-----------ccCCCE
Confidence            678999999999999999999999999999999999999999999999999999999765432           146788


Q ss_pred             EEEEEeCCCCCCCCCchhHHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccCeEEEeeeeEEEEEC
Q 044572          194 QITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA  273 (457)
Q Consensus       194 ~v~lv~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~g~~~~i~  273 (457)
                      |+++++.....     ...+.+++.+..      ..+.+.++++++++...+.+++.++.+++|..+++++++|.+|.++
T Consensus       197 ~v~~~~~~~~~-----~~~~~~~~~l~~------~~~~v~~v~~~~~~~~~~~~~g~~~~~l~G~~~~~~~~~~~~~~~~  265 (431)
T TIGR00479       197 LLVLRTALEGF-----PHKEELALELQE------RYPDVKSICQNINPEKTNVIFGEETEQIAGEGPIYEKSGDLSFSLS  265 (431)
T ss_pred             EEEEEECCCcc-----ccHHHHHHHHHH------hCCCceEEEEEeCCCCCCeeeCCceEEEeCCCeEEEEECCEEEEEC
Confidence            98887654321     123345554432      2456889999999988888889889999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCC
Q 044572          274 PSSFGQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDG  351 (457)
Q Consensus       274 ~~~FfQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~  351 (457)
                      +++|||+|+.+++.|++.+.+++.  ++++|||+|||+|.+++.+|+.  +.+|+|||++++|++.|++|++.+   +.+
T Consensus       266 ~~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~---~~~  340 (431)
T TIGR00479       266 ARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELN---GIA  340 (431)
T ss_pred             CCceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHh---CCC
Confidence            999999999999999999988764  5689999999999999999975  469999999999999999999874   357


Q ss_pred             cEEEEEccCCcCcccc---cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhcc
Q 044572          352 NISWHNADNSIEPLSW---LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASV  428 (457)
Q Consensus       352 nv~~~~~d~~~~~~~~---~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~  428 (457)
                      |++|+++|+.+.+..+   ...||+|++||||.|+..++++.+..+. +++++|+|     |++.++.+++..+....  
T Consensus       341 nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l~~l~-~~~ivyvs-----c~p~tlard~~~l~~~g--  412 (431)
T TIGR00479       341 NVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTIIELK-PERIVYVS-----CNPATLARDLEFLCKEG--  412 (431)
T ss_pred             ceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCCCHHHHHHHHhcC-CCEEEEEc-----CCHHHHHHHHHHHHHCC--
Confidence            8999999997654332   2369999999999999999999998886 78999999     99999999988775431  


Q ss_pred             ccccccCCCCCCCCCc
Q 044572          429 QIGSKTNSENQSLPQT  444 (457)
Q Consensus       429 ~~~~~~~~~~~~~p~~  444 (457)
                       +........+.+|+|
T Consensus       413 -y~~~~~~~~DmFP~T  427 (431)
T TIGR00479       413 -YGITWVQPVDMFPHT  427 (431)
T ss_pred             -eeEEEEEEeccCCCC
Confidence             212222356788887

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=100.00  E-value=1.3e-56  Score=457.97  Aligned_cols=353  Identities=17%  Similarity=0.292  Sum_probs=283.6

Q ss_pred             CCCCC--CcCccCccCc-cCCchHHH--HHHHHHHHhcCCCc--ee-cccCCCccceeeeeEEeeecCCCceEEEeecCc
Q 044572           53 QCPHF--QSCSGCTHEF-NLHRPIIV--DEATDFFKSIGLLD--FT-FDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGT  124 (457)
Q Consensus        53 ~C~~f--~~CGGC~lqh-~~~~~~~~--~~~~~~l~r~g~~~--~~-~~s~~~~~YRnR~~l~v~~~~g~~~vGf~~~~s  124 (457)
                      .||||  +.||||+||| .|+.|+..  +.++++|+| ++.+  +. ...+.+||||||++|+++...++..+||+.++ 
T Consensus         1 ~C~~~~~~~CGGC~~qhl~y~~Ql~~K~~~v~~~l~r-~~~~~~~~~~i~~~~~~YRnr~~l~v~~~~~~~~~G~~~~~-   78 (374)
T TIGR02085         1 QCAFYIQGRCRSCQWLAQPYSEQLTNKQQHLKELLAP-NATVVQWLAPVTSAEQAFRNKAKMVVSGSVERPILGILHRD-   78 (374)
T ss_pred             CCCCCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHhh-cCCCccccCCcCCCCccccceEEEEEEEcCCcEEEeEecCC-
Confidence            59999  6999999999 34444433  458899998 6522  21 22335899999999999755566789988776 


Q ss_pred             cceEeCCCCccCChhHHHHHHHHHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCccccccCCcEEEEEEeCCCCC
Q 044572          125 HNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNE  204 (457)
Q Consensus       125 ~~iv~i~~C~i~~p~i~~~l~~l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~~~~~~v~v~lv~~~~~~  204 (457)
                      |.+|+|++|++++|.+++++..+++++++.++++|++.+++|.||++.++..           ..++++|+++++.....
T Consensus        79 ~~~v~i~~C~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lr~i~ir~~-----------~~~~~~~v~l~~~~~~~  147 (374)
T TIGR02085        79 GTPLDLCDCPLYPQSFQPVFAYLKNFIARAGLTPYNVAKKKGELKFILLTES-----------ENSGQLMLRFVLRSETK  147 (374)
T ss_pred             CcEEcCccCCCCCHhHHHHHHHHHHHHHHcCCCCccccCCCccceEEEEEEe-----------ccCCCEEEEEEECCCcc
Confidence            7799999999999999999999999999999999999999999999866542           14688999887654211


Q ss_pred             CCCCchhHHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccCeEEEeeeeEEEEECCCCCCCCCHHH
Q 044572          205 KSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA  284 (457)
Q Consensus       205 ~~~~~~~~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~~~  284 (457)
                          .+.++++.+.+..      ..+.+.+++++.++...+.+++.+..+++|+.++.++++|++|++++++|||+|..+
T Consensus       148 ----~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~g~~~~~l~G~~~i~e~~~g~~~~~~~~~F~Q~n~~~  217 (374)
T TIGR02085       148 ----LAQIRRALPWLIE------QLPQLEVISVNIQPVHMAILEGEEEIFLTEQQALPERFNDVPLVIRPQSFFQTNPKV  217 (374)
T ss_pred             ----chhHHHHHHHHHH------HCCCcEEEEEEECCCCCCceECceEEEEcCCCeeEEEECCEEEEECCCccccCCHHH
Confidence                1223344333321      235678888888988888888877888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572          285 FDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI  362 (457)
Q Consensus       285 ~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~  362 (457)
                      ++.|++.+.+++.  .+.+|||||||+|++|+.+|..  +.+|+|||+++.|++.|++|++.+   ..+|++|+++|+.+
T Consensus       218 ~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~---~~~~~~~~~~d~~~  292 (374)
T TIGR02085       218 AAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQML---GLDNLSFAALDSAK  292 (374)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHc---CCCcEEEEECCHHH
Confidence            9999999888753  5689999999999999999964  369999999999999999999984   34689999999977


Q ss_pred             CcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccccccccCCCCCCCC
Q 044572          363 EPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSENQSLP  442 (457)
Q Consensus       363 ~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  442 (457)
                      .+......||+||+||||.|++.++++.+..+. ++++||+|     |++.++.||+..+   .+  +.-+.....+.+|
T Consensus       293 ~~~~~~~~~D~vi~DPPr~G~~~~~l~~l~~~~-p~~ivyvs-----c~p~TlaRDl~~L---~g--y~l~~~~~~DmFP  361 (374)
T TIGR02085       293 FATAQMSAPELVLVNPPRRGIGKELCDYLSQMA-PKFILYSS-----CNAQTMAKDIAEL---SG--YQIERVQLFDMFP  361 (374)
T ss_pred             HHHhcCCCCCEEEECCCCCCCcHHHHHHHHhcC-CCeEEEEE-----eCHHHHHHHHHHh---cC--ceEEEEEEeccCC
Confidence            654333469999999999999999999999886 89999999     9999999999887   11  2222223668888


Q ss_pred             Cc
Q 044572          443 QT  444 (457)
Q Consensus       443 ~~  444 (457)
                      +|
T Consensus       362 qT  363 (374)
T TIGR02085       362 HT  363 (374)
T ss_pred             CC
Confidence            87

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=100.00  E-value=3e-50  Score=420.36  Aligned_cols=343  Identities=22%  Similarity=0.348  Sum_probs=251.4

Q ss_pred             CCCCCccCCCCCCCcCccCccCc-cCCchHHH--HHHHHHHHhcC-CCc--ee-cccCCCccceeeeeEEeee--cCCCc
Q 044572           45 LPSLTCALQCPHFQSCSGCTHEF-NLHRPIIV--DEATDFFKSIG-LLD--FT-FDSCRLYGWRCRAKLAVRG--TSTSP  115 (457)
Q Consensus        45 ~~~~Rv~p~C~~f~~CGGC~lqh-~~~~~~~~--~~~~~~l~r~g-~~~--~~-~~s~~~~~YRnR~~l~v~~--~~g~~  115 (457)
                      .+|+|++|+|+||+.||||+||| .|++|+..  +.++++|+|++ +..  +. ...+.+||||||++|+++.  ..|++
T Consensus        71 ~sp~Rv~p~C~~~~~CGGC~~qh~~y~~Ql~~K~~~v~~~l~r~~~~~~~~~~~~i~~~~~~YRnk~~~~~~~~~~~g~~  150 (443)
T PRK13168         71 PSPERVTPRCPHFGVCGGCQLQHLSIDAQIASKQRALEDLLKHLAGVEPEEVLPPIAGPPWGYRRRARLSVRYVPKKGQL  150 (443)
T ss_pred             CCcccCCCCCCcCCcCcCchhcCCCHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcCCCCCCCceEEEEeeeecCCCCE
Confidence            67999999999999999999999 44444443  45789999986 322  21 2233689999999999964  24667


Q ss_pred             eEEEeecCccceEeCCCCccCChhHHHHHHHHHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCccccccCCcEEE
Q 044572          116 LIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQI  195 (457)
Q Consensus       116 ~vGf~~~~s~~iv~i~~C~i~~p~i~~~l~~l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~~~~~~v~v  195 (457)
                      .+|||+++||+||++++|++++|.+++++..++++++..+.     .   |.++++.++.+            .++..++
T Consensus       151 ~~G~~~~~s~~vv~i~~C~l~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~l~~~~~------------~~~~~~~  210 (443)
T PRK13168        151 LVGFREKNSSDIVDIDQCPVLVPPLSALLPPLRALLSSLSA-----K---RRLGHVELAQG------------DNGTALV  210 (443)
T ss_pred             EEEEecCCCceeEECCCCccCCHhHHHHHHHHHHHHHHcCC-----C---ccccEEEEEEe------------CCceEEE
Confidence            89999999999999999999999999999999998876432     1   34566544432            2444443


Q ss_pred             EEEeCCCCCCCCCchhHHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeecc----CeEEEeeeeEEEE
Q 044572          196 TLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGE----TDFWENVGGIDIS  271 (457)
Q Consensus       196 ~lv~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~----~~~~~~~~g~~~~  271 (457)
                      ......  ..   ....+.+.+ +..       ...+ ++++  +...      .+...++|.    ..+.++++|++|+
T Consensus       211 ~~~~~~--~~---~~~~~~~~~-~~~-------~~~~-~i~~--~~~~------~~~~~i~g~~~~~~~~~~~~~g~~f~  268 (443)
T PRK13168        211 LRHLEP--LS---EADRAKLRA-FAE-------QHGL-QLYL--QPKG------PDLVHLLGPADAQLSYYLPEFGLRLA  268 (443)
T ss_pred             EEEcCC--CC---hHHHHHHHH-Hhh-------cccE-EEEE--ECCC------CcceeecccccCCcceEEEcCCeEEE
Confidence            322121  11   112223322 221       1233 5543  3321      223344554    2344458999999


Q ss_pred             ECCCCCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCC
Q 044572          272 LAPSSFGQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV  349 (457)
Q Consensus       272 i~~~~FfQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~  349 (457)
                      ++|++|||+|+.+++.|++.+.+++.  ++.+|||+|||+|.+++.+|..  +.+|+|||+|++|++.|++|++.+   +
T Consensus       269 ~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~---~  343 (443)
T PRK13168        269 FSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRN---G  343 (443)
T ss_pred             ECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHc---C
Confidence            99999999999999999999998764  6789999999999999999976  369999999999999999999874   3


Q ss_pred             CCcEEEEEccCCcCccc--c-cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHh
Q 044572          350 DGNISWHNADNSIEPLS--W-LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEA  426 (457)
Q Consensus       350 ~~nv~~~~~d~~~~~~~--~-~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~  426 (457)
                      .+|++|+++|+.+.+..  + ...||+|++||||.|+. ++++.+.++. +++++|+|     |++.++.||+..+... 
T Consensus       344 ~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~-~~~~~l~~~~-~~~ivyvS-----Cnp~tlaRDl~~L~~~-  415 (443)
T PRK13168        344 LDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGAA-EVMQALAKLG-PKRIVYVS-----CNPATLARDAGVLVEA-  415 (443)
T ss_pred             CCceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcChH-HHHHHHHhcC-CCeEEEEE-----eChHHhhccHHHHhhC-
Confidence            46899999999765432  1 24699999999999986 5778998886 89999999     9999999998887532 


Q ss_pred             ccccccccCCCCCCCCCc
Q 044572          427 SVQIGSKTNSENQSLPQT  444 (457)
Q Consensus       427 ~~~~~~~~~~~~~~~p~~  444 (457)
                      +.++  ......+.+|+|
T Consensus       416 gY~l--~~i~~~DmFP~T  431 (443)
T PRK13168        416 GYRL--KRAGMLDMFPHT  431 (443)
T ss_pred             CcEE--EEEEEeccCCCC
Confidence            2222  222356788876

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=100.00  E-value=3.3e-49  Score=401.57  Aligned_cols=326  Identities=16%  Similarity=0.149  Sum_probs=243.3

Q ss_pred             CccCccCccCCchHH--H--HHHHHHHHhcCCCceecccCCCccceeeeeEEeeecCCCceEEEeecCccceEeCCCCcc
Q 044572           60 CSGCTHEFNLHRPII--V--DEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKA  135 (457)
Q Consensus        60 CGGC~lqh~~~~~~~--~--~~~~~~l~r~g~~~~~~~s~~~~~YRnR~~l~v~~~~g~~~vGf~~~~s~~iv~i~~C~i  135 (457)
                      ||||+||| ++|+.|  .  +.+.++|+|+|....++....+||||||++|++....|+..+|||+++||++|+|++|++
T Consensus         1 CGGC~~qh-l~y~~Ql~~K~~~v~~~l~r~~~~~~~i~~s~~~~YRnr~~~~v~~~~g~~~~G~~~~~s~~vv~i~~C~i   79 (362)
T PRK05031          1 MTPECLPP-EQYEAQLAEKVARLKELFAPFSAPEPEVFRSPPSHYRMRAEFRIWHEGDDLYYAMFDQQTKQRIRIDQFPI   79 (362)
T ss_pred             CCCccCCC-CCHHHHHHHHHHHHHHHHHhcCCCCCCcccCCcccccceEEEEEEEeCCCEEEEEEeCCCCCeEECccCcC
Confidence            99999999 555444  3  458899999874222332224799999999999653366789999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCccccccCCcEEEEEEeCCCCCCCCCchhHHHH
Q 044572          136 HHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL  215 (457)
Q Consensus       136 ~~p~i~~~l~~l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~~~~~~v~v~lv~~~~~~~~~~~~~~~~l  215 (457)
                      ++|.+++++..++++++..+.     ..+.  ++++  ..+.         . .+|++|+++++... ..    +.++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~--~~~~---------~-~~g~~~v~l~~~~~-~~----~~~~~~  135 (362)
T PRK05031         80 ASELINALMPALLAALRANPV-----LRHK--LFQV--DFLS---------T-LSGEILVSLLYHKK-LD----EEWEQA  135 (362)
T ss_pred             CCHHHHHHHHHHHHHHHhcCc-----hheE--EEEE--EEEe---------c-CCCCEEEEEEECCC-CC----hHHHHH
Confidence            999999999999998765432     1111  2232  1111         0 36788988876422 11    123344


Q ss_pred             HHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccCeEEEee--ee--EEEEECCCCCCCCCHHHHHHHHHH
Q 044572          216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENV--GG--IDISLAPSSFGQANTRAFDILLRK  291 (457)
Q Consensus       216 ~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~--~g--~~~~i~~~~FfQ~n~~~~~~l~~~  291 (457)
                      ++.+..      +.+.+ ++   .+.       +....+++|..++.+++  +|  +.|++++++|||+|+.+++.|+++
T Consensus       136 ~~~l~~------~~~~~-~i---~~~-------~~~~~~~~G~~~i~e~l~~~~~~~~~~~~~~sF~Q~N~~~~e~l~~~  198 (362)
T PRK05031        136 AKALRD------ALFNV-HL---IGR-------SRKQKIVLDQDYVDERLPVAGREFIYRQVENSFTQPNAAVNEKMLEW  198 (362)
T ss_pred             HHHHHH------HCCCc-EE---Eec-------CCCcEEEcCCCEEEEEEecCCcEEEEEeCCCCeeccCHHHHHHHHHH
Confidence            444432      12333 33   111       12235678999999988  56  899999999999999999999999


Q ss_pred             HHhhCC-CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc--
Q 044572          292 LQKYVP-YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL--  368 (457)
Q Consensus       292 i~~~~~-~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~--  368 (457)
                      +.+++. .+.+|||||||+|+||+.+|+.  +++|+|||+++.|++.|++|++.+   +.+|++|+++|+.+.+..+.  
T Consensus       199 v~~~~~~~~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~---~~~~v~~~~~d~~~~l~~~~~~  273 (362)
T PRK05031        199 ALDATKGSKGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAAN---GIDNVQIIRMSAEEFTQAMNGV  273 (362)
T ss_pred             HHHHhhcCCCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHh---CCCcEEEEECCHHHHHHHHhhc
Confidence            999875 2357999999999999999964  569999999999999999999884   34689999999987653321  


Q ss_pred             -------------CCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccccccccC
Q 044572          369 -------------VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTN  435 (457)
Q Consensus       369 -------------~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  435 (457)
                                   ..||+||+||||.|+++++++.|.+   ++++||||     |++.+..||+..+..  +  +.-...
T Consensus       274 ~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvS-----C~p~tlarDl~~L~~--g--Y~l~~v  341 (362)
T PRK05031        274 REFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYIS-----CNPETLCENLETLSQ--T--HKVERF  341 (362)
T ss_pred             ccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEE-----eCHHHHHHHHHHHcC--C--cEEEEE
Confidence                         1489999999999999999999976   58999999     999999999998752  2  222223


Q ss_pred             CCCCCCCCc
Q 044572          436 SENQSLPQT  444 (457)
Q Consensus       436 ~~~~~~p~~  444 (457)
                      ...+.+|+|
T Consensus       342 ~~~DmFPqT  350 (362)
T PRK05031        342 ALFDQFPYT  350 (362)
T ss_pred             EEcccCCCC
Confidence            366888887

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=100.00  E-value=2e-45  Score=372.33  Aligned_cols=317  Identities=22%  Similarity=0.344  Sum_probs=208.7

Q ss_pred             CCchHHH--HHHHHHHHhcCCCceecccCCCccceeeeeEEeeecCCCceEEEeecCccceEeCCCCccCChhHHHHHHH
Q 044572           69 LHRPIIV--DEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVEL  146 (457)
Q Consensus        69 ~~~~~~~--~~~~~~l~r~g~~~~~~~s~~~~~YRnR~~l~v~~~~g~~~vGf~~~~s~~iv~i~~C~i~~p~i~~~l~~  146 (457)
                      |++|+..  +.+.++|++++..+.++....+|+||||++|+|+...++..+|||+++||++|+|++|++++|.||++++.
T Consensus         2 Y~~QL~~K~~~l~~~l~~~~~~~~~i~~s~~~~YRnKa~~~v~~~~~~~~~g~~~~~s~~iv~i~~C~i~~~~In~~l~~   81 (352)
T PF05958_consen    2 YEKQLEFKQQILKELLRRIGKLEIEIIASPPWGYRNKARFPVRKDKGKLILGFFRRGSHEIVDIEECPIADPEINKLLPA   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHTTT-----EEE---SSS-BSEEEEEEEECTTCEEEEEEECTTS-EEE-S--TTB-HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCCCceecCCChhcccEEEEEEEEcCCcEEEEEEecCCCceEECCCCccccHHHHHHHHH
Confidence            3444432  45888999987655555555579999999999988777888999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCccccccCCcEEEEEEeCCCCCCCCCchhHHHHHHHHHHcCCCC
Q 044572          147 LRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSR  226 (457)
Q Consensus       147 l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~~~~~~v~v~lv~~~~~~~~~~~~~~~~l~~~l~~~~~~~  226 (457)
                      ++++++...       .-...++++.+.  .+          .++++||+|+++.. .    .+........+...    
T Consensus        82 l~~~l~~~~-------~l~~~l~~i~~~--~~----------~~~ei~V~lv~~~~-l----~~~~~~~~~~L~~~----  133 (352)
T PF05958_consen   82 LRELLKKNE-------KLKNKLFHIEFL--ST----------LSGEIMVTLVTHKP-L----DDEWKEALEALAQN----  133 (352)
T ss_dssp             HHHHHTTSH-------HHHTCEEEEEEE--EE----------TTCEEEEEEEESS--------HHHHHHHHHHHHT----
T ss_pred             HHHHHhhhh-------hhhceeeEEEEE--Ee----------cCCCEEEEEEeCCc-C----CHHHHHHHHhhhhc----
Confidence            999985321       011235555332  11          46889999888643 1    12333444444421    


Q ss_pred             CCCceeEEEEEEeecCCCCcccCCeEEEeeccCeEEEee----eeEEEEECCCCCCCCCHHHHHHHHHHHHhhCCC-CCe
Q 044572          227 SREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENV----GGIDISLAPSSFGQANTRAFDILLRKLQKYVPY-GAS  301 (457)
Q Consensus       227 ~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~----~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~~-~~~  301 (457)
                            ..++...+.        .....++|..++.+.+    .+++|+++|++|||+|+.+++.|++.+.+++.. +..
T Consensus       134 ------~~~~ii~~~--------~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~  199 (352)
T PF05958_consen  134 ------LNVNIIGRS--------KKTKIVLGQDYVEERLEIQDKGLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSKGD  199 (352)
T ss_dssp             ------EEEEEECCC--------TCEEEECS-CEEECE--ECCCTEEEEEETTS---SBHHHHHHHHHHHHHHCTT-TTE
T ss_pred             ------ceEEEEEcC--------CccEEEccCcEEeeEeeeeccceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCCCc
Confidence                  122211111        2233445555554433    478999999999999999999999999999862 348


Q ss_pred             EEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc--------------
Q 044572          302 VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW--------------  367 (457)
Q Consensus       302 vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~--------------  367 (457)
                      |||||||+|+||+++|..  +++|+|||++++|+++|++|++.   |+.+|++|++++++++...+              
T Consensus       200 vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~---N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~  274 (352)
T PF05958_consen  200 VLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKL---NGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDL  274 (352)
T ss_dssp             EEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHH---TT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-G
T ss_pred             EEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHH---cCCCcceEEEeeccchhHHHHhhHHHHhhhhhhh
Confidence            999999999999999965  66999999999999999999998   45689999999886543211              


Q ss_pred             -cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccccccccCCCCCCCCCc
Q 044572          368 -LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSENQSLPQT  444 (457)
Q Consensus       368 -~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  444 (457)
                       ...+|+||+||||+|+++.+++.+.+.   ++|||||     |+|.++.||+..+..  +  +.-......+.+|+|
T Consensus       275 ~~~~~d~vilDPPR~G~~~~~~~~~~~~---~~ivYvS-----CnP~tlaRDl~~L~~--~--y~~~~v~~~DmFP~T  340 (352)
T PF05958_consen  275 KSFKFDAVILDPPRAGLDEKVIELIKKL---KRIVYVS-----CNPATLARDLKILKE--G--YKLEKVQPVDMFPQT  340 (352)
T ss_dssp             GCTTESEEEE---TT-SCHHHHHHHHHS---SEEEEEE-----S-HHHHHHHHHHHHC--C--EEEEEEEEE-SSTTS
T ss_pred             hhcCCCEEEEcCCCCCchHHHHHHHhcC---CeEEEEE-----CCHHHHHHHHHHHhh--c--CEEEEEEEeecCCCC
Confidence             125799999999999999999988653   7999999     999999999988753  2  222222356788876

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.1e-43  Score=357.24  Aligned_cols=356  Identities=18%  Similarity=0.212  Sum_probs=269.6

Q ss_pred             ccCCCCCCCcCccCccCccCCchHHHHHHHH---HHHhcC---------CCc----eecccCCCccceeeeeEEeee-cC
Q 044572           50 CALQCPHFQSCSGCTHEFNLHRPIIVDEATD---FFKSIG---------LLD----FTFDSCRLYGWRCRAKLAVRG-TS  112 (457)
Q Consensus        50 v~p~C~~f~~CGGC~lqh~~~~~~~~~~~~~---~l~r~g---------~~~----~~~~s~~~~~YRnR~~l~v~~-~~  112 (457)
                      +..||.+..-|+||-++. ..+..+++.+..   .+.+.-         +.+    ..++||...|||||++|.++. ..
T Consensus       126 ~Vtpl~~~Sy~~qL~lk~-~~~~~vl~kl~~~~~~li~~kv~~~~~~~~~~d~~Le~I~pSp~~~~yrnKceFsvg~~~~  204 (534)
T KOG2187|consen  126 VVTPLEYLSYGEQLELKQ-LSQEAVLQKLERLIGDLIRAKVAFLGPQYHLHDRVLEVIIPSPIQNGYRNKCEFSVGQLLD  204 (534)
T ss_pred             hcceeeeeccccchhhhh-ccHHHHHHHHHHHHHHHHhheeecccccchhhcccccccccCccccCchhcceeecccccc
Confidence            557888888999999876 333323322222   222211         111    246799999999999999974 34


Q ss_pred             CCc-eEEEee----cCccceEeCCCCccCChhHHHHHHHHHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCcccc
Q 044572          113 TSP-LIGLYQ----EGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASER  187 (457)
Q Consensus       113 g~~-~vGf~~----~~s~~iv~i~~C~i~~p~i~~~l~~l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~  187 (457)
                      |+. .+||+.    .|.+.++.--+|.++++..+.++..++++++++.+.||++..++|+||+|  +||+.         
T Consensus       205 g~~~~vgf~lg~~~~g~~~~~~pvd~~llp~~~~~V~s~~Q~f~R~t~l~P~~~~~~~G~wk~L--tVRt~---------  273 (534)
T KOG2187|consen  205 GEDDTVGFVLGRFSKGAFAVVAPVDVKLLPEIMSQVASAVQEFYRETKLSPYDDFPKGGFWKQL--TVRTE---------  273 (534)
T ss_pred             CCcCceeeeeeeeecCceEEeccccccccChHHHHHHHHHHHHHhcCCCccccccCCCCceeee--EEEec---------
Confidence            444 666664    45667776667778889999999999999999999999999999999996  55643         


Q ss_pred             ccCCcEEEEEEeCCCCCCCCCc-hhHHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccCeEEEeee
Q 044572          188 YRNGKVQITLVWNSRNEKSPNS-DKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVG  266 (457)
Q Consensus       188 ~~~~~v~v~lv~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~  266 (457)
                       ..+..|.++.+..-.+..... +..+.+.+++....+   ....+..+|+.-.....+.-.+....++.|+.+++|.++
T Consensus       274 -~~~~~~~il~i~~~~l~~e~l~e~~~ki~~~f~~~~~---~a~~l~~l~~q~~~~ts~~~~~~~~~l~~~~~~I~E~l~  349 (534)
T KOG2187|consen  274 -FRGGAMAILTIHPCKLATEELTELKKKIEQRFLSGPG---FASGLRVLYLQESGHTSDGQEGKPLQLVGGDPYITESLL  349 (534)
T ss_pred             -ccCceEEEEEEEeecccHHHHHHHHHHHHHHHhcccc---cccceeEEEEecccccccCCCCCCeEEEccccEEEeecC
Confidence             456667776655432221111 223334444432211   122355545432222223234567889999999999999


Q ss_pred             eEEEEECCCCCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          267 GIDISLAPSSFGQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       267 g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      |++|+|+|++|||+|+.++|.||+.|.+++.  .++.++|+|||||+||+.+|+.  +++|+|||++++|+++|++||+.
T Consensus       350 ~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~  427 (534)
T KOG2187|consen  350 GLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQI  427 (534)
T ss_pred             CeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchh
Confidence            9999999999999999999999999999864  6788999999999999999964  67999999999999999999998


Q ss_pred             CCCCCCCcEEEEEccCCcCcccccC----Ccc-EEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhH
Q 044572          345 LPKSVDGNISWHNADNSIEPLSWLV----GSD-VLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPW  419 (457)
Q Consensus       345 ~~~~~~~nv~~~~~d~~~~~~~~~~----~~D-~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~  419 (457)
                         |+++|++|++|-+++.+..+..    .-+ ++|+||||+|++..++++|+.+..+.+++|+|     |++++..+++
T Consensus       428 ---NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvS-----Cn~~t~ar~v  499 (534)
T KOG2187|consen  428 ---NGISNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVS-----CNPHTAARNV  499 (534)
T ss_pred             ---cCccceeeeecchhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEE-----cCHHHhhhhH
Confidence               5679999999988887655432    235 89999999999999999999998899999999     9999999999


Q ss_pred             HHHHHHhccccc
Q 044572          420 ILRAKEASVQIG  431 (457)
Q Consensus       420 ~~~~~~~~~~~~  431 (457)
                      +++|+....+..
T Consensus       500 ~~lc~~~~~~~~  511 (534)
T KOG2187|consen  500 IDLCSSPKYRLK  511 (534)
T ss_pred             HHhhcCcccccc
Confidence            999998775443

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=100.00  E-value=1.4e-41  Score=340.13  Aligned_cols=300  Identities=19%  Similarity=0.290  Sum_probs=243.8

Q ss_pred             EeeecCCCceEEEeecCccceEeCCCCccCChhHHHHHHHHHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCccc
Q 044572          107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASE  186 (457)
Q Consensus       107 ~v~~~~g~~~vGf~~~~s~~iv~i~~C~i~~p~i~~~l~~l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~  186 (457)
                      .|++..++..+|||++++ .+|+|++||+++|.++++++.+++++++.++++|++..++|.||++.++..          
T Consensus         2 ~~~~~~~~~~~G~~~~~~-~~v~i~~C~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~lr~~~ir~~----------   70 (315)
T PRK03522          2 VVSGSVERPLLGILHRDG-TPVDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTES----------   70 (315)
T ss_pred             eeccccCccEEeEEcCCC-cEEcCCCCcCCCHHHHHHHHHHHHHHHHcCCCCCcCCCCCceeeEEEEEee----------
Confidence            345566778899999866 679999999999999999999999999999999999999999999765431          


Q ss_pred             cccCCcEEEEEEeCCCCCCCCCchhHHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccCeEEEeee
Q 044572          187 RYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVG  266 (457)
Q Consensus       187 ~~~~~~v~v~lv~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~  266 (457)
                       ..++++|++++++....    .+....+.+.+..      ..+.+.+++++++++..+.+++.+...++|..++.++++
T Consensus        71 -~~~~~~~v~l~~~~~~~----~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~g~~~~~l~g~~~~~~~~~  139 (315)
T PRK03522         71 -QSDGELMLRFVLRSETK----LARLRRALPWLQA------QLPQLKVISVNIQPVHMAILEGEEEIFLTEQQALPERFN  139 (315)
T ss_pred             -cCCCCEEEEEEECCCcc----chhHHHHHHHHHH------HCCCCEEEEEEECCCCCCcccCCceEEEeCCCeEEEEEC
Confidence             14688999887654211    0112233332321      235678888899998888888888888999999999999


Q ss_pred             eEEEEECCCCCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          267 GIDISLAPSSFGQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       267 g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      |..|.+++.+|||+|..+++.|++.+.+++.  ++.+|||+|||+|.+++.+|..  ..+|+|||+++.|++.|++|++.
T Consensus       140 ~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~  217 (315)
T PRK03522        140 GVPLFIRPQSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAE  217 (315)
T ss_pred             CEEEEECCCeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999888764  5789999999999999999975  35999999999999999999988


Q ss_pred             CCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHH
Q 044572          345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAK  424 (457)
Q Consensus       345 ~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~  424 (457)
                      +   +.+|++|+++|+.++.......||+||+||||.|+.+++++.|.... +++++|+|     |++.++.|++..+  
T Consensus       218 ~---~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~~~~~~~~l~~~~-~~~ivyvs-----c~p~t~~rd~~~l--  286 (315)
T PRK03522        218 L---GLTNVQFQALDSTQFATAQGEVPDLVLVNPPRRGIGKELCDYLSQMA-PRFILYSS-----CNAQTMAKDLAHL--  286 (315)
T ss_pred             c---CCCceEEEEcCHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHcC-CCeEEEEE-----CCcccchhHHhhc--
Confidence            4   34689999999987543333469999999999999999999999986 89999999     9999999998776  


Q ss_pred             HhccccccccCCCCCCCCCc
Q 044572          425 EASVQIGSKTNSENQSLPQT  444 (457)
Q Consensus       425 ~~~~~~~~~~~~~~~~~p~~  444 (457)
                       .+  +.-......+.+|+|
T Consensus       287 -~~--y~~~~~~~~DmFP~T  303 (315)
T PRK03522        287 -PG--YRIERVQLFDMFPHT  303 (315)
T ss_pred             -cC--cEEEEEEEeccCCCC
Confidence             11  222222356788887

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=100.00  E-value=2.1e-41  Score=343.13  Aligned_cols=310  Identities=19%  Similarity=0.190  Sum_probs=228.9

Q ss_pred             HHHHHHHHhcCCCc-eecccCCCccceeeeeEEeeecCCCceEEEeecCccceEeCCCCccCChhHHHHHHHHHHHHHhc
Q 044572           76 DEATDFFKSIGLLD-FTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKEL  154 (457)
Q Consensus        76 ~~~~~~l~r~g~~~-~~~~s~~~~~YRnR~~l~v~~~~g~~~vGf~~~~s~~iv~i~~C~i~~p~i~~~l~~l~~~l~~~  154 (457)
                      +.+.++|+|+|... ..++++ +||||||++|++....|++.+|||+++||.+|++++|++++|.+++++..++++++..
T Consensus        11 ~~v~~~l~r~~~~~~~v~~s~-~~~YRnr~~~~~~~~~g~~~~G~~~~~s~~iv~i~~C~i~~~~i~~~~~~~~~~l~~~   89 (353)
T TIGR02143        11 SRLKDLFAPFDAPEPEVFESP-DKHYRMRAEFRIWHEGDDLYYAMFDQQTKSKIRVDQFPAASELINRLMPALIAALRQN   89 (353)
T ss_pred             HHHHHHHHhcCCCcCCCcCCc-cccccceEEEEEEecCCcEEEEEEeCCCCCeEECCCCcCCCHHHHHHHHHHHHHHHhC
Confidence            45788999987421 123455 8999999999996435667899999999999999999999999999999999987654


Q ss_pred             CCCCcccCCCCCceeEEEEEEEeccCCCCccccccCCcEEEEEEeCCCCCCCCCchhHHHHHHHHHHcCCCCCCCceeEE
Q 044572          155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHS  234 (457)
Q Consensus       155 ~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~~~~~~v~v~lv~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~s  234 (457)
                      +.     ..++  .+++.+..+            .++++|+++++.. ..    .+.+..+...+...      ...+  
T Consensus        90 ~~-----~~~~--~~~~~~~~~------------~~~~~~v~l~~~~-~~----~~~~~~~~~~~~~~------~~~~--  137 (353)
T TIGR02143        90 PA-----LRHK--LFQVDFLTT------------LSGEALVSLLYHK-QL----DDEWRQAAEALKDI------KLNV--  137 (353)
T ss_pred             Cc-----ccce--eEEEEEEec------------CCCCEEEEEEeCC-cc----cHHHHHHHHHHHHh------CCce--
Confidence            32     2222  223321111            3678888887431 11    11122222222110      0011  


Q ss_pred             EEEEeecCCCCcccCCeEEEeeccCeEEEee--ee--EEEEECCCCCCCCCHHHHHHHHHHHHhhCC-CCCeEEEEcccc
Q 044572          235 VWANFQTSTNNVIFGNRWRHLLGETDFWENV--GG--IDISLAPSSFGQANTRAFDILLRKLQKYVP-YGASVTDLYAGA  309 (457)
Q Consensus       235 i~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~--~g--~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~-~~~~vLDl~cG~  309 (457)
                         +++..      +.+..+++|..++.+++  +|  ++|.+++++|||+|..+++.|++.+.+++. .+.+|||||||+
T Consensus       138 ---~~~~~------~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~  208 (353)
T TIGR02143       138 ---NLIGR------ARKKKIVLDQDYVDETLPVAGREFIYRQVENSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGN  208 (353)
T ss_pred             ---EEEEc------CCCcEEEcCCCEEEEEEecCCeEEEEEECCCCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccc
Confidence               11211      12346678998888877  56  899999999999999999999999999875 345799999999


Q ss_pred             cHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc---------c------CCccEE
Q 044572          310 GVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW---------L------VGSDVL  374 (457)
Q Consensus       310 G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~---------~------~~~D~v  374 (457)
                      |+||+.+|+.  +++|+|||++++|++.|++|++.+   +.+|++|+++|+.+++...         .      ..||+|
T Consensus       209 G~~sl~la~~--~~~v~~vE~~~~av~~a~~n~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  283 (353)
T TIGR02143       209 GNFSLALAQN--FRRVLATEIAKPSVNAAQYNIAAN---NIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTI  283 (353)
T ss_pred             cHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHc---CCCcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEE
Confidence            9999999975  469999999999999999999983   3568999999998765421         0      137999


Q ss_pred             EECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccccccccCCCCCCCCCc
Q 044572          375 VVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSENQSLPQT  444 (457)
Q Consensus       375 i~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  444 (457)
                      |+||||.|+.+++++.|.+   ++++||||     |++.++.||...+...    +.-......+.+|+|
T Consensus       284 ~lDPPR~G~~~~~l~~l~~---~~~ivYvs-----C~p~tlaRDl~~L~~~----Y~l~~v~~~DmFP~T  341 (353)
T TIGR02143       284 FVDPPRAGLDPDTCKLVQA---YERILYIS-----CNPETLKANLEQLSET----HRVERFALFDQFPYT  341 (353)
T ss_pred             EECCCCCCCcHHHHHHHHc---CCcEEEEE-----cCHHHHHHHHHHHhcC----cEEEEEEEcccCCCC
Confidence            9999999999999999876   58999999     9999999999887521    322223356788877

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.83  E-value=3.1e-19  Score=181.10  Aligned_cols=195  Identities=15%  Similarity=0.095  Sum_probs=134.9

Q ss_pred             eEEEeecc---CeEEEeeeeEEEEECC-----CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCC
Q 044572          251 RWRHLLGE---TDFWENVGGIDISLAP-----SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKC  322 (457)
Q Consensus       251 ~~~~l~G~---~~~~~~~~g~~~~i~~-----~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~  322 (457)
                      ...+++|.   ..+...++|.+|.++.     ++||.+++..-    .++.+++. |++|||+||.||+||+++|. +||
T Consensus       167 ~~~~~~g~~~~~~~~i~E~g~kf~v~~~~g~kTGfFlDqR~~R----~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~-gGA  240 (393)
T COG1092         167 RSQYLKGEEAPEEVVIEENGVKFLVDLVDGLKTGFFLDQRDNR----RALGELAA-GKRVLNLFSYTGGFSVHAAL-GGA  240 (393)
T ss_pred             cccccccccCCCcEEEEeCCeEEEEecCCcccceeeHHhHHHH----HHHhhhcc-CCeEEEecccCcHHHHHHHh-cCC
Confidence            34456663   2455677899999984     79998877654    34445565 99999999999999999996 788


Q ss_pred             CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc---CCccEEEECCCCCCccH-----------HHH
Q 044572          323 RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDS-----------SLV  388 (457)
Q Consensus       323 ~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~---~~~D~vi~DPPR~Gl~~-----------~v~  388 (457)
                      ++|++||+|..+++.|++|++.|+. ..+.+.|+++|+++++....   .+||+||+|||..+-++           +++
T Consensus       241 ~~vt~VD~S~~al~~a~~N~~LNg~-~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~  319 (393)
T COG1092         241 SEVTSVDLSKRALEWARENAELNGL-DGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLN  319 (393)
T ss_pred             CceEEEeccHHHHHHHHHHHHhcCC-CccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHH
Confidence            9999999999999999999998532 23568999999999876553   37999999999543222           233


Q ss_pred             HHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccccc----cccCCCCC---CCCCceeeeecccc
Q 044572          389 HALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIG----SKTNSENQ---SLPQTLIYISCGWE  453 (457)
Q Consensus       389 ~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~p~~~~yl~~~~~  453 (457)
                      ....++..+++++++|+|++.-....+.+..+..+........    ..+..||+   ..|++. |||+.|-
T Consensus       320 ~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~~~~~~~D~p~~~~~~~~~-ylk~~f~  390 (393)
T COG1092         320 DLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIEGEGQPPDHPRNAQIPETL-YLKALFL  390 (393)
T ss_pred             HHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEeeccCCCCCccccccCcchh-eeeeeeE
Confidence            3333433477777777544444444444444444444433332    22234664   567777 9998764

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.80  E-value=1.2e-18  Score=178.84  Aligned_cols=188  Identities=15%  Similarity=0.128  Sum_probs=131.4

Q ss_pred             eEEEeeccC---eEEEeeeeEEEEECC-----CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCC
Q 044572          251 RWRHLLGET---DFWENVGGIDISLAP-----SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKC  322 (457)
Q Consensus       251 ~~~~l~G~~---~~~~~~~g~~~~i~~-----~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~  322 (457)
                      ....++|+.   .+..+++|++|.++.     ++||-.++..-. ++   ..+ .++++|||+|||+|.|++.++. .++
T Consensus       170 ~~~~~~G~~~~~~~~v~E~g~~f~vdl~~g~ktG~flDqr~~R~-~~---~~~-~~g~rVLDlfsgtG~~~l~aa~-~ga  243 (396)
T PRK15128        170 TQGPVTGELPPALLPIEEHGMKLLVDIQGGHKTGYYLDQRDSRL-AT---RRY-VENKRVLNCFSYTGGFAVSALM-GGC  243 (396)
T ss_pred             cceEEecCCCCccEEEEECCEEEEEecccccccCcChhhHHHHH-HH---HHh-cCCCeEEEeccCCCHHHHHHHh-CCC
Confidence            456788874   356678999999985     578877654332 22   222 3588999999999999998775 567


Q ss_pred             CEEEEEeCCHHHHHHHHHHHhhCCCCCC-CcEEEEEccCCcCcccc---cCCccEEEECCCCCCccHH-----------H
Q 044572          323 RSVKCVEINKESQLSFEKTVSRLPKSVD-GNISWHNADNSIEPLSW---LVGSDVLVVDPPRKGLDSS-----------L  387 (457)
Q Consensus       323 ~~V~gVE~~~~av~~A~~Na~~~~~~~~-~nv~~~~~d~~~~~~~~---~~~~D~vi~DPPR~Gl~~~-----------v  387 (457)
                      .+|++||+|+.+++.|++|++.|+  .. ++++++++|+++++..+   ...||+||+|||+.--++.           +
T Consensus       244 ~~V~~VD~s~~al~~a~~N~~~Ng--l~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l  321 (396)
T PRK15128        244 SQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDI  321 (396)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcC--CCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHH
Confidence            899999999999999999999843  22 47999999998876443   2479999999997433221           1


Q ss_pred             H-HHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccccc--------cccCCCC---CCCCCceeeeeccc
Q 044572          388 V-HALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIG--------SKTNSEN---QSLPQTLIYISCGW  452 (457)
Q Consensus       388 ~-~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---~~~p~~~~yl~~~~  452 (457)
                      . .++..+++.+.+++.|     |+++....+|.+...+++.+.+        ..+..||   .++||+. |||+.+
T Consensus       322 ~~~a~~lLk~gG~lv~~s-----cs~~~~~~~f~~~v~~aa~~~~~~~~~l~~~~~~~DhP~~~~~pe~~-YLK~~~  392 (396)
T PRK15128        322 NMLAIQLLNPGGILLTFS-----CSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEGL-YLKGFA  392 (396)
T ss_pred             HHHHHHHcCCCeEEEEEe-----CCCcCCHHHHHHHHHHHHHHcCCeEEEEEEcCCCCCCCCCCCCCCcC-CceEEE
Confidence            1 2233445445555565     7777666667776666554432        2223477   4678888 999865

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.76  E-value=4e-18  Score=166.77  Aligned_cols=171  Identities=16%  Similarity=0.109  Sum_probs=113.5

Q ss_pred             CCeEEEeeccC--eEEEeeeeEEEEECC-----CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC
Q 044572          249 GNRWRHLLGET--DFWENVGGIDISLAP-----SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK  321 (457)
Q Consensus       249 ~~~~~~l~G~~--~~~~~~~g~~~~i~~-----~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~  321 (457)
                      +.....++|+.  .+...++|++|.++.     ++||-..++.-.    ++.++. .|++||||||.||+||+.++. +|
T Consensus        72 ~~~~~~l~G~~~~~~~v~E~gl~f~v~l~~gqktGlFlDqR~nR~----~v~~~~-~gkrvLnlFsYTGgfsv~Aa~-gG  145 (286)
T PF10672_consen   72 GAPSEVLYGEPPEFFTVEENGLKFRVDLTDGQKTGLFLDQRENRK----WVRKYA-KGKRVLNLFSYTGGFSVAAAA-GG  145 (286)
T ss_dssp             T-EEEEEESS-SSEEEEEETTEEEEEESSSSSSTSS-GGGHHHHH----HHHHHC-TTCEEEEET-TTTHHHHHHHH-TT
T ss_pred             CCCceEEecCCCCceEEEECCEEEEEEcCCCCcceEcHHHHhhHH----HHHHHc-CCCceEEecCCCCHHHHHHHH-CC
Confidence            34566788874  455678999999984     799998877643    233344 589999999999999999886 78


Q ss_pred             CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc--cCCccEEEECCCCC-----CccH---HHHHHH
Q 044572          322 CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW--LVGSDVLVVDPPRK-----GLDS---SLVHAL  391 (457)
Q Consensus       322 ~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~--~~~~D~vi~DPPR~-----Gl~~---~v~~~l  391 (457)
                      +++|+.||.|+.+++.|++|++.|+. ..++++|+++|+++++...  ..+||+||+|||..     .+..   +++..+
T Consensus       146 A~~v~~VD~S~~al~~a~~N~~lNg~-~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a  224 (286)
T PF10672_consen  146 AKEVVSVDSSKRALEWAKENAALNGL-DLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRA  224 (286)
T ss_dssp             ESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCC-CccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence            89999999999999999999998542 2368999999999876542  35899999999942     2222   233333


Q ss_pred             HhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhcccc
Q 044572          392 QSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQI  430 (457)
Q Consensus       392 ~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~  430 (457)
                      .++-.+++++++++    |+++.....|++.++.++.+.
T Consensus       225 ~~ll~~gG~l~~~s----cs~~i~~~~l~~~~~~~a~~~  259 (286)
T PF10672_consen  225 MKLLKPGGLLLTCS----CSHHISPDFLLEAVAEAAREV  259 (286)
T ss_dssp             HHTEEEEEEEEEEE------TTS-HHHHHHHHHHHHHHC
T ss_pred             HHhcCCCCEEEEEc----CCcccCHHHHHHHHHHhCccc
Confidence            33333666655554    555555556666666555444

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.74  E-value=4.8e-17  Score=151.96  Aligned_cols=134  Identities=22%  Similarity=0.223  Sum_probs=100.6

Q ss_pred             eeEEEEECCCCCCCCCHH-HHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          266 GGIDISLAPSSFGQANTR-AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       266 ~g~~~~i~~~~FfQ~n~~-~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      .|.++.+.++..+....+ ..+.+++.+... .++.+|||||||+|.+++.++.+ ++.+|++||+++++++.|++|++.
T Consensus        21 ~g~~l~~~~~~~~Rp~~d~v~e~l~~~l~~~-~~~~~vLDl~~GsG~l~l~~lsr-~a~~V~~vE~~~~a~~~a~~Nl~~   98 (199)
T PRK10909         21 RGRKLPVPDSPGLRPTTDRVRETLFNWLAPV-IVDARCLDCFAGSGALGLEALSR-YAAGATLLEMDRAVAQQLIKNLAT   98 (199)
T ss_pred             CCCEeCCCCCCCcCcCCHHHHHHHHHHHhhh-cCCCEEEEcCCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHH
Confidence            577787766544433322 223344443322 25789999999999999975543 467999999999999999999998


Q ss_pred             CCCCCCCcEEEEEccCCcCcccccCCccEEEECCC-CCCccHHHHHHHHhc--CCCCcEEEEe
Q 044572          345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPP-RKGLDSSLVHALQSI--GSAERKAKSL  404 (457)
Q Consensus       345 ~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPP-R~Gl~~~v~~~l~~~--~~~~~ivyvs  404 (457)
                      +   +.++++++++|+.+.+......||+||+||| +.|+..++++.|...  -.+++++|++
T Consensus        99 ~---~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve  158 (199)
T PRK10909         99 L---KAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE  158 (199)
T ss_pred             h---CCCcEEEEEchHHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence            4   2458999999998755332346999999999 789999999999874  1479999999

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.69  E-value=2.2e-16  Score=161.45  Aligned_cols=124  Identities=16%  Similarity=0.096  Sum_probs=103.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCC---CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCC
Q 044572          275 SSFGQANTRAFDILLRKLQKYVP---YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDG  351 (457)
Q Consensus       275 ~~FfQ~n~~~~~~l~~~i~~~~~---~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~  351 (457)
                      ..|||.|...++.|...+.+.+.   ++.+|||+|||+|.+|+.+|...++.+|+++|+|+.|++.+++|++.|   +.+
T Consensus        31 ~vFyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N---~~~  107 (382)
T PRK04338         31 PVFYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN---GLE  107 (382)
T ss_pred             CeeeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh---CCC
Confidence            58999999999998888877654   236899999999999999998766779999999999999999999984   346


Q ss_pred             cEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHH-HHhcCCCCcEEEEec
Q 044572          352 NISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHA-LQSIGSAERKAKSLS  405 (457)
Q Consensus       352 nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~-l~~~~~~~~ivyvs~  405 (457)
                      +++++++|+...+.. ...||+|++|||  |....+++. +..++ +++++|+|+
T Consensus       108 ~~~v~~~Da~~~l~~-~~~fD~V~lDP~--Gs~~~~l~~al~~~~-~~gilyvSA  158 (382)
T PRK04338        108 NEKVFNKDANALLHE-ERKFDVVDIDPF--GSPAPFLDSAIRSVK-RGGLLCVTA  158 (382)
T ss_pred             ceEEEhhhHHHHHhh-cCCCCEEEECCC--CCcHHHHHHHHHHhc-CCCEEEEEe
Confidence            788999999775532 356999999998  776777777 66665 899999983

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.68  E-value=6.7e-16  Score=149.81  Aligned_cols=119  Identities=21%  Similarity=0.283  Sum_probs=96.3

Q ss_pred             eEEEeeccCeEEEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCC---CCCeEEEEcccccHHHHHHHhhCCCCEEEE
Q 044572          251 RWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP---YGASVTDLYAGAGVIGLSLAAARKCRSVKC  327 (457)
Q Consensus       251 ~~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~---~~~~vLDl~cG~G~~sl~lA~~~~~~~V~g  327 (457)
                      +.++|.|...    +.|++|.+++++|+  |+..++.|++.+.+++.   ...+|||+|||+|.+++.++...+..+|+|
T Consensus        42 Pl~yi~g~~~----f~g~~~~v~~~vf~--pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~  115 (251)
T TIGR03704        42 PLEHVLGWAE----FCGLRIAVDPGVFV--PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHA  115 (251)
T ss_pred             CHHHhcccCe----EcCeEEEECCCCcC--CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEE
Confidence            4555666654    57899999999998  78889999999887654   235899999999999999997654568999


Q ss_pred             EeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc-ccCCccEEEECCCCC
Q 044572          328 VEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS-WLVGSDVLVVDPPRK  381 (457)
Q Consensus       328 VE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~-~~~~~D~vi~DPPR~  381 (457)
                      +|+|+.|++.|++|++.+  +    ++++++|+.+.+.. ..+.||+||+|||+.
T Consensus       116 vDis~~al~~A~~N~~~~--~----~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~  164 (251)
T TIGR03704       116 ADIDPAAVRCARRNLADA--G----GTVHEGDLYDALPTALRGRVDILAANAPYV  164 (251)
T ss_pred             EECCHHHHHHHHHHHHHc--C----CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence            999999999999999873  1    37899998765432 225799999999975

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.66  E-value=1.9e-15  Score=140.92  Aligned_cols=175  Identities=19%  Similarity=0.216  Sum_probs=111.8

Q ss_pred             hHHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccC-e-EEEeeeeEEEEECCCCCCCCCHHHHHHH
Q 044572          211 KLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGET-D-FWENVGGIDISLAPSSFGQANTRAFDIL  288 (457)
Q Consensus       211 ~~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~-~-~~~~~~g~~~~i~~~~FfQ~n~~~~~~l  288 (457)
                      ..+.+++.++..      .+.+.+++.....-.+. .....+++|+|+. . ...+++|++|.+|..--|...+-..|+ 
T Consensus        21 ~~~~I~~~i~~~------~~~vktV~~k~~~v~g~-~R~~~~~~LaG~~~~~t~~~E~G~~f~~D~~kvyfs~rl~~Er-   92 (200)
T PF02475_consen   21 YKELIAEAILEK------NPNVKTVYNKIGIVEGE-FRTPDLEVLAGEPRTETIHKENGIRFKVDLSKVYFSPRLSTER-   92 (200)
T ss_dssp             HHHHHHHHHHHH------C-T-SEEEEE-S-SBTT-TTB--EEEEEES--SEEEEEETTEEEEEETTTS---GGGHHHH-
T ss_pred             HHHHHHHHHHHh------ccCceEEEEecCcCCCC-cccccEEEEeCCCceEEEEEeCCEEEEEccceEEEccccHHHH-
Confidence            445677777653      44677887654332222 2335689999987 3 334789999999976544444555665 


Q ss_pred             HHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc
Q 044572          289 LRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL  368 (457)
Q Consensus       289 ~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~  368 (457)
                       ..+.+.+.+|++|+|+|||.|.|++.+|+..+++.|+|+|+||+|++.+++|++.|  +..+++..+++|+.+++.  .
T Consensus        93 -~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lN--kv~~~i~~~~~D~~~~~~--~  167 (200)
T PF02475_consen   93 -RRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLN--KVENRIEVINGDAREFLP--E  167 (200)
T ss_dssp             -HHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHT--T-TTTEEEEES-GGG-----T
T ss_pred             -HHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHc--CCCCeEEEEcCCHHHhcC--c
Confidence             45566667899999999999999999998666789999999999999999999995  455679999999988765  4


Q ss_pred             CCccEEEECCCCCCccHHHHHHHHhcCCCCcE
Q 044572          369 VGSDVLVVDPPRKGLDSSLVHALQSIGSAERK  400 (457)
Q Consensus       369 ~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~i  400 (457)
                      ..+|.|+++.|....  +.+.....+.+.+++
T Consensus       168 ~~~drvim~lp~~~~--~fl~~~~~~~~~~g~  197 (200)
T PF02475_consen  168 GKFDRVIMNLPESSL--EFLDAALSLLKEGGI  197 (200)
T ss_dssp             T-EEEEEE--TSSGG--GGHHHHHHHEEEEEE
T ss_pred             cccCEEEECChHHHH--HHHHHHHHHhcCCcE
Confidence            679999999997654  355555444333433

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.63  E-value=4.8e-15  Score=163.17  Aligned_cols=138  Identities=12%  Similarity=0.049  Sum_probs=102.2

Q ss_pred             CeEEEeeeeEEEEECC-----CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHH
Q 044572          259 TDFWENVGGIDISLAP-----SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE  333 (457)
Q Consensus       259 ~~~~~~~~g~~~~i~~-----~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~  333 (457)
                      ..+...++|++|.++.     ++||-.++..-    .++.++. .+.+|||+|||+|.||+.+|. .|+++|++||+|+.
T Consensus       499 ~~~~v~e~g~~f~v~~~~~~~tG~flDqr~~R----~~~~~~~-~g~rVLDlf~gtG~~sl~aa~-~Ga~~V~~vD~s~~  572 (702)
T PRK11783        499 EFLEVTEYGAKLLVNLTDYLDTGLFLDHRPTR----RMIGQMA-KGKDFLNLFAYTGTASVHAAL-GGAKSTTTVDMSNT  572 (702)
T ss_pred             ceEEEEECCEEEEEEcCCCCcceECHHHHHHH----HHHHHhc-CCCeEEEcCCCCCHHHHHHHH-CCCCEEEEEeCCHH
Confidence            3455677999999984     46776655432    2233333 588999999999999999997 56789999999999


Q ss_pred             HHHHHHHHHhhCCCCCC-CcEEEEEccCCcCcccccCCccEEEECCCCCCcc-------------HHHHHHHHhcCCCCc
Q 044572          334 SQLSFEKTVSRLPKSVD-GNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLD-------------SSLVHALQSIGSAER  399 (457)
Q Consensus       334 av~~A~~Na~~~~~~~~-~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~-------------~~v~~~l~~~~~~~~  399 (457)
                      |++.|++|++.|+  .. ++++++++|+.+++......||+||+|||+.+-+             .+++..+.++-.+++
T Consensus       573 al~~a~~N~~~ng--~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG  650 (702)
T PRK11783        573 YLEWAERNFALNG--LSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGG  650 (702)
T ss_pred             HHHHHHHHHHHhC--CCccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999853  32 4799999999886544345799999999975422             123444333334777


Q ss_pred             EEEEe
Q 044572          400 KAKSL  404 (457)
Q Consensus       400 ivyvs  404 (457)
                      +++++
T Consensus       651 ~l~~~  655 (702)
T PRK11783        651 TLYFS  655 (702)
T ss_pred             EEEEE
Confidence            77776

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.61  E-value=7.7e-15  Score=149.70  Aligned_cols=124  Identities=18%  Similarity=0.241  Sum_probs=101.5

Q ss_pred             CCeEEEeeccCeEEEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEE
Q 044572          249 GNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCV  328 (457)
Q Consensus       249 ~~~~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gV  328 (457)
                      +.+.+++.|...    +.|.+|.++++.|+  ++..++.+++.+.+.+.++.+|||+|||+|.+++.++......+|+|+
T Consensus       208 gePlqYIlG~~~----F~G~~f~V~p~vLI--PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAV  281 (423)
T PRK14966        208 GEPVAYILGVRE----FYGRRFAVNPNVLI--PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRAS  281 (423)
T ss_pred             CCCceeEeeeee----ecCcEEEeCCCccC--CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEE
Confidence            345666777654    56899999999999  688999999999887766789999999999999999976555699999


Q ss_pred             eCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCC
Q 044572          329 EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKG  382 (457)
Q Consensus       329 E~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~G  382 (457)
                      |+|++|++.|++|++.+  +  .+++++++|+.+........||+||.|||+..
T Consensus       282 DiS~~ALe~AreNa~~~--g--~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~  331 (423)
T PRK14966        282 DISPPALETARKNAADL--G--ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE  331 (423)
T ss_pred             ECCHHHHHHHHHHHHHc--C--CcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence            99999999999999873  2  37999999986542111246999999999843

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.61  E-value=1.2e-14  Score=143.44  Aligned_cols=121  Identities=17%  Similarity=0.205  Sum_probs=93.4

Q ss_pred             EEEeeccCeEEEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEe
Q 044572          252 WRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVE  329 (457)
Q Consensus       252 ~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE  329 (457)
                      ..++.|...    +.|++|.+++++|+ .+++..+.+...+.+++.  ++.+|||+|||+|.+++.+|......+|+|+|
T Consensus        78 l~yi~g~~~----f~g~~f~v~~~vli-pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avD  152 (284)
T TIGR03533        78 VAYLTNEAW----FAGLEFYVDERVLI-PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVD  152 (284)
T ss_pred             HHHHcCCCe----ecCcEEEECCCCcc-CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEE
Confidence            445556665    46899999999999 566554444444444442  45789999999999999999865446899999


Q ss_pred             CCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCC
Q 044572          330 INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK  381 (457)
Q Consensus       330 ~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~  381 (457)
                      +|+.|++.|++|++.+  +..++++++++|+.+.+.  ...||+||.||||.
T Consensus       153 is~~al~~A~~n~~~~--~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NPPy~  200 (284)
T TIGR03533       153 ISPDALAVAEINIERH--GLEDRVTLIQSDLFAALP--GRKYDLIVSNPPYV  200 (284)
T ss_pred             CCHHHHHHHHHHHHHc--CCCCcEEEEECchhhccC--CCCccEEEECCCCC
Confidence            9999999999999874  333579999999876432  24699999999985

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.59  E-value=2e-14  Score=143.38  Aligned_cols=124  Identities=16%  Similarity=0.197  Sum_probs=94.5

Q ss_pred             eEEEeeccCeEEEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCCC-C-CeEEEEcccccHHHHHHHhhCCCCEEEEE
Q 044572          251 RWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPY-G-ASVTDLYAGAGVIGLSLAAARKCRSVKCV  328 (457)
Q Consensus       251 ~~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~~-~-~~vLDl~cG~G~~sl~lA~~~~~~~V~gV  328 (457)
                      +..++.|..+    +.|++|.+++++|+ .+++..+.+...+.+++.. + .+|||+|||+|.+++.++......+|+|+
T Consensus        89 Pl~yi~g~~~----F~g~~f~v~~~vli-pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~av  163 (307)
T PRK11805         89 PAAYLTNEAW----FCGLEFYVDERVLV-PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAV  163 (307)
T ss_pred             cHHHHcCcce----EcCcEEEECCCCcC-CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEE
Confidence            3445666665    46899999999999 5655544444443334432 2 68999999999999999986555699999


Q ss_pred             eCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCc
Q 044572          329 EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGL  383 (457)
Q Consensus       329 E~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl  383 (457)
                      |+|+.|++.|++|++.+  +..++++++++|+.+.+.  ...||+||.||||.+.
T Consensus       164 Dis~~al~~A~~n~~~~--~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPPyi~~  214 (307)
T PRK11805        164 DISPDALAVAEINIERH--GLEDRVTLIESDLFAALP--GRRYDLIVSNPPYVDA  214 (307)
T ss_pred             eCCHHHHHHHHHHHHHh--CCCCcEEEEECchhhhCC--CCCccEEEECCCCCCc
Confidence            99999999999999874  333579999999876442  2469999999998653

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.59  E-value=5.4e-14  Score=128.53  Aligned_cols=107  Identities=26%  Similarity=0.285  Sum_probs=84.5

Q ss_pred             EEEEECCCCCCCCCHH-HHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCC
Q 044572          268 IDISLAPSSFGQANTR-AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP  346 (457)
Q Consensus       268 ~~~~i~~~~FfQ~n~~-~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~  346 (457)
                      ++|...|+.|.+.... .++.|++.+...  .+.+|||+|||+|.+|+.+++.....+|+++|+++.|++.|++|++.+ 
T Consensus         2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n-   78 (170)
T PF05175_consen    2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN-   78 (170)
T ss_dssp             EEEEEETTSTTTTSHHHHHHHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT-
T ss_pred             EEEEECCCeeCCCCCCHHHHHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-
Confidence            5788899999987764 455666665554  578999999999999999998655447999999999999999999984 


Q ss_pred             CCCCCcEEEEEccCCcCcccccCCccEEEECCCCC
Q 044572          347 KSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK  381 (457)
Q Consensus       347 ~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~  381 (457)
                        ..++++++..|+.+...  ..+||+|+.|||..
T Consensus        79 --~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP~~  109 (170)
T PF05175_consen   79 --GLENVEVVQSDLFEALP--DGKFDLIVSNPPFH  109 (170)
T ss_dssp             --TCTTEEEEESSTTTTCC--TTCEEEEEE---SB
T ss_pred             --Ccccccccccccccccc--ccceeEEEEccchh
Confidence              33449999999987654  36899999999963

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.56  E-value=5.8e-14  Score=130.50  Aligned_cols=135  Identities=16%  Similarity=0.193  Sum_probs=97.2

Q ss_pred             eeEEEEECCCCCCCC-CHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          266 GGIDISLAPSSFGQA-NTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       266 ~g~~~~i~~~~FfQ~-n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      .|.++..+++.+--. ....-+.+++.+...+ ++.+|||||||+|++|+.++. +++++|++||.++.+++.+++|++.
T Consensus        17 kg~~l~~p~~~~~rpt~~~vrea~f~~l~~~~-~g~~vLDLfaGsG~lglea~s-rga~~v~~vE~~~~a~~~~~~N~~~   94 (189)
T TIGR00095        17 GGRLLKLPPGGSTRPTTRVVRELFFNILRPEI-QGAHLLDVFAGSGLLGEEALS-RGAKVAFLEEDDRKANQTLKENLAL   94 (189)
T ss_pred             CCcccCCCCCCCCCCchHHHHHHHHHHHHHhc-CCCEEEEecCCCcHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            456666665554322 2333445556554444 588999999999999999997 4678999999999999999999998


Q ss_pred             CCCCCCCcEEEEEccCCcCccccc---CCccEEEECCCCC-CccHHHHHHHHhc--CCCCcEEEEe
Q 044572          345 LPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRK-GLDSSLVHALQSI--GSAERKAKSL  404 (457)
Q Consensus       345 ~~~~~~~nv~~~~~d~~~~~~~~~---~~~D~vi~DPPR~-Gl~~~v~~~l~~~--~~~~~ivyvs  404 (457)
                      +  +..++++++++|+.+.+..+.   ..+|+|++|||+. ....++++.+...  ...+.++++.
T Consensus        95 ~--~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E  158 (189)
T TIGR00095        95 L--KSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVE  158 (189)
T ss_pred             h--CCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence            4  333579999999977543321   2389999999985 4445666666553  2467777776

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.56  E-value=3e-14  Score=130.06  Aligned_cols=134  Identities=21%  Similarity=0.240  Sum_probs=100.4

Q ss_pred             eEEEEECCCCCC-CCCHHHHHHHHHHHHh-hCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          267 GIDISLAPSSFG-QANTRAFDILLRKLQK-YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       267 g~~~~i~~~~Ff-Q~n~~~~~~l~~~i~~-~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      |.++.+.++.-. .+--.+-|.+++++.. ++ .|.++||||+|||++|+.++. +|+++|+.||.|..++..+++|++.
T Consensus        11 gr~L~~p~~~~~RPT~drVREalFNil~~~~i-~g~~~LDlFAGSGaLGlEAlS-RGA~~~~~vE~~~~a~~~l~~N~~~   88 (187)
T COG0742          11 GRKLKTPDGPGTRPTTDRVREALFNILAPDEI-EGARVLDLFAGSGALGLEALS-RGAARVVFVEKDRKAVKILKENLKA   88 (187)
T ss_pred             CCcccCCCCCCcCCCchHHHHHHHHhcccccc-CCCEEEEecCCccHhHHHHHh-CCCceEEEEecCHHHHHHHHHHHHH
Confidence            555555553222 2234566788888777 35 589999999999999999996 6799999999999999999999998


Q ss_pred             CCCCCCCcEEEEEccCCcCcccccCC--ccEEEECCCCC-CccHHHHHHHH--h--cCCCCcEEEEe
Q 044572          345 LPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRK-GLDSSLVHALQ--S--IGSAERKAKSL  404 (457)
Q Consensus       345 ~~~~~~~nv~~~~~d~~~~~~~~~~~--~D~vi~DPPR~-Gl~~~v~~~l~--~--~~~~~~ivyvs  404 (457)
                      ++  ...+++++..|+...+......  ||+|++|||+. |+.......+.  .  +..++.++|+.
T Consensus        89 l~--~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E  153 (187)
T COG0742          89 LG--LEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVE  153 (187)
T ss_pred             hC--CccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence            53  3467899999998665544444  99999999986 66543333333  2  23589999998

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.54  E-value=1.1e-14  Score=134.43  Aligned_cols=135  Identities=25%  Similarity=0.322  Sum_probs=94.3

Q ss_pred             eeEEEEECCCCCCCC-CHHHHHHHHHHHHhh-CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHh
Q 044572          266 GGIDISLAPSSFGQA-NTRAFDILLRKLQKY-VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS  343 (457)
Q Consensus       266 ~g~~~~i~~~~FfQ~-n~~~~~~l~~~i~~~-~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~  343 (457)
                      .|.++...++..... -...-|.+++++... + +|.++||||||||.+|+++.. +||++|+.||.|+.+++..++|++
T Consensus         9 kgr~l~~p~~~~~RPT~drvrealFniL~~~~~-~g~~vLDLFaGSGalGlEALS-RGA~~v~fVE~~~~a~~~i~~N~~   86 (183)
T PF03602_consen    9 KGRKLKTPKGDNTRPTTDRVREALFNILQPRNL-EGARVLDLFAGSGALGLEALS-RGAKSVVFVEKNRKAIKIIKKNLE   86 (183)
T ss_dssp             TT-EEE-TT--TS-SSSHHHHHHHHHHHHCH-H-TT-EEEETT-TTSHHHHHHHH-TT-SEEEEEES-HHHHHHHHHHHH
T ss_pred             CCCEecCCCCCCcCCCcHHHHHHHHHHhccccc-CCCeEEEcCCccCccHHHHHh-cCCCeEEEEECCHHHHHHHHHHHH
Confidence            355666655433322 234667888887766 4 589999999999999999886 679999999999999999999999


Q ss_pred             hCCCCCCCcEEEEEccCCcCcccc---cCCccEEEECCCCC-Ccc-HHHHHHHHhcC--CCCcEEEEe
Q 044572          344 RLPKSVDGNISWHNADNSIEPLSW---LVGSDVLVVDPPRK-GLD-SSLVHALQSIG--SAERKAKSL  404 (457)
Q Consensus       344 ~~~~~~~~nv~~~~~d~~~~~~~~---~~~~D~vi~DPPR~-Gl~-~~v~~~l~~~~--~~~~ivyvs  404 (457)
                      .++  ..++++.++.|+...+.+.   ...||+|++|||+. +.. .++++.|....  ..+.++++.
T Consensus        87 ~l~--~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E  152 (183)
T PF03602_consen   87 KLG--LEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIE  152 (183)
T ss_dssp             HHT---GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred             HhC--CCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            853  3346899999988766543   36799999999986 443 67888887432  468889987

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=3.8e-13  Score=121.82  Aligned_cols=122  Identities=22%  Similarity=0.243  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHhhCC-CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572          282 TRAFDILLRKLQKYVP-YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN  360 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~-~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~  360 (457)
                      ...+..++..+...-. +|.+|+|||||||.+++.++. .|+.+|+|||++++|++.+++|++.+    ..++.|+.+|+
T Consensus        28 ~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~-lGa~~V~~vdiD~~a~ei~r~N~~~l----~g~v~f~~~dv  102 (198)
T COG2263          28 APLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAAL-LGASRVLAVDIDPEALEIARANAEEL----LGDVEFVVADV  102 (198)
T ss_pred             hHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHh-cCCcEEEEEecCHHHHHHHHHHHHhh----CCceEEEEcch
Confidence            3445555444432111 688999999999999999987 57899999999999999999999872    35799999999


Q ss_pred             CcCcccccCCccEEEECCC----CCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHH
Q 044572          361 SIEPLSWLVGSDVLVVDPP----RKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILR  422 (457)
Q Consensus       361 ~~~~~~~~~~~D~vi~DPP----R~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~  422 (457)
                      .+.    ...+|+||+|||    +.+.+..+++...+.   ..+||.-       ++...++|+..
T Consensus       103 ~~~----~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~---s~vVYsi-------H~a~~~~f~~~  154 (198)
T COG2263         103 SDF----RGKFDTVIMNPPFGSQRRHADRPFLLKALEI---SDVVYSI-------HKAGSRDFVEK  154 (198)
T ss_pred             hhc----CCccceEEECCCCccccccCCHHHHHHHHHh---hheEEEe-------eccccHHHHHH
Confidence            875    357899999999    567777777655554   4788864       33345666654

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=7e-14  Score=137.56  Aligned_cols=109  Identities=17%  Similarity=0.201  Sum_probs=89.2

Q ss_pred             eeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCCCCC-eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHH
Q 044572          264 NVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA-SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV  342 (457)
Q Consensus       264 ~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~~~~-~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na  342 (457)
                      .+.|++|.++++.+..  ++.++.|++.+...+.... +|||+|||||.+++.+|......+|+|+|+|++|++.|++|+
T Consensus        77 ~f~gl~~~v~~~vliP--r~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na  154 (280)
T COG2890          77 EFGGLRFKVDEGVLIP--RPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENA  154 (280)
T ss_pred             eecceeeeeCCCceec--CCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHH
Confidence            3679999999999986  6677888887664333233 799999999999999998765569999999999999999999


Q ss_pred             hhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCC
Q 044572          343 SRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPR  380 (457)
Q Consensus       343 ~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR  380 (457)
                      +.+  +. .++.++.+|.++.+.   ++||+||.|||+
T Consensus       155 ~~~--~l-~~~~~~~~dlf~~~~---~~fDlIVsNPPY  186 (280)
T COG2890         155 ERN--GL-VRVLVVQSDLFEPLR---GKFDLIVSNPPY  186 (280)
T ss_pred             HHc--CC-ccEEEEeeecccccC---CceeEEEeCCCC
Confidence            984  33 677788888776543   489999999997

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.51  E-value=2.5e-13  Score=134.30  Aligned_cols=120  Identities=18%  Similarity=0.195  Sum_probs=95.2

Q ss_pred             EEEeeccCeEEEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCC--C-CCeEEEEcccccHHHHHHHhhCCCCEEEEE
Q 044572          252 WRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP--Y-GASVTDLYAGAGVIGLSLAAARKCRSVKCV  328 (457)
Q Consensus       252 ~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~--~-~~~vLDl~cG~G~~sl~lA~~~~~~~V~gV  328 (457)
                      ..++.|...    +.|++|.++++.|+  ++..++.|+..+.+.+.  . ..+|||+|||+|.+++.++......+|+|+
T Consensus        71 l~yi~g~~~----f~g~~f~v~~~vli--Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~av  144 (284)
T TIGR00536        71 VAYLLGSKE----FYGLEFFVNEHVLI--PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAV  144 (284)
T ss_pred             HHHHhCcce----EcCeEEEECCCCcC--CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEE
Confidence            344556544    56899999999998  57788888888876542  2 268999999999999999986544689999


Q ss_pred             eCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCC
Q 044572          329 EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK  381 (457)
Q Consensus       329 E~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~  381 (457)
                      |+|++|++.|++|++.++  ..++++|+++|+.+.+.  ...||+||.|||+.
T Consensus       145 Dis~~al~~a~~n~~~~~--~~~~v~~~~~d~~~~~~--~~~fDlIvsNPPyi  193 (284)
T TIGR00536       145 DISPDALAVAEENAEKNQ--LEHRVEFIQSNLFEPLA--GQKIDIIVSNPPYI  193 (284)
T ss_pred             ECCHHHHHHHHHHHHHcC--CCCcEEEEECchhccCc--CCCccEEEECCCCC
Confidence            999999999999998743  23469999999876432  13799999999975

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.48  E-value=1.1e-12  Score=130.79  Aligned_cols=177  Identities=16%  Similarity=0.169  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccC-eEE-EeeeeEEEEECCC-CCC-CCCHHHHHH
Q 044572          212 LESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGET-DFW-ENVGGIDISLAPS-SFG-QANTRAFDI  287 (457)
Q Consensus       212 ~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~-~~~-~~~~g~~~~i~~~-~Ff-Q~n~~~~~~  287 (457)
                      ...+++.++..      .+.+.++|.....-.+... -..+++|+|+. ..+ .+.+|+.|++|.. .|| .-|  .+|+
T Consensus       109 ~~~i~~ai~~~------~~~vk~V~~k~~~v~G~~R-~~~le~laGe~~teTihrE~G~~f~vD~~Kv~Fsprl--~~ER  179 (341)
T COG2520         109 KREIAEAILRV------HGKVKAVLLKEGPVAGEFR-VPRLEVLAGERRTETIHRENGCRFKVDVAKVYFSPRL--STER  179 (341)
T ss_pred             HHHHHHHHHhh------ccCeeEEEEecCccCCeEe-ccceEEeecCCCceEEEecCCEEEEEchHHeEECCCc--hHHH
Confidence            34566666532      3457788765442222222 23589999998 333 4678999999963 444 434  3443


Q ss_pred             HHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc
Q 044572          288 LLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW  367 (457)
Q Consensus       288 l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~  367 (457)
                        ..+.+.+.+|++|+|+|||.|-|++++|+.+. .+|+|+|+||.|++.+++|+++|+  ....+..++||+.+...+.
T Consensus       180 --~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~--v~~~v~~i~gD~rev~~~~  254 (341)
T COG2520         180 --ARVAELVKEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNK--VEGRVEPILGDAREVAPEL  254 (341)
T ss_pred             --HHHHhhhcCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcC--ccceeeEEeccHHHhhhcc
Confidence              34445556799999999999999999998644 449999999999999999999843  3344999999998876553


Q ss_pred             cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          368 LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       368 ~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                       ..+|-|+++=|-.. +.-+-.++..++..+.+.|-.
T Consensus       255 -~~aDrIim~~p~~a-~~fl~~A~~~~k~~g~iHyy~  289 (341)
T COG2520         255 -GVADRIIMGLPKSA-HEFLPLALELLKDGGIIHYYE  289 (341)
T ss_pred             -ccCCEEEeCCCCcc-hhhHHHHHHHhhcCcEEEEEe
Confidence             67999999888532 222333444444455665654

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.45  E-value=8.8e-13  Score=134.39  Aligned_cols=136  Identities=16%  Similarity=0.115  Sum_probs=99.8

Q ss_pred             eeEEEEEC--CCCCCC----CCHHHHHHHHHHHHhhCCC--CCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHH
Q 044572          266 GGIDISLA--PSSFGQ----ANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQL  336 (457)
Q Consensus       266 ~g~~~~i~--~~~FfQ----~n~~~~~~l~~~i~~~~~~--~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~  336 (457)
                      +..+|.++  ...||-    .||...-.+++...+...+  +-+|||+|||+|.+|+.++... ++++|+++|+|++|++
T Consensus         4 G~~~i~~p~~~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~   83 (374)
T TIGR00308         4 GKAEILVPKKETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVE   83 (374)
T ss_pred             ceEEEEecCCCCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHH
Confidence            44555553  357873    3555554444443332211  2489999999999999999863 6789999999999999


Q ss_pred             HHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEecc
Q 044572          337 SFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSE  406 (457)
Q Consensus       337 ~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~  406 (457)
                      .+++|++.|   ...+++++++|+...+......||+|++||+  |.....++.+......++++|++++
T Consensus        84 ~i~~N~~~N---~~~~~~v~~~Da~~~l~~~~~~fDvIdlDPf--Gs~~~fld~al~~~~~~glL~vTaT  148 (374)
T TIGR00308        84 SIKNNVEYN---SVENIEVPNEDAANVLRYRNRKFHVIDIDPF--GTPAPFVDSAIQASAERGLLLVTAT  148 (374)
T ss_pred             HHHHHHHHh---CCCcEEEEchhHHHHHHHhCCCCCEEEeCCC--CCcHHHHHHHHHhcccCCEEEEEec
Confidence            999999984   3457899999998876543457999999995  6655677666655457889999853

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.45  E-value=3.6e-13  Score=142.93  Aligned_cols=122  Identities=13%  Similarity=0.110  Sum_probs=97.7

Q ss_pred             eEEEeeccCeEEEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCC--------------------------CCCeEEE
Q 044572          251 RWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP--------------------------YGASVTD  304 (457)
Q Consensus       251 ~~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~--------------------------~~~~vLD  304 (457)
                      +..+|.|...    +.|++|.|+++.+..  +..+|.|++.+++.+.                          ++.+|||
T Consensus        71 PlqYI~G~~~----F~g~~f~V~~~VLIP--RpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLD  144 (506)
T PRK01544         71 PIAYITGVKE----FYSREFIVNKHVLIP--RSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILE  144 (506)
T ss_pred             CHHHHhCcCE----EcCcEEEeCCCcccC--CCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEE
Confidence            4455667665    579999999999996  7788999988865431                          2358999


Q ss_pred             EcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCC
Q 044572          305 LYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKG  382 (457)
Q Consensus       305 l~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~G  382 (457)
                      +|||+|.+++.++......+|+|+|+|+.|++.|++|++.+  +..++++++++|+.+.+.  ...||+||.|||+..
T Consensus       145 lG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~--~l~~~v~~~~~D~~~~~~--~~~fDlIvsNPPYi~  218 (506)
T PRK01544        145 LGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY--EVTDRIQIIHSNWFENIE--KQKFDFIVSNPPYIS  218 (506)
T ss_pred             ccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc--CCccceeeeecchhhhCc--CCCccEEEECCCCCC
Confidence            99999999999987655569999999999999999999874  334579999999865432  247999999999753

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.44  E-value=9.6e-13  Score=125.62  Aligned_cols=123  Identities=20%  Similarity=0.177  Sum_probs=94.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-CCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-VGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-~~~D~vi~  376 (457)
                      ...+|||+|||+|.+++.+|++....+|+|||+++++++.|++|++.|  ...++++++++|+..+..... .+||+||+
T Consensus        44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln--~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~  121 (248)
T COG4123          44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN--PLEERIQVIEADIKEFLKALVFASFDLIIC  121 (248)
T ss_pred             cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC--cchhceeEehhhHHHhhhcccccccCEEEe
Confidence            478999999999999999998644479999999999999999999984  466899999999988755433 45999999


Q ss_pred             CCCCCCc--------------------cHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhcc
Q 044572          377 DPPRKGL--------------------DSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASV  428 (457)
Q Consensus       377 DPPR~Gl--------------------~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~  428 (457)
                      |||+.-.                    ..++++....+-.+++.+++      |.+.....+|+++++...-
T Consensus       122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~------V~r~erl~ei~~~l~~~~~  187 (248)
T COG4123         122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF------VHRPERLAEIIELLKSYNL  187 (248)
T ss_pred             CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE------EecHHHHHHHHHHHHhcCC
Confidence            9996321                    11344444444345555555      4577788899999888543

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.38  E-value=4.4e-12  Score=120.28  Aligned_cols=129  Identities=16%  Similarity=0.092  Sum_probs=94.5

Q ss_pred             eEEEEECCCCCCCCCHHHHHHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHh
Q 044572          267 GIDISLAPSSFGQANTRAFDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVS  343 (457)
Q Consensus       267 g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~  343 (457)
                      +..|.-.+..|.+.+......++..+.+++  .++.+|||+|||+|.++..+|+..+ ..+|++||+++++++.|++|++
T Consensus        44 ~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~  123 (215)
T TIGR00080        44 EYAYVDTPLEIGYGQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLR  123 (215)
T ss_pred             hhCcCCCCcccCCCCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            344555566777666555556666666654  3789999999999999999998644 2469999999999999999998


Q ss_pred             hCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          344 RLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       344 ~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      .+   +.+|++++++|+.+.... ...||+|++|++...+...+.+   .++ +++.+++
T Consensus       124 ~~---g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~~~~~~~~~~---~L~-~gG~lv~  175 (215)
T TIGR00080       124 KL---GLDNVIVIVGDGTQGWEP-LAPYDRIYVTAAGPKIPEALID---QLK-EGGILVM  175 (215)
T ss_pred             HC---CCCCeEEEECCcccCCcc-cCCCCEEEEcCCcccccHHHHH---hcC-cCcEEEE
Confidence            74   346899999999765432 3579999999987776654433   355 4444444

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.37  E-value=2.1e-11  Score=117.85  Aligned_cols=111  Identities=24%  Similarity=0.252  Sum_probs=88.4

Q ss_pred             eeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCC-CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHh
Q 044572          265 VGGIDISLAPSSFGQANTRAFDILLRKLQKYVP-YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS  343 (457)
Q Consensus       265 ~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~-~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~  343 (457)
                      +.+..|.+++..|..  +..++.++..+.+.+. .+.+|||+|||+|.+++.++......+|+|+|+++.+++.|++|++
T Consensus        55 ~~~~~~~~~~~~~~p--~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~  132 (251)
T TIGR03534        55 FYGLDFKVSPGVLIP--RPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAA  132 (251)
T ss_pred             EeceEEEECCCcccC--CCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence            456778888888864  4456677777776654 3568999999999999999986545699999999999999999998


Q ss_pred             hCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCC
Q 044572          344 RLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKG  382 (457)
Q Consensus       344 ~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~G  382 (457)
                      .+   ...+++++++|+.+...  .+.||+|+.|||+..
T Consensus       133 ~~---~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~  166 (251)
T TIGR03534       133 RL---GLDNVTFLQSDWFEPLP--GGKFDLIVSNPPYIP  166 (251)
T ss_pred             Hc---CCCeEEEEECchhccCc--CCceeEEEECCCCCc
Confidence            74   33579999999876432  357999999999764

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.36  E-value=2.3e-12  Score=109.63  Aligned_cols=81  Identities=22%  Similarity=0.230  Sum_probs=66.3

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEEEC
Q 044572          299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVVD  377 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~D  377 (457)
                      |.+|||+|||+|.+.+.+++.. ..+++|+|+++.+++.|++|+..+  ...++++++++|+.+..... ..+||+|+.|
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n   77 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRN--GLDDRVEVIVGDARDLPEPLPDGKFDLIVTN   77 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHC--TTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHc--cCCceEEEEECchhhchhhccCceeEEEEEC
Confidence            5689999999999999999875 579999999999999999999884  34468999999997765222 3679999999


Q ss_pred             CCCCC
Q 044572          378 PPRKG  382 (457)
Q Consensus       378 PPR~G  382 (457)
                      ||+..
T Consensus        78 pP~~~   82 (117)
T PF13659_consen   78 PPYGP   82 (117)
T ss_dssp             -STTS
T ss_pred             CCCcc
Confidence            99864

...

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.35  E-value=7.7e-12  Score=105.43  Aligned_cols=104  Identities=16%  Similarity=0.139  Sum_probs=76.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.+++.+++.....+|+|||+|+++++.|++|+...  ...++++++++|+ .........||+|+++
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~   77 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE--GLSDRITFVQGDA-EFDPDFLEPFDLVICS   77 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT--TTTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence            478999999999999999998434568999999999999999999542  3558999999999 3333345679999998


Q ss_pred             C-CCCCcc-----HHHHHHHHhcCCCCcEEEEe
Q 044572          378 P-PRKGLD-----SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 P-PR~Gl~-----~~v~~~l~~~~~~~~ivyvs  404 (457)
                      - --..+-     .++++.+.+.-.+++.+.++
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence            7 211111     13455555443456666654

...

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.33  E-value=6e-12  Score=119.46  Aligned_cols=122  Identities=22%  Similarity=0.279  Sum_probs=95.9

Q ss_pred             EEEeeccCeEEEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCC-----CCCeEEEEcccccHHHHHHHhhCCCCEEE
Q 044572          252 WRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP-----YGASVTDLYAGAGVIGLSLAAARKCRSVK  326 (457)
Q Consensus       252 ~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~-----~~~~vLDl~cG~G~~sl~lA~~~~~~~V~  326 (457)
                      .+++.|...    ++++++...|+.|+.  +..+|.+++++.+.+.     .+..+||+|||+|.+++.++..-+-..|+
T Consensus       103 lQYIlg~~~----F~~l~l~~~pgVlIP--RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~  176 (328)
T KOG2904|consen  103 LQYILGSQP----FGDLDLVCKPGVLIP--RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVT  176 (328)
T ss_pred             hhheeccCc----cCCceEEecCCeeec--CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEE
Confidence            344555543    689999999999996  7788999999988764     46689999999999999999765556899


Q ss_pred             EEeCCHHHHHHHHHHHhhCCCCCCCcEEEE----EccCCcCcccccCCccEEEECCCCC
Q 044572          327 CVEINKESQLSFEKTVSRLPKSVDGNISWH----NADNSIEPLSWLVGSDVLVVDPPRK  381 (457)
Q Consensus       327 gVE~~~~av~~A~~Na~~~~~~~~~nv~~~----~~d~~~~~~~~~~~~D~vi~DPPR~  381 (457)
                      |||.|+.|+..|.+|++++.  ....+..+    .+|+........+..|+++.|||+.
T Consensus       177 AiD~S~~Ai~La~eN~qr~~--l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI  233 (328)
T KOG2904|consen  177 AIDVSKAAIKLAKENAQRLK--LSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYI  233 (328)
T ss_pred             EEeccHHHHHHHHHHHHHHh--hcCceEEEecccccccccccccccCceeEEecCCCcc
Confidence            99999999999999999854  34566666    4454443322346799999999973

>PRK14967 putative methyltransferase; Provisional

Probab=99.33  E-value=3.9e-11  Score=114.48  Aligned_cols=106  Identities=23%  Similarity=0.245  Sum_probs=80.2

Q ss_pred             eEEEEECCCCCCCCCHHHHHHHHHHHHhh-CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhC
Q 044572          267 GIDISLAPSSFGQANTRAFDILLRKLQKY-VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL  345 (457)
Q Consensus       267 g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~-~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~  345 (457)
                      +..+..+++.|....  .++.+.+.+... +.++.+|||+|||+|.+++.+++. ++.+|+++|+++.+++.|++|++.+
T Consensus         6 ~~~~~~~~g~~~p~~--ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~   82 (223)
T PRK14967          6 PDALLRAPGVYRPQE--DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLA   82 (223)
T ss_pred             CceeecCCCCcCCCC--cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHh
Confidence            566777777775432  334455554432 346789999999999999999974 4569999999999999999999873


Q ss_pred             CCCCCCcEEEEEccCCcCcccccCCccEEEECCCCC
Q 044572          346 PKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK  381 (457)
Q Consensus       346 ~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~  381 (457)
                      +    .+++++.+|+.+.+.  ...||+|++|||+.
T Consensus        83 ~----~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~  112 (223)
T PRK14967         83 G----VDVDVRRGDWARAVE--FRPFDVVVSNPPYV  112 (223)
T ss_pred             C----CeeEEEECchhhhcc--CCCeeEEEECCCCC
Confidence            2    258899999876432  25799999999964

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.33  E-value=4e-11  Score=122.27  Aligned_cols=134  Identities=15%  Similarity=0.145  Sum_probs=93.0

Q ss_pred             eEEEEECCCCCCCCCHHH-HHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhC
Q 044572          267 GIDISLAPSSFGQANTRA-FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL  345 (457)
Q Consensus       267 g~~~~i~~~~FfQ~n~~~-~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~  345 (457)
                      ++++.-.++.|....-.. ++.|++.+-.  ..+.+|||+|||+|.+++.+++.....+|++||+|+.|++.|++|++.|
T Consensus       198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~--~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n  275 (378)
T PRK15001        198 DWTIHNHANVFSRTGLDIGARFFMQHLPE--NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN  275 (378)
T ss_pred             eEEEEecCCccCCCCcChHHHHHHHhCCc--ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            455666689999876543 4444443222  1246999999999999999998755579999999999999999999875


Q ss_pred             CCCCCCcEEEEEccCCcCcccccCCccEEEECCCCC-C--ccH----HHHHHHHhcCCCCcEEEEe
Q 044572          346 PKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK-G--LDS----SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       346 ~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~-G--l~~----~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.....+++++.+|+.+...  ..+||+|+.|||.. |  ...    .+++...+.-.+++.+|+.
T Consensus       276 ~~~~~~~v~~~~~D~l~~~~--~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        276 MPEALDRCEFMINNALSGVE--PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             CcccCceEEEEEccccccCC--CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence            32223478999999865432  24799999999953 3  222    2333333333466667765

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.31  E-value=5.8e-11  Score=120.12  Aligned_cols=142  Identities=15%  Similarity=0.170  Sum_probs=99.7

Q ss_pred             eeeEEEEECCCCCCCCCHHHH-HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHh
Q 044572          265 VGGIDISLAPSSFGQANTRAF-DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS  343 (457)
Q Consensus       265 ~~g~~~~i~~~~FfQ~n~~~~-~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~  343 (457)
                      +.++.+...|+.|+|.+.... +.|++.+...  ...+|||+|||+|.+++.++++....+|+++|+|+.|++.|++|++
T Consensus       164 ~~~l~i~~~pgvFs~~~lD~gt~lLl~~l~~~--~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~  241 (342)
T PRK09489        164 VDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPH--TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA  241 (342)
T ss_pred             cCCEEEEeCCCCCCCCCCCHHHHHHHHhcccc--CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence            467889999999999887544 5555544332  2458999999999999999986545689999999999999999998


Q ss_pred             hCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCC-Ccc------HHHHHHHHh-cCCCCcEEEEeccCCCCCchhc
Q 044572          344 RLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK-GLD------SSLVHALQS-IGSAERKAKSLSESSSSMVKEE  415 (457)
Q Consensus       344 ~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~-Gl~------~~v~~~l~~-~~~~~~ivyvs~~~~~c~~~~~  415 (457)
                      .++   . ..+++.+|+....   .+.||+||.|||.. |..      ..++....+ ++ +++.+++-     .+....
T Consensus       242 ~n~---l-~~~~~~~D~~~~~---~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lk-pgG~L~iV-----an~~l~  308 (342)
T PRK09489        242 ANG---L-EGEVFASNVFSDI---KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLN-SGGELRIV-----ANAFLP  308 (342)
T ss_pred             HcC---C-CCEEEEccccccc---CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcC-cCCEEEEE-----EeCCCC
Confidence            842   2 3477888876532   36799999999953 322      234444433 45 55555444     444444


Q ss_pred             hhhHHH
Q 044572          416 KRPWIL  421 (457)
Q Consensus       416 ~~~~~~  421 (457)
                      ..++++
T Consensus       309 y~~~l~  314 (342)
T PRK09489        309 YPDLLD  314 (342)
T ss_pred             hHHHHH
Confidence            555554

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=3.9e-11  Score=116.97  Aligned_cols=130  Identities=20%  Similarity=0.226  Sum_probs=93.6

Q ss_pred             eeEEEEECCCCCCCCCHHH-HHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          266 GGIDISLAPSSFGQANTRA-FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       266 ~g~~~~i~~~~FfQ~n~~~-~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      .+++|.=.|+.|.-..... ++.|++.+..  ..+.+|||+|||.|.+|+.+|+..+-.+|+.+|+|..||+.|++|++.
T Consensus       127 ~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~--~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~  204 (300)
T COG2813         127 HELTFKTLPGVFSRDKLDKGSRLLLETLPP--DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA  204 (300)
T ss_pred             CceEEEeCCCCCcCCCcChHHHHHHHhCCc--cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH
Confidence            4677888899998776544 4444443322  134599999999999999999987678999999999999999999998


Q ss_pred             CCCCCCCcEEEEEccCCcCcccccCCccEEEECCC-CCCccH------HH-HHHHHhcCCCCcEEEE
Q 044572          345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPP-RKGLDS------SL-VHALQSIGSAERKAKS  403 (457)
Q Consensus       345 ~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPP-R~Gl~~------~v-~~~l~~~~~~~~ivyv  403 (457)
                      |   ..++..+...|+.+-..   .+||+||.||| +.|..-      ++ .++...+.+.+.+-.|
T Consensus       205 N---~~~~~~v~~s~~~~~v~---~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iV  265 (300)
T COG2813         205 N---GVENTEVWASNLYEPVE---GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV  265 (300)
T ss_pred             c---CCCccEEEEeccccccc---ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence            3   34555677788766543   48999999999 555432      22 3333345555555555

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.30  E-value=4.3e-11  Score=117.10  Aligned_cols=83  Identities=19%  Similarity=0.142  Sum_probs=68.8

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .+|++|||+|||+|..++.+|...+ ...|+++|+++.+++.+++|++.+   +..+++++++|+..... ....||+|+
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~---g~~~v~~~~~D~~~~~~-~~~~fD~Vl  145 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC---GVLNVAVTNFDGRVFGA-AVPKFDAIL  145 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc---CCCcEEEecCCHHHhhh-hccCCCEEE
Confidence            4789999999999999999987542 358999999999999999999984   34679999999865432 234699999


Q ss_pred             ECCCCCCc
Q 044572          376 VDPPRKGL  383 (457)
Q Consensus       376 ~DPPR~Gl  383 (457)
                      +|||.+|.
T Consensus       146 ~D~Pcsg~  153 (264)
T TIGR00446       146 LDAPCSGE  153 (264)
T ss_pred             EcCCCCCC
Confidence            99998764

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.30  E-value=2.5e-11  Score=119.04  Aligned_cols=111  Identities=21%  Similarity=0.232  Sum_probs=88.4

Q ss_pred             eeeEEEEECCCCCCCCCHHHHHHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHH
Q 044572          265 VGGIDISLAPSSFGQANTRAFDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV  342 (457)
Q Consensus       265 ~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na  342 (457)
                      +.+..|.++++.|..  +..++.+++.+....  .++.+|||+|||+|.+++.++......+|+|+|+++.+++.|++|+
T Consensus        75 f~~~~~~~~~~~lip--r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~  152 (275)
T PRK09328         75 FWGLDFKVSPGVLIP--RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNA  152 (275)
T ss_pred             EcCcEEEECCCceeC--CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            457789999888864  556677777776443  2567999999999999999998754569999999999999999999


Q ss_pred             hhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCC
Q 044572          343 SRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKG  382 (457)
Q Consensus       343 ~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~G  382 (457)
                      +.   ....+++++.+|+.+...  ...||+|+.|||+..
T Consensus       153 ~~---~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy~~  187 (275)
T PRK09328        153 KH---GLGARVEFLQGDWFEPLP--GGRFDLIVSNPPYIP  187 (275)
T ss_pred             Hh---CCCCcEEEEEccccCcCC--CCceeEEEECCCcCC
Confidence            82   234689999999865432  257999999999753

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.30  E-value=4.4e-12  Score=114.10  Aligned_cols=80  Identities=21%  Similarity=0.239  Sum_probs=59.8

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-CC-ccEEEEC
Q 044572          300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-VG-SDVLVVD  377 (457)
Q Consensus       300 ~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-~~-~D~vi~D  377 (457)
                      +.|+|+|||.|.-++.+|+.  +.+|+|||+++.-++.|++|++..  +..+||+|+++|+.+.+.... .. +|+|++|
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vY--Gv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVY--GVADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHT--T-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             CEEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            46999999999999999986  569999999999999999999985  356799999999988665432 22 8999999


Q ss_pred             CCCCCc
Q 044572          378 PPRKGL  383 (457)
Q Consensus       378 PPR~Gl  383 (457)
                      ||..|.
T Consensus        77 PPWGGp   82 (163)
T PF09445_consen   77 PPWGGP   82 (163)
T ss_dssp             --BSSG
T ss_pred             CCCCCc
Confidence            997663

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.28  E-value=4.5e-11  Score=125.46  Aligned_cols=84  Identities=24%  Similarity=0.219  Sum_probs=69.9

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .++++|||+|||+|.+++.+|... +..+|+|+|+++.+++.+++|++.+   +..+++++++|+.+....+.+.||+|+
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~---g~~~v~~~~~D~~~~~~~~~~~fD~Vl  325 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL---GLTNIETKALDARKVHEKFAEKFDKIL  325 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCeEEEEeCCcccccchhcccCCEEE
Confidence            468899999999999999999764 3469999999999999999999884   335699999999775432335799999


Q ss_pred             ECCCCCCc
Q 044572          376 VDPPRKGL  383 (457)
Q Consensus       376 ~DPPR~Gl  383 (457)
                      +|||..|.
T Consensus       326 ~D~Pcsg~  333 (444)
T PRK14902        326 VDAPCSGL  333 (444)
T ss_pred             EcCCCCCC
Confidence            99998764

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.28  E-value=1.8e-11  Score=120.79  Aligned_cols=144  Identities=19%  Similarity=0.196  Sum_probs=97.3

Q ss_pred             eeEEEEECCC-CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          266 GGIDISLAPS-SFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       266 ~g~~~~i~~~-~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      +...+.++|+ +|-..+.+.+...++.+.++..+|++|||+|||||.+++.+++ .|+++|+|+|+++.|++.|++|++.
T Consensus       128 ~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~  206 (295)
T PF06325_consen  128 DEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAEL  206 (295)
T ss_dssp             TSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHH
Confidence            4667899995 7777778888888888888877899999999999999999998 4789999999999999999999998


Q ss_pred             CCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHH
Q 044572          345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRA  423 (457)
Q Consensus       345 ~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~  423 (457)
                      |  +..+++.+.  ...+..   ..+||+|+.|==..-+- .+...+..+-.+++.+.+|     =........+....
T Consensus       207 N--~~~~~~~v~--~~~~~~---~~~~dlvvANI~~~vL~-~l~~~~~~~l~~~G~lIlS-----GIl~~~~~~v~~a~  272 (295)
T PF06325_consen  207 N--GVEDRIEVS--LSEDLV---EGKFDLVVANILADVLL-ELAPDIASLLKPGGYLILS-----GILEEQEDEVIEAY  272 (295)
T ss_dssp             T--T-TTCEEES--CTSCTC---CS-EEEEEEES-HHHHH-HHHHHCHHHEEEEEEEEEE-----EEEGGGHHHHHHHH
T ss_pred             c--CCCeeEEEE--Eecccc---cccCCEEEECCCHHHHH-HHHHHHHHhhCCCCEEEEc-----cccHHHHHHHHHHH
Confidence            5  344455442  222222   26899999876432111 2233333333366666666     23334445555544

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PLN02672 methionine S-methyltransferase

Probab=99.27  E-value=2.7e-11  Score=136.57  Aligned_cols=115  Identities=17%  Similarity=0.055  Sum_probs=91.8

Q ss_pred             eeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCC----CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH
Q 044572          264 NVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP----YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE  339 (457)
Q Consensus       264 ~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~----~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~  339 (457)
                      .+.|++|.+.|+.|..  ++.++.+++.+ +..+    ++.+|||+|||+|.+++.+|......+|+|+|+|++|++.|+
T Consensus        83 ~F~~l~~~V~p~VLIP--RpeTE~lve~L-~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~  159 (1082)
T PLN02672         83 NRKKLTMMEIPSIFIP--EDWSFTFYEGL-NRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAW  159 (1082)
T ss_pred             EecCCceeeCCCcccC--chhHHHHHHHH-HhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence            4679999999999986  68888888874 3322    246899999999999999998765569999999999999999


Q ss_pred             HHHhhCCC-------------CCCCcEEEEEccCCcCcccccCCccEEEECCCCC
Q 044572          340 KTVSRLPK-------------SVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK  381 (457)
Q Consensus       340 ~Na~~~~~-------------~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~  381 (457)
                      +|++.|+.             +..++++|+++|+.+........||+||.|||+-
T Consensus       160 ~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI  214 (1082)
T PLN02672        160 INLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQI  214 (1082)
T ss_pred             HHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcC
Confidence            99987531             1235799999999875532113699999999974

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=5.5e-11  Score=116.47  Aligned_cols=133  Identities=17%  Similarity=0.185  Sum_probs=94.8

Q ss_pred             eeEEEEECCC-CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          266 GGIDISLAPS-SFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       266 ~g~~~~i~~~-~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      +...++++|+ +|-+.+...+..-++++-+++.++.+|||+|||||.+++.+++ -|+++|+|+|+++.|++.|+.|+++
T Consensus       129 ~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~  207 (300)
T COG2264         129 DELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAK-LGAKKVVGVDIDPQAVEAARENARL  207 (300)
T ss_pred             CceEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHH
Confidence            4667888885 7778777777777777777777899999999999999999998 4789999999999999999999998


Q ss_pred             CCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       345 ~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+  ....++.-..+..+...  ...||+||.|= -++....+...+...-.+++.+..|
T Consensus       208 N~--v~~~~~~~~~~~~~~~~--~~~~DvIVANI-LA~vl~~La~~~~~~lkpgg~lIlS  262 (300)
T COG2264         208 NG--VELLVQAKGFLLLEVPE--NGPFDVIVANI-LAEVLVELAPDIKRLLKPGGRLILS  262 (300)
T ss_pred             cC--Cchhhhcccccchhhcc--cCcccEEEehh-hHHHHHHHHHHHHHHcCCCceEEEE
Confidence            42  22112222222222111  24799999876 3443344555555544466666666

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.25  E-value=3.1e-11  Score=126.30  Aligned_cols=84  Identities=20%  Similarity=0.177  Sum_probs=69.6

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc---cccCCcc
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL---SWLVGSD  372 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~---~~~~~~D  372 (457)
                      .+|++|||+|||+|..++.+|...+ ..+|+++|+++.+++.+++|++.+   +..|++++++|+.+...   ...+.||
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~---g~~~v~~~~~D~~~~~~~~~~~~~~fD  327 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL---GLKSIKILAADSRNLLELKPQWRGYFD  327 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc---CCCeEEEEeCChhhcccccccccccCC
Confidence            3689999999999999999997632 358999999999999999999984   34679999999976532   1235799


Q ss_pred             EEEECCCCCCc
Q 044572          373 VLVVDPPRKGL  383 (457)
Q Consensus       373 ~vi~DPPR~Gl  383 (457)
                      .|++|||.+|.
T Consensus       328 ~Vl~DaPCSg~  338 (434)
T PRK14901        328 RILLDAPCSGL  338 (434)
T ss_pred             EEEEeCCCCcc
Confidence            99999998764

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.23  E-value=7.8e-11  Score=105.41  Aligned_cols=104  Identities=15%  Similarity=0.085  Sum_probs=78.7

Q ss_pred             CCCeEEEEcccccHHHHHHHh-hCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~-~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      ++.+|||+|||+|.+++.++. .....+|+|||+|+++++.|+++++.+   ..+|++|+++|+.+....+...||+|+.
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~---~~~ni~~~~~d~~~l~~~~~~~~D~I~~   79 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL---GLDNIEFIQGDIEDLPQELEEKFDIIIS   79 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT---TSTTEEEEESBTTCGCGCSSTTEEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc---cccccceEEeehhccccccCCCeeEEEE
Confidence            578999999999999999994 333568999999999999999999874   3458999999999832111268999999


Q ss_pred             CCCCC--CccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRK--GLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~--Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.+..  .-...+++.+.++..++++++++
T Consensus        80 ~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~  109 (152)
T PF13847_consen   80 NGVLHHFPDPEKVLKNIIRLLKPGGILIIS  109 (152)
T ss_dssp             ESTGGGTSHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCchhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence            98743  22335666666655567777765

...

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.23  E-value=2.5e-10  Score=103.91  Aligned_cols=101  Identities=18%  Similarity=0.195  Sum_probs=81.6

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .+|++++|+|||||++++.+|......+|+|||.++++++..++|++++   +.+|++.+.||+.+.+... ..+|.||+
T Consensus        33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f---g~~n~~vv~g~Ap~~L~~~-~~~daiFI  108 (187)
T COG2242          33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF---GVDNLEVVEGDAPEALPDL-PSPDAIFI  108 (187)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh---CCCcEEEEeccchHhhcCC-CCCCEEEE
Confidence            4799999999999999999996655679999999999999999999984   3689999999999887654 37999999


Q ss_pred             CCCCCCccHHHHHHHHhc-CCCCcEEEE
Q 044572          377 DPPRKGLDSSLVHALQSI-GSAERKAKS  403 (457)
Q Consensus       377 DPPR~Gl~~~v~~~l~~~-~~~~~ivyv  403 (457)
                      .=- .+++ ++++..... ++.+++|.=
T Consensus       109 GGg-~~i~-~ile~~~~~l~~ggrlV~n  134 (187)
T COG2242         109 GGG-GNIE-EILEAAWERLKPGGRLVAN  134 (187)
T ss_pred             CCC-CCHH-HHHHHHHHHcCcCCeEEEE
Confidence            776 4444 566666654 444455443

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.22  E-value=1e-10  Score=122.03  Aligned_cols=84  Identities=25%  Similarity=0.187  Sum_probs=69.2

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .+|.+|||+|||+|..++++|... +..+|+++|+++.+++.+++|++..+   .++++++++|+.+......+.||.|+
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g---~~~v~~~~~Da~~l~~~~~~~fD~Vl  312 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK---LSSIEIKIADAERLTEYVQDTFDRIL  312 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCeEEEEECchhhhhhhhhccCCEEE
Confidence            478899999999999999999764 24599999999999999999999843   35799999998764322235799999


Q ss_pred             ECCCCCCc
Q 044572          376 VDPPRKGL  383 (457)
Q Consensus       376 ~DPPR~Gl  383 (457)
                      +|||..|.
T Consensus       313 ~DaPCsg~  320 (431)
T PRK14903        313 VDAPCTSL  320 (431)
T ss_pred             ECCCCCCC
Confidence            99998654

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.22  E-value=3.8e-10  Score=109.56  Aligned_cols=126  Identities=22%  Similarity=0.292  Sum_probs=89.6

Q ss_pred             eeEEEEECCC-CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          266 GGIDISLAPS-SFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       266 ~g~~~~i~~~-~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      +...+.++|+ +|-....+.+..+++.+.....++.+|||+|||+|.+++.+++ .++.+|+|+|+|+.+++.|++|++.
T Consensus        86 ~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~  164 (250)
T PRK00517         86 DEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQAVEAARENAEL  164 (250)
T ss_pred             CeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHH
Confidence            3456788875 6666666777777777776666789999999999999998876 4566899999999999999999987


Q ss_pred             CCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       345 ~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +  +..+++.+..+|.         .||+|+.|.-...+. .+++.+.+.-.+++.++++
T Consensus       165 ~--~~~~~~~~~~~~~---------~fD~Vvani~~~~~~-~l~~~~~~~LkpgG~lils  212 (250)
T PRK00517        165 N--GVELNVYLPQGDL---------KADVIVANILANPLL-ELAPDLARLLKPGGRLILS  212 (250)
T ss_pred             c--CCCceEEEccCCC---------CcCEEEEcCcHHHHH-HHHHHHHHhcCCCcEEEEE
Confidence            4  2224454444332         699999986533222 3444444443467777776

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=5.4e-11  Score=102.84  Aligned_cols=125  Identities=22%  Similarity=0.255  Sum_probs=95.4

Q ss_pred             CHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEc
Q 044572          281 NTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA  358 (457)
Q Consensus       281 n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~  358 (457)
                      .+..+..|+..|.+-..  +|++++|||||+|.+++..+. -+...|+|+|++++|++.+.+|++...    -++.+++.
T Consensus        29 ~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfE----vqidlLqc  103 (185)
T KOG3420|consen   29 RPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFE----VQIDLLQC  103 (185)
T ss_pred             cHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhh----hhhheeee
Confidence            46778888888877544  689999999999999987775 567899999999999999999998742    35689999


Q ss_pred             cCCcCcccccCCccEEEECCCC----CCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHH
Q 044572          359 DNSIEPLSWLVGSDVLVVDPPR----KGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWIL  421 (457)
Q Consensus       359 d~~~~~~~~~~~~D~vi~DPPR----~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~  421 (457)
                      |..+.... .+.||.+|+|||-    .|.+-+.+++..++.   +.||.       .++++.|+.+.
T Consensus       104 dildle~~-~g~fDtaviNppFGTk~~~aDm~fv~~al~~~---~~VyS-------LHKtSTRey~~  159 (185)
T KOG3420|consen  104 DILDLELK-GGIFDTAVINPPFGTKKKGADMEFVSAALKVA---SAVYS-------LHKTSTREYRY  159 (185)
T ss_pred             eccchhcc-CCeEeeEEecCCCCcccccccHHHHHHHHHHH---HHHHH-------HhcccHHHHHH
Confidence            98775443 2679999999993    467777776666553   14443       25666666554

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.21  E-value=4e-10  Score=111.69  Aligned_cols=147  Identities=14%  Similarity=0.060  Sum_probs=99.5

Q ss_pred             eeEEEEECCCCCCCCCHHHHHHH-HHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          266 GGIDISLAPSSFGQANTRAFDIL-LRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       266 ~g~~~~i~~~~FfQ~n~~~~~~l-~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      +...+.++|+..|......+..+ ++.+..+..++++|||+|||+|.+++.+++ .++.+|+|||+++.|++.|++|++.
T Consensus       126 ~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~  204 (288)
T TIGR00406       126 DALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAEL  204 (288)
T ss_pred             CcEEEEECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHH
Confidence            56778999988776544444444 344444445789999999999999999887 4567999999999999999999987


Q ss_pred             CCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHH
Q 044572          345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAK  424 (457)
Q Consensus       345 ~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~  424 (457)
                      +  +...++.+..++....   ...+||+|+.|.-...+. .++..+.+.-.+++.+++|     .........+.....
T Consensus       205 n--~~~~~~~~~~~~~~~~---~~~~fDlVvan~~~~~l~-~ll~~~~~~LkpgG~li~s-----gi~~~~~~~v~~~~~  273 (288)
T TIGR00406       205 N--QVSDRLQVKLIYLEQP---IEGKADVIVANILAEVIK-ELYPQFSRLVKPGGWLILS-----GILETQAQSVCDAYE  273 (288)
T ss_pred             c--CCCcceEEEecccccc---cCCCceEEEEecCHHHHH-HHHHHHHHHcCCCcEEEEE-----eCcHhHHHHHHHHHH
Confidence            4  3334567777663322   135799999987533222 3444444444577778876     333344444444443

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.20  E-value=3.3e-10  Score=104.62  Aligned_cols=100  Identities=20%  Similarity=0.140  Sum_probs=76.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      .+.+|||+|||+|.+++.+|......+|+|||.|+.+++.+++|++.+   +.+|++++++|+.+..  ..+.||+|+++
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~---~~~~i~~i~~d~~~~~--~~~~fD~I~s~  116 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL---GLNNVEIVNGRAEDFQ--HEEQFDVITSR  116 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh---CCCCeEEEecchhhcc--ccCCccEEEeh
Confidence            488999999999999999987654568999999999999999999874   2357999999998752  23689999998


Q ss_pred             CCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          378 PPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      . -..+ .++.+.+.++-.+++.+++.
T Consensus       117 ~-~~~~-~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       117 A-LASL-NVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             h-hhCH-HHHHHHHHHhcCCCCEEEEE
Confidence            6 2222 34556655543466666664

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.19  E-value=2.3e-10  Score=107.50  Aligned_cols=123  Identities=9%  Similarity=-0.054  Sum_probs=92.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC-CcCcccc-cCCccEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN-SIEPLSW-LVGSDVLV  375 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~-~~~~~~~-~~~~D~vi  375 (457)
                      ++.+|||+|||+|.+++.+|......+|+|||+|+++++.|++|++.+   ...|++++++|+ ....... ...||+|+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~---~~~~v~~~~~d~~~~l~~~~~~~~~D~V~  116 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE---GLTNLRLLCGDAVEVLLDMFPDGSLDRIY  116 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc---CCCCEEEEecCHHHHHHHHcCccccceEE
Confidence            578999999999999999987644468999999999999999999873   346899999998 4322112 25699999


Q ss_pred             ECCCC---C-------CccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhcc
Q 044572          376 VDPPR---K-------GLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASV  428 (457)
Q Consensus       376 ~DPPR---~-------Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~  428 (457)
                      ++.|.   .       .....+++.+.+.-++++.++++     +......+.+++.+.+.+.
T Consensus       117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~-----~~~~~~~~~~~~~~~~~g~  174 (202)
T PRK00121        117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA-----TDWEGYAEYMLEVLSAEGG  174 (202)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE-----cCCHHHHHHHHHHHHhCcc
Confidence            86432   1       12345777777655688888887     7777777777877777653

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.18  E-value=2.6e-10  Score=119.76  Aligned_cols=108  Identities=16%  Similarity=0.106  Sum_probs=82.8

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .+|++|||+|||+|..++.++... +..+|+|+|+++.+++.+++|++.+   +..+++++++|+.+...  ...||+|+
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~---g~~~v~~~~~Da~~~~~--~~~fD~Vl  323 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL---GITIIETIEGDARSFSP--EEQPDAIL  323 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh---CCCeEEEEeCccccccc--CCCCCEEE
Confidence            368899999999999999988643 2358999999999999999999884   33579999999977542  24799999


Q ss_pred             ECCCCCCccH------------------------HHHHHH-HhcCCCCcEEEEeccCCCCCchh
Q 044572          376 VDPPRKGLDS------------------------SLVHAL-QSIGSAERKAKSLSESSSSMVKE  414 (457)
Q Consensus       376 ~DPPR~Gl~~------------------------~v~~~l-~~~~~~~~ivyvs~~~~~c~~~~  414 (457)
                      +|||..|...                        +++... ..+++.+.++|.+     |+...
T Consensus       324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst-----cs~~~  382 (445)
T PRK14904        324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT-----CSIEP  382 (445)
T ss_pred             EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe-----CCCCh
Confidence            9999877431                        123322 2346778888887     77653

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.18  E-value=3.6e-10  Score=104.83  Aligned_cols=101  Identities=21%  Similarity=0.130  Sum_probs=76.3

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      ++++.+|||+|||+|.+++.+|+.....+|+|||+++++++.|++|++.++   .++++++++|+.+...  .+.||+|+
T Consensus        43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~---l~~i~~~~~d~~~~~~--~~~fDlV~  117 (187)
T PRK00107         43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG---LKNVTVVHGRAEEFGQ--EEKFDVVT  117 (187)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC---CCCEEEEeccHhhCCC--CCCccEEE
Confidence            445899999999999999999975556799999999999999999998843   3569999999987543  45899999


Q ss_pred             ECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          376 VDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       376 ~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      ++-  .+--..+++.+.++-.+++.+++
T Consensus       118 ~~~--~~~~~~~l~~~~~~LkpGG~lv~  143 (187)
T PRK00107        118 SRA--VASLSDLVELCLPLLKPGGRFLA  143 (187)
T ss_pred             Ecc--ccCHHHHHHHHHHhcCCCeEEEE
Confidence            863  11123566665544345555554

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.17  E-value=7.2e-10  Score=103.78  Aligned_cols=104  Identities=13%  Similarity=0.129  Sum_probs=76.9

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .++.+|||+|||+|.+++.+|+.. ...+|++||+++++++.|++|++.+  +..++++++.+|+.+.+......||.|+
T Consensus        39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~--g~~~~v~~~~~d~~~~l~~~~~~~D~V~  116 (198)
T PRK00377         39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF--GVLNNIVLIKGEAPEILFTINEKFDRIF  116 (198)
T ss_pred             CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh--CCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence            368999999999999999998753 3468999999999999999999874  2346899999998775443336799999


Q ss_pred             ECCCCCCccHHHHHHHH-hcCCCCcEEEE
Q 044572          376 VDPPRKGLDSSLVHALQ-SIGSAERKAKS  403 (457)
Q Consensus       376 ~DPPR~Gl~~~v~~~l~-~~~~~~~ivyv  403 (457)
                      ++.....+. .+++.+. .+++.+++++.
T Consensus       117 ~~~~~~~~~-~~l~~~~~~LkpgG~lv~~  144 (198)
T PRK00377        117 IGGGSEKLK-EIISASWEIIKKGGRIVID  144 (198)
T ss_pred             ECCCcccHH-HHHHHHHHHcCCCcEEEEE
Confidence            976433333 3455444 45544555543

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.16  E-value=1.2e-09  Score=101.21  Aligned_cols=101  Identities=16%  Similarity=0.147  Sum_probs=74.9

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.+++.+++.....+|+++|+++++++.|++|++.+   ...+++++++|+...+   ...||+|++
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~---~~~~i~~~~~d~~~~~---~~~~D~v~~  103 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF---GCGNIDIIPGEAPIEL---PGKADAIFI  103 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh---CCCCeEEEecCchhhc---CcCCCEEEE
Confidence            3678999999999999999998654469999999999999999999874   2357999999975322   357999999


Q ss_pred             CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +-....+ .++++.+.+.-.+++.+++.
T Consensus       104 ~~~~~~~-~~~l~~~~~~Lk~gG~lv~~  130 (187)
T PRK08287        104 GGSGGNL-TAIIDWSLAHLHPGGRLVLT  130 (187)
T ss_pred             CCCccCH-HHHHHHHHHhcCCCeEEEEE
Confidence            8654333 34555444433356665553

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.16  E-value=2e-10  Score=105.82  Aligned_cols=104  Identities=18%  Similarity=0.204  Sum_probs=71.1

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCE---------EEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRS---------VKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW  367 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~---------V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~  367 (457)
                      .+++.|||.+||+|+|-+++|.......         ++|+|+++++++.|++|++..  +....+.+.+.|+.+.. ..
T Consensus        27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a--g~~~~i~~~~~D~~~l~-~~  103 (179)
T PF01170_consen   27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA--GVEDYIDFIQWDARELP-LP  103 (179)
T ss_dssp             -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT--T-CGGEEEEE--GGGGG-GT
T ss_pred             CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc--ccCCceEEEecchhhcc-cc
Confidence            4688999999999999999987644333         889999999999999999985  34467899999998765 12


Q ss_pred             cCCccEEEECCCCC---CccH-------HHHHHHHhcCCCCcEEEEe
Q 044572          368 LVGSDVLVVDPPRK---GLDS-------SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       368 ~~~~D~vi~DPPR~---Gl~~-------~v~~~l~~~~~~~~ivyvs  404 (457)
                      .+.+|+||.|||+.   |...       .+.+.+.+.- .++.+++.
T Consensus       104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l-~~~~v~l~  149 (179)
T PF01170_consen  104 DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVL-KPRAVFLT  149 (179)
T ss_dssp             TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHS-TTCEEEEE
T ss_pred             cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHC-CCCEEEEE
Confidence            35799999999953   3322       2344555533 33777775

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.15  E-value=1.2e-09  Score=93.31  Aligned_cols=103  Identities=19%  Similarity=0.115  Sum_probs=77.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      .+.+|||+|||+|.++..+++..+..+|+++|.++.+++.|++|++.+   ...+++++.+|+..........||+|+++
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~v~~~   95 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF---GVSNIVIVEGDAPEALEDSLPEPDRVFIG   95 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh---CCCceEEEeccccccChhhcCCCCEEEEC
Confidence            578999999999999999998654468999999999999999998873   23578999999875433334689999998


Q ss_pred             CCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          378 PPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      -+.... .++++.+.+.-.+++.++++
T Consensus        96 ~~~~~~-~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        96 GSGGLL-QEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             CcchhH-HHHHHHHHHHcCCCCEEEEE
Confidence            653333 24555555544466666654

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.15  E-value=1.2e-09  Score=100.45  Aligned_cols=75  Identities=17%  Similarity=0.179  Sum_probs=63.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.+++.++....  +|+++|+++++++.|++|++.+  +  .+++++.+|+.+..   ...||+|+.|
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~--~--~~~~~~~~d~~~~~---~~~fD~Vi~n   89 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN--N--VGLDVVMTDLFKGV---RGKFDVILFN   89 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc--C--CceEEEEccccccc---CCcccEEEEC
Confidence            467899999999999999997543  8999999999999999999873  2  26899999987643   2479999999


Q ss_pred             CCCC
Q 044572          378 PPRK  381 (457)
Q Consensus       378 PPR~  381 (457)
                      ||..
T Consensus        90 ~p~~   93 (179)
T TIGR00537        90 PPYL   93 (179)
T ss_pred             CCCC
Confidence            9963

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.14  E-value=9.5e-10  Score=102.73  Aligned_cols=103  Identities=13%  Similarity=0.085  Sum_probs=74.2

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.+++.+|+..+..+|++||+|+++++.|++|++.+   ...+++++.+|+.+.+......+|.+++
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~---~~~~v~~~~~d~~~~~~~~~~~~d~v~~  115 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF---GVKNVEVIEGSAPECLAQLAPAPDRVCI  115 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh---CCCCeEEEECchHHHHhhCCCCCCEEEE
Confidence            3688999999999999999987544569999999999999999999874   2357999999987643333345788888


Q ss_pred             CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |... .+ .++++.+.+.-.+++.+++.
T Consensus       116 ~~~~-~~-~~~l~~~~~~LkpgG~li~~  141 (196)
T PRK07402        116 EGGR-PI-KEILQAVWQYLKPGGRLVAT  141 (196)
T ss_pred             ECCc-CH-HHHHHHHHHhcCCCeEEEEE
Confidence            7532 22 34555554433345444443

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.14  E-value=5.6e-10  Score=116.63  Aligned_cols=82  Identities=17%  Similarity=0.161  Sum_probs=67.1

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi  375 (457)
                      .+|++|||+|||+|..++.++...+..+|+|+|+++.+++.+++|++.++   . +++++++|+.+..... ...||.|+
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g---~-~~~~~~~D~~~~~~~~~~~~fD~Vl  318 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG---L-KATVIVGDARDPAQWWDGQPFDRIL  318 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC---C-CeEEEEcCcccchhhcccCCCCEEE
Confidence            46899999999999999999986533599999999999999999998843   2 3689999997642211 24699999


Q ss_pred             ECCCCCC
Q 044572          376 VDPPRKG  382 (457)
Q Consensus       376 ~DPPR~G  382 (457)
                      +|||..|
T Consensus       319 ~D~Pcs~  325 (427)
T PRK10901        319 LDAPCSA  325 (427)
T ss_pred             ECCCCCc
Confidence            9999765

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.12  E-value=1.3e-09  Score=102.65  Aligned_cols=111  Identities=17%  Similarity=0.162  Sum_probs=79.2

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572          286 DILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI  362 (457)
Q Consensus       286 ~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~  362 (457)
                      ..++..+.+.+  .++++|||+|||+|.++..++...+ ..+|+++|+++++++.|++|++.+  +..++++++.+|+.+
T Consensus        58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~--~~~~~v~~~~~d~~~  135 (205)
T PRK13944         58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL--GYWGVVEVYHGDGKR  135 (205)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCCCcEEEEECCccc
Confidence            34445555544  3678999999999999999987542 358999999999999999999874  233469999999976


Q ss_pred             CcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          363 EPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       363 ~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      .+.. ...||+|+++-.-..+.+++   +..++ +++.+.+
T Consensus       136 ~~~~-~~~fD~Ii~~~~~~~~~~~l---~~~L~-~gG~lvi  171 (205)
T PRK13944        136 GLEK-HAPFDAIIVTAAASTIPSAL---VRQLK-DGGVLVI  171 (205)
T ss_pred             CCcc-CCCccEEEEccCcchhhHHH---HHhcC-cCcEEEE
Confidence            5432 35799999997644443332   23455 4444444

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.11  E-value=6.4e-10  Score=103.84  Aligned_cols=121  Identities=9%  Similarity=0.000  Sum_probs=89.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc--cCCccEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW--LVGSDVLV  375 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~--~~~~D~vi  375 (457)
                      ...++||+|||+|.+++.+|.......|+|||+++++++.|++|++..   ...|++++++|+.+.....  ...+|.|+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~---~l~ni~~i~~d~~~~~~~~~~~~~~d~v~   92 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL---GLKNLHVLCGDANELLDKFFPDGSLSKVF   92 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh---CCCCEEEEccCHHHHHHhhCCCCceeEEE
Confidence            457899999999999999998755568999999999999999998873   3468999999997654322  23699999


Q ss_pred             ECCCC----------CCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHh
Q 044572          376 VDPPR----------KGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEA  426 (457)
Q Consensus       376 ~DPPR----------~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~  426 (457)
                      ++.|-          ..+...+++.+.+.-.+++.++++     .........+.+.+...
T Consensus        93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~-----td~~~~~~~~~~~~~~~  148 (194)
T TIGR00091        93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK-----TDNEPLFEDMLKVLSEN  148 (194)
T ss_pred             EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE-----eCCHHHHHHHHHHHHhC
Confidence            98651          122346777776655578888886     55555555555555443

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PHA03412 putative methyltransferase; Provisional

Probab=99.11  E-value=8.2e-10  Score=104.84  Aligned_cols=74  Identities=28%  Similarity=0.407  Sum_probs=60.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC---CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAAR---KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVL  374 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~---~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~v  374 (457)
                      .+.+|||+|||+|.+++.++++.   +..+|+|||+++.|++.|++|..        ++.++++|+....  ...+||+|
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--------~~~~~~~D~~~~~--~~~~FDlI  118 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--------EATWINADALTTE--FDTLFDMA  118 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--------CCEEEEcchhccc--ccCCccEE
Confidence            46899999999999999998742   23589999999999999998753        3689999987543  23579999


Q ss_pred             EECCCCC
Q 044572          375 VVDPPRK  381 (457)
Q Consensus       375 i~DPPR~  381 (457)
                      |.|||+.
T Consensus       119 IsNPPY~  125 (241)
T PHA03412        119 ISNPPFG  125 (241)
T ss_pred             EECCCCC
Confidence            9999964

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.11  E-value=9.2e-10  Score=111.15  Aligned_cols=102  Identities=16%  Similarity=0.149  Sum_probs=76.8

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++++|||+|||+|++.+.++..  ..+|+|+|+++.|++.|++|++..   +..+++++++|+.+.... .+.||+|++
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~---g~~~i~~~~~D~~~l~~~-~~~~D~Iv~  254 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHY---GIEDFFVKRGDATKLPLS-SESVDAIAT  254 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHh---CCCCCeEEecchhcCCcc-cCCCCEEEE
Confidence            47889999999999999998875  358999999999999999999874   234588999999875322 357999999


Q ss_pred             CCCCC---Cc--------cHHHHHHHHh-cCCCCcEEEEe
Q 044572          377 DPPRK---GL--------DSSLVHALQS-IGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~---Gl--------~~~v~~~l~~-~~~~~~ivyvs  404 (457)
                      |||+.   +.        ..++++.+.+ +++.++++++.
T Consensus       255 dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~  294 (329)
T TIGR01177       255 DPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV  294 (329)
T ss_pred             CCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence            99963   11        1234444443 45566677775

This family is found exclusively in the Archaea.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.10  E-value=1.1e-09  Score=100.01  Aligned_cols=98  Identities=14%  Similarity=0.135  Sum_probs=73.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.++..++.+  +.+|++||+++.+++.+++|+..     ..+++++++|+.+.... ...+|.|+.|
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~-~~~~d~vi~n   84 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDLP-KLQPYKVVGN   84 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCcc-ccCCCEEEEC
Confidence            5789999999999999999986  46999999999999999998753     25789999999876432 1358999999


Q ss_pred             CCCCCccHHHHHHHHhcCC--CCcEEEEe
Q 044572          378 PPRKGLDSSLVHALQSIGS--AERKAKSL  404 (457)
Q Consensus       378 PPR~Gl~~~v~~~l~~~~~--~~~ivyvs  404 (457)
                      ||+.-. ..++..+.....  .+.++.+.
T Consensus        85 ~Py~~~-~~~i~~~l~~~~~~~~~~l~~q  112 (169)
T smart00650       85 LPYNIS-TPILFKLLEEPPAFRDAVLMVQ  112 (169)
T ss_pred             CCcccH-HHHHHHHHhcCCCcceEEEEEE
Confidence            998643 345554444321  34444443

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.10  E-value=1e-09  Score=114.68  Aligned_cols=111  Identities=13%  Similarity=0.070  Sum_probs=81.4

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc-ccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS-WLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~-~~~~~D~vi  375 (457)
                      .+|++|||+|||+|..++.+|...+..+|+|+|+++++++.+++|++.++.  ..++.++.+|....... ....||.|+
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~--~~~v~~~~~d~~~~~~~~~~~~fD~Vl  314 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL--TIKAETKDGDGRGPSQWAENEQFDRIL  314 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEeccccccccccccccccCEEE
Confidence            368999999999999999999865446999999999999999999998532  22455577776543210 125699999


Q ss_pred             ECCCCCCcc------------------------HHHHHHH-HhcCCCCcEEEEeccCCCCCchh
Q 044572          376 VDPPRKGLD------------------------SSLVHAL-QSIGSAERKAKSLSESSSSMVKE  414 (457)
Q Consensus       376 ~DPPR~Gl~------------------------~~v~~~l-~~~~~~~~ivyvs~~~~~c~~~~  414 (457)
                      +|||.+|..                        .++++.. ..+++.+.++|++     |+-..
T Consensus       315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst-----cs~~~  373 (426)
T TIGR00563       315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT-----CSVLP  373 (426)
T ss_pred             EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe-----CCCCh
Confidence            999977642                        1233333 3356788899987     77543

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.07  E-value=1.2e-09  Score=108.19  Aligned_cols=100  Identities=16%  Similarity=0.180  Sum_probs=78.8

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572          287 ILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP  364 (457)
Q Consensus       287 ~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~  364 (457)
                      .+++.+.+.+  .++++|||+|||+|.++..++..  +.+|+|||+|+.+++.+++|++..  +...+++++++|+.+..
T Consensus        23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~--~~~~~v~ii~~Dal~~~   98 (294)
T PTZ00338         23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNS--PLASKLEVIEGDALKTE   98 (294)
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhc--CCCCcEEEEECCHhhhc
Confidence            3444444433  36889999999999999999975  458999999999999999998753  22468999999997643


Q ss_pred             ccccCCccEEEECCCCCCccHHHHHHHHh
Q 044572          365 LSWLVGSDVLVVDPPRKGLDSSLVHALQS  393 (457)
Q Consensus       365 ~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~  393 (457)
                         ...+|+||.|+|+...++.+.+.+..
T Consensus        99 ---~~~~d~VvaNlPY~Istpil~~ll~~  124 (294)
T PTZ00338         99 ---FPYFDVCVANVPYQISSPLVFKLLAH  124 (294)
T ss_pred             ---ccccCEEEecCCcccCcHHHHHHHhc
Confidence               24689999999999888776666643

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.06  E-value=2e-09  Score=102.82  Aligned_cols=75  Identities=19%  Similarity=0.206  Sum_probs=64.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      +|.+|||++||||-+++.+++..+..+|+|+|+|+.|++.|++.+...+   ..+++|+.+||+..... .+.||+|.+
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~---~~~i~fv~~dAe~LPf~-D~sFD~vt~  125 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG---VQNVEFVVGDAENLPFP-DNSFDAVTI  125 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC---ccceEEEEechhhCCCC-CCccCEEEe
Confidence            6899999999999999999998877899999999999999999887632   24599999999987643 468998866

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.01  E-value=5.6e-09  Score=98.86  Aligned_cols=79  Identities=19%  Similarity=0.113  Sum_probs=65.0

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .++.+|||+|||+|.++..+++..+. .+|++||+++++++.|++|++.+   +..|++++++|+...... ...||+|+
T Consensus        75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~---g~~~v~~~~gd~~~~~~~-~~~fD~I~  150 (212)
T PRK13942         75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL---GYDNVEVIVGDGTLGYEE-NAPYDRIY  150 (212)
T ss_pred             CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCCeEEEECCcccCCCc-CCCcCEEE
Confidence            47899999999999999999876432 59999999999999999999874   346899999998765432 35799999


Q ss_pred             ECCC
Q 044572          376 VDPP  379 (457)
Q Consensus       376 ~DPP  379 (457)
                      ++=-
T Consensus       151 ~~~~  154 (212)
T PRK13942        151 VTAA  154 (212)
T ss_pred             ECCC
Confidence            8743

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.98  E-value=5.5e-09  Score=100.44  Aligned_cols=115  Identities=16%  Similarity=0.084  Sum_probs=83.9

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572          286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP  364 (457)
Q Consensus       286 ~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~  364 (457)
                      ..++..+.... +.++|||+|||+|.-++.+|... +..+|+++|+++++++.|++|++.+  +..++++++.+|+.+.+
T Consensus        57 g~~L~~l~~~~-~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~--gl~~~i~~~~gda~~~L  133 (234)
T PLN02781         57 GLFLSMLVKIM-NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA--GVDHKINFIQSDALSAL  133 (234)
T ss_pred             HHHHHHHHHHh-CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEEccHHHHH
Confidence            34445555543 57899999999999888887642 2469999999999999999999985  34468999999998865


Q ss_pred             ccc-----cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          365 LSW-----LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       365 ~~~-----~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ..+     .+.||+|++|....... +.++.+..+-.+++++.+.
T Consensus       134 ~~l~~~~~~~~fD~VfiDa~k~~y~-~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        134 DQLLNNDPKPEFDFAFVDADKPNYV-HFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             HHHHhCCCCCCCCEEEECCCHHHHH-HHHHHHHHhcCCCeEEEEE
Confidence            443     24799999998754433 3445444443467776653

>PHA03411 putative methyltransferase; Provisional

Probab=98.98  E-value=2.5e-09  Score=103.73  Aligned_cols=75  Identities=24%  Similarity=0.294  Sum_probs=61.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      .+.+|||+|||+|.+++.++.+.+..+|+|||+++.|++.|++|.        .+++++++|+.+...  ...||+||.|
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--------~~v~~v~~D~~e~~~--~~kFDlIIsN  133 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--------PEAEWITSDVFEFES--NEKFDVVISN  133 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--------cCCEEEECchhhhcc--cCCCcEEEEc
Confidence            457899999999999999987643469999999999999998863        257899999987542  3579999999


Q ss_pred             CCCCC
Q 044572          378 PPRKG  382 (457)
Q Consensus       378 PPR~G  382 (457)
                      ||+..
T Consensus       134 PPF~~  138 (279)
T PHA03411        134 PPFGK  138 (279)
T ss_pred             CCccc
Confidence            99753

>PRK14968 putative methyltransferase; Provisional

Probab=98.97  E-value=1.3e-08  Score=93.80  Aligned_cols=89  Identities=17%  Similarity=0.148  Sum_probs=67.9

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc
Q 044572          286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL  365 (457)
Q Consensus       286 ~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~  365 (457)
                      ..|.+.+..  .++.+|||+|||+|.+++.++..  ..+|+|+|+++++++.+++|++.++.. ..++.++.+|+.+...
T Consensus        13 ~~l~~~~~~--~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~~~~   87 (188)
T PRK14968         13 FLLAENAVD--KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIR-NNGVEVIRSDLFEPFR   87 (188)
T ss_pred             HHHHHhhhc--cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCC-CcceEEEecccccccc
Confidence            444444332  46789999999999999999986  369999999999999999999874211 1128899999866432


Q ss_pred             cccCCccEEEECCCCC
Q 044572          366 SWLVGSDVLVVDPPRK  381 (457)
Q Consensus       366 ~~~~~~D~vi~DPPR~  381 (457)
                      .  ..||+|+.|||..
T Consensus        88 ~--~~~d~vi~n~p~~  101 (188)
T PRK14968         88 G--DKFDVILFNPPYL  101 (188)
T ss_pred             c--cCceEEEECCCcC
Confidence            2  3799999999964

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.96  E-value=7.9e-09  Score=101.62  Aligned_cols=102  Identities=19%  Similarity=0.210  Sum_probs=73.5

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEcc
Q 044572          280 ANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD  359 (457)
Q Consensus       280 ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d  359 (457)
                      .|....+.+++.+.  +.++.+|||+|||+|.++..++...  .+|+|||+++++++.+++|...      .+++++++|
T Consensus        26 ~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~------~~v~~i~~D   95 (272)
T PRK00274         26 IDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE------DNLTIIEGD   95 (272)
T ss_pred             CCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc------CceEEEECh
Confidence            34445544444321  2367899999999999999999864  4999999999999999887632      579999999


Q ss_pred             CCcCcccccCCccEEEECCCCCCccHHHHHHHHh
Q 044572          360 NSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQS  393 (457)
Q Consensus       360 ~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~  393 (457)
                      +.+..... ..++.||.|||+.-.. .++..+..
T Consensus        96 ~~~~~~~~-~~~~~vv~NlPY~iss-~ii~~~l~  127 (272)
T PRK00274         96 ALKVDLSE-LQPLKVVANLPYNITT-PLLFHLLE  127 (272)
T ss_pred             hhcCCHHH-cCcceEEEeCCccchH-HHHHHHHh
Confidence            98753211 0158999999975544 45554544

>PRK04457 spermidine synthase; Provisional

Probab=98.94  E-value=2.4e-08  Score=97.55  Aligned_cols=123  Identities=13%  Similarity=0.056  Sum_probs=88.9

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      +...+|||+|||+|.++..++...+..+|++||+++++++.|+++....  ...++++++.+|+.+++.....+||+|++
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~--~~~~rv~v~~~Da~~~l~~~~~~yD~I~~  142 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP--ENGERFEVIEADGAEYIAVHRHSTDVILV  142 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC--CCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence            3568899999999999999987665678999999999999999997642  22468999999998766544467999999


Q ss_pred             CCCCC-C-----ccHHHHHHHHhcCCCCcEEEEeccCCCCCc-hhchhhHHHHHHHh
Q 044572          377 DPPRK-G-----LDSSLVHALQSIGSAERKAKSLSESSSSMV-KEEKRPWILRAKEA  426 (457)
Q Consensus       377 DPPR~-G-----l~~~v~~~l~~~~~~~~ivyvs~~~~~c~~-~~~~~~~~~~~~~~  426 (457)
                      |.-.. +     ...++++.+.+.-.+++++.+.     ... ......++..++..
T Consensus       143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin-----~~~~~~~~~~~l~~l~~~  194 (262)
T PRK04457        143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN-----LWSRDKRYDRYLERLESS  194 (262)
T ss_pred             eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE-----cCCCchhHHHHHHHHHHh
Confidence            96322 2     1246777776655577777775     222 22345555555544

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.94  E-value=1.8e-08  Score=95.29  Aligned_cols=98  Identities=20%  Similarity=0.143  Sum_probs=73.8

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.++..++...  .+|++||+++++++.|++|++.+   ...+++++.+|+.+.+.. .+.||+|++
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~-~~~fD~I~~  150 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQL---GLHNVSVRHGDGWKGWPA-YAPFDRILV  150 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHC---CCCceEEEECCcccCCCc-CCCcCEEEE
Confidence            367899999999999999888764  48999999999999999999874   345799999998654322 357999999


Q ss_pred             CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.+...+...+   ...++ +++.+.+.
T Consensus       151 ~~~~~~~~~~l---~~~L~-~gG~lv~~  174 (212)
T PRK00312        151 TAAAPEIPRAL---LEQLK-EGGILVAP  174 (212)
T ss_pred             ccCchhhhHHH---HHhcC-CCcEEEEE
Confidence            98765443332   23344 45555554

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.93  E-value=1.8e-08  Score=101.09  Aligned_cols=99  Identities=18%  Similarity=0.151  Sum_probs=72.6

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .++++|||+|||+|.+++.+|+..+. .+|++||+++++++.|++|++.+   +.+|+.++++|+.+..... ..||+|+
T Consensus        79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~---g~~nV~~i~gD~~~~~~~~-~~fD~Ii  154 (322)
T PRK13943         79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL---GIENVIFVCGDGYYGVPEF-APYDVIF  154 (322)
T ss_pred             CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc---CCCcEEEEeCChhhccccc-CCccEEE
Confidence            46889999999999999999986542 37999999999999999999874   3468999999987654332 5699999


Q ss_pred             ECCCCCCccHHHHHHHHhcCCCCcEEE
Q 044572          376 VDPPRKGLDSSLVHALQSIGSAERKAK  402 (457)
Q Consensus       376 ~DPPR~Gl~~~v~~~l~~~~~~~~ivy  402 (457)
                      ++-   |+..-....+..+++.++++.
T Consensus       155 ~~~---g~~~ip~~~~~~LkpgG~Lvv  178 (322)
T PRK13943        155 VTV---GVDEVPETWFTQLKEGGRVIV  178 (322)
T ss_pred             ECC---chHHhHHHHHHhcCCCCEEEE
Confidence            974   332222233445554444443

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.93  E-value=1.2e-08  Score=101.01  Aligned_cols=126  Identities=17%  Similarity=0.104  Sum_probs=85.3

Q ss_pred             eEEEEECCCCCCCCCHH---HHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHh
Q 044572          267 GIDISLAPSSFGQANTR---AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS  343 (457)
Q Consensus       267 g~~~~i~~~~FfQ~n~~---~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~  343 (457)
                      .++|...+..||+.+..   ....++.. ...+ ++.+|||+|||+|.+++.+|..+  .+|+|||+|+.|++.+++|++
T Consensus        88 ~l~fy~~~~~~f~~~~~~~~~~~~~~~~-~~~~-~~~~vLDlGcG~G~~~~~la~~g--~~V~avD~s~~ai~~~~~~~~  163 (287)
T PRK12335         88 QLSFYCKPEDYFHKKYNLTATHSEVLEA-VQTV-KPGKALDLGCGQGRNSLYLALLG--FDVTAVDINQQSLENLQEIAE  163 (287)
T ss_pred             EEEEEEcchhhHhhhhccccccHHHHHH-hhcc-CCCCEEEeCCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHH
Confidence            56688888888876642   12223332 2223 35599999999999999999853  499999999999999999988


Q ss_pred             hCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCc----cHHHHHHHHhcCCCCcEEE
Q 044572          344 RLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGL----DSSLVHALQSIGSAERKAK  402 (457)
Q Consensus       344 ~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl----~~~v~~~l~~~~~~~~ivy  402 (457)
                      .+  + . ++++...|+....  ..+.||+|+..---.-+    -..+++.+.++..++++++
T Consensus       164 ~~--~-l-~v~~~~~D~~~~~--~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l  220 (287)
T PRK12335        164 KE--N-L-NIRTGLYDINSAS--IQEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNL  220 (287)
T ss_pred             Hc--C-C-ceEEEEechhccc--ccCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            73  2 2 6888888886532  24679999875421111    1245666555444555533

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.92  E-value=9.6e-09  Score=99.96  Aligned_cols=103  Identities=14%  Similarity=0.108  Sum_probs=74.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      .+.+|||+|||+|.+++.++...  .+|+|||+|+++++.|+++++..  +...+++++++|+.+......+.||+|++.
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~--g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~  119 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAK--GVSDNMQFIHCAAQDIAQHLETPVDLILFH  119 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc--CCccceEEEEcCHHHHhhhcCCCCCEEEeh
Confidence            56799999999999999999863  59999999999999999998763  334689999999876532223579999864


Q ss_pred             CCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          378 PPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      -.-.-+  ...+++.+.++-.+++++.+.
T Consensus       120 ~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        120 AVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             hHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence            331100  124556665544466666553

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.90  E-value=2.5e-08  Score=96.62  Aligned_cols=105  Identities=11%  Similarity=0.084  Sum_probs=75.4

Q ss_pred             hCCCCCeEEEEcccccHHHHHHHhh--CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCcc
Q 044572          295 YVPYGASVTDLYAGAGVIGLSLAAA--RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSD  372 (457)
Q Consensus       295 ~~~~~~~vLDl~cG~G~~sl~lA~~--~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D  372 (457)
                      .+.++.+|||+|||+|.+++.+++.  ....+|+|||+|+.|++.|++|++..  +...+++++++|+.+...   ..+|
T Consensus        53 ~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~--~~~~~v~~~~~d~~~~~~---~~~D  127 (247)
T PRK15451         53 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY--KAPTPVDVIEGDIRDIAI---ENAS  127 (247)
T ss_pred             hCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEeCChhhCCC---CCCC
Confidence            3457889999999999999988863  22358999999999999999998763  234579999999876532   3588


Q ss_pred             EEEECCCCCCcc----HHHHHHHHhcCCCCcEEEEe
Q 044572          373 VLVVDPPRKGLD----SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       373 ~vi~DPPR~Gl~----~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|++.-.-.-++    ..+++.+.+.-.+++.++++
T Consensus       128 ~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~  163 (247)
T PRK15451        128 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLS  163 (247)
T ss_pred             EEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            888754321111    24566665554567776664

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.89  E-value=5.3e-09  Score=105.30  Aligned_cols=96  Identities=16%  Similarity=0.147  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCC---------------------------------CC---
Q 044572          282 TRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARK---------------------------------CR---  323 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~---------------------------------~~---  323 (457)
                      ....+.|...++.+..  +++.++|-.||+|+|.+.+|..+.                                 +.   
T Consensus       173 ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~  252 (381)
T COG0116         173 APLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK  252 (381)
T ss_pred             CCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence            3445566666655443  567899999999999999998642                                 00   


Q ss_pred             ---EEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCC
Q 044572          324 ---SVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPR  380 (457)
Q Consensus       324 ---~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR  380 (457)
                         .++|+|+++.+++.|+.|++..  +..+-|+|.++|+.++.... ..+|+||.|||+
T Consensus       253 ~~~~~~G~Did~r~i~~Ak~NA~~A--Gv~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPY  309 (381)
T COG0116         253 ELPIIYGSDIDPRHIEGAKANARAA--GVGDLIEFKQADATDLKEPL-EEYGVVISNPPY  309 (381)
T ss_pred             ccceEEEecCCHHHHHHHHHHHHhc--CCCceEEEEEcchhhCCCCC-CcCCEEEeCCCc
Confidence               3779999999999999999985  45678999999998765443 679999999995

>PLN02476 O-methyltransferase

Probab=98.89  E-value=1.7e-08  Score=98.80  Aligned_cols=120  Identities=13%  Similarity=0.028  Sum_probs=87.8

Q ss_pred             CCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044572          279 QANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN  357 (457)
Q Consensus       279 Q~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~  357 (457)
                      +....+. .++..+.... ..++|||+|+|+|..++.+|...+ ..+|+++|.++++++.|++|++.+  +..++|+++.
T Consensus       101 ~v~~~~g-~lL~~L~~~~-~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a--Gl~~~I~li~  176 (278)
T PLN02476        101 QVSPDQA-QLLAMLVQIL-GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA--GVSHKVNVKH  176 (278)
T ss_pred             ccCHHHH-HHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEE
Confidence            3334443 4445555544 578999999999999999997422 348999999999999999999985  3446899999


Q ss_pred             ccCCcCcccc-----cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          358 ADNSIEPLSW-----LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       358 ~d~~~~~~~~-----~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      ||+.+.+..+     .+.||+||+|.+...... ..+.+..+-.+++++.+
T Consensus       177 GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~-y~e~~l~lL~~GGvIV~  226 (278)
T PLN02476        177 GLAAESLKSMIQNGEGSSYDFAFVDADKRMYQD-YFELLLQLVRVGGVIVM  226 (278)
T ss_pred             cCHHHHHHHHHhcccCCCCCEEEECCCHHHHHH-HHHHHHHhcCCCcEEEE
Confidence            9998876543     247999999999765544 44444444346777665

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.89  E-value=2.2e-08  Score=100.11  Aligned_cols=109  Identities=17%  Similarity=0.148  Sum_probs=76.4

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC--CCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK--SVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~--~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      ++.+|||+|||+|.+++.+++.+  .+|+|+|+|+.|++.|++|++....  +...+++|..+|+.+.    .+.||+|+
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g--~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv  217 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEG--AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVT  217 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEE
Confidence            47899999999999999999753  4899999999999999999875311  1134688999997543    35789775


Q ss_pred             -----ECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHH
Q 044572          376 -----VDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWI  420 (457)
Q Consensus       376 -----~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~  420 (457)
                           ...|+.... .+++.+..+.  ++.++++     |.+......+.
T Consensus       218 ~~~vL~H~p~~~~~-~ll~~l~~l~--~g~liIs-----~~p~~~~~~~l  259 (315)
T PLN02585        218 CLDVLIHYPQDKAD-GMIAHLASLA--EKRLIIS-----FAPKTLYYDIL  259 (315)
T ss_pred             EcCEEEecCHHHHH-HHHHHHHhhc--CCEEEEE-----eCCcchHHHHH
Confidence                 345554332 4566666654  3455777     66665544443

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.89  E-value=7.1e-08  Score=92.16  Aligned_cols=103  Identities=13%  Similarity=0.075  Sum_probs=73.2

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .++.+|||+|||+|.++..++...+ ..+|+|+|+++.+++.|++|++..   ..++++++++|+.+.... .+.||+|+
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~-~~~fD~V~  119 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA---GLHNVELVHGNAMELPFD-DNSFDYVT  119 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc---CCCceEEEEechhcCCCC-CCCccEEE
Confidence            3688999999999999999997533 358999999999999999998763   236899999999775321 35799998


Q ss_pred             ECCCCCCc--cHHHHHHHHhcCCCCcEEEE
Q 044572          376 VDPPRKGL--DSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       376 ~DPPR~Gl--~~~v~~~l~~~~~~~~ivyv  403 (457)
                      ++-.-.-+  ...+++.+.+...+++.+.+
T Consensus       120 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~  149 (231)
T TIGR02752       120 IGFGLRNVPDYMQVLREMYRVVKPGGKVVC  149 (231)
T ss_pred             EecccccCCCHHHHHHHHHHHcCcCeEEEE
Confidence            86442111  12345544443335554444

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.89  E-value=2e-08  Score=98.04  Aligned_cols=95  Identities=17%  Similarity=0.184  Sum_probs=73.0

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEcc
Q 044572          280 ANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD  359 (457)
Q Consensus       280 ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d  359 (457)
                      .+....+.+++.+.  +.++++|||+|||+|.+++.+++.  +.+|+|||+++.+++.+++++..     ..|++++++|
T Consensus        13 ~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D   83 (258)
T PRK14896         13 IDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGD   83 (258)
T ss_pred             CCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc-----CCCEEEEEec
Confidence            44555555554321  236889999999999999999986  45999999999999999988753     2589999999


Q ss_pred             CCcCcccccCCccEEEECCCCCCccHH
Q 044572          360 NSIEPLSWLVGSDVLVVDPPRKGLDSS  386 (457)
Q Consensus       360 ~~~~~~~~~~~~D~vi~DPPR~Gl~~~  386 (457)
                      +.+..   ...+|.||.|||+.-.++.
T Consensus        84 ~~~~~---~~~~d~Vv~NlPy~i~s~~  107 (258)
T PRK14896         84 ALKVD---LPEFNKVVSNLPYQISSPI  107 (258)
T ss_pred             cccCC---chhceEEEEcCCcccCcHH
Confidence            97743   2358999999998654443

>PLN02244 tocopherol O-methyltransferase

Probab=98.89  E-value=4.2e-08  Score=99.53  Aligned_cols=118  Identities=13%  Similarity=0.100  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHhhC-------CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEE
Q 044572          283 RAFDILLRKLQKYV-------PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISW  355 (457)
Q Consensus       283 ~~~~~l~~~i~~~~-------~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~  355 (457)
                      .....+++.+.+++       .++.+|||+|||+|.+++.+++..+ .+|+|||+|+.+++.|+++++..  +..++++|
T Consensus        96 ~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g-~~v~gvD~s~~~i~~a~~~~~~~--g~~~~v~~  172 (340)
T PLN02244         96 QAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYG-ANVKGITLSPVQAARANALAAAQ--GLSDKVSF  172 (340)
T ss_pred             HHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhc--CCCCceEE
Confidence            33344555555543       3578999999999999999998643 48999999999999999998763  33467999


Q ss_pred             EEccCCcCcccccCCccEEEECCCC--CCccHHHHHHHHhcCCCCcEEEEe
Q 044572          356 HNADNSIEPLSWLVGSDVLVVDPPR--KGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       356 ~~~d~~~~~~~~~~~~D~vi~DPPR--~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.+|+.+.... .+.||+|+..=--  ..-...+++.+.+...+++.+++.
T Consensus       173 ~~~D~~~~~~~-~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~  222 (340)
T PLN02244        173 QVADALNQPFE-DGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIV  222 (340)
T ss_pred             EEcCcccCCCC-CCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence            99999775322 3579999873211  001124555555443455555553

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.88  E-value=2.8e-08  Score=93.04  Aligned_cols=96  Identities=19%  Similarity=0.061  Sum_probs=69.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.+++.+|+.+  .+|+|+|+|+.|++.|+++++..   ...+++++.+|+.+..  +...||+|+..
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g--~~V~gvD~S~~~i~~a~~~~~~~---~~~~v~~~~~d~~~~~--~~~~fD~I~~~  102 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANG--FDVTAWDKNPMSIANLERIKAAE---NLDNLHTAVVDLNNLT--FDGEYDFILST  102 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHc---CCCcceEEecChhhCC--cCCCcCEEEEe
Confidence            46899999999999999999853  49999999999999999998763   3357899999987642  23569999865


Q ss_pred             CCCCCcc----HHHHHHHHhcCCCCcE
Q 044572          378 PPRKGLD----SSLVHALQSIGSAERK  400 (457)
Q Consensus       378 PPR~Gl~----~~v~~~l~~~~~~~~i  400 (457)
                      -.-.-++    ..+++.+.++-.+++.
T Consensus       103 ~~~~~~~~~~~~~~l~~i~~~LkpgG~  129 (197)
T PRK11207        103 VVLMFLEAKTIPGLIANMQRCTKPGGY  129 (197)
T ss_pred             cchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence            3321111    2345555544345554

>PRK04266 fibrillarin; Provisional

Probab=98.88  E-value=3.8e-08  Score=94.06  Aligned_cols=101  Identities=15%  Similarity=0.014  Sum_probs=71.3

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccccCCccEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDVL  374 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D~v  374 (457)
                      .++.+|||+|||+|.+++.+|...+..+|+|+|++++|++.+.++++..     .|+.++.+|+....  ......+|+|
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-----~nv~~i~~D~~~~~~~~~l~~~~D~i  145 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-----KNIIPILADARKPERYAHVVEKVDVI  145 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-----CCcEEEECCCCCcchhhhccccCCEE
Confidence            4789999999999999999998754458999999999999988887651     57899999986521  1123469999


Q ss_pred             EECCCCCCccHHHHHHHH-hcCCCCcEEEE
Q 044572          375 VVDPPRKGLDSSLVHALQ-SIGSAERKAKS  403 (457)
Q Consensus       375 i~DPPR~Gl~~~v~~~l~-~~~~~~~ivyv  403 (457)
                      +.|-+-......+++.+. .++ +++.+.+
T Consensus       146 ~~d~~~p~~~~~~L~~~~r~LK-pGG~lvI  174 (226)
T PRK04266        146 YQDVAQPNQAEIAIDNAEFFLK-DGGYLLL  174 (226)
T ss_pred             EECCCChhHHHHHHHHHHHhcC-CCcEEEE
Confidence            987552111112344444 455 5555444

>PRK00811 spermidine synthase; Provisional

Probab=98.87  E-value=3e-08  Score=98.05  Aligned_cols=128  Identities=16%  Similarity=0.090  Sum_probs=87.4

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC--CCCcEEEEEccCCcCcccccCCccEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS--VDGNISWHNADNSIEPLSWLVGSDVL  374 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~--~~~nv~~~~~d~~~~~~~~~~~~D~v  374 (457)
                      +..++|||+|||.|.++..+++..+..+|++||+++++++.|+++......+  ...+++++.+|+.+++....++||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            3568999999999999999987656779999999999999999987643211  24689999999987665434679999


Q ss_pred             EECC--CCCCc-----cHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHh
Q 044572          375 VVDP--PRKGL-----DSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEA  426 (457)
Q Consensus       375 i~DP--PR~Gl-----~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~  426 (457)
                      |+|.  |. +.     ..++.+.+.+.-.+++++.+.+.+.. ........+...+++.
T Consensus       155 i~D~~dp~-~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~-~~~~~~~~i~~tl~~~  211 (283)
T PRK00811        155 IVDSTDPV-GPAEGLFTKEFYENCKRALKEDGIFVAQSGSPF-YQADEIKDMHRKLKEV  211 (283)
T ss_pred             EECCCCCC-CchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcc-cCHHHHHHHHHHHHHH
Confidence            9995  33 22     23455555555457777666422211 1122344444454444

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.87  E-value=3.1e-08  Score=96.78  Aligned_cols=79  Identities=22%  Similarity=0.245  Sum_probs=60.9

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .++.+|||+|||+|.++..++...+ ..+|+|||+|++|++.|++++.........+++++++|+.+.... .+.||+|+
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~-~~sfD~V~  150 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFD-DCYFDAIT  150 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCC-CCCEeEEE
Confidence            4688999999999999999987533 258999999999999998775421112345899999999875422 35799987


Q ss_pred             E
Q 044572          376 V  376 (457)
Q Consensus       376 ~  376 (457)
                      +
T Consensus       151 ~  151 (261)
T PLN02233        151 M  151 (261)
T ss_pred             E
Confidence            6

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.86  E-value=6.7e-09  Score=98.00  Aligned_cols=94  Identities=19%  Similarity=0.126  Sum_probs=75.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE-
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV-  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~-  376 (457)
                      .|.+|||+|||-|.++..+|+.+  .+|+|+|+++++|+.|+..+...+    -++.|.+.++++.... .++||+|+. 
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~g----v~i~y~~~~~edl~~~-~~~FDvV~cm  131 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESG----VNIDYRQATVEDLASA-GGQFDVVTCM  131 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhcc----ccccchhhhHHHHHhc-CCCccEEEEh
Confidence            58999999999999999999864  599999999999999999988732    2467888888775432 268999975 


Q ss_pred             -------CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 -------DPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 -------DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                             ||      ..++..+.++-+|++++++|
T Consensus       132 EVlEHv~dp------~~~~~~c~~lvkP~G~lf~S  160 (243)
T COG2227         132 EVLEHVPDP------ESFLRACAKLVKPGGILFLS  160 (243)
T ss_pred             hHHHccCCH------HHHHHHHHHHcCCCcEEEEe
Confidence                   44      24677777766788999998

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.86  E-value=1e-08  Score=102.38  Aligned_cols=83  Identities=18%  Similarity=0.143  Sum_probs=62.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE-ccCCcCccc---ccCCccE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN-ADNSIEPLS---WLVGSDV  373 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~-~d~~~~~~~---~~~~~D~  373 (457)
                      .+.++||+|||+|.+...++.+....+++|+|+++.|++.|++|++.|. +..++++++. .|.......   ..+.||+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np-~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl  192 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANP-GLNGAIRLRLQKDSKAIFKGIIHKNERFDA  192 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcc-CCcCcEEEEEccchhhhhhcccccCCceEE
Confidence            3578999999999998888765444589999999999999999999841 2446788754 443332221   1347999


Q ss_pred             EEECCCCC
Q 044572          374 LVVDPPRK  381 (457)
Q Consensus       374 vi~DPPR~  381 (457)
                      |+.|||+.
T Consensus       193 ivcNPPf~  200 (321)
T PRK11727        193 TLCNPPFH  200 (321)
T ss_pred             EEeCCCCc
Confidence            99999974

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.83  E-value=1.3e-08  Score=97.81  Aligned_cols=101  Identities=21%  Similarity=0.154  Sum_probs=65.1

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .+|.+|||++||||.++..+++..+ ..+|+|+|+|+.|++.|++.++..   ...+|+|+++|+++.... .+.||+|+
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~---~~~~i~~v~~da~~lp~~-d~sfD~v~  121 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE---GLQNIEFVQGDAEDLPFP-DNSFDAVT  121 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT---T--SEEEEE-BTTB--S--TT-EEEEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh---CCCCeeEEEcCHHHhcCC-CCceeEEE
Confidence            4689999999999999999997643 358999999999999999998873   235899999999886533 36799987


Q ss_pred             ECCCCCCc------cHHHHHHHHhcCCCCcEEEEe
Q 044572          376 VDPPRKGL------DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~Gl------~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +   ..|+      ...+.+..+-+++.++++.+.
T Consensus       122 ~---~fglrn~~d~~~~l~E~~RVLkPGG~l~ile  153 (233)
T PF01209_consen  122 C---SFGLRNFPDRERALREMYRVLKPGGRLVILE  153 (233)
T ss_dssp             E---ES-GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             H---HhhHHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence            6   1222      122334444455555566655

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK10742 putative methyltransferase; Provisional

Probab=98.83  E-value=2.9e-08  Score=94.89  Aligned_cols=83  Identities=20%  Similarity=0.201  Sum_probs=68.2

Q ss_pred             CCCC--eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC----C--CCCcEEEEEccCCcCccccc
Q 044572          297 PYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK----S--VDGNISWHNADNSIEPLSWL  368 (457)
Q Consensus       297 ~~~~--~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~----~--~~~nv~~~~~d~~~~~~~~~  368 (457)
                      ++|.  +|||+++|+|..|+.+|.+ |++ |++||.++.+....+.|++....    +  ...+++.+++|+.+++....
T Consensus        85 k~g~~p~VLD~TAGlG~Da~~las~-G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~  162 (250)
T PRK10742         85 KGDYLPDVVDATAGLGRDAFVLASV-GCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT  162 (250)
T ss_pred             CCCCCCEEEECCCCccHHHHHHHHc-CCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence            3566  8999999999999999975 554 99999999999999999887310    1  12579999999998876655


Q ss_pred             CCccEEEECCCCC
Q 044572          369 VGSDVLVVDPPRK  381 (457)
Q Consensus       369 ~~~D~vi~DPPR~  381 (457)
                      ..||+|++|||+.
T Consensus       163 ~~fDVVYlDPMfp  175 (250)
T PRK10742        163 PRPQVVYLDPMFP  175 (250)
T ss_pred             CCCcEEEECCCCC
Confidence            5799999999964

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.83  E-value=4.1e-08  Score=98.50  Aligned_cols=96  Identities=14%  Similarity=0.101  Sum_probs=74.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE-
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV-  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~-  376 (457)
                      ++.+|||+|||+|.++..+|+.+  .+|+|||.++++++.|+++++..  ....+++++++|+++... ..+.||+|++ 
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g--~~V~GID~s~~~i~~Ar~~~~~~--~~~~~i~~~~~dae~l~~-~~~~FD~Vi~~  205 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMG--ATVTGVDAVDKNVKIARLHADMD--PVTSTIEYLCTTAEKLAD-EGRKFDAVLSL  205 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhc--CcccceeEEecCHHHhhh-ccCCCCEEEEh
Confidence            46799999999999999999752  48999999999999999987652  223589999999876532 2357999975 


Q ss_pred             -------CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 -------DPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 -------DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                             ||      ..+++.+.++-.+++.++++
T Consensus       206 ~vLeHv~d~------~~~L~~l~r~LkPGG~liis  234 (322)
T PLN02396        206 EVIEHVANP------AEFCKSLSALTIPNGATVLS  234 (322)
T ss_pred             hHHHhcCCH------HHHHHHHHHHcCCCcEEEEE
Confidence                   43      25777777665677777776

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.81  E-value=4e-08  Score=93.33  Aligned_cols=84  Identities=25%  Similarity=0.307  Sum_probs=65.0

Q ss_pred             HHHHHHHHHhhCC----CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572          285 FDILLRKLQKYVP----YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN  360 (457)
Q Consensus       285 ~~~l~~~i~~~~~----~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~  360 (457)
                      .+.+.+.+.+++.    ++.+|||+|||+|.++..++..  ..+|+|||+|+++++.|++++...  +...++.|..+|+
T Consensus        38 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~--~~~~~i~~~~~d~  113 (219)
T TIGR02021        38 RAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGR--DVAGNVEFEVNDL  113 (219)
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc--CCCCceEEEECCh
Confidence            3445555555443    4789999999999999999975  349999999999999999998763  2235799999998


Q ss_pred             CcCcccccCCccEEEE
Q 044572          361 SIEPLSWLVGSDVLVV  376 (457)
Q Consensus       361 ~~~~~~~~~~~D~vi~  376 (457)
                      ....    +.||+|+.
T Consensus       114 ~~~~----~~fD~ii~  125 (219)
T TIGR02021       114 LSLC----GEFDIVVC  125 (219)
T ss_pred             hhCC----CCcCEEEE
Confidence            7643    57998864

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.79  E-value=7.6e-08  Score=89.92  Aligned_cols=98  Identities=16%  Similarity=0.035  Sum_probs=69.4

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      .+.+|||+|||+|.+++.+|.++  .+|+|+|+|+.|++.++++++..  + . ++.+..+|+....  ..+.||+|+..
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~s~~~l~~a~~~~~~~--~-~-~v~~~~~d~~~~~--~~~~fD~I~~~  101 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAG--YDVRAWDHNPASIASVLDMKARE--N-L-PLRTDAYDINAAA--LNEDYDFIFST  101 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHHh--C-C-CceeEeccchhcc--ccCCCCEEEEe
Confidence            46799999999999999999853  48999999999999999988763  2 2 3677778875432  23579999887


Q ss_pred             CCCCCcc----HHHHHHHHhcCCCCcE-EEE
Q 044572          378 PPRKGLD----SSLVHALQSIGSAERK-AKS  403 (457)
Q Consensus       378 PPR~Gl~----~~v~~~l~~~~~~~~i-vyv  403 (457)
                      ..-.-++    ..+++.+.++-.+++. +.+
T Consensus       102 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       102 VVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             cccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            6543222    2455555544345665 444

Part of a tellurite-reducing operon tehA and tehB

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.79  E-value=2.1e-08  Score=95.41  Aligned_cols=93  Identities=16%  Similarity=0.247  Sum_probs=71.8

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCC----cEEEEEccCCcCcccccCCccEE
Q 044572          299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDG----NISWHNADNSIEPLSWLVGSDVL  374 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~----nv~~~~~d~~~~~~~~~~~~D~v  374 (457)
                      |.+|||+|||.|.++.+||+.+  +.|+|||.++++|+.|++.+.... -...    +++|.+.|+++.    .+.||+|
T Consensus        90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP-~~~~~~~y~l~~~~~~~E~~----~~~fDaV  162 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDP-VLEGAIAYRLEYEDTDVEGL----TGKFDAV  162 (282)
T ss_pred             CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCc-hhccccceeeehhhcchhhc----cccccee
Confidence            6889999999999999999873  599999999999999999865432 1222    467777887664    3459998


Q ss_pred             EE--------CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          375 VV--------DPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       375 i~--------DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.        ||+      ++++.+.++..|++.++++
T Consensus       163 vcsevleHV~dp~------~~l~~l~~~lkP~G~lfit  194 (282)
T KOG1270|consen  163 VCSEVLEHVKDPQ------EFLNCLSALLKPNGRLFIT  194 (282)
T ss_pred             eeHHHHHHHhCHH------HHHHHHHHHhCCCCceEee
Confidence            75        564      5777777665677888887

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.79  E-value=8.7e-08  Score=91.73  Aligned_cols=126  Identities=14%  Similarity=0.057  Sum_probs=90.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCC
Q 044572          273 APSSFGQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVD  350 (457)
Q Consensus       273 ~~~~FfQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~  350 (457)
                      ++.+|+|.+..++...++.+...+.  ++.+|||+|||+|.++..+++. + .+|+++|.++.+++.|++|+...+    
T Consensus        21 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~iD~s~~~~~~a~~~~~~~~----   94 (233)
T PRK05134         21 DPNGEFKPLHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL-G-ADVTGIDASEENIEVARLHALESG----   94 (233)
T ss_pred             ccCCCcHHHHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-C-CeEEEEcCCHHHHHHHHHHHHHcC----
Confidence            5678888887777666666666542  5789999999999999999875 3 489999999999999999987531    


Q ss_pred             CcEEEEEccCCcCcccccCCccEEEECCCC--CCccHHHHHHHHhcCCCCcEEEEe
Q 044572          351 GNISWHNADNSIEPLSWLVGSDVLVVDPPR--KGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       351 ~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR--~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .+++++.+|+.+......+.||+|++.-.-  .+-...+++.+.+.-.+++.++++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~  150 (233)
T PRK05134         95 LKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFS  150 (233)
T ss_pred             CceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence            257888888776543333679999874321  111234666666654567777775

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=1.1e-07  Score=88.60  Aligned_cols=107  Identities=16%  Similarity=0.171  Sum_probs=79.9

Q ss_pred             HHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc
Q 044572          289 LRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS  366 (457)
Q Consensus       289 ~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~  366 (457)
                      ..++.+++  .++++|||+|||||..+-.+|+..+  +|+.||+.++..+.|++|++.++   ..||.++++|...-+..
T Consensus        61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg---~~nV~v~~gDG~~G~~~  135 (209)
T COG2518          61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLG---YENVTVRHGDGSKGWPE  135 (209)
T ss_pred             HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcC---CCceEEEECCcccCCCC
Confidence            33444433  4799999999999999999999865  99999999999999999999853   46799999999775443


Q ss_pred             ccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          367 WLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       367 ~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                       ...||.|++.=--.-+...+++   .+++.++++..-
T Consensus       136 -~aPyD~I~Vtaaa~~vP~~Ll~---QL~~gGrlv~Pv  169 (209)
T COG2518         136 -EAPYDRIIVTAAAPEVPEALLD---QLKPGGRLVIPV  169 (209)
T ss_pred             -CCCcCEEEEeeccCCCCHHHHH---hcccCCEEEEEE
Confidence             3579999985443333344444   345556666654

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.78  E-value=7.7e-09  Score=95.60  Aligned_cols=111  Identities=13%  Similarity=0.159  Sum_probs=83.3

Q ss_pred             EEECCCCCCCCCHH-HHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC
Q 044572          270 ISLAPSSFGQANTR-AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS  348 (457)
Q Consensus       270 ~~i~~~~FfQ~n~~-~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~  348 (457)
                      ..++-.++|.+.++ .++.+...+.... ..+.|+|.|||.|+-++..|..  +-.|++||+++.-+..|++|++.-  +
T Consensus        66 i~md~e~wfsvTpe~ia~~iA~~v~~~~-~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiY--G  140 (263)
T KOG2730|consen   66 IYMDREGWFSVTPEKIAEHIANRVVACM-NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVY--G  140 (263)
T ss_pred             eeecccceEEeccHHHHHHHHHHHHHhc-CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceee--c
Confidence            34444555555543 4555555554433 5678999999999999999976  349999999999999999999985  4


Q ss_pred             CCCcEEEEEccCCcCccccc---CCccEEEECCCCCCccH
Q 044572          349 VDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDS  385 (457)
Q Consensus       349 ~~~nv~~~~~d~~~~~~~~~---~~~D~vi~DPPR~Gl~~  385 (457)
                      ..++|+|++||+.+....+.   ..+|+|++-||..|-+.
T Consensus       141 I~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp~y  180 (263)
T KOG2730|consen  141 VPDRITFICGDFLDLASKLKADKIKYDCVFLSPPWGGPSY  180 (263)
T ss_pred             CCceeEEEechHHHHHHHHhhhhheeeeeecCCCCCCcch
Confidence            56799999999987654432   24789999999877544

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.78  E-value=6.7e-08  Score=98.55  Aligned_cols=104  Identities=13%  Similarity=0.025  Sum_probs=79.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~  376 (457)
                      .+..+||+|||+|.+++.+|.......++|||+++.+++.|.+++..+   +..|+.++++|+...+... .+.+|.|++
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~---gL~NV~~i~~DA~~ll~~~~~~s~D~I~l  198 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL---NLKNLLIINYDARLLLELLPSNSVEKIFV  198 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---CCCcEEEEECCHHHhhhhCCCCceeEEEE
Confidence            467999999999999999998765568999999999999999999873   4578999999997543222 257999988


Q ss_pred             CCCC--------CCccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPR--------KGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR--------~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.|-        .-....+++.+.+.-.+++.+++.
T Consensus       199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~  234 (390)
T PRK14121        199 HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR  234 (390)
T ss_pred             eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence            7652        112245666666655577777775

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.77  E-value=3.9e-08  Score=92.59  Aligned_cols=74  Identities=19%  Similarity=0.029  Sum_probs=57.7

Q ss_pred             HhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCcc
Q 044572          293 QKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSD  372 (457)
Q Consensus       293 ~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D  372 (457)
                      +..+.++.+|||+|||+|.++..++...+..+|+|||+|++|++.|+++..        ++.++++|+.+..  ..+.||
T Consensus        38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--------~~~~~~~d~~~~~--~~~sfD  107 (204)
T TIGR03587        38 LNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--------NINIIQGSLFDPF--KDNFFD  107 (204)
T ss_pred             HHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--------CCcEEEeeccCCC--CCCCEE
Confidence            334456789999999999999999876444689999999999999987642        3567888887621  235799


Q ss_pred             EEEE
Q 044572          373 VLVV  376 (457)
Q Consensus       373 ~vi~  376 (457)
                      +|++
T Consensus       108 ~V~~  111 (204)
T TIGR03587       108 LVLT  111 (204)
T ss_pred             EEEE
Confidence            9886

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.77  E-value=9e-08  Score=100.51  Aligned_cols=105  Identities=17%  Similarity=0.165  Sum_probs=80.9

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .+|++|||+|||.|+=+.++|...+ -..|+++|+++.-++.+++|+++.   +..|+.+...|+..........||.|+
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~---G~~nv~v~~~D~~~~~~~~~~~fD~IL  188 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC---GVSNVALTHFDGRVFGAALPETFDAIL  188 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCeEEEEeCchhhhhhhchhhcCeEE
Confidence            4789999999999999999997642 358999999999999999999984   357889999998764333335699999


Q ss_pred             ECCCCCCcc-----H-------------------HHH-HHHHhcCCCCcEEEEe
Q 044572          376 VDPPRKGLD-----S-------------------SLV-HALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~Gl~-----~-------------------~v~-~~l~~~~~~~~ivyvs  404 (457)
                      +|+|-+|..     +                   +++ .+...+++.+.+||++
T Consensus       189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST  242 (470)
T PRK11933        189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST  242 (470)
T ss_pred             EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence            999966542     1                   122 2333456788999997

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.76  E-value=1.5e-07  Score=91.30  Aligned_cols=96  Identities=13%  Similarity=0.018  Sum_probs=69.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      .+.+|||+|||+|.++..++..  ..+|+++|+|+++++.|+++..        ...++++|+..... ..+.||+|+.+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~--------~~~~~~~d~~~~~~-~~~~fD~V~s~  110 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA--------ADHYLAGDIESLPL-ATATFDLAWSN  110 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC--------CCCEEEcCcccCcC-CCCcEEEEEEC
Confidence            4678999999999999999874  3599999999999999987642        23688999876432 13579999987


Q ss_pred             CCCC--CccHHHHHHHHhcCCCCcEEEEe
Q 044572          378 PPRK--GLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PPR~--Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ..-.  .-...++..+.+...+++.++++
T Consensus       111 ~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~  139 (251)
T PRK10258        111 LAVQWCGNLSTALRELYRVVRPGGVVAFT  139 (251)
T ss_pred             chhhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence            6521  11224566665554577777776

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.76  E-value=3.9e-08  Score=92.73  Aligned_cols=111  Identities=17%  Similarity=0.146  Sum_probs=77.9

Q ss_pred             HHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572          287 ILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE  363 (457)
Q Consensus       287 ~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~  363 (457)
                      .++..+.+++  .+|++|||+|||+|.++-.+|...+. .+|++||++++.++.|++|++.+   +..|+.++++|...-
T Consensus        59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~---~~~nv~~~~gdg~~g  135 (209)
T PF01135_consen   59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL---GIDNVEVVVGDGSEG  135 (209)
T ss_dssp             HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH---TTHSEEEEES-GGGT
T ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh---ccCceeEEEcchhhc
Confidence            3344444444  58999999999999999999987542 47999999999999999999874   346999999998765


Q ss_pred             cccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          364 PLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       364 ~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.. ...||.|++......+...+++   .++..+++|..-
T Consensus       136 ~~~-~apfD~I~v~~a~~~ip~~l~~---qL~~gGrLV~pi  172 (209)
T PF01135_consen  136 WPE-EAPFDRIIVTAAVPEIPEALLE---QLKPGGRLVAPI  172 (209)
T ss_dssp             TGG-G-SEEEEEESSBBSS--HHHHH---TEEEEEEEEEEE
T ss_pred             ccc-CCCcCEEEEeeccchHHHHHHH---hcCCCcEEEEEE
Confidence            433 3579999998766555544444   455456666643

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR00740 methyltransferase, putative

Probab=98.76  E-value=2.3e-07  Score=89.35  Aligned_cols=104  Identities=10%  Similarity=0.003  Sum_probs=73.7

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccE
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDV  373 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~  373 (457)
                      +.++.+|||+|||+|.++..+++..  ...+|+|||+|++|++.|+++++..  ....+++++++|+.+...   ..+|+
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~--~~~~~v~~~~~d~~~~~~---~~~d~  125 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY--HSEIPVEILCNDIRHVEI---KNASM  125 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEECChhhCCC---CCCCE
Confidence            3467899999999999999998742  2358999999999999999998763  223579999999976532   35787


Q ss_pred             EEECCCCCCcc----HHHHHHHHhcCCCCcEEEEe
Q 044572          374 LVVDPPRKGLD----SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       374 vi~DPPR~Gl~----~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |++.=.-.-++    ..+++.+.+.-.+++.++++
T Consensus       126 v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~  160 (239)
T TIGR00740       126 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS  160 (239)
T ss_pred             EeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            76532211111    23555555544577777775

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK03612 spermidine synthase; Provisional

Probab=98.74  E-value=1e-07  Score=102.03  Aligned_cols=109  Identities=16%  Similarity=0.045  Sum_probs=80.6

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh--CCC--CCCCcEEEEEccCCcCcccccCCcc
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR--LPK--SVDGNISWHNADNSIEPLSWLVGSD  372 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~--~~~--~~~~nv~~~~~d~~~~~~~~~~~~D  372 (457)
                      ++.++|||+|||+|.++..+++.....+|++||+|+++++.|++|...  .+.  ...++++++.+|+.+++....++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            457899999999999999988753347999999999999999996321  100  1235899999999886654456899


Q ss_pred             EEEECCCCCC-------ccHHHHHHHHhcCCCCcEEEEec
Q 044572          373 VLVVDPPRKG-------LDSSLVHALQSIGSAERKAKSLS  405 (457)
Q Consensus       373 ~vi~DPPR~G-------l~~~v~~~l~~~~~~~~ivyvs~  405 (457)
                      +|++|+|...       ...++.+.+.+.-++++++.+.+
T Consensus       376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            9999998532       12356666666555788877753

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.73  E-value=1.3e-07  Score=76.46  Aligned_cols=100  Identities=20%  Similarity=0.175  Sum_probs=74.4

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCC
Q 044572          301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPR  380 (457)
Q Consensus       301 ~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR  380 (457)
                      +++|+|||+|.++..++. ....+++++|.++.+++.++++.+.   +...+++++.+|..+........+|+|+++++.
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~   76 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAA---LLADNVEVLKGDAEELPPEADESFDVIISDPPL   76 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhc---ccccceEEEEcChhhhccccCCceEEEEEccce
Confidence            489999999999999987 3467999999999999999865443   234678999999887643223679999999996


Q ss_pred             CC---ccHHHHHHHHhcCCCCcEEEEe
Q 044572          381 KG---LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       381 ~G---l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ..   ....+++.+.....+++.++++
T Consensus        77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          77 HHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            43   3345556655544467777663

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.73  E-value=1.2e-07  Score=92.29  Aligned_cols=97  Identities=13%  Similarity=0.043  Sum_probs=72.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.++..++...+..+|+|||+|+.+++.|+++.        .++.|+.+|+.....  ...||+|+.+
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--------~~~~~~~~d~~~~~~--~~~fD~v~~~  100 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--------PDCQFVEADIASWQP--PQALDLIFAN  100 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--------CCCeEEECchhccCC--CCCccEEEEc
Confidence            678999999999999999998655569999999999999998763        256899999876532  2579999988


Q ss_pred             CCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          378 PPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ..-.-+  ...+++.+.+.-.+++.+.++
T Consensus       101 ~~l~~~~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683        101 ASLQWLPDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             cChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            763211  234566565544467776665

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.72  E-value=1.2e-07  Score=89.99  Aligned_cols=101  Identities=13%  Similarity=0.010  Sum_probs=72.2

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECC
Q 044572          299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDP  378 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DP  378 (457)
                      +.+|||+|||+|.++..+++. + .+|+++|.++.+++.+++|+...   ...++++..+|+.+........||+|+++-
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~-~-~~v~~iD~s~~~~~~a~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~  120 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARL-G-ANVTGIDASEENIEVAKLHAKKD---PLLKIEYRCTSVEDLAEKGAKSFDVVTCME  120 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHHc---CCCceEEEeCCHHHhhcCCCCCccEEEehh
Confidence            779999999999999999874 3 37999999999999999998763   223689999998765433235799998743


Q ss_pred             C--CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          379 P--RKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       379 P--R~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      -  ...-...+++.+...-.+++.++++
T Consensus       121 ~l~~~~~~~~~l~~~~~~L~~gG~l~i~  148 (224)
T TIGR01983       121 VLEHVPDPQAFIRACAQLLKPGGILFFS  148 (224)
T ss_pred             HHHhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            2  1111224555555544466666665

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.71  E-value=1.8e-07  Score=91.84  Aligned_cols=104  Identities=13%  Similarity=0.069  Sum_probs=73.9

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEE
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVL  374 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~v  374 (457)
                      +.++++|||+|||+|..++.+++..+. .+|+|||+++.+++.|++|++.+   +.++++|+.+|+++.... .+.||+|
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~---g~~~v~~~~~d~~~l~~~-~~~fD~V  150 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA---GYTNVEFRLGEIEALPVA-DNSVDVI  150 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc---CCCCEEEEEcchhhCCCC-CCceeEE
Confidence            357899999999999998887765443 47999999999999999998763   346899999998764321 2479999


Q ss_pred             EECCCC---CCccHHHHHHHHhcCCCCcEEEEe
Q 044572          375 VVDPPR---KGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       375 i~DPPR---~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.+---   .+. ..+++.+.+.-.+++.++++
T Consensus       151 i~~~v~~~~~d~-~~~l~~~~r~LkpGG~l~i~  182 (272)
T PRK11873        151 ISNCVINLSPDK-ERVFKEAFRVLKPGGRFAIS  182 (272)
T ss_pred             EEcCcccCCCCH-HHHHHHHHHHcCCCcEEEEE
Confidence            876321   011 23455554443466666654

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.71  E-value=1.8e-07  Score=103.62  Aligned_cols=83  Identities=16%  Similarity=0.159  Sum_probs=66.2

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC------------------------------------------CCEEEEEeCCHHH
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK------------------------------------------CRSVKCVEINKES  334 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~------------------------------------------~~~V~gVE~~~~a  334 (457)
                      .++..++|.+||+|+|.+.+|....                                          ..+++|+|+++.|
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            3578999999999999999986310                                          1269999999999


Q ss_pred             HHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEEECCCCC
Q 044572          335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVVDPPRK  381 (457)
Q Consensus       335 v~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~DPPR~  381 (457)
                      ++.|++|++.+  +..+.++|.++|+.+..... .+.+|+||.|||+.
T Consensus       269 v~~A~~N~~~~--g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg  314 (702)
T PRK11783        269 IQAARKNARRA--GVAELITFEVKDVADLKNPLPKGPTGLVISNPPYG  314 (702)
T ss_pred             HHHHHHHHHHc--CCCcceEEEeCChhhcccccccCCCCEEEECCCCc
Confidence            99999999985  34457999999998754322 24699999999963

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.70  E-value=1.1e-07  Score=92.46  Aligned_cols=95  Identities=14%  Similarity=0.039  Sum_probs=68.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.++..++......+|+|+|+|+.+++.|+++          +++++++|+.+...  .+.||+|+.+
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~~--~~~fD~v~~~   96 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----------GVDARTGDVRDWKP--KPDTDVVVSN   96 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----------CCcEEEcChhhCCC--CCCceEEEEe
Confidence            67899999999999999999864345899999999999988642          36789999876532  3579999996


Q ss_pred             CCCCC--ccHHHHHHHHhcCCCCcEEEEe
Q 044572          378 PPRKG--LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PPR~G--l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ..-.=  -...+++.+.+.-.+++.+.+.
T Consensus        97 ~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         97 AALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             hhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence            65211  1134555554433466666664

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=3.9e-07  Score=86.79  Aligned_cols=100  Identities=15%  Similarity=0.140  Sum_probs=78.0

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .+|.+|||.|.|||+++..||...+ ..+|+.+|+.++.++.|++|++..  +..+++++..+|+.+....  +.+|+||
T Consensus        93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~--~l~d~v~~~~~Dv~~~~~~--~~vDav~  168 (256)
T COG2519          93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GLGDRVTLKLGDVREGIDE--EDVDAVF  168 (256)
T ss_pred             CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh--ccccceEEEeccccccccc--cccCEEE
Confidence            4899999999999999999997544 379999999999999999999985  3445699999999876543  4899999


Q ss_pred             ECCCCCCccHHHHHHHHhc-CCCCcEEEE
Q 044572          376 VDPPRKGLDSSLVHALQSI-GSAERKAKS  403 (457)
Q Consensus       376 ~DPPR~Gl~~~v~~~l~~~-~~~~~ivyv  403 (457)
                      +|=|..   -++++.+.+. ++.+.++..
T Consensus       169 LDmp~P---W~~le~~~~~Lkpgg~~~~y  194 (256)
T COG2519         169 LDLPDP---WNVLEHVSDALKPGGVVVVY  194 (256)
T ss_pred             EcCCCh---HHHHHHHHHHhCCCcEEEEE
Confidence            999852   3566666554 334444443

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.70  E-value=3.7e-08  Score=98.00  Aligned_cols=99  Identities=18%  Similarity=0.183  Sum_probs=73.2

Q ss_pred             CCCCCCCC---HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCC
Q 044572          274 PSSFGQAN---TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVD  350 (457)
Q Consensus       274 ~~~FfQ~n---~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~  350 (457)
                      ..-||+.-   +..+..|++...  +.+|+.|||-|||||+|-+.+... | .+|+|.|++..|++-|+.|++..   ..
T Consensus       172 kRPf~~p~s~~P~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~-G-~~viG~Did~~mv~gak~Nl~~y---~i  244 (347)
T COG1041         172 KRPFFRPGSMDPRLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLM-G-ARVIGSDIDERMVRGAKINLEYY---GI  244 (347)
T ss_pred             cCCccCcCCcCHHHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhc-C-ceEeecchHHHHHhhhhhhhhhh---Cc
Confidence            34666652   344444444322  357999999999999999999875 3 49999999999999999999874   24


Q ss_pred             CcEEEEEc-cCCcCcccccCCccEEEECCCC
Q 044572          351 GNISWHNA-DNSIEPLSWLVGSDVLVVDPPR  380 (457)
Q Consensus       351 ~nv~~~~~-d~~~~~~~~~~~~D~vi~DPPR  380 (457)
                      ....++.+ ||...... .+.+|.|+.|||+
T Consensus       245 ~~~~~~~~~Da~~lpl~-~~~vdaIatDPPY  274 (347)
T COG1041         245 EDYPVLKVLDATNLPLR-DNSVDAIATDPPY  274 (347)
T ss_pred             CceeEEEecccccCCCC-CCccceEEecCCC
Confidence            55666666 88776522 1359999999996

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.69  E-value=1.9e-07  Score=90.87  Aligned_cols=102  Identities=18%  Similarity=0.153  Sum_probs=74.8

Q ss_pred             CCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044572          278 GQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN  357 (457)
Q Consensus       278 fQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~  357 (457)
                      |-.|....+.+++.+.  ..++++|||+|||+|.++..++.+.  .+|+++|+++.+++.++++...     ..++++++
T Consensus        11 fl~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~   81 (253)
T TIGR00755        11 FLIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL-----YERLEVIE   81 (253)
T ss_pred             cCCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc-----CCcEEEEE
Confidence            3455555555544331  1367899999999999999999864  4799999999999999987643     35789999


Q ss_pred             ccCCcCcccccCCcc---EEEECCCCCCccHHHHHHHH
Q 044572          358 ADNSIEPLSWLVGSD---VLVVDPPRKGLDSSLVHALQ  392 (457)
Q Consensus       358 ~d~~~~~~~~~~~~D---~vi~DPPR~Gl~~~v~~~l~  392 (457)
                      +|+.+....   .+|   +|+.|+|+.-. ..++..+.
T Consensus        82 ~D~~~~~~~---~~d~~~~vvsNlPy~i~-~~il~~ll  115 (253)
T TIGR00755        82 GDALKVDLP---DFPKQLKVVSNLPYNIS-SPLIFKLL  115 (253)
T ss_pred             CchhcCChh---HcCCcceEEEcCChhhH-HHHHHHHh
Confidence            999775422   355   99999997644 34555554

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR00417 speE spermidine synthase

Probab=98.69  E-value=3.2e-07  Score=90.09  Aligned_cols=107  Identities=14%  Similarity=0.057  Sum_probs=77.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC-CCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK-SVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~-~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      ..++|||+|||+|.++..+++.....+|++||+++++++.|+++...... ....+++++.+|+.+++....+.||+||+
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            45699999999999998888754467899999999999999998754211 12357889999987765544468999999


Q ss_pred             CCCCC-Cc-----cHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRK-GL-----DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~-Gl-----~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |++.. +.     ..+..+.+.+.-.+++++.+.
T Consensus       152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            99732 11     235556665544466666664

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK01581 speE spermidine synthase; Validated

Probab=98.67  E-value=3.5e-07  Score=92.18  Aligned_cols=109  Identities=16%  Similarity=0.031  Sum_probs=78.8

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHH--h-hCC-CCCCCcEEEEEccCCcCcccccCCc
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV--S-RLP-KSVDGNISWHNADNSIEPLSWLVGS  371 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na--~-~~~-~~~~~nv~~~~~d~~~~~~~~~~~~  371 (457)
                      .....+||++|||+|.....+.+.....+|++||+++++++.|++.-  . .+. .....+++++.+|+.+++....+.|
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y  227 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY  227 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence            34567999999999998888887554679999999999999999621  1 100 0124689999999988765545679


Q ss_pred             cEEEECCCCC-C------ccHHHHHHHHhcCCCCcEEEEe
Q 044572          372 DVLVVDPPRK-G------LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       372 D~vi~DPPR~-G------l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+||+|.|-. +      ...++.+.+.+.-.+++++.+-
T Consensus       228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            9999998632 1      1235666666655577776664

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.66  E-value=1.7e-07  Score=99.45  Aligned_cols=113  Identities=13%  Similarity=0.036  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572          284 AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE  363 (457)
Q Consensus       284 ~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~  363 (457)
                      .++.+++.+.  +.++.+|||+|||+|.+++.+|...+ .+|+|+|+|+++++.|++|+..    ...+++|+.+|+...
T Consensus       254 ~te~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvDiS~~~l~~A~~~~~~----~~~~v~~~~~d~~~~  326 (475)
T PLN02336        254 TTKEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENFD-VHVVGIDLSVNMISFALERAIG----RKCSVEFEVADCTKK  326 (475)
T ss_pred             HHHHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhhc----CCCceEEEEcCcccC
Confidence            4455555432  34678999999999999999997654 4899999999999999998753    235799999998764


Q ss_pred             cccccCCccEEEECCCC--CCccHHHHHHHHhcCCCCcEEEEe
Q 044572          364 PLSWLVGSDVLVVDPPR--KGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       364 ~~~~~~~~D~vi~DPPR--~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ... .+.||+|+..---  ..-...+++.+.+.-.+++.++++
T Consensus       327 ~~~-~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~  368 (475)
T PLN02336        327 TYP-DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLIS  368 (475)
T ss_pred             CCC-CCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEE
Confidence            321 2469999873210  000124556665554567777765

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.66  E-value=1.2e-07  Score=88.70  Aligned_cols=159  Identities=16%  Similarity=0.121  Sum_probs=100.9

Q ss_pred             EEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhh-CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572          262 WENVGGIDISLAPSSFGQANTRAFDILLRKLQKY-VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK  340 (457)
Q Consensus       262 ~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~-~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~  340 (457)
                      +.+++|++++=....    |+.. .. ..++... .+.|++|||.|.|-|.+++.+++ +|+.+|+.||.|+.-++.|+-
T Consensus       103 TiEIdGIrMhrt~~t----dP~~-Dt-~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~-rGA~~VitvEkdp~VLeLa~l  175 (287)
T COG2521         103 TIEIDGIRMHRTKGT----DPLE-DT-LAKVELVKVKRGERVLDTCTGLGYTAIEALE-RGAIHVITVEKDPNVLELAKL  175 (287)
T ss_pred             eEEEccEEEecccCc----CcHH-HH-HhhhheeccccCCEeeeeccCccHHHHHHHH-cCCcEEEEEeeCCCeEEeecc
Confidence            446889888754322    2211 11 1222211 23699999999999999999997 578899999999999999987


Q ss_pred             HHhhCCCCCCCcEEEEEccCCcCccccc-CCccEEEECCCCCCccHH-----HHHHH-HhcCCCCcEEEEeccCC-CCCc
Q 044572          341 TVSRLPKSVDGNISWHNADNSIEPLSWL-VGSDVLVVDPPRKGLDSS-----LVHAL-QSIGSAERKAKSLSESS-SSMV  412 (457)
Q Consensus       341 Na~~~~~~~~~nv~~~~~d~~~~~~~~~-~~~D~vi~DPPR~Gl~~~-----v~~~l-~~~~~~~~ivyvs~~~~-~c~~  412 (457)
                      |==.-+. ...+++.+.||+.+....+. ..||+||-||||..+..+     +.+.+ +-+++.++++.-.++.. .--.
T Consensus       176 NPwSr~l-~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG  254 (287)
T COG2521         176 NPWSREL-FEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRG  254 (287)
T ss_pred             CCCCccc-cccccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccccc
Confidence            7211001 12368999999998776654 469999999999765443     33334 33555666654433322 1222


Q ss_pred             hhchhhHHHHHHHhcc
Q 044572          413 KEEKRPWILRAKEASV  428 (457)
Q Consensus       413 ~~~~~~~~~~~~~~~~  428 (457)
                      ....+-..+.++.++-
T Consensus       255 ~d~~~gVa~RLr~vGF  270 (287)
T COG2521         255 LDLPKGVAERLRRVGF  270 (287)
T ss_pred             CChhHHHHHHHHhcCc
Confidence            3344555555555543

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.66  E-value=2.9e-07  Score=92.70  Aligned_cols=101  Identities=16%  Similarity=0.063  Sum_probs=68.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      .+.+|||+|||+|.+++.++.. ++.+|+|||.|+.++..++...+..  +...+++|+.+|+.+...  .+.||+|+.-
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~-g~~~V~GiD~S~~~l~q~~a~~~~~--~~~~~i~~~~~d~e~lp~--~~~FD~V~s~  196 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGA-GAKLVVGIDPSQLFLCQFEAVRKLL--GNDQRAHLLPLGIEQLPA--LKAFDTVFSM  196 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHhc--CCCCCeEEEeCCHHHCCC--cCCcCEEEEC
Confidence            5789999999999999999975 5678999999999987665543332  113579999999877543  4679999862


Q ss_pred             CC---CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          378 PP---RKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PP---R~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ==   +.. ...+++.+.+.-.+++.++++
T Consensus       197 ~vl~H~~d-p~~~L~~l~~~LkpGG~lvl~  225 (322)
T PRK15068        197 GVLYHRRS-PLDHLKQLKDQLVPGGELVLE  225 (322)
T ss_pred             ChhhccCC-HHHHHHHHHHhcCCCcEEEEE
Confidence            10   000 124555555543455555544

>PLN02366 spermidine synthase

Probab=98.64  E-value=6.5e-07  Score=89.35  Aligned_cols=129  Identities=16%  Similarity=0.106  Sum_probs=88.3

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC-CCCcEEEEEccCCcCcccc-cCCccEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS-VDGNISWHNADNSIEPLSW-LVGSDVL  374 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~-~~~nv~~~~~d~~~~~~~~-~~~~D~v  374 (457)
                      +..++||++|||.|.+...+++.....+|+.||++++.++.|++........ ...+++++.+|+..++... .+.||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            4578999999999999999998655679999999999999999986542111 2458999999998766543 3579999


Q ss_pred             EECCCCC-C-----ccHHHHHHHHhcCCCCcEEEEeccCCCCCc-hhchhhHHHHHHHhc
Q 044572          375 VVDPPRK-G-----LDSSLVHALQSIGSAERKAKSLSESSSSMV-KEEKRPWILRAKEAS  427 (457)
Q Consensus       375 i~DPPR~-G-----l~~~v~~~l~~~~~~~~ivyvs~~~~~c~~-~~~~~~~~~~~~~~~  427 (457)
                      |+|-+.. |     ...++.+.+.+.-.+++++.+-+.+  .+. ....+.+...++..-
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s--~~~~~~~~~~i~~tl~~~F  227 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAES--MWLHMDLIEDLIAICRETF  227 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCC--cccchHHHHHHHHHHHHHC
Confidence            9996531 1     2345677766655577776553221  222 223444555555443

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.64  E-value=1e-07  Score=79.04  Aligned_cols=70  Identities=23%  Similarity=0.113  Sum_probs=54.6

Q ss_pred             EEEEcccccHHHHHHHhhC--C-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          302 VTDLYAGAGVIGLSLAAAR--K-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       302 vLDl~cG~G~~sl~lA~~~--~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      |||+|||+|..+..++...  + ..+++|||+|++|++.++++.+..  +  .+++|+++|+.++ ....+.||+|+.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~--~--~~~~~~~~D~~~l-~~~~~~~D~v~~   73 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED--G--PKVRFVQADARDL-PFSDGKFDLVVC   73 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT--T--TTSEEEESCTTCH-HHHSSSEEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc--C--CceEEEECCHhHC-cccCCCeeEEEE
Confidence            7999999999999999763  2 169999999999999999998762  2  2789999999774 333468999998

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.63  E-value=6.6e-07  Score=82.94  Aligned_cols=111  Identities=15%  Similarity=0.095  Sum_probs=72.3

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------cc-
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------SW-  367 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~~-  367 (457)
                      +.++++|||+|||+|.++..++... +..+|++||+++.+        ..      .+++++++|+.+...      .. 
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~------~~i~~~~~d~~~~~~~~~l~~~~~   95 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PI------ENVDFIRGDFTDEEVLNKIRERVG   95 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cC------CCceEEEeeCCChhHHHHHHHHhC
Confidence            3578999999999999999988754 34579999999864        11      357889999865310      11 


Q ss_pred             cCCccEEEECC--CCCCcc-----------HHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHH
Q 044572          368 LVGSDVLVVDP--PRKGLD-----------SSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKE  425 (457)
Q Consensus       368 ~~~~D~vi~DP--PR~Gl~-----------~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~  425 (457)
                      .+.||+|+.|+  +..|..           ..+++.+.++-.+++.+++.     +........++..++.
T Consensus        96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~-----~~~~~~~~~~l~~l~~  161 (188)
T TIGR00438        96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK-----VFQGEEIDEYLNELRK  161 (188)
T ss_pred             CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE-----EccCccHHHHHHHHHh
Confidence            24699999995  333431           23455555444466677765     4444444556655444

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.61  E-value=7.9e-07  Score=84.04  Aligned_cols=115  Identities=13%  Similarity=0.009  Sum_probs=76.9

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--c-----cc
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--L-----SW  367 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~-----~~  367 (457)
                      +.++.+|||+|||+|.++..+++..+. .+|+|||+++.         .     ...+++++++|+.+..  .     ..
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~-----~~~~v~~i~~D~~~~~~~~~i~~~~~  114 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------D-----PIVGVDFLQGDFRDELVLKALLERVG  114 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------c-----CCCCcEEEecCCCChHHHHHHHHHhC
Confidence            457889999999999999999986532 58999999981         1     1246899999998742  1     11


Q ss_pred             cCCccEEEECC-C-CCCcc-----------HHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccc
Q 044572          368 LVGSDVLVVDP-P-RKGLD-----------SSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ  429 (457)
Q Consensus       368 ~~~~D~vi~DP-P-R~Gl~-----------~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~  429 (457)
                      ...+|+|+.|+ | ..|..           ..+++.+...-.+++.+++.     +.......+++..++..-..
T Consensus       115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~-----~~~~~~~~~~l~~l~~~f~~  184 (209)
T PRK11188        115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK-----VFQGEGFDEYLREIRSLFTK  184 (209)
T ss_pred             CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE-----EecCcCHHHHHHHHHhCceE
Confidence            35799999986 4 33321           22444444444477777775     55556666776665544333

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.61  E-value=6.4e-07  Score=87.67  Aligned_cols=101  Identities=13%  Similarity=-0.013  Sum_probs=71.3

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|..+..++...+ .+|+|+|+++.+++.|++++..     ..++.|+++|+.+.... .+.||+|+.
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~~~-~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~~~~-~~~FD~V~s  123 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEKYG-AHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDILKKDFP-ENTFDMIYS  123 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhhcC-CEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCcccCCCC-CCCeEEEEE
Confidence            4788999999999999999986543 4899999999999999987643     25789999998754221 257999987


Q ss_pred             CCCCCCc----cHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKGL----DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~Gl----~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ..--.-+    ...+++.+.++-.+++.++++
T Consensus       124 ~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~  155 (263)
T PTZ00098        124 RDAILHLSYADKKKLFEKCYKWLKPNGILLIT  155 (263)
T ss_pred             hhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            3211001    123555555544466666664

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.60  E-value=1.3e-07  Score=86.92  Aligned_cols=77  Identities=17%  Similarity=0.175  Sum_probs=61.4

Q ss_pred             HHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-
Q 044572          290 RKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-  368 (457)
Q Consensus       290 ~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-  368 (457)
                      +.|.+++++|.+|||||||.|.+--.|.... .-+++|||++++.+..+.++          -+..+++|+.+.+..+. 
T Consensus         5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f~d   73 (193)
T PF07021_consen    5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADFPD   73 (193)
T ss_pred             HHHHHHcCCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhCCC
Confidence            5677788899999999999999988888754 45899999999998766542          24679999988665443 


Q ss_pred             CCccEEEEC
Q 044572          369 VGSDVLVVD  377 (457)
Q Consensus       369 ~~~D~vi~D  377 (457)
                      +.||.||+.
T Consensus        74 ~sFD~VIls   82 (193)
T PF07021_consen   74 QSFDYVILS   82 (193)
T ss_pred             CCccEEehH
Confidence            679999984

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.59  E-value=5.9e-07  Score=90.65  Aligned_cols=99  Identities=12%  Similarity=0.040  Sum_probs=69.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.+++.+++..+..+|+++|.++++++.|+++...      .+++++.+|+++.... .+.||+|++.
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~------~~i~~i~gD~e~lp~~-~~sFDvVIs~  185 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIIEGDAEDLPFP-TDYADRYVSA  185 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc------cCCeEEeccHHhCCCC-CCceeEEEEc
Confidence            57899999999999999998765456899999999999999988643      3678999998764321 3579999885


Q ss_pred             CCCC--CccHHHHHHHHhcCCCCcEEEE
Q 044572          378 PPRK--GLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       378 PPR~--Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      ..-.  .-...+++.+.+.-.+++.+.+
T Consensus       186 ~~L~~~~d~~~~L~e~~rvLkPGG~LvI  213 (340)
T PLN02490        186 GSIEYWPDPQRGIKEAYRVLKIGGKACL  213 (340)
T ss_pred             ChhhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence            4311  1112345555543335555444

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.56  E-value=9.2e-07  Score=83.89  Aligned_cols=100  Identities=18%  Similarity=0.250  Sum_probs=74.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCC------CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCc
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKC------RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS  371 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~------~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~  371 (457)
                      ++.++||++||||-+++.+.+..+.      ++|+..|+|+++++.+++.++..+......+.|+++|++++... ...|
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFd-d~s~  178 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFD-DDSF  178 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCC-CCcc
Confidence            5789999999999999999988776      78999999999999999988664332233599999999987633 3568


Q ss_pred             cEEEE--------CCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          372 DVLVV--------DPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       372 D~vi~--------DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      |+..+        ||++     .+.++-+-+++.+++..+
T Consensus       179 D~yTiafGIRN~th~~k-----~l~EAYRVLKpGGrf~cL  213 (296)
T KOG1540|consen  179 DAYTIAFGIRNVTHIQK-----ALREAYRVLKPGGRFSCL  213 (296)
T ss_pred             eeEEEecceecCCCHHH-----HHHHHHHhcCCCcEEEEE
Confidence            87654        4442     355566667644544444

>PLN03075 nicotianamine synthase; Provisional

Probab=98.56  E-value=1.3e-06  Score=86.18  Aligned_cols=104  Identities=14%  Similarity=0.036  Sum_probs=74.6

Q ss_pred             CCCeEEEEcccccHH-HHHHHh-hCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          298 YGASVTDLYAGAGVI-GLSLAA-ARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~-sl~lA~-~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      ..++|+|+|||.|.+ ++.++. .....+++++|+++++++.|+++++.. .+..++++|+.+|+.+... ....||+|+
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-~gL~~rV~F~~~Da~~~~~-~l~~FDlVF  200 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-PDLSKRMFFHTADVMDVTE-SLKEYDVVF  200 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-cCccCCcEEEECchhhccc-ccCCcCEEE
Confidence            578999999997744 444442 334468999999999999999998541 1344679999999987532 246899999


Q ss_pred             ECCCCC----CccHHHHHHHHhcCCCCcEEEEe
Q 044572          376 VDPPRK----GLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~----Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++ ---    .-..++++.+.+.-.+++++.+-
T Consensus       201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr  232 (296)
T PLN03075        201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR  232 (296)
T ss_pred             Ee-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence            98 311    22346777777755577777775

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.55  E-value=1.6e-06  Score=82.54  Aligned_cols=114  Identities=18%  Similarity=0.077  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHhhC-CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572          283 RAFDILLRKLQKYV-PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS  361 (457)
Q Consensus       283 ~~~~~l~~~i~~~~-~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~  361 (457)
                      .....+++.+.... ....+|||+|||+|.++..++......+|+++|+++.+++.++++..       .+++++.+|+.
T Consensus        18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~   90 (240)
T TIGR02072        18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAE   90 (240)
T ss_pred             HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchh
Confidence            34444555444321 23568999999999999999986544679999999999998887542       36789999987


Q ss_pred             cCcccccCCccEEEECCCCC--CccHHHHHHHHhcCCCCcEEEEe
Q 044572          362 IEPLSWLVGSDVLVVDPPRK--GLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       362 ~~~~~~~~~~D~vi~DPPR~--Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +... ..+.||+|+.+=.-.  .-...+++.+...-.+++.++++
T Consensus        91 ~~~~-~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~  134 (240)
T TIGR02072        91 KLPL-EDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFS  134 (240)
T ss_pred             hCCC-CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence            6542 235799999853210  01124666666654567777765

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.55  E-value=5e-07  Score=88.75  Aligned_cols=113  Identities=13%  Similarity=0.078  Sum_probs=75.2

Q ss_pred             HHHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572          285 FDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI  362 (457)
Q Consensus       285 ~~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~  362 (457)
                      ....++.+.+.+  ++|++|||+|||.|.+++.+|++.|+ +|+||.+|++.++.|++.++..  +..+++++...|..+
T Consensus        47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~--gl~~~v~v~~~D~~~  123 (273)
T PF02353_consen   47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREA--GLEDRVEVRLQDYRD  123 (273)
T ss_dssp             HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS--TSSSTEEEEES-GGG
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhc--CCCCceEEEEeeccc
Confidence            345566666654  48999999999999999999987554 8999999999999999999874  345689999998755


Q ss_pred             CcccccCCccEEEEC-CC-CCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          363 EPLSWLVGSDVLVVD-PP-RKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       363 ~~~~~~~~~D~vi~D-PP-R~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .    ...||.||.= -= -.|-  -+...+.+..+-.+++.+++-
T Consensus       124 ~----~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq  165 (273)
T PF02353_consen  124 L----PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ  165 (273)
T ss_dssp             -------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred             c----CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            3    2479977641 10 0111  134666676665688888764

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PTZ00146 fibrillarin; Provisional

Probab=98.55  E-value=2.3e-06  Score=84.15  Aligned_cols=103  Identities=16%  Similarity=0.038  Sum_probs=69.5

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccccCCcc
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSD  372 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D  372 (457)
                      +.++.+|||||||+|+++.++|...+ ...|++||+++.+.++...-++.     ..||.++.+|+....  ......+|
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~Da~~p~~y~~~~~~vD  204 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIEDARYPQKYRMLVPMVD  204 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEECCccChhhhhcccCCCC
Confidence            35789999999999999999998753 35899999999887666655443     157899999986421  11235699


Q ss_pred             EEEECCCCCCccHHHHHHHH-hcCCCCcEEEEe
Q 044572          373 VLVVDPPRKGLDSSLVHALQ-SIGSAERKAKSL  404 (457)
Q Consensus       373 ~vi~DPPR~Gl~~~v~~~l~-~~~~~~~ivyvs  404 (457)
                      +|++|-.-..-...++..+. -++ ++..+.++
T Consensus       205 vV~~Dva~pdq~~il~~na~r~LK-pGG~~vI~  236 (293)
T PTZ00146        205 VIFADVAQPDQARIVALNAQYFLK-NGGHFIIS  236 (293)
T ss_pred             EEEEeCCCcchHHHHHHHHHHhcc-CCCEEEEE
Confidence            99999852211112332333 455 55555553

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.54  E-value=7.7e-07  Score=84.60  Aligned_cols=101  Identities=15%  Similarity=0.074  Sum_probs=72.0

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCC
Q 044572          300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPP  379 (457)
Q Consensus       300 ~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPP  379 (457)
                      ++|||+|||+|.++..++...+..+|+|+|+|+++++.|+++++..  +...+++++.+|+....  ..+.||+|+..=-
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~--gl~~~i~~~~~d~~~~~--~~~~fD~I~~~~~   76 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL--GLQGRIRIFYRDSAKDP--FPDTYDLVFGFEV   76 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc--CCCcceEEEecccccCC--CCCCCCEeehHHH
Confidence            4799999999999999997654458999999999999999998763  34468999999986542  2357999875210


Q ss_pred             --CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          380 --RKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       380 --R~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                        ..+-...+++.+.+.-.+++.++++
T Consensus        77 l~~~~~~~~~l~~~~~~LkpgG~l~i~  103 (224)
T smart00828       77 IHHIKDKMDLFSNISRHLKDGGHLVLA  103 (224)
T ss_pred             HHhCCCHHHHHHHHHHHcCCCCEEEEE
Confidence              0000134666666654566666664

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.53  E-value=4.4e-07  Score=83.59  Aligned_cols=69  Identities=17%  Similarity=0.186  Sum_probs=52.9

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      -.++||+|||.|.|+..||.+  |.+++++|+++.|++.|++....     ..+|+|+++|+.+...  .+.||+||+
T Consensus        44 y~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~-----~~~V~~~~~dvp~~~P--~~~FDLIV~  112 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAG-----LPHVEWIQADVPEFWP--EGRFDLIVL  112 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT-----SS-EEEEEE
T ss_pred             cceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCC-----CCCeEEEECcCCCCCC--CCCeeEEEE
Confidence            468999999999999999986  77999999999999999987653     3689999999977643  368999887

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.53  E-value=9.7e-07  Score=85.13  Aligned_cols=82  Identities=23%  Similarity=0.270  Sum_probs=63.3

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--cccCCccE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSDV  373 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~~~~~D~  373 (457)
                      .+|.+|||.|.|+|.+++.||+..+ .++|+..|..++.++.|++|++..  +..+|+++.+.|+.+...  .....+|.
T Consensus        39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~--gl~~~v~~~~~Dv~~~g~~~~~~~~~Da  116 (247)
T PF08704_consen   39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH--GLDDNVTVHHRDVCEEGFDEELESDFDA  116 (247)
T ss_dssp             -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT--TCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc--CCCCCceeEecceecccccccccCcccE
Confidence            4899999999999999999997543 469999999999999999999985  345799999999964222  22357999


Q ss_pred             EEECCCC
Q 044572          374 LVVDPPR  380 (457)
Q Consensus       374 vi~DPPR  380 (457)
                      ||+|=|-
T Consensus       117 vfLDlp~  123 (247)
T PF08704_consen  117 VFLDLPD  123 (247)
T ss_dssp             EEEESSS
T ss_pred             EEEeCCC
Confidence            9999995

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=1.5e-06  Score=83.92  Aligned_cols=102  Identities=17%  Similarity=0.180  Sum_probs=77.1

Q ss_pred             HHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572          286 DILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE  363 (457)
Q Consensus       286 ~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~  363 (457)
                      ..+++.|.+.+.  +++.||++|+|.|++|..|+++  +.+|++||+|+..++..++....     .+|++.+++|+.+.
T Consensus        16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk~   88 (259)
T COG0030          16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALKF   88 (259)
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhcC
Confidence            344566666543  6789999999999999999986  45899999999999988876542     36899999999875


Q ss_pred             cccccCCccEEEECCCCCCccHHHHHHHHhc
Q 044572          364 PLSWLVGSDVLVVDPPRKGLDSSLVHALQSI  394 (457)
Q Consensus       364 ~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~  394 (457)
                      .......++.||.|-|+.--++-+.+.+...
T Consensus        89 d~~~l~~~~~vVaNlPY~Isspii~kll~~~  119 (259)
T COG0030          89 DFPSLAQPYKVVANLPYNISSPILFKLLEEK  119 (259)
T ss_pred             cchhhcCCCEEEEcCCCcccHHHHHHHHhcc
Confidence            4221116899999999987666445444433

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.52  E-value=5.7e-07  Score=83.40  Aligned_cols=99  Identities=15%  Similarity=0.095  Sum_probs=69.4

Q ss_pred             HhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCcc
Q 044572          293 QKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSD  372 (457)
Q Consensus       293 ~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D  372 (457)
                      .+.+ +..++|||+||.|--++.||+.+-  .|+|+|+|+.+++.+++-++..  + . +++....|+.+..  +...||
T Consensus        26 ~~~~-~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~--~-l-~i~~~~~Dl~~~~--~~~~yD   96 (192)
T PF03848_consen   26 VPLL-KPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEE--G-L-DIRTRVADLNDFD--FPEEYD   96 (192)
T ss_dssp             CTTS--SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHT--T---TEEEEE-BGCCBS---TTTEE
T ss_pred             Hhhc-CCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhc--C-c-eeEEEEecchhcc--ccCCcC
Confidence            3444 467999999999999999998643  8999999999999998887762  2 2 4889999987653  335799


Q ss_pred             EEEE-------CCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          373 VLVV-------DPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       373 ~vi~-------DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      +|+.       +|++   -+.+++.+...-.++++..+
T Consensus        97 ~I~st~v~~fL~~~~---~~~i~~~m~~~~~pGG~~li  131 (192)
T PF03848_consen   97 FIVSTVVFMFLQREL---RPQIIENMKAATKPGGYNLI  131 (192)
T ss_dssp             EEEEESSGGGS-GGG---HHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEEEEEeccCCHHH---HHHHHHHHHhhcCCcEEEEE
Confidence            8864       4443   24577777765446666444

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.51  E-value=1.5e-06  Score=89.55  Aligned_cols=106  Identities=16%  Similarity=-0.010  Sum_probs=74.1

Q ss_pred             HHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc
Q 044572          288 LLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL  365 (457)
Q Consensus       288 l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~  365 (457)
                      .+..+.+.+  .++.+|||+|||+|.+++.+|+..+ .+|+|||+|+++++.|+++++.      .++++..+|..+.  
T Consensus       155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l--  225 (383)
T PRK11705        155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL--  225 (383)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc--
Confidence            334444433  4788999999999999999997644 3899999999999999998743      1478888887543  


Q ss_pred             cccCCccEEEECCCC--CCcc--HHHHHHHHhcCCCCcEEEEe
Q 044572          366 SWLVGSDVLVVDPPR--KGLD--SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       366 ~~~~~~D~vi~DPPR--~Gl~--~~v~~~l~~~~~~~~ivyvs  404 (457)
                        .+.||.|+...--  .|..  ..+++.+.++-.+++.+++.
T Consensus       226 --~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~  266 (383)
T PRK11705        226 --NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH  266 (383)
T ss_pred             --CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence              3579998864321  1111  24555555554577777764

>TIGR00452 methyltransferase, putative

Probab=98.51  E-value=1.5e-06  Score=86.89  Aligned_cols=113  Identities=14%  Similarity=0.046  Sum_probs=74.0

Q ss_pred             HHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572          286 DILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE  363 (457)
Q Consensus       286 ~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~  363 (457)
                      +..+..+...+.  ++++|||+|||+|.+++.++.. ++.+|+|||.|+.++..++...+..  ....++.+..+++.+.
T Consensus       107 ~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~~~~~~--~~~~~v~~~~~~ie~l  183 (314)
T TIGR00452       107 DIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGH-GAKSLVGIDPTVLFLCQFEAVRKLL--DNDKRAILEPLGIEQL  183 (314)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHHh--ccCCCeEEEECCHHHC
Confidence            333445555432  6889999999999999998874 5678999999999998765443321  1124678888888765


Q ss_pred             cccccCCccEEEECCC---CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          364 PLSWLVGSDVLVVDPP---RKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       364 ~~~~~~~~D~vi~DPP---R~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ..  ...||+|+..=-   +.. ...+++.+.+.-.+++.++++
T Consensus       184 p~--~~~FD~V~s~gvL~H~~d-p~~~L~el~r~LkpGG~Lvle  224 (314)
T TIGR00452       184 HE--LYAFDTVFSMGVLYHRKS-PLEHLKQLKHQLVIKGELVLE  224 (314)
T ss_pred             CC--CCCcCEEEEcchhhccCC-HHHHHHHHHHhcCCCCEEEEE
Confidence            32  247999986311   111 124666666644466666654

Known examples to date are restricted to the proteobacteria.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.51  E-value=4.9e-07  Score=85.03  Aligned_cols=116  Identities=16%  Similarity=0.087  Sum_probs=84.8

Q ss_pred             HHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572          285 FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE  363 (457)
Q Consensus       285 ~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~  363 (457)
                      ...++..+.... ..++||++|+|+|.-++.+|...+ -.+|+.||.+++..+.|++|++..+  ..++|+++.||+.+.
T Consensus        33 ~g~lL~~l~~~~-~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--~~~~I~~~~gda~~~  109 (205)
T PF01596_consen   33 TGQLLQMLVRLT-RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--LDDRIEVIEGDALEV  109 (205)
T ss_dssp             HHHHHHHHHHHH-T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT--GGGGEEEEES-HHHH
T ss_pred             HHHHHHHHHHhc-CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC--CCCcEEEEEeccHhh
Confidence            345556655544 468999999999999999997432 3599999999999999999999853  447899999999876


Q ss_pred             ccccc-----CCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          364 PLSWL-----VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       364 ~~~~~-----~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +..+.     +.||+||+|=.......-+-..+..+ .+++++.+-
T Consensus       110 l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll-~~ggvii~D  154 (205)
T PF01596_consen  110 LPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLL-RPGGVIIAD  154 (205)
T ss_dssp             HHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHE-EEEEEEEEE
T ss_pred             HHHHHhccCCCceeEEEEcccccchhhHHHHHhhhc-cCCeEEEEc
Confidence            65431     36999999998655443333333444 477777764

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.50  E-value=6.7e-07  Score=85.20  Aligned_cols=71  Identities=21%  Similarity=0.269  Sum_probs=57.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      ++.+|||+|||+|.++..++...  .+|+|+|+++.+++.|++++...  +..++++|+.+|...    ..+.||+|+.
T Consensus        63 ~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~--~~~~~i~~~~~d~~~----~~~~fD~v~~  133 (230)
T PRK07580         63 TGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEA--GLAGNITFEVGDLES----LLGRFDTVVC  133 (230)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc--CCccCcEEEEcCchh----ccCCcCEEEE
Confidence            57899999999999999999753  37999999999999999998763  222578999999432    2357998876

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.50  E-value=6.5e-07  Score=72.22  Aligned_cols=66  Identities=23%  Similarity=0.270  Sum_probs=52.3

Q ss_pred             EEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          303 TDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       303 LDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      ||+|||+|.++..+++. +..+|+++|+++++++.++++...      .++.++.+|+.+.... .+.||+|+.
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~-~~sfD~v~~   66 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFP-DNSFDVVFS   66 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS--TT-EEEEEE
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccc-ccccccccc
Confidence            89999999999999986 457999999999999999998654      3566999999886432 467999976

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.50  E-value=1.5e-06  Score=85.44  Aligned_cols=84  Identities=17%  Similarity=0.148  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHhhCC-CCCeEEEEcccccHHHHHHHhhCC---CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEcc
Q 044572          284 AFDILLRKLQKYVP-YGASVTDLYAGAGVIGLSLAAARK---CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD  359 (457)
Q Consensus       284 ~~~~l~~~i~~~~~-~~~~vLDl~cG~G~~sl~lA~~~~---~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d  359 (457)
                      ..+.+.+.+.+.+. ...+|||+|||+|.++..++...+   ...|+|+|+|+.|++.|+++.        .++.|..+|
T Consensus        70 l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~--------~~~~~~~~d  141 (272)
T PRK11088         70 LRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY--------PQVTFCVAS  141 (272)
T ss_pred             HHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC--------CCCeEEEee
Confidence            33444455555443 457899999999999999886532   137999999999999987642        357899999


Q ss_pred             CCcCcccccCCccEEEE
Q 044572          360 NSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       360 ~~~~~~~~~~~~D~vi~  376 (457)
                      +.+.... .+.||+|+.
T Consensus       142 ~~~lp~~-~~sfD~I~~  157 (272)
T PRK11088        142 SHRLPFA-DQSLDAIIR  157 (272)
T ss_pred             cccCCCc-CCceeEEEE
Confidence            8775322 357998875

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.49  E-value=1.4e-06  Score=82.55  Aligned_cols=106  Identities=19%  Similarity=0.059  Sum_probs=66.3

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCC---------CCCCCcEEEEEccCCcCcccc
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP---------KSVDGNISWHNADNSIEPLSW  367 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~---------~~~~~nv~~~~~d~~~~~~~~  367 (457)
                      .++.+|||+|||.|..++.||.++  -.|+|||+|+.|++.|.+.+....         .....+++++++|+++.....
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            367899999999999999999853  389999999999998643221100         001246899999998765333


Q ss_pred             cCCccEEEECCCCCCc----cHHHHHHHHhcCCCCc-EEEEe
Q 044572          368 LVGSDVLVVDPPRKGL----DSSLVHALQSIGSAER-KAKSL  404 (457)
Q Consensus       368 ~~~~D~vi~DPPR~Gl----~~~v~~~l~~~~~~~~-ivyvs  404 (457)
                      ...||.|+-----..+    -...++.+.++-.+++ +++++
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~  152 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT  152 (213)
T ss_pred             CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence            3457765421000011    1234555555444555 55553

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=98.49  E-value=9.1e-08  Score=92.35  Aligned_cols=145  Identities=18%  Similarity=0.201  Sum_probs=98.7

Q ss_pred             CeEEEeeccCeEEE-eeeeEEEEECC--CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEE
Q 044572          250 NRWRHLLGETDFWE-NVGGIDISLAP--SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVK  326 (457)
Q Consensus       250 ~~~~~l~G~~~~~~-~~~g~~~~i~~--~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~  326 (457)
                      ...+.|+|+.-+.+ .-+|++|.++|  ..|...|...-.    ++..+...++.|+|||+|.|.|+++..-+.||+.|+
T Consensus       147 ~~v~~L~Gd~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~----Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~  222 (351)
T KOG1227|consen  147 PNVQPLYGDLGWVKHVQNGITQIWDPTKTMFSRGNIKEKK----RVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVF  222 (351)
T ss_pred             CccccccccccceeehhcCeEEEechhhhhhhcCcHHHHH----HhhhcccccchhhhhhcccceEEeehhhccCccEEE
Confidence            35678999876554 34699999997  688888854433    344444468999999999999999665568899999


Q ss_pred             EEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC--CCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          327 CVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD--PPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       327 gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D--PPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+|.||.+++..++|++.|  +..+....+.||....-.  ....|-|.+-  |.-.+--...+++|..-  .+.++.|-
T Consensus       223 A~EwNp~svEaLrR~~~~N--~V~~r~~i~~gd~R~~~~--~~~AdrVnLGLlPSse~~W~~A~k~Lk~e--ggsilHIH  296 (351)
T KOG1227|consen  223 ACEWNPWSVEALRRNAEAN--NVMDRCRITEGDNRNPKP--RLRADRVNLGLLPSSEQGWPTAIKALKPE--GGSILHIH  296 (351)
T ss_pred             EEecCHHHHHHHHHHHHhc--chHHHHHhhhccccccCc--cccchheeeccccccccchHHHHHHhhhc--CCcEEEEe
Confidence            9999999999999999984  455666677777644322  2345655442  22222222344444332  34488875

>PRK06922 hypothetical protein; Provisional

Probab=98.48  E-value=1.5e-06  Score=93.32  Aligned_cols=78  Identities=15%  Similarity=0.155  Sum_probs=62.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~  376 (457)
                      ++.+|||+|||+|.++..+|......+|+|+|+|+.|++.|++++...    ..+++++++|+.+....+ .+.||+|+.
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----g~~ie~I~gDa~dLp~~fedeSFDvVVs  493 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----GRSWNVIKGDAINLSSSFEKESVDTIVY  493 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCCeEEEEcchHhCccccCCCCEEEEEE
Confidence            578999999999999998887554569999999999999999987642    146889999987643112 257999998


Q ss_pred             CCC
Q 044572          377 DPP  379 (457)
Q Consensus       377 DPP  379 (457)
                      +++
T Consensus       494 n~v  496 (677)
T PRK06922        494 SSI  496 (677)
T ss_pred             chH
Confidence            764

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=3.8e-06  Score=75.91  Aligned_cols=76  Identities=22%  Similarity=0.157  Sum_probs=63.6

Q ss_pred             CCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          299 GASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      -+.++|+|||+|..+-.|++.-+ .....+.|+|++|.+..++.|+.|+    .++..++.|+.+.+..  ++.|++++|
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~----~~~~~V~tdl~~~l~~--~~VDvLvfN  117 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR----VHIDVVRTDLLSGLRN--ESVDVLVFN  117 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC----CccceeehhHHhhhcc--CCccEEEEC
Confidence            56799999999999988887533 4568999999999999999998743    3578899998876654  789999999


Q ss_pred             CCC
Q 044572          378 PPR  380 (457)
Q Consensus       378 PPR  380 (457)
                      ||+
T Consensus       118 PPY  120 (209)
T KOG3191|consen  118 PPY  120 (209)
T ss_pred             CCc
Confidence            996

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=3.9e-06  Score=85.59  Aligned_cols=112  Identities=21%  Similarity=0.174  Sum_probs=83.2

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC--CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc--CCcc
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK--CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL--VGSD  372 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~--~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~--~~~D  372 (457)
                      .+|++|||+|++-|+=|.++|....  ...|+++|+++.=++..++|+++++   ..|+..++.|.......+.  ..||
T Consensus       155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG---~~nv~~~~~d~~~~~~~~~~~~~fD  231 (355)
T COG0144         155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG---VRNVIVVNKDARRLAELLPGGEKFD  231 (355)
T ss_pred             CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC---CCceEEEecccccccccccccCcCc
Confidence            4799999999999999999987643  2357999999999999999999953   4678888888765543332  2499


Q ss_pred             EEEECCCCCCccH------------------------HHHH-HHHhcCCCCcEEEEeccCCCCCchhch
Q 044572          373 VLVVDPPRKGLDS------------------------SLVH-ALQSIGSAERKAKSLSESSSSMVKEEK  416 (457)
Q Consensus       373 ~vi~DPPR~Gl~~------------------------~v~~-~l~~~~~~~~ivyvs~~~~~c~~~~~~  416 (457)
                      .|++|+|-+|..-                        ++++ ++..+++++.+||++     |+.....
T Consensus       232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST-----CS~~~eE  295 (355)
T COG0144         232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST-----CSLTPEE  295 (355)
T ss_pred             EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc-----cCCchhc
Confidence            9999999554321                        1222 333456789999998     8866543

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.44  E-value=4.6e-06  Score=79.49  Aligned_cols=103  Identities=16%  Similarity=0.171  Sum_probs=72.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      ++.+|||+|||+|.++..++...+ ..+|+++|+++.+++.+++++...  +...++.++.+|+.+.... ...||+|++
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~-~~~~D~I~~  127 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL--GLSGNVEFVQGDAEALPFP-DNSFDAVTI  127 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc--ccccCeEEEecccccCCCC-CCCccEEEE
Confidence            578999999999999999998653 369999999999999999998652  2335789999998775422 357999886


Q ss_pred             CCCCC--CccHHHHHHHHhcCCCCcEEEE
Q 044572          377 DPPRK--GLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       377 DPPR~--Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      .---.  .-...+++.+..+-.+++.+.+
T Consensus       128 ~~~l~~~~~~~~~l~~~~~~L~~gG~li~  156 (239)
T PRK00216        128 AFGLRNVPDIDKALREMYRVLKPGGRLVI  156 (239)
T ss_pred             ecccccCCCHHHHHHHHHHhccCCcEEEE
Confidence            32100  0112455555554445554444

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.44  E-value=1.8e-06  Score=84.33  Aligned_cols=81  Identities=19%  Similarity=0.151  Sum_probs=64.2

Q ss_pred             HHHHHhh--CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc
Q 044572          289 LRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS  366 (457)
Q Consensus       289 ~~~i~~~--~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~  366 (457)
                      ++.+.+.  +++|++|||+|||-|.+++.+|+..+ .+|+||++|++..+.+++-++..  +...+++++-.|-.++.  
T Consensus        61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~-v~V~GvTlS~~Q~~~~~~r~~~~--gl~~~v~v~l~d~rd~~--  135 (283)
T COG2230          61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG-VTVVGVTLSEEQLAYAEKRIAAR--GLEDNVEVRLQDYRDFE--  135 (283)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC-CEEEEeeCCHHHHHHHHHHHHHc--CCCcccEEEeccccccc--
Confidence            3444443  35899999999999999999998753 58999999999999999988774  34468999888876643  


Q ss_pred             ccCCccEEEE
Q 044572          367 WLVGSDVLVV  376 (457)
Q Consensus       367 ~~~~~D~vi~  376 (457)
                        +.||.||.
T Consensus       136 --e~fDrIvS  143 (283)
T COG2230         136 --EPFDRIVS  143 (283)
T ss_pred             --cccceeee
Confidence              34897764

>PRK08317 hypothetical protein; Provisional

Probab=98.43  E-value=5.4e-06  Score=78.83  Aligned_cols=102  Identities=14%  Similarity=0.087  Sum_probs=69.9

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .++.+|||+|||+|.++..++... ...+|+|+|+++.+++.|+++...    ...+++++.+|+...... ...||+|+
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~----~~~~~~~~~~d~~~~~~~-~~~~D~v~   92 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG----LGPNVEFVRGDADGLPFP-DGSFDAVR   92 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC----CCCceEEEecccccCCCC-CCCceEEE
Confidence            367899999999999999999764 246899999999999999988432    235789999998764321 35799998


Q ss_pred             ECCCCCCc--cHHHHHHHHhcCCCCcEEEE
Q 044572          376 VDPPRKGL--DSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       376 ~DPPR~Gl--~~~v~~~l~~~~~~~~ivyv  403 (457)
                      ++---.-+  ...+++.+.++-.+++.+.+
T Consensus        93 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~  122 (241)
T PRK08317         93 SDRVLQHLEDPARALAEIARVLRPGGRVVV  122 (241)
T ss_pred             EechhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence            75321100  12345555443334554444

>PRK05785 hypothetical protein; Provisional

Probab=98.42  E-value=1.5e-06  Score=83.10  Aligned_cols=79  Identities=15%  Similarity=0.063  Sum_probs=58.4

Q ss_pred             HHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc
Q 044572          287 ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS  366 (457)
Q Consensus       287 ~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~  366 (457)
                      .+++.+..+..++.+|||+|||+|.++..++... ..+|+|||.|++|++.|+++.           .++++|+++....
T Consensus        40 ~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~-----------~~~~~d~~~lp~~  107 (226)
T PRK05785         40 ELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD-----------DKVVGSFEALPFR  107 (226)
T ss_pred             HHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc-----------ceEEechhhCCCC
Confidence            4445555544457899999999999999999763 249999999999999987531           3567888765322


Q ss_pred             ccCCccEEEECC
Q 044572          367 WLVGSDVLVVDP  378 (457)
Q Consensus       367 ~~~~~D~vi~DP  378 (457)
                       .+.||+|++.-
T Consensus       108 -d~sfD~v~~~~  118 (226)
T PRK05785        108 -DKSFDVVMSSF  118 (226)
T ss_pred             -CCCEEEEEecC
Confidence             36799998743

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.42  E-value=1.4e-06  Score=85.21  Aligned_cols=129  Identities=12%  Similarity=0.126  Sum_probs=82.8

Q ss_pred             EECCCCCCCCCHHHHHHHHHHHHhhC------CCCCeEEEEcccccH----HHHHHHhhCC-----CCEEEEEeCCHHHH
Q 044572          271 SLAPSSFGQANTRAFDILLRKLQKYV------PYGASVTDLYAGAGV----IGLSLAAARK-----CRSVKCVEINKESQ  335 (457)
Q Consensus       271 ~i~~~~FfQ~n~~~~~~l~~~i~~~~------~~~~~vLDl~cG~G~----~sl~lA~~~~-----~~~V~gVE~~~~av  335 (457)
                      .+..+.||.. ..+.+.|.+.+...+      ..+.+|||+|||+|-    +++.++....     ..+|+|+|+|+.|+
T Consensus        67 ti~~T~FfR~-~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L  145 (264)
T smart00138       67 TTNETRFFRE-SKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKAL  145 (264)
T ss_pred             hcCCCcccCC-cHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHH
Confidence            4456788874 456666666554321      134689999999995    6666665322     24899999999999


Q ss_pred             HHHHHHHh------hCC-----------C-------CCCCcEEEEEccCCcCcccccCCccEEEECCCCCCc-------c
Q 044572          336 LSFEKTVS------RLP-----------K-------SVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGL-------D  384 (457)
Q Consensus       336 ~~A~~Na~------~~~-----------~-------~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl-------~  384 (457)
                      +.|++++-      ...           .       ....+|+|.++|+.+.... .+.||+|++   |..+       .
T Consensus       146 ~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~-~~~fD~I~c---rnvl~yf~~~~~  221 (264)
T smart00138      146 EKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPP-LGDFDLIFC---RNVLIYFDEPTQ  221 (264)
T ss_pred             HHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCc-cCCCCEEEe---chhHHhCCHHHH
Confidence            99998641      000           0       0114789999999875321 367999987   3221       1


Q ss_pred             HHHHHHHHhcCCCCcEEEEe
Q 044572          385 SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       385 ~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ..+++.+...-.+++.+++.
T Consensus       222 ~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      222 RKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             HHHHHHHHHHhCCCeEEEEE
Confidence            23555555544577777775

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.39  E-value=1.6e-06  Score=80.80  Aligned_cols=94  Identities=14%  Similarity=0.199  Sum_probs=64.8

Q ss_pred             HHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-c
Q 044572          290 RKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-L  368 (457)
Q Consensus       290 ~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~  368 (457)
                      +.+.++++++.+|||+|||+|.++..++...+ ..++|||+++++++.|+++          +++++++|+.+.+... .
T Consensus         5 ~~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~i~~a~~~----------~~~~~~~d~~~~l~~~~~   73 (194)
T TIGR02081         5 ESILNLIPPGSRVLDLGCGDGELLALLRDEKQ-VRGYGIEIDQDGVLACVAR----------GVNVIQGDLDEGLEAFPD   73 (194)
T ss_pred             HHHHHhcCCCCEEEEeCCCCCHHHHHHHhccC-CcEEEEeCCHHHHHHHHHc----------CCeEEEEEhhhcccccCC
Confidence            44555566788999999999999999986433 4789999999999887531          3578889987533212 3


Q ss_pred             CCccEEEECCCCCCc--cHHHHHHHHhc
Q 044572          369 VGSDVLVVDPPRKGL--DSSLVHALQSI  394 (457)
Q Consensus       369 ~~~D~vi~DPPR~Gl--~~~v~~~l~~~  394 (457)
                      +.||+|++...-.-+  ...+++.+.+.
T Consensus        74 ~sfD~Vi~~~~l~~~~d~~~~l~e~~r~  101 (194)
T TIGR02081        74 KSFDYVILSQTLQATRNPEEILDEMLRV  101 (194)
T ss_pred             CCcCEEEEhhHhHcCcCHHHHHHHHHHh
Confidence            579999987653222  12345555444

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.39  E-value=4.7e-06  Score=78.70  Aligned_cols=117  Identities=14%  Similarity=0.062  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE-ccCC
Q 044572          284 AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN-ADNS  361 (457)
Q Consensus       284 ~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~-~d~~  361 (457)
                      ....++..+.... +.++||++|.+.|.-++.+|.... -.+++.||++++..+.|++|.+..  +..++++.+. +|+.
T Consensus        46 e~g~~L~~L~~~~-~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a--g~~~~i~~~~~gdal  122 (219)
T COG4122          46 ETGALLRLLARLS-GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA--GVDDRIELLLGGDAL  122 (219)
T ss_pred             hHHHHHHHHHHhc-CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc--CCcceEEEEecCcHH
Confidence            3445556666644 678999999999999999997544 468999999999999999999985  3445688888 5887


Q ss_pred             cCccc-ccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          362 IEPLS-WLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       362 ~~~~~-~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.+.. ..+.||+||+|=-..-. ++.++.+..+-.++++|.+-
T Consensus       123 ~~l~~~~~~~fDliFIDadK~~y-p~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         123 DVLSRLLDGSFDLVFIDADKADY-PEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             HHHHhccCCCccEEEEeCChhhC-HHHHHHHHHHhCCCcEEEEe
Confidence            76654 34789999999764443 34566555555588888873

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.39  E-value=2.3e-06  Score=78.49  Aligned_cols=123  Identities=20%  Similarity=0.191  Sum_probs=70.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc-ccc--cCCccEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP-LSW--LVGSDVL  374 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~-~~~--~~~~D~v  374 (457)
                      .+.+|||||||+|..|+.+|...++.+|+.-|.++ +++.++.|++.|+.....++++...|..+.. ...  ...||+|
T Consensus        45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I  123 (173)
T PF10294_consen   45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI  123 (173)
T ss_dssp             TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred             CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence            68899999999999999999874678999999999 9999999999853213457788777765432 111  2469987


Q ss_pred             EE-CCCCC-CccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHH
Q 044572          375 VV-DPPRK-GLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKE  425 (457)
Q Consensus       375 i~-DPPR~-Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~  425 (457)
                      +. |==+. .+.+.+++.+..+-.++..+|++...+    ....+.|++.+++
T Consensus       124 lasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R----~~~~~~F~~~~~k  172 (173)
T PF10294_consen  124 LASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR----RKSEQEFFDRLKK  172 (173)
T ss_dssp             EEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S-----TGGCHHHHHH--
T ss_pred             EEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe----cHHHHHHHHHhhh
Confidence            65 22221 234456677766544555588762222    2234667777654

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR03438 probable methyltransferase

Probab=98.38  E-value=6.7e-06  Score=82.07  Aligned_cols=111  Identities=7%  Similarity=-0.051  Sum_probs=71.3

Q ss_pred             HHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccC
Q 044572          291 KLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLV  369 (457)
Q Consensus       291 ~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~  369 (457)
                      .+.+.+.++.+|||||||+|..+..++.... ..+|++||+|++|++.|++++...  ....++.++++|..+... +..
T Consensus        56 ~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~--~p~~~v~~i~gD~~~~~~-~~~  132 (301)
T TIGR03438        56 EIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD--YPQLEVHGICADFTQPLA-LPP  132 (301)
T ss_pred             HHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh--CCCceEEEEEEcccchhh-hhc
Confidence            3344455678999999999999999987532 358999999999999999987652  112367889999876421 112


Q ss_pred             C-----ccEEEECCCCCCccH----HHHHHHHhcCCCCcEEEEe
Q 044572          370 G-----SDVLVVDPPRKGLDS----SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       370 ~-----~D~vi~DPPR~Gl~~----~v~~~l~~~~~~~~ivyvs  404 (457)
                      .     ..+++++-.-.-+++    .+++.+.+.-.+++.+.+.
T Consensus       133 ~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       133 EPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             ccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            2     234555443222222    2455554443466666654

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.38  E-value=1.9e-06  Score=85.22  Aligned_cols=131  Identities=19%  Similarity=0.132  Sum_probs=91.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcE
Q 044572          275 SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNI  353 (457)
Q Consensus       275 ~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv  353 (457)
                      .++|.++- ....+...++. ..++++|||+||+.|+=+.++|...+ -..|+++|+++.-+...+.|+++++   ..++
T Consensus        64 ~G~~~vQd-~sS~l~~~~L~-~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g---~~~v  138 (283)
T PF01189_consen   64 NGLFYVQD-ESSQLVALALD-PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG---VFNV  138 (283)
T ss_dssp             TTSEEEHH-HHHHHHHHHHT-TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSE
T ss_pred             CCcEEecc-ccccccccccc-ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC---CceE
Confidence            34454432 23333333343 24789999999999999999998654 4699999999999999999999853   4688


Q ss_pred             EEEEccCCcCcccccC-CccEEEECCCCCCccH------------------------HHHH-HHHhc----CCCCcEEEE
Q 044572          354 SWHNADNSIEPLSWLV-GSDVLVVDPPRKGLDS------------------------SLVH-ALQSI----GSAERKAKS  403 (457)
Q Consensus       354 ~~~~~d~~~~~~~~~~-~~D~vi~DPPR~Gl~~------------------------~v~~-~l~~~----~~~~~ivyv  403 (457)
                      .....|+......... .||.|++|+|-+|...                        ++++ +...+    ++.+++||.
T Consensus       139 ~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYs  218 (283)
T PF01189_consen  139 IVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYS  218 (283)
T ss_dssp             EEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEE
T ss_pred             EEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEE
Confidence            8888887665332223 5999999999776521                        1222 23334    568899999


Q ss_pred             eccCCCCCchhc
Q 044572          404 LSESSSSMVKEE  415 (457)
Q Consensus       404 s~~~~~c~~~~~  415 (457)
                      +     |+....
T Consensus       219 T-----CS~~~e  225 (283)
T PF01189_consen  219 T-----CSLSPE  225 (283)
T ss_dssp             E-----SHHHGG
T ss_pred             e-----ccHHHH
Confidence            8     886544

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.36  E-value=3.3e-06  Score=76.29  Aligned_cols=77  Identities=17%  Similarity=0.171  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHhhC-----CC-CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044572          284 AFDILLRKLQKYV-----PY-GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN  357 (457)
Q Consensus       284 ~~~~l~~~i~~~~-----~~-~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~  357 (457)
                      +-+++++++.+.+     .+ ..+|||||||.|.+-..|+...-....+|||.++.|++.|+.-+++.  ...+.|+|.+
T Consensus        47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~--~~~n~I~f~q  124 (227)
T KOG1271|consen   47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD--GFSNEIRFQQ  124 (227)
T ss_pred             HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc--CCCcceeEEE
Confidence            3456666665543     22 34999999999999999998542345999999999999998777773  2333499999


Q ss_pred             ccCCc
Q 044572          358 ADNSI  362 (457)
Q Consensus       358 ~d~~~  362 (457)
                      .|+.+
T Consensus       125 ~DI~~  129 (227)
T KOG1271|consen  125 LDITD  129 (227)
T ss_pred             eeccC
Confidence            99986

>PLN02823 spermine synthase

Probab=98.36  E-value=3.9e-06  Score=84.70  Aligned_cols=107  Identities=14%  Similarity=0.060  Sum_probs=79.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC-CCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS-VDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~-~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      ..++||.+|+|.|..+..+.+.....+|+.||++++.++.|++....+... ...+++++.+|+..++....++||+||+
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            457899999999999998887555679999999999999999987542111 2468999999999877554568999999


Q ss_pred             CCCC---CC-----ccHHHHH-HHHhcCCCCcEEEEe
Q 044572          377 DPPR---KG-----LDSSLVH-ALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR---~G-----l~~~v~~-~l~~~~~~~~ivyvs  404 (457)
                      |.+-   .|     ...+..+ .+.+.-.+++++.+-
T Consensus       183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            9542   12     2446665 555544577776654

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=2.2e-06  Score=85.63  Aligned_cols=121  Identities=16%  Similarity=0.113  Sum_probs=87.9

Q ss_pred             CCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEc
Q 044572          279 QANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA  358 (457)
Q Consensus       279 Q~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~  358 (457)
                      |.|+...-..++...+..  ..+|+|.+||||.=|+.+|...+..+|+.-|+|++|++.+++|++.|   ...+...++.
T Consensus        35 ~~NRDlsV~~l~~~~~~~--~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N---~~~~~~v~n~  109 (380)
T COG1867          35 EFNRDLSVLVLKAFGKLL--PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN---SGEDAEVINK  109 (380)
T ss_pred             hhccchhHHHHHHhhccC--CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc---Ccccceeecc
Confidence            345555544444433321  67899999999999999998777668999999999999999999984   2345667779


Q ss_pred             cCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEecc
Q 044572          359 DNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSE  406 (457)
Q Consensus       359 d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~  406 (457)
                      |+..++.+....||+|=+||  .|-....+++.......++++-++.+
T Consensus       110 DAN~lm~~~~~~fd~IDiDP--FGSPaPFlDaA~~s~~~~G~l~vTAT  155 (380)
T COG1867         110 DANALLHELHRAFDVIDIDP--FGSPAPFLDAALRSVRRGGLLCVTAT  155 (380)
T ss_pred             hHHHHHHhcCCCccEEecCC--CCCCchHHHHHHHHhhcCCEEEEEec
Confidence            98877765446899999999  34334455554444335788888753

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.36  E-value=2.7e-06  Score=90.24  Aligned_cols=99  Identities=18%  Similarity=0.048  Sum_probs=68.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~  376 (457)
                      ++.+|||+|||+|.++..++..  ..+|+|||.++.+++.+++..     +...+++++++|+......+ .+.||+|++
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~-----~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~  109 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESIN-----GHYKNVKFMCADVTSPDLNISDGSVDLIFS  109 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHh-----ccCCceEEEEecccccccCCCCCCEEEEeh
Confidence            4679999999999999999976  459999999999998765421     22367999999986432112 257999999


Q ss_pred             CCCCCCcc----HHHHHHHHhcCCCCcEEEE
Q 044572          377 DPPRKGLD----SSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       377 DPPR~Gl~----~~v~~~l~~~~~~~~ivyv  403 (457)
                      +.+-.-+.    ..+++.+.+.-.+++++++
T Consensus       110 ~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~  140 (475)
T PLN02336        110 NWLLMYLSDKEVENLAERMVKWLKVGGYIFF  140 (475)
T ss_pred             hhhHHhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            88633222    2345555443335555544

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.33  E-value=6.2e-07  Score=91.85  Aligned_cols=103  Identities=18%  Similarity=0.167  Sum_probs=75.3

Q ss_pred             CCeEEEEcccccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCC-cEEEEEccCCcCcccccCCccEEEE
Q 044572          299 GASVTDLYAGAGVIGLSLAAA-RKCRSVKCVEINKESQLSFEKTVSRLPKSVDG-NISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~-~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~-nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .-++||..||||.=|+..|.. .+..+|++-|+|++|++.+++|++.|+  ... .++..+.|+...+......||+|=+
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~--~~~~~~~v~~~DAn~ll~~~~~~fD~IDl  127 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG--LEDERIEVSNMDANVLLYSRQERFDVIDL  127 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc--ccCceEEEehhhHHHHhhhccccCCEEEe
Confidence            348999999999999999987 567899999999999999999999853  333 5899999998765433467999999


Q ss_pred             CCCCCCccHHHHHHHHhcCCCCcEEEEec
Q 044572          377 DPPRKGLDSSLVHALQSIGSAERKAKSLS  405 (457)
Q Consensus       377 DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~  405 (457)
                      ||  .|-....+++..+....++++++++
T Consensus       128 DP--fGSp~pfldsA~~~v~~gGll~vTa  154 (377)
T PF02005_consen  128 DP--FGSPAPFLDSALQAVKDGGLLCVTA  154 (377)
T ss_dssp             ----SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             CC--CCCccHhHHHHHHHhhcCCEEEEec
Confidence            99  5655566666555444778999984

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.32  E-value=1.6e-06  Score=85.74  Aligned_cols=88  Identities=10%  Similarity=0.039  Sum_probs=68.8

Q ss_pred             HHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572          287 ILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE  363 (457)
Q Consensus       287 ~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~  363 (457)
                      .|++.+++.+.  ++..+||+.||.|+.+..++...+ ..+|+|+|.+++|++.|+++++.     .++++++++|..++
T Consensus         6 Vll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l   80 (296)
T PRK00050          6 VLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNL   80 (296)
T ss_pred             ccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHH
Confidence            45666666653  678999999999999999998653 35899999999999999987643     35899999998765


Q ss_pred             cccccC---CccEEEECCC
Q 044572          364 PLSWLV---GSDVLVVDPP  379 (457)
Q Consensus       364 ~~~~~~---~~D~vi~DPP  379 (457)
                      ......   .+|.|++|.-
T Consensus        81 ~~~l~~~~~~vDgIl~DLG   99 (296)
T PRK00050         81 KEVLAEGLGKVDGILLDLG   99 (296)
T ss_pred             HHHHHcCCCccCEEEECCC
Confidence            332222   6999998775

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.32  E-value=3.6e-06  Score=80.05  Aligned_cols=98  Identities=20%  Similarity=0.144  Sum_probs=65.5

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCC---------CCCCCcEEEEEccCCcCcccc
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP---------KSVDGNISWHNADNSIEPLSW  367 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~---------~~~~~nv~~~~~d~~~~~~~~  367 (457)
                      .++.+|||++||.|..++.||.++  -+|+|||+|+.|++.+........         .....+|+++++|+++.....
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G--~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~  113 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQG--HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD  113 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCC--CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence            357899999999999999999853  389999999999998643111100         001257899999998865443


Q ss_pred             cCCccEEE-------ECCCCCCccHHHHHHHHhcCCCCc
Q 044572          368 LVGSDVLV-------VDPPRKGLDSSLVHALQSIGSAER  399 (457)
Q Consensus       368 ~~~~D~vi-------~DPPR~Gl~~~v~~~l~~~~~~~~  399 (457)
                      ...||.|+       ++|.   .-...++.+..+-.+++
T Consensus       114 ~~~fd~v~D~~~~~~l~~~---~R~~~~~~l~~lL~pgG  149 (218)
T PRK13255        114 LADVDAVYDRAALIALPEE---MRERYVQQLAALLPAGC  149 (218)
T ss_pred             CCCeeEEEehHhHhhCCHH---HHHHHHHHHHHHcCCCC
Confidence            35677766       2222   12345666666544564

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.32  E-value=6.4e-06  Score=79.64  Aligned_cols=120  Identities=13%  Similarity=0.041  Sum_probs=87.1

Q ss_pred             CCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044572          279 QANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN  357 (457)
Q Consensus       279 Q~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~  357 (457)
                      ++..... .++..+.... ..++||++|+++|.-++.+|...+ -.+|+.+|.+++..+.|++|++..  +..++|+++.
T Consensus        62 ~~~~~~g-~lL~~l~~~~-~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a--g~~~~I~~~~  137 (247)
T PLN02589         62 TTSADEG-QFLNMLLKLI-NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA--GVAHKIDFRE  137 (247)
T ss_pred             ccCHHHH-HHHHHHHHHh-CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC--CCCCceEEEe
Confidence            3334444 4445555544 467999999999999999986422 358999999999999999999985  3457999999


Q ss_pred             ccCCcCcccc------cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          358 ADNSIEPLSW------LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       358 ~d~~~~~~~~------~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      ||+.+.+..+      .+.||+||+|=-...... ..+.+..+-.+++++.+
T Consensus       138 G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~-y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        138 GPALPVLDQMIEDGKYHGTFDFIFVDADKDNYIN-YHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             ccHHHHHHHHHhccccCCcccEEEecCCHHHhHH-HHHHHHHhcCCCeEEEE
Confidence            9998876553      257999999987555433 44444444457777665

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.31  E-value=1.1e-05  Score=80.69  Aligned_cols=74  Identities=11%  Similarity=0.055  Sum_probs=59.8

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.+++.+++.....+|+++|. +.+++.+++|++..  +..++++++.+|+++..  + ..+|+|++
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--gl~~rv~~~~~d~~~~~--~-~~~D~v~~  221 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK--GVADRMRGIAVDIYKES--Y-PEADAVLF  221 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC--CccceEEEEecCccCCC--C-CCCCEEEe
Confidence            3578999999999999999998765568999997 79999999999874  34568999999987532  1 34688765

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK06202 hypothetical protein; Provisional

Probab=98.31  E-value=2e-06  Score=82.41  Aligned_cols=75  Identities=13%  Similarity=0.061  Sum_probs=55.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC---C-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAAR---K-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDV  373 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~---~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~  373 (457)
                      ++.+|||+|||+|.++..++...   + ..+|+|||++++|++.|+++...      .++++..+++..... ..+.||+
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~-~~~~fD~  132 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQAVSDELVA-EGERFDV  132 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEEecccccc-cCCCccE
Confidence            56799999999999999988531   2 24899999999999999887543      235666666544322 2357999


Q ss_pred             EEECCC
Q 044572          374 LVVDPP  379 (457)
Q Consensus       374 vi~DPP  379 (457)
                      |++.--
T Consensus       133 V~~~~~  138 (232)
T PRK06202        133 VTSNHF  138 (232)
T ss_pred             EEECCe
Confidence            988643

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.30  E-value=1.7e-06  Score=85.95  Aligned_cols=74  Identities=20%  Similarity=0.190  Sum_probs=61.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .+++|||+|||+|.+++..|+ +|+++|+|||-+.-| +.|++.++.|  +..+.|++++|.+++.... .++.|+||.
T Consensus        60 ~dK~VlDVGcGtGILS~F~ak-AGA~~V~aVe~S~ia-~~a~~iv~~N--~~~~ii~vi~gkvEdi~LP-~eKVDiIvS  133 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAK-AGARKVYAVEASSIA-DFARKIVKDN--GLEDVITVIKGKVEDIELP-VEKVDIIVS  133 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHH-hCcceEEEEechHHH-HHHHHHHHhc--CccceEEEeecceEEEecC-ccceeEEee
Confidence            589999999999999999997 679999999998877 8899888874  4455699999999886322 367888876

>PRK04148 hypothetical protein; Provisional

Probab=98.30  E-value=1.2e-05  Score=70.08  Aligned_cols=71  Identities=17%  Similarity=0.184  Sum_probs=56.4

Q ss_pred             CCCeEEEEcccccH-HHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE-
Q 044572          298 YGASVTDLYAGAGV-IGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV-  375 (457)
Q Consensus       298 ~~~~vLDl~cG~G~-~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi-  375 (457)
                      ++.++||+|||+|. ++..|++.+  ..|+|+|+++.+++.|+++.          ++++.+|+++--..+-..+|+|. 
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~~----------~~~v~dDlf~p~~~~y~~a~liys   83 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKLG----------LNAFVDDLFNPNLEIYKNAKLIYS   83 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhC----------CeEEECcCCCCCHHHHhcCCEEEE
Confidence            46789999999996 999999753  49999999999998887641          47899999886555556788775 


Q ss_pred             ECCCC
Q 044572          376 VDPPR  380 (457)
Q Consensus       376 ~DPPR  380 (457)
                      +-||+
T Consensus        84 irpp~   88 (134)
T PRK04148         84 IRPPR   88 (134)
T ss_pred             eCCCH
Confidence            46664

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.28  E-value=5.7e-06  Score=77.30  Aligned_cols=120  Identities=15%  Similarity=0.137  Sum_probs=86.0

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc--CCccEEEE
Q 044572          299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL--VGSDVLVV  376 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~--~~~D~vi~  376 (457)
                      ...+||+|||.|.+.+.+|....-..++|||+....+..|.+.+...   +..|+.++++|+...+....  +..|.|.+
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~---~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i   94 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR---GLKNVRFLRGDARELLRRLFPPGSVDRIYI   94 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH---TTSSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh---cccceEEEEccHHHHHhhcccCCchheEEE
Confidence            44899999999999999999877788999999999999999888773   45899999999988654432  45776655


Q ss_pred             ---CC-C------CCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHh
Q 044572          377 ---DP-P------RKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEA  426 (457)
Q Consensus       377 ---DP-P------R~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~  426 (457)
                         || |      |.=+.++.++.+...-.+++.+++.     .+.....+...+.+...
T Consensus        95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~-----TD~~~y~~~~~~~~~~~  149 (195)
T PF02390_consen   95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA-----TDVEEYAEWMLEQFEES  149 (195)
T ss_dssp             ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE-----ES-HHHHHHHHHHHHHH
T ss_pred             eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE-----eCCHHHHHHHHHHHHhc
Confidence               66 4      3346677888887755578888886     55555555555555553

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.28  E-value=2.6e-06  Score=85.29  Aligned_cols=105  Identities=19%  Similarity=0.144  Sum_probs=65.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhC-------CCCEEEEEeCCHHHHHHHHHHHhhCCC
Q 044572          275 SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAAR-------KCRSVKCVEINKESQLSFEKTVSRLPK  347 (457)
Q Consensus       275 ~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~-------~~~~V~gVE~~~~av~~A~~Na~~~~~  347 (457)
                      +.||.. ...+..|++.+ . ...+.+|+|.+||+|.|-+.+....       ...+++|+|+++.++..|+.|+-..+ 
T Consensus        26 G~~~TP-~~i~~l~~~~~-~-~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~-  101 (311)
T PF02384_consen   26 GQFYTP-REIVDLMVKLL-N-PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG-  101 (311)
T ss_dssp             GGC----HHHHHHHHHHH-T-T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT-
T ss_pred             ceeehH-HHHHHHHHhhh-h-ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc-
Confidence            455543 55555555544 2 2357789999999999988887631       34589999999999999999986532 


Q ss_pred             CCCCcEEEEEccCCcCcccc-cCCccEEEECCCCCCc
Q 044572          348 SVDGNISWHNADNSIEPLSW-LVGSDVLVVDPPRKGL  383 (457)
Q Consensus       348 ~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~DPPR~Gl  383 (457)
                      ....+..+..+|........ ...||+||.|||....
T Consensus       102 ~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~  138 (311)
T PF02384_consen  102 IDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSK  138 (311)
T ss_dssp             HHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCE
T ss_pred             cccccccccccccccccccccccccccccCCCCcccc
Confidence            11233468888876543222 3579999999996543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.27  E-value=3.5e-06  Score=78.17  Aligned_cols=97  Identities=16%  Similarity=0.066  Sum_probs=72.4

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      .-.+|.|||||.|.-+-.|+++.....|+|||.|++|++.|++   ++     .+++|..+|+..+-..  ...|+++.|
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~---rl-----p~~~f~~aDl~~w~p~--~~~dllfaN   99 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ---RL-----PDATFEEADLRTWKPE--QPTDLLFAN   99 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH---hC-----CCCceecccHhhcCCC--Cccchhhhh
Confidence            4578999999999999999999888999999999999998854   32     4689999998775432  367888776


Q ss_pred             CCCC--CccHHHHHHHHhcCCCCcEEEEe
Q 044572          378 PPRK--GLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PPR~--Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ---.  --+.+++..+...-.+++.+.|-
T Consensus       100 AvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ  128 (257)
T COG4106         100 AVLQWLPDHPELLPRLVSQLAPGGVLAVQ  128 (257)
T ss_pred             hhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence            4311  11345555555444588888885

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.27  E-value=3.5e-06  Score=90.56  Aligned_cols=105  Identities=16%  Similarity=0.144  Sum_probs=72.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCC-----CCCeEEEEcccccHHHHHHHhhCC--------CCEEEEEeCCHHHHHHHHHH
Q 044572          275 SSFGQANTRAFDILLRKLQKYVP-----YGASVTDLYAGAGVIGLSLAAARK--------CRSVKCVEINKESQLSFEKT  341 (457)
Q Consensus       275 ~~FfQ~n~~~~~~l~~~i~~~~~-----~~~~vLDl~cG~G~~sl~lA~~~~--------~~~V~gVE~~~~av~~A~~N  341 (457)
                      +.||. ....++.|++.+.....     ...+|||.+||+|.|.+.++....        ...++|+|+++.++..|+.|
T Consensus         4 GqfyT-P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~   82 (524)
T TIGR02987         4 GTFFT-PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL   82 (524)
T ss_pred             cccCC-cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence            34554 46778888887755322     345899999999999999886431        14789999999999999999


Q ss_pred             HhhCCCCCCCcEEEEEccCCcC----cccccCCccEEEECCCCCCc
Q 044572          342 VSRLPKSVDGNISWHNADNSIE----PLSWLVGSDVLVVDPPRKGL  383 (457)
Q Consensus       342 a~~~~~~~~~nv~~~~~d~~~~----~~~~~~~~D~vi~DPPR~Gl  383 (457)
                      +...+   ...+..+++|....    .....+.||+||.|||+...
T Consensus        83 l~~~~---~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~  125 (524)
T TIGR02987        83 LGEFA---LLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRL  125 (524)
T ss_pred             HhhcC---CCCceeeecccccccccccccccCcccEEEeCCCcccc
Confidence            87642   11234455543321    11123579999999998654

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.27  E-value=2e-06  Score=78.00  Aligned_cols=69  Identities=22%  Similarity=0.225  Sum_probs=57.8

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .+.+.|||+|+|.++..+|..  +.+|++||.+|.-.+.|++|+..   ++..|++.+.+|+.+.-.   ...|+|+
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v---~g~~n~evv~gDA~~y~f---e~ADvvi  101 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHV---PGDVNWEVVVGDARDYDF---ENADVVI  101 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCC---CCCcceEEEecccccccc---cccceeH
Confidence            378999999999999999975  67999999999999999999876   456799999999987543   3445554

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.23  E-value=2e-05  Score=74.21  Aligned_cols=99  Identities=17%  Similarity=0.142  Sum_probs=69.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      ++.+|||+|||+|.++..+++..+. .+++++|+++.+++.++++...     ..+++++.+|+.+.... .+.||+|++
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~-~~~~D~i~~  112 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-----PLNIEFIQADAEALPFE-DNSFDAVTI  112 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-----CCCceEEecchhcCCCC-CCcEEEEEE
Confidence            5789999999999999999976432 4899999999999999988641     24789999999875422 357998876


Q ss_pred             CCC---CCCccHHHHHHHHhcCCCCcEEEE
Q 044572          377 DPP---RKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       377 DPP---R~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      .=-   ... ...+++.+.....+++.+++
T Consensus       113 ~~~~~~~~~-~~~~l~~~~~~L~~gG~l~~  141 (223)
T TIGR01934       113 AFGLRNVTD-IQKALREMYRVLKPGGRLVI  141 (223)
T ss_pred             eeeeCCccc-HHHHHHHHHHHcCCCcEEEE
Confidence            210   001 12455555554445555555

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.20  E-value=3.1e-07  Score=75.71  Aligned_cols=72  Identities=15%  Similarity=0.005  Sum_probs=44.9

Q ss_pred             EEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-CCccEEEEC
Q 044572          303 TDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-VGSDVLVVD  377 (457)
Q Consensus       303 LDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-~~~D~vi~D  377 (457)
                      ||+|||+|.++..++......+++|+|+|+.|++.|++......   ..+...+..+..+...... +.||+|++-
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~   73 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVAS   73 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhh
Confidence            79999999999999987555699999999999988888777632   2344555555444332222 489988763

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.19  E-value=5e-06  Score=81.53  Aligned_cols=76  Identities=20%  Similarity=0.193  Sum_probs=64.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      .++.|||+|||+|.++..+|. +|+++|++||.|. |.+.|++-++.  |+..++|..|.|.+++..  +.++.|++|..
T Consensus       177 ~~kiVlDVGaGSGILS~FAaq-AGA~~vYAvEAS~-MAqyA~~Lv~~--N~~~~rItVI~GKiEdie--LPEk~DviISE  250 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQ-AGAKKVYAVEASE-MAQYARKLVAS--NNLADRITVIPGKIEDIE--LPEKVDVIISE  250 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHH-hCcceEEEEehhH-HHHHHHHHHhc--CCccceEEEccCcccccc--CchhccEEEec
Confidence            578899999999999999987 6899999999875 66788887766  367789999999998753  34689999999


Q ss_pred             CC
Q 044572          378 PP  379 (457)
Q Consensus       378 PP  379 (457)
                      |-
T Consensus       251 PM  252 (517)
T KOG1500|consen  251 PM  252 (517)
T ss_pred             cc
Confidence            96

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=98.14  E-value=4e-06  Score=84.70  Aligned_cols=130  Identities=18%  Similarity=0.164  Sum_probs=94.8

Q ss_pred             CceeEEEEEEeecCCCCcccCCeEEEeeccCeEEE--eeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEc
Q 044572          229 EHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWE--NVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLY  306 (457)
Q Consensus       229 ~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~--~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~  306 (457)
                      .+.+..+..-++. .++.-...+.+.|.|+..+..  +.+|.+|.++.+.-|...+-..+.  +.+..+.+.|+.|-|+|
T Consensus       181 ~n~~ktvv~K~~~-Itn~yR~~~~eviAGe~n~vtevre~~~~Fk~DfskVYWnsRL~~Eh--erlsg~fk~gevv~D~F  257 (495)
T KOG2078|consen  181 NNLIKTVVNKIGR-ITNRYRNFKLEVIAGERNLVTEVREGGERFKFDFSKVYWNSRLSHEH--ERLSGLFKPGEVVCDVF  257 (495)
T ss_pred             CCCceEeeecccc-hhhhhcccCceEecCCCceEEEEecCCeeEEEecceEEeeccchhHH--HHHhhccCCcchhhhhh
Confidence            3455655433332 222333456788999875442  568999999987777765555554  45555667899999999


Q ss_pred             ccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572          307 AGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP  364 (457)
Q Consensus       307 cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~  364 (457)
                      ||+|-|+++++...  ..|++-|.++++++..+.|+..|. -...+++.+..|+.+++
T Consensus       258 aGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~lNk-v~~~~iei~Nmda~~Fl  312 (495)
T KOG2078|consen  258 AGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKLNK-VDPSAIEIFNMDAKDFL  312 (495)
T ss_pred             cCcCccccchhhcC--cEEEecCCCHHHHHHHHHhccccc-cchhheeeecccHHHHh
Confidence            99999999999754  489999999999999999998742 12235899999988766

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.09  E-value=3e-05  Score=74.38  Aligned_cols=115  Identities=21%  Similarity=0.203  Sum_probs=85.7

Q ss_pred             eeEEEEECCCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhC
Q 044572          266 GGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL  345 (457)
Q Consensus       266 ~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~  345 (457)
                      ++..|.-+.+-.+.-|......+++.+.  +.+++.||++|-|||.++..+...  +++|+|+|+++.++...++-.+..
T Consensus        28 ~~~kfnkd~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gt  103 (315)
T KOG0820|consen   28 GGSKFNKDFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGT  103 (315)
T ss_pred             cCcccccccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCC
Confidence            3556666666666677766666555422  357899999999999999999975  469999999999999888776543


Q ss_pred             CCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHH
Q 044572          346 PKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVH  389 (457)
Q Consensus       346 ~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~  389 (457)
                      .  .....+++.||..+..   ...||++|.|-|+.--++-+.+
T Consensus       104 p--~~~kLqV~~gD~lK~d---~P~fd~cVsNlPyqISSp~vfK  142 (315)
T KOG0820|consen  104 P--KSGKLQVLHGDFLKTD---LPRFDGCVSNLPYQISSPLVFK  142 (315)
T ss_pred             C--ccceeeEEecccccCC---CcccceeeccCCccccCHHHHH
Confidence            2  2357899999987642   3579999999998766654433

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=98.06  E-value=1.3e-05  Score=79.01  Aligned_cols=70  Identities=24%  Similarity=0.252  Sum_probs=55.6

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEEECCC
Q 044572          301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVVDPP  379 (457)
Q Consensus       301 ~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~DPP  379 (457)
                      +++|||||.|.+++.+.. .|+..|.++|+++.|++..++|...         ..+++|+.+..... ...+|+++.+||
T Consensus         2 ~v~dLFsG~Gg~~~gl~~-~G~~~v~a~e~~~~a~~~~~~N~~~---------~~~~~Di~~~~~~~~~~~~D~l~~gpP   71 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEK-AGFEIVAANEIDKSAAETYEANFPN---------KLIEGDITKIDEKDFIPDIDLLTGGFP   71 (275)
T ss_pred             cEEEEccCcchHHHHHHH-cCCEEEEEEeCCHHHHHHHHHhCCC---------CCccCccccCchhhcCCCCCEEEeCCC
Confidence            689999999999888876 5688899999999999999888642         14567776654322 357999999999


Q ss_pred             C
Q 044572          380 R  380 (457)
Q Consensus       380 R  380 (457)
                      -
T Consensus        72 C   72 (275)
T cd00315          72 C   72 (275)
T ss_pred             C
Confidence            3

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.03  E-value=2.9e-05  Score=81.43  Aligned_cols=98  Identities=18%  Similarity=0.150  Sum_probs=65.3

Q ss_pred             CCeEEEEcccccHHHHHHHhh----CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEE
Q 044572          299 GASVTDLYAGAGVIGLSLAAA----RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVL  374 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~----~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~v  374 (457)
                      +..|+|+|||+|.++..+++.    +++.+|+|||.|+.|+..+++-++.+  +..++|+++++|+.++-.  ..+.|+|
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n--~w~~~V~vi~~d~r~v~l--pekvDII  262 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN--GWGDKVTVIHGDMREVEL--PEKVDII  262 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT--TTTTTEEEEES-TTTSCH--SS-EEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc--CCCCeEEEEeCcccCCCC--CCceeEE
Confidence            467999999999998776653    23579999999999998877655553  345789999999988643  3589999


Q ss_pred             EECCC-CC---CccHHHHHHHHhcCCCCcE
Q 044572          375 VVDPP-RK---GLDSSLVHALQSIGSAERK  400 (457)
Q Consensus       375 i~DPP-R~---Gl~~~v~~~l~~~~~~~~i  400 (457)
                      |.-.= ..   .+.++++.+..+...++++
T Consensus       263 VSElLGsfg~nEl~pE~Lda~~rfLkp~Gi  292 (448)
T PF05185_consen  263 VSELLGSFGDNELSPECLDAADRFLKPDGI  292 (448)
T ss_dssp             EE---BTTBTTTSHHHHHHHGGGGEEEEEE
T ss_pred             EEeccCCccccccCHHHHHHHHhhcCCCCE
Confidence            98765 22   3455666666554334444

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.02  E-value=4e-05  Score=74.98  Aligned_cols=103  Identities=18%  Similarity=0.219  Sum_probs=75.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572          281 NTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN  360 (457)
Q Consensus       281 n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~  360 (457)
                      |...++.+++.+.  +.++..|||+|.|.|.+|..++...  ++|++||+++..++..++....     ..|++++.+|+
T Consensus        15 ~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~   85 (262)
T PF00398_consen   15 DPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDF   85 (262)
T ss_dssp             HHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-T
T ss_pred             CHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhh-----cccceeeecch
Confidence            4445555444332  1368999999999999999999874  6999999999999999876542     36899999999


Q ss_pred             CcCcccc--cCCccEEEECCCCCCccHHHHHHHHh
Q 044572          361 SIEPLSW--LVGSDVLVVDPPRKGLDSSLVHALQS  393 (457)
Q Consensus       361 ~~~~~~~--~~~~D~vi~DPPR~Gl~~~v~~~l~~  393 (457)
                      .++....  ......||.+.|+ .++..++..+..
T Consensus        86 l~~~~~~~~~~~~~~vv~NlPy-~is~~il~~ll~  119 (262)
T PF00398_consen   86 LKWDLYDLLKNQPLLVVGNLPY-NISSPILRKLLE  119 (262)
T ss_dssp             TTSCGGGHCSSSEEEEEEEETG-TGHHHHHHHHHH
T ss_pred             hccccHHhhcCCceEEEEEecc-cchHHHHHHHhh
Confidence            8754321  1345699999998 556666666665

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=4.9e-05  Score=70.35  Aligned_cols=114  Identities=18%  Similarity=0.124  Sum_probs=78.6

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEE--EEEeCCHHHHHHHHHHHhhCCCC-------CCCcEEEE
Q 044572          286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSV--KCVEINKESQLSFEKTVSRLPKS-------VDGNISWH  356 (457)
Q Consensus       286 ~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V--~gVE~~~~av~~A~~Na~~~~~~-------~~~nv~~~  356 (457)
                      ..+++.+...+.+|.+.||+|+|||.++-.+|...++.-.  +|||.-++.|+.+++|++..-.+       ...+..++
T Consensus        70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv  149 (237)
T KOG1661|consen   70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV  149 (237)
T ss_pred             HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence            3344444444568999999999999999999976654333  99999999999999998753110       12367788


Q ss_pred             EccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          357 NADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       357 ~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      .||....... ..+||.|.+----..+..++++   .++++++++.-
T Consensus       150 vGDgr~g~~e-~a~YDaIhvGAaa~~~pq~l~d---qL~~gGrllip  192 (237)
T KOG1661|consen  150 VGDGRKGYAE-QAPYDAIHVGAAASELPQELLD---QLKPGGRLLIP  192 (237)
T ss_pred             eCCccccCCc-cCCcceEEEccCccccHHHHHH---hhccCCeEEEe
Confidence            8888654332 3579999997444444444444   44556666655

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.02  E-value=1.7e-05  Score=70.54  Aligned_cols=102  Identities=20%  Similarity=0.145  Sum_probs=64.5

Q ss_pred             HHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc
Q 044572          287 ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS  366 (457)
Q Consensus       287 ~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~  366 (457)
                      .++..+.....++.+|||+|||+|.++..++.. +. +|+|+|+++.+++.      .       ++.....+.... ..
T Consensus        11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~~g~D~~~~~~~~------~-------~~~~~~~~~~~~-~~   74 (161)
T PF13489_consen   11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR-GF-EVTGVDISPQMIEK------R-------NVVFDNFDAQDP-PF   74 (161)
T ss_dssp             HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT-TS-EEEEEESSHHHHHH------T-------TSEEEEEECHTH-HC
T ss_pred             HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh-CC-EEEEEECCHHHHhh------h-------hhhhhhhhhhhh-hc
Confidence            334444443457899999999999999999875 44 99999999999987      1       112222222111 11


Q ss_pred             ccCCccEEEECCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          367 WLVGSDVLVVDPPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       367 ~~~~~D~vi~DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ..+.||+|++.==-.-+  ...+++.+.++-.+++.++++
T Consensus        75 ~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~  114 (161)
T PF13489_consen   75 PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVIS  114 (161)
T ss_dssp             HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEE
T ss_pred             cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEE
Confidence            23679999874110000  135677777665577777776

...

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.84  E-value=0.00012  Score=71.00  Aligned_cols=109  Identities=17%  Similarity=0.066  Sum_probs=80.2

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC-CCCCcEEEEEccCCcCcccccC-CccE
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK-SVDGNISWHNADNSIEPLSWLV-GSDV  373 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~-~~~~nv~~~~~d~~~~~~~~~~-~~D~  373 (457)
                      .+..++||=+|.|.|...-.+.+....++|+.||+++..++.|++-...... ....+++++.+|+..++.+... +||+
T Consensus        74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv  153 (246)
T PF01564_consen   74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV  153 (246)
T ss_dssp             SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred             CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence            3457899999999999999998765467999999999999999986543111 1246899999999888776656 8999


Q ss_pred             EEECCCCC-C-----ccHHHHHHHHhcCCCCcEEEEe
Q 044572          374 LVVDPPRK-G-----LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       374 vi~DPPR~-G-----l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ||+|.+-. +     .+.+..+.+.+.-.+++++.+-
T Consensus       154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~  190 (246)
T PF01564_consen  154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ  190 (246)
T ss_dssp             EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence            99998752 1     2457777777655577777765

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.84  E-value=6.7e-05  Score=70.56  Aligned_cols=112  Identities=17%  Similarity=0.120  Sum_probs=63.2

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh-------CCCCCCCcEEEEEccCCcCc--ccc
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR-------LPKSVDGNISWHNADNSIEP--LSW  367 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~-------~~~~~~~nv~~~~~d~~~~~--~~~  367 (457)
                      .+++.++|||||.|..-+.+|...++++++|||+.+...+.|+.+.+.       .+. ....+++.++|..+..  ..+
T Consensus        41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~-~~~~v~l~~gdfl~~~~~~~~  119 (205)
T PF08123_consen   41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK-RPGKVELIHGDFLDPDFVKDI  119 (205)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----EEEEECS-TTTHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc-ccccceeeccCccccHhHhhh
Confidence            478999999999999999888878899999999999999888765432       111 1357888999976531  122


Q ss_pred             cCCccEEEECCCCCC--ccHHHHHHHHhcCCCCcEEEEeccCCCCCc
Q 044572          368 LVGSDVLVVDPPRKG--LDSSLVHALQSIGSAERKAKSLSESSSSMV  412 (457)
Q Consensus       368 ~~~~D~vi~DPPR~G--l~~~v~~~l~~~~~~~~ivyvs~~~~~c~~  412 (457)
                      ....|+|++|-=-.+  +...+.+.+..++ ++..| || ..+.|..
T Consensus       120 ~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk-~G~~I-Is-~~~~~~~  163 (205)
T PF08123_consen  120 WSDADVVFVNNTCFDPDLNLALAELLLELK-PGARI-IS-TKPFCPR  163 (205)
T ss_dssp             GHC-SEEEE--TTT-HHHHHHHHHHHTTS--TT-EE-EE-SS-SS-T
T ss_pred             hcCCCEEEEeccccCHHHHHHHHHHHhcCC-CCCEE-EE-CCCcCCC
Confidence            346799999754332  2223444444554 44443 33 3455543

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.83  E-value=9.3e-05  Score=70.55  Aligned_cols=102  Identities=13%  Similarity=0.003  Sum_probs=67.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhC-------C--CCCCCcEEEEEccCCcCcc--c
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL-------P--KSVDGNISWHNADNSIEPL--S  366 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~-------~--~~~~~nv~~~~~d~~~~~~--~  366 (457)
                      ++.+||+.+||.|--.+.||..+-  +|+|||+|+.||+.+.+.....       .  .....+++++++|.+++..  .
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~  120 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN  120 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence            578999999999999999998643  7999999999999986521100       0  0012478999999998642  3


Q ss_pred             ccCCccEEE-------ECCCCCCccHHHHHHHHh-cCCCCcEEEEe
Q 044572          367 WLVGSDVLV-------VDPPRKGLDSSLVHALQS-IGSAERKAKSL  404 (457)
Q Consensus       367 ~~~~~D~vi-------~DPPR~Gl~~~v~~~l~~-~~~~~~ivyvs  404 (457)
                      +.+.||.|+       ++|..   -..-.+.+.. +++.+.++.++
T Consensus       121 ~~~~fD~VyDra~~~Alpp~~---R~~Y~~~l~~lL~pgg~llll~  163 (226)
T PRK13256        121 NLPVFDIWYDRGAYIALPNDL---RTNYAKMMLEVCSNNTQILLLV  163 (226)
T ss_pred             ccCCcCeeeeehhHhcCCHHH---HHHHHHHHHHHhCCCcEEEEEE
Confidence            345688753       23321   1234444444 44456666665

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.80  E-value=0.00027  Score=67.51  Aligned_cols=102  Identities=15%  Similarity=0.079  Sum_probs=80.6

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc--CCccEEEE-
Q 044572          300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL--VGSDVLVV-  376 (457)
Q Consensus       300 ~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~--~~~D~vi~-  376 (457)
                      ..+||+|||.|.+.+.+|....-.-++|||+....+..|.+.+...   ...|+.++++||...+..+.  +..|-|.+ 
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~---~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~  126 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKEL---GLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN  126 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHc---CCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE
Confidence            5899999999999999999876678999999999999999888874   33499999999987665443  25665555 


Q ss_pred             --CC-C------CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 --DP-P------RKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 --DP-P------R~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                        || |      |.-+.+..++.+...-.+++.+++.
T Consensus       127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a  163 (227)
T COG0220         127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA  163 (227)
T ss_pred             CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence              55 3      3456677888887766688888886

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.79  E-value=7.6e-05  Score=65.54  Aligned_cols=59  Identities=22%  Similarity=0.047  Sum_probs=49.4

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572          301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI  362 (457)
Q Consensus       301 ~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~  362 (457)
                      ++||+|||.|.+++.++......+|+++|.++.+++.+++|++.+   ...++++++..+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n---~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN---NLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc---CCCcEEEEEeeeeC
Confidence            489999999999999998654348999999999999999999873   33568888877654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.76  E-value=0.00014  Score=71.42  Aligned_cols=74  Identities=20%  Similarity=0.144  Sum_probs=52.4

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .|++|||+|||.|.++..++. .|++.|+|||-+...+..++.-.+..+  ....+.++-.-+++.. . .+.||+|+.
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~-~GA~~ViGiDP~~lf~~QF~~i~~~lg--~~~~~~~lplgvE~Lp-~-~~~FDtVF~  188 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLG-RGAKSVIGIDPSPLFYLQFEAIKHFLG--QDPPVFELPLGVEDLP-N-LGAFDTVFS  188 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhh-cCCCEEEEECCChHHHHHHHHHHHHhC--CCccEEEcCcchhhcc-c-cCCcCEEEE
Confidence            689999999999999999997 578999999999988877654333321  1123333323344433 2 468999986

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.75  E-value=0.00033  Score=61.91  Aligned_cols=104  Identities=19%  Similarity=0.135  Sum_probs=67.3

Q ss_pred             CCCeEEEEcccccHHHHHHHh-----hCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCcc
Q 044572          298 YGASVTDLYAGAGVIGLSLAA-----ARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSD  372 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~-----~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D  372 (457)
                      +...|+|+|||-|.+|..+|.     . ..-+|+|||.++..++.|++.++........+.++..++..+...  ....+
T Consensus        25 ~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  101 (141)
T PF13679_consen   25 RCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS--SDPPD  101 (141)
T ss_pred             CCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc--cCCCe
Confidence            467899999999999999997     3 345899999999999999988877432223556666665543211  12223


Q ss_pred             EEEECCCCCCccHHHHHHHHhcCCCCcEEEEec
Q 044572          373 VLVVDPPRKGLDSSLVHALQSIGSAERKAKSLS  405 (457)
Q Consensus       373 ~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~  405 (457)
                      +++-==.=..+++.+++...+ .....++.+.|
T Consensus       102 ~~vgLHaCG~Ls~~~l~~~~~-~~~~~l~~vpC  133 (141)
T PF13679_consen  102 ILVGLHACGDLSDRALRLFIR-PNARFLVLVPC  133 (141)
T ss_pred             EEEEeecccchHHHHHHHHHH-cCCCEEEEcCC
Confidence            332100112355567776666 44666666663

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.73  E-value=0.00038  Score=66.59  Aligned_cols=54  Identities=15%  Similarity=0.141  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHhh-C-CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHH
Q 044572          283 RAFDILLRKLQKY-V-PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS  337 (457)
Q Consensus       283 ~~~~~l~~~i~~~-~-~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~  337 (457)
                      ....+|...+..+ + .++.+|||+|||+|.|+..+++. |+++|+|||+++.++..
T Consensus        58 r~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        58 RGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             hhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence            3444544443332 1 26789999999999999999985 67899999999987765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.72  E-value=0.00015  Score=66.47  Aligned_cols=95  Identities=18%  Similarity=0.135  Sum_probs=71.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE-
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV-  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~-  376 (457)
                      .|++|||+|+|+|.-++..|+ .|++.|++.|+++.++..++.|++.|+    .++.+...|...    ....+|++++ 
T Consensus        79 rgkrVLd~gagsgLvaIAaa~-aGA~~v~a~d~~P~~~~ai~lNa~ang----v~i~~~~~d~~g----~~~~~Dl~Lag  149 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAAR-AGAAEVVAADIDPWLEQAIRLNAAANG----VSILFTHADLIG----SPPAFDLLLAG  149 (218)
T ss_pred             ccceeeecccccChHHHHHHH-hhhHHHHhcCCChHHHHHhhcchhhcc----ceeEEeeccccC----CCcceeEEEee
Confidence            589999999999999999987 678999999999999999999998742    468888877643    1246787654 


Q ss_pred             ----CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 ----DPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 ----DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                          |.+   ....++..+..+...+..|.|.
T Consensus       150 Dlfy~~~---~a~~l~~~~~~l~~~g~~vlvg  178 (218)
T COG3897         150 DLFYNHT---EADRLIPWKDRLAEAGAAVLVG  178 (218)
T ss_pred             ceecCch---HHHHHHHHHHHHHhCCCEEEEe
Confidence                443   2345666666665455555564

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.71  E-value=0.00035  Score=65.77  Aligned_cols=87  Identities=17%  Similarity=0.238  Sum_probs=65.4

Q ss_pred             EEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCC
Q 044572          302 VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK  381 (457)
Q Consensus       302 vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~  381 (457)
                      |+|+||--|.+++.|.+...+.+|+++|+++..++.|++|++..  +..+++++..+|-.+.+.. .+..|+||+    +
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~--~l~~~i~~rlgdGL~~l~~-~e~~d~ivI----A   73 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY--GLEDRIEVRLGDGLEVLKP-GEDVDTIVI----A   73 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--T-TTTEEEEE-SGGGG--G-GG---EEEE----E
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCcccEEEEECCcccccCC-CCCCCEEEE----e
Confidence            68999999999999999877889999999999999999999985  4467899999997765432 123688887    8


Q ss_pred             CccHHHHHHHHhcC
Q 044572          382 GLDSSLVHALQSIG  395 (457)
Q Consensus       382 Gl~~~v~~~l~~~~  395 (457)
                      |+...++..+....
T Consensus        74 GMGG~lI~~ILe~~   87 (205)
T PF04816_consen   74 GMGGELIIEILEAG   87 (205)
T ss_dssp             EE-HHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHhh
Confidence            98887776666543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.70  E-value=5.9e-05  Score=71.70  Aligned_cols=77  Identities=18%  Similarity=0.016  Sum_probs=54.9

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH-HHh-hC--CCC-----CCCcEEEEEccCCcCcccc
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK-TVS-RL--PKS-----VDGNISWHNADNSIEPLSW  367 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~-Na~-~~--~~~-----~~~nv~~~~~d~~~~~~~~  367 (457)
                      ..+.+||+.+||.|.-.+.||..+  -+|+|||+|+.|++.|.+ |.. ..  ...     ...+|+++++|.+++....
T Consensus        36 ~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~  113 (218)
T PF05724_consen   36 KPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED  113 (218)
T ss_dssp             STSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred             CCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence            457799999999999999999864  389999999999999843 221 00  000     1246899999999865444


Q ss_pred             cCCccEEE
Q 044572          368 LVGSDVLV  375 (457)
Q Consensus       368 ~~~~D~vi  375 (457)
                      .++||+|+
T Consensus       114 ~g~fD~iy  121 (218)
T PF05724_consen  114 VGKFDLIY  121 (218)
T ss_dssp             HHSEEEEE
T ss_pred             cCCceEEE
Confidence            45788875

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.69  E-value=1.4e-05  Score=74.75  Aligned_cols=99  Identities=15%  Similarity=0.090  Sum_probs=64.9

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc-ccCCccEEEEC
Q 044572          299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS-WLVGSDVLVVD  377 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~-~~~~~D~vi~D  377 (457)
                      =+++||||||||.+|..+-.+  +.+.+|||+|..|++.|.+.      +.-+  +..++|+..++.. ...+||+|+.-
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eK------g~YD--~L~~Aea~~Fl~~~~~er~DLi~Aa  195 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEK------GLYD--TLYVAEAVLFLEDLTQERFDLIVAA  195 (287)
T ss_pred             cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhc------cchH--HHHHHHHHHHhhhccCCcccchhhh
Confidence            378999999999999999876  56999999999999888753      1111  3445565554431 23578887542


Q ss_pred             C--CCCCccHHHHHHHHhcCCCCcEEEEeccC
Q 044572          378 P--PRKGLDSSLVHALQSIGSAERKAKSLSES  407 (457)
Q Consensus       378 P--PR~Gl~~~v~~~l~~~~~~~~ivyvs~~~  407 (457)
                      -  |+-|--..+.-....+-.+++++..|++.
T Consensus       196 DVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~  227 (287)
T COG4976         196 DVLPYLGALEGLFAGAAGLLAPGGLFAFSVET  227 (287)
T ss_pred             hHHHhhcchhhHHHHHHHhcCCCceEEEEecc
Confidence            1  56664444554444443466666665443

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.69  E-value=0.00072  Score=64.45  Aligned_cols=114  Identities=18%  Similarity=0.146  Sum_probs=65.3

Q ss_pred             CCCeEEEEccccc-HHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc-ccCCccEEE
Q 044572          298 YGASVTDLYAGAG-VIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS-WLVGSDVLV  375 (457)
Q Consensus       298 ~~~~vLDl~cG~G-~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~-~~~~~D~vi  375 (457)
                      .|++||=+  |-. .+|+++|.....++|+.+|+++..++..++.++..+   . +++.+..|+..-++. +.++||+++
T Consensus        44 ~gk~il~l--GDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g---l-~i~~~~~DlR~~LP~~~~~~fD~f~  117 (243)
T PF01861_consen   44 EGKRILFL--GDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG---L-PIEAVHYDLRDPLPEELRGKFDVFF  117 (243)
T ss_dssp             TT-EEEEE--S-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTTSS-BSEEE
T ss_pred             cCCEEEEE--cCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC---C-ceEEEEecccccCCHHHhcCCCEEE
Confidence            58889844  444 467777766667899999999999999999998843   2 389999999876553 457899999


Q ss_pred             ECCCCC--CccHHHHHHHHhcCCCCcEEEEeccCCCCCchh-chhhHHHH
Q 044572          376 VDPPRK--GLDSSLVHALQSIGSAERKAKSLSESSSSMVKE-EKRPWILR  422 (457)
Q Consensus       376 ~DPPR~--Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~-~~~~~~~~  422 (457)
                      .|||+.  |+.-=+-..+..++..+...|++     ...+. ....|...
T Consensus       118 TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~-----~~~~~~s~~~~~~~  162 (243)
T PF01861_consen  118 TDPPYTPEGLKLFLSRGIEALKGEGCAGYFG-----FTHKEASPDKWLEV  162 (243)
T ss_dssp             E---SSHHHHHHHHHHHHHTB-STT-EEEEE-----E-TTT--HHHHHHH
T ss_pred             eCCCCCHHHHHHHHHHHHHHhCCCCceEEEE-----EecCcCcHHHHHHH
Confidence            999985  44332344555666566688887     55443 24445443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.67  E-value=0.00031  Score=69.40  Aligned_cols=82  Identities=22%  Similarity=0.181  Sum_probs=49.6

Q ss_pred             CCeEEEEcccccHH-HHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC----cccccCCccE
Q 044572          299 GASVTDLYAGAGVI-GLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE----PLSWLVGSDV  373 (457)
Q Consensus       299 ~~~vLDl~cG~G~~-sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~----~~~~~~~~D~  373 (457)
                      .-++||+|+|+-.| .|..++..+ =+++|.|+++.+++.|++|++.|. +..++|+++...-...    +....+.||.
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~-W~fvaTdID~~sl~~A~~nv~~N~-~L~~~I~l~~~~~~~~i~~~i~~~~e~~df  180 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYG-WSFVATDIDPKSLESARENVERNP-NLESRIELRKQKNPDNIFDGIIQPNERFDF  180 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT--T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcC-CeEEEecCCHHHHHHHHHHHHhcc-ccccceEEEEcCCccccchhhhcccceeeE
Confidence            35799999999865 666666544 389999999999999999999852 4567898876543322    2111256999


Q ss_pred             EEECCCCCC
Q 044572          374 LVVDPPRKG  382 (457)
Q Consensus       374 vi~DPPR~G  382 (457)
                      .+.|||-..
T Consensus       181 tmCNPPFy~  189 (299)
T PF05971_consen  181 TMCNPPFYS  189 (299)
T ss_dssp             EEE-----S
T ss_pred             EecCCcccc
Confidence            999999543

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.62  E-value=0.00077  Score=63.55  Aligned_cols=111  Identities=16%  Similarity=0.065  Sum_probs=80.0

Q ss_pred             HHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc
Q 044572          290 RKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL  368 (457)
Q Consensus       290 ~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~  368 (457)
                      +.+.+.. ..+++||+|..||.-++..|.... -++|+++|+++++.+.+.+-.+..  +....|+++++++.+.+.++.
T Consensus        66 ~~li~~~-~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a--gv~~KI~~i~g~a~esLd~l~  142 (237)
T KOG1663|consen   66 QMLIRLL-NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA--GVDHKITFIEGPALESLDELL  142 (237)
T ss_pred             HHHHHHh-CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc--cccceeeeeecchhhhHHHHH
Confidence            3344433 478999999988877666665321 359999999999999998877763  456789999999988765542


Q ss_pred             -----CCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          369 -----VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       369 -----~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                           +.||.+|+|-=..-...-..+.+.-++ +++++.+-
T Consensus       143 ~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr-~GGvi~~D  182 (237)
T KOG1663|consen  143 ADGESGTFDFAFVDADKDNYSNYYERLLRLLR-VGGVIVVD  182 (237)
T ss_pred             hcCCCCceeEEEEccchHHHHHHHHHHHhhcc-cccEEEEe
Confidence                 469999999865444443444555554 78887774

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.62  E-value=0.0007  Score=65.16  Aligned_cols=82  Identities=15%  Similarity=0.166  Sum_probs=66.5

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVL  374 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~v  374 (457)
                      .+|.+|++.|.|+|.++..+|+..+ -.+++..|..+.-.+.|.+-.+.-  ...+|++++.-|+-..-... ...+|.|
T Consensus       104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h--gi~~~vt~~hrDVc~~GF~~ks~~aDaV  181 (314)
T KOG2915|consen  104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH--GIGDNVTVTHRDVCGSGFLIKSLKADAV  181 (314)
T ss_pred             CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh--CCCcceEEEEeecccCCccccccccceE
Confidence            4899999999999999999998753 269999999998888888877763  35689999999986543222 3569999


Q ss_pred             EECCCC
Q 044572          375 VVDPPR  380 (457)
Q Consensus       375 i~DPPR  380 (457)
                      ++|-|.
T Consensus       182 FLDlPa  187 (314)
T KOG2915|consen  182 FLDLPA  187 (314)
T ss_pred             EEcCCC
Confidence            999985

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.61  E-value=0.00056  Score=68.22  Aligned_cols=141  Identities=17%  Similarity=0.022  Sum_probs=94.3

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHh--h-CCCC-CCCcEEEEEccCC
Q 044572          286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS--R-LPKS-VDGNISWHNADNS  361 (457)
Q Consensus       286 ~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~--~-~~~~-~~~nv~~~~~d~~  361 (457)
                      |.|+--..+.++..++||=||.|-|.-.-.+.+.-+..+|+-||.+|++++.+++|..  . |.+. .+.+++.+..|++
T Consensus       277 EsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf  356 (508)
T COG4262         277 ESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAF  356 (508)
T ss_pred             heeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHH
Confidence            3333333344455688999999999999999886567899999999999999997732  2 2111 2458999999999


Q ss_pred             cCcccccCCccEEEECCCC--C---C--ccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhc
Q 044572          362 IEPLSWLVGSDVLVVDPPR--K---G--LDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEAS  427 (457)
Q Consensus       362 ~~~~~~~~~~D~vi~DPPR--~---G--l~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~  427 (457)
                      .++....+.||+||+|=|-  .   |  .+.++...+.+.-...+++.+-+.|.-..+..+.+ ....+++++
T Consensus       357 ~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~-i~aTik~AG  428 (508)
T COG4262         357 QWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWR-IDATIKSAG  428 (508)
T ss_pred             HHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeee-ehhHHHhCc
Confidence            9887666789999998762  1   1  23355555655444677777754444444444433 233344444

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.58  E-value=0.00024  Score=66.33  Aligned_cols=68  Identities=15%  Similarity=0.025  Sum_probs=49.9

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      ..-|||++||||.-+-.+...+  -..+|||||+.|++.|.+  +..  .    -.++.+|.-.-+..-.+.||-||.
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~--~e~--e----gdlil~DMG~GlpfrpGtFDg~IS  118 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVE--REL--E----GDLILCDMGEGLPFRPGTFDGVIS  118 (270)
T ss_pred             CcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHH--hhh--h----cCeeeeecCCCCCCCCCccceEEE
Confidence            5679999999999998888754  489999999999999986  221  1    156777766544333467886553

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.55  E-value=0.0015  Score=64.48  Aligned_cols=104  Identities=14%  Similarity=0.038  Sum_probs=81.9

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCC-CCcEEEEEccCCcCcccccCCccEEEECC
Q 044572          300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV-DGNISWHNADNSIEPLSWLVGSDVLVVDP  378 (457)
Q Consensus       300 ~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~-~~nv~~~~~d~~~~~~~~~~~~D~vi~DP  378 (457)
                      ++||=+|.|.|..+-.+.+.....+++.||++++.++.+++=........ ..+++.+.+|..+++.....+||+||+|=
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            59999999999999999987667899999999999999998655432111 47899999999988776556899999963


Q ss_pred             --CCCCc-----cHHHHHHHHhcCCCCcEEEEe
Q 044572          379 --PRKGL-----DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       379 --PR~Gl-----~~~v~~~l~~~~~~~~ivyvs  404 (457)
                        | .|-     +.++.+.+.+.-.+++++.+-
T Consensus       158 tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         158 TDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             CCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence              3 243     557888888766567766664

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.50  E-value=0.00095  Score=71.38  Aligned_cols=104  Identities=12%  Similarity=-0.020  Sum_probs=78.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-CCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-VGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-~~~D~vi~  376 (457)
                      .+..+||+|||.|.+.+.+|....-.-++|||+....+..|.+.++.   .+..|+.++++|+......+. ...|.|++
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~---~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i  423 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGE---QNITNFLLFPNNLDLILNDLPNNSLDGIYI  423 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH---cCCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence            46789999999999999999876656799999999999888887765   345789999988753322222 35776665


Q ss_pred             ---CC-C------CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 ---DP-P------RKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 ---DP-P------R~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                         || |      |.=+.+..++.+...-.+++.+++.
T Consensus       424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~  461 (506)
T PRK01544        424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA  461 (506)
T ss_pred             ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence               55 3      2345667888887766688888886

>PHA01634 hypothetical protein

Probab=97.50  E-value=0.00042  Score=59.22  Aligned_cols=74  Identities=15%  Similarity=0.111  Sum_probs=56.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      .+++|+|+|++.|.-+|.++. .||++|+++|.++...+..++|.+.+  +..+... ..+   ++ ...-+.||+.++|
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l-~GAK~Vva~E~~~kl~k~~een~k~n--nI~DK~v-~~~---eW-~~~Y~~~Di~~iD   99 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLL-RGASFVVQYEKEEKLRKKWEEVCAYF--NICDKAV-MKG---EW-NGEYEDVDIFVMD   99 (156)
T ss_pred             cCCEEEEecCCccchhhHHhh-cCccEEEEeccCHHHHHHHHHHhhhh--eeeecee-ecc---cc-cccCCCcceEEEE
Confidence            689999999999999999997 67999999999999999999999873  3333221 111   11 1123578999998


Q ss_pred             CC
Q 044572          378 PP  379 (457)
Q Consensus       378 PP  379 (457)
                      =-
T Consensus       100 Ce  101 (156)
T PHA01634        100 CE  101 (156)
T ss_pred             cc
Confidence            64

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.48  E-value=0.00016  Score=68.49  Aligned_cols=47  Identities=19%  Similarity=0.143  Sum_probs=44.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      ++..+||+||-+|.+++.+|+..+++.|+||||++..|..|++|++.
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~  104 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF  104 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence            56789999999999999999999999999999999999999999763

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=97.45  E-value=0.00091  Score=68.01  Aligned_cols=115  Identities=20%  Similarity=0.191  Sum_probs=84.7

Q ss_pred             CCCCeEEEEcccccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc-ccCCccEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAA-RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS-WLVGSDVL  374 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~-~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~-~~~~~D~v  374 (457)
                      .+|++|||+||--|.=+.++|.. .+-..|+|.|.+..-++..+.|+.+++   .+|....+.|..++... +..+||-|
T Consensus       240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG---v~ntiv~n~D~~ef~~~~~~~~fDRV  316 (460)
T KOG1122|consen  240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG---VTNTIVSNYDGREFPEKEFPGSFDRV  316 (460)
T ss_pred             CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC---CCceEEEccCcccccccccCccccee
Confidence            37999999999999977777754 334689999999999999999999853   46777888888765422 23479999


Q ss_pred             EECCCCCC--ccH----------------------H-HHHHHHhcCCCCcEEEEeccCCCCCchhchhhH
Q 044572          375 VVDPPRKG--LDS----------------------S-LVHALQSIGSAERKAKSLSESSSSMVKEEKRPW  419 (457)
Q Consensus       375 i~DPPR~G--l~~----------------------~-v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~  419 (457)
                      ++|-|-+|  +..                      + +..++...+..+-|||.+     |+.....+.+
T Consensus       317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST-----CSI~~~ENE~  381 (460)
T KOG1122|consen  317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST-----CSITVEENEA  381 (460)
T ss_pred             eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe-----eecchhhhHH
Confidence            99999877  211                      1 233444455677788887     8877655443

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=97.45  E-value=0.00044  Score=69.07  Aligned_cols=91  Identities=22%  Similarity=0.257  Sum_probs=64.0

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccC-CccEEEECCC
Q 044572          301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLV-GSDVLVVDPP  379 (457)
Q Consensus       301 ~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~-~~D~vi~DPP  379 (457)
                      +++|||||.|.+++-+.. .|..-|.++|+++.|++.-+.|..          ....+|+.+....... .+|+++.-||
T Consensus         2 ~~~dlFsG~Gg~~~g~~~-ag~~~~~a~e~~~~a~~~y~~N~~----------~~~~~Di~~~~~~~l~~~~D~l~ggpP   70 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQ-AGFEVVWAVEIDPDACETYKANFP----------EVICGDITEIDPSDLPKDVDLLIGGPP   70 (335)
T ss_dssp             EEEEET-TTTHHHHHHHH-TTEEEEEEEESSHHHHHHHHHHHT----------EEEESHGGGCHHHHHHHT-SEEEEE--
T ss_pred             cEEEEccCccHHHHHHHh-cCcEEEEEeecCHHHHHhhhhccc----------ccccccccccccccccccceEEEeccC
Confidence            689999999999998886 567899999999999999888852          5678898876543333 5999999999


Q ss_pred             CC-----C-----------ccHHHHHHHHhcCCCCcEEEEe
Q 044572          380 RK-----G-----------LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       380 R~-----G-----------l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      -.     |           |-.++++.+..++ | +++.++
T Consensus        71 CQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~-P-k~~~~E  109 (335)
T PF00145_consen   71 CQGFSIAGKRKGFDDPRNSLFFEFLRIVKELK-P-KYFLLE  109 (335)
T ss_dssp             -TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS---SEEEEE
T ss_pred             CceEeccccccccccccchhhHHHHHHHhhcc-c-eEEEec
Confidence            32     2           2224666777775 4 555555

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=97.41  E-value=0.00033  Score=66.01  Aligned_cols=42  Identities=26%  Similarity=0.290  Sum_probs=34.4

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK  340 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~  340 (457)
                      .+|+.|||.|||+|+.++++....  ++.+|+|++++.++.|++
T Consensus       190 ~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  190 NPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             ccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence            479999999999999999888753  589999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=97.38  E-value=0.0021  Score=59.63  Aligned_cols=100  Identities=14%  Similarity=0.069  Sum_probs=65.2

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEE-EEEccCCcCcccccCCccEEEECCC
Q 044572          301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNIS-WHNADNSIEPLSWLVGSDVLVVDPP  379 (457)
Q Consensus       301 ~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~-~~~~d~~~~~~~~~~~~D~vi~DPP  379 (457)
                      .||++|||+|.-=-..-- ....+|+++|.++.|-+.|.+.+..+   .-.++. |+.++.++...-...++|+||.-==
T Consensus        79 ~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~---k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv  154 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEK---KPLQVERFVVADGENLPQLADGSYDTVVCTLV  154 (252)
T ss_pred             ceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhc---cCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence            479999999974333332 12458999999999999999988773   335666 9999988764322367998864110


Q ss_pred             CCCc--cHHHHHHHHh-cCCCCcEEEEe
Q 044572          380 RKGL--DSSLVHALQS-IGSAERKAKSL  404 (457)
Q Consensus       380 R~Gl--~~~v~~~l~~-~~~~~~ivyvs  404 (457)
                      -...  ..+.++.+++ +++.++++++.
T Consensus       155 LCSve~~~k~L~e~~rlLRpgG~iifiE  182 (252)
T KOG4300|consen  155 LCSVEDPVKQLNEVRRLLRPGGRIIFIE  182 (252)
T ss_pred             EeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            0000  0134555554 34667777776

>PRK11524 putative methyltransferase; Provisional

Probab=97.33  E-value=0.00054  Score=67.80  Aligned_cols=57  Identities=25%  Similarity=0.213  Sum_probs=46.0

Q ss_pred             HHHHHHHHhhC-CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          286 DILLRKLQKYV-PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       286 ~~l~~~i~~~~-~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      +.|++.++... .+|+.|||.|+|||+.++.+.+.  .++.+|+|++++.++.|++-++.
T Consensus       195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence            34555555544 48999999999999999988875  35999999999999999987653

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.33  E-value=0.0017  Score=60.98  Aligned_cols=98  Identities=15%  Similarity=0.166  Sum_probs=78.2

Q ss_pred             HHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccC
Q 044572          290 RKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLV  369 (457)
Q Consensus       290 ~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~  369 (457)
                      ..+..+++.+..++|+||--|.+++.|-+...+..++++|+++..++.|.+|.+.+  +..+.++...+|....+. ...
T Consensus         8 ~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~--~l~~~i~vr~~dgl~~l~-~~d   84 (226)
T COG2384           8 TTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN--NLSERIDVRLGDGLAVLE-LED   84 (226)
T ss_pred             HHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc--CCcceEEEeccCCccccC-ccC
Confidence            45566666778899999999999999999888899999999999999999999884  456788888888865442 224


Q ss_pred             CccEEEECCCCCCccHHHHHHHHhc
Q 044572          370 GSDVLVVDPPRKGLDSSLVHALQSI  394 (457)
Q Consensus       370 ~~D~vi~DPPR~Gl~~~v~~~l~~~  394 (457)
                      .+|++++    +|+....+..+.+-
T Consensus        85 ~~d~ivI----AGMGG~lI~~ILee  105 (226)
T COG2384          85 EIDVIVI----AGMGGTLIREILEE  105 (226)
T ss_pred             CcCEEEE----eCCcHHHHHHHHHH
Confidence            6898887    78877666555543

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=97.32  E-value=0.0006  Score=68.56  Aligned_cols=68  Identities=26%  Similarity=0.281  Sum_probs=52.9

Q ss_pred             EEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCC
Q 044572          302 VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPP  379 (457)
Q Consensus       302 vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPP  379 (457)
                      |+|||||.|.+++-+-. .|+.-|.++|+++.|++..+.|...         .++.+|+.+........+|+++.-||
T Consensus         1 vidLF~G~GG~~~Gl~~-aG~~~~~a~e~~~~a~~ty~~N~~~---------~~~~~Di~~~~~~~~~~~dvl~gg~P   68 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQ-AGFKCVFASEIDKYAQKTYEANFGN---------KVPFGDITKISPSDIPDFDILLGGFP   68 (315)
T ss_pred             CEEEecCccHHHHHHHH-cCCeEEEEEeCCHHHHHHHHHhCCC---------CCCccChhhhhhhhCCCcCEEEecCC
Confidence            68999999999998875 5677788999999999998887421         33557776653322346899999999

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.24  E-value=0.00057  Score=65.22  Aligned_cols=77  Identities=25%  Similarity=0.181  Sum_probs=48.3

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH---HHHhhCCCCC----CCcEEEEEccCCcCcccccCCcc
Q 044572          300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE---KTVSRLPKSV----DGNISWHNADNSIEPLSWLVGSD  372 (457)
Q Consensus       300 ~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~---~Na~~~~~~~----~~nv~~~~~d~~~~~~~~~~~~D  372 (457)
                      .+|||+=+|-|.-++.+|.. |+ +|+++|.|+-.....+   +++.... ..    ..+++++++|..+++......||
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~-G~-~V~~lErspvia~Ll~dGL~r~~~~~-~~~~~~~~ri~l~~~d~~~~L~~~~~s~D  153 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASL-GC-KVTGLERSPVIAALLKDGLKRAQQDP-ELLAEAMRRIQLIHGDALEYLRQPDNSFD  153 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHH-T---EEEEE--HHHHHHHHHHHHHHHHST-TTHHHHHHHEEEEES-CCCHCCCHSS--S
T ss_pred             CEEEECCCcchHHHHHHHcc-CC-eEEEEECCHHHHHHHHHHHHHHHhCc-HhHHHHHhCCEEEcCCHHHHHhhcCCCCC
Confidence            48999999999999999975 54 7999999997654443   4443311 11    14799999999988763346899


Q ss_pred             EEEECCC
Q 044572          373 VLVVDPP  379 (457)
Q Consensus       373 ~vi~DPP  379 (457)
                      +|.+||-
T Consensus       154 VVY~DPM  160 (234)
T PF04445_consen  154 VVYFDPM  160 (234)
T ss_dssp             EEEE--S
T ss_pred             EEEECCC
Confidence            9999996

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.24  E-value=0.0014  Score=65.16  Aligned_cols=90  Identities=11%  Similarity=0.062  Sum_probs=68.3

Q ss_pred             HHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572          286 DILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE  363 (457)
Q Consensus       286 ~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~  363 (457)
                      ..|++.+++++.  ++..++|.=+|-|.-|..++...+..+|+|+|.++.|++.|++.++..    ..++++++++-.+.
T Consensus         6 pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~----~~R~~~i~~nF~~l   81 (305)
T TIGR00006         6 SVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF----EGRVVLIHDNFANF   81 (305)
T ss_pred             chhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc----CCcEEEEeCCHHHH
Confidence            356677777654  678999999999999999997643369999999999999999987642    35789999886654


Q ss_pred             cccc----cCCccEEEECCC
Q 044572          364 PLSW----LVGSDVLVVDPP  379 (457)
Q Consensus       364 ~~~~----~~~~D~vi~DPP  379 (457)
                      ....    ...+|.|++|--
T Consensus        82 ~~~l~~~~~~~vDgIl~DLG  101 (305)
T TIGR00006        82 FEHLDELLVTKIDGILVDLG  101 (305)
T ss_pred             HHHHHhcCCCcccEEEEecc
Confidence            2211    145899988653

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=97.20  E-value=0.00032  Score=69.43  Aligned_cols=82  Identities=24%  Similarity=0.252  Sum_probs=57.8

Q ss_pred             hCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHH-------HHHHHhhCCCCCCC-cEEEEEccCCcCccc
Q 044572          295 YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS-------FEKTVSRLPKSVDG-NISWHNADNSIEPLS  366 (457)
Q Consensus       295 ~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~-------A~~Na~~~~~~~~~-nv~~~~~d~~~~~~~  366 (457)
                      ++.+|+.|+|-|-|||.|-+.+|.- | +.|+|-||+-.++..       .+.|.+..+  ..+ -+..+.+|...-...
T Consensus       205 mv~pGdivyDPFVGTGslLvsaa~F-G-a~viGtDIDyr~vragrg~~~si~aNFkQYg--~~~~fldvl~~D~sn~~~r  280 (421)
T KOG2671|consen  205 MVKPGDIVYDPFVGTGSLLVSAAHF-G-AYVIGTDIDYRTVRAGRGEDESIKANFKQYG--SSSQFLDVLTADFSNPPLR  280 (421)
T ss_pred             ccCCCCEEecCccccCceeeehhhh-c-ceeeccccchheeecccCCCcchhHhHHHhC--CcchhhheeeecccCcchh
Confidence            4568999999999999999988864 3 499999999998873       345555432  111 134556666543222


Q ss_pred             ccCCccEEEECCCC
Q 044572          367 WLVGSDVLVVDPPR  380 (457)
Q Consensus       367 ~~~~~D~vi~DPPR  380 (457)
                      ....||.||.|||+
T Consensus       281 sn~~fDaIvcDPPY  294 (421)
T KOG2671|consen  281 SNLKFDAIVCDPPY  294 (421)
T ss_pred             hcceeeEEEeCCCc
Confidence            13469999999996

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.20  E-value=0.001  Score=63.14  Aligned_cols=53  Identities=13%  Similarity=0.109  Sum_probs=41.0

Q ss_pred             HHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHH
Q 044572          287 ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT  341 (457)
Q Consensus       287 ~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~N  341 (457)
                      .+++.+...-+....++|+|||+|-.++.+|..  .++|+|+|+|+.|++.|++.
T Consensus        22 dw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~--~k~VIatD~s~~mL~~a~k~   74 (261)
T KOG3010|consen   22 DWFKKIASRTEGHRLAWDVGTGNGQAARGIAEH--YKEVIATDVSEAMLKVAKKH   74 (261)
T ss_pred             HHHHHHHhhCCCcceEEEeccCCCcchHHHHHh--hhhheeecCCHHHHHHhhcC
Confidence            345555554333348999999999888888876  66999999999999988753

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.19  E-value=0.0013  Score=66.41  Aligned_cols=103  Identities=20%  Similarity=0.123  Sum_probs=63.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC-------CCCCcEEEEEccCCcCcc-c-c-
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK-------SVDGNISWHNADNSIEPL-S-W-  367 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~-------~~~~nv~~~~~d~~~~~~-~-~-  367 (457)
                      ++.+|||||||=|.--.-... .+.+.++|+|++.++|+.|++-.+....       ...-...|+.+|.+.... . + 
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~-~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQK-AKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHH-TT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            678999999999987666665 5688999999999999999987722100       011356789999875321 1 1 


Q ss_pred             --cCCccEEEECCCCCCccH---------HHHHHHHhcCCCCcEEEEe
Q 044572          368 --LVGSDVLVVDPPRKGLDS---------SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       368 --~~~~D~vi~DPPR~Gl~~---------~v~~~l~~~~~~~~ivyvs  404 (457)
                        ...||+|=+   ..++|.         .+++.+..+..+++++..+
T Consensus       141 ~~~~~FDvVSc---QFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT  185 (331)
T PF03291_consen  141 PRSRKFDVVSC---QFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT  185 (331)
T ss_dssp             STTS-EEEEEE---ES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccCCCcceeeh---HHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence              136898865   233332         2455555544467766665

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.19  E-value=0.0038  Score=58.27  Aligned_cols=123  Identities=17%  Similarity=0.179  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhh--CCCCEEEEEeCCHHHHHHHHHHHhhCC-----------
Q 044572          282 TRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAA--RKCRSVKCVEINKESQLSFEKTVSRLP-----------  346 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~--~~~~~V~gVE~~~~av~~A~~Na~~~~-----------  346 (457)
                      ...+..+++....++.  ..-+++|-|||+|.+--.+...  ...+.|+|-|+++++++.|++|+..+.           
T Consensus        33 VRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL  112 (246)
T PF11599_consen   33 VRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREEL  112 (246)
T ss_dssp             HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHH
Confidence            3455666677766664  3357999999999754444432  224689999999999999999965110           


Q ss_pred             ----------------------------CCCCCcEEEEEccCCcCcc----cccCCccEEEECCCCC------C--ccH-
Q 044572          347 ----------------------------KSVDGNISWHNADNSIEPL----SWLVGSDVLVVDPPRK------G--LDS-  385 (457)
Q Consensus       347 ----------------------------~~~~~nv~~~~~d~~~~~~----~~~~~~D~vi~DPPR~------G--l~~-  385 (457)
                                                  .+...-....++|+++.-.    ......|+||.|=|+.      |  -.. 
T Consensus       113 ~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p  192 (246)
T PF11599_consen  113 RELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGP  192 (246)
T ss_dssp             HHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHH
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCc
Confidence                                        0122335677788876321    1123479999999973      3  111 


Q ss_pred             --HHHHHHHhcCCCCcEEEEe
Q 044572          386 --SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       386 --~v~~~l~~~~~~~~ivyvs  404 (457)
                        .+++.|...-+...+|.|+
T Consensus       193 ~~~ml~~l~~vLp~~sVV~v~  213 (246)
T PF11599_consen  193 VAQMLNSLAPVLPERSVVAVS  213 (246)
T ss_dssp             HHHHHHHHHCCS-TT-EEEEE
T ss_pred             HHHHHHHHHhhCCCCcEEEEe
Confidence              4566666666677888885

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.14  E-value=0.0015  Score=60.41  Aligned_cols=93  Identities=23%  Similarity=0.203  Sum_probs=65.9

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCC
Q 044572          301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPR  380 (457)
Q Consensus       301 ~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR  380 (457)
                      +++|+|+|.|.=|+.+|-.....+|+.||.+..=+...+.-+..++   .+|++++++++++  ......||+|+.   |
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~---L~nv~v~~~R~E~--~~~~~~fd~v~a---R  122 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG---LSNVEVINGRAEE--PEYRESFDVVTA---R  122 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH--TTTTT-EEEEEE---E
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC---CCCEEEEEeeecc--cccCCCccEEEe---e
Confidence            8999999999999999977666789999999998888777766643   3689999999988  223468999997   6


Q ss_pred             CCcc-HHHHHHHHhcCCCCcEE
Q 044572          381 KGLD-SSLVHALQSIGSAERKA  401 (457)
Q Consensus       381 ~Gl~-~~v~~~l~~~~~~~~iv  401 (457)
                      +-.. ..+++....+-.+++.+
T Consensus       123 Av~~l~~l~~~~~~~l~~~G~~  144 (184)
T PF02527_consen  123 AVAPLDKLLELARPLLKPGGRL  144 (184)
T ss_dssp             SSSSHHHHHHHHGGGEEEEEEE
T ss_pred             hhcCHHHHHHHHHHhcCCCCEE
Confidence            5332 24555555543334433

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.12  E-value=0.00033  Score=72.51  Aligned_cols=103  Identities=18%  Similarity=0.211  Sum_probs=79.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc---cCCccE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW---LVGSDV  373 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~---~~~~D~  373 (457)
                      ++-+|||..|++|.-+|..|... +.++|++-|.++.+|+..++|++.|  +..+.++...+|+.......   ...||+
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N--~v~~ive~~~~DA~~lM~~~~~~~~~FDv  186 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELN--GVEDIVEPHHSDANVLMYEHPMVAKFFDV  186 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhc--CchhhcccccchHHHHHHhccccccccce
Confidence            57789999999999999999763 4679999999999999999999984  45566778888886543322   267999


Q ss_pred             EEECCCCCCccHHHHHH-HHhcCCCCcEEEEec
Q 044572          374 LVVDPPRKGLDSSLVHA-LQSIGSAERKAKSLS  405 (457)
Q Consensus       374 vi~DPPR~Gl~~~v~~~-l~~~~~~~~ivyvs~  405 (457)
                      |=+||  .|.....++. ++.. ..++|+++++
T Consensus       187 IDLDP--yGs~s~FLDsAvqav-~~gGLL~vT~  216 (525)
T KOG1253|consen  187 IDLDP--YGSPSPFLDSAVQAV-RDGGLLCVTC  216 (525)
T ss_pred             EecCC--CCCccHHHHHHHHHh-hcCCEEEEEe
Confidence            99999  3444445554 4445 4789999975

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.09  E-value=0.0026  Score=64.36  Aligned_cols=94  Identities=20%  Similarity=0.216  Sum_probs=68.3

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-C-CccEEEEC
Q 044572          300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-V-GSDVLVVD  377 (457)
Q Consensus       300 ~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-~-~~D~vi~D  377 (457)
                      -+++|||||.|.+.+-+.. .|+.-+.++|+++.|++.-+.|...        ..++..|+.+...+.. . .+|+++--
T Consensus         4 ~~~idLFsG~GG~~lGf~~-agf~~~~a~Eid~~a~~ty~~n~~~--------~~~~~~di~~~~~~~~~~~~~DvligG   74 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEE-AGFEIVFANEIDPPAVATYKANFPH--------GDIILGDIKELDGEALRKSDVDVLIGG   74 (328)
T ss_pred             ceEEeeccCCchHHHHHHh-cCCeEEEEEecCHHHHHHHHHhCCC--------CceeechHhhcChhhccccCCCEEEeC
Confidence            5799999999999988876 5688899999999999988887542        2566777765543322 2 68999999


Q ss_pred             CCC---------CC-------ccHHHHHHHHhcCCCCcEEEEe
Q 044572          378 PPR---------KG-------LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PPR---------~G-------l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ||-         .|       |--+.++.|..+. + .++.+.
T Consensus        75 pPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~-P-~~fv~E  115 (328)
T COG0270          75 PPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLR-P-KFFVLE  115 (328)
T ss_pred             CCCcchhhcCcccCCcCccceeeHHHHHHHHhhC-C-CEEEEe
Confidence            992         22       2235677777776 4 555554

>PRK13699 putative methylase; Provisional

Probab=97.04  E-value=0.0021  Score=61.57  Aligned_cols=56  Identities=18%  Similarity=0.219  Sum_probs=44.3

Q ss_pred             HHHHHHHh-hCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          287 ILLRKLQK-YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       287 ~l~~~i~~-~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      .|++.+++ +..+|+.|||.|||+|+.++.+.+.  .++.+|+|++++.++.|.+.++.
T Consensus       151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHH
Confidence            34444443 3447999999999999999988765  35899999999999999887764

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.95  E-value=0.0048  Score=61.94  Aligned_cols=69  Identities=22%  Similarity=0.136  Sum_probs=52.3

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .+|.++|||||++|+++-.++++ |+ +|+|||..+-+     .++.     ...+|..+.+|.+.+... ...+|+++.
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r-G~-~V~AVD~g~l~-----~~L~-----~~~~V~h~~~d~fr~~p~-~~~vDwvVc  276 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR-GM-FVTAVDNGPMA-----QSLM-----DTGQVEHLRADGFKFRPP-RKNVDWLVC  276 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc-CC-EEEEEechhcC-----Hhhh-----CCCCEEEEeccCcccCCC-CCCCCEEEE
Confidence            36899999999999999999985 44 99999955421     2222     236799999999887543 457899988


Q ss_pred             CC
Q 044572          377 DP  378 (457)
Q Consensus       377 DP  378 (457)
                      |=
T Consensus       277 Dm  278 (357)
T PRK11760        277 DM  278 (357)
T ss_pred             ec
Confidence            75

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.89  E-value=0.012  Score=56.58  Aligned_cols=65  Identities=18%  Similarity=0.163  Sum_probs=52.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      ...+|+|+|+|+|.++..+++....-+++..|. |+.++.+++   .      ++|+++.+|.++.+   .. +|++++
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~------~rv~~~~gd~f~~~---P~-~D~~~l  164 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A------DRVEFVPGDFFDPL---PV-ADVYLL  164 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T------TTEEEEES-TTTCC---SS-ESEEEE
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c------cccccccccHHhhh---cc-ccceee
Confidence            567899999999999999998877778999999 888888877   2      58999999998543   23 899988

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=96.80  E-value=0.0071  Score=59.84  Aligned_cols=130  Identities=12%  Similarity=0.086  Sum_probs=82.3

Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEccccc----HHHHHHHhhCC----CCEEEEEeCCHHHHHHHHHH
Q 044572          270 ISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAG----VIGLSLAAARK----CRSVKCVEINKESQLSFEKT  341 (457)
Q Consensus       270 ~~i~~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G----~~sl~lA~~~~----~~~V~gVE~~~~av~~A~~N  341 (457)
                      +.+..+.||-. ..+.+.|.+.+... ...-+||..+|.||    ++++.+....+    --+|+|.|+|+.+++.|++.
T Consensus        89 ltineT~FFRd-~~~f~~L~~~~~~~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G  166 (287)
T PRK10611         89 LTTNLTAFFRE-AHHFPILAEHARRR-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG  166 (287)
T ss_pred             hhCCCCCccCC-cHHHHHHHHHHHhc-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence            34556788874 56777776665432 12358999999999    46666654311    13799999999999999865


Q ss_pred             H------hh------------C-CC--C-------CCCcEEEEEccCCcCcccccCCccEEEE-------CCCCCCccHH
Q 044572          342 V------SR------------L-PK--S-------VDGNISWHNADNSIEPLSWLVGSDVLVV-------DPPRKGLDSS  386 (457)
Q Consensus       342 a------~~------------~-~~--~-------~~~nv~~~~~d~~~~~~~~~~~~D~vi~-------DPPR~Gl~~~  386 (457)
                      .      +.            . +.  +       .-..|+|.+.|+.+......+.||+|++       |++-   ...
T Consensus       167 ~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~---~~~  243 (287)
T PRK10611        167 IYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTT---QER  243 (287)
T ss_pred             CCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHH---HHH
Confidence            1      00            0 00  0       1246788888887632112367999876       4431   234


Q ss_pred             HHHHHHhcCCCCcEEEEe
Q 044572          387 LVHALQSIGSAERKAKSL  404 (457)
Q Consensus       387 v~~~l~~~~~~~~ivyvs  404 (457)
                      +++.+...-.+++++++.
T Consensus       244 vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        244 ILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             HHHHHHHHhCCCcEEEEe
Confidence            666666655688888886

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=96.73  E-value=0.0043  Score=58.64  Aligned_cols=73  Identities=21%  Similarity=0.114  Sum_probs=59.4

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCC-ccEEEE
Q 044572          299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG-SDVLVV  376 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~-~D~vi~  376 (457)
                      +.+++|+|+|.|.=|+.+|-.....+|+-||....=+...+.-.+.++   .+|++++++.++++..+  .. ||+|..
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~---L~nv~i~~~RaE~~~~~--~~~~D~vts  141 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG---LENVEIVHGRAEEFGQE--KKQYDVVTS  141 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC---CCCeEEehhhHhhcccc--cccCcEEEe
Confidence            589999999999999999854455679999999998888887766643   46899999999886532  23 999986

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.69  E-value=0.0077  Score=64.20  Aligned_cols=101  Identities=16%  Similarity=0.069  Sum_probs=68.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC----CCEEEEEeCCHHHHHHHHHHHhhCCCCCC
Q 044572          275 SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK----CRSVKCVEINKESQLSFEKTVSRLPKSVD  350 (457)
Q Consensus       275 ~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~----~~~V~gVE~~~~av~~A~~Na~~~~~~~~  350 (457)
                      +-||.. +.+.+.|+.. +.. .+..+|+|-.||+|.+-+.++...+    -...+|.|+++.....|+.|.-..   ++
T Consensus       166 GEfyTP-~~v~~liv~~-l~~-~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh---gi  239 (489)
T COG0286         166 GEFYTP-REVSELIVEL-LDP-EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH---GI  239 (489)
T ss_pred             CccCCh-HHHHHHHHHH-cCC-CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh---CC
Confidence            567753 4444444333 322 3677999999999998877776543    146999999999999999998763   22


Q ss_pred             C-cEEEEEccCCcCccc----ccCCccEEEECCCCC
Q 044572          351 G-NISWHNADNSIEPLS----WLVGSDVLVVDPPRK  381 (457)
Q Consensus       351 ~-nv~~~~~d~~~~~~~----~~~~~D~vi~DPPR~  381 (457)
                      + ++....+|...-...    ....||.|+.+||..
T Consensus       240 ~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~  275 (489)
T COG0286         240 EGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFS  275 (489)
T ss_pred             CccccccccccccCCcccccCCccceeEEEeCCCCC
Confidence            2 455666665443222    225699999999975

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=96.67  E-value=0.0036  Score=61.75  Aligned_cols=83  Identities=19%  Similarity=0.090  Sum_probs=59.9

Q ss_pred             HHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC---CCCCcEEEEEccCCcCcc-cc
Q 044572          292 LQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK---SVDGNISWHNADNSIEPL-SW  367 (457)
Q Consensus       292 i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~---~~~~nv~~~~~d~~~~~~-~~  367 (457)
                      |.++.+.++.++||+||-|+--+-.-+ ++.+.++|+||...+|++|++-.+...+   +.+-.+.|+++|.+.... ..
T Consensus       111 I~~y~~~~~~~~~LgCGKGGDLlKw~k-AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~  189 (389)
T KOG1975|consen  111 INLYTKRGDDVLDLGCGKGGDLLKWDK-AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL  189 (389)
T ss_pred             HHHHhccccccceeccCCcccHhHhhh-hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence            344556788999999999998888775 6788999999999999999976553211   112257899999886421 11


Q ss_pred             ----cCCccEEE
Q 044572          368 ----LVGSDVLV  375 (457)
Q Consensus       368 ----~~~~D~vi  375 (457)
                          ..+||+|=
T Consensus       190 ~e~~dp~fDivS  201 (389)
T KOG1975|consen  190 LEFKDPRFDIVS  201 (389)
T ss_pred             ccCCCCCcceee
Confidence                12388774

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=96.54  E-value=0.022  Score=51.24  Aligned_cols=111  Identities=14%  Similarity=0.072  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572          283 RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS  361 (457)
Q Consensus       283 ~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~  361 (457)
                      -.+++|.+.|--  +.|.-||++|-|||.|+-.+.+++ ....+++||.|++-+....+..        +.+.++.||++
T Consensus        35 ~lA~~M~s~I~p--esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~--------p~~~ii~gda~  104 (194)
T COG3963          35 ILARKMASVIDP--ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY--------PGVNIINGDAF  104 (194)
T ss_pred             HHHHHHHhccCc--ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--------CCccccccchh
Confidence            344555443221  257789999999999999888643 2467999999999998776542        23468999998


Q ss_pred             cCcccc----cCCccEEEECCCCCCccH----HHHHHHHhcCCCCcEEEE
Q 044572          362 IEPLSW----LVGSDVLVVDPPRKGLDS----SLVHALQSIGSAERKAKS  403 (457)
Q Consensus       362 ~~~~~~----~~~~D~vi~DPPR~Gl~~----~v~~~l~~~~~~~~ivyv  403 (457)
                      +.-...    ...||.||.-=|-..+..    ++++.+...-+.++-++-
T Consensus       105 ~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq  154 (194)
T COG3963         105 DLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ  154 (194)
T ss_pred             hHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence            753111    245899998777443322    345555444344544443

>PRK10458 DNA cytosine methylase; Provisional

Probab=96.52  E-value=0.013  Score=61.92  Aligned_cols=75  Identities=25%  Similarity=0.235  Sum_probs=53.3

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc-------------
Q 044572          299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL-------------  365 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~-------------  365 (457)
                      .-+++|||||.|++++-+-. .|..-|.++|+++.|.+.-+.|...     ......+.+|+.+...             
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~-aG~~~v~a~Eid~~A~~TY~~N~~~-----~p~~~~~~~DI~~i~~~~~~~~~~~~~~~  161 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEA-IGGQCVFTSEWNKHAVRTYKANWYC-----DPATHRFNEDIRDITLSHKEGVSDEEAAE  161 (467)
T ss_pred             CceEEEeCcCccHHHHHHHH-cCCEEEEEEechHHHHHHHHHHcCC-----CCccceeccChhhCccccccccchhhhhh
Confidence            34899999999999998865 5677899999999999988888521     0122334455544321             


Q ss_pred             ---cccCCccEEEECCC
Q 044572          366 ---SWLVGSDVLVVDPP  379 (457)
Q Consensus       366 ---~~~~~~D~vi~DPP  379 (457)
                         ......|+++.-||
T Consensus       162 ~~~~~~p~~DvL~gGpP  178 (467)
T PRK10458        162 HIRQHIPDHDVLLAGFP  178 (467)
T ss_pred             hhhccCCCCCEEEEcCC
Confidence               11235799999999

>PRK00536 speE spermidine synthase; Provisional

Probab=96.50  E-value=0.071  Score=52.07  Aligned_cols=99  Identities=11%  Similarity=-0.043  Sum_probs=68.3

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCC-CCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP-KSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~-~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      +.-++||=+|.|-|.....+.+..  .+|+.||++++.++.+++-..... ...+.+++++.. +   .....+.||+||
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~---~~~~~~~fDVII  144 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L---LDLDIKKYDLII  144 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h---hhccCCcCCEEE
Confidence            356899999999999999999863  499999999999999998322110 112467777752 1   111125799999


Q ss_pred             ECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          376 VDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|-.   -+++..+.+.+.-.+++++.+-
T Consensus       145 vDs~---~~~~fy~~~~~~L~~~Gi~v~Q  170 (262)
T PRK00536        145 CLQE---PDIHKIDGLKRMLKEDGVFISV  170 (262)
T ss_pred             EcCC---CChHHHHHHHHhcCCCcEEEEC
Confidence            9922   1245666666655577777764

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=96.42  E-value=0.029  Score=54.96  Aligned_cols=99  Identities=12%  Similarity=0.084  Sum_probs=68.7

Q ss_pred             CCeEEEEcccccHHHHHHHhhCC--CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccccCCccEE
Q 044572          299 GASVTDLYAGAGVIGLSLAAARK--CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDVL  374 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~--~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D~v  374 (457)
                      .-+|||+.||.|-.=+-+.....  ..+|...|.++..|+..++-++..  +..+-++|.++|+++..  ......++++
T Consensus       136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~--gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER--GLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc--CCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            45899999999987666665433  368999999999999999998874  33344599999999852  2223457888


Q ss_pred             EECCCCCCccH-----HH----HHHHHh-cCCCCcEEEE
Q 044572          375 VVDPPRKGLDS-----SL----VHALQS-IGSAERKAKS  403 (457)
Q Consensus       375 i~DPPR~Gl~~-----~v----~~~l~~-~~~~~~ivyv  403 (457)
                      |+    +|+-.     ++    ++.+.. +.+.+.+||.
T Consensus       214 iV----sGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT  248 (311)
T PF12147_consen  214 IV----SGLYELFPDNDLVRRSLAGLARALEPGGYLIYT  248 (311)
T ss_pred             EE----ecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence            76    45422     32    233333 4556677776

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.27  E-value=0.083  Score=49.96  Aligned_cols=102  Identities=15%  Similarity=-0.008  Sum_probs=67.7

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--cccCCccE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSDV  373 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~~~~~D~  373 (457)
                      .+|.+||-||+.+|+.--+++...+ -+.|+|||.++...++.-.=++.     -.|+--+-+|+..-..  .+.+..|+
T Consensus        72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-----R~NIiPIl~DAr~P~~Y~~lv~~VDv  146 (229)
T PF01269_consen   72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-----RPNIIPILEDARHPEKYRMLVEMVDV  146 (229)
T ss_dssp             -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----STTEEEEES-TTSGGGGTTTS--EEE
T ss_pred             CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-----CCceeeeeccCCChHHhhcccccccE
Confidence            4799999999999999999998765 56999999999887776655544     2578889999874211  12357899


Q ss_pred             EEECCCCCCccHHHHHHHH-hcCCCCcEEEEe
Q 044572          374 LVVDPPRKGLDSSLVHALQ-SIGSAERKAKSL  404 (457)
Q Consensus       374 vi~DPPR~Gl~~~v~~~l~-~~~~~~~ivyvs  404 (457)
                      |+.|=...+-..-+..... -++ .++.+.++
T Consensus       147 I~~DVaQp~Qa~I~~~Na~~fLk-~gG~~~i~  177 (229)
T PF01269_consen  147 IFQDVAQPDQARIAALNARHFLK-PGGHLIIS  177 (229)
T ss_dssp             EEEE-SSTTHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             EEecCCChHHHHHHHHHHHhhcc-CCcEEEEE
Confidence            9999876554443333332 344 45544443

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=96.23  E-value=0.013  Score=55.85  Aligned_cols=98  Identities=11%  Similarity=0.060  Sum_probs=65.1

Q ss_pred             eEEEEcccccHHHHHHHhhCCC--CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc-cc--ccCCccEEE
Q 044572          301 SVTDLYAGAGVIGLSLAAARKC--RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP-LS--WLVGSDVLV  375 (457)
Q Consensus       301 ~vLDl~cG~G~~sl~lA~~~~~--~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~-~~--~~~~~D~vi  375 (457)
                      +||++|||+|....++.+...-  -+|++.|-|+.|++..++|.+-+    .+++.....|+...- ..  ..+.+|+|+
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----e~~~~afv~Dlt~~~~~~~~~~~svD~it  149 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----ESRVEAFVWDLTSPSLKEPPEEGSVDIIT  149 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----hhhhcccceeccchhccCCCCcCccceEE
Confidence            7999999999999999874332  47999999999999999987652    234444444543211 10  124577543


Q ss_pred             E------CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          376 V------DPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~------DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +      =+|-+  ...+++.+.++..|++.++..
T Consensus       150 ~IFvLSAi~pek--~~~a~~nl~~llKPGG~llfr  182 (264)
T KOG2361|consen  150 LIFVLSAIHPEK--MQSVIKNLRTLLKPGGSLLFR  182 (264)
T ss_pred             EEEEEeccChHH--HHHHHHHHHHHhCCCcEEEEe
Confidence            3      23322  234677777776688888874

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.16  E-value=0.042  Score=55.49  Aligned_cols=112  Identities=24%  Similarity=0.229  Sum_probs=74.9

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCC----EEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc----c
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCR----SVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS----W  367 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~----~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~----~  367 (457)
                      +.+|++|||+|+--|.=++.+.......    .|++-|.++.=+....+.++...   ..+..+...|+..+...    +
T Consensus       153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~---~~~~~v~~~~~~~~p~~~~~~~  229 (375)
T KOG2198|consen  153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP---SPNLLVTNHDASLFPNIYLKDG  229 (375)
T ss_pred             cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC---CcceeeecccceeccccccccC
Confidence            4589999999999998775555433223    89999999988887777665532   34555556665443211    1


Q ss_pred             ----cCCccEEEECCCCC----------------------CccH----HHHHHHHhcCCCCcEEEEeccCCCCCchhc
Q 044572          368 ----LVGSDVLVVDPPRK----------------------GLDS----SLVHALQSIGSAERKAKSLSESSSSMVKEE  415 (457)
Q Consensus       368 ----~~~~D~vi~DPPR~----------------------Gl~~----~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~  415 (457)
                          ...||-|++|=|-+                      ||+.    -+...++.++.++++||.+     |+....
T Consensus       230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST-----CSLnpi  302 (375)
T KOG2198|consen  230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST-----CSLNPI  302 (375)
T ss_pred             chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec-----cCCCch
Confidence                13699999999943                      2222    1344566677899999997     776543

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.06  E-value=0.037  Score=53.26  Aligned_cols=117  Identities=15%  Similarity=0.116  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572          285 FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP  364 (457)
Q Consensus       285 ~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~  364 (457)
                      .+.+|+.+...+....+|+|++||.=-+++..-.......++|+||+..+++...+-...++    -+.++...|.....
T Consensus        92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~----~~~~~~v~Dl~~~~  167 (251)
T PF07091_consen   92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG----VPHDARVRDLLSDP  167 (251)
T ss_dssp             HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-----CEEEEEE-TTTSH
T ss_pred             HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC----CCcceeEeeeeccC
Confidence            46777888777766789999999999999988754433589999999999999988777642    34566666765542


Q ss_pred             ccccCCccEEEE--CCC-----CCCccHHHHHHHHhcCCCCcEEEEeccCCCCCc
Q 044572          365 LSWLVGSDVLVV--DPP-----RKGLDSSLVHALQSIGSAERKAKSLSESSSSMV  412 (457)
Q Consensus       365 ~~~~~~~D~vi~--DPP-----R~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~  412 (457)
                      .  ....|+.++  =-|     +.|..   .+.|..+.  ...+.||-...+-+.
T Consensus       168 ~--~~~~DlaLllK~lp~le~q~~g~g---~~ll~~~~--~~~~vVSfPtrSL~g  215 (251)
T PF07091_consen  168 P--KEPADLALLLKTLPCLERQRRGAG---LELLDALR--SPHVVVSFPTRSLGG  215 (251)
T ss_dssp             T--TSEESEEEEET-HHHHHHHSTTHH---HHHHHHSC--ESEEEEEEES-----
T ss_pred             C--CCCcchhhHHHHHHHHHHHhcchH---HHHHHHhC--CCeEEEecccccccc
Confidence            2  234676655  112     34433   33344443  455666645555444

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=96.04  E-value=0.078  Score=51.29  Aligned_cols=105  Identities=21%  Similarity=0.163  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHh-hCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEc
Q 044572          282 TRAFDILLRKLQK-YVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA  358 (457)
Q Consensus       282 ~~~~~~l~~~i~~-~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~  358 (457)
                      .+|..+|+..-.. +-.  ...++||+|+|.|..+..+|..  +++|++-|.|+.|....++   +       ..+.+  
T Consensus        75 ~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~--f~~v~aTE~S~~Mr~rL~~---k-------g~~vl--  140 (265)
T PF05219_consen   75 EEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPL--FKEVYATEASPPMRWRLSK---K-------GFTVL--  140 (265)
T ss_pred             HHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhh--cceEEeecCCHHHHHHHHh---C-------CCeEE--
Confidence            6777777764321 111  3568999999999999999976  5699999999999654432   1       12223  


Q ss_pred             cCCcCcccccCCccEEEE----CCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          359 DNSIEPLSWLVGSDVLVV----DPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       359 d~~~~~~~~~~~~D~vi~----DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      |..++ .+...+||+|.+    |  |..-...+++.+...-.+.+++.+
T Consensus       141 ~~~~w-~~~~~~fDvIscLNvLD--Rc~~P~~LL~~i~~~l~p~G~lil  186 (265)
T PF05219_consen  141 DIDDW-QQTDFKFDVISCLNVLD--RCDRPLTLLRDIRRALKPNGRLIL  186 (265)
T ss_pred             ehhhh-hccCCceEEEeehhhhh--ccCCHHHHHHHHHHHhCCCCEEEE
Confidence            22222 111246998854    3  222233566666654335555544

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=95.97  E-value=0.037  Score=53.68  Aligned_cols=117  Identities=16%  Similarity=0.130  Sum_probs=79.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc-ccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS-WLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~-~~~~~D~vi~  376 (457)
                      .|+.|+=+| ---.+|+++|..+.+++|..|||++..++..++-++..+   .+|++.+.-|+..-+.+ +..+||+.+.
T Consensus       152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g---~~~ie~~~~Dlr~plpe~~~~kFDvfiT  227 (354)
T COG1568         152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG---YNNIEAFVFDLRNPLPEDLKRKFDVFIT  227 (354)
T ss_pred             CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC---ccchhheeehhcccChHHHHhhCCeeec
Confidence            477788777 666788888887778999999999999999999998853   45788888888775544 3478999999


Q ss_pred             CCCCC--CccHHHHHHHHhcCCC--CcEEEEeccCCCCCchhchhhHHHHHH
Q 044572          377 DPPRK--GLDSSLVHALQSIGSA--ERKAKSLSESSSSMVKEEKRPWILRAK  424 (457)
Q Consensus       377 DPPR~--Gl~~~v~~~l~~~~~~--~~ivyvs~~~~~c~~~~~~~~~~~~~~  424 (457)
                      |||..  |+.-=+-..+..++..  .+..+++      -.+.+.+.|.+.-+
T Consensus       228 DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT------~ressidkW~eiQr  273 (354)
T COG1568         228 DPPETIKALKLFLGRGIATLKGEGCAGYFGIT------RRESSIDKWREIQR  273 (354)
T ss_pred             CchhhHHHHHHHHhccHHHhcCCCccceEeee------eccccHHHHHHHHH
Confidence            99953  2221112223334422  3566664      22344555655544

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=95.92  E-value=0.012  Score=60.15  Aligned_cols=58  Identities=19%  Similarity=0.201  Sum_probs=48.6

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572          301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS  361 (457)
Q Consensus       301 ~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~  361 (457)
                      .|||+|.|||.+++.+++ .|+.+|+|+|.-+.|++.|++-..++  +..++|..|.-.-.
T Consensus        69 ~vLdigtGTGLLSmMAvr-agaD~vtA~EvfkPM~d~arkI~~kn--g~SdkI~vInkrSt  126 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVR-AGADSVTACEVFKPMVDLARKIMHKN--GMSDKINVINKRST  126 (636)
T ss_pred             EEEEccCCccHHHHHHHH-hcCCeEEeehhhchHHHHHHHHHhcC--CCccceeeeccccc
Confidence            589999999999999886 56899999999999999999887764  45678888765443

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.72  E-value=0.026  Score=49.73  Aligned_cols=78  Identities=21%  Similarity=0.113  Sum_probs=58.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572          281 NTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN  360 (457)
Q Consensus       281 n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~  360 (457)
                      .++|.+.+++.+..  .+..+.+|||+|-|-+-+.+|+. +....+|||.|+..+..++-.+-+.  +....+.|..-|.
T Consensus        57 tteQv~nVLSll~~--n~~GklvDlGSGDGRiVlaaar~-g~~~a~GvELNpwLVaysrl~a~R~--g~~k~trf~Rkdl  131 (199)
T KOG4058|consen   57 TTEQVENVLSLLRG--NPKGKLVDLGSGDGRIVLAAARC-GLRPAVGVELNPWLVAYSRLHAWRA--GCAKSTRFRRKDL  131 (199)
T ss_pred             cHHHHHHHHHHccC--CCCCcEEeccCCCceeehhhhhh-CCCcCCceeccHHHHHHHHHHHHHH--hcccchhhhhhhh
Confidence            35666655554333  24468999999999999998874 4678999999999999998776542  3445678888888


Q ss_pred             CcC
Q 044572          361 SIE  363 (457)
Q Consensus       361 ~~~  363 (457)
                      .+.
T Consensus       132 wK~  134 (199)
T KOG4058|consen  132 WKV  134 (199)
T ss_pred             hhc
Confidence            765

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=95.69  E-value=0.043  Score=49.41  Aligned_cols=75  Identities=15%  Similarity=0.119  Sum_probs=47.5

Q ss_pred             EEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCcc-----HHHHHHHHhcCCCCcE
Q 044572          326 KCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLD-----SSLVHALQSIGSAERK  400 (457)
Q Consensus       326 ~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~-----~~v~~~l~~~~~~~~i  400 (457)
                      +|||+|++|++.|+++.+....+...+++|+++|+.+... ..+.||+|++.   .++.     .++++.+.+.-++++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~v~~~---~~l~~~~d~~~~l~ei~rvLkpGG~   76 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF-DDCEFDAVTMG---YGLRNVVDRLRAMKEMYRVLKPGSR   76 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC-CCCCeeEEEec---chhhcCCCHHHHHHHHHHHcCcCeE
Confidence            4899999999999877653211223579999999987542 23579998763   2221     2345555544446655


Q ss_pred             EEEe
Q 044572          401 AKSL  404 (457)
Q Consensus       401 vyvs  404 (457)
                      +++.
T Consensus        77 l~i~   80 (160)
T PLN02232         77 VSIL   80 (160)
T ss_pred             EEEE
Confidence            5543

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.60  E-value=0.051  Score=53.52  Aligned_cols=64  Identities=20%  Similarity=0.211  Sum_probs=45.6

Q ss_pred             CHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhh
Q 044572          281 NTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       281 n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      |..+...++..+...++  .-.+|||+|||.|+-...+....+ ..++++||.|+.|++.++.=++.
T Consensus        14 ~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~   80 (274)
T PF09243_consen   14 TYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA   80 (274)
T ss_pred             HHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence            44455555565554433  346899999999987666554332 56899999999999998876554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=95.56  E-value=0.0091  Score=54.73  Aligned_cols=79  Identities=22%  Similarity=0.143  Sum_probs=50.2

Q ss_pred             HHHHHHHHhh--CC--CCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572          286 DILLRKLQKY--VP--YGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN  360 (457)
Q Consensus       286 ~~l~~~i~~~--~~--~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~  360 (457)
                      -+|++...++  +.  ++.+||||||+.|+++-.+..+. ...+|+|||+.+..         .     ..++.++++|.
T Consensus         7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------~-----~~~~~~i~~d~   72 (181)
T PF01728_consen    7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------P-----LQNVSFIQGDI   72 (181)
T ss_dssp             HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------S------TTEEBTTGGG
T ss_pred             HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------c-----ccceeeeeccc
Confidence            3555544443  23  34899999999999999999864 14699999998871         1     13456667776


Q ss_pred             CcC-----ccccc----CCccEEEECC
Q 044572          361 SIE-----PLSWL----VGSDVLVVDP  378 (457)
Q Consensus       361 ~~~-----~~~~~----~~~D~vi~DP  378 (457)
                      .+.     +....    ..+|+|+.|=
T Consensus        73 ~~~~~~~~i~~~~~~~~~~~dlv~~D~   99 (181)
T PF01728_consen   73 TNPENIKDIRKLLPESGEKFDLVLSDM   99 (181)
T ss_dssp             EEEEHSHHGGGSHGTTTCSESEEEE--
T ss_pred             chhhHHHhhhhhccccccCcceecccc
Confidence            432     11111    4799999997

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=95.42  E-value=0.005  Score=51.20  Aligned_cols=74  Identities=14%  Similarity=0.096  Sum_probs=27.6

Q ss_pred             EEEcccccHHHHHHHhhCC-C--CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-CCccEEEECC
Q 044572          303 TDLYAGAGVIGLSLAAARK-C--RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-VGSDVLVVDP  378 (457)
Q Consensus       303 LDl~cG~G~~sl~lA~~~~-~--~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-~~~D~vi~DP  378 (457)
                      |++|+..|..++.+++... .  .++++||..+. .+.++++++..  +..+++++++++..+.+..+. ..+|++++|=
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~--~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg   77 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA--GLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG   77 (106)
T ss_dssp             --------------------------EEEESS-------------G--GG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc--CCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence            6889889988888775322 1  37999999996 33334444331  233579999999987766554 6899999997


Q ss_pred             C
Q 044572          379 P  379 (457)
Q Consensus       379 P  379 (457)
                      .
T Consensus        78 ~   78 (106)
T PF13578_consen   78 D   78 (106)
T ss_dssp             -
T ss_pred             C
Confidence            6

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.40  E-value=0.019  Score=57.22  Aligned_cols=89  Identities=12%  Similarity=0.115  Sum_probs=61.1

Q ss_pred             HHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572          287 ILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP  364 (457)
Q Consensus       287 ~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~  364 (457)
                      .|++.+++++.  ++..++|+=-|.|+-+..+.......+|+|+|.+++|++.|+++++.    ..+++.+++++-.+..
T Consensus         7 Vll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~----~~~r~~~~~~~F~~l~   82 (310)
T PF01795_consen    7 VLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK----FDDRFIFIHGNFSNLD   82 (310)
T ss_dssp             TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC----CCTTEEEEES-GGGHH
T ss_pred             ccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh----ccceEEEEeccHHHHH
Confidence            45666666653  67899999999999999998754457999999999999999887654    2468999998865432


Q ss_pred             c---cc--cCCccEEEECCC
Q 044572          365 L---SW--LVGSDVLVVDPP  379 (457)
Q Consensus       365 ~---~~--~~~~D~vi~DPP  379 (457)
                      .   ..  ...+|-|++|--
T Consensus        83 ~~l~~~~~~~~~dgiL~DLG  102 (310)
T PF01795_consen   83 EYLKELNGINKVDGILFDLG  102 (310)
T ss_dssp             HHHHHTTTTS-EEEEEEE-S
T ss_pred             HHHHHccCCCccCEEEEccc
Confidence            1   11  246899999764

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.22  E-value=0.1  Score=49.79  Aligned_cols=103  Identities=17%  Similarity=0.158  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHhh-C-CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEE-Ecc
Q 044572          283 RAFDILLRKLQKY-V-PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH-NAD  359 (457)
Q Consensus       283 ~~~~~l~~~i~~~-~-~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~-~~d  359 (457)
                      ....+|...+..+ + .+|..+||+|+-||.|+..+.. .||++|+|||..-.-+..   .++.     ..++..+ ..|
T Consensus        62 RG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq-~gAk~VyavDVG~~Ql~~---kLR~-----d~rV~~~E~tN  132 (245)
T COG1189          62 RGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQ-RGAKHVYAVDVGYGQLHW---KLRN-----DPRVIVLERTN  132 (245)
T ss_pred             cHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHH-cCCcEEEEEEccCCccCH---hHhc-----CCcEEEEecCC
Confidence            3445555544332 1 2789999999999999999997 578999999997655433   2221     2344433 333


Q ss_pred             CCcCcc-cccCCccEEEECCCCCCccHHHHHHHHhcC
Q 044572          360 NSIEPL-SWLVGSDVLVVDPPRKGLDSSLVHALQSIG  395 (457)
Q Consensus       360 ~~~~~~-~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~  395 (457)
                      +...-. .+.+..|++++|=.-.-+.. ++-.+..+.
T Consensus       133 ~r~l~~~~~~~~~d~~v~DvSFISL~~-iLp~l~~l~  168 (245)
T COG1189         133 VRYLTPEDFTEKPDLIVIDVSFISLKL-ILPALLLLL  168 (245)
T ss_pred             hhhCCHHHcccCCCeEEEEeehhhHHH-HHHHHHHhc
Confidence            332221 12246789999987655543 555555544

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.02  E-value=0.62  Score=43.68  Aligned_cols=71  Identities=21%  Similarity=0.099  Sum_probs=53.1

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--c---cc-
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--S---WL-  368 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~---~~-  368 (457)
                      +.++..|+||||--|..+..+++..+. ..|+|||+.|-.              ...+|.++++|......  +   .. 
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------------~~~~V~~iq~d~~~~~~~~~l~~~l~  108 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------------PIPGVIFLQGDITDEDTLEKLLEALG  108 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence            457899999999999999999987553 349999998753              23468999999875321  1   11 


Q ss_pred             C-CccEEEECCCC
Q 044572          369 V-GSDVLVVDPPR  380 (457)
Q Consensus       369 ~-~~D~vi~DPPR  380 (457)
                      . .+|+|+.|+-+
T Consensus       109 ~~~~DvV~sD~ap  121 (205)
T COG0293         109 GAPVDVVLSDMAP  121 (205)
T ss_pred             CCCcceEEecCCC
Confidence            2 36999988854

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.01  E-value=0.61  Score=43.53  Aligned_cols=112  Identities=14%  Similarity=0.011  Sum_probs=74.9

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--cccCCccEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSDVL  374 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~~~~~D~v  374 (457)
                      .+|++||=||+-+|+..-+.+...+...|+|||.++......-.-++.     -.|+--+-+||..-..  .+.+..|+|
T Consensus        75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-----R~Ni~PIL~DA~~P~~Y~~~Ve~VDvi  149 (231)
T COG1889          75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-----RPNIIPILEDARKPEKYRHLVEKVDVI  149 (231)
T ss_pred             CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-----CCCceeeecccCCcHHhhhhcccccEE
Confidence            479999999999999999999887767899999999988766655544     2477888899865211  123678999


Q ss_pred             EECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCch
Q 044572          375 VVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVK  413 (457)
Q Consensus       375 i~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~  413 (457)
                      +.|=-..+-..-+........+.++-+.++-.+++.+..
T Consensus       150 y~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT  188 (231)
T COG1889         150 YQDVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVT  188 (231)
T ss_pred             EEecCCchHHHHHHHHHHHhcccCCeEEEEEEeeccccc
Confidence            999875443333333333333345544443344444433

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.73  E-value=0.048  Score=48.88  Aligned_cols=127  Identities=17%  Similarity=0.042  Sum_probs=72.7

Q ss_pred             CCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc-cccCCccEEE
Q 044572          298 YGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL-SWLVGSDVLV  375 (457)
Q Consensus       298 ~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~-~~~~~~D~vi  375 (457)
                      .|.+||+||.| +|.-|+.+|..+...+|..-|.++++|+..++-...|.....+.+..+.-+....-. +....||+|+
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            47889999998 466778888777778999999999999988876544211222333222222211111 1123699887


Q ss_pred             ECCCC--CCccHHHHHHHHhcC-CCCcEEEEeccCCCCCchhchhhHHHHHHHhccc
Q 044572          376 VDPPR--KGLDSSLVHALQSIG-SAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ  429 (457)
Q Consensus       376 ~DPPR--~Gl~~~v~~~l~~~~-~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~  429 (457)
                      .----  ...+..+++.|..+- +.++.++.|     =--...++.|.+.+...+-.
T Consensus       109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~fs-----PRRg~sL~kF~de~~~~gf~  160 (201)
T KOG3201|consen  109 AADCLFFDEHHESLVDTIKSLLRPSGRALLFS-----PRRGQSLQKFLDEVGTVGFT  160 (201)
T ss_pred             eccchhHHHHHHHHHHHHHHHhCcccceeEec-----CcccchHHHHHHHHHhceeE
Confidence            52221  112345566665543 334444443     11224567777776666533

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=94.62  E-value=0.09  Score=49.62  Aligned_cols=139  Identities=15%  Similarity=0.023  Sum_probs=77.2

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECC
Q 044572          299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDP  378 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DP  378 (457)
                      ..+.||+|||.|-+|-.+... -+.+|..||-++..++.|++.+..   +...-.++++.-+.++.+. ..+||+|.+-=
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~-~f~~VDlVEp~~~Fl~~a~~~l~~---~~~~v~~~~~~gLQ~f~P~-~~~YDlIW~QW  130 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLP-VFDEVDLVEPVEKFLEQAKEYLGK---DNPRVGEFYCVGLQDFTPE-EGKYDLIWIQW  130 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCC-C-SEEEEEES-HHHHHHHHHHTCC---GGCCEEEEEES-GGG-----TT-EEEEEEES
T ss_pred             cceEEecccccchhHHHHHHH-hcCEeEEeccCHHHHHHHHHHhcc---cCCCcceEEecCHhhccCC-CCcEeEEEehH
Confidence            468999999999999876543 378999999999999999976543   1123357888887776543 35799997621


Q ss_pred             CCCCc-cHHHHHHHHhcC---CCCcEEEEeccCCCCCch-----------hchhhHHHHHHHhccccccccCCCCCCCCC
Q 044572          379 PRKGL-DSSLVHALQSIG---SAERKAKSLSESSSSMVK-----------EEKRPWILRAKEASVQIGSKTNSENQSLPQ  443 (457)
Q Consensus       379 PR~Gl-~~~v~~~l~~~~---~~~~ivyvs~~~~~c~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  443 (457)
                      =-.=| +.++++.|.+++   .++++|.+- +.-+....           -..+.|..+..+++-++....  ...++|.
T Consensus       131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvK-EN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~--~Q~~fP~  207 (218)
T PF05891_consen  131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVK-ENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE--KQKGFPK  207 (218)
T ss_dssp             -GGGS-HHHHHHHHHHHHHHEEEEEEEEEE-EEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE--E-TT--T
T ss_pred             hhccCCHHHHHHHHHHHHHhCcCCcEEEEE-ecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec--cccCCCc
Confidence            11111 346777776653   356666662 22111111           124567777777766553211  2345555


Q ss_pred             ce
Q 044572          444 TL  445 (457)
Q Consensus       444 ~~  445 (457)
                      .|
T Consensus       208 ~L  209 (218)
T PF05891_consen  208 EL  209 (218)
T ss_dssp             TS
T ss_pred             cc
Confidence            43

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.35  E-value=0.14  Score=47.86  Aligned_cols=125  Identities=10%  Similarity=0.039  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHHHHH-hhCC-----CCCeEEEEccccc----HHHHHHHhh--CCC---CEEEEEeCCHHHHHHHH
Q 044572          275 SSFGQANTRAFDILLRKLQ-KYVP-----YGASVTDLYAGAG----VIGLSLAAA--RKC---RSVKCVEINKESQLSFE  339 (457)
Q Consensus       275 ~~FfQ~n~~~~~~l~~~i~-~~~~-----~~~~vLDl~cG~G----~~sl~lA~~--~~~---~~V~gVE~~~~av~~A~  339 (457)
                      +.||. +.++.+.|.+.+. ..+.     ..-+||.+||++|    ++++.+...  ...   -+|+|.|+|+.+++.|+
T Consensus         3 T~FFR-d~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar   81 (196)
T PF01739_consen    3 TYFFR-DPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKAR   81 (196)
T ss_dssp             --TTT-TTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHH
T ss_pred             CcccC-CHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHH
Confidence            45666 5678888888887 3332     2347999999999    466666551  112   28999999999999997


Q ss_pred             HH------Hh-------------hCCCC------CCCcEEEEEccCCcCcccccCCccEEEECCCCCCc-------cHHH
Q 044572          340 KT------VS-------------RLPKS------VDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGL-------DSSL  387 (457)
Q Consensus       340 ~N------a~-------------~~~~~------~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl-------~~~v  387 (457)
                      +-      ++             ..+..      .-++|+|...|+.+ .....+.||+|++   |.-+       ...+
T Consensus        82 ~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~C---RNVlIYF~~~~~~~v  157 (196)
T PF01739_consen   82 AGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFC---RNVLIYFDPETQQRV  157 (196)
T ss_dssp             HTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE----SSGGGS-HHHHHHH
T ss_pred             hCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEe---cCEEEEeCHHHHHHH
Confidence            52      10             00000      11368888888877 2223467999987   3221       2345


Q ss_pred             HHHHHhcCCCCcEEEEe
Q 044572          388 VHALQSIGSAERKAKSL  404 (457)
Q Consensus       388 ~~~l~~~~~~~~ivyvs  404 (457)
                      ++.+...-.+++.+++.
T Consensus       158 l~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  158 LRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             HHHHGGGEEEEEEEEE-
T ss_pred             HHHHHHHcCCCCEEEEe
Confidence            66665554588888886

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=94.30  E-value=0.89  Score=37.96  Aligned_cols=99  Identities=16%  Similarity=0.072  Sum_probs=55.4

Q ss_pred             EEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc--CCccEEEECC
Q 044572          302 VTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL--VGSDVLVVDP  378 (457)
Q Consensus       302 vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~--~~~D~vi~DP  378 (457)
                      ++|++||+|... .++..... ..++++|.++.++..++..... . . ..++.++.+|.........  ..+|++....
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  127 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A-G-LGLVDFVVADALGGVLPFEDSASFDLVISLL  127 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c-C-CCceEEEEeccccCCCCCCCCCceeEEeeee
Confidence            999999999976 33332221 3799999999999985544322 1 1 1116788888765211122  2688874444


Q ss_pred             CCCCc-cHHHHHHHHhcCCCCcEEEEe
Q 044572          379 PRKGL-DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       379 PR~Gl-~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ..... ...++..+.....+++.+.++
T Consensus       128 ~~~~~~~~~~~~~~~~~l~~~g~~~~~  154 (257)
T COG0500         128 VLHLLPPAKALRELLRVLKPGGRLVLS  154 (257)
T ss_pred             ehhcCCHHHHHHHHHHhcCCCcEEEEE
Confidence            32211 133444444433345544443

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=94.23  E-value=0.23  Score=46.54  Aligned_cols=88  Identities=19%  Similarity=0.248  Sum_probs=58.6

Q ss_pred             HHHHHHHHhhCCCCC-eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcE-EEEEccCCcC
Q 044572          286 DILLRKLQKYVPYGA-SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNI-SWHNADNSIE  363 (457)
Q Consensus       286 ~~l~~~i~~~~~~~~-~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv-~~~~~d~~~~  363 (457)
                      +-+++.+.+++.... +||+++||||--+.++|+...--.-.--|.++......+..+...+   ..|+ .-+..|+.+.
T Consensus        12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~---~~Nv~~P~~lDv~~~   88 (204)
T PF06080_consen   12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAG---LPNVRPPLALDVSAP   88 (204)
T ss_pred             hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcC---CcccCCCeEeecCCC
Confidence            455566666666445 5999999999999999987665567788999988777776665532   2332 2455666654


Q ss_pred             cccc-------cCCccEEEE
Q 044572          364 PLSW-------LVGSDVLVV  376 (457)
Q Consensus       364 ~~~~-------~~~~D~vi~  376 (457)
                      ...+       ...||.|+.
T Consensus        89 ~w~~~~~~~~~~~~~D~i~~  108 (204)
T PF06080_consen   89 PWPWELPAPLSPESFDAIFC  108 (204)
T ss_pred             CCccccccccCCCCcceeee
Confidence            2222       236888765

The function of this family is unknown.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=94.21  E-value=0.38  Score=48.46  Aligned_cols=86  Identities=8%  Similarity=0.009  Sum_probs=54.0

Q ss_pred             CCCCCCCHHH--HHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHh-h---CCCCEEEEEeCCHHHHHHHHHHHhhCCCC
Q 044572          275 SSFGQANTRA--FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAA-A---RKCRSVKCVEINKESQLSFEKTVSRLPKS  348 (457)
Q Consensus       275 ~~FfQ~n~~~--~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~-~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~  348 (457)
                      ..|++.+.+.  .+.-...|...+.++..++|||||+|.=+-.|.. .   ......++||+|.++++.+.+++..   .
T Consensus        51 pEYYptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~---~  127 (319)
T TIGR03439        51 PEYYLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL---G  127 (319)
T ss_pred             CccCChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh---c
Confidence            3566665542  1222233444455677999999999985433322 1   1234689999999999999998872   1


Q ss_pred             CCCcE--EEEEccCCcC
Q 044572          349 VDGNI--SWHNADNSIE  363 (457)
Q Consensus       349 ~~~nv--~~~~~d~~~~  363 (457)
                      ....+  .-++||-.+.
T Consensus       128 ~~p~l~v~~l~gdy~~~  144 (319)
T TIGR03439       128 NFSHVRCAGLLGTYDDG  144 (319)
T ss_pred             cCCCeEEEEEEecHHHH
Confidence            12334  4478886553

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=94.12  E-value=0.7  Score=45.48  Aligned_cols=101  Identities=16%  Similarity=0.136  Sum_probs=56.4

Q ss_pred             CeEEEEccccc-HHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          300 ASVTDLYAGAG-VIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       300 ~~vLDl~cG~G-~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      .+|+=+|||.= ..++.+|+..+ ...|+++|++++|++.+++=.+.. .+...+++|+++|+.+.... ...||+|++-
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-~~L~~~m~f~~~d~~~~~~d-l~~~DvV~lA  199 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-LGLSKRMSFITADVLDVTYD-LKEYDVVFLA  199 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----HH-SSEEEEES-GGGG-GG-----SEEEE-
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-ccccCCeEEEecchhccccc-cccCCEEEEh
Confidence            48998888844 55666765422 347999999999999998765511 12346799999998765433 3589999884


Q ss_pred             CCCCC----ccHHHHHHHHhcCCCCcEEEE
Q 044572          378 PPRKG----LDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       378 PPR~G----l~~~v~~~l~~~~~~~~ivyv  403 (457)
                      -= .|    -..++++.|.+.-+++.++.+
T Consensus       200 al-Vg~~~e~K~~Il~~l~~~m~~ga~l~~  228 (276)
T PF03059_consen  200 AL-VGMDAEPKEEILEHLAKHMAPGARLVV  228 (276)
T ss_dssp             TT--S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred             hh-cccccchHHHHHHHHHhhCCCCcEEEE
Confidence            32 23    334678888664334444443

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=93.84  E-value=1.1  Score=42.96  Aligned_cols=133  Identities=13%  Similarity=0.185  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572          282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS  361 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~  361 (457)
                      .+..+..++.|..+- .+.+ |+.|+||=-++-.+.+.  ..++.+.|..++=....+.|...     ..+++..++|-+
T Consensus        74 pa~l~~yl~~i~~lN-~~~~-l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~~-----d~~vrv~~~DG~  144 (279)
T COG2961          74 PAELEPYLDAVRQLN-PGGG-LRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFAG-----DRRVRVLRGDGF  144 (279)
T ss_pred             hHHHHHHHHHHHHhC-CCCC-cccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhCC-----CcceEEEecCcH
Confidence            566677777777653 3444 99999999999888753  57999999999988888887653     468999999987


Q ss_pred             cCccccc---CCccEEEECCCCCCcc--HHHHHHHH----hcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhcc
Q 044572          362 IEPLSWL---VGSDVLVVDPPRKGLD--SSLVHALQ----SIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASV  428 (457)
Q Consensus       362 ~~~~~~~---~~~D~vi~DPPR~Gl~--~~v~~~l~----~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~  428 (457)
                      ..+...+   ++=.+|++|||..--+  ..+++.|.    +....--.++.=     |.-....+.|...+.....
T Consensus       145 ~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYP-----ik~r~~~~~f~~~L~~~~i  215 (279)
T COG2961         145 LALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYP-----IKDRRQIRRFLRALEALGI  215 (279)
T ss_pred             HHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEe-----ecchHHHHHHHHHHhhcCc
Confidence            6544332   2346999999964221  13444443    343222233333     4444556667666555543

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=93.78  E-value=0.23  Score=47.15  Aligned_cols=82  Identities=18%  Similarity=0.156  Sum_probs=52.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc-cc---cCCccE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL-SW---LVGSDV  373 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~-~~---~~~~D~  373 (457)
                      ++-++||+|-|.-.|==.+..+--.=+-+|-|+++.+++.|+.++..|. +....++...-.-.+.+. ..   .+.||+
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~-~l~~~I~lr~qk~~~~if~giig~nE~yd~  156 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANP-GLERAIRLRRQKDSDAIFNGIIGKNERYDA  156 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCc-chhhheeEEeccCccccccccccccceeee
Confidence            3457899987776542222211001257899999999999999998853 344556665433222222 11   257999


Q ss_pred             EEECCCC
Q 044572          374 LVVDPPR  380 (457)
Q Consensus       374 vi~DPPR  380 (457)
                      ++.|||-
T Consensus       157 tlCNPPF  163 (292)
T COG3129         157 TLCNPPF  163 (292)
T ss_pred             EecCCCc
Confidence            9999994

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=93.62  E-value=0.29  Score=47.25  Aligned_cols=130  Identities=18%  Similarity=0.232  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572          284 AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE  363 (457)
Q Consensus       284 ~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~  363 (457)
                      .....++.+..+-..+.  |..|-||=.++..+.+.  ..+.+..|..++..+..++|.+.     ..++++++.|.++.
T Consensus        45 ~l~~yl~~v~~~n~~~~--l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~~-----~~~v~v~~~DG~~~  115 (245)
T PF04378_consen   45 ALQPYLDAVRALNPDGE--LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFRR-----DRRVRVHHRDGYEG  115 (245)
T ss_dssp             GGHHHHHHHHHHSSSSS----EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--T-----TS-EEEE-S-HHHH
T ss_pred             HHHHHHHHHHHhccCCC--cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhcc-----CCccEEEeCchhhh
Confidence            33445555555432333  88999999999998854  57999999999999988887654     35899999998875


Q ss_pred             cccccC---CccEEEECCCCCCccH------HHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhc
Q 044572          364 PLSWLV---GSDVLVVDPPRKGLDS------SLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEAS  427 (457)
Q Consensus       364 ~~~~~~---~~D~vi~DPPR~Gl~~------~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~  427 (457)
                      +.....   +--+|++|||+.--++      .+.+++.+....--+|+-=     +......+.|...+.+..
T Consensus       116 l~allPP~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYP-----i~~~~~~~~~~~~l~~~~  183 (245)
T PF04378_consen  116 LKALLPPPERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYP-----IKDRERVDRFLRALKALG  183 (245)
T ss_dssp             HHHH-S-TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEE-----ESSHHHHHHHHHHHHHH-
T ss_pred             hhhhCCCCCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEee-----cccHHHHHHHHHHHHhcC
Confidence            544332   3459999999743222      2344444553222333332     333444566666555443

; PDB: 2OO3_A.

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=93.33  E-value=0.41  Score=51.30  Aligned_cols=106  Identities=21%  Similarity=0.098  Sum_probs=62.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhC--C--CCEEEEEeCCHHHHHHHHHHHhhCCCCC
Q 044572          274 PSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAAR--K--CRSVKCVEINKESQLSFEKTVSRLPKSV  349 (457)
Q Consensus       274 ~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~--~--~~~V~gVE~~~~av~~A~~Na~~~~~~~  349 (457)
                      .+.||. -+...+.+.+.+.....++..+.|++||||.+-+......  +  ...++|-|....+...++.|....+.+ 
T Consensus       194 ~g~~~T-p~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~-  271 (501)
T TIGR00497       194 GGEFFT-PQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID-  271 (501)
T ss_pred             CceeeC-cHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC-
Confidence            344444 3445444433222211246789999999999877654321  1  246999999999999999997542211 


Q ss_pred             CCcEEEEEccCCcCcccc-cCCccEEEECCCCC
Q 044572          350 DGNISWHNADNSIEPLSW-LVGSDVLVVDPPRK  381 (457)
Q Consensus       350 ~~nv~~~~~d~~~~~~~~-~~~~D~vi~DPPR~  381 (457)
                      .+......+|........ ...||+|+.|||..
T Consensus       272 ~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~  304 (501)
T TIGR00497       272 YANFNIINADTLTTKEWENENGFEVVVSNPPYS  304 (501)
T ss_pred             ccccCcccCCcCCCccccccccCCEEeecCCcc
Confidence            122333345543321111 23699999999953

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=93.12  E-value=0.1  Score=50.45  Aligned_cols=51  Identities=20%  Similarity=0.279  Sum_probs=36.7

Q ss_pred             HHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH
Q 044572          287 ILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE  339 (457)
Q Consensus       287 ~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~  339 (457)
                      +|+.+|.+.++  +..+++|+|||+|+.++.+...  ...|+.-|+++..+...+
T Consensus         7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~--~~~vi~ND~~~~l~~~~~   59 (260)
T PF02086_consen    7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP--GKRVIINDINPDLINFWK   59 (260)
T ss_dssp             GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhccc--ccceeeeechHHHHHHHH
Confidence            45667777776  5889999999999999888653  469999999998877665

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=92.73  E-value=0.22  Score=47.25  Aligned_cols=85  Identities=11%  Similarity=0.036  Sum_probs=57.7

Q ss_pred             HHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572          285 FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP  364 (457)
Q Consensus       285 ~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~  364 (457)
                      ..++.+++.+.-+.-..++|+|||.|.++-++-.. +..+++-+|.|..|++.++.. +.   +. -.+.+..+|-+...
T Consensus        59 g~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~-qd---p~-i~~~~~v~DEE~Ld  132 (325)
T KOG2940|consen   59 GDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDA-QD---PS-IETSYFVGDEEFLD  132 (325)
T ss_pred             HHHHHHHHHHHhhhCcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhcc-CC---Cc-eEEEEEecchhccc
Confidence            34555555554345678999999999999998864 578999999999999887753 22   11 13556667754332


Q ss_pred             ccccCCccEEEE
Q 044572          365 LSWLVGSDVLVV  376 (457)
Q Consensus       365 ~~~~~~~D~vi~  376 (457)
                       -..+.+|+||.
T Consensus       133 -f~ens~DLiis  143 (325)
T KOG2940|consen  133 -FKENSVDLIIS  143 (325)
T ss_pred             -ccccchhhhhh
Confidence             22356887754

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=92.71  E-value=0.59  Score=46.21  Aligned_cols=89  Identities=11%  Similarity=0.122  Sum_probs=64.9

Q ss_pred             HHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572          286 DILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI  362 (457)
Q Consensus       286 ~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~  362 (457)
                      ..|++.+++.+.  ++...+|.-=|.|+-+-.+....+ .++++|+|.++.|++.|++.....    .+++.++++.-..
T Consensus         9 pVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~----~~r~~~v~~~F~~   84 (314)
T COG0275           9 PVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF----DGRVTLVHGNFAN   84 (314)
T ss_pred             chHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc----CCcEEEEeCcHHH
Confidence            356677777654  678999999999999988887643 357999999999999999887652    3689999987543


Q ss_pred             Ccccc----cCCccEEEECC
Q 044572          363 EPLSW----LVGSDVLVVDP  378 (457)
Q Consensus       363 ~~~~~----~~~~D~vi~DP  378 (457)
                      .....    ...+|=|++|-
T Consensus        85 l~~~l~~~~i~~vDGiL~DL  104 (314)
T COG0275          85 LAEALKELGIGKVDGILLDL  104 (314)
T ss_pred             HHHHHHhcCCCceeEEEEec
Confidence            22111    23567676654

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=92.63  E-value=0.4  Score=47.28  Aligned_cols=48  Identities=29%  Similarity=0.325  Sum_probs=40.9

Q ss_pred             hCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          295 YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       295 ~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      +...++.|||-|+|+|+.++.+...  .+..+|+|++++-++.+.+-...
T Consensus       219 ~s~~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~  266 (302)
T COG0863         219 YSFPGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQE  266 (302)
T ss_pred             cCCCCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHh
Confidence            3347999999999999999988765  35899999999999999887664

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=92.50  E-value=0.86  Score=46.11  Aligned_cols=95  Identities=17%  Similarity=0.053  Sum_probs=63.6

Q ss_pred             CCCCCeEEEEcc-cccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEE
Q 044572          296 VPYGASVTDLYA-GAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVL  374 (457)
Q Consensus       296 ~~~~~~vLDl~c-G~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~v  374 (457)
                      +.+|++|+=.|+ |.|.+++.+|+..+ .+|+++|++++-.+.|++=    +.   +  .++.+...+......+.+|+|
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l----GA---d--~~i~~~~~~~~~~~~~~~d~i  233 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL----GA---D--HVINSSDSDALEAVKEIADAI  233 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh----CC---c--EEEEcCCchhhHHhHhhCcEE
Confidence            347888776666 56679999998666 7999999999999988752    21   1  444433222222222348988


Q ss_pred             EECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          375 VVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       375 i~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |.-=|    ...+-..+..++..++++.+.
T Consensus       234 i~tv~----~~~~~~~l~~l~~~G~~v~vG  259 (339)
T COG1064         234 IDTVG----PATLEPSLKALRRGGTLVLVG  259 (339)
T ss_pred             EECCC----hhhHHHHHHHHhcCCEEEEEC
Confidence            77444    345677777777778888875

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=91.89  E-value=1.5  Score=41.07  Aligned_cols=106  Identities=16%  Similarity=0.102  Sum_probs=69.3

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC----CCCCcEEEEEccCCcCcccccCC---c
Q 044572          299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK----SVDGNISWHNADNSIEPLSWLVG---S  371 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~----~~~~nv~~~~~d~~~~~~~~~~~---~  371 (457)
                      .-.+.|+|||-|.+-+.|+....-.-++|.||--..-+..+..++.++.    +...|+.....++..++.++...   .
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs  140 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS  140 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence            4569999999999999999877667899999988887777776665432    23467888888888876654321   1


Q ss_pred             -c-EEEECCCC-------CCccHHHHHHHHhcCCCCcEEEEe
Q 044572          372 -D-VLVVDPPR-------KGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       372 -D-~vi~DPPR-------~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                       + ..+=||--       .-+...++....-....++++|..
T Consensus       141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti  182 (249)
T KOG3115|consen  141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI  182 (249)
T ss_pred             cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence             2 22334441       122223333333333477888875

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=91.84  E-value=0.49  Score=48.27  Aligned_cols=104  Identities=17%  Similarity=0.083  Sum_probs=69.8

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhC-------CCCCCCcEEEEEccCCcCc--ccc
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL-------PKSVDGNISWHNADNSIEP--LSW  367 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~-------~~~~~~nv~~~~~d~~~~~--~~~  367 (457)
                      .+++...|||+|+|.....+|..+++++-+|+|+....-+.|..|.+.+       +.. ...++.++++....-  ..+
T Consensus       191 g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~-~~~~~~i~gsf~~~~~v~eI  269 (419)
T KOG3924|consen  191 GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK-PNKIETIHGSFLDPKRVTEI  269 (419)
T ss_pred             CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC-cCceeecccccCCHHHHHHH
Confidence            4788999999999999999888888999999999988888887765432       211 234777888765421  112


Q ss_pred             cCCccEEEECCCCCC--ccHHHHHHHHhcCCCCcEE
Q 044572          368 LVGSDVLVVDPPRKG--LDSSLVHALQSIGSAERKA  401 (457)
Q Consensus       368 ~~~~D~vi~DPPR~G--l~~~v~~~l~~~~~~~~iv  401 (457)
                      ....++|++|-=+..  +..++-+.+..++..-+|+
T Consensus       270 ~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIi  305 (419)
T KOG3924|consen  270 QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRII  305 (419)
T ss_pred             hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEe
Confidence            245778888665442  2223445666676444444

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=91.56  E-value=0.47  Score=46.53  Aligned_cols=130  Identities=9%  Similarity=0.075  Sum_probs=82.7

Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHHhhC-C----CCCeEEEEccccc----HHHHHHHhhCC-----CCEEEEEeCCHHHH
Q 044572          270 ISLAPSSFGQANTRAFDILLRKLQKYV-P----YGASVTDLYAGAG----VIGLSLAAARK-----CRSVKCVEINKESQ  335 (457)
Q Consensus       270 ~~i~~~~FfQ~n~~~~~~l~~~i~~~~-~----~~~~vLDl~cG~G----~~sl~lA~~~~-----~~~V~gVE~~~~av  335 (457)
                      +.+.-+.||. |++..+.+-+.+...+ .    ..-+||-++|+||    ++++.+....+     .-+|+|.|+|..++
T Consensus        64 ltin~T~FFR-~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L  142 (268)
T COG1352          64 LTINVTEFFR-DPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVL  142 (268)
T ss_pred             hhhccchhcc-CcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHH
Confidence            4456688888 5777788888777633 1    1357999999999    57777766542     24799999999999


Q ss_pred             HHHHH------HHhh-C------------CC-------CCCCcEEEEEccCCcCcccccCCccEEEE-------CCCCCC
Q 044572          336 LSFEK------TVSR-L------------PK-------SVDGNISWHNADNSIEPLSWLVGSDVLVV-------DPPRKG  382 (457)
Q Consensus       336 ~~A~~------Na~~-~------------~~-------~~~~nv~~~~~d~~~~~~~~~~~~D~vi~-------DPPR~G  382 (457)
                      +.|++      +... .            ..       ..-.+|.|.+.|+.+... ..+.||+|++       |.|.  
T Consensus       143 ~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~~~--  219 (268)
T COG1352         143 EKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDEET--  219 (268)
T ss_pred             HHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCHHH--
Confidence            99973      2210 0            00       011346666666654332 3456998765       4432  


Q ss_pred             ccHHHHHHHHhcCCCCcEEEEe
Q 044572          383 LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       383 l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                       ..++++.+...-.+++++++.
T Consensus       220 -q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         220 -QERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             -HHHHHHHHHHHhCCCCEEEEc
Confidence             224555555544588888885

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=90.98  E-value=6.3  Score=35.66  Aligned_cols=107  Identities=15%  Similarity=0.116  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572          282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS  361 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~  361 (457)
                      .+.++.|.+.+.+...++.+|+=++|=+-...+.-. ...-.+++..|.+..--.        .  +  .+ .|+.-|-.
T Consensus         9 ~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~-~~~~~~~~Lle~D~RF~~--------~--~--~~-~F~fyD~~   74 (162)
T PF10237_consen    9 DETAEFLARELLDGALDDTRIACLSTPSLYEALKKE-SKPRIQSFLLEYDRRFEQ--------F--G--GD-EFVFYDYN   74 (162)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhh-cCCCccEEEEeecchHHh--------c--C--Cc-ceEECCCC
Confidence            455677778777766567899988888777776651 122358999999987532        1  1  12 34443433


Q ss_pred             c--Cc-ccccCCccEEEECCCCCCccHHHH----HHHHhcCCC-CcEEEEe
Q 044572          362 I--EP-LSWLVGSDVLVVDPPRKGLDSSLV----HALQSIGSA-ERKAKSL  404 (457)
Q Consensus       362 ~--~~-~~~~~~~D~vi~DPPR~Gl~~~v~----~~l~~~~~~-~~ivyvs  404 (457)
                      .  .+ ..+...+|+||+|||-  +..++.    +.++.+..+ .++++++
T Consensus        75 ~p~~~~~~l~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~T  123 (162)
T PF10237_consen   75 EPEELPEELKGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCT  123 (162)
T ss_pred             ChhhhhhhcCCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEec
Confidence            2  12 2234689999999998  555554    556555433 3555543

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=90.54  E-value=3.1  Score=39.26  Aligned_cols=102  Identities=16%  Similarity=0.258  Sum_probs=66.3

Q ss_pred             CCCeEEEEccccc----HHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC-cCcccccCCcc
Q 044572          298 YGASVTDLYAGAG----VIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS-IEPLSWLVGSD  372 (457)
Q Consensus       298 ~~~~vLDl~cG~G----~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~-~~~~~~~~~~D  372 (457)
                      ..+.+++.+|+-|    +++|.+|.+.-..++++|-.+++.+...++.+...  +..+-++|+.|+.. +.+.. ....|
T Consensus        41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~--~~~~~vEfvvg~~~e~~~~~-~~~iD  117 (218)
T PF07279_consen   41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEA--GLSDVVEFVVGEAPEEVMPG-LKGID  117 (218)
T ss_pred             cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhc--cccccceEEecCCHHHHHhh-ccCCC
Confidence            3567899977644    45555555433568999999999888777777653  23345799999854 34433 46789


Q ss_pred             EEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          373 VLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       373 ~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .+++|==+.....++++.+ ++. +.+-|.|.
T Consensus       118 F~vVDc~~~d~~~~vl~~~-~~~-~~GaVVV~  147 (218)
T PF07279_consen  118 FVVVDCKREDFAARVLRAA-KLS-PRGAVVVC  147 (218)
T ss_pred             EEEEeCCchhHHHHHHHHh-ccC-CCceEEEE
Confidence            9999987654443455543 343 45566664

The function of this family is unknown.

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=89.39  E-value=0.42  Score=52.27  Aligned_cols=13  Identities=15%  Similarity=0.365  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHhh
Q 044572          332 KESQLSFEKTVSR  344 (457)
Q Consensus       332 ~~av~~A~~Na~~  344 (457)
                      ...+...+.|++.
T Consensus       900 kK~~~~m~~~ik~  912 (1102)
T KOG1924|consen  900 KKNLQQMENQIKK  912 (1102)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444443

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=89.31  E-value=0.85  Score=46.36  Aligned_cols=60  Identities=22%  Similarity=0.215  Sum_probs=43.3

Q ss_pred             CCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572          279 QANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK  340 (457)
Q Consensus       279 Q~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~  340 (457)
                      |-.-+....+++.|.++. +-+.|+|+|+|-|.++-.++-..| -+|+|||.|..+.+.|++
T Consensus       135 qhEi~~lselvSsi~~f~-gi~~vvD~GaG~G~LSr~lSl~y~-lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  135 QHEIRRLSELVSSISDFT-GIDQVVDVGAGQGHLSRFLSLGYG-LSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             HHHHHHHHHHHHHHHhhc-CCCeeEEcCCCchHHHHHHhhccC-ceEEEeccchHHHHHHHH
Confidence            433333444455555543 467899999999999999986543 589999999888877654

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=89.01  E-value=1  Score=39.67  Aligned_cols=54  Identities=7%  Similarity=0.021  Sum_probs=37.8

Q ss_pred             EEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccC-CccEEEECCC
Q 044572          324 SVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLV-GSDVLVVDPP  379 (457)
Q Consensus       324 ~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~-~~D~vi~DPP  379 (457)
                      +|+|.||-++|++.+++.++..  +..++++++..+=+........ ..|+++.|=-
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~--~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG   55 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEA--GLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG   55 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHT--T-GSGEEEEES-GGGGGGT--S--EEEEEEEES
T ss_pred             CEEEEECHHHHHHHHHHHHHhc--CCCCcEEEEECCHHHHHhhCccCCcCEEEEECC
Confidence            6999999999999999999874  3446899998775554322233 6899999864

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=88.28  E-value=5.9  Score=38.10  Aligned_cols=82  Identities=18%  Similarity=0.087  Sum_probs=56.9

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--cccCCcc
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSD  372 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~~~~~D  372 (457)
                      +++|.+||-|++++|+.--+.+...+ -.-|++||.++.+=.+.--=+++     -.||--|.-|+..-..  -+..-.|
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-----RtNiiPIiEDArhP~KYRmlVgmVD  228 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-----RTNIIPIIEDARHPAKYRMLVGMVD  228 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-----cCCceeeeccCCCchheeeeeeeEE
Confidence            45899999999999998888887655 35799999998875554322222     2567777778754211  1124579


Q ss_pred             EEEECCCCCC
Q 044572          373 VLVVDPPRKG  382 (457)
Q Consensus       373 ~vi~DPPR~G  382 (457)
                      +||.|=+...
T Consensus       229 vIFaDvaqpd  238 (317)
T KOG1596|consen  229 VIFADVAQPD  238 (317)
T ss_pred             EEeccCCCch
Confidence            9999987543

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=87.27  E-value=1.9  Score=43.87  Aligned_cols=98  Identities=20%  Similarity=0.194  Sum_probs=64.5

Q ss_pred             CCCeEEEEcccc-cHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEc-cCCcCccccc--CCccE
Q 044572          298 YGASVTDLYAGA-GVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA-DNSIEPLSWL--VGSDV  373 (457)
Q Consensus       298 ~~~~vLDl~cG~-G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~-d~~~~~~~~~--~~~D~  373 (457)
                      .+.+|+=+|||. |.+++.+|+..|+++|+++|.+++=++.|++-...      +.+..... ++........  ..+|+
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~------~~~~~~~~~~~~~~~~~~t~g~g~D~  241 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA------DVVVNPSEDDAGAEILELTGGRGADV  241 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC------eEeecCccccHHHHHHHHhCCCCCCE
Confidence            344888888884 77778888888999999999999999999872111      11111111 1111111122  25899


Q ss_pred             EEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          374 LVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       374 vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|-   ..|....+.+++...++.+++++++
T Consensus       242 vie---~~G~~~~~~~ai~~~r~gG~v~~vG  269 (350)
T COG1063         242 VIE---AVGSPPALDQALEALRPGGTVVVVG  269 (350)
T ss_pred             EEE---CCCCHHHHHHHHHHhcCCCEEEEEe
Confidence            885   5675555666777777788999987

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=86.96  E-value=0.18  Score=47.11  Aligned_cols=58  Identities=24%  Similarity=0.234  Sum_probs=42.6

Q ss_pred             CHHHHHHHHHHHHh-hCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572          281 NTRAFDILLRKLQK-YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK  340 (457)
Q Consensus       281 n~~~~~~l~~~i~~-~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~  340 (457)
                      ..++..+++..=.. +-.+..++||||+|-|-++..++..  +.+|+|-|.|..|....++
T Consensus        94 Se~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~--feevyATElS~tMr~rL~k  152 (288)
T KOG3987|consen   94 SEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT--FEEVYATELSWTMRDRLKK  152 (288)
T ss_pred             cHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch--HHHHHHHHhhHHHHHHHhh
Confidence            35666666542211 1113478999999999999999975  6699999999999877654

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.30  E-value=1.4  Score=43.97  Aligned_cols=98  Identities=17%  Similarity=0.065  Sum_probs=63.1

Q ss_pred             CCCCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC--Cc---Cccccc-
Q 044572          296 VPYGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN--SI---EPLSWL-  368 (457)
Q Consensus       296 ~~~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~--~~---~~~~~~-  368 (457)
                      ++.|.+||=+|+| +|..++..|+..|+++|+.+|.++.-++.|++ .-.      +.+.......  .+   ...+.. 
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga------~~~~~~~~~~~~~~~~~~v~~~~g  239 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA------TVTDPSSHKSSPQELAELVEKALG  239 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC------eEEeeccccccHHHHHHHHHhhcc
Confidence            3579999999998 58888889988899999999999999999987 321      2222222111  11   111111 


Q ss_pred             -CCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          369 -VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       369 -~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                       ..+|+.|-   -+|+...+..++...+..+.++.+
T Consensus       240 ~~~~d~~~d---CsG~~~~~~aai~a~r~gGt~vlv  272 (354)
T KOG0024|consen  240 KKQPDVTFD---CSGAEVTIRAAIKATRSGGTVVLV  272 (354)
T ss_pred             ccCCCeEEE---ccCchHHHHHHHHHhccCCEEEEe
Confidence             23777663   467766666666666645554444

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=85.49  E-value=1  Score=44.19  Aligned_cols=38  Identities=26%  Similarity=0.248  Sum_probs=33.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHH
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL  336 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~  336 (457)
                      .+++|||||||+|.-++.+... +..+|...|.|.+.++
T Consensus       116 ~~k~vLELgCg~~Lp~i~~~~~-~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  116 SGKRVLELGCGAALPGIFAFVK-GAVSVHFQDFNAEVLR  153 (282)
T ss_pred             cCceeEecCCcccccchhhhhh-ccceeeeEecchhhee
Confidence            6899999999999999998864 4578999999999884

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=83.24  E-value=4.4  Score=44.97  Aligned_cols=106  Identities=12%  Similarity=0.037  Sum_probs=63.8

Q ss_pred             CCeEEEEcccccHHHHHHHhhC-------C-----CCEEEEEeCCHHHHHHHHHHH--------------hh-----CCC
Q 044572          299 GASVTDLYAGAGVIGLSLAAAR-------K-----CRSVKCVEINKESQLSFEKTV--------------SR-----LPK  347 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~-------~-----~~~V~gVE~~~~av~~A~~Na--------------~~-----~~~  347 (457)
                      .-+|+|+|=|+|.-.+.+.+..       .     --+++++|..+-..+..++-.              +.     .+.
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            3579999999998655555322       0     137999998653322222211              00     000


Q ss_pred             ------CCCCcEEEEEccCCcCcccccCCccEEEECC--CCCC---ccHHHHHHHHhcCCCCcEEEEe
Q 044572          348 ------SVDGNISWHNADNSIEPLSWLVGSDVLVVDP--PRKG---LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       348 ------~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DP--PR~G---l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                            ++.-+.+.+.||+.+.+.++...+|++++|+  |.+.   -+.++.+.|.++..++..+..-
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~  205 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF  205 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence                  0011455778898876665545699999997  6543   2447888888776566555543

>PRK11524 putative methyltransferase; Provisional

Probab=82.64  E-value=1.6  Score=43.08  Aligned_cols=53  Identities=11%  Similarity=0.087  Sum_probs=35.8

Q ss_pred             cEEEEEccCCcCcccc-cCCccEEEECCCCCC-cc-----------------HHHHHHHHhcCCCCcEEEEe
Q 044572          352 NISWHNADNSIEPLSW-LVGSDVLVVDPPRKG-LD-----------------SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       352 nv~~~~~d~~~~~~~~-~~~~D~vi~DPPR~G-l~-----------------~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.+++++|+.+.+..+ .+.+|+||+|||+.. .+                 .+++..+.++..+++.+|+.
T Consensus         8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            4578999998865443 257999999999742 10                 13445555544578888886

>PRK13699 putative methylase; Provisional

Probab=81.05  E-value=1.8  Score=41.30  Aligned_cols=28  Identities=14%  Similarity=0.143  Sum_probs=22.1

Q ss_pred             EEEEccCCcCccccc-CCccEEEECCCCC
Q 044572          354 SWHNADNSIEPLSWL-VGSDVLVVDPPRK  381 (457)
Q Consensus       354 ~~~~~d~~~~~~~~~-~~~D~vi~DPPR~  381 (457)
                      ++++||+.+.+..+. +.+|+||.|||+.
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~   31 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILTDPPYL   31 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEeCCCcc
Confidence            678999987655442 5799999999984

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=80.21  E-value=3.8  Score=41.34  Aligned_cols=44  Identities=25%  Similarity=0.241  Sum_probs=38.2

Q ss_pred             CCCCeEEEEcc-cccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572          297 PYGASVTDLYA-GAGVIGLSLAAARKCRSVKCVEINKESQLSFEK  340 (457)
Q Consensus       297 ~~~~~vLDl~c-G~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~  340 (457)
                      ++|++|.=.|| |.|.-++.-|+..++.++++||++++-++.|++
T Consensus       184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~  228 (366)
T COG1062         184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK  228 (366)
T ss_pred             CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence            46888777777 688888888988999999999999999999875

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=80.15  E-value=1.3  Score=46.53  Aligned_cols=102  Identities=19%  Similarity=0.080  Sum_probs=62.7

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc------cCCcc
Q 044572          299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW------LVGSD  372 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~------~~~~D  372 (457)
                      +..+|=++=|.|.+...+-.+.+..++++||++|++++.|+.+.....   ..+...+-.|..+.+.+.      ...||
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---~~r~~V~i~dGl~~~~~~~k~~~~~~~~d  372 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---SDRNKVHIADGLDFLQRTAKSQQEDICPD  372 (482)
T ss_pred             cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---hhhhhhhHhhchHHHHHHhhccccccCCc
Confidence            445666777778887777655666789999999999999998864311   112233334444333221      23699


Q ss_pred             EEEEC-----------CCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          373 VLVVD-----------PPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       373 ~vi~D-----------PPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      ++++|           ||-.=+...++..++..-+++++..+
T Consensus       373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~i  414 (482)
T KOG2352|consen  373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFII  414 (482)
T ss_pred             EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEE
Confidence            99987           33223344566666665556665444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	457
2jjq_A	425	The Crystal Structure Of Pyrococcus Abyssi Trna (Ur		6e-13
2vs1_A	425	The Crystal Structure Of Pyrococcus Abyssi Trna (Ur		1e-11

>pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna (Uracil-54, C5)-Methyltransferase In Complex With S-Adenosyl-L- Homocysteine Length = 425

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 142/346 (41%), Gaps = 58/346 (16%)
Query: 53  QCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTS 112
           +C  F  C GCT +   +   +  +     + +G       S +++G R R  LA+    
Sbjct: 80  RCKAFGKCGGCTLQHLNYDYQLEFKRKKLKRILGFEVEVVPSPKIFGHRNRIDLAI---- 135
Query: 113 TSPLIGLYQEGTH-NVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYV 171
           T   IG  + G    +VDI  C         A+E L++ I+E  +  ++     G LRY+
Sbjct: 136 TKDGIGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYM 195
Query: 172 QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHY 231
            +               R GK                    E +  F+ + G      +Y
Sbjct: 196 VL---------------REGKFT-----------------EEVMVNFVTKEGNLPDPTNY 223
Query: 232 IH--SVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILL 289
               S++ +   S ++V +G+  R   G+    E +  +D  + P+SF Q N+     L+
Sbjct: 224 FDFDSIYWSVNRSKSDVSYGDIER-FWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLV 282
Query: 290 RKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV 349
           RK+ + V  G  + D+Y+G G  G+ LA  ++  +VK  + N+     F   ++R     
Sbjct: 283 RKVSELVE-GEKILDMYSGVGTFGIYLA--KRGFNVKGFDSNE-----FAIEMARR---- 330
Query: 350 DGNISWHNADNSIEPLS----WLVGSDVLVVDPPRKGLDSSLVHAL 391
             N+  +N D   E  S     + G D ++VDPPR GL   LV  L
Sbjct: 331 --NVEINNVDAEFEVASDREVSVKGFDTVIVDPPRAGLHPRLVKRL 374

>pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna (Uracil-54, C5)-Methyltransferase In Complex With S-Adenosyl-L- Homocysteine Length = 425

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 141/346 (40%), Gaps = 58/346 (16%)
Query: 53  QCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTS 112
           +C  F  C GCT +   +   +  +     + +G       S +++G R R  LA+    
Sbjct: 80  RCKAFGKCGGCTLQHLNYDYQLEFKRKKLKRILGFEVEVVPSPKIFGHRNRIDLAI---- 135
Query: 113 TSPLIGLYQEGTH-NVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYV 171
           T   IG  + G    +VDI            A+E L++ I+E  +  ++     G LRY+
Sbjct: 136 TKDGIGFRERGKWWKIVDIDEXPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYM 195
Query: 172 QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHY 231
            +               R GK                    E +  F+ + G      +Y
Sbjct: 196 VL---------------REGKFT-----------------EEVMVNFVTKEGNLPDPTNY 223
Query: 232 IH--SVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILL 289
               S++ +   S ++V +G+  R   G+    E +  +D  + P+SF Q N+     L+
Sbjct: 224 FDFDSIYWSVNRSKSDVSYGDIER-FWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLV 282
Query: 290 RKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV 349
           RK+ + V  G  + D+Y+G G  G+ LA  ++  +VK  + N+     F   ++R     
Sbjct: 283 RKVSELVE-GEKILDMYSGVGTFGIYLA--KRGFNVKGFDSNE-----FAIEMARR---- 330
Query: 350 DGNISWHNADNSIEPLS----WLVGSDVLVVDPPRKGLDSSLVHAL 391
             N+  +N D   E  S     + G D ++VDPPR GL   LV  L
Sbjct: 331 --NVEINNVDAEFEVASDREVSVKGFDTVIVDPPRAGLHPRLVKRL 374

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	457
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	2e-43
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	1e-30
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	2e-29
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	6e-08
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	2e-05
1ws6_A	171	Methyltransferase; structural genomics, riken stru	3e-05
3ll7_A	410	Putative methyltransferase; methytransferase, stru	5e-04

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Length = 425

 Score =  157 bits (399), Expect = 2e-43
 Identities = 75/354 (21%), Positives = 131/354 (37%), Gaps = 76/354 (21%)

Query: 54  CPHFQSCSGCTHEFNLHRPIIVDEA-----TDFFKSIGLLDF-TFDSCRLYGWRCRAKLA 107
           C  F  C GCT     H   +  +          K I   +     S +++G R R  LA
Sbjct: 81  CKAFGKCGGCTL---QH---LNYDYQLEFKRKKLKRILGFEVEVVPSPKIFGHRNRIDLA 134

Query: 108 VRGTSTSPLIGLYQEGT-HNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
           +        IG  + G    +VDI  C         A+E L++ I+E  +  ++     G
Sbjct: 135 ITKDG----IGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEG 190

Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSR 226
            LRY+ +      T           +V +  V    N          +  +         
Sbjct: 191 FLRYM-VLREGKFT----------EEVMVNFVTKEGNLP-----DPTNYFD--------- 225

Query: 227 SREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFD 286
                  S++ +   S ++V +G+      G+    E +  +D  + P+SF Q N+    
Sbjct: 226 -----FDSIYWSVNRSKSDVSYGDI-ERFWGKEFIRERLDDVDYLIHPNSFFQTNSYQAV 279

Query: 287 ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP 346
            L+RK+ + V  G  + D+Y+G G  G+ L  A++  +VK  + N+ +       +    
Sbjct: 280 NLVRKVSELVE-GEKILDMYSGVGTFGIYL--AKRGFNVKGFDSNEFA-------IE--- 326

Query: 347 KSVDGNISWHNAD-NSIEPLSWLVGS--------DVLVVDPPRKGLDSSLVHAL 391
                     N + N+++    +           D ++VDPPR GL   LV  L
Sbjct: 327 ---MAR---RNVEINNVDAEFEVASDREVSVKGFDTVIVDPPRAGLHPRLVKRL 374

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Length = 433

 Score =  122 bits (308), Expect = 1e-30
 Identities = 62/381 (16%), Positives = 114/381 (29%), Gaps = 128/381 (33%)

Query: 54  CPHFQSCSGCT--H-------EF---NLHR-------PIIVDEATDFFKSIGLLDFTFDS 94
           CPHF  C GC   H             L R        +I D                  
Sbjct: 81  CPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVP---------------- 124

Query: 95  CRLYGWRCRAKLAVRGTST--SPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIK 152
              +G+R RA+L++          +G  + G+ ++VD+  C    P++ A +  +R  + 
Sbjct: 125 ---WGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACL- 180

Query: 153 ELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL 212
                        G +  VQ                 +G + I     +    S + +KL
Sbjct: 181 ----GSLQAMRHLGHVELVQA---------------TSGTLMILRH--TAPLSSADREKL 219

Query: 213 ESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISL 272
           E  +                  +       +  +         +     W +  G+ ++ 
Sbjct: 220 ERFSH--------------SEGLDLYLAPDSEIL-------ETVSGEMPWYDSNGLRLTF 258

Query: 273 APSSFGQANTRAFDILLRK------LQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVK 326
           +P  F Q N      ++ +      +Q        V DL+ G G   L L  A +  SV 
Sbjct: 259 SPRDFIQVNAGVNQKMVARALEWLDVQP----EDRVLDLFCGMGNFTLPL--ATQAASVV 312

Query: 327 CVEINKESQLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS-------------- 371
            VE            V +            NA  N ++ +++   +              
Sbjct: 313 GVEGVPAL-------VEKG---------QQNARLNGLQNVTFYHENLEEDVTKQPWAKNG 356

Query: 372 -DVLVVDPPRKGLDSSLVHAL 391
            D +++DP R G    ++  +
Sbjct: 357 FDKVLLDPARAGAA-GVMQQI 376

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} Length = 369

 Score =  117 bits (295), Expect = 2e-29
 Identities = 52/338 (15%), Positives = 99/338 (29%), Gaps = 70/338 (20%)

Query: 79  TDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHP 138
                    L        +  +R RA+  +          ++ + T + + +    A   
Sbjct: 26  QSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASE 85

Query: 139 RINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLV 198
            IN  +  +  G++               LR+  +    Y T+L       + +  ++L+
Sbjct: 86  LINQLMTAMIAGVRNN-----------PVLRHK-LFQIDYLTTL-------SNQAVVSLL 126

Query: 199 WNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGE 258
           ++         D+    AE L                      + + +    + +  L +
Sbjct: 127 YH-----KKLDDEWRQEAEAL-------------RDALRAQNLNVHLIGRATKTKIELDQ 168

Query: 259 TDFWE----NVGGIDISLAPSSFGQANTRAFDILLRKLQKYV-PYGASVTDLYAGAGVIG 313
               E        +      +SF Q N      +L             + +LY G G   
Sbjct: 169 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFS 228

Query: 314 LSLAAARKCRSVKCVEINKES-------------------QLSFEKTVSRLPKSVDGNIS 354
           L+L  AR    V   EI K S                   +++ E+    +    + N  
Sbjct: 229 LAL--ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL 286

Query: 355 WHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQ 392
                 S +        + + VDPPR GLDS     +Q
Sbjct: 287 QGIDLKSYQC-------ETIFVDPPRSGLDSETEKMVQ 317

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 6e-09
 Identities = 67/443 (15%), Positives = 112/443 (25%), Gaps = 142/443 (32%)

Query: 55  PHFQSCSGCTHEFNLHRPIIVDEATDFF----KSIGLLDFTFDSCRL------------- 97
             F     C    ++ + I+  E  D       ++      F +                
Sbjct: 27  DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 98  ----YGWRCRAKLAVRGTSTSPLIGLYQEG---THNVVDIPHCKAHHPRINAAVELLRQG 150
               Y +   + +       S +  +Y E     +N       K +  R+      LRQ 
Sbjct: 87  LRINYKF-LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-VFAKYNVSRLQP-YLKLRQA 143

Query: 151 IKELNVEPYDEDDRTGDLRYVQMAVTTY------NTSLPASERYRNGKVQITLV----W- 199
           + EL                    V          T + A +   + KVQ  +     W 
Sbjct: 144 LLELRPAKN---------------VLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWL 187

Query: 200 NSRNEKSPNS--DKLESLAEFLWRNGGSRS----------------------REHYIHS- 234
           N +N  SP +  + L+ L   +  N  SRS                       + Y +  
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 235 -----VWANFQTSTNNVI--FGNRWRHLL-----GETDFWENVGGIDISLAPSSFGQANT 282
                V              F    + LL       TDF        ISL   S      
Sbjct: 248 LVLLNVQ------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 283 RAFDILLRKLQKYVPYGASVTDLYAGAGVIG---LSLAAAR----KCRS-----VKCVEI 330
               +LL+ L           DL           LS+ A               V C ++
Sbjct: 302 EVKSLLLKYL------DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 331 NKESQLSFE-----------KTVSRLPKSVDGNIS-------WHNADNSIEP---LSWLV 369
               + S               +S  P S   +I        W +     +    ++ L 
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSA--HIPTILLSLIWFDVI-KSDVMVVVNKLH 412

Query: 370 GSDVLVVDPPRKGLDSSLVHALQ 392
              ++   P  K    S+  ++ 
Sbjct: 413 KYSLVEKQP--KESTISI-PSIY 432

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score = 52.3 bits (125), Expect = 6e-08
 Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 10/146 (6%)

Query: 244 NNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR--AFDILLRKLQKYVPYGAS 301
             +           +     +     I L    +        A  I  R  Q        
Sbjct: 24  PEIAAVPELAKYWAQRYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQ--SFKCDV 81

Query: 302 VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS 361
           V D + G G  G ++  A     V  ++I+   +++  +  + +   +   I +   D  
Sbjct: 82  VVDAFCGVG--GNTIQFALTGMRVIAIDID-PVKIALARNNAEVYG-IADKIEFICGD-- 135

Query: 362 IEPLSWLVGSDVLVVDPPRKGLDSSL 387
              L+  + +DV+ + PP  G D + 
Sbjct: 136 FLLLASFLKADVVFLSPPWGGPDYAT 161

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 25/142 (17%)

Query: 251 RWRHLLGETDFW----ENVGGI----DISLAPSSFGQANTRAFDILLRKLQKYVPYGASV 302
              HL GE        EN  G     DI+    S      R       ++ K V     V
Sbjct: 148 ELEHLAGENRTLTIHKEN--GYRLWVDIAKVYFSPRLGGER------ARIMKKVSLNDVV 199

Query: 303 TDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI 362
            D++AG G    S+A     + +  ++IN  +    +K +      ++  I    +D   
Sbjct: 200 VDMFAGVG--PFSIACKNAKK-IYAIDINPHAIELLKKNIKL--NKLEHKIIPILSDVRE 254

Query: 363 EPLSWLVGSDVLVVDPPRKGLD 384
             +      + ++++ P+    
Sbjct: 255 VDVKG----NRVIMNLPKFAHK 272

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 Length = 171

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 10/111 (9%)

Query: 285 FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344
           FD L    +   P      D +AG+G +GL  AA+    +V  VE + E+    ++ V R
Sbjct: 32  FDYL----RLRYPRRGRFLDPFAGSGAVGLE-AASEGWEAV-LVEKDPEAVRLLKENVRR 85

Query: 345 LPKSVDGNISWHNADNSIEPLSWLVGS-DVLVVDPP-RKGLDSSLVHALQS 393
               +   +     +  +           V  + PP    L +     L S
Sbjct: 86  T--GLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLAS 134

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA 358
           G  V DL  G G+    +A   K      +E N E+ ++    +  L      +++    
Sbjct: 94  GTKVVDLTGGLGID--FIALMSKASQGIYIERNDETAVAARHNIPLLLNEGK-DVNILTG 150

Query: 359 DNSIEPLSWLVGS--DVLVVDPPRKGLDSS 386
           D   E L  +     D + VDP R+     
Sbjct: 151 D-FKEYLPLIKTFHPDYIYVDPARRSGADK 179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	457
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	100.0
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	100.0
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	100.0
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.97
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.97
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.97
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.96
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.85
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.79
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.77
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.75
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.71
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.69
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.68
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.64
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.62
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.6
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.59
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.57
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.51
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.51
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.5
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.5
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.49
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.48
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.48
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.45
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.44
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.44
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.43
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.43
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.43
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.43
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.42
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.41
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.4
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.4
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.38
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.38
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.36
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.35
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.35
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.33
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.33
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.33
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.32
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.32
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.32
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.32
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.32
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.31
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.3
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.3
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.29
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.28
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.27
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.27
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.27
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.26
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.26
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.26
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.26
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.26
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.24
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.24
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.24
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.23
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.23
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.21
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.21
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.21
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.2
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.2
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.19
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.19
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.19
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.18
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.18
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.17
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.16
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.16
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.15
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.14
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.13
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.13
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.13
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.12
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.12
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.12
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.11
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.11
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.1
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.1
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.09
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.09
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.09
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.09
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.08
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.07
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.07
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.07
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.07
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.07
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.06
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.06
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.06
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.06
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.06
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.06
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.06
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.05
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.05
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.04
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.04
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.04
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.03
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.03
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.03
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.02
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.02
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.02
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.02
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.02
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.01
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.0
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.99
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.99
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.99
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.99
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.99
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.99
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.99
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.99
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.98
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.97
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.97
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.97
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.97
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.96
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.96
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.96
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.95
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.95
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.95
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.95
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.95
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.94
2o07_A	304	Spermidine synthase; structural genomics, structur	98.94
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.94
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.93
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.93
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.93
3ocj_A	305	Putative exported protein; structural genomics, PS	98.93
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.92
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.92
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.92
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.92
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.91
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.91
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.91
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.91
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.91
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.9
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.89
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.89
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.87
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.87
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.87
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.87
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.87
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.87
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.86
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.86
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.86
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.86
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.85
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.85
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.85
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.85
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.85
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.85
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.85
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.84
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.84
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.84
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.84
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.84
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.83
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.82
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.82
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.82
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.82
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.81
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.8
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.8
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.79
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.79
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.78
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.78
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.77
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.77
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.77
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.77
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.76
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.76
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.76
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.76
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.75
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.74
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.73
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.73
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.73
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.72
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.72
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.72
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.71
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.71
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.71
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.7
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.68
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.68
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.68
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.68
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.67
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.67
3lkd_A	542	Type I restriction-modification system methyltrans	98.67
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.66
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.64
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.63
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.62
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.61
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.61
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.61
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.59
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.59
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.59
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.58
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.57
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.56
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.53
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	98.53
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.52
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	98.52
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.52
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.48
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.48
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.45
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.45
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.44
3khk_A	544	Type I restriction-modification system methylation	98.43
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.42
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.41
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.4
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.4
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.39
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.38
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.35
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.34
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.33
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.33
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.3
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.26
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.23
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	98.22
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.21
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.18
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.18
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.11
3ufb_A	530	Type I restriction-modification system methyltran	98.08
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.08
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.07
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.07
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.04
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	98.01
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.95
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.93
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.92
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.91
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.9
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	97.87
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	97.86
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.85
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.83
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.83
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.8
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	97.72
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.68
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.64
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	97.64
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.54
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.53
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	97.53
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.53
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.47
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.35
3me5_A	482	Cytosine-specific methyltransferase; structural ge	97.25
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.2
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.02
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	96.95
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.91
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.75
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	96.74
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	96.72
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.55
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.53
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	96.4
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	96.29
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	95.89
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	95.84
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	95.45
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	95.11
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	93.87
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	93.39
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	87.92
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	87.4
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	87.11
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	86.02
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	85.69
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	85.38
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	84.11
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	83.93
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	83.66
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	83.4
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	83.35
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	83.33
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	83.15
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	82.56
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	82.53
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	81.64
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	81.19
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	80.9

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=100.00  E-value=1.6e-56  Score=463.47  Aligned_cols=342  Identities=23%  Similarity=0.308  Sum_probs=271.9

Q ss_pred             CCCCCccCCCCCCCcCccCccCccCCchHHHHHHHHHHHhcC-CCceecccCCCccceeeeeEEeeecCCCceEEEeecC
Q 044572           45 LPSLTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIG-LLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEG  123 (457)
Q Consensus        45 ~~~~Rv~p~C~~f~~CGGC~lqh~~~~~~~~~~~~~~l~r~g-~~~~~~~s~~~~~YRnR~~l~v~~~~g~~~vGf~~~~  123 (457)
                      .||+|++|+|+||+.||||+||| +.|+.|++.-+++|+|++ +....+.++.+||||||++|+++.  |+  +|||+++
T Consensus        72 ~S~~Rv~p~C~~~~~CGGC~lqh-~~y~~Ql~~K~~~l~r~~~~~~~~~~s~~~~~YRnk~~~~v~~--g~--~Gf~~~~  146 (425)
T 2jjq_A           72 SSPLRVGPRCKAFGKCGGCTLQH-LNYDYQLEFKRKKLKRILGFEVEVVPSPKIFGHRNRIDLAITK--DG--IGFRERG  146 (425)
T ss_dssp             CCTTBCC-----------CTTTT-BCHHHHHHHHHHHHHHHHSSCCEEECCSCSSSCBCEEEEEEET--TE--EEEEC--
T ss_pred             CCccccCCCCCCcCCCCCccCcC-CCHHHHHHHHHHHHHHccCCCCceecCCCcCCccceEEEEecC--CC--eEEeeCC
Confidence            67899999999999999999999 666555433223777764 321234688999999999999975  33  9999999


Q ss_pred             c-cceEeCCCCccCChhHHHHHHHHHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCccccccCCcEEEEEEeCCC
Q 044572          124 T-HNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSR  202 (457)
Q Consensus       124 s-~~iv~i~~C~i~~p~i~~~l~~l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~~~~~~v~v~lv~~~~  202 (457)
                      | |+||++++|++++|.+++++..++++++.+++++|++.++.|.||++.++..           ..+|++|+.+++.+.
T Consensus       147 s~~~iv~i~~C~i~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~g~lr~~~vr~~-----------~~~g~~~v~l~~~~~  215 (425)
T 2jjq_A          147 KWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREG-----------KFTEEVMVNFVTKEG  215 (425)
T ss_dssp             CTTSEEECSCBTTTBHHHHHHHHHHHHHHHHHTCCBBBTTTTBCSEEEEEEEEC-----------TTTCCEEEEEEESSS
T ss_pred             CCCcEEECcCCccCCHHHHHHHHHHHHHHHHcCCCccccccCCCcceEEEEEEc-----------cCCCCEEEEEEeCch
Confidence            9 9999999999999999999999999999999999999999999999865432           147899999888654


Q ss_pred             CCCCCCchhHHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccCeEEEeeeeEEEEECCCCCCCCCH
Q 044572          203 NEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT  282 (457)
Q Consensus       203 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~  282 (457)
                       .    .+.   + +          ..+.+.++|+++++...+.+.+ +..+++|+.++.++++|++|.+++++|||+|+
T Consensus       216 -~----~~~---l-~----------~~~~~~~i~~~~~~~~~~~~~g-~~~~l~G~~~i~e~~~g~~f~~~~~~F~q~n~  275 (425)
T 2jjq_A          216 -N----LPD---P-T----------NYFDFDSIYWSVNRSKSDVSYG-DIERFWGKEFIRERLDDVDYLIHPNSFFQTNS  275 (425)
T ss_dssp             -C----CCC---C-T----------TTCCCSEEEEEECCSSSCCSCC-EEEEEEECSCEEEEETTEEEEECTTSCCCSBH
T ss_pred             -h----HHH---H-h----------hcCCeeEEEEEcCCCCCceecc-eEEEEECCCeEEEEECCEEEEEccccccccCH
Confidence             1    111   1 0          2456788999888887788888 88999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572          283 RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI  362 (457)
Q Consensus       283 ~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~  362 (457)
                      .+++.|++++.+ +.++.+|||+|||+|.+++.+|+.  +.+|+|||+|++|++.|++|++.+   +.+ ++|+++|+.+
T Consensus       276 ~~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~n---gl~-v~~~~~d~~~  348 (425)
T 2jjq_A          276 YQAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEIN---NVD-AEFEVASDRE  348 (425)
T ss_dssp             HHHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHH---TCC-EEEEECCTTT
T ss_pred             HHHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHc---CCc-EEEEECChHH
Confidence            999999999988 567899999999999999999975  459999999999999999999873   334 9999999988


Q ss_pred             CcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccccccccCCCCCCCC
Q 044572          363 EPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSENQSLP  442 (457)
Q Consensus       363 ~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  442 (457)
                      .+..   .||+|++||||.|+...+++.+..++ +++++|+|     |++.+..+++..+.      +.-......+.+|
T Consensus       349 ~~~~---~fD~Vv~dPPr~g~~~~~~~~l~~l~-p~givyvs-----c~p~tlarDl~~l~------y~l~~~~~~DmFP  413 (425)
T 2jjq_A          349 VSVK---GFDTVIVDPPRAGLHPRLVKRLNREK-PGVIVYVS-----CNPETFARDVKMLD------YRIDEIVALDMFP  413 (425)
T ss_dssp             CCCT---TCSEEEECCCTTCSCHHHHHHHHHHC-CSEEEEEE-----SCHHHHHHHHHHSS------CCEEEEEEECCST
T ss_pred             cCcc---CCCEEEEcCCccchHHHHHHHHHhcC-CCcEEEEE-----CChHHHHhHHhhCe------EEEEEEEEECcCC
Confidence            6532   79999999999999999999999886 89999999     99999988877663      2222222446777


Q ss_pred             Cc
Q 044572          443 QT  444 (457)
Q Consensus       443 ~~  444 (457)
                      +|
T Consensus       414 ~T  415 (425)
T 2jjq_A          414 HT  415 (425)
T ss_dssp             TS
T ss_pred             CC
Confidence            76

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=100.00  E-value=3.5e-49  Score=410.39  Aligned_cols=320  Identities=18%  Similarity=0.278  Sum_probs=248.1

Q ss_pred             CCCCCccCCCCCCCcCccCccCccCCchHHH----HHHHHHHHhcCCCceecccCCCccceeeeeEEeee--cCCCceEE
Q 044572           45 LPSLTCALQCPHFQSCSGCTHEFNLHRPIIV----DEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRG--TSTSPLIG  118 (457)
Q Consensus        45 ~~~~Rv~p~C~~f~~CGGC~lqh~~~~~~~~----~~~~~~l~r~g~~~~~~~s~~~~~YRnR~~l~v~~--~~g~~~vG  118 (457)
                      .||+|++|+|+||+.||||+||| +.|+.|+    +.+.++|+++ +  +...++.+||||||++|+++.  .+|+..+|
T Consensus        72 ~S~~Rv~p~C~~~~~CGGC~~qh-~~y~~Ql~~K~~~v~~~l~~~-~--~~~~~~~~~~YRnr~~~~~~~~~~~~~~~~G  147 (433)
T 1uwv_A           72 DSPERETPRCPHFGVCGGCQQQH-ASVDLQQRSKSAALARLMKHD-V--SEVIADVPWGYRRRARLSLNYLPKTQQLQMG  147 (433)
T ss_dssp             CCTTBCCCSCTTTTTBTTCSCTT-BCHHHHHHHHHHHHHHHHTSC-C--CEEECCCSSSCBSEEEEEEEEETTTTEEEEE
T ss_pred             CCCCcCCCCCCCCCCCCCccccC-CCHHHHHHHHHHHHHHHHHHh-h--cccccCCccccCceEEEeeeEccCCCcEEEE
Confidence            67899999999999999999999 5554443    4588899887 3  222356799999999999984  45677899


Q ss_pred             EeecCccceEeCCCCccCChhHHHHHHHHHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCccccccCCcEEEEEE
Q 044572          119 LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLV  198 (457)
Q Consensus       119 f~~~~s~~iv~i~~C~i~~p~i~~~l~~l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~~~~~~v~v~lv  198 (457)
                      ||+++||+||+|++|++++|.+++++..++++++..++        .|.++++.++..            .++..+++. 
T Consensus       148 f~~~~s~~iv~i~~C~i~~~~~~~~~~~l~~~~~~~~~--------~~~~~~i~~~~~------------~~~~~l~~~-  206 (433)
T 1uwv_A          148 FRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQA--------MRHLGHVELVQA------------TSGTLMILR-  206 (433)
T ss_dssp             EEBTTSSCEEECSCCTTBCHHHHHHHHHHHHHHTTCGG--------GGGEEEEEEEEE------------TTEEEEEEE-
T ss_pred             EEcCCCCcEEECccCcCCCHHHHHHHHHHHHHHHhcCC--------CCCccEEEEEEe------------CCCcEEEEE-
Confidence            99999999999999999999999999999999876543        366888755432            234443322 


Q ss_pred             eCCCCCCCCCchhHHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccCeEEEeeeeEEEEECCCCCC
Q 044572          199 WNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG  278 (457)
Q Consensus       199 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~g~~~~i~~~~Ff  278 (457)
                       ......   .+..+.+.+ +....       . .++|.  +..      +....+++|...+++ ++|++|.+++++||
T Consensus       207 -~~~~l~---~~~~~~~~~-~~~~~-------~-~~~~~--~~~------~~~~~~l~g~~~~~~-~~g~~~~~~~~~f~  264 (433)
T 1uwv_A          207 -HTAPLS---SADREKLER-FSHSE-------G-LDLYL--APD------SEILETVSGEMPWYD-SNGLRLTFSPRDFI  264 (433)
T ss_dssp             -ESSCCC---HHHHHHHHH-HHHHH-------T-CEEEE--ESS------SSCCEEEECCCCEEE-ETTEEEECCSSSCC
T ss_pred             -ecCCCC---HHHHHHHHH-Hhhcc-------c-EEEEE--ECC------CCeEEEEeCCCcEEE-ECCEEEEECccccc
Confidence             222221   112222222 22110       1 24444  211      123467889887776 88999999999999


Q ss_pred             CCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEE
Q 044572          279 QANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH  356 (457)
Q Consensus       279 Q~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~  356 (457)
                      |+|+.+++.+++.+.+++.  ++.+|||+|||+|.+++.+|..  ..+|+|||+|++|++.|++|++.+   +..|++|+
T Consensus       265 q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~---~~~~v~f~  339 (433)
T 1uwv_A          265 QVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLN---GLQNVTFY  339 (433)
T ss_dssp             CSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHT---TCCSEEEE
T ss_pred             ccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHc---CCCceEEE
Confidence            9999999999999988764  5789999999999999999976  569999999999999999999883   34689999


Q ss_pred             EccCCcCccc--c-cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHH
Q 044572          357 NADNSIEPLS--W-LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRA  423 (457)
Q Consensus       357 ~~d~~~~~~~--~-~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~  423 (457)
                      ++|+.+.+..  + ...||+|++||||.|+. ++++.+..++ +++++|+|     |++.+..++...+.
T Consensus       340 ~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~~-~~~~~l~~~~-p~~ivyvs-----c~p~tlard~~~l~  402 (433)
T 1uwv_A          340 HENLEEDVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLE-PIRIVYVS-----CNPATLARDSEALL  402 (433)
T ss_dssp             ECCTTSCCSSSGGGTTCCSEEEECCCTTCCH-HHHHHHHHHC-CSEEEEEE-----SCHHHHHHHHHHHH
T ss_pred             ECCHHHHhhhhhhhcCCCCEEEECCCCccHH-HHHHHHHhcC-CCeEEEEE-----CChHHHHhhHHHHH
Confidence            9999885433  1 24799999999999997 6888898886 89999999     99999998876554

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=100.00  E-value=1.9e-44  Score=367.36  Aligned_cols=331  Identities=15%  Similarity=0.119  Sum_probs=242.9

Q ss_pred             cCccCccCc-cCCchHHH--HHHHHHHHhcCCCceecccCCCccceeeeeEEeeecCCCceEEEeecCccceEeCCCCcc
Q 044572           59 SCSGCTHEF-NLHRPIIV--DEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKA  135 (457)
Q Consensus        59 ~CGGC~lqh-~~~~~~~~--~~~~~~l~r~g~~~~~~~s~~~~~YRnR~~l~v~~~~g~~~vGf~~~~s~~iv~i~~C~i  135 (457)
                      .||||+||| .|+.|+..  +.+.++|+|+|..+.++.++.+|+||||++|+++..++...+|||.++||.+|+|++|++
T Consensus         3 gC~gc~~~~~~y~~Ql~~K~~~v~~~l~r~~~~~~~~~~~~~~~yRnr~~~~v~~~~~~~~~G~~~~~s~~iv~i~~C~i   82 (369)
T 3bt7_A            3 HMTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPA   82 (369)
T ss_dssp             CCCCSSCCGGGHHHHHHHHHHHHHHHHTTTCCCCCEEECCCSSSCBSEEEEEEEEETTEEEEEEECTTTCCEEECSCCTT
T ss_pred             CCCccccCCCCHHHHHHHHHHHHHHHHHhcCCCCCCccCCCccccceEEEEEEEEcCCcEEEEEEECCCCCEEeCcCCcc
Confidence            599999999 34444432  458899999885433455667899999999999865566789999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCccccccCCcEEEEEEeCCCCCCCCCchhHHHH
Q 044572          136 HHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL  215 (457)
Q Consensus       136 ~~p~i~~~l~~l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~~~~~~v~v~lv~~~~~~~~~~~~~~~~l  215 (457)
                      ++|.+++++..++++++..+.     ..+  .+.++  .+..          ..+|++|++++++.. .   . ...+.+
T Consensus        83 ~~~~i~~~l~~l~~~~~~~~~-----~r~--~~~~~--~~~~----------~~~g~~~v~~~~~~~-~---~-~~~~~~  138 (369)
T 3bt7_A           83 ASELINQLMTAMIAGVRNNPV-----LRH--KLFQI--DYLT----------TLSNQAVVSLLYHKK-L---D-DEWRQE  138 (369)
T ss_dssp             BCHHHHHHHHHHHHHHTTCHH-----HHT--TEEEE--EEEE----------CTTCEEEEEEEESSC-C---C-HHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCcc-----ccc--eeEEE--EEEe----------cCCCcEEEEEEECCC-C---C-HHHHHH
Confidence            999999999999988754310     000  12222  2221          145789998887543 1   1 122333


Q ss_pred             HHHHHHcCCCCCCCcee-EEEEEEeecCCCCcccCCeEEEeeccCeEEEee--ee--EEEEECCCCCCCCCHHHHHHHHH
Q 044572          216 AEFLWRNGGSRSREHYI-HSVWANFQTSTNNVIFGNRWRHLLGETDFWENV--GG--IDISLAPSSFGQANTRAFDILLR  290 (457)
Q Consensus       216 ~~~l~~~~~~~~~~~~i-~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~--~g--~~~~i~~~~FfQ~n~~~~~~l~~  290 (457)
                      .+.+.....   .. .+ ..++   +.       ..+..+++|+.++.+++  +|  +.|.+++++|||+|+.+++.|+.
T Consensus       139 ~~~l~~~~~---~~-~i~~~~~---~~-------~~~~~~~~G~~~i~e~~~~~g~~~~~~~~~~~F~Q~n~~~~~~l~~  204 (369)
T 3bt7_A          139 AEALRDALR---AQ-NLNVHLI---GR-------ATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLE  204 (369)
T ss_dssp             HHHHHHHHH---TT-TCEEEEE---EE-------ETTEEEESSCSEEEEECCBTTBCCEEEEETTSCCCSBHHHHHHHHH
T ss_pred             HHHHHHhCc---CC-eeEEEEE---eC-------CCceEEEcCCCEEEEEeccCCceEEEEECCCCeecCCHHHHHHHHH
Confidence            333322100   00 11 1111   11       12356789999888877  67  88999999999999999999999


Q ss_pred             HHHhhCC-CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-
Q 044572          291 KLQKYVP-YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-  368 (457)
Q Consensus       291 ~i~~~~~-~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-  368 (457)
                      ++.+++. .+.+|||+|||+|+|++.+|+.  +.+|+|||++++|++.|++|++.+   +.+|++|+++|+++.+..+. 
T Consensus       205 ~~~~~~~~~~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~n---g~~~v~~~~~d~~~~~~~~~~  279 (369)
T 3bt7_A          205 WALDVTKGSKGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAAN---HIDNVQIIRMAAEEFTQAMNG  279 (369)
T ss_dssp             HHHHHTTTCCSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHT---TCCSEEEECCCSHHHHHHHSS
T ss_pred             HHHHHhhcCCCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHc---CCCceEEEECCHHHHHHHHhh
Confidence            9999875 4688999999999999999974  569999999999999999999984   34689999999987643322 


Q ss_pred             --------------CCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhcccccccc
Q 044572          369 --------------VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKT  434 (457)
Q Consensus       369 --------------~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~  434 (457)
                                    ..||+||+||||.|+..++++.+.   ++++++|+|     |++.+..+++..+..  .  +.-..
T Consensus       280 ~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~~l~---~~g~ivyvs-----c~p~t~ard~~~l~~--~--y~~~~  347 (369)
T 3bt7_A          280 VREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ---AYPRILYIS-----CNPETLCKNLETLSQ--T--HKVER  347 (369)
T ss_dssp             CCCCTTGGGSCGGGCCEEEEEECCCTTCCCHHHHHHHT---TSSEEEEEE-----SCHHHHHHHHHHHHH--H--EEEEE
T ss_pred             ccccccccccccccCCCCEEEECcCccccHHHHHHHHh---CCCEEEEEE-----CCHHHHHHHHHHHhh--C--cEEEE
Confidence                          269999999999999988888775   589999999     999999999887753  1  21111


Q ss_pred             CCCCCCCCCc
Q 044572          435 NSENQSLPQT  444 (457)
Q Consensus       435 ~~~~~~~p~~  444 (457)
                      ....+.+|+|
T Consensus       348 ~~~~D~FP~T  357 (369)
T 3bt7_A          348 LALFDQFPYT  357 (369)
T ss_dssp             EEEECCSTTS
T ss_pred             EEeeccCCCC
Confidence            2234567765

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.97  E-value=9.2e-31  Score=267.80  Aligned_cols=318  Identities=10%  Similarity=0.004  Sum_probs=219.5

Q ss_pred             cccCCCccceeeeeE--Eee------ecCCC-ceEEEeecCc---cceEeCCCCccCChhH----HHHHHHHHHHHHhcC
Q 044572           92 FDSCRLYGWRCRAKL--AVR------GTSTS-PLIGLYQEGT---HNVVDIPHCKAHHPRI----NAAVELLRQGIKELN  155 (457)
Q Consensus        92 ~~s~~~~~YRnR~~l--~v~------~~~g~-~~vGf~~~~s---~~iv~i~~C~i~~p~i----~~~l~~l~~~l~~~~  155 (457)
                      +.++.+|.|||++++  ..+      ..+|+ +..|||.++|   ++|++.++|++..+.+    ++++...++++.+.+
T Consensus        14 ~~~~~pw~y~n~~~~~~~~g~~v~v~~~~g~~l~~g~~~~~s~i~~ri~~~~~~~i~~~~~~~~~~~a~~~r~~~~~~~~   93 (385)
T 2b78_A           14 LKRGVQLLSSRDYPNLNLDNQVVQLYSDADIFLGTAYLSKQNKGVGWLISPKKVSLNVTYFIKLFQWSKDKRKNFAHSKL   93 (385)
T ss_dssp             HHHTCCEEEGGGSTTCCCCSEEEEEECTTCCEEEEEEEEEETTEEEEEEESSCCCCCHHHHHHHHHHHHHTTHHHHHCSS
T ss_pred             HhcCCCeEEHHHhCCCCCCCCEEEEEcCCCCEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence            346778999999988  433      23444 6789999999   6899999999988754    444444477887677


Q ss_pred             CCCcccCCCCC-ceeEEEEEEEeccCCCCccccccCCcEEEEEEeCCCCCCCCCchhHHHHHHHHHHcCCCCCCCceeEE
Q 044572          156 VEPYDEDDRTG-DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHS  234 (457)
Q Consensus       156 ~~~y~~~~~~G-~lr~l~l~vr~~~~~~~~~~~~~~~~v~v~lv~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~s  234 (457)
                      ...|+...+.| .|+++.+.              ..|+++++.+.+...     ....+.+.+.|...      .+.+.+
T Consensus        94 ~~~yr~~~~egd~l~gl~vd--------------~~g~~~vv~~~~~~~-----~~~~~~i~~~l~~~------~~~~~~  148 (385)
T 2b78_A           94 TTAYRLFNQDGDSFGGVTID--------------CYGDFVLFSWYNSFV-----YQIRDEIVAAFRQV------YPNFLG  148 (385)
T ss_dssp             CCEEEEEEGGGGTCTTEEEE--------------EETTEEEEEECSHHH-----HHTHHHHHHHHHHH------STTCSE
T ss_pred             CceEEEEeCCCCCCCceEEE--------------EECCEEEEEECcHHH-----HHhHHHHHHHHHHH------hCCCCE
Confidence            88999888887 58886443              236776665543210     11234555555432      334578


Q ss_pred             EEEEeecCCCCcccCCeEEEeeccC---eEEEeeeeEEEEECCC-----CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEc
Q 044572          235 VWANFQTSTNNVIFGNRWRHLLGET---DFWENVGGIDISLAPS-----SFGQANTRAFDILLRKLQKYVPYGASVTDLY  306 (457)
Q Consensus       235 i~~~~~~~~~~~~~~~~~~~l~G~~---~~~~~~~g~~~~i~~~-----~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~  306 (457)
                      |+.+++...+    +....+++|+.   .+....+|++|.+++.     +|| .|...++.++..   ++.++++|||+|
T Consensus       149 i~~~~~~~~~----~~~~~~l~G~~~~~~~~v~e~g~~f~v~~~~~~~t~ff-~~~~~~~~~~~~---~~~~~~~VLDl~  220 (385)
T 2b78_A          149 AYEKIRFKGI----DNVSAHLYGQEAPEQFLILENGISYNVFLNDGLMTGIF-LDQRQVRNELIN---GSAAGKTVLNLF  220 (385)
T ss_dssp             EEEEECC--------CCEEEEEESCCCSSEEEEETTEEEEECSSSSSCCSSC-GGGHHHHHHHHH---TTTBTCEEEEET
T ss_pred             EEEechhhcC----CccceeecCCCCCceEEEEECCEEEEEeccccccCCcC-CcHHHHHHHHHH---HhcCCCeEEEEe
Confidence            8887665432    55678899985   5644559999999998     999 777777777654   324688999999


Q ss_pred             ccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCC-cEEEEEccCCcCcccc---cCCccEEEECCCCCC
Q 044572          307 AGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDG-NISWHNADNSIEPLSW---LVGSDVLVVDPPRKG  382 (457)
Q Consensus       307 cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~-nv~~~~~d~~~~~~~~---~~~~D~vi~DPPR~G  382 (457)
                      ||+|.+++.+|. .++++|+|||+|+.|++.|++|++.+  +..+ |++|+++|+++.+..+   ...||+||+|||+.+
T Consensus       221 cGtG~~sl~la~-~ga~~V~~vD~s~~al~~A~~N~~~n--~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~  297 (385)
T 2b78_A          221 SYTAAFSVAAAM-GGAMATTSVDLAKRSRALSLAHFEAN--HLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFA  297 (385)
T ss_dssp             CTTTHHHHHHHH-TTBSEEEEEESCTTHHHHHHHHHHHT--TCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-
T ss_pred             eccCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHc--CCCccceEEEECCHHHHHHHHHHhCCCccEEEECCCCCC
Confidence            999999999997 35779999999999999999999984  2333 8999999998765433   247999999999963


Q ss_pred             ----ccHHHH-------HH-HHhcCCCCcEEEEeccCCCCCchh-chhhHHHHHHHhcccccccc------CCCCC---C
Q 044572          383 ----LDSSLV-------HA-LQSIGSAERKAKSLSESSSSMVKE-EKRPWILRAKEASVQIGSKT------NSENQ---S  440 (457)
Q Consensus       383 ----l~~~v~-------~~-l~~~~~~~~ivyvs~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~---~  440 (457)
                          ...+.+       .. ...++ +++++|++     |+... ....|...++.+..+.+...      ..||+   +
T Consensus       298 ~~~~~~~~~~~~~~~ll~~~~~~L~-pgG~l~~~-----~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~D~p~~~~  371 (385)
T 2b78_A          298 RNKKEVFSVSKDYHKLIRQGLEILS-ENGLIIAS-----TNAANMTVSQFKKQIEKGFGKQKHTYLDLQQLPSDFAVNVQ  371 (385)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHTEE-EEEEEEEE-----ECCTTSCHHHHHHHHHHHHTTCCCEEEEEECCCTTSCCCTT
T ss_pred             CChhhHHHHHHHHHHHHHHHHHhcC-CCcEEEEE-----eCCCcCCHHHHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCC
Confidence                222222       22 23444 78888888     44333 34556666666655543222      23664   4


Q ss_pred             CCCceeeeeccc
Q 044572          441 LPQTLIYISCGW  452 (457)
Q Consensus       441 ~p~~~~yl~~~~  452 (457)
                      .|++. |||+.+
T Consensus       372 ~~e~~-yLk~~~  382 (385)
T 2b78_A          372 DESSN-YLKVFT  382 (385)
T ss_dssp             CGGGC-CCEEEE
T ss_pred             CCCCC-CceEEE
Confidence            67777 999754

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.97  E-value=2.7e-30  Score=265.31  Aligned_cols=320  Identities=13%  Similarity=0.071  Sum_probs=220.8

Q ss_pred             cCCCccceeeeeEE-----eee------cCCC-ceEEEeecCc---cceEeCC-CCccCChhHHHHHHHHHHHHHhc--C
Q 044572           94 SCRLYGWRCRAKLA-----VRG------TSTS-PLIGLYQEGT---HNVVDIP-HCKAHHPRINAAVELLRQGIKEL--N  155 (457)
Q Consensus        94 s~~~~~YRnR~~l~-----v~~------~~g~-~~vGf~~~~s---~~iv~i~-~C~i~~p~i~~~l~~l~~~l~~~--~  155 (457)
                      .+.+|.|||++++.     .+.      .+|+ ..+|||.++|   ++|++++ +|++.++.+++.++.+.++++..  +
T Consensus        16 ~g~pw~yrn~i~~~~~~~~~g~~v~v~~~~g~~l~~G~~~~~s~~~~ri~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~   95 (396)
T 2as0_A           16 KGAMIVFKKGVVRVEGDIKPGDIVEVYTRGGKFLGKGFANPNSNIMVRIVTKDKDVEINKDLFKRRIKKANEYRKKVLKY   95 (396)
T ss_dssp             TTCCEEEGGGEEEEESCCCTTCEEEEEETTCCEEEEEEECTTSSEEEEEEESCTTCCCSHHHHHHHHHHHHHHHHHTSCC
T ss_pred             cCCcEEEHHHccccCCCCCCCCEEEEEcCCCCEEEEEEECCCChHHeehhccCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            46689999999987     221      2455 5789999999   8999999 99999999999999999999887  7


Q ss_pred             CCCcccCCCCC-ceeEEEEEEEeccCCCCccccccCCcEEEEEEeCCCCCCCCCchhHHHHHHHHHHcCCCCCCCceeEE
Q 044572          156 VEPYDEDDRTG-DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHS  234 (457)
Q Consensus       156 ~~~y~~~~~~G-~lr~l~l~vr~~~~~~~~~~~~~~~~v~v~lv~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~s  234 (457)
                      ...|+...+.| .|+++.+.              ..|+++++.+.+...     ...++.+++.|...      .+.+.+
T Consensus        96 ~~~yrl~~~~gd~l~gl~vd--------------~~g~~~v~~~~~~~~-----~~~~~~i~~~l~~~------~~~~~~  150 (396)
T 2as0_A           96 TNVYRMVYGEADYLPGLIVD--------------RFNDIASLQISSAGM-----ERFKLDVAEAIMEV------EPGIET  150 (396)
T ss_dssp             CSEEEEEEGGGGTCTTEEEE--------------EETTEEEEEECCHHH-----HTTHHHHHHHHHHH------CTTCCE
T ss_pred             CCeEEEEecCCCCCCcEEEE--------------EECCEEEEEECcHHH-----HHHHHHHHHHHHHh------CCCCCE
Confidence            88898887777 68886443              247787776654210     01244556665532      134578


Q ss_pred             EEEEeecCCCCc--ccCCeEEEeeccC--eEEEeeeeEEEEECCC----CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEc
Q 044572          235 VWANFQTSTNNV--IFGNRWRHLLGET--DFWENVGGIDISLAPS----SFGQANTRAFDILLRKLQKYVPYGASVTDLY  306 (457)
Q Consensus       235 i~~~~~~~~~~~--~~~~~~~~l~G~~--~~~~~~~g~~~~i~~~----~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~  306 (457)
                      |+.+ ++.....  .++....+++|+.  .+....+|++|.+++.    +|||.++...    ..+.+++.++++|||+|
T Consensus       151 i~~~-~~~~~~~~~~~~~~~~~l~g~~~~~~~~~e~g~~~~~~~~~~~tg~f~~~~~~~----~~~~~~~~~~~~VLDl~  225 (396)
T 2as0_A          151 VFEK-NTGRSRRREGLPEIERVLLGKEKYRTIIQEGRAKFIVDMRGQKTGFFLDQRENR----LALEKWVQPGDRVLDVF  225 (396)
T ss_dssp             EEEE-ECSHHHHHTTCCCEEEEEEESCCCEEEEEETTEEEEEESSSSSSCCCSTTHHHH----HHHGGGCCTTCEEEETT
T ss_pred             EEEe-CCcchHhhcCCCcccceecCCCCceEEEEeCCEEEEEeccccccCccCCHHHHH----HHHHHHhhCCCeEEEec
Confidence            8877 4432222  3456778899986  4556679999999985    7999766542    23334444689999999


Q ss_pred             ccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc---cCCccEEEECCCCCCc
Q 044572          307 AGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW---LVGSDVLVVDPPRKGL  383 (457)
Q Consensus       307 cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~---~~~~D~vi~DPPR~Gl  383 (457)
                      ||+|.+++.+|.. ++++|+|||+++.+++.|++|++.+  +..++++|+++|+.+.+..+   ...||+|++|||+.+.
T Consensus       226 ~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n--~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~  302 (396)
T 2as0_A          226 TYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLN--GVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQ  302 (396)
T ss_dssp             CTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHT--TCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCS
T ss_pred             CCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHc--CCCccceEEECCHHHHHHHHHhhCCCCCEEEECCCCCCC
Confidence            9999999999975 5779999999999999999999984  22238999999998765432   3579999999999653


Q ss_pred             c------------HHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHH----Hhccccc--c---ccCCCCC---
Q 044572          384 D------------SSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAK----EASVQIG--S---KTNSENQ---  439 (457)
Q Consensus       384 ~------------~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~----~~~~~~~--~---~~~~~~~---  439 (457)
                      +            .-+.+.+..+++.+.++|++     |+.......|.....    .......  .   ....+|+   
T Consensus       303 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~d~p~~~  377 (396)
T 2as0_A          303 HEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS-----CSQHVDLQMFKDMIIAAGAKAGKFLKMLEPYRTQAPDHPILM  377 (396)
T ss_dssp             SGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE-----CCTTSCHHHHHHHHHHHHHHTTEEEEESSCBBCSCTTSCCBT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE-----CCCCCCHHHHHHHHHHHHHHcCCeEEEEeccCCCCCCCCcCC
Confidence            2            22233334455344466665     665544444444333    3322221  1   1122554   


Q ss_pred             CCCCceeeeeccc
Q 044572          440 SLPQTLIYISCGW  452 (457)
Q Consensus       440 ~~p~~~~yl~~~~  452 (457)
                      ..|++. |||+.+
T Consensus       378 ~~pe~~-yLk~~~  389 (396)
T 2as0_A          378 ASKDTE-YLKCLF  389 (396)
T ss_dssp             TCGGGC-CCEEEE
T ss_pred             CCCCCC-CcEEEE
Confidence            567776 888754

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.97  E-value=5.4e-30  Score=263.04  Aligned_cols=305  Identities=12%  Similarity=0.074  Sum_probs=214.2

Q ss_pred             EEeeecCCC-ceEEEeecCc---cceEeCC-CCccCChhHHHHHHHHHHHHHhc----CCCCcccCCCCC-ceeEEEEEE
Q 044572          106 LAVRGTSTS-PLIGLYQEGT---HNVVDIP-HCKAHHPRINAAVELLRQGIKEL----NVEPYDEDDRTG-DLRYVQMAV  175 (457)
Q Consensus       106 l~v~~~~g~-~~vGf~~~~s---~~iv~i~-~C~i~~p~i~~~l~~l~~~l~~~----~~~~y~~~~~~G-~lr~l~l~v  175 (457)
                      +.|....|+ ..+|||.++|   ++|++++ +|++..+.+++.++...++.+..    +...|+...+.| .|+++.+. 
T Consensus        40 v~v~~~~g~~l~~G~~~~~s~~~~ri~~~~~~~~i~~~~~~~~l~~a~~~~~~~~~~~~~~~yrl~~~egd~l~gl~vd-  118 (396)
T 3c0k_A           40 IDIVDHQGKWLARGAYSPASQIRARVWTFDPSESIDIAFFSRRLQQAQKWRDWLAQKDGLDSYRLIAGESDGLPGITID-  118 (396)
T ss_dssp             EEEECTTCCEEEEEEECTTSSEEEEEEESCTTCCCSHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEGGGGTCTTEEEE-
T ss_pred             EEEEcCCCCEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCceEEE-
Confidence            455545566 5799999999   8999999 99999999999998888877766    788999888888 68986443 


Q ss_pred             EeccCCCCccccccCCcEEEEEEeCCCCCCCCCchhHHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCC--cccCCeEE
Q 044572          176 TTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNN--VIFGNRWR  253 (457)
Q Consensus       176 r~~~~~~~~~~~~~~~~v~v~lv~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~--~~~~~~~~  253 (457)
                                   ..|++|++.+.+...     ...++.+.+.|+...       .+++|+.+ ++....  ...+.+..
T Consensus       119 -------------~~g~~~v~~~~~~~~-----~~~~~~i~~~l~~~~-------~~~~i~~~-~~~~~~~~~g~~~~~~  172 (396)
T 3c0k_A          119 -------------RFGNFLVLQLLSAGA-----EYQRAALISALQTLY-------PECSIYDR-SDVAVRKKEGMELTQG  172 (396)
T ss_dssp             -------------EETTEEEEEECSHHH-----HHTHHHHHHHHHHHC-------TTSEEEEE-ECCTHHHHTTCCCEEE
T ss_pred             -------------EECCEEEEEECCHHH-----HHHHHHHHHHHHHhc-------CCCEEEEe-CCchhHhhcCCCccce
Confidence                         247788776654210     112445666665421       34678876 543333  23455778


Q ss_pred             EeeccC---eEEEeeeeEEEEECCC-----CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEE
Q 044572          254 HLLGET---DFWENVGGIDISLAPS-----SFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSV  325 (457)
Q Consensus       254 ~l~G~~---~~~~~~~g~~~~i~~~-----~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V  325 (457)
                      +|+|+.   .+.++++|++|.+++.     +|||.++....    .+.++ .++++|||+|||+|.+++.+|.. ++++|
T Consensus       173 ~l~G~~~~~~~~~~~~g~~f~v~~~~~~~tgff~~~~~~~~----~l~~~-~~~~~VLDl~cG~G~~sl~la~~-g~~~V  246 (396)
T 3c0k_A          173 PVTGELPPALLPIEEHGMKLLVDIQHGHKTGYYLDQRDSRL----ATRRY-VENKRVLNCFSYTGGFAVSALMG-GCSQV  246 (396)
T ss_dssp             EEESCCCCSSEEEEETTEEEEECTTTSSTTSSCGGGHHHHH----HHHHH-CTTCEEEEESCTTCSHHHHHHHT-TCSEE
T ss_pred             eEcCCCCCceEEEEECCEEEEEeccccccCCcCcCHHHHHH----HHHHh-hCCCeEEEeeccCCHHHHHHHHC-CCCEE
Confidence            899985   6888899999999998     99998876532    23333 46889999999999999999974 46799


Q ss_pred             EEEeCCHHHHHHHHHHHhhCCCCC-CCcEEEEEccCCcCcccc---cCCccEEEECCCCCC------------ccHHHHH
Q 044572          326 KCVEINKESQLSFEKTVSRLPKSV-DGNISWHNADNSIEPLSW---LVGSDVLVVDPPRKG------------LDSSLVH  389 (457)
Q Consensus       326 ~gVE~~~~av~~A~~Na~~~~~~~-~~nv~~~~~d~~~~~~~~---~~~~D~vi~DPPR~G------------l~~~v~~  389 (457)
                      +|||+|+.+++.|++|++.+  +. .++++|+++|+.+.+..+   ...||+||+|||+.+            +..-+.+
T Consensus       247 ~~vD~s~~al~~a~~n~~~n--gl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~  324 (396)
T 3c0k_A          247 VSVDTSQEALDIARQNVELN--KLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINML  324 (396)
T ss_dssp             EEEESCHHHHHHHHHHHHHT--TCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHHHHc--CCCccceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHH
Confidence            99999999999999999984  22 238999999998765432   257999999999843            3333444


Q ss_pred             HHHhcCCCCcEEEEeccCCCCCchhc-hhhHHHHHH----Hhccccc----cccCCCC---CCCCCceeeeeccc
Q 044572          390 ALQSIGSAERKAKSLSESSSSMVKEE-KRPWILRAK----EASVQIG----SKTNSEN---QSLPQTLIYISCGW  452 (457)
Q Consensus       390 ~l~~~~~~~~ivyvs~~~~~c~~~~~-~~~~~~~~~----~~~~~~~----~~~~~~~---~~~p~~~~yl~~~~  452 (457)
                      ++..++ +++++|++     |+.... ...|.....    +....+.    .....+|   ...|++. |||+.+
T Consensus       325 ~~~~Lk-pgG~l~~~-----~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~~~~~~~d~p~~~~~~e~~-yLk~~~  392 (396)
T 3c0k_A          325 AIQLLN-EGGILLTF-----SCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEGL-YLKGFA  392 (396)
T ss_dssp             HHHTEE-EEEEEEEE-----ECCTTCCHHHHHHHHHHHHHHHTCCEEEEEEEECCTTSCEETTCGGGC-CCEEEE
T ss_pred             HHHhcC-CCcEEEEE-----eCCCcCCHHHHHHHHHHHHHHcCCeEEEEEECCCCCCCCCCCCCCCCC-ccEEEE
Confidence            555565 78888887     333322 223444333    3322221    1112355   3567777 998754

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.96  E-value=2.9e-29  Score=256.44  Aligned_cols=313  Identities=16%  Similarity=0.079  Sum_probs=212.1

Q ss_pred             cccCCCccceeeeeE--------EeeecCCC-ceEEEeecCc---cceEeCC-CCccCChhHHHHHHHHHHHHH----hc
Q 044572           92 FDSCRLYGWRCRAKL--------AVRGTSTS-PLIGLYQEGT---HNVVDIP-HCKAHHPRINAAVELLRQGIK----EL  154 (457)
Q Consensus        92 ~~s~~~~~YRnR~~l--------~v~~~~g~-~~vGf~~~~s---~~iv~i~-~C~i~~p~i~~~l~~l~~~l~----~~  154 (457)
                      +..+.+|.|||++++        .|.. +|+ ..+|||.++|   ++|++.+ +|++..+ +.+.+....++.+    +.
T Consensus        13 ~~~~~p~~yrn~~~~~~~~~g~v~v~~-~g~~l~~g~~~~~s~~~~ri~~~~~~~~i~~~-~~~~l~~~~~~r~~~~~~~   90 (382)
T 1wxx_A           13 LLSRHLWVFRRDVVSGPETPGLYPVYW-GRRFLALALYNPHTDLAVRAYRFAPAEDPVAA-LLENLAQALARREAVLRQD   90 (382)
T ss_dssp             HHTTCCEECGGGEEECCSSCEEEEEEE-TTEEEEEEEECTTSSSCEEEEESSCCSCHHHH-HHHHHHHHHHHHHHHHHHC
T ss_pred             HhcCCCeEEhhhhccCCCCCeEEEEEE-CCEEEEEEEECCCCCEEEEEEECCCCCCcCHH-HHHHHHHHHHHHHHHHhcC
Confidence            346778999999999        8876 665 6799999999   8999998 8998877 5444433322222    23


Q ss_pred             CCCCcccCCCCC-ceeEEEEEEEeccCCCCccccccCCcEEEEEEeCCCCCCCCCchhHHHHHHHHHHcCCCCCCCceeE
Q 044572          155 NVEPYDEDDRTG-DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIH  233 (457)
Q Consensus       155 ~~~~y~~~~~~G-~lr~l~l~vr~~~~~~~~~~~~~~~~v~v~lv~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~  233 (457)
                      +...|+...+.| .|+++.+.              ..|++|++++++...     ...++.+++.+.+.      .   .
T Consensus        91 ~~~~yr~~~~~~d~l~~l~vd--------------~~g~~~vv~~~~~~~-----~~~~~~i~~~l~~~------~---~  142 (382)
T 1wxx_A           91 PEGGYRLVHAEGDLLPGLVVD--------------YYAGHAVVQATAHAW-----EGLLPQVAEALRPH------V---Q  142 (382)
T ss_dssp             TTSEEEEEEGGGGTCTTEEEE--------------EETTEEEEEECSHHH-----HTTHHHHHHHHGGG------C---S
T ss_pred             CCCeEEEEeCCCCCCCcEEEE--------------EECCEEEEEECcHHH-----HHHHHHHHHHHHHH------h---h
Confidence            788999888776 68986443              236788877664210     12345566665421      1   6


Q ss_pred             EEEEEeecCCCCc--ccCCeEEEeeccC--eEEEeeeeEEEEECCC-----CCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Q 044572          234 SVWANFQTSTNNV--IFGNRWRHLLGET--DFWENVGGIDISLAPS-----SFGQANTRAFDILLRKLQKYVPYGASVTD  304 (457)
Q Consensus       234 si~~~~~~~~~~~--~~~~~~~~l~G~~--~~~~~~~g~~~~i~~~-----~FfQ~n~~~~~~l~~~i~~~~~~~~~vLD  304 (457)
                      +++.+ ++.....  ..+....+++|+.  .+...++|++|.+++.     +|||.++....    .+.++  ++++|||
T Consensus       143 ~i~~~-~~~~~~~~~~~~~~~~~l~G~~~~~~~~~e~g~~f~i~~~~~~~~g~f~~~~~~~~----~~~~~--~~~~VLD  215 (382)
T 1wxx_A          143 SVLAK-NDARTRELEGLPLYVRPLLGEVPERVQVQEGRVRYLVDLRAGQKTGAYLDQRENRL----YMERF--RGERALD  215 (382)
T ss_dssp             EEEEE-ECCTHHHHTTCCCEEEEEESCCCSEEEEEETTEEEEEECSTTSCCCCCGGGHHHHH----HGGGC--CEEEEEE
T ss_pred             EEEEc-CCchhhhhcCCCcccceecCCCCceEEEEECCEEEEEEchhcccCccccchHHHHH----HHHhc--CCCeEEE
Confidence            78877 5443333  3456778899986  5667789999999987     79997665422    23333  6889999


Q ss_pred             EcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc---cCCccEEEECCCCC
Q 044572          305 LYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW---LVGSDVLVVDPPRK  381 (457)
Q Consensus       305 l~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~---~~~~D~vi~DPPR~  381 (457)
                      +|||+|.+++.+|..  +.+|+|||+|+.+++.|++|++.+   +.++++|+++|+.+.+..+   ...||+|++|||+.
T Consensus       216 lg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n---~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~  290 (382)
T 1wxx_A          216 VFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLN---GLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAF  290 (382)
T ss_dssp             ETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHT---TCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred             eeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHc---CCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCCC
Confidence            999999999999986  569999999999999999999984   3456999999998765432   35799999999996


Q ss_pred             CccH-----------HHHH-HHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccccc--------cccCCCCC--
Q 044572          382 GLDS-----------SLVH-ALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIG--------SKTNSENQ--  439 (457)
Q Consensus       382 Gl~~-----------~v~~-~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~--  439 (457)
                      +.+.           +++. .+..++ +++++++++    |+.......|.........+.+        .....+|+  
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~----~~~~~~~~~~~~~i~~~~~~~g~~~~~i~~~~~~~d~p~~  365 (382)
T 1wxx_A          291 AKGKKDVERAYRAYKEVNLRAIKLLK-EGGILATAS----CSHHMTEPLFYAMVAEAAQDAHRLLRVVEKRGQPFDHPVL  365 (382)
T ss_dssp             CCSTTSHHHHHHHHHHHHHHHHHTEE-EEEEEEEEE----CCTTSCHHHHHHHHHHHHHHTTCCEEEEEEECCCTTSCCB
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEE----CCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCCCCCC
Confidence            6432           2333 333444 666666663    4433333334444333322221        11123553  


Q ss_pred             -CCCCceeeeeccc
Q 044572          440 -SLPQTLIYISCGW  452 (457)
Q Consensus       440 -~~p~~~~yl~~~~  452 (457)
                       ..|++. |||+.+
T Consensus       366 ~~~pe~~-yLk~~~  378 (382)
T 1wxx_A          366 LNHPETH-YLKFAV  378 (382)
T ss_dssp             TTBGGGC-CCEEEE
T ss_pred             CCCCCCC-CcEEEE
Confidence             566776 998754

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.85  E-value=5.9e-21  Score=186.05  Aligned_cols=168  Identities=13%  Similarity=0.017  Sum_probs=127.9

Q ss_pred             ceeEEEEEEeecCCCCcccCCeEEEeeccC--eEEEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcc
Q 044572          230 HYIHSVWANFQTSTNNVIFGNRWRHLLGET--DFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYA  307 (457)
Q Consensus       230 ~~i~si~~~~~~~~~~~~~~~~~~~l~G~~--~~~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~c  307 (457)
                      +.+.+++.+.+ ...+.+.+....+|+|+.  .+ .+.+|++|.+++.+|||.|+..++.+.  +...+.++++|||+||
T Consensus        53 ~~~~~v~~~~~-~~~~~~~~~~~~~l~G~~~~~~-~~e~g~~f~~~~~~~f~~~~~~~e~~~--~~~~~~~~~~VLDlgc  128 (272)
T 3a27_A           53 TKCKAILLYTT-QITGEFRTPHVKILYGKETETI-HKEYGCLFKLDVAKIMWSQGNIEERKR--MAFISNENEVVVDMFA  128 (272)
T ss_dssp             --CCSEEEEC-----------CCEEEECSCCEEE-EEETTEEEEEETTTSCCCGGGHHHHHH--HHTSCCTTCEEEETTC
T ss_pred             CCceEEEEcCC-CCCCcccccceEEEeCCCcEEE-EEECCEEEEEechhEEECCCchHHHHH--HHHhcCCCCEEEEecC
Confidence            56778888765 233344456788999987  22 345899999999999999998887765  3444567899999999


Q ss_pred             cccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHH
Q 044572          308 GAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSL  387 (457)
Q Consensus       308 G~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v  387 (457)
                      |+|.+++.+|+..+..+|+|||+++.|++.|++|++.+   +..|+.++++|+.+. .. ...||+|++|||+ ++..-+
T Consensus       129 G~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n---~l~~~~~~~~d~~~~-~~-~~~~D~Vi~d~p~-~~~~~l  202 (272)
T 3a27_A          129 GIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLN---KLNNVIPILADNRDV-EL-KDVADRVIMGYVH-KTHKFL  202 (272)
T ss_dssp             TTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHT---TCSSEEEEESCGGGC-CC-TTCEEEEEECCCS-SGGGGH
T ss_pred             cCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCCEEEEECChHHc-Cc-cCCceEEEECCcc-cHHHHH
Confidence            99999999998755669999999999999999999984   346899999999886 33 4579999999998 665545


Q ss_pred             HHHHHhcCCCCcEEEEeccCCCCCch
Q 044572          388 VHALQSIGSAERKAKSLSESSSSMVK  413 (457)
Q Consensus       388 ~~~l~~~~~~~~ivyvs~~~~~c~~~  413 (457)
                      .+.+..++ +++++|++     |+..
T Consensus       203 ~~~~~~Lk-pgG~l~~s-----~~~~  222 (272)
T 3a27_A          203 DKTFEFLK-DRGVIHYH-----ETVA  222 (272)
T ss_dssp             HHHHHHEE-EEEEEEEE-----EEEE
T ss_pred             HHHHHHcC-CCCEEEEE-----EcCc
Confidence            55566665 88999998     7766

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.79  E-value=5e-18  Score=170.25  Aligned_cols=187  Identities=12%  Similarity=0.112  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccCe--EEEeeeeEEEEECCCCCCCCCHHHHHHHH
Q 044572          212 LESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETD--FWENVGGIDISLAPSSFGQANTRAFDILL  289 (457)
Q Consensus       212 ~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~--~~~~~~g~~~~i~~~~FfQ~n~~~~~~l~  289 (457)
                      .+.+++.+...      .+. .+++.+.+. ......+....+++|+..  ...+.+|++|.+++..|||.+..+++.+ 
T Consensus       117 ~~~i~~~l~~~------~~~-~~v~~~~~~-~~g~~r~~~~~~l~G~~~~~~~~~e~g~~f~~d~~~~~~~~~~~~er~-  187 (336)
T 2yx1_A          117 RKEIGELAYKL------IPC-KGVFRRKSE-VKGEFRVRELEHLAGENRTLTIHKENGYRLWVDIAKVYFSPRLGGERA-  187 (336)
T ss_dssp             HHHHHHHHHHH------SCC-SEEEEEC--------CCCCEEEEEECCCCEEEEEETTEEEEEETTTSCCCGGGHHHHH-
T ss_pred             HHHHHHHHHHH------CCC-cEEEEcCCC-CCCcccccceEEEeCCCCcEEEEEECCEEEEEehHHhccCCccHHHHH-
Confidence            45566666543      233 577765422 233345567788999853  3456689999999999999998888876 


Q ss_pred             HHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccC
Q 044572          290 RKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLV  369 (457)
Q Consensus       290 ~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~  369 (457)
                       .+.+++.++.+|||+|||+|.+++. |+  ++.+|+|||+|+.|++.|++|++.+  +..++++++++|+.+.+    .
T Consensus       188 -~i~~~~~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n--~l~~~v~~~~~D~~~~~----~  257 (336)
T 2yx1_A          188 -RIMKKVSLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLN--KLEHKIIPILSDVREVD----V  257 (336)
T ss_dssp             -HHHHHCCTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEESCGGGCC----C
T ss_pred             -HHHHhcCCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEECChHHhc----C
Confidence             4556666789999999999999999 86  4679999999999999999999984  33368999999998865    6


Q ss_pred             CccEEEECCCCCCccHHHHHHHHh-cCCCCcEEEEeccCCCCCchhchhhHHHHHHHh
Q 044572          370 GSDVLVVDPPRKGLDSSLVHALQS-IGSAERKAKSLSESSSSMVKEEKRPWILRAKEA  426 (457)
Q Consensus       370 ~~D~vi~DPPR~Gl~~~v~~~l~~-~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~  426 (457)
                      .||+|++|||+.+.  ++++.+.. +++.+.+++.+     |++.  ...+.+.+...
T Consensus       258 ~fD~Vi~dpP~~~~--~~l~~~~~~L~~gG~l~~~~-----~~~~--~~~~~~~l~~~  306 (336)
T 2yx1_A          258 KGNRVIMNLPKFAH--KFIDKALDIVEEGGVIHYYT-----IGKD--FDKAIKLFEKK  306 (336)
T ss_dssp             CEEEEEECCTTTGG--GGHHHHHHHEEEEEEEEEEE-----EESS--SHHHHHHHHHH
T ss_pred             CCcEEEECCcHhHH--HHHHHHHHHcCCCCEEEEEE-----eecC--chHHHHHHHHh
Confidence            79999999998765  35555444 44344455555     5554  44555555544

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.77  E-value=1e-17  Score=163.58  Aligned_cols=161  Identities=17%  Similarity=0.112  Sum_probs=115.2

Q ss_pred             eEEEEEEeecCCCCcccCCeEEEeeccCeEEE-eeeeEEEEECC--CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEccc
Q 044572          232 IHSVWANFQTSTNNVIFGNRWRHLLGETDFWE-NVGGIDISLAP--SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAG  308 (457)
Q Consensus       232 i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~-~~~g~~~~i~~--~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG  308 (457)
                      +.+++.+ +. ......+.+..+++|+....+ .++|++|.++.  ..|+|.|+...+.+.+    ++.++++|||+|||
T Consensus        62 ~~~i~~~-~~-~~~~~~~~~~~~l~G~~~~~~~~e~g~~f~~d~~~~~f~~~~~~~~~~l~~----~~~~~~~VLDlgcG  135 (278)
T 2frn_A           62 VKTVLRK-GH-IHGETRKPDYELLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERVRMAK----VAKPDELVVDMFAG  135 (278)
T ss_dssp             CSEEEEC-C-----------CEEEECSCCEEEEEETTEEEEEETTTSCCCGGGHHHHHHHHH----HCCTTCEEEETTCT
T ss_pred             CCEEEEe-CC-ccCCccccceEEEECCCCEEEEEECCEEEEEEccceeEcCCcHHHHHHHHH----hCCCCCEEEEeccc
Confidence            4677765 32 223344567788999876544 68999999975  6799999888766654    35568999999999


Q ss_pred             ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHH
Q 044572          309 AGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLV  388 (457)
Q Consensus       309 ~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~  388 (457)
                      +|.+++.+|+.+ +.+|+|||+|+.|++.|++|++.+  +..++++++++|+.+...  ...||+|++|||... ..-+.
T Consensus       136 ~G~~~~~la~~~-~~~V~~vD~s~~~~~~a~~n~~~n--~~~~~v~~~~~D~~~~~~--~~~fD~Vi~~~p~~~-~~~l~  209 (278)
T 2frn_A          136 IGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLN--KVEDRMSAYNMDNRDFPG--ENIADRILMGYVVRT-HEFIP  209 (278)
T ss_dssp             TTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHT--TCTTTEEEECSCTTTCCC--CSCEEEEEECCCSSG-GGGHH
T ss_pred             CCHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHHc--CCCceEEEEECCHHHhcc--cCCccEEEECCchhH-HHHHH
Confidence            999999999864 348999999999999999999984  333469999999988764  467999999999532 22233


Q ss_pred             HHHHhcCCCCcEEEEe
Q 044572          389 HALQSIGSAERKAKSL  404 (457)
Q Consensus       389 ~~l~~~~~~~~ivyvs  404 (457)
                      +....+++.+.+++.+
T Consensus       210 ~~~~~LkpgG~l~~~~  225 (278)
T 2frn_A          210 KALSIAKDGAIIHYHN  225 (278)
T ss_dssp             HHHHHEEEEEEEEEEE
T ss_pred             HHHHHCCCCeEEEEEE
Confidence            3444565444555554

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.75  E-value=7.5e-18  Score=172.28  Aligned_cols=186  Identities=16%  Similarity=0.166  Sum_probs=126.4

Q ss_pred             eEEEeeccC--eEEEeeeeEEEEECCC-----CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCC
Q 044572          251 RWRHLLGET--DFWENVGGIDISLAPS-----SFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCR  323 (457)
Q Consensus       251 ~~~~l~G~~--~~~~~~~g~~~~i~~~-----~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~  323 (457)
                      ...+++|+.  .+..+++|++|.++..     +||..++....    .+..++.+|++|||+|||+|.+++.+|.. ++.
T Consensus       164 ~~~~l~G~~~~~~~v~E~g~~f~vd~~~~~~tG~f~dqr~~r~----~l~~~~~~g~~VLDlg~GtG~~sl~~a~~-ga~  238 (393)
T 4dmg_A          164 RVGVVYGEVPEVLEVEEDGLRFPIPLALAQKTGYYLDQRENRR----LFEAMVRPGERVLDVYSYVGGFALRAARK-GAY  238 (393)
T ss_dssp             CCEEEEECCCSEEEEEETTEEEEEETTTCCTTSSCGGGHHHHH----HHHTTCCTTCEEEEESCTTTHHHHHHHHT-TCE
T ss_pred             ccceEecCCCCcEEEEECCEEEEEechhccccCcCCCHHHHHH----HHHHHhcCCCeEEEcccchhHHHHHHHHc-CCe
Confidence            467788874  3555779999999864     48887665532    23344545899999999999999999974 554


Q ss_pred             EEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCcc-----------HHHHHH-H
Q 044572          324 SVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLD-----------SSLVHA-L  391 (457)
Q Consensus       324 ~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~-----------~~v~~~-l  391 (457)
                       |++||+|+.|++.|++|++.|+  . . .++.++|+++.+....+.||+|++|||....+           .++++. +
T Consensus       239 -V~avDis~~al~~a~~n~~~ng--~-~-~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~  313 (393)
T 4dmg_A          239 -ALAVDKDLEALGVLDQAALRLG--L-R-VDIRHGEALPTLRGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREAL  313 (393)
T ss_dssp             -EEEEESCHHHHHHHHHHHHHHT--C-C-CEEEESCHHHHHHTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHH
T ss_pred             -EEEEECCHHHHHHHHHHHHHhC--C-C-CcEEEccHHHHHHHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence             9999999999999999999843  2 2 25679999876544334599999999974321           123333 3


Q ss_pred             HhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccccccc--------cCCCC---CCCCCceeeeeccc
Q 044572          392 QSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSK--------TNSEN---QSLPQTLIYISCGW  452 (457)
Q Consensus       392 ~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~---~~~p~~~~yl~~~~  452 (457)
                      ..+++.+.+++++     |++......|......+..+.+..        ...+|   ..+|++. |||+.+
T Consensus       314 ~~LkpGG~Lv~~s-----~s~~~~~~~f~~~v~~a~~~~g~~~~i~~~~~~~~DhP~~~~~pe~~-yLK~~~  379 (393)
T 4dmg_A          314 RLLAEEGFLWLSS-----CSYHLRLEDLLEVARRAAADLGRRLRVHRVTYQPEDHPWSLHIPESL-YLKTLV  379 (393)
T ss_dssp             HTEEEEEEEEEEE-----CCTTSCHHHHHHHHHHHHHHHTCCEEEEEEEECCTTSCEETTCGGGC-CCEEEE
T ss_pred             HhcCCCCEEEEEE-----CCCCCCHHHHHHHHHHHHHHhCCeEEEEEEcCCCCCCCcCCCCCCcC-CcEEEE
Confidence            3455455566676     777666555555554444322211        12355   4667777 999754

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.71  E-value=1.1e-16  Score=160.08  Aligned_cols=173  Identities=16%  Similarity=0.124  Sum_probs=118.6

Q ss_pred             EEEeecc----CeEEEeeeeEEEEECCCCCCCC--CHHHHH---HHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCC
Q 044572          252 WRHLLGE----TDFWENVGGIDISLAPSSFGQA--NTRAFD---ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKC  322 (457)
Q Consensus       252 ~~~l~G~----~~~~~~~~g~~~~i~~~~FfQ~--n~~~~~---~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~  322 (457)
                      ..+++|+    ..+...++|++|.+++..|++.  +.++.+   .+.+.+.+ ..++.+|||+|||+|.+++.+|.. ++
T Consensus        99 ~~~~~g~~~~~~~~~i~e~g~~f~v~~~~~~~tg~f~dq~~~~~~l~~~~~~-~~~~~~VLDlgcGtG~~sl~la~~-ga  176 (332)
T 2igt_A           99 GRWRFPKEALGETWPLSLLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVET-ADRPLKVLNLFGYTGVASLVAAAA-GA  176 (332)
T ss_dssp             EEEECSSSCCCSEEEEEETTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHH-SSSCCEEEEETCTTCHHHHHHHHT-TC
T ss_pred             cceEecCCCCCCceEEEECCEEEEEecCccccceechHHHHHHHHHHHHHHh-cCCCCcEEEcccccCHHHHHHHHc-CC
Confidence            3677874    3445567999999999888776  333332   34443332 235789999999999999999974 55


Q ss_pred             CEEEEEeCCHHHHHHHHHHHhhCCCCCCC-cEEEEEccCCcCcccc---cCCccEEEECCCCCCcc------------HH
Q 044572          323 RSVKCVEINKESQLSFEKTVSRLPKSVDG-NISWHNADNSIEPLSW---LVGSDVLVVDPPRKGLD------------SS  386 (457)
Q Consensus       323 ~~V~gVE~~~~av~~A~~Na~~~~~~~~~-nv~~~~~d~~~~~~~~---~~~~D~vi~DPPR~Gl~------------~~  386 (457)
                       +|++||+|+.|++.|++|++.++  ..+ +++++++|+++.+...   ...||+||+|||+.+.+            .+
T Consensus       177 -~V~~VD~s~~al~~a~~n~~~~g--l~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~  253 (332)
T 2igt_A          177 -EVTHVDASKKAIGWAKENQVLAG--LEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPL  253 (332)
T ss_dssp             -EEEEECSCHHHHHHHHHHHHHHT--CTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHH
T ss_pred             -EEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHH
Confidence             99999999999999999998842  222 5999999998765432   35799999999986543            23


Q ss_pred             HHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhcccccc
Q 044572          387 LVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGS  432 (457)
Q Consensus       387 v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~~  432 (457)
                      +++.+.++-.+++++++++   .|........|..++.++..+.+.
T Consensus       254 ll~~~~~~LkpgG~lli~~---~~~~~~~~~~~~~~l~~a~~~~g~  296 (332)
T 2igt_A          254 MLDICREILSPKALGLVLT---AYSIRASFYSMHELMRETMRGAGG  296 (332)
T ss_dssp             HHHHHHHTBCTTCCEEEEE---ECCTTSCHHHHHHHHHHHTTTSCS
T ss_pred             HHHHHHHhcCcCcEEEEEE---CCCCCCCHHHHHHHHHHHHHHcCC
Confidence            4444434333555544431   144444556677777766655543

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.69  E-value=2.6e-16  Score=153.26  Aligned_cols=144  Identities=19%  Similarity=0.125  Sum_probs=109.7

Q ss_pred             CeEEEeeccCeEEE-eeeeEEEEECC--CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEE
Q 044572          250 NRWRHLLGETDFWE-NVGGIDISLAP--SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVK  326 (457)
Q Consensus       250 ~~~~~l~G~~~~~~-~~~g~~~~i~~--~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~  326 (457)
                      ..+++|+|+...++ +.+|++|.+++  ..|++.|.....+    +.+.+.+|++|||+|||+|.||+.+|+. ++.+|+
T Consensus        78 ~~~e~L~G~~~~~~~~E~G~~~~~D~~k~~f~~~~~~er~r----i~~~~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~  152 (278)
T 3k6r_A           78 PDYELLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERVR----MAKVAKPDELVVDMFAGIGHLSLPIAVY-GKAKVI  152 (278)
T ss_dssp             --CEEEECSCCEEEEEETTEEEEEETTTSCCCGGGHHHHHH----HHHHCCTTCEEEETTCTTTTTTHHHHHH-TCCEEE
T ss_pred             ccceEEecCCcEEEEEECCEEEEEeccceEEcCCcHHHHHH----HHHhcCCCCEEEEecCcCcHHHHHHHHh-cCCeEE
Confidence            35678999876554 67899999986  5788887766544    4445678999999999999999999985 457999


Q ss_pred             EEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          327 CVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       327 gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+|+|+.|++.+++|++.|  +..++++++++|+.++..  ...||.|++|||.... .-+-.++..++ +++++++-
T Consensus       153 avD~np~a~~~~~~N~~~N--~v~~~v~~~~~D~~~~~~--~~~~D~Vi~~~p~~~~-~~l~~a~~~lk-~gG~ih~~  224 (278)
T 3k6r_A          153 AIEKDPYTFKFLVENIHLN--KVEDRMSAYNMDNRDFPG--ENIADRILMGYVVRTH-EFIPKALSIAK-DGAIIHYH  224 (278)
T ss_dssp             EECCCHHHHHHHHHHHHHT--TCTTTEEEECSCTTTCCC--CSCEEEEEECCCSSGG-GGHHHHHHHEE-EEEEEEEE
T ss_pred             EEECCHHHHHHHHHHHHHc--CCCCcEEEEeCcHHHhcc--ccCCCEEEECCCCcHH-HHHHHHHHHcC-CCCEEEEE
Confidence            9999999999999999985  445679999999988654  3579999999986532 22333444454 66666553

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.68  E-value=7.6e-17  Score=164.27  Aligned_cols=137  Identities=12%  Similarity=0.110  Sum_probs=107.0

Q ss_pred             eeeeEEEEEC---------CCCCCCCCHHHHHHHHHHHHhhC----CCCCeEEEEcccccHHHHHHHhh-CCCCEEEEEe
Q 044572          264 NVGGIDISLA---------PSSFGQANTRAFDILLRKLQKYV----PYGASVTDLYAGAGVIGLSLAAA-RKCRSVKCVE  329 (457)
Q Consensus       264 ~~~g~~~~i~---------~~~FfQ~n~~~~~~l~~~i~~~~----~~~~~vLDl~cG~G~~sl~lA~~-~~~~~V~gVE  329 (457)
                      +++|.+|.++         .++|||.|...+..++..+.+..    .+|.+|||+|||+|.+|+.+|.. .++++|++||
T Consensus         5 ~E~g~~~~v~~~~~~~~~~~~~Ffn~~~~~nR~l~~~~~~~~~~~~~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avD   84 (392)
T 3axs_A            5 QEGIAKIIVPEIPKTVSSDMPVFYNPRMRVNRDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYAND   84 (392)
T ss_dssp             EETTEEEEECCCCSSCCTTCCSSCCGGGHHHHHHHHHHHHHHHHHHCSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEEC
T ss_pred             EECCEEEEEecccccccCCCCEEEcCCcHHHHHHHHHHHHHHhhccCCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEE
Confidence            4678889884         46899999888888765554432    24789999999999999999985 3567999999


Q ss_pred             CCHHHHHHHHHHHhhCCCCCCCc-EEEEEccCCcCcc-cccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          330 INKESQLSFEKTVSRLPKSVDGN-ISWHNADNSIEPL-SWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       330 ~~~~av~~A~~Na~~~~~~~~~n-v~~~~~d~~~~~~-~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +++++++.+++|++.|  +..++ ++++++|+.+.+. .+...||+|++||+  |...++++....+-.+++++|++
T Consensus        85 i~~~av~~~~~N~~~N--gl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lDP~--g~~~~~l~~a~~~Lk~gGll~~t  157 (392)
T 3axs_A           85 ISSKAIEIMKENFKLN--NIPEDRYEIHGMEANFFLRKEWGFGFDYVDLDPF--GTPVPFIESVALSMKRGGILSLT  157 (392)
T ss_dssp             SCHHHHHHHHHHHHHT--TCCGGGEEEECSCHHHHHHSCCSSCEEEEEECCS--SCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHh--CCCCceEEEEeCCHHHHHHHhhCCCCcEEEECCC--cCHHHHHHHHHHHhCCCCEEEEE
Confidence            9999999999999984  23334 9999999988765 44457999999994  44445666555533478899998

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.64  E-value=2.2e-15  Score=137.75  Aligned_cols=136  Identities=22%  Similarity=0.266  Sum_probs=105.2

Q ss_pred             eeeEEEEECCCCCCCCCHHHHHHHHHHHHhhC-CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHh
Q 044572          265 VGGIDISLAPSSFGQANTRAFDILLRKLQKYV-PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS  343 (457)
Q Consensus       265 ~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~-~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~  343 (457)
                      ..|.++.+++.++.+......+.+++.+.... .++.+|||+|||+|.+++.++. .++.+|+|||+|+++++.|++|++
T Consensus        10 ~~g~~l~~~~~~~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~   88 (189)
T 3p9n_A           10 AGGRRIAVPPRGTRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALS-RGAASVLFVESDQRSAAVIARNIE   88 (189)
T ss_dssp             TTTCEEECCSCCC---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHH-TTCSEEEEEECCHHHHHHHHHHHH
T ss_pred             cCCcEecCCCCCCccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHH-CCCCeEEEEECCHHHHHHHHHHHH
Confidence            34777888888888888888888888877653 2688999999999999998886 456799999999999999999998


Q ss_pred             hCCCCCCCcEEEEEccCCcCcccc-cCCccEEEECCCCCCc---cHHHHHHHHh--cCCCCcEEEEe
Q 044572          344 RLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVVDPPRKGL---DSSLVHALQS--IGSAERKAKSL  404 (457)
Q Consensus       344 ~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~DPPR~Gl---~~~v~~~l~~--~~~~~~ivyvs  404 (457)
                      .++   .++++++++|+.+..... .+.||+|++|||+...   ..++++.+.+  +-.+++++++.
T Consensus        89 ~~~---~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~  152 (189)
T 3p9n_A           89 ALG---LSGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVE  152 (189)
T ss_dssp             HHT---CSCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEE
T ss_pred             HcC---CCceEEEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEE
Confidence            742   368999999998764332 3679999999998764   2346666665  44578888876

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.62  E-value=1.2e-15  Score=155.04  Aligned_cols=139  Identities=12%  Similarity=0.043  Sum_probs=106.3

Q ss_pred             EeeeeEEEEECC-------CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHH
Q 044572          263 ENVGGIDISLAP-------SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ  335 (457)
Q Consensus       263 ~~~~g~~~~i~~-------~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av  335 (457)
                      .++++.+|.++.       ..|||.+......+...+.+.. ++.+|||+|||+|.+|+.+|...+..+|+++|++++++
T Consensus         6 ~~Eg~~~~~~p~~~~~~~~~~F~np~~~~nr~l~~~~l~~~-~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av   84 (378)
T 2dul_A            6 VQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNIL-NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAY   84 (378)
T ss_dssp             EEETTEEEEEC--------CCCCCGGGHHHHHHHHHHHHHH-CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHH
T ss_pred             EEeCcEEEEecCccccCCCCceeCCchHHHHHHHHHHHHHc-CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHH
Confidence            356788888865       7999988877776655555544 68999999999999999999875667899999999999


Q ss_pred             HHHHHHHhhCCCC------------CCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          336 LSFEKTVSRLPKS------------VDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       336 ~~A~~Na~~~~~~------------~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      +.|++|++.|...            +.++++++++|+.+.+..+...||+|++|||...  .++++.......+++++|+
T Consensus        85 ~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~~~~fD~I~lDP~~~~--~~~l~~a~~~lk~gG~l~v  162 (378)
T 2dul_A           85 ELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDPFGSP--MEFLDTALRSAKRRGILGV  162 (378)
T ss_dssp             HHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEECCSSCC--HHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhccCCCCEEEeCCCCCH--HHHHHHHHHhcCCCCEEEE
Confidence            9999999984100            3345999999998765433357999999998543  4566655443347889999


Q ss_pred             e
Q 044572          404 L  404 (457)
Q Consensus       404 s  404 (457)
                      +
T Consensus       163 t  163 (378)
T 2dul_A          163 T  163 (378)
T ss_dssp             E
T ss_pred             E
Confidence            8

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.60  E-value=1.4e-14  Score=141.81  Aligned_cols=133  Identities=13%  Similarity=0.120  Sum_probs=106.6

Q ss_pred             eeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHH
Q 044572          264 NVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT  341 (457)
Q Consensus       264 ~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~N  341 (457)
                      .+.|..|.++++.|+  ++..++.+++.+.+++.  ++.+|||+|||+|.+++.++.. +..+|+|||+|++|++.|++|
T Consensus        89 ~f~~~~~~v~~~~li--pr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n  165 (284)
T 1nv8_A           89 EFMGLSFLVEEGVFV--PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKN  165 (284)
T ss_dssp             EETTEEEECCTTSCC--CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHH
T ss_pred             EECCeEEEeCCCcee--cChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence            457899999999997  46677888888877654  5689999999999999999987 556999999999999999999


Q ss_pred             HhhCCCCCCCcEEEEEccCCcCcccccCCc---cEEEECCCCCCccH---------------------HHHHHHH-hcCC
Q 044572          342 VSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDS---------------------SLVHALQ-SIGS  396 (457)
Q Consensus       342 a~~~~~~~~~nv~~~~~d~~~~~~~~~~~~---D~vi~DPPR~Gl~~---------------------~v~~~l~-~~~~  396 (457)
                      ++.+  +..++++|+++|+.+.+.   +.|   |+|+.|||+.+...                     .+++.+. ...+
T Consensus       166 ~~~~--~l~~~v~~~~~D~~~~~~---~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~  240 (284)
T 1nv8_A          166 AERH--GVSDRFFVRKGEFLEPFK---EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDT  240 (284)
T ss_dssp             HHHT--TCTTSEEEEESSTTGGGG---GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCC
T ss_pred             HHHc--CCCCceEEEECcchhhcc---cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCC
Confidence            9984  233459999999987542   367   99999999876432                     4566666 5545


Q ss_pred             CCcEEEEe
Q 044572          397 AERKAKSL  404 (457)
Q Consensus       397 ~~~ivyvs  404 (457)
                      +++.+++.
T Consensus       241 pgG~l~~e  248 (284)
T 1nv8_A          241 SGKIVLME  248 (284)
T ss_dssp             TTCEEEEE
T ss_pred             CCCEEEEE
Confidence            77777776

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.59  E-value=5.8e-15  Score=161.39  Aligned_cols=137  Identities=13%  Similarity=0.031  Sum_probs=100.4

Q ss_pred             eEEEeeeeEEEEECCC-----CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHH
Q 044572          260 DFWENVGGIDISLAPS-----SFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES  334 (457)
Q Consensus       260 ~~~~~~~g~~~~i~~~-----~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~a  334 (457)
                      .+....+|++|.+++.     +||..++....    .+..+. +|++|||+|||+|.+++.+|. .++.+|++||+|+.|
T Consensus       501 ~~~v~E~g~~~~v~~~~~~~tG~f~d~r~~r~----~l~~~~-~g~~VLDlg~GtG~~sl~aa~-~ga~~V~aVD~s~~a  574 (703)
T 3v97_A          501 FLEVTEYNAHLWVNLTDYLDTGLFLDHRIARR----MLGQMS-KGKDFLNLFSYTGSATVHAGL-GGARSTTTVDMSRTY  574 (703)
T ss_dssp             CEEEEETTEEEEECSSSSSSCSCCGGGHHHHH----HHHHHC-TTCEEEEESCTTCHHHHHHHH-TTCSEEEEEESCHHH
T ss_pred             eEEEEECCEEEEEeccccccCCCcccHHHHHH----HHHHhc-CCCcEEEeeechhHHHHHHHH-CCCCEEEEEeCCHHH
Confidence            3555678999999865     46665554322    223333 689999999999999999997 567899999999999


Q ss_pred             HHHHHHHHhhCCCCCC-CcEEEEEccCCcCcccccCCccEEEECCCCCCccH-------------HHHHHHHhcCCCCcE
Q 044572          335 QLSFEKTVSRLPKSVD-GNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDS-------------SLVHALQSIGSAERK  400 (457)
Q Consensus       335 v~~A~~Na~~~~~~~~-~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~-------------~v~~~l~~~~~~~~i  400 (457)
                      ++.|++|++.|+  .. ++++++++|+++++......||+||+|||..+.+.             +++..+.++-.++++
T Consensus       575 l~~a~~N~~~ng--l~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~  652 (703)
T 3v97_A          575 LEWAERNLRLNG--LTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGT  652 (703)
T ss_dssp             HHHHHHHHHHTT--CCSTTEEEEESCHHHHHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEE
T ss_pred             HHHHHHHHHHcC--CCccceEEEecCHHHHHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcE
Confidence            999999999843  32 48999999998865544467999999999754222             233333333347777


Q ss_pred             EEEe
Q 044572          401 AKSL  404 (457)
Q Consensus       401 vyvs  404 (457)
                      +++|
T Consensus       653 L~~s  656 (703)
T 3v97_A          653 IMFS  656 (703)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7787

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.57  E-value=4.6e-15  Score=137.67  Aligned_cols=132  Identities=20%  Similarity=0.282  Sum_probs=93.8

Q ss_pred             eEEEEECCCCCC-CCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhC
Q 044572          267 GIDISLAPSSFG-QANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL  345 (457)
Q Consensus       267 g~~~~i~~~~Ff-Q~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~  345 (457)
                      |..+...++..+ .......+.+++.+.... ++.+|||+|||+|.+++.++.. ++.+|+|||+|+.+++.|++|++.+
T Consensus        23 g~~l~~~~~~~~rp~~~~~~~~l~~~l~~~~-~~~~vLDlgcG~G~~~~~l~~~-~~~~V~~vD~s~~~l~~a~~~~~~~  100 (202)
T 2fpo_A           23 GRKLPVPDSPGLRPTTDRVRETLFNWLAPVI-VDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATL  100 (202)
T ss_dssp             TCEEECCCC------CHHHHHHHHHHHHHHH-TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHT
T ss_pred             CcEecCCCCCCCCCCHHHHHHHHHHHHHhhc-CCCeEEEeCCCcCHHHHHHHhc-CCCEEEEEECCHHHHHHHHHHHHHc
Confidence            455555443222 122333344444433221 5789999999999999987764 4579999999999999999999884


Q ss_pred             CCCCCCcEEEEEccCCcCcccccCCccEEEECCC-CCCccHHHHHHHHh---cCCCCcEEEEe
Q 044572          346 PKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPP-RKGLDSSLVHALQS---IGSAERKAKSL  404 (457)
Q Consensus       346 ~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPP-R~Gl~~~v~~~l~~---~~~~~~ivyvs  404 (457)
                      +   .++++++++|+.+.+......||+|++||| +.+...++++.+.+   ++ ++++++++
T Consensus       101 ~---~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~-pgG~l~i~  159 (202)
T 2fpo_A          101 K---AGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLA-DEALIYVE  159 (202)
T ss_dssp             T---CCSEEEECSCHHHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEE-EEEEEEEE
T ss_pred             C---CCcEEEEECCHHHHHhhcCCCCCEEEECCCCCCCcHHHHHHHHHhcCccC-CCcEEEEE
Confidence            2   368999999987754333357999999999 55666678888876   54 78888887

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.51  E-value=1.1e-13  Score=124.33  Aligned_cols=144  Identities=8%  Similarity=0.028  Sum_probs=103.7

Q ss_pred             EEEECCCCCCCCC--HHHHHHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          269 DISLAPSSFGQAN--TRAFDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       269 ~~~i~~~~FfQ~n--~~~~~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      +|.+++..|+|.+  +...+.+.+.+.+.+  .++.+|||+|||+|.+++.++.  ...+|+|+|+++.+++.|++|++.
T Consensus         2 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~   79 (183)
T 2yxd_A            2 KYMIPDEEFIRREGVPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAK   79 (183)
T ss_dssp             --CCCSTTSCCBTTBCCCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHH
T ss_pred             CccCCchheeeccCCCcCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHH
Confidence            5778889999887  434444445544443  3678999999999999999997  356999999999999999999987


Q ss_pred             CCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHH
Q 044572          345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAK  424 (457)
Q Consensus       345 ~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~  424 (457)
                      +   +..+++++++|+.+.+.  .+.||+|+++++  .....+++.+.++ +.+.+++..     +. ......+...+.
T Consensus        80 ~---~~~~~~~~~~d~~~~~~--~~~~D~i~~~~~--~~~~~~l~~~~~~-~gG~l~~~~-----~~-~~~~~~~~~~l~  145 (183)
T 2yxd_A           80 F---NIKNCQIIKGRAEDVLD--KLEFNKAFIGGT--KNIEKIIEILDKK-KINHIVANT-----IV-LENAAKIINEFE  145 (183)
T ss_dssp             T---TCCSEEEEESCHHHHGG--GCCCSEEEECSC--SCHHHHHHHHHHT-TCCEEEEEE-----SC-HHHHHHHHHHHH
T ss_pred             c---CCCcEEEEECCcccccc--CCCCcEEEECCc--ccHHHHHHHHhhC-CCCEEEEEe-----cc-cccHHHHHHHHH
Confidence            4   23689999999877322  257999999999  3345678888888 445555543     33 333455666666


Q ss_pred             Hhcc
Q 044572          425 EASV  428 (457)
Q Consensus       425 ~~~~  428 (457)
                      +.+.
T Consensus       146 ~~g~  149 (183)
T 2yxd_A          146 SRGY  149 (183)
T ss_dssp             HTTC
T ss_pred             HcCC
Confidence            5553

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.51  E-value=3e-14  Score=132.03  Aligned_cols=134  Identities=18%  Similarity=0.202  Sum_probs=90.9

Q ss_pred             eeEEEEECCCCCCC-CCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          266 GGIDISLAPSSFGQ-ANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       266 ~g~~~~i~~~~FfQ-~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      .|.++...++..+. ......+.+++.+.... ++.+|||+|||+|.+++.++.. ++.+|+|||+|+++++.|++|++.
T Consensus        21 ~g~~l~~~~~~~~rp~~~~~~~~l~~~l~~~~-~~~~vLDlGcGtG~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~   98 (201)
T 2ift_A           21 RGRKLPVLNSEGLRPTGDRVKETLFNWLMPYI-HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQT   98 (201)
T ss_dssp             TTCEEECC---------CHHHHHHHHHHHHHH-TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCcEecCCCCCCcCcCHHHHHHHHHHHHHHhc-CCCeEEEcCCccCHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHH
Confidence            34555554432221 12233344444443322 5789999999999999987764 467999999999999999999987


Q ss_pred             CCCCCC-CcEEEEEccCCcCcccc-cCC-ccEEEECCC-CCCccHHHHHHHHh---cCCCCcEEEEe
Q 044572          345 LPKSVD-GNISWHNADNSIEPLSW-LVG-SDVLVVDPP-RKGLDSSLVHALQS---IGSAERKAKSL  404 (457)
Q Consensus       345 ~~~~~~-~nv~~~~~d~~~~~~~~-~~~-~D~vi~DPP-R~Gl~~~v~~~l~~---~~~~~~ivyvs  404 (457)
                      +  +.. ++++++++|+.+..... .+. ||+|++||| ..+...++++.+.+   ++ ++++++++
T Consensus        99 ~--~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~Lk-pgG~l~i~  162 (201)
T 2ift_A           99 L--KCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLK-PNALIYVE  162 (201)
T ss_dssp             T--TCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEE-EEEEEEEE
T ss_pred             h--CCCccceEEEECCHHHHHHhhccCCCCCEEEECCCCCCccHHHHHHHHHhcCccC-CCcEEEEE
Confidence            4  221 58999999987754332 357 999999999 44445567777754   44 77777777

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.50  E-value=8.3e-14  Score=133.25  Aligned_cols=116  Identities=14%  Similarity=0.006  Sum_probs=91.2

Q ss_pred             eeEEEEECCCCCCCC--CHHHHHHHHHHHHhhCC----CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH
Q 044572          266 GGIDISLAPSSFGQA--NTRAFDILLRKLQKYVP----YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE  339 (457)
Q Consensus       266 ~g~~~~i~~~~FfQ~--n~~~~~~l~~~i~~~~~----~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~  339 (457)
                      .|.+|.++++.|+|.  |+..++.++..+.+.+.    ++.+|||+|||+|.+++.++......+|+|||+++.|++.|+
T Consensus        27 ~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~  106 (254)
T 2h00_A           27 FGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAK  106 (254)
T ss_dssp             HCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHH
T ss_pred             CCeeeecCccccCCCccchHHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence            466788889999997  66778888888877653    467999999999999999987533359999999999999999


Q ss_pred             HHHhhCCCCCCCcEEEEEccCCcC-ccccc----CCccEEEECCCCCCc
Q 044572          340 KTVSRLPKSVDGNISWHNADNSIE-PLSWL----VGSDVLVVDPPRKGL  383 (457)
Q Consensus       340 ~Na~~~~~~~~~nv~~~~~d~~~~-~~~~~----~~~D~vi~DPPR~Gl  383 (457)
                      +|++.+  +..++++++++|+.+. ...+.    ..||+|++|||+...
T Consensus       107 ~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~  153 (254)
T 2h00_A          107 KNVEQN--NLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFAN  153 (254)
T ss_dssp             HHHHHT--TCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC--
T ss_pred             HHHHHc--CCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccC
Confidence            999874  3334699999998762 21222    479999999998654

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.50  E-value=2.5e-13  Score=131.81  Aligned_cols=112  Identities=17%  Similarity=0.164  Sum_probs=93.0

Q ss_pred             eeeEEEEECCCCCCCCCHHHHHHHHHHHHhhC-CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHh
Q 044572          265 VGGIDISLAPSSFGQANTRAFDILLRKLQKYV-PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS  343 (457)
Q Consensus       265 ~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~-~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~  343 (457)
                      +.+..|.++++.|+.  +..++.+++.+.+.+ .++.+|||+|||+|.+++.++...+..+|+|+|+|+.+++.|++|++
T Consensus        77 f~~~~~~~~~~~~ip--r~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~  154 (276)
T 2b3t_A           77 FWSLPLFVSPATLIP--RPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ  154 (276)
T ss_dssp             ETTEEEECCTTSCCC--CTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH
T ss_pred             ECCceEEeCCCCccc--CchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence            567889999999986  455788888888876 46789999999999999999976555699999999999999999998


Q ss_pred             hCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCc
Q 044572          344 RLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGL  383 (457)
Q Consensus       344 ~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl  383 (457)
                      .+   +..+++++++|+.+...  .+.||+|+.|||+.+.
T Consensus       155 ~~---~~~~v~~~~~d~~~~~~--~~~fD~Iv~npPy~~~  189 (276)
T 2b3t_A          155 HL---AIKNIHILQSDWFSALA--GQQFAMIVSNPPYIDE  189 (276)
T ss_dssp             HH---TCCSEEEECCSTTGGGT--TCCEEEEEECCCCBCT
T ss_pred             Hc---CCCceEEEEcchhhhcc--cCCccEEEECCCCCCc
Confidence            74   23579999999977432  3579999999998654

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.49  E-value=1.1e-12  Score=121.30  Aligned_cols=117  Identities=23%  Similarity=0.248  Sum_probs=94.2

Q ss_pred             CCCCCCHHHHHHHHHHHHhh-CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEE
Q 044572          276 SFGQANTRAFDILLRKLQKY-VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNIS  354 (457)
Q Consensus       276 ~FfQ~n~~~~~~l~~~i~~~-~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~  354 (457)
                      +.|+.+...++.++..+... ..++.+|||+|||+|.+++.++.. +..+|+|||+++.+++.|++|++.+   .. +++
T Consensus        26 ~~~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~---~~-~~~  100 (207)
T 1wy7_A           26 EQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEF---KG-KFK  100 (207)
T ss_dssp             TCCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGG---TT-SEE
T ss_pred             eeecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHc---CC-CEE
Confidence            34778888888888776543 236789999999999999999975 5568999999999999999999873   22 799


Q ss_pred             EEEccCCcCcccccCCccEEEECCC----CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          355 WHNADNSIEPLSWLVGSDVLVVDPP----RKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       355 ~~~~d~~~~~~~~~~~~D~vi~DPP----R~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++++|+.+..    ..||+|++|||    +.+....+++.+.+..   +.+|++
T Consensus       101 ~~~~d~~~~~----~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l---~~~~~~  147 (207)
T 1wy7_A          101 VFIGDVSEFN----SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS---DVVYSI  147 (207)
T ss_dssp             EEESCGGGCC----CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC---SEEEEE
T ss_pred             EEECchHHcC----CCCCEEEEcCCCccccCCchHHHHHHHHHhc---CcEEEE
Confidence            9999997742    47999999999    4566667777776664   568887

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.48  E-value=6.1e-14  Score=125.02  Aligned_cols=132  Identities=18%  Similarity=0.115  Sum_probs=100.3

Q ss_pred             eeEEEEECCCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhC
Q 044572          266 GGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL  345 (457)
Q Consensus       266 ~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~  345 (457)
                      .+..|.++++ +........+.+++.+...+.++.+|||+|||+|.+++.++.. +. +|+|||+|+.+++.|++|++.+
T Consensus        10 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~-~~-~v~~vD~~~~~~~~a~~~~~~~   86 (171)
T 1ws6_A           10 RGVALKVPAS-ARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE-GW-EAVLVEKDPEAVRLLKENVRRT   86 (171)
T ss_dssp             TTCEECCCTT-CCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT-TC-EEEEECCCHHHHHHHHHHHHHH
T ss_pred             CCeEecCCCC-CCCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHC-CC-eEEEEeCCHHHHHHHHHHHHHc
Confidence            4667777777 6666666666777766554436889999999999999999985 33 5999999999999999999874


Q ss_pred             CCCCCCcEEEEEccCCcCccccc---CCccEEEECCCCCCccHHHHHHHH--hcCCCCcEEEEe
Q 044572          346 PKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQ--SIGSAERKAKSL  404 (457)
Q Consensus       346 ~~~~~~nv~~~~~d~~~~~~~~~---~~~D~vi~DPPR~Gl~~~v~~~l~--~~~~~~~ivyvs  404 (457)
                      +   . +++++++|+.+.+....   ..||+|++|||..+...++++.+.  ++-.++++++++
T Consensus        87 ~---~-~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~  146 (171)
T 1ws6_A           87 G---L-GARVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             T---C-CCEEECSCHHHHHHHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             C---C-ceEEEeccHHHHHHhhhccCCceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEE
Confidence            2   2 78999999877433221   379999999998644456777776  433477888887

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.48  E-value=5e-13  Score=136.02  Aligned_cols=145  Identities=23%  Similarity=0.188  Sum_probs=109.5

Q ss_pred             eeEEEEECCCCCCCCCH-HHHHHHHHHHHhhCC----CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572          266 GGIDISLAPSSFGQANT-RAFDILLRKLQKYVP----YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK  340 (457)
Q Consensus       266 ~g~~~~i~~~~FfQ~n~-~~~~~l~~~i~~~~~----~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~  340 (457)
                      .+++|...++.|++.+. ..++.+++.+.+.+.    ++.+|||+|||+|.+++.+++. + .+|+|||+|+.+++.|++
T Consensus       196 ~~~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~V~gvDis~~al~~A~~  273 (381)
T 3dmg_A          196 AEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM-G-AEVVGVEDDLASVLSLQK  273 (381)
T ss_dssp             EEEEEEECTTCTTTTSCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT-T-CEEEEEESBHHHHHHHHH
T ss_pred             ceEEEEeCCCceeCCCCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc-C-CEEEEEECCHHHHHHHHH
Confidence            46788899999998854 456667777766542    6789999999999999999986 3 499999999999999999


Q ss_pred             HHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCC-----cc--HHHHHHHHhcCCCCcEEEEeccCCCCCch
Q 044572          341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKG-----LD--SSLVHALQSIGSAERKAKSLSESSSSMVK  413 (457)
Q Consensus       341 Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~G-----l~--~~v~~~l~~~~~~~~ivyvs~~~~~c~~~  413 (457)
                      |++.++   . +++++++|+.+.... .+.||+|++|||...     ..  ..+++.+.+.-.+++.++++     |+..
T Consensus       274 n~~~~~---~-~v~~~~~D~~~~~~~-~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv-----~n~~  343 (381)
T 3dmg_A          274 GLEANA---L-KAQALHSDVDEALTE-EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV-----SNPF  343 (381)
T ss_dssp             HHHHTT---C-CCEEEECSTTTTSCT-TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE-----ECTT
T ss_pred             HHHHcC---C-CeEEEEcchhhcccc-CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE-----EcCC
Confidence            998842   2 389999999876532 358999999999753     11  23444444443478888887     7777


Q ss_pred             hchhhHHHH
Q 044572          414 EEKRPWILR  422 (457)
Q Consensus       414 ~~~~~~~~~  422 (457)
                      .....++..
T Consensus       344 l~~~~~l~~  352 (381)
T 3dmg_A          344 LKYEPLLEE  352 (381)
T ss_dssp             SCHHHHHHH
T ss_pred             CChHHHHHH
Confidence            666655544

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.45  E-value=1.1e-12  Score=120.85  Aligned_cols=130  Identities=15%  Similarity=0.130  Sum_probs=94.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhh-CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEE
Q 044572          276 SFGQANTRAFDILLRKLQKY-VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNIS  354 (457)
Q Consensus       276 ~FfQ~n~~~~~~l~~~i~~~-~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~  354 (457)
                      .+|+.+...++.++..+... ..++.+|||+|||+|.+++.++.. ++.+|+|||+++.+++.|++|++        +++
T Consensus        28 ~~~~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~--------~~~   98 (200)
T 1ne2_A           28 EQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG--------GVN   98 (200)
T ss_dssp             --CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT--------TSE
T ss_pred             eecCCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC--------CCE
Confidence            56777888888888776643 236789999999999999999975 56689999999999999999864        578


Q ss_pred             EEEccCCcCcccccCCccEEEECCC----CCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhc
Q 044572          355 WHNADNSIEPLSWLVGSDVLVVDPP----RKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEAS  427 (457)
Q Consensus       355 ~~~~d~~~~~~~~~~~~D~vi~DPP----R~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~  427 (457)
                      ++++|+.+..    +.||+|++|||    +.+....+++.+.+..   +.+|++     |++.+ ...+...+...+
T Consensus        99 ~~~~d~~~~~----~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~-----~~~~~-~~~~~~~~~~~g  162 (200)
T 1ne2_A           99 FMVADVSEIS----GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSI-----GNAKA-RDFLRREFSARG  162 (200)
T ss_dssp             EEECCGGGCC----CCEEEEEECCCC-------CHHHHHHHHHHE---EEEEEE-----EEGGG-HHHHHHHHHHHE
T ss_pred             EEECcHHHCC----CCeeEEEECCCchhccCchhHHHHHHHHHhc---CcEEEE-----EcCch-HHHHHHHHHHCC
Confidence            9999998742    57999999999    4455556777776664   568887     66543 233334444443

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.44  E-value=1.2e-13  Score=124.44  Aligned_cols=104  Identities=17%  Similarity=0.213  Sum_probs=82.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.+++.++.. +..+|+|||+++++++.|++|++.+  +..++++++++|+.+.+......||+|++|
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~  107 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMT--KAENRFTLLKMEAERAIDCLTGRFDLVFLD  107 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTT--TCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHc--CCCCceEEEECcHHHhHHhhcCCCCEEEEC
Confidence            6789999999999999999975 5679999999999999999999873  233579999999877543334579999999


Q ss_pred             CCCC-CccHHHHHHHH--hcCCCCcEEEEe
Q 044572          378 PPRK-GLDSSLVHALQ--SIGSAERKAKSL  404 (457)
Q Consensus       378 PPR~-Gl~~~v~~~l~--~~~~~~~ivyvs  404 (457)
                      ||+. +...++++.+.  ++-.++++++++
T Consensus       108 ~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~  137 (177)
T 2esr_A          108 PPYAKETIVATIEALAAKNLLSEQVMVVCE  137 (177)
T ss_dssp             CSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             CCCCcchHHHHHHHHHhCCCcCCCcEEEEE
Confidence            9973 33445666665  332477888887

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.44  E-value=8.3e-13  Score=124.05  Aligned_cols=107  Identities=18%  Similarity=0.204  Sum_probs=80.7

Q ss_pred             eeEEEEECCCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          266 GGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       266 ~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      .+..|.+++..|+.  +..++.++  +...+.++.+|||+||| +|.+++.++... ..+|+|+|+++.+++.|++|++.
T Consensus        27 ~~~~~~~~~~~~~p--~~~~~~l~--~~~~~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~  101 (230)
T 3evz_A           27 FGLDIEYHPKGLVT--TPISRYIF--LKTFLRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIER  101 (230)
T ss_dssp             HCCCCCCCTTSCCC--CHHHHHHH--HHTTCCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHH
T ss_pred             cCCceecCCCeEeC--CCchhhhH--hHhhcCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHH
Confidence            34556677777774  34445442  33445678999999999 999999999863 35999999999999999999988


Q ss_pred             CCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCC
Q 044572          345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK  381 (457)
Q Consensus       345 ~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~  381 (457)
                      ++   . +++++++|+........+.||+|++|||+.
T Consensus       102 ~~---~-~v~~~~~d~~~~~~~~~~~fD~I~~npp~~  134 (230)
T 3evz_A          102 NN---S-NVRLVKSNGGIIKGVVEGTFDVIFSAPPYY  134 (230)
T ss_dssp             TT---C-CCEEEECSSCSSTTTCCSCEEEEEECCCCC
T ss_pred             hC---C-CcEEEeCCchhhhhcccCceeEEEECCCCc
Confidence            42   2 789999997533211126799999999964

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.43  E-value=6.6e-13  Score=134.92  Aligned_cols=146  Identities=13%  Similarity=0.080  Sum_probs=105.2

Q ss_pred             eeEEEEECCCCCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHh
Q 044572          266 GGIDISLAPSSFGQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS  343 (457)
Q Consensus       266 ~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~  343 (457)
                      .++++...++.|.+.+......++   .+.+.  .+.+|||+|||+|.+++.+++.....+|+|||+|+.+++.|++|++
T Consensus       191 ~~~~~~~~pg~Fs~~~~d~~~~~l---l~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~  267 (375)
T 4dcm_A          191 TDWTIHNHANVFSRTGLDIGARFF---MQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE  267 (375)
T ss_dssp             TTEEEEECTTCTTCSSCCHHHHHH---HHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CceEEEeCCCcccCCcccHHHHHH---HHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHH
Confidence            367888899999997765544333   33333  4689999999999999999987545699999999999999999998


Q ss_pred             hCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCC-------CccHHHHHHHHhcCCCCcEEEEeccCCCCCchhch
Q 044572          344 RLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK-------GLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEK  416 (457)
Q Consensus       344 ~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~-------Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~  416 (457)
                      .++.....+++|+.+|+.+.+.  .+.||+|++|||..       ....++++.+.+.-.+++.++++     |+.+...
T Consensus       268 ~ngl~~~~~v~~~~~D~~~~~~--~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv-----~n~~~~~  340 (375)
T 4dcm_A          268 TNMPEALDRCEFMINNALSGVE--PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV-----ANRHLDY  340 (375)
T ss_dssp             HHCGGGGGGEEEEECSTTTTCC--TTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE-----EETTSCH
T ss_pred             HcCCCcCceEEEEechhhccCC--CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE-----EECCcCH
Confidence            7431111368999999987432  25799999999953       11124556655533478888887     6665555


Q ss_pred             hhHHH
Q 044572          417 RPWIL  421 (457)
Q Consensus       417 ~~~~~  421 (457)
                      ..++.
T Consensus       341 ~~~l~  345 (375)
T 4dcm_A          341 FHKLK  345 (375)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.43  E-value=1.3e-12  Score=123.37  Aligned_cols=103  Identities=14%  Similarity=0.004  Sum_probs=81.7

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--cccCCccEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSDVL  374 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~~~~~D~v  374 (457)
                      .++.+|||+|||+|.+++.+|...+..+|+|||+++.+++.|++|++.   +  .|+.++.+|+.+...  .....||+|
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~---~--~~v~~~~~d~~~~~~~~~~~~~~D~v  147 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE---R--ENIIPILGDANKPQEYANIVEKVDVI  147 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT---C--TTEEEEECCTTCGGGGTTTSCCEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc---C--CCeEEEECCCCCcccccccCccEEEE
Confidence            367899999999999999999875456999999999999999999875   2  689999999976211  112579999


Q ss_pred             EECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          375 VVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       375 i~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.|++..+....+++.+.+.-.+++.++++
T Consensus       148 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          148 YEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            999988776667677666443477777774

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.43  E-value=5.5e-13  Score=128.16  Aligned_cols=149  Identities=15%  Similarity=0.058  Sum_probs=103.7

Q ss_pred             eeeEEEEECCCCCCCCCHHHHHHHH-HHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHh
Q 044572          265 VGGIDISLAPSSFGQANTRAFDILL-RKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS  343 (457)
Q Consensus       265 ~~g~~~~i~~~~FfQ~n~~~~~~l~-~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~  343 (457)
                      .+++.+.++|+.||+.+...+..++ +.+...+.++.+|||+|||+|.+++.+++. ++ +|+|+|+++.+++.|++|++
T Consensus        86 ~~~~~~~l~p~~~fgtg~~~tt~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~-g~-~v~gvDi~~~~v~~a~~n~~  163 (254)
T 2nxc_A           86 GAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL-GG-KALGVDIDPMVLPQAEANAK  163 (254)
T ss_dssp             SSSEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-TC-EEEEEESCGGGHHHHHHHHH
T ss_pred             CCceEEEECCCccccCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHh-CC-eEEEEECCHHHHHHHHHHHH
Confidence            4567899999999999866555444 444445567899999999999999999985 44 99999999999999999998


Q ss_pred             hCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHH
Q 044572          344 RLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRA  423 (457)
Q Consensus       344 ~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~  423 (457)
                      .+   ... ++++++|+.+.+.  ...||+|+.|++...+. .+++.+.++-.+++.++++     .........+...+
T Consensus       164 ~~---~~~-v~~~~~d~~~~~~--~~~fD~Vv~n~~~~~~~-~~l~~~~~~LkpgG~lils-----~~~~~~~~~v~~~l  231 (254)
T 2nxc_A          164 RN---GVR-PRFLEGSLEAALP--FGPFDLLVANLYAELHA-ALAPRYREALVPGGRALLT-----GILKDRAPLVREAM  231 (254)
T ss_dssp             HT---TCC-CEEEESCHHHHGG--GCCEEEEEEECCHHHHH-HHHHHHHHHEEEEEEEEEE-----EEEGGGHHHHHHHH
T ss_pred             Hc---CCc-EEEEECChhhcCc--CCCCCEEEECCcHHHHH-HHHHHHHHHcCCCCEEEEE-----eeccCCHHHHHHHH
Confidence            84   233 8999999876321  35799999998754433 3445454433477777776     44444556666665


Q ss_pred             HHhc
Q 044572          424 KEAS  427 (457)
Q Consensus       424 ~~~~  427 (457)
                      .+.+
T Consensus       232 ~~~G  235 (254)
T 2nxc_A          232 AGAG  235 (254)
T ss_dssp             HHTT
T ss_pred             HHCC
Confidence            5543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.43  E-value=3.7e-12  Score=115.35  Aligned_cols=151  Identities=16%  Similarity=0.168  Sum_probs=104.2

Q ss_pred             EEeeeeEEEEE-CCCCCCCCCH--HHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHH
Q 044572          262 WENVGGIDISL-APSSFGQANT--RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF  338 (457)
Q Consensus       262 ~~~~~g~~~~i-~~~~FfQ~n~--~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A  338 (457)
                      .+.+.+..+.+ ...+||+.+.  ..++.+++.+.  ..++.+|||+|||+|.+++.++..  ..+|+|+|+++.+++.|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a   90 (194)
T 1dus_A           15 EDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLA   90 (194)
T ss_dssp             EEEETTEEEEEEEETTSTTTTSCCHHHHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHH
T ss_pred             eeecCCCceEEEeCCCcCCccccchHHHHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHH
Confidence            34455666666 3467777664  45555555432  136789999999999999999986  46999999999999999


Q ss_pred             HHHHhhCCCCCCCc--EEEEEccCCcCcccccCCccEEEECCCCCC-c--cHHHHHHHHhcCCCCcEEEEeccCCCCCch
Q 044572          339 EKTVSRLPKSVDGN--ISWHNADNSIEPLSWLVGSDVLVVDPPRKG-L--DSSLVHALQSIGSAERKAKSLSESSSSMVK  413 (457)
Q Consensus       339 ~~Na~~~~~~~~~n--v~~~~~d~~~~~~~~~~~~D~vi~DPPR~G-l--~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~  413 (457)
                      ++|++.+   ...+  ++++++|+.+...  .+.||+|++|||... .  ...+++.+.++-.+++.+++.     +...
T Consensus        91 ~~~~~~~---~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~-----~~~~  160 (194)
T 1dus_A           91 KENIKLN---NLDNYDIRVVHSDLYENVK--DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV-----IQTK  160 (194)
T ss_dssp             HHHHHHT---TCTTSCEEEEECSTTTTCT--TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE-----EEST
T ss_pred             HHHHHHc---CCCccceEEEECchhcccc--cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEE-----ECCC
Confidence            9999873   2345  9999999987543  357999999999653 1  124455554443467777776     4444


Q ss_pred             hchhhHHHHHHHh
Q 044572          414 EEKRPWILRAKEA  426 (457)
Q Consensus       414 ~~~~~~~~~~~~~  426 (457)
                      ...+.+...+.+.
T Consensus       161 ~~~~~~~~~l~~~  173 (194)
T 1dus_A          161 QGAKSLAKYMKDV  173 (194)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHH
Confidence            4444455554444

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.42  E-value=2.3e-12  Score=119.71  Aligned_cols=118  Identities=9%  Similarity=0.059  Sum_probs=86.2

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.+++.+|+.  ..+|+|||+++++++.|++|++.+  +..++++++++|+.+.+.. ...||+|++
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~--g~~~~v~~~~~d~~~~~~~-~~~~D~v~~  128 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTY--GLSPRMRAVQGTAPAALAD-LPLPEAVFI  128 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEESCTTGGGTT-SCCCSEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc--CCCCCEEEEeCchhhhccc-CCCCCEEEE
Confidence            46889999999999999999986  459999999999999999999884  2334899999999875433 257999999


Q ss_pred             CCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhc
Q 044572          377 DPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEAS  427 (457)
Q Consensus       377 DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~  427 (457)
                      ++.   +..++++.+.+.-.+++.++++     +........+...+++..
T Consensus       129 ~~~---~~~~~l~~~~~~LkpgG~lv~~-----~~~~~~~~~~~~~l~~~g  171 (204)
T 3njr_A          129 GGG---GSQALYDRLWEWLAPGTRIVAN-----AVTLESETLLTQLHARHG  171 (204)
T ss_dssp             CSC---CCHHHHHHHHHHSCTTCEEEEE-----ECSHHHHHHHHHHHHHHC
T ss_pred             CCc---ccHHHHHHHHHhcCCCcEEEEE-----ecCcccHHHHHHHHHhCC
Confidence            983   3343666666543455555555     333344455555555544

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.41  E-value=1.5e-12  Score=120.20  Aligned_cols=149  Identities=17%  Similarity=0.131  Sum_probs=105.6

Q ss_pred             eeEEEEECCCC-CCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          266 GGIDISLAPSS-FGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       266 ~g~~~~i~~~~-FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      .+..+.+++.. |-+........+++.+.+.+.++.+|||+|||+|.+++.+++. +..+|+|+|+++.+++.|++|++.
T Consensus        27 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~  105 (205)
T 3grz_A           27 DQEIIRLDPGLAFGTGNHQTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAAL  105 (205)
T ss_dssp             TCEEEEESCC-----CCHHHHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CceeEEecCCcccCCCCCccHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence            35677788876 4444555666777777776777899999999999999999974 567999999999999999999987


Q ss_pred             CCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHH
Q 044572          345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAK  424 (457)
Q Consensus       345 ~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~  424 (457)
                      +   ...+++++++|+.+..   .+.||+|+++++...+ ..+++.+.++-.+++.++++     +........+...+.
T Consensus       106 ~---~~~~v~~~~~d~~~~~---~~~fD~i~~~~~~~~~-~~~l~~~~~~L~~gG~l~~~-----~~~~~~~~~~~~~~~  173 (205)
T 3grz_A          106 N---GIYDIALQKTSLLADV---DGKFDLIVANILAEIL-LDLIPQLDSHLNEDGQVIFS-----GIDYLQLPKIEQALA  173 (205)
T ss_dssp             T---TCCCCEEEESSTTTTC---CSCEEEEEEESCHHHH-HHHGGGSGGGEEEEEEEEEE-----EEEGGGHHHHHHHHH
T ss_pred             c---CCCceEEEeccccccC---CCCceEEEECCcHHHH-HHHHHHHHHhcCCCCEEEEE-----ecCcccHHHHHHHHH
Confidence            4   2345999999997753   3689999999986332 12333333333466777765     444445566666666


Q ss_pred             Hhc
Q 044572          425 EAS  427 (457)
Q Consensus       425 ~~~  427 (457)
                      +.+
T Consensus       174 ~~G  176 (205)
T 3grz_A          174 ENS  176 (205)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            554

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.40  E-value=5.2e-12  Score=116.51  Aligned_cols=121  Identities=11%  Similarity=0.044  Sum_probs=91.3

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.+++.+|+..+..+|+|||+++++++.|++|++.+   +.++++++++|+.+.+.. ...||+|++
T Consensus        39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~-~~~~D~i~~  114 (204)
T 3e05_A           39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKF---VARNVTLVEAFAPEGLDD-LPDPDRVFI  114 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHH---TCTTEEEEECCTTTTCTT-SCCCSEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh---CCCcEEEEeCChhhhhhc-CCCCCEEEE
Confidence            4688999999999999999998764579999999999999999999874   237899999999765543 257999999


Q ss_pred             CCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhc
Q 044572          377 DPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEAS  427 (457)
Q Consensus       377 DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~  427 (457)
                      +.+..... .+++.+.+.-.+++.++++     +........+...+.+.+
T Consensus       115 ~~~~~~~~-~~l~~~~~~LkpgG~l~~~-----~~~~~~~~~~~~~l~~~g  159 (204)
T 3e05_A          115 GGSGGMLE-EIIDAVDRRLKSEGVIVLN-----AVTLDTLTKAVEFLEDHG  159 (204)
T ss_dssp             SCCTTCHH-HHHHHHHHHCCTTCEEEEE-----ECBHHHHHHHHHHHHHTT
T ss_pred             CCCCcCHH-HHHHHHHHhcCCCeEEEEE-----ecccccHHHHHHHHHHCC
Confidence            99865443 4555555544466666665     444445556666665554

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.40  E-value=3.2e-13  Score=122.28  Aligned_cols=135  Identities=15%  Similarity=0.216  Sum_probs=93.1

Q ss_pred             eeEEEEECCCCCCCC-CHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          266 GGIDISLAPSSFGQA-NTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       266 ~g~~~~i~~~~FfQ~-n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      .|.+|.++++..... .....+.+++.+... .++.+|||+|||+|.+++.++. .++.+|+|||+++.+++.|++|++.
T Consensus        12 ~~~~~~~~~~~~~rp~~~~~~~~~~~~l~~~-~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~   89 (187)
T 2fhp_A           12 GGRRLKALDGDNTRPTTDKVKESIFNMIGPY-FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAI   89 (187)
T ss_dssp             TTCBCCCCCCCSSCCCCHHHHHHHHHHHCSC-CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             cCccccCCCCCCcCcCHHHHHHHHHHHHHhh-cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHH
Confidence            355555555443322 233444444433222 2578999999999999999887 4567999999999999999999987


Q ss_pred             CCCCCCCcEEEEEccCCcCcccc---cCCccEEEECCCCC-CccHHHHHHHHh--cCCCCcEEEEe
Q 044572          345 LPKSVDGNISWHNADNSIEPLSW---LVGSDVLVVDPPRK-GLDSSLVHALQS--IGSAERKAKSL  404 (457)
Q Consensus       345 ~~~~~~~nv~~~~~d~~~~~~~~---~~~~D~vi~DPPR~-Gl~~~v~~~l~~--~~~~~~ivyvs  404 (457)
                      +  +..++++++++|+.+.....   ...||+|++|||+. +....+++.+..  +-.++++++++
T Consensus        90 ~--~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~  153 (187)
T 2fhp_A           90 T--KEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE  153 (187)
T ss_dssp             H--TCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             h--CCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEE
Confidence            4  23357999999987744321   35799999999953 444566666632  22367777776

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.38  E-value=2.2e-13  Score=125.74  Aligned_cols=106  Identities=21%  Similarity=0.334  Sum_probs=68.3

Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHHhhC---CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCC
Q 044572          270 ISLAPSSFGQANTRAFDILLRKLQKYV---PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP  346 (457)
Q Consensus       270 ~~i~~~~FfQ~n~~~~~~l~~~i~~~~---~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~  346 (457)
                      |.++++.|..  +..++.+++.+.+.+   .++.+|||+|||+|.+++.++......+|+|+|+++.+++.|++|++.+ 
T Consensus         1 f~~~~~~~~p--~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-   77 (215)
T 4dzr_A            1 FEVGPDCLIP--RPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERF-   77 (215)
T ss_dssp             CBCSGGGGSC--CHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------
T ss_pred             CcCCCCccCC--CccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHh-
Confidence            3456667764  466788888888765   4678999999999999999998754459999999999999999998863 


Q ss_pred             CCCCCcEEEEEccCCcCccc---ccCCccEEEECCCCC
Q 044572          347 KSVDGNISWHNADNSIEPLS---WLVGSDVLVVDPPRK  381 (457)
Q Consensus       347 ~~~~~nv~~~~~d~~~~~~~---~~~~~D~vi~DPPR~  381 (457)
                        .. +++++++|+.+.+..   ..+.||+|++|||+.
T Consensus        78 --~~-~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~  112 (215)
T 4dzr_A           78 --GA-VVDWAAADGIEWLIERAERGRPWHAIVSNPPYI  112 (215)
T ss_dssp             --------CCHHHHHHHHHHHHHTTCCBSEEEECCCCC
T ss_pred             --CC-ceEEEEcchHhhhhhhhhccCcccEEEECCCCC
Confidence              22 789999998773322   126899999999974

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.38  E-value=4.3e-12  Score=121.95  Aligned_cols=121  Identities=17%  Similarity=0.138  Sum_probs=87.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~  376 (457)
                      ++.+|||+|||+|.+++.+|... ..+|+|||+++.+++.|++|++.+  +..++++++++|+.+....+ .+.||+|++
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~-~~~v~gvDi~~~~~~~a~~n~~~~--~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~  125 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRT-KAKIVGVEIQERLADMAKRSVAYN--QLEDQIEIIEYDLKKITDLIPKERADIVTC  125 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTC-CCEEEEECCSHHHHHHHHHHHHHT--TCTTTEEEECSCGGGGGGTSCTTCEEEEEE
T ss_pred             CCCEEEEcCCchhHHHHHHHHhc-CCcEEEEECCHHHHHHHHHHHHHC--CCcccEEEEECcHHHhhhhhccCCccEEEE
Confidence            68899999999999999999864 349999999999999999999984  33457999999998765433 367999999


Q ss_pred             CCCCCCc-----c-----------------HHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhc
Q 044572          377 DPPRKGL-----D-----------------SSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEAS  427 (457)
Q Consensus       377 DPPR~Gl-----~-----------------~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~  427 (457)
                      |||+...     .                 ..+++.+..+-.+++.+++.     + +.....+++..+....
T Consensus       126 npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~-----~-~~~~~~~~~~~l~~~~  192 (259)
T 3lpm_A          126 NPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV-----H-RPERLLDIIDIMRKYR  192 (259)
T ss_dssp             CCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE-----E-CTTTHHHHHHHHHHTT
T ss_pred             CCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE-----E-cHHHHHHHHHHHHHCC
Confidence            9997432     1                 13455554433456666664     3 2334555666665543

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.36  E-value=9.7e-12  Score=115.76  Aligned_cols=123  Identities=11%  Similarity=-0.058  Sum_probs=92.6

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi  375 (457)
                      .++.+|||+|||+|.+++.+|......+|+|||+++.+++.|++|++.+   +..|++++++|+.+..... .+.||+|+
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~D~i~  116 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV---GVPNIKLLWVDGSDLTDYFEDGEIDRLY  116 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH---CCSSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHc---CCCCEEEEeCCHHHHHhhcCCCCCCEEE
Confidence            3578999999999999999998754569999999999999999999873   2368999999998743212 25699999


Q ss_pred             ECCCCC----------CccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhc
Q 044572          376 VDPPRK----------GLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEAS  427 (457)
Q Consensus       376 ~DPPR~----------Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~  427 (457)
                      +++|-.          .....+++.+...-.+++.++++     +......+...+.+...+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~-----~~~~~~~~~~~~~~~~~g  173 (214)
T 1yzh_A          117 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK-----TDNRGLFEYSLVSFSQYG  173 (214)
T ss_dssp             EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE-----ESCHHHHHHHHHHHHHHT
T ss_pred             EECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE-----eCCHHHHHHHHHHHHHCC
Confidence            998832          12356777777755588888887     655555555555555543

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.35  E-value=4.7e-13  Score=136.72  Aligned_cols=105  Identities=18%  Similarity=0.232  Sum_probs=81.2

Q ss_pred             ECCC-CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCC
Q 044572          272 LAPS-SFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVD  350 (457)
Q Consensus       272 i~~~-~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~  350 (457)
                      +++. ++.|..++.......   ..+.+|.+|||+|||+|.+++.+|+.  +.+|+|||+|+.+++.|++|++.+.+ +.
T Consensus        69 ~p~~~~~eQat~e~vA~~~a---~~l~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~-gl  142 (410)
T 3ll7_A           69 IPSRLSLEQSSGAVTSSYKS---RFIREGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLN-EG  142 (410)
T ss_dssp             CCCHHHHHHSCCHHHHHHGG---GGSCTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSC-TT
T ss_pred             cCCCCChhhcCHHHHHHHHH---HhcCCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhcc-CC
Confidence            4555 788887766544322   33445899999999999999999975  45999999999999999999987411 23


Q ss_pred             CcEEEEEccCCcCcccc-cCCccEEEECCCCCC
Q 044572          351 GNISWHNADNSIEPLSW-LVGSDVLVVDPPRKG  382 (457)
Q Consensus       351 ~nv~~~~~d~~~~~~~~-~~~~D~vi~DPPR~G  382 (457)
                      ++++++++|+.+.+... ...||+|++||||.+
T Consensus       143 ~~i~~i~~Da~~~L~~~~~~~fDvV~lDPPrr~  175 (410)
T 3ll7_A          143 KDVNILTGDFKEYLPLIKTFHPDYIYVDPARRS  175 (410)
T ss_dssp             CEEEEEESCGGGSHHHHHHHCCSEEEECCEEC-
T ss_pred             CcEEEEECcHHHhhhhccCCCceEEEECCCCcC
Confidence            68999999998865432 247999999999865

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.35  E-value=7.6e-12  Score=113.40  Aligned_cols=85  Identities=13%  Similarity=-0.019  Sum_probs=67.5

Q ss_pred             HHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCC
Q 044572          291 KLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG  370 (457)
Q Consensus       291 ~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~  370 (457)
                      .+...+.++.+|||+|||+|.+++.+|+.  ..+|+|||+|+++++.|++|++.+   +.++++++++|+........+.
T Consensus        15 ~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~---~~~~v~~~~~~~~~l~~~~~~~   89 (185)
T 3mti_A           15 FLAEVLDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDL---GIENTELILDGHENLDHYVREP   89 (185)
T ss_dssp             HHHTTCCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHH---TCCCEEEEESCGGGGGGTCCSC
T ss_pred             HHHHhCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHc---CCCcEEEEeCcHHHHHhhccCC
Confidence            33445567899999999999999999976  469999999999999999999874   2378999997776532222357


Q ss_pred             ccEEEECCCC
Q 044572          371 SDVLVVDPPR  380 (457)
Q Consensus       371 ~D~vi~DPPR  380 (457)
                      ||+|++|++.
T Consensus        90 fD~v~~~~~~   99 (185)
T 3mti_A           90 IRAAIFNLGY   99 (185)
T ss_dssp             EEEEEEEEC-
T ss_pred             cCEEEEeCCC
Confidence            9999999653

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.33  E-value=3.9e-12  Score=122.58  Aligned_cols=120  Identities=17%  Similarity=0.166  Sum_probs=85.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh---CCCCCCCcEEEEEccCCcCccc-----c-c
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR---LPKSVDGNISWHNADNSIEPLS-----W-L  368 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~---~~~~~~~nv~~~~~d~~~~~~~-----~-~  368 (457)
                      ++.+|||+|||+|.+++.+|.+....+|+|||+++.+++.|++|++.   +  +..++++++++|+.+....     + .
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~--~l~~~v~~~~~D~~~~~~~~~~~~~~~  113 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNA--AFSARIEVLEADVTLRAKARVEAGLPD  113 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGT--TTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhC--CCcceEEEEeCCHHHHhhhhhhhccCC
Confidence            57899999999999999999875456999999999999999999876   4  2334799999999876321     1 3


Q ss_pred             CCccEEEECCCCCCc--------------------cHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHH
Q 044572          369 VGSDVLVVDPPRKGL--------------------DSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKE  425 (457)
Q Consensus       369 ~~~D~vi~DPPR~Gl--------------------~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~  425 (457)
                      ..||+|++|||+...                    ...+++.+..+-.+++.+++.     .. .....+++..+++
T Consensus       114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~-----~~-~~~~~~~~~~l~~  184 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI-----SR-PQSVAEIIAACGS  184 (260)
T ss_dssp             TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE-----EC-GGGHHHHHHHHTT
T ss_pred             CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE-----Ec-HHHHHHHHHHHHh
Confidence            579999999997532                    123455544433466666664     33 3345556666554

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.33  E-value=7.1e-12  Score=127.19  Aligned_cols=125  Identities=17%  Similarity=0.150  Sum_probs=92.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572          281 NTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN  360 (457)
Q Consensus       281 n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~  360 (457)
                      +...+..|+..+   ..++.+|||+|||+|++++.+|......+|+|+|+|+.+++.|++|++.+  +..++++++++|+
T Consensus       203 ~~~la~~l~~~~---~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~--gl~~~i~~~~~D~  277 (373)
T 3tm4_A          203 KASIANAMIELA---ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAA--GVLDKIKFIQGDA  277 (373)
T ss_dssp             CHHHHHHHHHHH---TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHT--TCGGGCEEEECCG
T ss_pred             cHHHHHHHHHhh---cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc--CCCCceEEEECCh
Confidence            345555555554   35688999999999999999998643348999999999999999999884  3336899999999


Q ss_pred             CcCcccccCCccEEEECCCCC---Cc-------cHHHHHHHHhcCCCCcEEEEeccCCCCCchhchh
Q 044572          361 SIEPLSWLVGSDVLVVDPPRK---GL-------DSSLVHALQSIGSAERKAKSLSESSSSMVKEEKR  417 (457)
Q Consensus       361 ~~~~~~~~~~~D~vi~DPPR~---Gl-------~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~  417 (457)
                      .+.... .+.||+||+|||+.   |-       -..+.+.+.+.. .++++|++     |++....+
T Consensus       278 ~~~~~~-~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~-----~~~~~~~~  337 (373)
T 3tm4_A          278 TQLSQY-VDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFIT-----TEKKAIEE  337 (373)
T ss_dssp             GGGGGT-CSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEE-----SCHHHHHH
T ss_pred             hhCCcc-cCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEE-----CCHHHHHH
Confidence            875422 35799999999953   21       134556666644 68889998     76554443

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.33  E-value=1.2e-11  Score=116.63  Aligned_cols=102  Identities=17%  Similarity=0.016  Sum_probs=78.7

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccccCCccE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDV  373 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D~  373 (457)
                      .++.+|||+|||+|.+++.+++.. +..+|+|||+++.|++.+.++++.+     .|++++++|+.+..  ......||+
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~~~~D~  150 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-----TNIIPVIEDARHPHKYRMLIAMVDV  150 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-----TTEEEECSCTTCGGGGGGGCCCEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-----CCeEEEEcccCChhhhcccCCcEEE
Confidence            368899999999999999999864 2359999999999999999999872     57999999998732  222357999


Q ss_pred             EEECCCCCCccHHHHH-HHHhcCCCCcEEEEe
Q 044572          374 LVVDPPRKGLDSSLVH-ALQSIGSAERKAKSL  404 (457)
Q Consensus       374 vi~DPPR~Gl~~~v~~-~l~~~~~~~~ivyvs  404 (457)
                      |++|+|.......++. ....++ +++.++++
T Consensus       151 V~~~~~~~~~~~~~~~~~~~~Lk-pgG~l~i~  181 (233)
T 2ipx_A          151 IFADVAQPDQTRIVALNAHTFLR-NGGHFVIS  181 (233)
T ss_dssp             EEECCCCTTHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             EEEcCCCccHHHHHHHHHHHHcC-CCeEEEEE
Confidence            9999994332233454 444454 78888887

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.32  E-value=1.5e-11  Score=116.21  Aligned_cols=96  Identities=20%  Similarity=0.218  Sum_probs=77.9

Q ss_pred             HHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccC
Q 044572          290 RKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLV  369 (457)
Q Consensus       290 ~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~  369 (457)
                      +.+.+++.++.+|||+|||+|.+++.+|+...+.+|+|+|+++.+++.|++|++.+  +..++++++.+|+.+.+.. ..
T Consensus        13 ~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~--gl~~~I~~~~gD~l~~~~~-~~   89 (230)
T 3lec_A           13 QKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEH--GLTSKIDVRLANGLSAFEE-AD   89 (230)
T ss_dssp             HHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHT--TCTTTEEEEECSGGGGCCG-GG
T ss_pred             HHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEECchhhcccc-cc
Confidence            45667788899999999999999999998655678999999999999999999985  3456799999999876532 13


Q ss_pred             CccEEEECCCCCCccHHHHHHHH
Q 044572          370 GSDVLVVDPPRKGLDSSLVHALQ  392 (457)
Q Consensus       370 ~~D~vi~DPPR~Gl~~~v~~~l~  392 (457)
                      .||+|++    +|+..+++..+.
T Consensus        90 ~~D~Ivi----aGmGg~lI~~IL  108 (230)
T 3lec_A           90 NIDTITI----CGMGGRLIADIL  108 (230)
T ss_dssp             CCCEEEE----EEECHHHHHHHH
T ss_pred             ccCEEEE----eCCchHHHHHHH
Confidence            6999887    677776555544

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.32  E-value=1.6e-11  Score=121.45  Aligned_cols=84  Identities=19%  Similarity=0.151  Sum_probs=69.5

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc--cCCccE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW--LVGSDV  373 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~--~~~~D~  373 (457)
                      .+|++|||+|||+|..++.+|... +..+|+|+|+++.+++.+++|++.+   +..|++++++|+.+.....  ...||.
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~---g~~~v~~~~~D~~~~~~~~~~~~~fD~  177 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA---GVSCCELAEEDFLAVSPSDPRYHEVHY  177 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCGGGSCTTCGGGTTEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCeEEEEeCChHhcCccccccCCCCE
Confidence            478999999999999999999753 3469999999999999999999984   3468999999987754321  147999


Q ss_pred             EEECCCCCCc
Q 044572          374 LVVDPPRKGL  383 (457)
Q Consensus       374 vi~DPPR~Gl  383 (457)
                      |++|||.+|.
T Consensus       178 Vl~D~PcSg~  187 (309)
T 2b9e_A          178 ILLDPSCSGS  187 (309)
T ss_dssp             EEECCCCCC-
T ss_pred             EEEcCCcCCC
Confidence            9999998654

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.32  E-value=1.6e-12  Score=123.00  Aligned_cols=106  Identities=15%  Similarity=0.224  Sum_probs=84.8

Q ss_pred             ECCCCCCCCCHHH-HHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCC
Q 044572          272 LAPSSFGQANTRA-FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVD  350 (457)
Q Consensus       272 i~~~~FfQ~n~~~-~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~  350 (457)
                      +++.+|||.+... .+.+...+.... ++.+|||+|||+|.+++.+|...  .+|+|||+|+.+++.|++|++.+  +..
T Consensus        52 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~--~~~  126 (241)
T 3gdh_A           52 LDREGWFSVTPEKIAEHIAGRVSQSF-KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVY--GIA  126 (241)
T ss_dssp             CCHHHHHHCCCHHHHHHHHHHHHHHS-CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHT--TCG
T ss_pred             ecccceeecCHHHHHHHHHHHhhhcc-CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHc--CCC
Confidence            3567888888764 555555555543 68999999999999999999863  69999999999999999999874  222


Q ss_pred             CcEEEEEccCCcCcccccCCccEEEECCCCCCcc
Q 044572          351 GNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLD  384 (457)
Q Consensus       351 ~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~  384 (457)
                      .+++++++|+.+...  ...||+|++|||..+..
T Consensus       127 ~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~~~~  158 (241)
T 3gdh_A          127 DKIEFICGDFLLLAS--FLKADVVFLSPPWGGPD  158 (241)
T ss_dssp             GGEEEEESCHHHHGG--GCCCSEEEECCCCSSGG
T ss_pred             cCeEEEECChHHhcc--cCCCCEEEECCCcCCcc
Confidence            589999999987542  36899999999987644

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.32  E-value=1.7e-11  Score=115.49  Aligned_cols=96  Identities=16%  Similarity=0.164  Sum_probs=75.9

Q ss_pred             HHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccC
Q 044572          290 RKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLV  369 (457)
Q Consensus       290 ~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~  369 (457)
                      +.+.+++.++.+|||+|||+|.+++.+|....+.+|+|+|+++.+++.|++|++.+  +..++++++.+|+.+.+.. ..
T Consensus         7 ~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~--gl~~~i~~~~~d~l~~l~~-~~   83 (225)
T 3kr9_A            7 ELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAH--GLKEKIQVRLANGLAAFEE-TD   83 (225)
T ss_dssp             HHHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--TCTTTEEEEECSGGGGCCG-GG
T ss_pred             HHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--CCCceEEEEECchhhhccc-Cc
Confidence            55667787889999999999999999998655678999999999999999999984  3445799999998765432 12


Q ss_pred             CccEEEECCCCCCccHHHHHHHH
Q 044572          370 GSDVLVVDPPRKGLDSSLVHALQ  392 (457)
Q Consensus       370 ~~D~vi~DPPR~Gl~~~v~~~l~  392 (457)
                      .||+|++    +|+..+++..+.
T Consensus        84 ~~D~Ivi----aG~Gg~~i~~Il  102 (225)
T 3kr9_A           84 QVSVITI----AGMGGRLIARIL  102 (225)
T ss_dssp             CCCEEEE----EEECHHHHHHHH
T ss_pred             CCCEEEE----cCCChHHHHHHH
Confidence            6998887    466665544443

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.32  E-value=1.5e-11  Score=117.18  Aligned_cols=122  Identities=13%  Similarity=0.159  Sum_probs=88.2

Q ss_pred             HHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccC
Q 044572          290 RKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLV  369 (457)
Q Consensus       290 ~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~  369 (457)
                      +.+.+++.++.+|||+|||+|.+++.+|+...+.+|+|+|+++.+++.|++|++.+  +..++++++.+|+.+.+.. ..
T Consensus        13 ~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~--gl~~~I~v~~gD~l~~~~~-~~   89 (244)
T 3gnl_A           13 EKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSS--GLTEQIDVRKGNGLAVIEK-KD   89 (244)
T ss_dssp             HHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--TCTTTEEEEECSGGGGCCG-GG
T ss_pred             HHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--CCCceEEEEecchhhccCc-cc
Confidence            55677788899999999999999999998655678999999999999999999984  3445799999999876532 12


Q ss_pred             CccEEEECCCCCCccHHHHHHHHhcC----CCCcEEEEeccCCCCCchhchhhHHHH
Q 044572          370 GSDVLVVDPPRKGLDSSLVHALQSIG----SAERKAKSLSESSSSMVKEEKRPWILR  422 (457)
Q Consensus       370 ~~D~vi~DPPR~Gl~~~v~~~l~~~~----~~~~ivyvs~~~~~c~~~~~~~~~~~~  422 (457)
                      .||+|++    +|+..+++..+..-.    .+...+.++.    -......+.|+..
T Consensus        90 ~~D~Ivi----agmGg~lI~~IL~~~~~~L~~~~~lIlq~----~~~~~~lr~~L~~  138 (244)
T 3gnl_A           90 AIDTIVI----AGMGGTLIRTILEEGAAKLAGVTKLILQP----NIAAWQLREWSEQ  138 (244)
T ss_dssp             CCCEEEE----EEECHHHHHHHHHHTGGGGTTCCEEEEEE----SSCHHHHHHHHHH
T ss_pred             cccEEEE----eCCchHHHHHHHHHHHHHhCCCCEEEEEc----CCChHHHHHHHHH
Confidence            5999887    677776555544321    2333344431    2234455666554

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.31  E-value=3.5e-12  Score=132.30  Aligned_cols=85  Identities=24%  Similarity=0.115  Sum_probs=70.9

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .++++|||+|||+|..++.+|... +..+|+|+|+++.+++.+++|++.+   +..|+.++++|+.+....+.+.||+|+
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~---g~~nv~v~~~Da~~l~~~~~~~FD~Il  180 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERW---GVSNAIVTNHAPAELVPHFSGFFDRIV  180 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH---TCSSEEEECCCHHHHHHHHTTCEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCceEEEeCCHHHhhhhccccCCEEE
Confidence            478999999999999999999753 2359999999999999999999984   346899999998765433346799999


Q ss_pred             ECCCCCCcc
Q 044572          376 VDPPRKGLD  384 (457)
Q Consensus       376 ~DPPR~Gl~  384 (457)
                      +|||.+|..
T Consensus       181 ~DaPCSg~G  189 (456)
T 3m4x_A          181 VDAPCSGEG  189 (456)
T ss_dssp             EECCCCCGG
T ss_pred             ECCCCCCcc
Confidence            999987654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.30  E-value=2.1e-11  Score=111.54  Aligned_cols=84  Identities=14%  Similarity=0.092  Sum_probs=69.3

Q ss_pred             hCCCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccE
Q 044572          295 YVPYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDV  373 (457)
Q Consensus       295 ~~~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~  373 (457)
                      .+.++.+|||+|||+|.+++.+++.. +..+|+|||+++.+++.|++|++.+  +...+++++++|+.+......+.||+
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~fD~   96 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL--NLIDRVTLIKDGHQNMDKYIDCPVKA   96 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHT--TCGGGEEEECSCGGGGGGTCCSCEEE
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCCeEEEECCHHHHhhhccCCceE
Confidence            35578999999999999999999863 2359999999999999999999874  23368999999987754333467999


Q ss_pred             EEECCCC
Q 044572          374 LVVDPPR  380 (457)
Q Consensus       374 vi~DPPR  380 (457)
                      |++|+|.
T Consensus        97 v~~~~~~  103 (197)
T 3eey_A           97 VMFNLGY  103 (197)
T ss_dssp             EEEEESB
T ss_pred             EEEcCCc
Confidence            9999976

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.30  E-value=2.2e-11  Score=122.46  Aligned_cols=104  Identities=18%  Similarity=0.187  Sum_probs=78.3

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .++.+|||+|||+|++++.+|... ...+|+|+|+|+.+++.|++|++.++   .++++|+++|+.+.... ...||+||
T Consensus       202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g---~~~i~~~~~D~~~~~~~-~~~~D~Ii  277 (354)
T 3tma_A          202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG---LSWIRFLRADARHLPRF-FPEVDRIL  277 (354)
T ss_dssp             CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT---CTTCEEEECCGGGGGGT-CCCCSEEE
T ss_pred             CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC---CCceEEEeCChhhCccc-cCCCCEEE
Confidence            367899999999999999999865 33689999999999999999999842   24899999999875432 24689999


Q ss_pred             ECCCCC---Ccc-------HHHHHHHHhcC-CCCcEEEEe
Q 044572          376 VDPPRK---GLD-------SSLVHALQSIG-SAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~---Gl~-------~~v~~~l~~~~-~~~~ivyvs  404 (457)
                      +|||+.   +-.       ..+++.+.+.- +.+.+++++
T Consensus       278 ~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t  317 (354)
T 3tma_A          278 ANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT  317 (354)
T ss_dssp             ECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             ECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            999964   211       34555555543 445555554

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.29  E-value=5.9e-12  Score=122.31  Aligned_cols=105  Identities=19%  Similarity=0.101  Sum_probs=80.4

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc---cCCcc
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW---LVGSD  372 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~---~~~~D  372 (457)
                      .++.+|||+|||+|.+++.+|... +..+|+|+|+++.+++.+++|++.+   +..|++++++|+.+....+   ...||
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~---g~~~v~~~~~D~~~~~~~~~~~~~~fD  158 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM---GVLNTIIINADMRKYKDYLLKNEIFFD  158 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHh---CCCcEEEEeCChHhcchhhhhccccCC
Confidence            478999999999999999999753 3369999999999999999999984   3458999999987653321   35799


Q ss_pred             EEEECCCCCCcc--------------------HHHHHHHHh-cCCCCcEEEEe
Q 044572          373 VLVVDPPRKGLD--------------------SSLVHALQS-IGSAERKAKSL  404 (457)
Q Consensus       373 ~vi~DPPR~Gl~--------------------~~v~~~l~~-~~~~~~ivyvs  404 (457)
                      +|++|||..|..                    .++++.+.+ +++.+.++|.+
T Consensus       159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st  211 (274)
T 3ajd_A          159 KILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST  211 (274)
T ss_dssp             EEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            999999988642                    344544443 55567778877

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.28  E-value=1.9e-11  Score=121.13  Aligned_cols=83  Identities=19%  Similarity=0.139  Sum_probs=69.6

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .++.+|||+|||+|..++.+|...+ ..+|+|+|+++.+++.+++|++.+   +..|++++++|+.+... ....||+|+
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~---g~~~v~~~~~D~~~~~~-~~~~fD~Il  192 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL---GVLNVILFHSSSLHIGE-LNVEFDKIL  192 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH---TCCSEEEESSCGGGGGG-GCCCEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHh---CCCeEEEEECChhhccc-ccccCCEEE
Confidence            4789999999999999999997642 368999999999999999999874   34579999999977543 345799999


Q ss_pred             ECCCCCCc
Q 044572          376 VDPPRKGL  383 (457)
Q Consensus       376 ~DPPR~Gl  383 (457)
                      +|||.+|.
T Consensus       193 ~d~Pcsg~  200 (315)
T 1ixk_A          193 LDAPCTGS  200 (315)
T ss_dssp             EECCTTST
T ss_pred             EeCCCCCc
Confidence            99997664

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.27  E-value=8.1e-11  Score=105.40  Aligned_cols=103  Identities=14%  Similarity=0.086  Sum_probs=77.9

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.+++.++...+..+|+|+|+++.+++.|++|++.+  +..+++ ++++|+.+.+....+.||+|++
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~~-~~~~d~~~~~~~~~~~~D~i~~  100 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINL--GVSDRI-AVQQGAPRAFDDVPDNPDVIFI  100 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTT--TCTTSE-EEECCTTGGGGGCCSCCSEEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHh--CCCCCE-EEecchHhhhhccCCCCCEEEE
Confidence            3678999999999999999998654569999999999999999999874  233488 8899987654432268999999


Q ss_pred             CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.+...  ..+++.+.+.-.+++.++++
T Consensus       101 ~~~~~~--~~~l~~~~~~L~~gG~l~~~  126 (178)
T 3hm2_A          101 GGGLTA--PGVFAAAWKRLPVGGRLVAN  126 (178)
T ss_dssp             CC-TTC--TTHHHHHHHTCCTTCEEEEE
T ss_pred             CCcccH--HHHHHHHHHhcCCCCEEEEE
Confidence            987544  34666665544466666665

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.27  E-value=8.9e-11  Score=110.03  Aligned_cols=103  Identities=14%  Similarity=0.018  Sum_probs=76.7

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccccCCccE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDV  373 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D~  373 (457)
                      .++.+|||+|||+|.+++.+|+..+ ..+|+|||+++.+++.+++|++.   +  .|++++++|+.+..  ......||+
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~---~--~~v~~~~~d~~~~~~~~~~~~~~D~  146 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE---R--RNIVPILGDATKPEEYRALVPKVDV  146 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS---C--TTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc---c--CCCEEEEccCCCcchhhcccCCceE
Confidence            3688999999999999999997632 36999999999999999999876   2  58999999998632  122357999


Q ss_pred             EEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          374 LVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       374 vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |++|+|.......+++.+.+.-.+++.++++
T Consensus       147 v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          147 IFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            9999995433334345444433366666654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.27  E-value=1.4e-11  Score=115.59  Aligned_cols=120  Identities=8%  Similarity=-0.061  Sum_probs=90.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc-c-cCCccEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS-W-LVGSDVLV  375 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~-~-~~~~D~vi  375 (457)
                      ++.+|||+|||+|.+++.+|.......|+|||+++.+++.|++|++.+   +..|++++++|+.+.+.. . .+.+|.|+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~---~l~nv~~~~~Da~~~l~~~~~~~~~d~v~  110 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEE---GLSNLRVMCHDAVEVLHKMIPDNSLRMVQ  110 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHT---TCSSEEEECSCHHHHHHHHSCTTCEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHh---CCCcEEEEECCHHHHHHHHcCCCChheEE
Confidence            578999999999999999998765568999999999999999999873   356899999999875332 1 35799888


Q ss_pred             EC--CC--CCC------ccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHH
Q 044572          376 VD--PP--RKG------LDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKE  425 (457)
Q Consensus       376 ~D--PP--R~G------l~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~  425 (457)
                      ++  +|  +..      ....+++.+.+.-.+++.++++     |+.....+.+...+..
T Consensus       111 ~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~-----td~~~~~~~~~~~~~~  165 (218)
T 3dxy_A          111 LFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA-----TDWEPYAEHMLEVMSS  165 (218)
T ss_dssp             EESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE-----ESCHHHHHHHHHHHHT
T ss_pred             EeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE-----eCCHHHHHHHHHHHHh
Confidence            85  33  222      1235777776644588899998     7766666655555443

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.26  E-value=1e-11  Score=129.05  Aligned_cols=104  Identities=18%  Similarity=0.124  Sum_probs=81.0

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .++.+|||+|||+|..++.+|...+ ..+|+|+|+++.+++.+++|++.++   .. +.++++|+.+......+.||+|+
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G---~~-v~~~~~Da~~l~~~~~~~FD~Il  175 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG---AP-LAVTQAPPRALAEAFGTYFHRVL  175 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC---CC-CEEECSCHHHHHHHHCSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---Ce-EEEEECCHHHhhhhccccCCEEE
Confidence            4789999999999999999997643 3589999999999999999999843   34 89999998765432346799999


Q ss_pred             ECCCCCCcc------------------------HHHHHHHHh-cCCCCcEEEEe
Q 044572          376 VDPPRKGLD------------------------SSLVHALQS-IGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~Gl~------------------------~~v~~~l~~-~~~~~~ivyvs  404 (457)
                      +|||.+|..                        .++++.+.. +++.+.++|.+
T Consensus       176 ~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT  229 (464)
T 3m6w_A          176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST  229 (464)
T ss_dssp             EECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            999987643                        234444443 35567888887

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.26  E-value=6.3e-11  Score=106.54  Aligned_cols=123  Identities=18%  Similarity=0.097  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572          282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS  361 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~  361 (457)
                      +..++.+++.+.....++.+|||+|||+|.+++.+++.  . +|+|||+|+.|++.      .      .+++++++|+.
T Consensus         7 ~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~--~-~v~gvD~s~~~~~~------~------~~~~~~~~d~~   71 (170)
T 3q87_B            7 GEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKR--N-TVVSTDLNIRALES------H------RGGNLVRADLL   71 (170)
T ss_dssp             CHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTT--S-EEEEEESCHHHHHT------C------SSSCEEECSTT
T ss_pred             CccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhc--C-cEEEEECCHHHHhc------c------cCCeEEECChh
Confidence            45667777775442235789999999999999999975  3 99999999999976      1      35789999998


Q ss_pred             cCcccccCCccEEEECCCCCCc-----------cHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhc
Q 044572          362 IEPLSWLVGSDVLVVDPPRKGL-----------DSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEAS  427 (457)
Q Consensus       362 ~~~~~~~~~~D~vi~DPPR~Gl-----------~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~  427 (457)
                      +....  +.||+|+.|||+.-.           ..++++.+.+.. +++.+++.     +......+.+..++.+.+
T Consensus        72 ~~~~~--~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~-----~~~~~~~~~l~~~l~~~g  140 (170)
T 3q87_B           72 CSINQ--ESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLL-----VIEANRPKEVLARLEERG  140 (170)
T ss_dssp             TTBCG--GGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEE-----EEGGGCHHHHHHHHHHTT
T ss_pred             hhccc--CCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEE-----EecCCCHHHHHHHHHHCC
Confidence            74332  579999999997521           113444444443 67777776     555555666666666554

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.26  E-value=5.3e-11  Score=111.37  Aligned_cols=122  Identities=11%  Similarity=0.001  Sum_probs=86.4

Q ss_pred             CCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEE
Q 044572          278 GQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH  356 (457)
Q Consensus       278 fQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~  356 (457)
                      ++........+ ..+... .++.+|||+|||+|.+++.+|+..+ ..+|++||+++.+++.|++|++.+  +..++++++
T Consensus        40 ~~~~~~~~~~l-~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~v~~~  115 (221)
T 3u81_A           40 MNVGDAKGQIM-DAVIRE-YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFA--GLQDKVTIL  115 (221)
T ss_dssp             GGCCHHHHHHH-HHHHHH-HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH--TCGGGEEEE
T ss_pred             cccCHHHHHHH-HHHHHh-cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHc--CCCCceEEE
Confidence            44555554444 444433 2578999999999999999997422 459999999999999999999874  234579999


Q ss_pred             EccCCcCccccc-----CCccEEEECCCCCCccH--HHHHHHHhcCCCCcEEEEe
Q 044572          357 NADNSIEPLSWL-----VGSDVLVVDPPRKGLDS--SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       357 ~~d~~~~~~~~~-----~~~D~vi~DPPR~Gl~~--~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++|+.+.+....     +.||+|++|........  +.++.+..+ .+++++++.
T Consensus       116 ~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~~L-kpgG~lv~~  169 (221)
T 3u81_A          116 NGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLL-RKGTVLLAD  169 (221)
T ss_dssp             ESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHTTCC-CTTCEEEES
T ss_pred             ECCHHHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhcccc-CCCeEEEEe
Confidence            999876544433     57999999987654432  233333234 477777775

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.26  E-value=1.7e-11  Score=128.21  Aligned_cols=83  Identities=17%  Similarity=0.139  Sum_probs=69.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      ++.+|||+|||+|..++.+|...+ ..+|+|+|+++.+++.+++|++.+   +..|++++++|+.+........||+|++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~---g~~nv~~~~~D~~~~~~~~~~~fD~Il~  193 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRC---GISNVALTHFDGRVFGAAVPEMFDAILL  193 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHH---TCCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc---CCCcEEEEeCCHHHhhhhccccCCEEEE
Confidence            689999999999999999998643 369999999999999999999884   3468999999997753223357999999


Q ss_pred             CCCCCCc
Q 044572          377 DPPRKGL  383 (457)
Q Consensus       377 DPPR~Gl  383 (457)
                      |||.+|.
T Consensus       194 D~PcSg~  200 (479)
T 2frx_A          194 DAPCSGE  200 (479)
T ss_dssp             ECCCCCG
T ss_pred             CCCcCCc
Confidence            9998764

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.26  E-value=1.3e-11  Score=119.71  Aligned_cols=140  Identities=15%  Similarity=0.094  Sum_probs=90.5

Q ss_pred             CCCCCCCHHHHHHHHH----HHHhhC--CCCCeEEEEcccccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHhhCCC
Q 044572          275 SSFGQANTRAFDILLR----KLQKYV--PYGASVTDLYAGAGVIGLSLAAA-RKCRSVKCVEINKESQLSFEKTVSRLPK  347 (457)
Q Consensus       275 ~~FfQ~n~~~~~~l~~----~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~-~~~~~V~gVE~~~~av~~A~~Na~~~~~  347 (457)
                      ..|++.+......++.    .+.+.+  .++.+|||+|||+|.+++.++.. ....+|+++|+++.+++.|++|++.+. 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-  159 (275)
T 1yb2_A           81 MYFGRVIRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY-  159 (275)
T ss_dssp             GGHHHHC------------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS-
T ss_pred             HHHHhhccccccccChhhHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcC-
Confidence            4555554444444333    333333  36889999999999999999986 334699999999999999999998730 


Q ss_pred             CCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHh
Q 044572          348 SVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEA  426 (457)
Q Consensus       348 ~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~  426 (457)
                       +.++++++++|+.+.+.  .+.||+|++|+|..   ..+++.+.+.-.+++.++++     +.......++...+.+.
T Consensus       160 -g~~~v~~~~~d~~~~~~--~~~fD~Vi~~~~~~---~~~l~~~~~~LkpgG~l~i~-----~~~~~~~~~~~~~l~~~  227 (275)
T 1yb2_A          160 -DIGNVRTSRSDIADFIS--DQMYDAVIADIPDP---WNHVQKIASMMKPGSVATFY-----LPNFDQSEKTVLSLSAS  227 (275)
T ss_dssp             -CCTTEEEECSCTTTCCC--SCCEEEEEECCSCG---GGSHHHHHHTEEEEEEEEEE-----ESSHHHHHHHHHHSGGG
T ss_pred             -CCCcEEEEECchhccCc--CCCccEEEEcCcCH---HHHHHHHHHHcCCCCEEEEE-----eCCHHHHHHHHHHHHHC
Confidence             24689999999987432  25799999999853   24556555543466666666     44344445555554443

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.24  E-value=3.8e-12  Score=122.71  Aligned_cols=82  Identities=17%  Similarity=0.127  Sum_probs=66.3

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCH-------HHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK-------ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-  368 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~-------~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-  368 (457)
                      .++.+|||+|||+|.+++.+|..+  .+|+|||+++       ++++.|++|++.+  +..++++++++|+.+.+..+. 
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~g--~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~--~~~~ri~~~~~d~~~~l~~~~~  157 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASLG--LTVTAFEQHPAVACLLSDGIRRALLNPETQ--DTAARINLHFGNAAEQMPALVK  157 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHTT--CCEEEEECCHHHHHHHHHHHHHHHHSHHHH--HHHTTEEEEESCHHHHHHHHHH
T ss_pred             CCcCeEEEeeCccCHHHHHHHHhC--CEEEEEECChhhhHHHHHHHHHHHhHHHhh--CCccCeEEEECCHHHHHHhhhc
Confidence            357899999999999999999853  4899999999       9999999998873  222359999999987654332 


Q ss_pred             --CCccEEEECCCCCC
Q 044572          369 --VGSDVLVVDPPRKG  382 (457)
Q Consensus       369 --~~~D~vi~DPPR~G  382 (457)
                        ..||+|++|||+..
T Consensus       158 ~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          158 TQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHCCCSEEEECCCC--
T ss_pred             cCCCccEEEECCCCCC
Confidence              57999999999754

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.24  E-value=2.9e-11  Score=119.79  Aligned_cols=124  Identities=15%  Similarity=0.096  Sum_probs=93.5

Q ss_pred             EECCCCCCCCCHHHHHHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCC
Q 044572          271 SLAPSSFGQANTRAFDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPK  347 (457)
Q Consensus       271 ~i~~~~FfQ~n~~~~~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~  347 (457)
                      .++..+|||.+.  ...++..+.+.+  .++.+|||+|||+|.+++.+|+..+ ..+|+|||+++++++.|++|++.+  
T Consensus        48 ~l~~~~f~q~~~--~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--  123 (317)
T 1dl5_A           48 SYDDGEEYSTSS--QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL--  123 (317)
T ss_dssp             EEECSSCEEEEC--CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT--
T ss_pred             cccCCCcceecc--CHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc--
Confidence            456788999763  233344444443  3689999999999999999998654 246999999999999999999873  


Q ss_pred             CCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          348 SVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       348 ~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                       +..+++++.+|+.+.... .+.||+|+++++...+...+.+   .++ ++++++++
T Consensus       124 -g~~~v~~~~~d~~~~~~~-~~~fD~Iv~~~~~~~~~~~~~~---~Lk-pgG~lvi~  174 (317)
T 1dl5_A          124 -GIENVIFVCGDGYYGVPE-FSPYDVIFVTVGVDEVPETWFT---QLK-EGGRVIVP  174 (317)
T ss_dssp             -TCCSEEEEESCGGGCCGG-GCCEEEEEECSBBSCCCHHHHH---HEE-EEEEEEEE
T ss_pred             -CCCCeEEEECChhhcccc-CCCeEEEEEcCCHHHHHHHHHH---hcC-CCcEEEEE
Confidence             345799999999875432 3679999999998777654332   444 77788887

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.24  E-value=1.7e-11  Score=116.93  Aligned_cols=127  Identities=17%  Similarity=0.090  Sum_probs=85.6

Q ss_pred             CCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhh--CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCC-c
Q 044572          278 GQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAA--RKCRSVKCVEINKESQLSFEKTVSRLPKSVDG-N  352 (457)
Q Consensus       278 fQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~--~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~-n  352 (457)
                      .+.....+..++..+.+.+.  ++.+|||+|||+|.+++.++..  ....+|+|+|+|+.+++.|++|+..+...... +
T Consensus        29 ~~~~~~la~~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~  108 (250)
T 1o9g_A           29 PAFPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTAR  108 (250)
T ss_dssp             CCCCHHHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhcccccc
Confidence            33345555667777766543  4679999999999999999976  33358999999999999999998762000111 1


Q ss_pred             -------------------------EE-------------EEEccCCcCccc----ccCCccEEEECCCCCCccH-----
Q 044572          353 -------------------------IS-------------WHNADNSIEPLS----WLVGSDVLVVDPPRKGLDS-----  385 (457)
Q Consensus       353 -------------------------v~-------------~~~~d~~~~~~~----~~~~~D~vi~DPPR~Gl~~-----  385 (457)
                                               ++             |+++|+.+....    ....||+|+.|||+.....     
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~  188 (250)
T 1o9g_A          109 ELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQV  188 (250)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCC
T ss_pred             chhhhhhhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccc
Confidence                                     66             999998875321    1237999999999643221     


Q ss_pred             ------HHHHHHHhcCCCCcEEEEe
Q 044572          386 ------SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       386 ------~v~~~l~~~~~~~~ivyvs  404 (457)
                            .+++.+.+.-.+++.++++
T Consensus       189 ~~~~~~~~l~~~~~~LkpgG~l~~~  213 (250)
T 1o9g_A          189 PGQPVAGLLRSLASALPAHAVIAVT  213 (250)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             cccHHHHHHHHHHHhcCCCcEEEEe
Confidence                  4555554433355555554

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.23  E-value=3.6e-11  Score=112.42  Aligned_cols=124  Identities=10%  Similarity=0.038  Sum_probs=89.7

Q ss_pred             CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEE
Q 044572          276 SFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNIS  354 (457)
Q Consensus       276 ~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~  354 (457)
                      .+++........+ ..+... .++.+|||+|||+|.+++.+|...+ ..+|++||+++++++.|++|++.+  +..++++
T Consensus        44 ~~~~~~~~~~~~l-~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~v~  119 (225)
T 3tr6_A           44 YAMQTAPEQAQLL-ALLVKL-MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKA--GLSDKIG  119 (225)
T ss_dssp             GGGSCCHHHHHHH-HHHHHH-HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHT--TCTTTEE
T ss_pred             CccccCHHHHHHH-HHHHHh-hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHC--CCCCceE
Confidence            4456666555444 444433 2578999999999999999997533 469999999999999999999874  3335699


Q ss_pred             EEEccCCcCccccc-----CCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          355 WHNADNSIEPLSWL-----VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       355 ~~~~d~~~~~~~~~-----~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++++|+.+.+....     ..||+|++|++...... +++.+..+-.+++++++.
T Consensus       120 ~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~~~~~~-~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          120 LRLSPAKDTLAELIHAGQAWQYDLIYIDADKANTDL-YYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             EEESCHHHHHHHHHTTTCTTCEEEEEECSCGGGHHH-HHHHHHHHEEEEEEEEEE
T ss_pred             EEeCCHHHHHHHhhhccCCCCccEEEECCCHHHHHH-HHHHHHHhcCCCcEEEEe
Confidence            99999976544332     67999999999655443 444444433467777664

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.23  E-value=7.9e-11  Score=111.24  Aligned_cols=118  Identities=8%  Similarity=0.077  Sum_probs=88.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572          281 NTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN  360 (457)
Q Consensus       281 n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~  360 (457)
                      .......+.. +... .++.+|||+|||+|.+++.+|......+|++||+++++++.|++|++..  +..++++++.+|+
T Consensus        56 ~~~~~~~l~~-~~~~-~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~v~~~~~d~  131 (232)
T 3ntv_A           56 DRLTLDLIKQ-LIRM-NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATY--HFENQVRIIEGNA  131 (232)
T ss_dssp             CHHHHHHHHH-HHHH-HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHT--TCTTTEEEEESCG
T ss_pred             CHHHHHHHHH-HHhh-cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEECCH
Confidence            3444444433 3332 3678999999999999999997434579999999999999999999874  3345899999999


Q ss_pred             CcCcc-cccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          361 SIEPL-SWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       361 ~~~~~-~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      .+.+. ...+.||+|++|.+...... +++.+.++-.+++++++
T Consensus       132 ~~~~~~~~~~~fD~V~~~~~~~~~~~-~l~~~~~~LkpgG~lv~  174 (232)
T 3ntv_A          132 LEQFENVNDKVYDMIFIDAAKAQSKK-FFEIYTPLLKHQGLVIT  174 (232)
T ss_dssp             GGCHHHHTTSCEEEEEEETTSSSHHH-HHHHHGGGEEEEEEEEE
T ss_pred             HHHHHhhccCCccEEEEcCcHHHHHH-HHHHHHHhcCCCeEEEE
Confidence            88765 44468999999998766543 55555544346777766

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.21  E-value=1.3e-10  Score=117.70  Aligned_cols=103  Identities=13%  Similarity=0.060  Sum_probs=77.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc-ccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS-WLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~-~~~~~D~vi~  376 (457)
                      ++.+|||+| |+|.+++.++......+|+|||+++.+++.|++|++.++   .++++++++|+.+.+.. ..+.||+||+
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g---~~~v~~~~~D~~~~l~~~~~~~fD~Vi~  247 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIG---YEDIEIFTFDLRKPLPDYALHKFDTFIT  247 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHT---CCCEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCEEEEEChhhhhchhhccCCccEEEE
Confidence            578999999 999999999976433699999999999999999998742   34899999999884332 2357999999


Q ss_pred             CCCCCCc-cHHHHHHHHh-cCCCCcEEEEe
Q 044572          377 DPPRKGL-DSSLVHALQS-IGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~Gl-~~~v~~~l~~-~~~~~~ivyvs  404 (457)
                      |||.... ...+++.+.+ +++.+++++++
T Consensus       248 ~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~  277 (373)
T 2qm3_A          248 DPPETLEAIRAFVGRGIATLKGPRCAGYFG  277 (373)
T ss_dssp             CCCSSHHHHHHHHHHHHHTBCSTTCEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHcccCCeEEEEE
Confidence            9997421 1234444444 44345475665

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.21  E-value=6e-11  Score=116.73  Aligned_cols=104  Identities=14%  Similarity=0.140  Sum_probs=77.1

Q ss_pred             CCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEc
Q 044572          279 QANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA  358 (457)
Q Consensus       279 Q~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~  358 (457)
                      ..+....+.+++.+.  +.++.+|||+|||+|.++..++..  ..+|+|||+++.+++.|++|++.+   ...|++++++
T Consensus        25 l~~~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~---~~~~v~~~~~   97 (299)
T 2h1r_A           25 LKNPGILDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYE---GYNNLEVYEG   97 (299)
T ss_dssp             ECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHT---TCCCEEC---
T ss_pred             ecCHHHHHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHc---CCCceEEEEC
Confidence            345556655555432  236889999999999999999975  459999999999999999998763   2368999999


Q ss_pred             cCCcCcccccCCccEEEECCCCCCccHHHHHHHH
Q 044572          359 DNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQ  392 (457)
Q Consensus       359 d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~  392 (457)
                      |+.+..   ...||+|+.|||+....+.+.+.+.
T Consensus        98 D~~~~~---~~~~D~Vv~n~py~~~~~~~~~ll~  128 (299)
T 2h1r_A           98 DAIKTV---FPKFDVCTANIPYKISSPLIFKLIS  128 (299)
T ss_dssp             -CCSSC---CCCCSEEEEECCGGGHHHHHHHHHH
T ss_pred             chhhCC---cccCCEEEEcCCcccccHHHHHHHh
Confidence            998753   2479999999999887665555553

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.21  E-value=1.7e-10  Score=110.26  Aligned_cols=120  Identities=8%  Similarity=0.002  Sum_probs=86.9

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEc
Q 044572          280 ANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA  358 (457)
Q Consensus       280 ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~  358 (457)
                      +..... .++..+... .++.+|||+|||+|..++.+|...+ ..+|++||+++++++.|++|++.+  +..++++++.+
T Consensus        47 ~~~~~~-~~l~~l~~~-~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--g~~~~v~~~~~  122 (248)
T 3tfw_A           47 VAANQG-QFLALLVRL-TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLA--GVDQRVTLREG  122 (248)
T ss_dssp             CCHHHH-HHHHHHHHH-HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHT--TCTTTEEEEES
T ss_pred             cCHHHH-HHHHHHHhh-cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEEc
Confidence            334443 344444433 3678999999999999999997643 469999999999999999999874  33458999999


Q ss_pred             cCCcCccccc--CCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          359 DNSIEPLSWL--VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       359 d~~~~~~~~~--~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+.+.+....  ..||+|++|.+...... .++.+.++-.+++++++.
T Consensus       123 d~~~~l~~~~~~~~fD~V~~d~~~~~~~~-~l~~~~~~LkpGG~lv~~  169 (248)
T 3tfw_A          123 PALQSLESLGECPAFDLIFIDADKPNNPH-YLRWALRYSRPGTLIIGD  169 (248)
T ss_dssp             CHHHHHHTCCSCCCCSEEEECSCGGGHHH-HHHHHHHTCCTTCEEEEE
T ss_pred             CHHHHHHhcCCCCCeEEEEECCchHHHHH-HHHHHHHhcCCCeEEEEe
Confidence            9977544332  37999999998655433 555555544466766664

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.20  E-value=1.3e-10  Score=108.46  Aligned_cols=121  Identities=9%  Similarity=-0.050  Sum_probs=86.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~  376 (457)
                      ++.+|||+|||+|.+++.+|......+|+|||+++.+++.|++|++.+   +..|++++++|+.+....+ .+.+|.|++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~---~~~nv~~~~~d~~~l~~~~~~~~~d~v~~  114 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS---EAQNVKLLNIDADTLTDVFEPGEVKRVYL  114 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHS---CCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHc---CCCCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence            578999999999999999998754569999999999999999999873   3468999999998732111 246898887


Q ss_pred             CCCC----------CCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHh
Q 044572          377 DPPR----------KGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEA  426 (457)
Q Consensus       377 DPPR----------~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~  426 (457)
                      +.|-          .-....+++.+...-.+++.++++     +............+...
T Consensus       115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~-----td~~~~~~~~~~~~~~~  169 (213)
T 2fca_A          115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK-----TDNRGLFEYSLKSFSEY  169 (213)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE-----ESCHHHHHHHHHHHHHH
T ss_pred             ECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE-----eCCHHHHHHHHHHHHHC
Confidence            5331          111345666666644477777776     54444444444544444

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.20  E-value=8.6e-11  Score=110.08  Aligned_cols=125  Identities=15%  Similarity=0.033  Sum_probs=91.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcE
Q 044572          275 SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNI  353 (457)
Q Consensus       275 ~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv  353 (457)
                      ..+++.+......+ ..+... .++.+|||+|||+|.+++.+|...+ ..+|+++|+++.+++.|++|++.+  +..+++
T Consensus        48 ~~~~~~~~~~~~~l-~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g~~~~i  123 (229)
T 2avd_A           48 QGDSMMTCEQAQLL-ANLARL-IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA--EAEHKI  123 (229)
T ss_dssp             TGGGSCCHHHHHHH-HHHHHH-TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT--TCTTTE
T ss_pred             CCCCccCHHHHHHH-HHHHHh-cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC--CCCCeE
Confidence            45667777766544 444443 3578999999999999999997533 469999999999999999999874  334689


Q ss_pred             EEEEccCCcCccccc-----CCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          354 SWHNADNSIEPLSWL-----VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       354 ~~~~~d~~~~~~~~~-----~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +++.+|+.+.+..+.     ..||+|++|++...... .++.+.++-.+++++++.
T Consensus       124 ~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~~~~~~~-~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          124 DLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSA-YYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             EEEESCHHHHHHHHHHTTCTTCEEEEEECSCSTTHHH-HHHHHHHHEEEEEEEEEE
T ss_pred             EEEEcCHHHHHHHHHhcCCCCCccEEEECCCHHHHHH-HHHHHHHHcCCCeEEEEE
Confidence            999999876543321     57999999999765544 444444433366666663

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.19  E-value=8e-11  Score=122.37  Aligned_cols=110  Identities=17%  Similarity=0.129  Sum_probs=85.5

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-CCccEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-VGSDVL  374 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-~~~D~v  374 (457)
                      .++.+|||+|||+|..++.+|...+. .+|+|+|+++.+++.+++|++.+   +..|++++++|+.+....+. +.||+|
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~---g~~~v~~~~~D~~~~~~~~~~~~fD~V  334 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM---GIKIVKPLVKDARKAPEIIGEEVADKV  334 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT---TCCSEEEECSCTTCCSSSSCSSCEEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc---CCCcEEEEEcChhhcchhhccCCCCEE
Confidence            47899999999999999999986433 69999999999999999999984   34689999999987543233 569999


Q ss_pred             EECCCCCCcc------------------------HHHHHHHHh-cCCCCcEEEEeccCCCCCchh
Q 044572          375 VVDPPRKGLD------------------------SSLVHALQS-IGSAERKAKSLSESSSSMVKE  414 (457)
Q Consensus       375 i~DPPR~Gl~------------------------~~v~~~l~~-~~~~~~ivyvs~~~~~c~~~~  414 (457)
                      ++|||..|..                        ..+++.+.. +++.+.++|++     |+...
T Consensus       335 l~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~t-----cs~~~  394 (450)
T 2yxl_A          335 LLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTT-----CSIFK  394 (450)
T ss_dssp             EEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEE-----SCCCG
T ss_pred             EEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe-----CCCCh
Confidence            9999987753                        234454444 34567888887     76543

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.19  E-value=1.1e-10  Score=105.41  Aligned_cols=120  Identities=17%  Similarity=0.180  Sum_probs=86.1

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.+++.++...  .+|+++|+++.+++.|++|++.+  +...+++++++|+.+.+.. ...||+|++
T Consensus        32 ~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~-~~~~D~v~~  106 (192)
T 1l3i_A           32 GKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRH--GLGDNVTLMEGDAPEALCK-IPDIDIAVV  106 (192)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHT--TCCTTEEEEESCHHHHHTT-SCCEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHc--CCCcceEEEecCHHHhccc-CCCCCEEEE
Confidence            468899999999999999999754  69999999999999999999874  2236899999998763222 247999999


Q ss_pred             CCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhc
Q 044572          377 DPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEAS  427 (457)
Q Consensus       377 DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~  427 (457)
                      +.+...+ ..+++.+.+.-.+++.+++.     .........+...+.+.+
T Consensus       107 ~~~~~~~-~~~l~~~~~~l~~gG~l~~~-----~~~~~~~~~~~~~l~~~g  151 (192)
T 1l3i_A          107 GGSGGEL-QEILRIIKDKLKPGGRIIVT-----AILLETKFEAMECLRDLG  151 (192)
T ss_dssp             SCCTTCH-HHHHHHHHHTEEEEEEEEEE-----ECBHHHHHHHHHHHHHTT
T ss_pred             CCchHHH-HHHHHHHHHhcCCCcEEEEE-----ecCcchHHHHHHHHHHCC
Confidence            9886544 34566655543356555554     222334455555555544

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.19  E-value=9.6e-11  Score=110.18  Aligned_cols=117  Identities=12%  Similarity=0.070  Sum_probs=86.9

Q ss_pred             HHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCC-CcEEEEEccC
Q 044572          285 FDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVD-GNISWHNADN  360 (457)
Q Consensus       285 ~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~-~nv~~~~~d~  360 (457)
                      ...++..+.....  ++.+|||+|||+|..++.+|...+ ..+|++||+++++++.|++|++.+  +.. ++++++++|+
T Consensus        41 ~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g~~~~~i~~~~gda  118 (221)
T 3dr5_A           41 TGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREA--GYSPSRVRFLLSRP  118 (221)
T ss_dssp             HHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHT--TCCGGGEEEECSCH
T ss_pred             HHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCcCcEEEEEcCH
Confidence            3455566655543  234999999999999999998532 469999999999999999999884  333 5899999999


Q ss_pred             CcCcccc-cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          361 SIEPLSW-LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       361 ~~~~~~~-~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .+.+... .+.||+|++|.+...... .++.+.++-.+++++.+.
T Consensus       119 ~~~l~~~~~~~fD~V~~d~~~~~~~~-~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          119 LDVMSRLANDSYQLVFGQVSPMDLKA-LVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             HHHGGGSCTTCEEEEEECCCTTTHHH-HHHHHHHHEEEEEEEEET
T ss_pred             HHHHHHhcCCCcCeEEEcCcHHHHHH-HHHHHHHHcCCCcEEEEe
Confidence            8766544 468999999998665443 454444433477777763

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.18  E-value=2.8e-10  Score=110.78  Aligned_cols=138  Identities=15%  Similarity=0.078  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeC-CHHHHHHHHHHHhhCC--CCCC-----CcE
Q 044572          284 AFDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEI-NKESQLSFEKTVSRLP--KSVD-----GNI  353 (457)
Q Consensus       284 ~~~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~-~~~av~~A~~Na~~~~--~~~~-----~nv  353 (457)
                      .++.|.+.+.+..  .++.+|||+|||+|.+++.+++. ++.+|+|+|+ ++.+++.|++|++.|.  .++.     +++
T Consensus        63 ~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v  141 (281)
T 3bzb_A           63 GARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASP  141 (281)
T ss_dssp             HHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCC
T ss_pred             HHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCe
Confidence            4566667766653  36789999999999999999974 5669999999 8999999999995421  1122     378


Q ss_pred             EEEEccCCcCcccc-----cCCccEEEE-CCCCC-CccHHHHHHHHhcCC---C--CcEEEEeccCCCCCchh-----ch
Q 044572          354 SWHNADNSIEPLSW-----LVGSDVLVV-DPPRK-GLDSSLVHALQSIGS---A--ERKAKSLSESSSSMVKE-----EK  416 (457)
Q Consensus       354 ~~~~~d~~~~~~~~-----~~~~D~vi~-DPPR~-Gl~~~v~~~l~~~~~---~--~~ivyvs~~~~~c~~~~-----~~  416 (457)
                      +++..|..+.....     ...||+||+ |.... .....+++.+..+-.   +  ++.+|+.     +.+..     ..
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~-----~~~~~~~~~~~~  216 (281)
T 3bzb_A          142 KVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVT-----FTHHRPHLAERD  216 (281)
T ss_dssp             EEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEE-----ECC--------C
T ss_pred             EEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEE-----EEeeecccchhH
Confidence            88876655432221     257999887 88763 223456777766544   5  6766665     44432     24


Q ss_pred             hhHHHHHHHhc
Q 044572          417 RPWILRAKEAS  427 (457)
Q Consensus       417 ~~~~~~~~~~~  427 (457)
                      ..|+..+.+.+
T Consensus       217 ~~~~~~l~~~G  227 (281)
T 3bzb_A          217 LAFFRLVNADG  227 (281)
T ss_dssp             THHHHHHHHST
T ss_pred             HHHHHHHHhcC
Confidence            56777766654

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.18  E-value=5.1e-11  Score=121.37  Aligned_cols=94  Identities=19%  Similarity=0.171  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCC--------------------------------------C
Q 044572          284 AFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKC--------------------------------------R  323 (457)
Q Consensus       284 ~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~--------------------------------------~  323 (457)
                      ..+.|...++....  ++..|||++||+|+|.+.+|..+.-                                      .
T Consensus       179 l~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  258 (385)
T 3ldu_A          179 IRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKF  258 (385)
T ss_dssp             CCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCC
T ss_pred             CcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCc
Confidence            34556666655543  6789999999999999999875311                                      3


Q ss_pred             EEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCC
Q 044572          324 SVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK  381 (457)
Q Consensus       324 ~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~  381 (457)
                      +|+|+|+|+.|++.|++|++.+  +..++++|+++|+.+...  ...||+||+|||+.
T Consensus       259 ~V~GvDid~~ai~~Ar~Na~~~--gl~~~i~~~~~D~~~l~~--~~~~D~Iv~NPPyg  312 (385)
T 3ldu_A          259 KIYGYDIDEESIDIARENAEIA--GVDEYIEFNVGDATQFKS--EDEFGFIITNPPYG  312 (385)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHH--TCGGGEEEEECCGGGCCC--SCBSCEEEECCCCC
T ss_pred             eEEEEECCHHHHHHHHHHHHHc--CCCCceEEEECChhhcCc--CCCCcEEEECCCCc
Confidence            6999999999999999999884  333579999999987643  24799999999964

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.17  E-value=2.3e-10  Score=106.85  Aligned_cols=121  Identities=8%  Similarity=0.001  Sum_probs=86.9

Q ss_pred             CCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044572          279 QANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN  357 (457)
Q Consensus       279 Q~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~  357 (457)
                      +...... .++..+... .++.+|||+|||+|..++.+|...+ ..+|++||+++.+++.|++|++..  +..+++++++
T Consensus        41 ~~~~~~~-~~l~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~v~~~~  116 (223)
T 3duw_A           41 DVSPTQG-KFLQLLVQI-QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERA--NLNDRVEVRT  116 (223)
T ss_dssp             SCCHHHH-HHHHHHHHH-HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEE
T ss_pred             ccCHHHH-HHHHHHHHh-hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEE
Confidence            3344443 344444433 3578999999999999999998643 359999999999999999999874  3335699999


Q ss_pred             ccCCcCccccc----CCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          358 ADNSIEPLSWL----VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       358 ~d~~~~~~~~~----~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|+.+.+..+.    ..||+|++|++..... .+++.+.++-.+++++++.
T Consensus       117 ~d~~~~~~~~~~~~~~~fD~v~~d~~~~~~~-~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A          117 GLALDSLQQIENEKYEPFDFIFIDADKQNNP-AYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             SCHHHHHHHHHHTTCCCCSEEEECSCGGGHH-HHHHHHHHTCCTTCEEEEE
T ss_pred             cCHHHHHHHHHhcCCCCcCEEEEcCCcHHHH-HHHHHHHHhcCCCcEEEEe
Confidence            99976543321    4699999999855433 4555555544577777764

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.16  E-value=1.9e-10  Score=109.59  Aligned_cols=119  Identities=13%  Similarity=0.050  Sum_probs=86.6

Q ss_pred             CCCCeEEEEcccccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAA-RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~-~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .++.+|||+|||+|.+++.++.. ....+|+++|+++++++.|++|++.++  ..++++++++|+.+.+.  ...||+|+
T Consensus        92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~--~~~~D~v~  167 (255)
T 3mb5_A           92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG--FDDRVTIKLKDIYEGIE--EENVDHVI  167 (255)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT--CTTTEEEECSCGGGCCC--CCSEEEEE
T ss_pred             CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC--CCCceEEEECchhhccC--CCCcCEEE
Confidence            46889999999999999999987 335699999999999999999998742  33459999999986532  24699999


Q ss_pred             ECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhc
Q 044572          376 VDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEAS  427 (457)
Q Consensus       376 ~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~  427 (457)
                      +|+|..   ..+++.+.+.-.+++.+++.     +........+...+++..
T Consensus       168 ~~~~~~---~~~l~~~~~~L~~gG~l~~~-----~~~~~~~~~~~~~l~~~g  211 (255)
T 3mb5_A          168 LDLPQP---ERVVEHAAKALKPGGFFVAY-----TPCSNQVMRLHEKLREFK  211 (255)
T ss_dssp             ECSSCG---GGGHHHHHHHEEEEEEEEEE-----ESSHHHHHHHHHHHHHTG
T ss_pred             ECCCCH---HHHHHHHHHHcCCCCEEEEE-----ECCHHHHHHHHHHHHHcC
Confidence            999953   23444444433366666665     433444555565555554

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.16  E-value=1.7e-10  Score=117.42  Aligned_cols=91  Identities=10%  Similarity=0.060  Sum_probs=71.6

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCC--------------------------------------CEE
Q 044572          286 DILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKC--------------------------------------RSV  325 (457)
Q Consensus       286 ~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~--------------------------------------~~V  325 (457)
                      +.|...++.+.  .++..|||.+||+|+|.+.+|..+.-                                      .+|
T Consensus       180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v  259 (384)
T 3ldg_A          180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI  259 (384)
T ss_dssp             HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence            44445444443  36789999999999999999975321                                      259


Q ss_pred             EEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCC
Q 044572          326 KCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPR  380 (457)
Q Consensus       326 ~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR  380 (457)
                      +|+|+|+.|++.|++|++.+  +..++++|+++|+.+...  ...||+||+|||+
T Consensus       260 ~GvDid~~al~~Ar~Na~~~--gl~~~I~~~~~D~~~l~~--~~~fD~Iv~NPPY  310 (384)
T 3ldg_A          260 SGFDFDGRMVEIARKNAREV--GLEDVVKLKQMRLQDFKT--NKINGVLISNPPY  310 (384)
T ss_dssp             EEEESCHHHHHHHHHHHHHT--TCTTTEEEEECCGGGCCC--CCCSCEEEECCCC
T ss_pred             EEEECCHHHHHHHHHHHHHc--CCCCceEEEECChHHCCc--cCCcCEEEECCch
Confidence            99999999999999999984  344579999999987643  2479999999996

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.15  E-value=6.1e-11  Score=121.06  Aligned_cols=93  Identities=13%  Similarity=0.078  Sum_probs=72.6

Q ss_pred             HHHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCC--------------------------------------CE
Q 044572          285 FDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKC--------------------------------------RS  324 (457)
Q Consensus       285 ~~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~--------------------------------------~~  324 (457)
                      .+.|...++...  .++..|||++||+|+|.+.+|..+.-                                      .+
T Consensus       186 ~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  265 (393)
T 3k0b_A          186 KETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN  265 (393)
T ss_dssp             CHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce
Confidence            344555554443  36789999999999999999975321                                      35


Q ss_pred             EEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCC
Q 044572          325 VKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK  381 (457)
Q Consensus       325 V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~  381 (457)
                      |+|+|+|+.|++.|++|++.+  +..++++++++|+.+...  ...||+||+|||+.
T Consensus       266 V~GvDid~~al~~Ar~Na~~~--gl~~~I~~~~~D~~~~~~--~~~fD~Iv~NPPYg  318 (393)
T 3k0b_A          266 IIGGDIDARLIEIAKQNAVEA--GLGDLITFRQLQVADFQT--EDEYGVVVANPPYG  318 (393)
T ss_dssp             EEEEESCHHHHHHHHHHHHHT--TCTTCSEEEECCGGGCCC--CCCSCEEEECCCCC
T ss_pred             EEEEECCHHHHHHHHHHHHHc--CCCCceEEEECChHhCCC--CCCCCEEEECCCCc
Confidence            999999999999999999984  334569999999987643  24799999999963

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.14  E-value=4.1e-10  Score=108.62  Aligned_cols=106  Identities=11%  Similarity=0.083  Sum_probs=76.5

Q ss_pred             hhCCCCCeEEEEcccccHHHHHHHhhCC--CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCc
Q 044572          294 KYVPYGASVTDLYAGAGVIGLSLAAARK--CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS  371 (457)
Q Consensus       294 ~~~~~~~~vLDl~cG~G~~sl~lA~~~~--~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~  371 (457)
                      .++++|.+|||+|||+|.+++.+++..+  ..+|+|||+|+.|++.|+++++..  +...+++|+++|+.+..   .+.+
T Consensus        66 ~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~--~~~~~v~~~~~D~~~~~---~~~~  140 (261)
T 4gek_A           66 RFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY--KAPTPVDVIEGDIRDIA---IENA  140 (261)
T ss_dssp             HHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTS--CCSSCEEEEESCTTTCC---CCSE
T ss_pred             HhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhh--ccCceEEEeeccccccc---cccc
Confidence            3466899999999999999999997532  238999999999999999998864  33468999999998753   2569


Q ss_pred             cEEEECCCCCCcc----HHHHHHHHhcCCCCcEEEEe
Q 044572          372 DVLVVDPPRKGLD----SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       372 D~vi~DPPR~Gl~----~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+|++.=--.-+.    ..+++.+.+.-.+++++.++
T Consensus       141 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~  177 (261)
T 4gek_A          141 SMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLS  177 (261)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEE
Confidence            9988742100011    13455555543467766664

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.13  E-value=2.6e-10  Score=107.37  Aligned_cols=122  Identities=16%  Similarity=0.105  Sum_probs=89.2

Q ss_pred             CCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044572          278 GQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN  357 (457)
Q Consensus       278 fQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~  357 (457)
                      +.........+...+ .. .++.+|||+|||+|.+++.+|...+..+|+++|+++.+++.|++|++.+  +..++++++.
T Consensus        36 ~~~~~~~~~~l~~~~-~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~v~~~~  111 (233)
T 2gpy_A           36 PIMDLLGMESLLHLL-KM-AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKAL--GLESRIELLF  111 (233)
T ss_dssp             CCCCHHHHHHHHHHH-HH-HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHT--TCTTTEEEEC
T ss_pred             CCcCHHHHHHHHHHH-hc-cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEE
Confidence            344555555544433 32 3678999999999999999998754469999999999999999999874  2335799999


Q ss_pred             ccCCcCcccc--cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          358 ADNSIEPLSW--LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       358 ~d~~~~~~~~--~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|+.+.+...  .+.||+|++|.+..... .+++.+..+-.++++++++
T Consensus       112 ~d~~~~~~~~~~~~~fD~I~~~~~~~~~~-~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          112 GDALQLGEKLELYPLFDVLFIDAAKGQYR-RFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             SCGGGSHHHHTTSCCEEEEEEEGGGSCHH-HHHHHHGGGEEEEEEEEEE
T ss_pred             CCHHHHHHhcccCCCccEEEECCCHHHHH-HHHHHHHHHcCCCeEEEEE
Confidence            9998764433  35799999999865443 4555555543467777765

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.13  E-value=3.8e-10  Score=107.40  Aligned_cols=108  Identities=13%  Similarity=0.082  Sum_probs=77.5

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC-----CCCCcEEEEEccCCcCcccc--cC
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK-----SVDGNISWHNADNSIEPLSW--LV  369 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~-----~~~~nv~~~~~d~~~~~~~~--~~  369 (457)
                      .++.+|||+|||+|.+++.+|.......|+|||+++.+++.|++|++.+..     ++..|++++++|+.+.+...  ..
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~  127 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG  127 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence            467899999999999999999865445899999999999999999876300     03468999999998755432  24


Q ss_pred             CccEEEEC-C-C--------CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          370 GSDVLVVD-P-P--------RKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       370 ~~D~vi~D-P-P--------R~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .+|.|+++ | |        |..+...+++.+..+-.+++++++.
T Consensus       128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence            67766543 3 2        1223346666666544477777775

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.13  E-value=4.7e-11  Score=113.87  Aligned_cols=124  Identities=11%  Similarity=-0.015  Sum_probs=90.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEE
Q 044572          276 SFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNIS  354 (457)
Q Consensus       276 ~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~  354 (457)
                      .+++........|. .+... .++.+|||+|||+|..++.+|...+ ..+|++||+++++++.|++|++.+  +..++++
T Consensus        40 ~~~~i~~~~~~~l~-~l~~~-~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--g~~~~i~  115 (242)
T 3r3h_A           40 ANMQVAPEQAQFMQ-MLIRL-TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREA--KQEHKIK  115 (242)
T ss_dssp             GGTSCCHHHHHHHH-HHHHH-HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHT--TCTTTEE
T ss_pred             CCCccCHHHHHHHH-HHHhh-cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEE
Confidence            45666666655544 34333 2578999999999999999998542 469999999999999999999884  3346899


Q ss_pred             EEEccCCcCcccc-----cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          355 WHNADNSIEPLSW-----LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       355 ~~~~d~~~~~~~~-----~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++.+|+.+.+...     .+.||+|++|.+..... ..++.+..+-.+++++.+.
T Consensus       116 ~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~~~~~-~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          116 LRLGPALDTLHSLLNEGGEHQFDFIFIDADKTNYL-NYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             EEESCHHHHHHHHHHHHCSSCEEEEEEESCGGGHH-HHHHHHHHHEEEEEEEEEE
T ss_pred             EEEcCHHHHHHHHhhccCCCCEeEEEEcCChHHhH-HHHHHHHHhcCCCeEEEEE
Confidence            9999997765443     36899999999854433 3444444433467776663

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.12  E-value=3.2e-10  Score=115.17  Aligned_cols=128  Identities=17%  Similarity=0.194  Sum_probs=86.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhC-----CCC
Q 044572          274 PSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL-----PKS  348 (457)
Q Consensus       274 ~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~-----~~~  348 (457)
                      ...|-..+......+++.+.  +.++++|||||||+|.+++.+|...++.+|+|||+++.+++.|++|++..     .++
T Consensus       151 ~~vYGEt~~~~i~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~G  228 (438)
T 3uwp_A          151 PEVYGETSFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG  228 (438)
T ss_dssp             GGGGGGTHHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcccCCCCHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            34444555555555555431  34789999999999999999998777778999999999999999876320     011


Q ss_pred             C-CCcEEEEEccCCcCcccc-cCCccEEEECCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          349 V-DGNISWHNADNSIEPLSW-LVGSDVLVVDPPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       349 ~-~~nv~~~~~d~~~~~~~~-~~~~D~vi~DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      . ..+|+|+++|+.+..... ...+|+|+++++...-  ...+.+..+.++ +++.+.++
T Consensus       229 l~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLK-PGGrIVss  287 (438)
T 3uwp_A          229 KKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMK-EGGRIVSS  287 (438)
T ss_dssp             BCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSC-TTCEEEES
T ss_pred             CCCCCeEEEECcccCCccccccCCccEEEEcccccCchHHHHHHHHHHcCC-CCcEEEEe
Confidence            1 268999999998753211 1479999999987531  112333333455 55555543

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.12  E-value=4.6e-10  Score=107.24  Aligned_cols=123  Identities=15%  Similarity=0.049  Sum_probs=88.9

Q ss_pred             CCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEE
Q 044572          277 FGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISW  355 (457)
Q Consensus       277 FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~  355 (457)
                      +.+....... ++..+.... ++.+|||+|||+|..++.+|.... ..+|++||+++++++.|++|++.+  +..+++++
T Consensus        60 ~~~~~~~~~~-ll~~l~~~~-~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~~~~i~~  135 (247)
T 1sui_A           60 IMTTSADEGQ-FLSMLLKLI-NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA--GVDHKIDF  135 (247)
T ss_dssp             GGSCCHHHHH-HHHHHHHHT-TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT--TCGGGEEE
T ss_pred             CCCcCHHHHH-HHHHHHHhh-CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCCeEE
Confidence            5566665544 445555443 578999999999999999998632 359999999999999999999874  33468999


Q ss_pred             EEccCCcCcccc------cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          356 HNADNSIEPLSW------LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       356 ~~~d~~~~~~~~------~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.+|+.+.+...      .+.||+|++|.+..... ..++.+..+-.+++++.+.
T Consensus       136 ~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~~~~-~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          136 REGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYL-NYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             EESCHHHHHHHHHHSGGGTTCBSEEEECSCSTTHH-HHHHHHHHHBCTTCCEEEE
T ss_pred             EECCHHHHHHHHHhccCCCCCEEEEEEcCchHHHH-HHHHHHHHhCCCCeEEEEe
Confidence            999997754433      36799999998865443 3454444433466666653

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.12  E-value=3.1e-11  Score=116.18  Aligned_cols=84  Identities=19%  Similarity=0.138  Sum_probs=65.3

Q ss_pred             CCC--CeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCC----CCC-C-CcEEEEEccCCcCccccc
Q 044572          297 PYG--ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP----KSV-D-GNISWHNADNSIEPLSWL  368 (457)
Q Consensus       297 ~~~--~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~----~~~-~-~nv~~~~~d~~~~~~~~~  368 (457)
                      .++  .+|||+|||+|.+++.+|.+ ++ +|++||+++.+++.+++|++...    .+. . .+++++++|+.+++..+.
T Consensus        85 ~~g~~~~VLDl~~G~G~dal~lA~~-g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~  162 (258)
T 2oyr_A           85 KGDYLPDVVDATAGLGRDAFVLASV-GC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT  162 (258)
T ss_dssp             BTTBCCCEEETTCTTCHHHHHHHHH-TC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCS
T ss_pred             cCCCCCEEEEcCCcCCHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCc
Confidence            356  89999999999999999986 33 79999999988777777754321    011 1 579999999988665444


Q ss_pred             CCccEEEECCCCCC
Q 044572          369 VGSDVLVVDPPRKG  382 (457)
Q Consensus       369 ~~~D~vi~DPPR~G  382 (457)
                      ..||+|++|||+..
T Consensus       163 ~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          163 PRPQVVYLDPMFPH  176 (258)
T ss_dssp             SCCSEEEECCCCCC
T ss_pred             ccCCEEEEcCCCCC
Confidence            57999999999754

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.11  E-value=3.7e-10  Score=109.76  Aligned_cols=108  Identities=12%  Similarity=0.049  Sum_probs=81.8

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC-CCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS-VDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~-~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      ....+|||+|||+|.++..+++..+..+|++||+++++++.|++|+....++ ...+++++.+|+.+.+....+.||+|+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            3578999999999999999997645679999999999999999997532111 236899999999876543346799999


Q ss_pred             ECCCCCCc------cHHHHHHHHhcCCCCcEEEEe
Q 044572          376 VDPPRKGL------DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~Gl------~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|+|....      ..++++.+.+.-.+++++.+.
T Consensus       154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~  188 (275)
T 1iy9_A          154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (275)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            99985311      245666666544477777776

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.11  E-value=2.7e-10  Score=111.94  Aligned_cols=108  Identities=12%  Similarity=0.032  Sum_probs=78.5

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC-CCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS-VDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~-~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      ..+.+|||+|||+|.++..+++..+..+|++||+|+.+++.|++|+...... ...+++++.+|+.+.+....+.||+|+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            4568999999999999999997645679999999999999999997531001 136899999998775443346799999


Q ss_pred             ECCCCC--C-----ccHHHHHHHHhcCCCCcEEEEe
Q 044572          376 VDPPRK--G-----LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~--G-----l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|+|..  +     ...++++.+.+.-.+++++.+.
T Consensus       169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  204 (296)
T 1inl_A          169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  204 (296)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            999743  2     2245666666544466666665

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.10  E-value=8.6e-10  Score=102.46  Aligned_cols=104  Identities=15%  Similarity=0.093  Sum_probs=75.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCC----CcEEEEEccCCcCcccccCCccE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVD----GNISWHNADNSIEPLSWLVGSDV  373 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~----~nv~~~~~d~~~~~~~~~~~~D~  373 (457)
                      ++.+|||+|||+|.++..++...+..+|+|||+|+.+++.|++++..++  ..    .+++++++|+..... ..+.||+
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~v~~~~~d~~~~~~-~~~~fD~  105 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDR--LPEMQRKRISLFQSSLVYRDK-RFSGYDA  105 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGG--SCHHHHTTEEEEECCSSSCCG-GGTTCSE
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhc--cccccCcceEEEeCccccccc-ccCCCCE
Confidence            5789999999999999999976544699999999999999999987531  11    279999999865432 2368999


Q ss_pred             EEECCCCCCcc----HHHHHHHHhcCCCCcEEEEe
Q 044572          374 LVVDPPRKGLD----SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       374 vi~DPPR~Gl~----~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |++.-.-.-+.    ..+++.+.+...+++++++.
T Consensus       106 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~  140 (219)
T 3jwg_A          106 ATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST  140 (219)
T ss_dssp             EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             EEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence            99754422222    24566666655567665554

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.10  E-value=6.2e-10  Score=105.38  Aligned_cols=104  Identities=14%  Similarity=0.018  Sum_probs=79.7

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--cccCCcc
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSD  372 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~~~~~D  372 (457)
                      +++|++|||+|||+|.++.++|+..| ..+|+|||+++++++.++++++..     .|+..+.+|+.....  .....+|
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~-----~ni~~V~~d~~~p~~~~~~~~~vD  149 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR-----RNIFPILGDARFPEKYRHLVEGVD  149 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC-----TTEEEEESCTTCGGGGTTTCCCEE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh-----cCeeEEEEeccCccccccccceEE
Confidence            35899999999999999999998754 469999999999999999987652     578999999865321  1235789


Q ss_pred             EEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          373 VLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       373 ~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|+.|.+..+-...++..+....++++.+.++
T Consensus       150 vVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          150 GLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             EEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            99999998775555665554433366666654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.09  E-value=2.4e-10  Score=118.03  Aligned_cols=84  Identities=17%  Similarity=0.159  Sum_probs=69.5

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-CCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-VGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-~~~D~vi  375 (457)
                      .++.+|||+|||+|..++.+|...+..+|+|+|+++.+++.+++|++.++   . +++++++|+.+....+. ..||+|+
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g---~-~~~~~~~D~~~~~~~~~~~~fD~Vl  320 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG---M-KATVKQGDGRYPSQWCGEQQFDRIL  320 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT---C-CCEEEECCTTCTHHHHTTCCEEEEE
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcC---C-CeEEEeCchhhchhhcccCCCCEEE
Confidence            47899999999999999999987544699999999999999999998843   2 47899999987542222 4799999


Q ss_pred             ECCCCCCcc
Q 044572          376 VDPPRKGLD  384 (457)
Q Consensus       376 ~DPPR~Gl~  384 (457)
                      +|||..|..
T Consensus       321 ~D~Pcsg~g  329 (429)
T 1sqg_A          321 LDAPCSATG  329 (429)
T ss_dssp             EECCCCCGG
T ss_pred             EeCCCCccc
Confidence            999987753

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.09  E-value=5.8e-10  Score=107.97  Aligned_cols=117  Identities=15%  Similarity=0.091  Sum_probs=83.5

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .++.+|||+|||+|.+++.+++..+ ..+|+++|+++.+++.|++|++.+  +..++++++.+|+.+.+.  ...||+|+
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~--~~~~D~V~  186 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW--GLIERVTIKVRDISEGFD--EKDVDALF  186 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT--TCGGGEEEECCCGGGCCS--CCSEEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc--CCCCCEEEEECCHHHccc--CCccCEEE
Confidence            3688999999999999999998732 569999999999999999999874  223689999999977532  24699999


Q ss_pred             ECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHH
Q 044572          376 VDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKE  425 (457)
Q Consensus       376 ~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~  425 (457)
                      +|||..   ..+++.+.+...+++.+++.     +........+...+++
T Consensus       187 ~~~~~~---~~~l~~~~~~L~pgG~l~~~-----~~~~~~~~~~~~~l~~  228 (277)
T 1o54_A          187 LDVPDP---WNYIDKCWEALKGGGRFATV-----CPTTNQVQETLKKLQE  228 (277)
T ss_dssp             ECCSCG---GGTHHHHHHHEEEEEEEEEE-----ESSHHHHHHHHHHHHH
T ss_pred             ECCcCH---HHHHHHHHHHcCCCCEEEEE-----eCCHHHHHHHHHHHHH
Confidence            999853   13444444432356666654     3323334445555444

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.09  E-value=7.6e-10  Score=103.00  Aligned_cols=115  Identities=15%  Similarity=0.076  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572          283 RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI  362 (457)
Q Consensus       283 ~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~  362 (457)
                      ...+.+.+.+.+.+.++.+|||+|||+|.++..++....  +|+|+|+++.+++.|++|++.+   . .+++++++|+.+
T Consensus        23 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~---~-~~~~~~~~d~~~   96 (227)
T 1ve3_A           23 SRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR---E-SNVEFIVGDARK   96 (227)
T ss_dssp             HHHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT---T-CCCEEEECCTTS
T ss_pred             HHHHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc---C-CCceEEECchhc
Confidence            445566677777666788999999999999999998643  9999999999999999998873   2 578999999877


Q ss_pred             CcccccCCccEEEECCC--CCCcc--HHHHHHHHhcCCCCcEEEEe
Q 044572          363 EPLSWLVGSDVLVVDPP--RKGLD--SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       363 ~~~~~~~~~D~vi~DPP--R~Gl~--~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ... ..+.||+|+++++  .....  ..+++.+.+.-.+++.+++.
T Consensus        97 ~~~-~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  141 (227)
T 1ve3_A           97 LSF-EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY  141 (227)
T ss_dssp             CCS-CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCC-CCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            431 1257999999988  43322  23455554433355555553

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.08  E-value=6.9e-10  Score=102.44  Aligned_cols=98  Identities=17%  Similarity=0.098  Sum_probs=77.0

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.+++.+++.  ..+|+++|+++.+++.|++|++.+   +..+++++.+|+.+.... ...||+|++
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~-~~~~D~i~~  149 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNL---DLHNVSTRHGDGWQGWQA-RAPFDAIIV  149 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEESCGGGCCGG-GCCEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHc---CCCceEEEECCcccCCcc-CCCccEEEE
Confidence            46899999999999999999987  459999999999999999999874   345899999999875433 368999999


Q ss_pred             CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.....+...+   ...++ +++.++++
T Consensus       150 ~~~~~~~~~~~---~~~L~-pgG~lv~~  173 (210)
T 3lbf_A          150 TAAPPEIPTAL---MTQLD-EGGILVLP  173 (210)
T ss_dssp             SSBCSSCCTHH---HHTEE-EEEEEEEE
T ss_pred             ccchhhhhHHH---HHhcc-cCcEEEEE
Confidence            87655554432   33444 66666665

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.07  E-value=3.4e-10  Score=106.86  Aligned_cols=99  Identities=16%  Similarity=0.089  Sum_probs=76.8

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.+++.+++..+ .+|+++|+++.+++.|++|++.+   +..+++++.+|+...+.. ...||+|++
T Consensus        90 ~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~-~~~fD~Ii~  164 (235)
T 1jg1_A           90 KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERA---GVKNVHVILGDGSKGFPP-KAPYDVIIV  164 (235)
T ss_dssp             CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHT---TCCSEEEEESCGGGCCGG-GCCEEEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHc---CCCCcEEEECCcccCCCC-CCCccEEEE
Confidence            4688999999999999999998754 69999999999999999999873   345799999998433221 235999999


Q ss_pred             CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.+...+..++   ...++ +++.++++
T Consensus       165 ~~~~~~~~~~~---~~~L~-pgG~lvi~  188 (235)
T 1jg1_A          165 TAGAPKIPEPL---IEQLK-IGGKLIIP  188 (235)
T ss_dssp             CSBBSSCCHHH---HHTEE-EEEEEEEE
T ss_pred             CCcHHHHHHHH---HHhcC-CCcEEEEE
Confidence            98876665533   33454 67777776

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.07  E-value=5.6e-10  Score=113.01  Aligned_cols=98  Identities=18%  Similarity=0.108  Sum_probs=76.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      +|++|||+|||+|.+++.+|+ .|+++|+|||.|+ +++.|+++++.|  +..++|+++++|+++..  +.+++|+||.+
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~-aGA~~V~ave~s~-~~~~a~~~~~~n--~~~~~i~~i~~~~~~~~--lpe~~DvivsE  156 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQ-AGARRVYAVEASA-IWQQAREVVRFN--GLEDRVHVLPGPVETVE--LPEQVDAIVSE  156 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH-TTCSEEEEEECST-THHHHHHHHHHT--TCTTTEEEEESCTTTCC--CSSCEEEEECC
T ss_pred             CCCEEEEeCCCccHHHHHHHH-hCCCEEEEEeChH-HHHHHHHHHHHc--CCCceEEEEeeeeeeec--CCccccEEEee
Confidence            689999999999999999887 6789999999996 789999999984  45578999999998753  23689999998


Q ss_pred             CCCC-----CccHHHHHHHHhcCCCCcEE
Q 044572          378 PPRK-----GLDSSLVHALQSIGSAERKA  401 (457)
Q Consensus       378 PPR~-----Gl~~~v~~~l~~~~~~~~iv  401 (457)
                      +--.     ++-+.++.+..++..+++++
T Consensus       157 ~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~  185 (376)
T 4hc4_A          157 WMGYGLLHESMLSSVLHARTKWLKEGGLL  185 (376)
T ss_dssp             CCBTTBTTTCSHHHHHHHHHHHEEEEEEE
T ss_pred             cccccccccchhhhHHHHHHhhCCCCceE
Confidence            7633     34445666665543344443

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.07  E-value=3e-10  Score=105.23  Aligned_cols=114  Identities=11%  Similarity=0.009  Sum_probs=83.5

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572          286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP  364 (457)
Q Consensus       286 ~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~  364 (457)
                      ..++..+.... ++.+|||+|||+|..++.++...+ ..+|++||+++.+++.|++|++..  +..++++++.+|+.+.+
T Consensus        45 ~~~l~~l~~~~-~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~  121 (210)
T 3c3p_A           45 GRLLYLLARIK-QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDN--GLIDRVELQVGDPLGIA  121 (210)
T ss_dssp             HHHHHHHHHHH-CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH--SGGGGEEEEESCHHHHH
T ss_pred             HHHHHHHHHhh-CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC--CCCceEEEEEecHHHHh
Confidence            34445444432 578999999999999999997533 469999999999999999998863  23357999999987654


Q ss_pred             ccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          365 LSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       365 ~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ....+ ||+|++|.+..... .+++.+.++-.+++++++.
T Consensus       122 ~~~~~-fD~v~~~~~~~~~~-~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          122 AGQRD-IDILFMDCDVFNGA-DVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             TTCCS-EEEEEEETTTSCHH-HHHHHHGGGEEEEEEEEEE
T ss_pred             ccCCC-CCEEEEcCChhhhH-HHHHHHHHhcCCCeEEEEE
Confidence            33335 99999998765543 4555555544467777664

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.07  E-value=2.4e-09  Score=99.39  Aligned_cols=104  Identities=15%  Similarity=0.115  Sum_probs=76.4

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCC----CcEEEEEccCCcCcccccCCccE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVD----GNISWHNADNSIEPLSWLVGSDV  373 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~----~nv~~~~~d~~~~~~~~~~~~D~  373 (457)
                      ++.+|||+|||+|.++..+++..+..+|+|||+|+.+++.|++|++.++  ..    .+++++++|+..... ..+.||+
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~v~~~~~d~~~~~~-~~~~fD~  105 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLR--LPRNQWERLQLIQGALTYQDK-RFHGYDA  105 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCC--CCHHHHTTEEEEECCTTSCCG-GGCSCSE
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhc--CCcccCcceEEEeCCcccccc-cCCCcCE
Confidence            5789999999999999999986545699999999999999999987632  22    279999999864322 2367999


Q ss_pred             EEECCCCCCcc----HHHHHHHHhcCCCCcEEEEe
Q 044572          374 LVVDPPRKGLD----SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       374 vi~DPPR~Gl~----~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |++.-.-.-+.    ..+++.+.+...++++++++
T Consensus       106 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~  140 (217)
T 3jwh_A          106 ATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT  140 (217)
T ss_dssp             EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred             EeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEc
Confidence            99755422122    24566666655567766654

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.07  E-value=1e-09  Score=107.09  Aligned_cols=105  Identities=16%  Similarity=0.134  Sum_probs=79.2

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEcc
Q 044572          280 ANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD  359 (457)
Q Consensus       280 ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d  359 (457)
                      .+....+.+++.+.  +.++.+|||+|||+|.++..++...  .+|+|||+|+.+++.|+++++.+  +..++++++++|
T Consensus        12 ~d~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~--~~~~~v~~~~~D   85 (285)
T 1zq9_A           12 KNPLIINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGT--PVASKLQVLVGD   85 (285)
T ss_dssp             CCHHHHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTS--TTGGGEEEEESC
T ss_pred             CCHHHHHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhc--CCCCceEEEEcc
Confidence            34555554444321  2367899999999999999999874  49999999999999999998753  223589999999


Q ss_pred             CCcCcccccCCccEEEECCCCCCccHHHHHHHHh
Q 044572          360 NSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQS  393 (457)
Q Consensus       360 ~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~  393 (457)
                      +.+..   ...||+|+.|+|+...++.+.+.+..
T Consensus        86 ~~~~~---~~~fD~vv~nlpy~~~~~~~~~~l~~  116 (285)
T 1zq9_A           86 VLKTD---LPFFDTCVANLPYQISSPFVFKLLLH  116 (285)
T ss_dssp             TTTSC---CCCCSEEEEECCGGGHHHHHHHHHHC
T ss_pred             eeccc---chhhcEEEEecCcccchHHHHHHHhc
Confidence            98653   23799999999998776655555543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.06  E-value=5.2e-10  Score=109.00  Aligned_cols=105  Identities=13%  Similarity=0.071  Sum_probs=80.1

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC--------CCCcEEEEEccCCcCccccc
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS--------VDGNISWHNADNSIEPLSWL  368 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~--------~~~nv~~~~~d~~~~~~~~~  368 (457)
                      ..+.+|||+|||+|.++..+++. +..+|++||+++.+++.|++|+ ....+        ...+++++.+|+.+.+.. .
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~  150 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-N  150 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-C
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-c
Confidence            46789999999999999999986 6779999999999999999998 32101        236899999998765443 4


Q ss_pred             CCccEEEECCCCC-----Cc-cHHHHHHHHhcCCCCcEEEEe
Q 044572          369 VGSDVLVVDPPRK-----GL-DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       369 ~~~D~vi~DPPR~-----Gl-~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.||+|++|+|..     .+ ..++++.+.+.-.+++++.+.
T Consensus       151 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  192 (281)
T 1mjf_A          151 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  192 (281)
T ss_dssp             CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            6799999999842     22 355666666554467777665

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.06  E-value=2.7e-10  Score=109.78  Aligned_cols=130  Identities=9%  Similarity=-0.051  Sum_probs=81.2

Q ss_pred             CCCCCCCHHHH-HHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCC
Q 044572          275 SSFGQANTRAF-DILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDG  351 (457)
Q Consensus       275 ~~FfQ~n~~~~-~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~  351 (457)
                      ..|+|.+.... ...++.+.+.+  .++.+|||+|||+|.+++.+|+.+  .+|+|||+|+.|++.|++|++.+    .-
T Consensus        19 ~~f~~~~~~~~~~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g--~~V~gvD~S~~ml~~Ar~~~~~~----~v   92 (261)
T 3iv6_A           19 NQFWTIGRVAARPSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERG--ASVTVFDFSQRMCDDLAEALADR----CV   92 (261)
T ss_dssp             THHHHTSCGGGSCCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTSSS----CC
T ss_pred             HHHHHHhhccccHHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhc----cc
Confidence            34555443221 22334444443  368899999999999999999863  49999999999999999997651    11


Q ss_pred             cEEEEEccCCcCcccccCCccEEEECCCCCCcc----HHHHHHHHhcCCCCcEEEEeccCCCCCchhchh
Q 044572          352 NISWHNADNSIEPLSWLVGSDVLVVDPPRKGLD----SSLVHALQSIGSAERKAKSLSESSSSMVKEEKR  417 (457)
Q Consensus       352 nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~----~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~  417 (457)
                      +..+...+.. ......+.||+|+++..-.-+.    ..++..+..+. +++.+++|     |......+
T Consensus        93 ~~~~~~~~~~-~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS-----~~~g~~~~  155 (261)
T 3iv6_A           93 TIDLLDITAE-IPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS-----VKLGFYDI  155 (261)
T ss_dssp             EEEECCTTSC-CCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE-----EEBSCCHH
T ss_pred             eeeeeecccc-cccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE-----eccCcccc
Confidence            2233222220 0112235799999987522111    23555565665 88888898     66544433

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.06  E-value=5.8e-10  Score=106.40  Aligned_cols=98  Identities=13%  Similarity=0.092  Sum_probs=72.5

Q ss_pred             HHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572          287 ILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP  364 (457)
Q Consensus       287 ~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~  364 (457)
                      .+++.+.+.+.  ++.+|||+|||+|.++..++...  .+|+|||+|+.+++.|++|++.     ..+++++++|+.+..
T Consensus        17 ~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~~   89 (244)
T 1qam_A           17 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQFK   89 (244)
T ss_dssp             HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGGCC
T ss_pred             HHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhcc-----CCCeEEEEChHHhCC
Confidence            34455555543  67899999999999999999874  5999999999999999998754     257999999998753


Q ss_pred             ccccCCccEEEECCCCCCccHHHHHHHHh
Q 044572          365 LSWLVGSDVLVVDPPRKGLDSSLVHALQS  393 (457)
Q Consensus       365 ~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~  393 (457)
                      ......| .||.|||+.-..+ ++..+..
T Consensus        90 ~~~~~~~-~vv~nlPy~~~~~-~l~~~l~  116 (244)
T 1qam_A           90 FPKNQSY-KIFGNIPYNISTD-IIRKIVF  116 (244)
T ss_dssp             CCSSCCC-EEEEECCGGGHHH-HHHHHHH
T ss_pred             cccCCCe-EEEEeCCcccCHH-HHHHHHh
Confidence            2211234 7999999864443 4444443

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.06  E-value=1e-09  Score=104.36  Aligned_cols=102  Identities=18%  Similarity=0.097  Sum_probs=76.4

Q ss_pred             CCCCeEEEEcccccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAA-RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~-~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .++.+|||+|||+|.+++.++.. ....+|+++|+++.+++.|++|++.+.  +.++++++.+|+.+.... ...||+|+
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~--g~~~v~~~~~d~~~~~~~-~~~~D~v~  171 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFW--QVENVRFHLGKLEEAELE-EAAYDGVA  171 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC--CCCCEEEEESCGGGCCCC-TTCEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhc--CCCCEEEEECchhhcCCC-CCCcCEEE
Confidence            47889999999999999999986 224699999999999999999988730  246899999999775111 25799999


Q ss_pred             ECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          376 VDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|+|...   .+++.+.+...+++.+++.
T Consensus       172 ~~~~~~~---~~l~~~~~~L~~gG~l~~~  197 (258)
T 2pwy_A          172 LDLMEPW---KVLEKAALALKPDRFLVAY  197 (258)
T ss_dssp             EESSCGG---GGHHHHHHHEEEEEEEEEE
T ss_pred             ECCcCHH---HHHHHHHHhCCCCCEEEEE
Confidence            9998532   3445444433355555554

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.06  E-value=1.9e-09  Score=101.92  Aligned_cols=100  Identities=14%  Similarity=0.079  Sum_probs=76.4

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.+++.+++.  ..+|+++|+++++++.|++|++.+  +...+++++.+|+.+.... ...||+|++
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~-~~~~D~v~~  164 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKF--NLGKNVKFFNVDFKDAEVP-EGIFHAAFV  164 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHT--TCCTTEEEECSCTTTSCCC-TTCBSEEEE
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHc--CCCCcEEEEEcChhhcccC-CCcccEEEE
Confidence            36889999999999999999987  469999999999999999999874  2336899999999875411 247999999


Q ss_pred             CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+|..   ..+++.+.++-.+++.+++.
T Consensus       165 ~~~~~---~~~l~~~~~~L~~gG~l~~~  189 (248)
T 2yvl_A          165 DVREP---WHYLEKVHKSLMEGAPVGFL  189 (248)
T ss_dssp             CSSCG---GGGHHHHHHHBCTTCEEEEE
T ss_pred             CCcCH---HHHHHHHHHHcCCCCEEEEE
Confidence            99832   13445444433356666665

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.06  E-value=6.9e-10  Score=107.56  Aligned_cols=102  Identities=17%  Similarity=0.173  Sum_probs=77.8

Q ss_pred             CHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572          281 NTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN  360 (457)
Q Consensus       281 n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~  360 (457)
                      +....+.+++.+.  +.++ +|||+|||+|.++..++...  .+|+|||+|+++++.+++|+..      .|++++++|+
T Consensus        32 d~~i~~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~------~~v~vi~~D~  100 (271)
T 3fut_A           32 SEAHLRRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSG------LPVRLVFQDA  100 (271)
T ss_dssp             CHHHHHHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTT------SSEEEEESCG
T ss_pred             CHHHHHHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCC------CCEEEEECCh
Confidence            4555555555432  2357 99999999999999999863  5899999999999999998652      4799999999


Q ss_pred             CcCcccccCCccEEEECCCCCCccHHHHHHHHh
Q 044572          361 SIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQS  393 (457)
Q Consensus       361 ~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~  393 (457)
                      .+........+|.||.|+|+.-..+-+.+.+..
T Consensus       101 l~~~~~~~~~~~~iv~NlPy~iss~il~~ll~~  133 (271)
T 3fut_A          101 LLYPWEEVPQGSLLVANLPYHIATPLVTRLLKT  133 (271)
T ss_dssp             GGSCGGGSCTTEEEEEEECSSCCHHHHHHHHHH
T ss_pred             hhCChhhccCccEEEecCcccccHHHHHHHhcC
Confidence            876433223689999999997766655555544

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.06  E-value=4.6e-10  Score=107.88  Aligned_cols=103  Identities=15%  Similarity=0.138  Sum_probs=75.8

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEcc
Q 044572          280 ANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD  359 (457)
Q Consensus       280 ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d  359 (457)
                      .+....+.+++.+.  +.++.+|||+|||+|.++..++...  .+|+|||+|+++++.++++++.     ..+++++++|
T Consensus        13 ~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~-----~~~v~~i~~D   83 (255)
T 3tqs_A           13 HDSFVLQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQ-----QKNITIYQND   83 (255)
T ss_dssp             CCHHHHHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTT-----CTTEEEEESC
T ss_pred             cCHHHHHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhh-----CCCcEEEEcc
Confidence            34555555555432  2368899999999999999999763  6999999999999999999864     2589999999


Q ss_pred             CCcCccc-c--cCCccEEEECCCCCCccHHHHHHHH
Q 044572          360 NSIEPLS-W--LVGSDVLVVDPPRKGLDSSLVHALQ  392 (457)
Q Consensus       360 ~~~~~~~-~--~~~~D~vi~DPPR~Gl~~~v~~~l~  392 (457)
                      +.+.... .  ...|| ||.|||+.--.+-+.+.+.
T Consensus        84 ~~~~~~~~~~~~~~~~-vv~NlPY~is~~il~~ll~  118 (255)
T 3tqs_A           84 ALQFDFSSVKTDKPLR-VVGNLPYNISTPLLFHLFS  118 (255)
T ss_dssp             TTTCCGGGSCCSSCEE-EEEECCHHHHHHHHHHHHH
T ss_pred             hHhCCHHHhccCCCeE-EEecCCcccCHHHHHHHHh
Confidence            9886432 1  13567 9999998544443444443

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.05  E-value=2.5e-10  Score=112.35  Aligned_cols=90  Identities=10%  Similarity=0.113  Sum_probs=70.3

Q ss_pred             HHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc
Q 044572          288 LLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL  365 (457)
Q Consensus       288 l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~  365 (457)
                      |++.+.+++  .++.+|||+|||+|.+++.++...+..+|+|||+|++|++.|++|++.+   + .+++++++|+.+...
T Consensus        14 Ll~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~---g-~~v~~v~~d~~~l~~   89 (301)
T 1m6y_A           14 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF---S-DRVSLFKVSYREADF   89 (301)
T ss_dssp             THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG---T-TTEEEEECCGGGHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc---C-CcEEEEECCHHHHHH
Confidence            334444443  3688999999999999999998753469999999999999999999873   2 589999999866421


Q ss_pred             ccc----CCccEEEECCCCC
Q 044572          366 SWL----VGSDVLVVDPPRK  381 (457)
Q Consensus       366 ~~~----~~~D~vi~DPPR~  381 (457)
                      .+.    ..||.|++|||.+
T Consensus        90 ~l~~~g~~~~D~Vl~D~gvS  109 (301)
T 1m6y_A           90 LLKTLGIEKVDGILMDLGVS  109 (301)
T ss_dssp             HHHHTTCSCEEEEEEECSCC
T ss_pred             HHHhcCCCCCCEEEEcCccc
Confidence            111    4799999999864

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.05  E-value=4.4e-10  Score=107.61  Aligned_cols=120  Identities=18%  Similarity=0.067  Sum_probs=84.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc--ccCCccEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS--WLVGSDVLV  375 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~--~~~~~D~vi  375 (457)
                      ++.+|||+|||+|.+++.+|...+..+|++||+++.+++.|++|++.+   +..|++++++|+++....  ..+.||+|+
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~l~~v~~~~~d~~~~~~~~~~~~~fD~I~  156 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVL---GLKGARALWGRAEVLAREAGHREAYARAV  156 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH---TCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh---CCCceEEEECcHHHhhcccccCCCceEEE
Confidence            578999999999999999998755679999999999999999999874   335799999999775431  235799999


Q ss_pred             ECCCCCCccHHHHHHHHhc-CCCCcEEEEeccCCCC-CchhchhhHHHHHHHhc
Q 044572          376 VDPPRKGLDSSLVHALQSI-GSAERKAKSLSESSSS-MVKEEKRPWILRAKEAS  427 (457)
Q Consensus       376 ~DPPR~Gl~~~v~~~l~~~-~~~~~ivyvs~~~~~c-~~~~~~~~~~~~~~~~~  427 (457)
                      .+-- ..+ ..+++.+..+ ++.+.++++.     + ........+...+...+
T Consensus       157 s~a~-~~~-~~ll~~~~~~LkpgG~l~~~~-----g~~~~~e~~~~~~~l~~~G  203 (249)
T 3g89_A          157 ARAV-APL-CVLSELLLPFLEVGGAAVAMK-----GPRVEEELAPLPPALERLG  203 (249)
T ss_dssp             EESS-CCH-HHHHHHHGGGEEEEEEEEEEE-----CSCCHHHHTTHHHHHHHHT
T ss_pred             ECCc-CCH-HHHHHHHHHHcCCCeEEEEEe-----CCCcHHHHHHHHHHHHHcC
Confidence            8421 112 3455555443 4344455554     2 23445555665555544

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.04  E-value=1.1e-09  Score=111.23  Aligned_cols=115  Identities=17%  Similarity=0.092  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572          284 AFDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS  361 (457)
Q Consensus       284 ~~~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~  361 (457)
                      .++.+.+.+....  .++.+|||+|||+|.+++.+|+. ++++|+|||+| .+++.|+++++.+  +..++++++++|+.
T Consensus        47 r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~--~~~~~v~~~~~d~~  122 (376)
T 3r0q_C           47 RMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKAN--NLDHIVEVIEGSVE  122 (376)
T ss_dssp             HHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHT--TCTTTEEEEESCGG
T ss_pred             HHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHc--CCCCeEEEEECchh
Confidence            3444455554433  36889999999999999999985 66799999999 9999999999884  34467999999998


Q ss_pred             cCcccccCCccEEEECCC-CC----CccHHHHHHHHhcCCCCcEEEEe
Q 044572          362 IEPLSWLVGSDVLVVDPP-RK----GLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       362 ~~~~~~~~~~D~vi~DPP-R~----Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +....  +.||+|+.++. ..    .....+++.+.++..++++++.+
T Consensus       123 ~~~~~--~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          123 DISLP--EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             GCCCS--SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             hcCcC--CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence            76432  68999999984 22    22334666664443467776654

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.04  E-value=5.7e-10  Score=109.41  Aligned_cols=103  Identities=16%  Similarity=0.135  Sum_probs=76.9

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEcc
Q 044572          280 ANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD  359 (457)
Q Consensus       280 ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d  359 (457)
                      .+....+.+++.+.  +.++++|||+|||+|.++..++..  +.+|+|||+|+++++.++++++.     ..|++++++|
T Consensus        34 ~d~~i~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~-----~~~v~vi~gD  104 (295)
T 3gru_A           34 IDKNFVNKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKEL-----YNNIEIIWGD  104 (295)
T ss_dssp             CCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHH-----CSSEEEEESC
T ss_pred             CCHHHHHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhcc-----CCCeEEEECc
Confidence            34545444444321  236889999999999999999987  46999999999999999999874     2579999999


Q ss_pred             CCcCcccccCCccEEEECCCCCCccHHHHHHHH
Q 044572          360 NSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQ  392 (457)
Q Consensus       360 ~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~  392 (457)
                      +.+.... ...||+||.|+|+.-..+-+.+.+.
T Consensus       105 ~l~~~~~-~~~fD~Iv~NlPy~is~pil~~lL~  136 (295)
T 3gru_A          105 ALKVDLN-KLDFNKVVANLPYQISSPITFKLIK  136 (295)
T ss_dssp             TTTSCGG-GSCCSEEEEECCGGGHHHHHHHHHH
T ss_pred             hhhCCcc-cCCccEEEEeCcccccHHHHHHHHh
Confidence            9875322 2369999999998655544444443

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.04  E-value=9.4e-10  Score=104.32  Aligned_cols=123  Identities=12%  Similarity=0.027  Sum_probs=88.4

Q ss_pred             CCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEE
Q 044572          277 FGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISW  355 (457)
Q Consensus       277 FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~  355 (457)
                      +.+...... .++..+.... ++.+|||+|||+|..++.+|+..+ ..+|++||+++++++.|++|++..  +..+++++
T Consensus        51 ~~~~~~~~~-~~l~~l~~~~-~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--g~~~~i~~  126 (237)
T 3c3y_A           51 YMSTSPLAG-QLMSFVLKLV-NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA--GVEHKINF  126 (237)
T ss_dssp             GGSCCHHHH-HHHHHHHHHT-TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT--TCGGGEEE
T ss_pred             CCCcCHHHH-HHHHHHHHhh-CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEE
Confidence            455555554 4445444443 578999999999999999998633 469999999999999999999874  33457999


Q ss_pred             EEccCCcCcccc------cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          356 HNADNSIEPLSW------LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       356 ~~~d~~~~~~~~------~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.+|+.+.+..+      .+.||+|++|.+.... ...++.+..+-.+++++.+.
T Consensus       127 ~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~~~-~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          127 IESDAMLALDNLLQGQESEGSYDFGFVDADKPNY-IKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             EESCHHHHHHHHHHSTTCTTCEEEEEECSCGGGH-HHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcCHHHHHHHHHhccCCCCCcCEEEECCchHHH-HHHHHHHHHhcCCCeEEEEe
Confidence            999998754433      3579999999875443 34555554443466666664

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.03  E-value=3.9e-10  Score=106.84  Aligned_cols=102  Identities=16%  Similarity=0.042  Sum_probs=75.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc--ccCCccEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS--WLVGSDVLV  375 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~--~~~~~D~vi  375 (457)
                      ++.+|||+|||+|.+++.+|......+|+|||+|+++++.|++|++.+   +..|++++++|+.+....  ..+.||+|+
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~fD~V~  146 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL---QLENTTFCHDRAETFGQRKDVRESYDIVT  146 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH---TCSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCCEEEEeccHHHhcccccccCCccEEE
Confidence            578999999999999999996444568999999999999999999874   235799999998764321  135799999


Q ss_pred             ECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          376 VDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++.- .. ...+++.+..+-.+++.+++.
T Consensus       147 ~~~~-~~-~~~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          147 ARAV-AR-LSVLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             EECC-SC-HHHHHHHHGGGEEEEEEEEEE
T ss_pred             Eecc-CC-HHHHHHHHHHhcCCCCEEEEE
Confidence            8763 22 234666664443456665554

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.03  E-value=1.2e-09  Score=101.11  Aligned_cols=115  Identities=13%  Similarity=0.045  Sum_probs=82.0

Q ss_pred             CHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEc
Q 044572          281 NTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA  358 (457)
Q Consensus       281 n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~  358 (457)
                      +....+.+...+...+.  ++.+|||+|||+|.++..++...  .+|+|||+++.+++.|++++...     .+++++++
T Consensus        32 ~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~  104 (216)
T 3ofk_A           32 NPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRW-----SHISWAAT  104 (216)
T ss_dssp             CHHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTC-----SSEEEEEC
T ss_pred             CHhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccC-----CCeEEEEc
Confidence            44444444444444433  56799999999999999999863  49999999999999999997652     37999999


Q ss_pred             cCCcCcccccCCccEEEECCCCCCcc-----HHHHHHHHhcCCCCcEEEEe
Q 044572          359 DNSIEPLSWLVGSDVLVVDPPRKGLD-----SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       359 d~~~~~~~~~~~~D~vi~DPPR~Gl~-----~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+.+..  ..+.||+|++...-.-+.     ..+++.+.++-.+++.++++
T Consensus       105 d~~~~~--~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  153 (216)
T 3ofk_A          105 DILQFS--TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFG  153 (216)
T ss_dssp             CTTTCC--CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             chhhCC--CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            998765  246899999974422111     13455555544477777775

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.03  E-value=9.5e-10  Score=110.10  Aligned_cols=130  Identities=16%  Similarity=0.226  Sum_probs=93.1

Q ss_pred             eeEEEEECCCCCCCCCHHH-HHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          266 GGIDISLAPSSFGQANTRA-FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       266 ~g~~~~i~~~~FfQ~n~~~-~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      .+..+...++.|.+.+... ++.+++.+..  ..+.+|||+|||+|.+++.+++.....+|++||+|+.+++.|++|++.
T Consensus       165 ~~~~~~~~~gvf~~~~~d~~~~~ll~~l~~--~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~  242 (343)
T 2pjd_A          165 DGLTVKTLPGVFSRDGLDVGSQLLLSTLTP--HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAA  242 (343)
T ss_dssp             TTEEEEECTTCTTSSSCCHHHHHHHHHSCT--TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHH
T ss_pred             cceEEEecCCccCCCCCcHHHHHHHHhcCc--CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            5678888899999877543 3334333211  246799999999999999999865335899999999999999999987


Q ss_pred             CCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCC-Ccc------HHHHHHHHhcCCCCcEEEEe
Q 044572          345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK-GLD------SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       345 ~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~-Gl~------~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++  .  +++++.+|+.+..   .+.||+|+++||.. |..      ..+++.+.+.-.+++.+++.
T Consensus       243 ~~--~--~~~~~~~d~~~~~---~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~  302 (343)
T 2pjd_A          243 NG--V--EGEVFASNVFSEV---KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (343)
T ss_dssp             TT--C--CCEEEECSTTTTC---CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hC--C--CCEEEEccccccc---cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            42  1  3578899987643   35799999999964 331      23444444433466666665

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.02  E-value=7.7e-10  Score=109.93  Aligned_cols=108  Identities=15%  Similarity=0.087  Sum_probs=80.3

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCC-CCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV-DGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~-~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      ..+.+|||+|||+|.+++.+++..+..+|++||+|+++++.|++|+....++. ..+++++.+|+.+.+....+.||+||
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            45789999999999999999976456799999999999999999976521111 36899999998775433346799999


Q ss_pred             ECCCCC-C----c-cHHHHHHHHhcCCCCcEEEEe
Q 044572          376 VDPPRK-G----L-DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~-G----l-~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|++-. +    + ..++++.+.+.-.+++++.+.
T Consensus       195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  229 (321)
T 2pt6_A          195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ  229 (321)
T ss_dssp             EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            999521 1    1 256677666554467776664

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.02  E-value=2e-09  Score=102.21  Aligned_cols=103  Identities=13%  Similarity=0.021  Sum_probs=76.7

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.+++.+|...+ .+|+|||+++.+++.|+++++..  +..+|++++++|+.+...  .+.||+|++
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~l~~a~~~~~~~--~~~~~v~~~~~d~~~~~~--~~~fD~V~~  109 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEEL--GVSERVHFIHNDAAGYVA--NEKCDVAAC  109 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEESCCTTCCC--SSCEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEECChHhCCc--CCCCCEEEE
Confidence            4788999999999999999998653 48999999999999999999874  334589999999987643  467999997


Q ss_pred             CCCC--CCccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPR--KGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR--~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .-.-  ..-...+++.+.+.-.+++.++++
T Consensus       110 ~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~  139 (256)
T 1nkv_A          110 VGATWIAGGFAGAEELLAQSLKPGGIMLIG  139 (256)
T ss_dssp             ESCGGGTSSSHHHHHHHTTSEEEEEEEEEE
T ss_pred             CCChHhcCCHHHHHHHHHHHcCCCeEEEEe
Confidence            3221  001234566665544466666664

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.02  E-value=1.5e-09  Score=101.21  Aligned_cols=102  Identities=17%  Similarity=-0.004  Sum_probs=72.6

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccccCCccEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDVL  374 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D~v  374 (457)
                      .++.+|||+|||+|.++..+|...+..+|+|||+|+.|++.+.++++..     .|+.++.+|+....  ....+.||+|
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~~~fD~V  130 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIVEKVDLI  130 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-----CCeEEEEcCCCCchhhcccccceeEE
Confidence            4688999999999999999998754459999999999998888777652     47899999987631  1123679999


Q ss_pred             EECCCCCCccHHHHHHHHh-cCCCCcEEEEe
Q 044572          375 VVDPPRKGLDSSLVHALQS-IGSAERKAKSL  404 (457)
Q Consensus       375 i~DPPR~Gl~~~v~~~l~~-~~~~~~ivyvs  404 (457)
                      ++|-+.......+++.+.+ ++ +++.++++
T Consensus       131 ~~~~~~~~~~~~~l~~~~r~Lk-pgG~l~i~  160 (210)
T 1nt2_A          131 YQDIAQKNQIEILKANAEFFLK-EKGEVVIM  160 (210)
T ss_dssp             EECCCSTTHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             EEeccChhHHHHHHHHHHHHhC-CCCEEEEE
Confidence            9996433211222444444 54 55555554

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.02  E-value=1.4e-09  Score=105.13  Aligned_cols=119  Identities=18%  Similarity=0.060  Sum_probs=83.8

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhC-CCCCCCcEEEEEccCCcCcccccCCccEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRL-PKSVDGNISWHNADNSIEPLSWLVGSDVL  374 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~-~~~~~~nv~~~~~d~~~~~~~~~~~~D~v  374 (457)
                      .++.+|||+|||+|.+++.++... ...+|+++|+++++++.|++|++.+ + ...++++++.+|+.+.... ...||+|
T Consensus        98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g-~~~~~v~~~~~d~~~~~~~-~~~~D~v  175 (280)
T 1i9g_A           98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG-QPPDNWRLVVSDLADSELP-DGSVDRA  175 (280)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT-SCCTTEEEECSCGGGCCCC-TTCEEEE
T ss_pred             CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCCcEEEEECchHhcCCC-CCceeEE
Confidence            468899999999999999999852 2469999999999999999998763 1 1246899999999775321 3579999


Q ss_pred             EECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHH
Q 044572          375 VVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKE  425 (457)
Q Consensus       375 i~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~  425 (457)
                      ++|+|..   ..+++.+.+...+++.++++     +........+...++.
T Consensus       176 ~~~~~~~---~~~l~~~~~~L~pgG~l~~~-----~~~~~~~~~~~~~l~~  218 (280)
T 1i9g_A          176 VLDMLAP---WEVLDAVSRLLVAGGVLMVY-----VATVTQLSRIVEALRA  218 (280)
T ss_dssp             EEESSCG---GGGHHHHHHHEEEEEEEEEE-----ESSHHHHHHHHHHHHH
T ss_pred             EECCcCH---HHHHHHHHHhCCCCCEEEEE-----eCCHHHHHHHHHHHHh
Confidence            9999832   13555555433356666665     3333344455554443

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.02  E-value=1.9e-09  Score=100.73  Aligned_cols=119  Identities=16%  Similarity=0.060  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-----CCEEEEEeCCHHHHHHHHHHHhhCCC--CCCCcEE
Q 044572          282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-----CRSVKCVEINKESQLSFEKTVSRLPK--SVDGNIS  354 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-----~~~V~gVE~~~~av~~A~~Na~~~~~--~~~~nv~  354 (457)
                      +.....+++.+...+.++.+|||+|||+|.+++.++...+     ..+|++||+++++++.|++|++.++.  ....+++
T Consensus        64 p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~  143 (227)
T 2pbf_A           64 PHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFK  143 (227)
T ss_dssp             HHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEE
T ss_pred             hHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEE
Confidence            4455556665543455789999999999999999998642     24999999999999999999876320  0036899


Q ss_pred             EEEccCCcCcc---cccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          355 WHNADNSIEPL---SWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       355 ~~~~d~~~~~~---~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++.+|+.+...   .....||+|+++.+...+...+.   ..++ +++.++++
T Consensus       144 ~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~~~~~~---~~Lk-pgG~lv~~  192 (227)
T 2pbf_A          144 IIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILV---DLLA-ENGKLIIP  192 (227)
T ss_dssp             EEECCGGGCCHHHHHHHCCEEEEEECSBBSSCCHHHH---HHEE-EEEEEEEE
T ss_pred             EEECChHhcccccCccCCCcCEEEECCchHHHHHHHH---HhcC-CCcEEEEE
Confidence            99999987531   11367999999998765543332   2344 66666665

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.01  E-value=2.2e-09  Score=101.81  Aligned_cols=108  Identities=11%  Similarity=0.040  Sum_probs=77.1

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhC---CCCCCCcEEEEEccCCcCcccc--cCCc
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL---PKSVDGNISWHNADNSIEPLSW--LVGS  371 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~---~~~~~~nv~~~~~d~~~~~~~~--~~~~  371 (457)
                      .++.+|||+|||+|.+++.+|.......|+|||+++.+++.|++|++.+   ..+...|++++++|+.+.+...  .+.+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            3567899999999999999998655568999999999999999987531   0123468999999998744321  3579


Q ss_pred             cEEEECCC---C-------CCccHHHHHHHHhcCCCCcEEEEe
Q 044572          372 DVLVVDPP---R-------KGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       372 D~vi~DPP---R-------~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |.|++.-|   .       .-....+++.+...-.+++.+++.
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence            98877533   1       112245676666654477777775

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.00  E-value=4.8e-09  Score=99.62  Aligned_cols=104  Identities=11%  Similarity=0.046  Sum_probs=78.7

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.+++.++...+ .+|+|||+|+.+++.|++|++.+  +..++++++++|+.+.... .+.||+|++
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~-~~~fD~v~~  120 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKA--NCADRVKGITGSMDNLPFQ-NEELDLIWS  120 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEECCTTSCSSC-TTCEEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHc--CCCCceEEEECChhhCCCC-CCCEEEEEe
Confidence            3678999999999999999998754 49999999999999999999874  3345699999999765321 367999998


Q ss_pred             CCCCCCcc-HHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKGLD-SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~Gl~-~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +-.-.-++ ..+++.+.+.-.+++.++++
T Consensus       121 ~~~l~~~~~~~~l~~~~~~L~pgG~l~~~  149 (257)
T 3f4k_A          121 EGAIYNIGFERGMNEWSKYLKKGGFIAVS  149 (257)
T ss_dssp             ESCSCCCCHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cChHhhcCHHHHHHHHHHHcCCCcEEEEE
Confidence            76533222 34666666544467777665

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.99  E-value=6.5e-09  Score=101.57  Aligned_cols=101  Identities=16%  Similarity=0.126  Sum_probs=73.0

Q ss_pred             CCCCCeEEEEcccccHHH-HHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEE
Q 044572          296 VPYGASVTDLYAGAGVIG-LSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVL  374 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~s-l~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~v  374 (457)
                      +.++++|||+|||+|.++ +.+|+.. ..+|+|||+|+++++.|++|++..  +. ++++|+++|+.+..   ...||+|
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~-ga~V~gIDis~~~l~~Ar~~~~~~--gl-~~v~~v~gDa~~l~---d~~FDvV  192 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVY-GMRVNVVEIEPDIAELSRKVIEGL--GV-DGVNVITGDETVID---GLEFDVL  192 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTT-CCEEEEEESSHHHHHHHHHHHHHH--TC-CSEEEEESCGGGGG---GCCCSEE
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHhc--CC-CCeEEEECchhhCC---CCCcCEE
Confidence            357999999999999765 5566533 358999999999999999999874  23 78999999998753   3689999


Q ss_pred             EECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          375 VVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       375 i~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +++=-- .-..++++.+.+.-.+++.+.+.
T Consensus       193 ~~~a~~-~d~~~~l~el~r~LkPGG~Lvv~  221 (298)
T 3fpf_A          193 MVAALA-EPKRRVFRNIHRYVDTETRIIYR  221 (298)
T ss_dssp             EECTTC-SCHHHHHHHHHHHCCTTCEEEEE
T ss_pred             EECCCc-cCHHHHHHHHHHHcCCCcEEEEE
Confidence            986321 11225666665543355555443

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.99  E-value=1.7e-09  Score=103.56  Aligned_cols=114  Identities=14%  Similarity=0.151  Sum_probs=78.4

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEcc
Q 044572          280 ANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD  359 (457)
Q Consensus       280 ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d  359 (457)
                      .+....+.+++.+.  ..++.+|||+|||+|.++..++.. ++.+|+|||+|+.+++.+++| .      ..|++++++|
T Consensus        15 ~d~~i~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~-~------~~~v~~i~~D   84 (249)
T 3ftd_A           15 VSEGVLKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI-G------DERLEVINED   84 (249)
T ss_dssp             ECHHHHHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS-C------CTTEEEECSC
T ss_pred             CCHHHHHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc-c------CCCeEEEEcc
Confidence            34444444444321  136889999999999999999975 457999999999999999876 2      2479999999


Q ss_pred             CCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          360 NSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       360 ~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      +.+..........+|+.|||+.-.++-+.+.+.........+.+
T Consensus        85 ~~~~~~~~~~~~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m  128 (249)
T 3ftd_A           85 ASKFPFCSLGKELKVVGNLPYNVASLIIENTVYNKDCVPLAVFM  128 (249)
T ss_dssp             TTTCCGGGSCSSEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEE
T ss_pred             hhhCChhHccCCcEEEEECchhccHHHHHHHHhcCCCCceEEEE
Confidence            98764322112348999999976555455555433223444444

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.99  E-value=9.4e-10  Score=100.41  Aligned_cols=87  Identities=9%  Similarity=0.093  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572          284 AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE  363 (457)
Q Consensus       284 ~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~  363 (457)
                      ..+.+|..+.+++.+..+|||+|||+|.+++.++......+|+|+|+|+.|++.|++|+..++  ...++++  .|....
T Consensus        35 ~ld~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g--~~~~v~~--~d~~~~  110 (200)
T 3fzg_A           35 TLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLK--TTIKYRF--LNKESD  110 (200)
T ss_dssp             GHHHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSC--CSSEEEE--ECCHHH
T ss_pred             hHHHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC--CCccEEE--eccccc
Confidence            456778888888887889999999999999999765444599999999999999999999843  2236776  555332


Q ss_pred             cccccCCccEEEE
Q 044572          364 PLSWLVGSDVLVV  376 (457)
Q Consensus       364 ~~~~~~~~D~vi~  376 (457)
                      .  ....||+|++
T Consensus       111 ~--~~~~~DvVLa  121 (200)
T 3fzg_A          111 V--YKGTYDVVFL  121 (200)
T ss_dssp             H--TTSEEEEEEE
T ss_pred             C--CCCCcChhhH
Confidence            1  2356898876

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.99  E-value=1.8e-09  Score=102.17  Aligned_cols=121  Identities=11%  Similarity=0.021  Sum_probs=85.1

Q ss_pred             CCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044572          279 QANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN  357 (457)
Q Consensus       279 Q~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~  357 (457)
                      +.++...+.+... ... .++.+|||+|||+|.+++.+|+..+ ..+|++||+++.+++.|++|++.++  ..++++++.
T Consensus        43 ~~~~~~~~~l~~l-~~~-~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~v~~~~  118 (239)
T 2hnk_A           43 QISPEEGQFLNIL-TKI-SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG--LENKIFLKL  118 (239)
T ss_dssp             SCCHHHHHHHHHH-HHH-HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEE
T ss_pred             ccCHHHHHHHHHH-HHh-hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCEEEEE
Confidence            3455555554443 332 3678999999999999999998743 4699999999999999999998742  234599999


Q ss_pred             ccCCcCcccc---------------c-CCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          358 ADNSIEPLSW---------------L-VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       358 ~d~~~~~~~~---------------~-~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|+.+.+...               . +.||+|++|....... ..++.+.++-.+++++++.
T Consensus       119 ~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~-~~l~~~~~~L~pgG~lv~~  180 (239)
T 2hnk_A          119 GSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYP-NYYPLILKLLKPGGLLIAD  180 (239)
T ss_dssp             SCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHH-HHHHHHHHHEEEEEEEEEE
T ss_pred             CCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHH-HHHHHHHHHcCCCeEEEEE
Confidence            9987643322               1 5799999997644333 3444444433467777765

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.99  E-value=4.7e-09  Score=108.00  Aligned_cols=126  Identities=16%  Similarity=0.146  Sum_probs=84.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHH-------HHHHhhCCC
Q 044572          275 SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF-------EKTVSRLPK  347 (457)
Q Consensus       275 ~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A-------~~Na~~~~~  347 (457)
                      ..+-|........+++.+ . +.++.+|||+|||+|.+++.+|...++.+|+|||+++.+++.|       ++|++.++ 
T Consensus       221 ~~yGet~p~~v~~ml~~l-~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G-  297 (433)
T 1u2z_A          221 YVYGELLPNFLSDVYQQC-Q-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG-  297 (433)
T ss_dssp             GCCCCBCHHHHHHHHHHT-T-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             cccccccHHHHHHHHHhc-C-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC-
Confidence            344455555555555432 1 2478999999999999999999876667999999999999999       88988732 


Q ss_pred             CC-CCcEEEEEccCCcCc---ccccCCccEEEECCCCCCcc-HHHHHHHHhcCCCCcEEEEe
Q 044572          348 SV-DGNISWHNADNSIEP---LSWLVGSDVLVVDPPRKGLD-SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       348 ~~-~~nv~~~~~d~~~~~---~~~~~~~D~vi~DPPR~Gl~-~~v~~~l~~~~~~~~ivyvs  404 (457)
                       . ..|++++++|.....   ......||+|+++..-.+-+ ..+++.+.+...+++.+++.
T Consensus       298 -l~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          298 -MRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             -BCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             -CCCCceEEEEcCccccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEe
Confidence             2 368999998765321   11135799999985432211 12333444433466666664

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.99  E-value=1.7e-09  Score=99.48  Aligned_cols=100  Identities=14%  Similarity=0.080  Sum_probs=76.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.+++.++...+..+|+|+|+++.+++.|++|++.+   ...+++++++|+.+...  .+.||+|+++
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~--~~~~D~i~~~  139 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL---KLENIEPVQSRVEEFPS--EPPFDGVISR  139 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT---TCSSEEEEECCTTTSCC--CSCEEEEECS
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCCeEEEecchhhCCc--cCCcCEEEEe
Confidence            478999999999999999998655569999999999999999999873   33569999999987542  2579999986


Q ss_pred             CCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          378 PPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .- .. ...+++.+...-.+++.+++.
T Consensus       140 ~~-~~-~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          140 AF-AS-LNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             CS-SS-HHHHHHHHTTSEEEEEEEEEE
T ss_pred             cc-CC-HHHHHHHHHHhcCCCcEEEEE
Confidence            42 11 134555555543466666664

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.99  E-value=6.6e-09  Score=101.64  Aligned_cols=112  Identities=8%  Similarity=-0.023  Sum_probs=82.2

Q ss_pred             HHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572          286 DILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE  363 (457)
Q Consensus       286 ~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~  363 (457)
                      ...+..+.+.+  .++.+|||+|||+|.+++.+++..+ .+|+|||+|+.+++.|+++++.+  +..++++++.+|+.+.
T Consensus        58 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~  134 (302)
T 3hem_A           58 YAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEV--DSPRRKEVRIQGWEEF  134 (302)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHS--CCSSCEEEEECCGGGC
T ss_pred             HHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhc--CCCCceEEEECCHHHc
Confidence            34455555554  3688999999999999999998644 58999999999999999999874  3345899999999765


Q ss_pred             cccccCCccEEEECCCCC---------Ccc--HHHHHHHHhcCCCCcEEEEe
Q 044572          364 PLSWLVGSDVLVVDPPRK---------GLD--SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       364 ~~~~~~~~D~vi~DPPR~---------Gl~--~~v~~~l~~~~~~~~ivyvs  404 (457)
                          .+.||+|++.-.-.         |..  ..+++.+.++-.+++.+++.
T Consensus       135 ----~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  182 (302)
T 3hem_A          135 ----DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH  182 (302)
T ss_dssp             ----CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEE
T ss_pred             ----CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence                46899998853211         111  34666666654566666665

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.99  E-value=6.5e-09  Score=98.38  Aligned_cols=102  Identities=18%  Similarity=0.027  Sum_probs=71.9

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--cccCCccE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSDV  373 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~~~~~D~  373 (457)
                      .+|++|||+|||+|.++..+|...+ ..+|+|||+++.+++.+.+.++..     .|+.++.+|+.....  ...+.||+
T Consensus        75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-----~nv~~i~~Da~~~~~~~~~~~~~D~  149 (232)
T 3id6_C           75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-----PNIFPLLADARFPQSYKSVVENVDV  149 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-----TTEEEEECCTTCGGGTTTTCCCEEE
T ss_pred             CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----CCeEEEEcccccchhhhccccceEE
Confidence            4799999999999999999997643 459999999999987766665541     479999999875321  12357999


Q ss_pred             EEECCCCCCccHHHHHHHH-hcCCCCcEEEE
Q 044572          374 LVVDPPRKGLDSSLVHALQ-SIGSAERKAKS  403 (457)
Q Consensus       374 vi~DPPR~Gl~~~v~~~l~-~~~~~~~ivyv  403 (457)
                      |++|-+-......+...+. .+++.++++++
T Consensus       150 I~~d~a~~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          150 LYVDIAQPDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             EEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEecCCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence            9999775332222334444 46544444443

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.98  E-value=2.9e-09  Score=106.94  Aligned_cols=101  Identities=16%  Similarity=0.122  Sum_probs=77.4

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.+++.+|+. ++.+|+|||+| ++++.|++|++.+  +..++++++++|+.+.... .+.||+|+.+
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s-~~l~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~-~~~fD~Iis~  140 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECS-SISDYAVKIVKAN--KLDHVVTIIKGKVEEVELP-VEKVDIIISE  140 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS-THHHHHHHHHHHT--TCTTTEEEEESCTTTCCCS-SSCEEEEEEC
T ss_pred             CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcH-HHHHHHHHHHHHc--CCCCcEEEEECcHHHccCC-CCceEEEEEc
Confidence            6899999999999999999985 67799999999 5999999999874  3345699999999876321 3679999999


Q ss_pred             CCC-----CCccHHHHHHHHhcCCCCcEEEE
Q 044572          378 PPR-----KGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       378 PPR-----~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      +.-     ......+++.+.++-.++++++.
T Consensus       141 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          141 WMGYCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             CCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            852     23334566666543346666543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.97  E-value=2.2e-09  Score=107.21  Aligned_cols=108  Identities=14%  Similarity=0.084  Sum_probs=80.5

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC-CCCcEEEEEccCCcCcccc-cCCccEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS-VDGNISWHNADNSIEPLSW-LVGSDVL  374 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~-~~~nv~~~~~d~~~~~~~~-~~~~D~v  374 (457)
                      ....+|||+|||+|.+++.+++..+..+|++||+|+.+++.|++|+..+..+ ...+++++.+|+.+.+... .+.||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            4578999999999999999997644579999999999999999997642001 1358999999987754332 2579999


Q ss_pred             EECCCCC-C----c-cHHHHHHHHhcCCCCcEEEEe
Q 044572          375 VVDPPRK-G----L-DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       375 i~DPPR~-G----l-~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+|++-. +    + ..++++.+.+.-.+++++.+.
T Consensus       199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            9998731 1    1 346676666654577777775

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.97  E-value=4.1e-09  Score=104.99  Aligned_cols=134  Identities=13%  Similarity=0.093  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCC-----CC---CCCc
Q 044572          282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLP-----KS---VDGN  352 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~-----~~---~~~n  352 (457)
                      +.....++..+ . +.++.+|||+|||+|.+++.+++..+. .+|+|+|+++.+++.|++|++..+     ++   ...+
T Consensus        91 ~~~~~~~l~~l-~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~  168 (336)
T 2b25_A           91 PKDINMILSMM-D-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  168 (336)
T ss_dssp             HHHHHHHHHHH-T-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             HHHHHHHHHhc-C-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCc
Confidence            33344444433 2 347899999999999999999986433 699999999999999999987421     11   1358


Q ss_pred             EEEEEccCCcCcccc-cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHH
Q 044572          353 ISWHNADNSIEPLSW-LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKE  425 (457)
Q Consensus       353 v~~~~~d~~~~~~~~-~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~  425 (457)
                      ++++.+|+.+....+ ...||+|++|+|..-   .+++.+.+.-.+++.+++.     +........+.+.++.
T Consensus       169 v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~---~~l~~~~~~LkpgG~lv~~-----~~~~~~~~~~~~~l~~  234 (336)
T 2b25_A          169 VDFIHKDISGATEDIKSLTFDAVALDMLNPH---VTLPVFYPHLKHGGVCAVY-----VVNITQVIELLDGIRT  234 (336)
T ss_dssp             EEEEESCTTCCC-------EEEEEECSSSTT---TTHHHHGGGEEEEEEEEEE-----ESSHHHHHHHHHHHHH
T ss_pred             eEEEECChHHcccccCCCCeeEEEECCCCHH---HHHHHHHHhcCCCcEEEEE-----eCCHHHHHHHHHHHHh
Confidence            999999998764222 246999999987432   2444444433356655554     3333444555554443

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.97  E-value=1.7e-09  Score=102.06  Aligned_cols=121  Identities=11%  Similarity=0.003  Sum_probs=85.4

Q ss_pred             CCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044572          279 QANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN  357 (457)
Q Consensus       279 Q~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~  357 (457)
                      +.+......+ ..+... .++.+|||+|||+|..++.+|...+ ..+|++||+++++++.|++|++.+  +..++++++.
T Consensus        55 ~~~~~~~~~l-~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--g~~~~i~~~~  130 (232)
T 3cbg_A           55 QISPEQAQFL-GLLISL-TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA--GVAEKISLRL  130 (232)
T ss_dssp             SCCHHHHHHH-HHHHHH-HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH--TCGGGEEEEE
T ss_pred             CcCHHHHHHH-HHHHHh-cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEE
Confidence            5556555444 333333 2578999999999999999997533 359999999999999999998874  2335799999


Q ss_pred             ccCCcCccccc-----CCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          358 ADNSIEPLSWL-----VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       358 ~d~~~~~~~~~-----~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|+.+.+..+.     +.||+|++|.+..... ..++.+..+-.+++++++.
T Consensus       131 ~d~~~~l~~l~~~~~~~~fD~V~~d~~~~~~~-~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          131 GPALATLEQLTQGKPLPEFDLIFIDADKRNYP-RYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             SCHHHHHHHHHTSSSCCCEEEEEECSCGGGHH-HHHHHHHHTEEEEEEEEEE
T ss_pred             cCHHHHHHHHHhcCCCCCcCEEEECCCHHHHH-HHHHHHHHHcCCCeEEEEe
Confidence            99876443321     5799999998743332 3455554443467766664

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.97  E-value=3.7e-09  Score=99.04  Aligned_cols=108  Identities=15%  Similarity=0.065  Sum_probs=80.2

Q ss_pred             HHHHhhC---CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc
Q 044572          290 RKLQKYV---PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS  366 (457)
Q Consensus       290 ~~i~~~~---~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~  366 (457)
                      +.+.+.+   .++.+|||+|||+|.++..++......+|+|||+|+.+++.|++++...     .+++++++|+.+....
T Consensus        33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~  107 (234)
T 3dtn_A           33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN-----LKVKYIEADYSKYDFE  107 (234)
T ss_dssp             HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC-----TTEEEEESCTTTCCCC
T ss_pred             HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC-----CCEEEEeCchhccCCC
Confidence            4444443   2578999999999999999998754569999999999999999987652     2899999999876533


Q ss_pred             ccCCccEEEECCCCCCccH----HHHHHHHhcCCCCcEEEEe
Q 044572          367 WLVGSDVLVVDPPRKGLDS----SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       367 ~~~~~D~vi~DPPR~Gl~~----~v~~~l~~~~~~~~ivyvs  404 (457)
                        +.||+|++...-.-+..    .+++.+.+.-.+++.++++
T Consensus       108 --~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  147 (234)
T 3dtn_A          108 --EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINA  147 (234)
T ss_dssp             --SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence              68999999876433332    2555555543466666664

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.96  E-value=3.5e-09  Score=115.70  Aligned_cols=95  Identities=11%  Similarity=0.067  Sum_probs=72.2

Q ss_pred             HHHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCC-----------------------------------------
Q 044572          285 FDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARK-----------------------------------------  321 (457)
Q Consensus       285 ~~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~-----------------------------------------  321 (457)
                      .+.|...++...  .++..|||.+||||+|.+.+|..+.                                         
T Consensus       175 ~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~  254 (703)
T 3v97_A          175 KETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAE  254 (703)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcccc
Confidence            344445444443  3678999999999999999987520                                         


Q ss_pred             -CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-CCccEEEECCCCC
Q 044572          322 -CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-VGSDVLVVDPPRK  381 (457)
Q Consensus       322 -~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-~~~D~vi~DPPR~  381 (457)
                       ..+|+|+|+++.|++.|++|++.+  +..+.++|.++|+.+...... +.||+||.|||+.
T Consensus       255 ~~~~i~G~Did~~av~~A~~N~~~a--gv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG  314 (703)
T 3v97_A          255 YSSHFYGSDSDARVIQRARTNARLA--GIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYG  314 (703)
T ss_dssp             CCCCEEEEESCHHHHHHHHHHHHHT--TCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCC
T ss_pred             CCccEEEEECCHHHHHHHHHHHHHc--CCCCceEEEECChhhCccccccCCCCEEEeCCCcc
Confidence             137999999999999999999984  334569999999987533222 2799999999963

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.96  E-value=2.1e-09  Score=106.43  Aligned_cols=108  Identities=16%  Similarity=0.068  Sum_probs=78.7

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCC-CCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV-DGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~-~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      ....+|||+|||+|.++..+++..+..+|++||+++.+++.|++|+.....+. ..+++++.+|+.+.+....+.||+||
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            45689999999999999999976445799999999999999999976421111 36899999999775443346799999


Q ss_pred             ECCCCC-----Cc-cHHHHHHHHhcCCCCcEEEEe
Q 044572          376 VDPPRK-----GL-DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~-----Gl-~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|++-.     ++ ..++++.+.+.-.+++++.+.
T Consensus       187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~  221 (314)
T 2b2c_A          187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ  221 (314)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEE
Confidence            999631     11 145666665554577777775

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.96  E-value=5.6e-09  Score=100.11  Aligned_cols=104  Identities=9%  Similarity=0.016  Sum_probs=78.8

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.+++.++.. +..+|+|||+|+.+++.|+++++..  +..++++++++|+.+.... .+.||+|++
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~-~~~fD~i~~  120 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQS--GLQNRVTGIVGSMDDLPFR-NEELDLIWS  120 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEECCTTSCCCC-TTCEEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHc--CCCcCcEEEEcChhhCCCC-CCCEEEEEE
Confidence            46889999999999999999986 4569999999999999999998874  3346799999999775321 367999999


Q ss_pred             CCCCCCcc-HHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKGLD-SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~Gl~-~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ...-.-++ ..+++.+.+.-.+++.++++
T Consensus       121 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  149 (267)
T 3kkz_A          121 EGAIYNIGFERGLNEWRKYLKKGGYLAVS  149 (267)
T ss_dssp             SSCGGGTCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cCCceecCHHHHHHHHHHHcCCCCEEEEE
Confidence            77632222 24555555544466666665

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.95  E-value=2.2e-09  Score=106.24  Aligned_cols=108  Identities=11%  Similarity=-0.019  Sum_probs=81.5

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC--CCCcEEEEEccCCcCcccccCCccEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS--VDGNISWHNADNSIEPLSWLVGSDVL  374 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~--~~~nv~~~~~d~~~~~~~~~~~~D~v  374 (457)
                      ....+|||+|||+|.++..+++..+..+|++||+++.+++.|++|+...+.+  ...+++++.+|+.+.+....+.||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            4578999999999999999997645679999999999999999997531101  13689999999987544334679999


Q ss_pred             EECCCCCC----c-----cHHHHHHHHhcCCCCcEEEEe
Q 044572          375 VVDPPRKG----L-----DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       375 i~DPPR~G----l-----~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++|++...    .     ..++++.+.+.-.+++++.+.
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  194 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence            99998532    1     356677776654567777665

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.95  E-value=5.7e-09  Score=104.41  Aligned_cols=110  Identities=13%  Similarity=0.038  Sum_probs=78.5

Q ss_pred             HHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc
Q 044572          288 LLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL  365 (457)
Q Consensus       288 l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~  365 (457)
                      +.+.+.+.+  .++.+|||+|||+|.+++.+++. ++.+|+|||+++ +++.|++|++.+  +..++++++++|+.+...
T Consensus        52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~--~~~~~i~~~~~d~~~~~~  127 (340)
T 2fyt_A           52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLN--KLEDTITLIKGKIEEVHL  127 (340)
T ss_dssp             HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHT--TCTTTEEEEESCTTTSCC
T ss_pred             HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHc--CCCCcEEEEEeeHHHhcC
Confidence            334444432  36889999999999999999985 567999999996 999999999874  334689999999987532


Q ss_pred             cccCCccEEEECC-CCCC----ccHHHHHHHHhcCCCCcEEE
Q 044572          366 SWLVGSDVLVVDP-PRKG----LDSSLVHALQSIGSAERKAK  402 (457)
Q Consensus       366 ~~~~~~D~vi~DP-PR~G----l~~~v~~~l~~~~~~~~ivy  402 (457)
                      . .+.||+|+.++ +...    ....+++.+.+.-.++++++
T Consensus       128 ~-~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          128 P-VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             S-CSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             C-CCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            1 25799999998 3322    22345555544333555554

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.95  E-value=1.8e-09  Score=99.37  Aligned_cols=86  Identities=12%  Similarity=0.089  Sum_probs=68.9

Q ss_pred             HHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc
Q 044572          288 LLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW  367 (457)
Q Consensus       288 l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~  367 (457)
                      +.+.+.+++.++.+|||+|||+|.+++.++.. +..+|+|+|+++.+++.|++++..     ..+++++.+|+.+... .
T Consensus        32 ~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~-----~~~i~~~~~d~~~~~~-~  104 (215)
T 2pxx_A           32 FRALLEPELRPEDRILVLGCGNSALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAH-----VPQLRWETMDVRKLDF-P  104 (215)
T ss_dssp             HHHHHGGGCCTTCCEEEETCTTCSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTT-----CTTCEEEECCTTSCCS-C
T ss_pred             HHHHHHHhcCCCCeEEEECCCCcHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhccc-----CCCcEEEEcchhcCCC-C
Confidence            45556666677899999999999999999975 445899999999999999998753     2478999999977521 1


Q ss_pred             cCCccEEEECCCC
Q 044572          368 LVGSDVLVVDPPR  380 (457)
Q Consensus       368 ~~~~D~vi~DPPR  380 (457)
                      .+.||+|+.+++-
T Consensus       105 ~~~fD~v~~~~~~  117 (215)
T 2pxx_A          105 SASFDVVLEKGTL  117 (215)
T ss_dssp             SSCEEEEEEESHH
T ss_pred             CCcccEEEECcch
Confidence            3579999987763

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.95  E-value=1.1e-09  Score=102.33  Aligned_cols=112  Identities=16%  Similarity=0.175  Sum_probs=79.8

Q ss_pred             HHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC--CCCcEEEEEccCCcCcccc
Q 044572          290 RKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS--VDGNISWHNADNSIEPLSW  367 (457)
Q Consensus       290 ~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~--~~~nv~~~~~d~~~~~~~~  367 (457)
                      ..+...+.++.+|||+|||+|.+++.++.. + .+|+|+|+++.+++.|+++++..+..  ...+++++++|+.+.... 
T Consensus        22 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-   98 (235)
T 3sm3_A           22 PIIHNYLQEDDEILDIGCGSGKISLELASK-G-YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFH-   98 (235)
T ss_dssp             TTHHHHCCTTCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSC-
T ss_pred             HHHHHhCCCCCeEEEECCCCCHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCC-
Confidence            344455667899999999999999999986 3 49999999999999999998763211  123789999999875321 


Q ss_pred             cCCccEEEECCCCCCcc--H---HHHHHHHhcCCCCcEEEEe
Q 044572          368 LVGSDVLVVDPPRKGLD--S---SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       368 ~~~~D~vi~DPPR~Gl~--~---~v~~~l~~~~~~~~ivyvs  404 (457)
                      .+.||+|++...-.-+.  .   .+++.+.+.-.+++.++++
T Consensus        99 ~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (235)
T 3sm3_A           99 DSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLV  140 (235)
T ss_dssp             TTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            36799999976533221  1   3555555543466666664

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.95  E-value=1.6e-09  Score=101.55  Aligned_cols=118  Identities=12%  Similarity=0.100  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCC------CEEEEEeCCHHHHHHHHHHHhhCCC--CCCCcE
Q 044572          282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKC------RSVKCVEINKESQLSFEKTVSRLPK--SVDGNI  353 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~------~~V~gVE~~~~av~~A~~Na~~~~~--~~~~nv  353 (457)
                      +.....+++.+...+.++.+|||+|||+|.++..++...+.      .+|+++|+++++++.|++|++.++.  ....++
T Consensus        68 p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v  147 (227)
T 1r18_A           68 PHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL  147 (227)
T ss_dssp             HHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred             hHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCce
Confidence            44555555555434457889999999999999999975432      4899999999999999999875210  003579


Q ss_pred             EEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          354 SWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       354 ~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +++.+|+.+.+.. ...||+|+++.+...+..++.   ..++ +++.++++
T Consensus       148 ~~~~~d~~~~~~~-~~~fD~I~~~~~~~~~~~~~~---~~Lk-pgG~lvi~  193 (227)
T 1r18_A          148 LIVEGDGRKGYPP-NAPYNAIHVGAAAPDTPTELI---NQLA-SGGRLIVP  193 (227)
T ss_dssp             EEEESCGGGCCGG-GCSEEEEEECSCBSSCCHHHH---HTEE-EEEEEEEE
T ss_pred             EEEECCcccCCCc-CCCccEEEECCchHHHHHHHH---HHhc-CCCEEEEE
Confidence            9999998764322 257999999998665554333   2344 66777776

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.94  E-value=5.6e-09  Score=103.88  Aligned_cols=100  Identities=13%  Similarity=0.039  Sum_probs=75.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.+++.+|+. ++.+|+|||++ .+++.|+++++.+  +..++++++++|+.+.... .+.||+|+.+
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~~~~-~~~~D~Ivs~  112 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELN--GFSDKITLLRGKLEDVHLP-FPKVDIIISE  112 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHT--TCTTTEEEEESCTTTSCCS-SSCEEEEEEC
T ss_pred             CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHc--CCCCCEEEEECchhhccCC-CCcccEEEEe
Confidence            6889999999999999999974 66799999999 6999999999874  3446799999999875321 2579999999


Q ss_pred             CCCCCc-----cHHHHHHHHhcCCCCcEEE
Q 044572          378 PPRKGL-----DSSLVHALQSIGSAERKAK  402 (457)
Q Consensus       378 PPR~Gl-----~~~v~~~l~~~~~~~~ivy  402 (457)
                      ++-..+     -..++..+.++-.++++++
T Consensus       113 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          113 WMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             CchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence            884433     2345555544333565554

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.94  E-value=1.4e-09  Score=107.17  Aligned_cols=108  Identities=14%  Similarity=0.075  Sum_probs=78.5

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCC-CCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV-DGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~-~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      ..+.+|||+|||+|.+++.+++..+..+|++||+++++++.|++|+.....+. ..+++++.+|+.+.+....+.||+||
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            35789999999999999999976445799999999999999999975410011 36899999999775443346799999


Q ss_pred             ECCCCCC------ccHHHHHHHHhcCCCCcEEEEe
Q 044572          376 VDPPRKG------LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~G------l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|+|...      ...++++.+.+.-.+++++.+.
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  208 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ  208 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEe
Confidence            9998521      1124566655544477777765

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.94  E-value=5.2e-09  Score=97.98  Aligned_cols=96  Identities=20%  Similarity=0.052  Sum_probs=75.3

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.++..++...  .+|+|||+++.+++.|++|+..+   .  +++++++|+.+... ..+.||+|++
T Consensus        69 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~---~--~v~~~~~d~~~~~~-~~~~fD~v~~  140 (231)
T 1vbf_A           69 HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYY---N--NIKLILGDGTLGYE-EEKPYDRVVV  140 (231)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTC---S--SEEEEESCGGGCCG-GGCCEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhc---C--CeEEEECCcccccc-cCCCccEEEE
Confidence            468899999999999999999864  59999999999999999998762   2  79999999977332 2367999999


Q ss_pred             CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.+...+..++   ...++ +++.++++
T Consensus       141 ~~~~~~~~~~~---~~~L~-pgG~l~~~  164 (231)
T 1vbf_A          141 WATAPTLLCKP---YEQLK-EGGIMILP  164 (231)
T ss_dssp             SSBBSSCCHHH---HHTEE-EEEEEEEE
T ss_pred             CCcHHHHHHHH---HHHcC-CCcEEEEE
Confidence            98876665433   23444 56666665

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.93  E-value=1.7e-08  Score=97.71  Aligned_cols=112  Identities=10%  Similarity=-0.065  Sum_probs=81.2

Q ss_pred             HHHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572          285 FDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI  362 (457)
Q Consensus       285 ~~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~  362 (457)
                      ...+++.+.+.+  .++.+|||+|||+|.+++.++...++ +|+|||+|+.+++.|+++++..  +...+++++.+|+.+
T Consensus        49 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~  125 (287)
T 1kpg_A           49 QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANS--ENLRSKRVLLAGWEQ  125 (287)
T ss_dssp             HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTC--CCCSCEEEEESCGGG
T ss_pred             HHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhc--CCCCCeEEEECChhh
Confidence            344556666654  36889999999999999999954454 9999999999999999998863  334689999999865


Q ss_pred             CcccccCCccEEEECCCC-----CCccHHHHHHHHhcCCCCcEEEEe
Q 044572          363 EPLSWLVGSDVLVVDPPR-----KGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       363 ~~~~~~~~~D~vi~DPPR-----~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ..    +.||+|++.-.-     .. ...+++.+.+.-.+++.++++
T Consensus       126 ~~----~~fD~v~~~~~l~~~~~~~-~~~~l~~~~~~LkpgG~l~~~  167 (287)
T 1kpg_A          126 FD----EPVDRIVSIGAFEHFGHER-YDAFFSLAHRLLPADGVMLLH  167 (287)
T ss_dssp             CC----CCCSEEEEESCGGGTCTTT-HHHHHHHHHHHSCTTCEEEEE
T ss_pred             CC----CCeeEEEEeCchhhcChHH-HHHHHHHHHHhcCCCCEEEEE
Confidence            42    679999876321     11 134566665544466666664

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.93  E-value=4.7e-09  Score=98.00  Aligned_cols=118  Identities=15%  Similarity=0.131  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCC--CCCCcEEEEEc
Q 044572          282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPK--SVDGNISWHNA  358 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~--~~~~nv~~~~~  358 (457)
                      +.....+++.+...+.++.+|||+|||+|.++..++...+. .+|+++|+++.+++.|++|++.++.  ....+++++.+
T Consensus        61 p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  140 (226)
T 1i1n_A           61 PHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG  140 (226)
T ss_dssp             HHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEEC
Confidence            44444555554433457899999999999999999976432 4999999999999999999876321  00357999999


Q ss_pred             cCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          359 DNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       359 d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+...... ...||+|+++.+...+...+   ...++ +++.++++
T Consensus       141 d~~~~~~~-~~~fD~i~~~~~~~~~~~~~---~~~Lk-pgG~lv~~  181 (226)
T 1i1n_A          141 DGRMGYAE-EAPYDAIHVGAAAPVVPQAL---IDQLK-PGGRLILP  181 (226)
T ss_dssp             CGGGCCGG-GCCEEEEEECSBBSSCCHHH---HHTEE-EEEEEEEE
T ss_pred             CcccCccc-CCCcCEEEECCchHHHHHHH---HHhcC-CCcEEEEE
Confidence            98754322 35799999999865544332   23454 55555554

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.93  E-value=4.6e-09  Score=103.48  Aligned_cols=129  Identities=14%  Similarity=0.046  Sum_probs=87.3

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhC-CCCCCCcEEEEEccCCcCccc-ccCCccEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL-PKSVDGNISWHNADNSIEPLS-WLVGSDVL  374 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~-~~~~~~nv~~~~~d~~~~~~~-~~~~~D~v  374 (457)
                      ..+.+|||+|||+|.++..+++..+..+|++||+|+.+++.|++++... ......+++++.+|+.+.+.. ..+.||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            4678999999999999999997544579999999999999999987321 011236899999999776533 23579999


Q ss_pred             EECCCCCC-----c-cHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHh
Q 044572          375 VVDPPRKG-----L-DSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEA  426 (457)
Q Consensus       375 i~DPPR~G-----l-~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~  426 (457)
                      ++|++...     + ..++++.+.+.-.+++++.+.+.+.. ......+.+...+++.
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~-~~~~~~~~~~~~l~~~  230 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIW-LDLELIEKMSRFIRET  230 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTT-TCHHHHHHHHHHHHHH
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcc-cchHHHHHHHHHHHhC
Confidence            99997421     1 14566666654446777666522211 1122345666666665

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.93  E-value=2e-09  Score=105.69  Aligned_cols=109  Identities=17%  Similarity=0.087  Sum_probs=80.5

Q ss_pred             HHhhCCCCCeEEEEcccccHHHHHHH-hhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCC
Q 044572          292 LQKYVPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG  370 (457)
Q Consensus       292 i~~~~~~~~~vLDl~cG~G~~sl~lA-~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~  370 (457)
                      +...+.++.+|||+|||+|.+++.+| ......+|+|||+++.+++.|++|++..  +..++++++++|+.+....  +.
T Consensus       112 l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~--~~  187 (305)
T 3ocj_A          112 LQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGH--ALAGQITLHRQDAWKLDTR--EG  187 (305)
T ss_dssp             HHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTS--TTGGGEEEEECCGGGCCCC--SC
T ss_pred             HHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhc--CCCCceEEEECchhcCCcc--CC
Confidence            33345678999999999999999986 2233469999999999999999999863  3335699999999876432  68


Q ss_pred             ccEEEECCCCCCc-cH----HHHHHHHhcCCCCcEEEEe
Q 044572          371 SDVLVVDPPRKGL-DS----SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       371 ~D~vi~DPPR~Gl-~~----~v~~~l~~~~~~~~ivyvs  404 (457)
                      ||+|+++.+-.-+ +.    .+++.+.+.-.+++.++++
T Consensus       188 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  226 (305)
T 3ocj_A          188 YDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTS  226 (305)
T ss_dssp             EEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            9999998764322 12    2455555544477777776

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.92  E-value=6e-09  Score=94.68  Aligned_cols=99  Identities=19%  Similarity=0.024  Sum_probs=74.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.++..++.. + .+|+|+|+++.+++.|+++++..   ...+++++++|+.+...  .+.||+|++.
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~~~d~~~~~~--~~~~D~v~~~  104 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAAN-G-YDVDAWDKNAMSIANVERIKSIE---NLDNLHTRVVDLNNLTF--DRQYDFILST  104 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHH---TCTTEEEEECCGGGCCC--CCCEEEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHHhC---CCCCcEEEEcchhhCCC--CCCceEEEEc
Confidence            5789999999999999999986 3 49999999999999999998763   23579999999987543  4679999987


Q ss_pred             CCCCCc----cHHHHHHHHhcCCCCcEEEE
Q 044572          378 PPRKGL----DSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       378 PPR~Gl----~~~v~~~l~~~~~~~~ivyv  403 (457)
                      ..-.-+    ...+++.+.+.-.+++.+++
T Consensus       105 ~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~  134 (199)
T 2xvm_A          105 VVLMFLEAKTIPGLIANMQRCTKPGGYNLI  134 (199)
T ss_dssp             SCGGGSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            653222    13455555554345555444

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.92  E-value=3.2e-09  Score=111.05  Aligned_cols=115  Identities=12%  Similarity=0.094  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572          284 AFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS  361 (457)
Q Consensus       284 ~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~  361 (457)
                      .++.+.+.+.+.+.  ++.+|||+|||+|.+++.+|+ .++.+|+|||+++ +++.|++|++.+  +..++++++.+|+.
T Consensus       142 ~t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~-~l~~A~~~~~~~--gl~~~v~~~~~d~~  217 (480)
T 3b3j_A          142 RTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEAST-MAQHAEVLVKSN--NLTDRIVVIPGKVE  217 (480)
T ss_dssp             HHHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHH-HHHHHHHHHHHT--TCTTTEEEEESCTT
T ss_pred             hHHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHH-HHHHHHHHHHHc--CCCCcEEEEECchh
Confidence            45556666665442  578999999999999999997 4567999999998 999999999884  33468999999998


Q ss_pred             cCcccccCCccEEEECCC-CCCccHHHHHHH---HhcCCCCcEEEEe
Q 044572          362 IEPLSWLVGSDVLVVDPP-RKGLDSSLVHAL---QSIGSAERKAKSL  404 (457)
Q Consensus       362 ~~~~~~~~~~D~vi~DPP-R~Gl~~~v~~~l---~~~~~~~~ivyvs  404 (457)
                      +..  ..++||+||.+++ .........+.+   .++-.++++++++
T Consensus       218 ~~~--~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          218 EVS--LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             TCC--CSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             hCc--cCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence            742  2357999999998 222223333333   2322366666653

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.92  E-value=1.6e-08  Score=96.96  Aligned_cols=119  Identities=15%  Similarity=0.152  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEcc
Q 044572          282 TRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD  359 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d  359 (457)
                      ......+.+.+.+.+.  ++.+|||+|||+|.+++.+++..+ .+|+|+|+|+.+++.|+++++..  +..++++++.+|
T Consensus        43 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~--~~~~~~~~~~~d  119 (273)
T 3bus_A           43 DDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD-VRVTGISISRPQVNQANARATAA--GLANRVTFSYAD  119 (273)
T ss_dssp             HHHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSC-CEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEECC
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEECc
Confidence            3445566666666553  688999999999999999997543 59999999999999999998873  334579999999


Q ss_pred             CCcCcccccCCccEEEECCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          360 NSIEPLSWLVGSDVLVVDPPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       360 ~~~~~~~~~~~~D~vi~DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.+.... .+.||+|++.-.-.-+  ...+++.+.+.-.+++.++++
T Consensus       120 ~~~~~~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~  165 (273)
T 3bus_A          120 AMDLPFE-DASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIA  165 (273)
T ss_dssp             TTSCCSC-TTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cccCCCC-CCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEE
Confidence            9875321 3579999875542222  235666666654466666664

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.92  E-value=6.2e-09  Score=95.82  Aligned_cols=114  Identities=14%  Similarity=0.106  Sum_probs=80.9

Q ss_pred             HHHHHHHhhCC-CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc
Q 044572          287 ILLRKLQKYVP-YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL  365 (457)
Q Consensus       287 ~l~~~i~~~~~-~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~  365 (457)
                      .+.+.+.+.+. ...+|||+|||+|.++..++.. ...+|+|+|+++.+++.|+++++..  +...+++++++|+.+...
T Consensus        31 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~  107 (219)
T 3dlc_A           31 IIAENIINRFGITAGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADA--NLNDRIQIVQGDVHNIPI  107 (219)
T ss_dssp             HHHHHHHHHHCCCEEEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEECBTTBCSS
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhc--cccCceEEEEcCHHHCCC
Confidence            34444444332 2339999999999999999986 3358999999999999999999874  334589999999987532


Q ss_pred             cccCCccEEEECCCCCC--ccHHHHHHHHhcCCCCcEEEEe
Q 044572          366 SWLVGSDVLVVDPPRKG--LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       366 ~~~~~~D~vi~DPPR~G--l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                       ..+.||+|+++..-.-  -...+++.+.+.-.+++.++++
T Consensus       108 -~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  147 (219)
T 3dlc_A          108 -EDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIG  147 (219)
T ss_dssp             -CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -CcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEE
Confidence             1357999999765211  1134566665544467777765

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.91  E-value=6e-09  Score=101.54  Aligned_cols=108  Identities=14%  Similarity=0.060  Sum_probs=80.7

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC-CCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS-VDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~-~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      ..+.+|||+|||+|.++..+++..+..+|++||+++.+++.|++++..++.. ...+++++.+|+.+.+....+.||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            3578999999999999999997644579999999999999999997642101 136899999999775443346799999


Q ss_pred             ECCCCC-----Cc-cHHHHHHHHhcCCCCcEEEEe
Q 044572          376 VDPPRK-----GL-DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~-----Gl-~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|++-.     .+ ..++++.+.+.-.+++++.+.
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  191 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ  191 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            998632     11 146677666654467777665

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.91  E-value=5.4e-09  Score=96.56  Aligned_cols=106  Identities=12%  Similarity=-0.025  Sum_probs=71.8

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC---------CCCCcEEEEEccCCcCcccc
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK---------SVDGNISWHNADNSIEPLSW  367 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~---------~~~~nv~~~~~d~~~~~~~~  367 (457)
                      .++.+|||+|||+|.++..+|+. + .+|+|||+|+.|++.|+++++....         ....+++|+++|+.+.....
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~-g-~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~   98 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQ-G-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD   98 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHH-C-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHC-C-CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence            46889999999999999999986 3 3899999999999999987643100         01257899999998864321


Q ss_pred             cCCccEEEECCCCCCcc----HHHHHHHHhcCCCCcE-EEEe
Q 044572          368 LVGSDVLVVDPPRKGLD----SSLVHALQSIGSAERK-AKSL  404 (457)
Q Consensus       368 ~~~~D~vi~DPPR~Gl~----~~v~~~l~~~~~~~~i-vyvs  404 (457)
                      .+.||+|+..---.-++    ..+++.+.+.-++++. ++++
T Consensus        99 ~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~  140 (203)
T 1pjz_A           99 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  140 (203)
T ss_dssp             HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            25799998532111111    1345555554445654 4443

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.91  E-value=1.1e-08  Score=99.91  Aligned_cols=117  Identities=9%  Similarity=0.004  Sum_probs=82.8

Q ss_pred             HHHHHHHHhhC-CCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572          286 DILLRKLQKYV-PYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE  363 (457)
Q Consensus       286 ~~l~~~i~~~~-~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~  363 (457)
                      +.+++.+..+. .++.+|||+|||+|.++..++... ...+|+|||+|+.+++.|+++++... +...+++|+++|+.+.
T Consensus        23 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~v~~~~~d~~~~  101 (299)
T 3g5t_A           23 SDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP-DTYKNVSFKISSSDDF  101 (299)
T ss_dssp             HHHHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC--CCTTEEEEECCTTCC
T ss_pred             HHHHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcc-CCCCceEEEEcCHHhC
Confidence            34556666654 368899999999999999999643 46799999999999999999988741 2346899999999875


Q ss_pred             cccc-----cCCccEEEECCCCCC-ccHHHHHHHHhcCCCCcEEEE
Q 044572          364 PLSW-----LVGSDVLVVDPPRKG-LDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       364 ~~~~-----~~~~D~vi~DPPR~G-l~~~v~~~l~~~~~~~~ivyv  403 (457)
                      ....     .+.||+|++.-.-.- -...+++.+.+...+++.+++
T Consensus       102 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          102 KFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             GGGCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             CccccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence            4321     157999998654111 112455555554345666555

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.91  E-value=7.1e-09  Score=100.45  Aligned_cols=99  Identities=19%  Similarity=0.069  Sum_probs=75.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.+++.++.. + .+|+|||+|+.+++.|+++++.+   +. +++++++|+.+...  .+.||+|+++
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~-g-~~v~~vD~s~~~~~~a~~~~~~~---~~-~~~~~~~d~~~~~~--~~~fD~i~~~  191 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL-G-YDVTSWDHNENSIAFLNETKEKE---NL-NISTALYDINAANI--QENYDFIVST  191 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT---TC-CEEEEECCGGGCCC--CSCEEEEEEC
T ss_pred             CCCcEEEECCCCCHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHHHc---CC-ceEEEEeccccccc--cCCccEEEEc
Confidence            6889999999999999999986 3 39999999999999999999873   22 89999999987543  4679999998


Q ss_pred             CCCCCc----cHHHHHHHHhcCCCCcEEEEe
Q 044572          378 PPRKGL----DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PPR~Gl----~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ..-.-+    -..+++.+.+.-.+++.+++.
T Consensus       192 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (286)
T 3m70_A          192 VVFMFLNRERVPSIIKNMKEHTNVGGYNLIV  222 (286)
T ss_dssp             SSGGGSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cchhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            753211    124566565544456654443

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.91  E-value=6.7e-09  Score=102.23  Aligned_cols=123  Identities=9%  Similarity=-0.033  Sum_probs=84.7

Q ss_pred             CCCCCCHHHHHHHHHHHHhhCC---CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCc
Q 044572          276 SFGQANTRAFDILLRKLQKYVP---YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGN  352 (457)
Q Consensus       276 ~FfQ~n~~~~~~l~~~i~~~~~---~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~n  352 (457)
                      .|.|.+ ...+...+.+.+.+.   ++.+|||+|||+|.+++.+++..+ .+|+|||+++.+++.|++|++.+  +..++
T Consensus        93 ~f~~~~-~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~--~~~~~  168 (312)
T 3vc1_A           93 VIAELH-RLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFG-SRVEGVTLSAAQADFGNRRAREL--RIDDH  168 (312)
T ss_dssp             HHHHHH-HHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHT--TCTTT
T ss_pred             HHhhhh-hHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHc--CCCCc
Confidence            444433 334444566666553   678999999999999999998633 48999999999999999999874  33458


Q ss_pred             EEEEEccCCcCcccccCCccEEEECCC--CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          353 ISWHNADNSIEPLSWLVGSDVLVVDPP--RKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       353 v~~~~~d~~~~~~~~~~~~D~vi~DPP--R~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++++++|+.+... ..+.||+|+..--  ..+ ...+++.+.+.-.+++.+++.
T Consensus       169 v~~~~~d~~~~~~-~~~~fD~V~~~~~l~~~~-~~~~l~~~~~~LkpgG~l~~~  220 (312)
T 3vc1_A          169 VRSRVCNMLDTPF-DKGAVTASWNNESTMYVD-LHDLFSEHSRFLKVGGRYVTI  220 (312)
T ss_dssp             EEEEECCTTSCCC-CTTCEEEEEEESCGGGSC-HHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEECChhcCCC-CCCCEeEEEECCchhhCC-HHHHHHHHHHHcCCCcEEEEE
Confidence            9999999987532 1367999987432  112 234555555543355555443

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.90  E-value=1.2e-08  Score=98.86  Aligned_cols=103  Identities=12%  Similarity=0.068  Sum_probs=77.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      .+.+|||+|||+|.++..++..  ..+|+|||+++.+++.|+++++..  +...+++++++|+.+......+.||+|++.
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  143 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAK--GVSDNMQFIHCAAQDVASHLETPVDLILFH  143 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC---CCGGGEEEEESCGGGTGGGCSSCEEEEEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc--CCCcceEEEEcCHHHhhhhcCCCceEEEEC
Confidence            5679999999999999999986  349999999999999999998863  233689999999987653234689999986


Q ss_pred             CCCCC--ccHHHHHHHHhcCCCCcEEEEe
Q 044572          378 PPRKG--LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PPR~G--l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      -.-.-  -...+++.+.++-.+++.++++
T Consensus       144 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  172 (285)
T 4htf_A          144 AVLEWVADPRSVLQTLWSVLRPGGVLSLM  172 (285)
T ss_dssp             SCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             chhhcccCHHHHHHHHHHHcCCCeEEEEE
Confidence            43211  1134666666654567777665

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.89  E-value=1.2e-08  Score=94.47  Aligned_cols=113  Identities=16%  Similarity=0.108  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572          282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN  360 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~  360 (457)
                      ......+++.+ . +.++.+|||+|||+|.++..++...+. .+|+++|+++.+++.|+++++.+   +..+++++.+|+
T Consensus        63 ~~~~~~~~~~~-~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~~~v~~~~~d~  137 (215)
T 2yxe_A           63 IHMVGMMCELL-D-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKL---GYDNVIVIVGDG  137 (215)
T ss_dssp             HHHHHHHHHHT-T-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH---TCTTEEEEESCG
T ss_pred             HHHHHHHHHhh-C-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCCeEEEECCc
Confidence            44444444432 1 246889999999999999999986522 59999999999999999998763   235799999998


Q ss_pred             CcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          361 SIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       361 ~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ...... ...||+|+++.+...+..++   ...++ +++.++++
T Consensus       138 ~~~~~~-~~~fD~v~~~~~~~~~~~~~---~~~L~-pgG~lv~~  176 (215)
T 2yxe_A          138 TLGYEP-LAPYDRIYTTAAGPKIPEPL---IRQLK-DGGKLLMP  176 (215)
T ss_dssp             GGCCGG-GCCEEEEEESSBBSSCCHHH---HHTEE-EEEEEEEE
T ss_pred             ccCCCC-CCCeeEEEECCchHHHHHHH---HHHcC-CCcEEEEE
Confidence            654321 35799999998865555432   33444 56666665

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.89  E-value=8e-09  Score=97.04  Aligned_cols=110  Identities=15%  Similarity=0.056  Sum_probs=79.7

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc
Q 044572          286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL  365 (457)
Q Consensus       286 ~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~  365 (457)
                      ..+.+.+.+.+.++.+|||+|||+|.++..++..   .+|+|+|+++.+++.|++++..++    .+++++++|+.+...
T Consensus        21 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~   93 (243)
T 3d2l_A           21 PEWVAWVLEQVEPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETN----RHVDFWVQDMRELEL   93 (243)
T ss_dssp             HHHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCGGGCCC
T ss_pred             HHHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcC----CceEEEEcChhhcCC
Confidence            3455666666777899999999999999999974   599999999999999999987632    468999999877532


Q ss_pred             cccCCccEEEECC-CCCCc-----cHHHHHHHHhcCCCCcEEEEe
Q 044572          366 SWLVGSDVLVVDP-PRKGL-----DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       366 ~~~~~~D~vi~DP-PR~Gl-----~~~v~~~l~~~~~~~~ivyvs  404 (457)
                        .+.||+|++.. .-.-+     ...+++.+.++-.+++.++++
T Consensus        94 --~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A           94 --PEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             --SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence              26799999865 21111     113444444433466666664

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.87  E-value=2.9e-08  Score=97.64  Aligned_cols=112  Identities=10%  Similarity=-0.006  Sum_probs=80.6

Q ss_pred             HHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572          286 DILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE  363 (457)
Q Consensus       286 ~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~  363 (457)
                      ..+++.+.+.+.  ++.+|||+|||+|.+++.+++..++ +|+|||+|+.+++.|+++++..  +..++++++.+|+.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~  152 (318)
T 2fk8_A           76 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASI--DTNRSRQVLLQGWEDF  152 (318)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTS--CCSSCEEEEESCGGGC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhc--CCCCceEEEECChHHC
Confidence            445566666543  6889999999999999999976343 9999999999999999998863  3345799999998664


Q ss_pred             cccccCCccEEEECCCCCCc----cHHHHHHHHhcCCCCcEEEEe
Q 044572          364 PLSWLVGSDVLVVDPPRKGL----DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       364 ~~~~~~~~D~vi~DPPR~Gl----~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .    +.||+|+..-.-.-+    ...+++.+.+.-.+++.+++.
T Consensus       153 ~----~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  193 (318)
T 2fk8_A          153 A----EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ  193 (318)
T ss_dssp             C----CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred             C----CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            2    679999976431111    134566555544466666654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.87  E-value=5.1e-09  Score=98.87  Aligned_cols=117  Identities=13%  Similarity=0.018  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHhhCC---CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEcc
Q 044572          283 RAFDILLRKLQKYVP---YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD  359 (457)
Q Consensus       283 ~~~~~l~~~i~~~~~---~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d  359 (457)
                      ...+.+++.+...+.   ++.+|||+|||+|.++..++... ..+|+|||+++.+++.|++++...   ...+++++.+|
T Consensus        61 ~~~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~~~d  136 (241)
T 2ex4_A           61 NSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEE---GKRVRNYFCCG  136 (241)
T ss_dssp             HHHHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGG---GGGEEEEEECC
T ss_pred             HhHHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhc---CCceEEEEEcC
Confidence            344555555554432   47899999999999999988753 569999999999999999998763   13578999999


Q ss_pred             CCcCcccccCCccEEEECCCCCCccH----HHHHHHHhcCCCCcEEEEe
Q 044572          360 NSIEPLSWLVGSDVLVVDPPRKGLDS----SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       360 ~~~~~~~~~~~~D~vi~DPPR~Gl~~----~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.+.... .+.||+|+++-.-.-+..    .+++.+.+...+++.++++
T Consensus       137 ~~~~~~~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~  184 (241)
T 2ex4_A          137 LQDFTPE-PDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIK  184 (241)
T ss_dssp             GGGCCCC-SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhcCCC-CCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            8765422 347999998743222222    3455555543466666664

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.87  E-value=4.3e-09  Score=102.40  Aligned_cols=103  Identities=14%  Similarity=0.160  Sum_probs=73.8

Q ss_pred             CCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCE----EEEEeCCHHHHHHHHHHHhhCCCCCCCcE
Q 044572          278 GQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRS----VKCVEINKESQLSFEKTVSRLPKSVDGNI  353 (457)
Q Consensus       278 fQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~----V~gVE~~~~av~~A~~Na~~~~~~~~~nv  353 (457)
                      |..+....+.+++.+.  +.++.+|||+|||+|.++..++....  +    |+|||+|+++++.+++|. .      .++
T Consensus        24 fL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~--~~~~~V~avDid~~~l~~a~~~~-~------~~v   92 (279)
T 3uzu_A           24 FLVDHGVIDAIVAAIR--PERGERMVEIGPGLGALTGPVIARLA--TPGSPLHAVELDRDLIGRLEQRF-G------ELL   92 (279)
T ss_dssp             EECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHC--BTTBCEEEEECCHHHHHHHHHHH-G------GGE
T ss_pred             ccCCHHHHHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCC--CcCCeEEEEECCHHHHHHHHHhc-C------CCc
Confidence            3345555555555432  23688999999999999999998643  5    999999999999999984 2      478


Q ss_pred             EEEEccCCcCccc-ccC----CccEEEECCCCCCccHHHHHHH
Q 044572          354 SWHNADNSIEPLS-WLV----GSDVLVVDPPRKGLDSSLVHAL  391 (457)
Q Consensus       354 ~~~~~d~~~~~~~-~~~----~~D~vi~DPPR~Gl~~~v~~~l  391 (457)
                      +++++|+.+.... ...    ..+.||.|+|+.--.+-+.+.+
T Consensus        93 ~~i~~D~~~~~~~~~~~~~~~~~~~vv~NlPY~iss~il~~ll  135 (279)
T 3uzu_A           93 ELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNISSPLLFHLM  135 (279)
T ss_dssp             EEEESCGGGCCGGGGSCSSSSCCEEEEEECCHHHHHHHHHHHG
T ss_pred             EEEECChhcCChhHhcccccCCceEEEEccCccccHHHHHHHH
Confidence            9999999876432 111    3468999999854443333333

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.87  E-value=1.4e-08  Score=96.92  Aligned_cols=102  Identities=10%  Similarity=0.094  Sum_probs=73.8

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.++..++...  .+|+|+|+|+.+++.|+++++..   +..+++++.+|+.+.... .+.||+|+.
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~---~~~~v~~~~~d~~~l~~~-~~~fD~V~~  109 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGN---GHQQVEYVQGDAEQMPFT-DERFHIVTC  109 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCC-CCCSC-TTCEEEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhc---CCCceEEEEecHHhCCCC-CCCEEEEEE
Confidence            368899999999999999999864  39999999999999999998773   345899999999875321 357999988


Q ss_pred             CCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .-.-.-+  ...+++.+.+.-.+++.++++
T Consensus       110 ~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~  139 (260)
T 1vl5_A          110 RIAAHHFPNPASFVSEAYRVLKKGGQLLLV  139 (260)
T ss_dssp             ESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhHhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence            5321100  124555555543466666653

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.87  E-value=1.6e-08  Score=93.74  Aligned_cols=106  Identities=15%  Similarity=0.112  Sum_probs=77.5

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc
Q 044572          286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL  365 (457)
Q Consensus       286 ~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~  365 (457)
                      +.+++.+..  .++.+|||+|||+|.++..++..  ..+|+|+|+++.+++.|++++.       .+++++++|+.+...
T Consensus        35 ~~~l~~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~d~~~~~~  103 (220)
T 3hnr_A           35 EDILEDVVN--KSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP-------KEFSITEGDFLSFEV  103 (220)
T ss_dssp             HHHHHHHHH--TCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC-------TTCCEESCCSSSCCC
T ss_pred             HHHHHHhhc--cCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC-------CceEEEeCChhhcCC
Confidence            344444433  26789999999999999999986  3499999999999999998754       367899999987643


Q ss_pred             cccCCccEEEECCCCCCccH----HHHHHHHhcCCCCcEEEEe
Q 044572          366 SWLVGSDVLVVDPPRKGLDS----SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       366 ~~~~~~D~vi~DPPR~Gl~~----~v~~~l~~~~~~~~ivyvs  404 (457)
                      .  +.||+|++.-.-.-+..    .+++.+.+.-.+++.++++
T Consensus       104 ~--~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~  144 (220)
T 3hnr_A          104 P--TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFA  144 (220)
T ss_dssp             C--SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             C--CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence            3  68999999754322222    1566665554567777775

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.87  E-value=1.9e-08  Score=94.97  Aligned_cols=102  Identities=14%  Similarity=0.057  Sum_probs=74.7

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.++..++...  .+|+|+|+++.+++.|+++++..   +..+++++.+|+.+... ..+.||+|++
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~-~~~~fD~v~~   93 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEK---GVENVRFQQGTAESLPF-PDDSFDIITC   93 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHH---TCCSEEEEECBTTBCCS-CTTCEEEEEE
T ss_pred             CCCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHc---CCCCeEEEecccccCCC-CCCcEEEEEE
Confidence            478999999999999999999864  49999999999999999998763   33589999999977432 1357999998


Q ss_pred             CCCCCC--ccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKG--LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~G--l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .-.-.-  -...+++.+.+.-.+++.+++.
T Consensus        94 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  123 (239)
T 1xxl_A           94 RYAAHHFSDVRKAVREVARVLKQDGRFLLV  123 (239)
T ss_dssp             ESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCchhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence            643111  1134555555543466666554

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.86  E-value=3.1e-09  Score=100.09  Aligned_cols=104  Identities=14%  Similarity=0.056  Sum_probs=74.5

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCC-HHHHHHH---HHHHhhCCCCCCCcEEEEEccCCcCcccccCCcc
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEIN-KESQLSF---EKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSD  372 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~-~~av~~A---~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D  372 (457)
                      .++.+|||+|||+|.+++.+|+.....+|+|||+| +.+++.|   +++++.   .+..|++|+++|+.+........+|
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~---~~~~~v~~~~~d~~~l~~~~~d~v~   99 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK---GGLSNVVFVIAAAESLPFELKNIAD   99 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGG---TCCSSEEEECCBTTBCCGGGTTCEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHH---cCCCCeEEEEcCHHHhhhhccCeEE
Confidence            46889999999999999999965445689999999 6666665   777765   2346899999999886433335678


Q ss_pred             EEEECCCCCCc-------cHHHHHHHHhcCCCCcEEEE
Q 044572          373 VLVVDPPRKGL-------DSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       373 ~vi~DPPR~Gl-------~~~v~~~l~~~~~~~~ivyv  403 (457)
                      .|.+++|..-.       ...+++.+.+.-.+++.+++
T Consensus       100 ~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A          100 SISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            88888874211       12456666655446666665

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.86  E-value=7e-09  Score=99.75  Aligned_cols=106  Identities=16%  Similarity=0.152  Sum_probs=73.6

Q ss_pred             HHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc
Q 044572          287 ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS  366 (457)
Q Consensus       287 ~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~  366 (457)
                      .+++.+.++...+.+|||+|||+|.++..++..  ..+|+|||+|+.|++.|++         ..+++++++|+++....
T Consensus        28 ~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~---------~~~v~~~~~~~e~~~~~   96 (257)
T 4hg2_A           28 ALFRWLGEVAPARGDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALR---------HPRVTYAVAPAEDTGLP   96 (257)
T ss_dssp             HHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCC---------CTTEEEEECCTTCCCCC
T ss_pred             HHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhh---------cCCceeehhhhhhhccc
Confidence            456777777766789999999999999999975  3599999999999976542         24799999999875432


Q ss_pred             ccCCccEEEECCCCCCc-cHHHHHHHHhcCCCCcEEEEe
Q 044572          367 WLVGSDVLVVDPPRKGL-DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       367 ~~~~~D~vi~DPPR~Gl-~~~v~~~l~~~~~~~~ivyvs  404 (457)
                       .+.||+|++.=--.-. ...+++.+.+...+++++.+.
T Consensus        97 -~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~  134 (257)
T 4hg2_A           97 -PASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAV  134 (257)
T ss_dssp             -SSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -CCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEE
Confidence             3679999873221111 123455555443355555443

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.86  E-value=2e-08  Score=90.44  Aligned_cols=122  Identities=16%  Similarity=0.168  Sum_probs=83.5

Q ss_pred             hCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEE
Q 044572          295 YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVL  374 (457)
Q Consensus       295 ~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~v  374 (457)
                      ++.++.+|||+|||+|.++..++.. + .+|+|+|+++.+++.|++|..        +++++++|+.+.... .+.||+|
T Consensus        43 ~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~~D~~~~~~~~a~~~~~--------~~~~~~~d~~~~~~~-~~~~D~i  111 (195)
T 3cgg_A           43 MAPRGAKILDAGCGQGRIGGYLSKQ-G-HDVLGTDLDPILIDYAKQDFP--------EARWVVGDLSVDQIS-ETDFDLI  111 (195)
T ss_dssp             HSCTTCEEEEETCTTTHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHCT--------TSEEEECCTTTSCCC-CCCEEEE
T ss_pred             hccCCCeEEEECCCCCHHHHHHHHC-C-CcEEEEcCCHHHHHHHHHhCC--------CCcEEEcccccCCCC-CCceeEE
Confidence            3557889999999999999999986 3 499999999999999998752        468999998874321 3579999


Q ss_pred             EECCCCCCc-c----HHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhcccc
Q 044572          375 VVDPPRKGL-D----SSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQI  430 (457)
Q Consensus       375 i~DPPR~Gl-~----~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~  430 (457)
                      +++|+-... .    ..+++.+.+.-.+++.++++....   .......+...+...+-..
T Consensus       112 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~---~~~~~~~~~~~l~~~Gf~~  169 (195)
T 3cgg_A          112 VSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG---RGWVFGDFLEVAERVGLEL  169 (195)
T ss_dssp             EECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT---SSCCHHHHHHHHHHHTEEE
T ss_pred             EECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC---CCcCHHHHHHHHHHcCCEE
Confidence            999763221 1    245555555434666666651111   1123456666666665433

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.86  E-value=1.2e-08  Score=102.25  Aligned_cols=101  Identities=16%  Similarity=0.081  Sum_probs=74.4

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.+++.+++. ++.+|+|||+++ +++.|+++++.+  +..++++++.+|+.+...  .++||+|+.+
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~--~l~~~v~~~~~d~~~~~~--~~~~D~Ivs~  123 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSN--NLTDRIVVIPGKVEEVSL--PEQVDIIISE  123 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHT--TCTTTEEEEESCTTTCCC--SSCEEEEEEC
T ss_pred             CcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHc--CCCCcEEEEEcchhhCCC--CCceeEEEEe
Confidence            6889999999999999999974 667999999996 889999999874  334689999999987532  2579999999


Q ss_pred             CCCCCcc-H---HHHHHHHhcCCCCcEEEEe
Q 044572          378 PPRKGLD-S---SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PPR~Gl~-~---~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++-..+. .   +.+..+.++-.++++++++
T Consensus       124 ~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          124 PMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             CchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            8743221 1   2232333333466666653

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.85  E-value=2.9e-08  Score=94.19  Aligned_cols=108  Identities=10%  Similarity=0.050  Sum_probs=78.5

Q ss_pred             HHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc
Q 044572          289 LRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS  366 (457)
Q Consensus       289 ~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~  366 (457)
                      ...+.+.+.  ++.+|||+|||+|.++..++.. +..+|+|+|+++.+++.|++++.      ..+++++++|+.+... 
T Consensus        33 ~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~-  104 (253)
T 3g5l_A           33 WHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEH-GAKKVLGIDLSERMLTEAKRKTT------SPVVCYEQKAIEDIAI-  104 (253)
T ss_dssp             HHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHCC------CTTEEEEECCGGGCCC-
T ss_pred             HHHHHHhhhccCCCEEEEECCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhhc------cCCeEEEEcchhhCCC-
Confidence            344555554  6889999999999999999985 45599999999999999998864      2578999999976532 


Q ss_pred             ccCCccEEEECCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          367 WLVGSDVLVVDPPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       367 ~~~~~D~vi~DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ..+.||+|++.-.-..+  ...+++.+.+.-.+++.++++
T Consensus       105 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          105 EPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence            13679999986542111  134566665544466776664

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.85  E-value=1.2e-08  Score=95.82  Aligned_cols=109  Identities=14%  Similarity=0.095  Sum_probs=79.7

Q ss_pred             HHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc
Q 044572          287 ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS  366 (457)
Q Consensus       287 ~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~  366 (457)
                      .+++.+.+.+.++.+|||+|||+|.++..++.. + .+|+|||+++.+++.|+++..      ..+++++++|+.+....
T Consensus        42 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~  113 (242)
T 3l8d_A           42 TIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT-G-YKAVGVDISEVMIQKGKERGE------GPDLSFIKGDLSSLPFE  113 (242)
T ss_dssp             THHHHHHHHSCTTCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHTTTC------BTTEEEEECBTTBCSSC
T ss_pred             HHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHc-C-CeEEEEECCHHHHHHHHhhcc------cCCceEEEcchhcCCCC
Confidence            345566666777899999999999999999986 3 489999999999999987742      25799999999875321


Q ss_pred             ccCCccEEEECCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          367 WLVGSDVLVVDPPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       367 ~~~~~D~vi~DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                       .+.||+|++.-.-.-+  ...+++.+.+.-.+++.++++
T Consensus       114 -~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~  152 (242)
T 3l8d_A          114 -NEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIA  152 (242)
T ss_dssp             -TTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -CCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEE
Confidence             3679999885442211  124566665544467777765

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.85  E-value=1.5e-08  Score=96.25  Aligned_cols=116  Identities=13%  Similarity=0.039  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHh---hCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEc
Q 044572          282 TRAFDILLRKLQK---YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA  358 (457)
Q Consensus       282 ~~~~~~l~~~i~~---~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~  358 (457)
                      ....+.+++.+.+   .+.++.+|||+|||+|.++..++..  ..+|+|+|+|+.+++.|++++.    ....+++++.+
T Consensus        20 ~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~~~   93 (263)
T 2yqz_A           20 PEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIA----GVDRKVQVVQA   93 (263)
T ss_dssp             HHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTT----TSCTTEEEEES
T ss_pred             hHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhh----ccCCceEEEEc
Confidence            4556666666643   3456889999999999999999975  3599999999999999999872    23468999999


Q ss_pred             cCCcCcccccCCccEEEECCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          359 DNSIEPLSWLVGSDVLVVDPPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       359 d~~~~~~~~~~~~D~vi~DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+.+... ..+.||+|++.-.-.-+  ...+++.+.+.-.+++.++++
T Consensus        94 d~~~~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A           94 DARAIPL-PDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             CTTSCCS-CTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccCCC-CCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            9976532 13579999985432111  134555555543466666654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.85  E-value=8.7e-09  Score=96.77  Aligned_cols=101  Identities=11%  Similarity=-0.020  Sum_probs=74.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.++..++..  ..+|+|||+++.+++.|++++...  +...+++|+++|+.+...  ...||+|+..
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~--~~~fD~v~~~  139 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGSS--PKAEYFSFVKEDVFTWRP--TELFDLIFDY  139 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHHHTTS--GGGGGEEEECCCTTTCCC--SSCEEEEEEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHhhcc--CCCcceEEEECchhcCCC--CCCeeEEEEC
Confidence            4569999999999999999864  358999999999999999998752  234679999999987542  3479999975


Q ss_pred             CCCCCcc----HHHHHHHHhcCCCCcEEEEe
Q 044572          378 PPRKGLD----SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PPR~Gl~----~~v~~~l~~~~~~~~ivyvs  404 (457)
                      -.-.-+.    ..+++.+.++-.+++.+++.
T Consensus       140 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  170 (235)
T 3lcc_A          140 VFFCAIEPEMRPAWAKSMYELLKPDGELITL  170 (235)
T ss_dssp             SSTTTSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhcCCHHHHHHHHHHHHHHCCCCcEEEEE
Confidence            5432222    34566665543456666553

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.85  E-value=1.4e-08  Score=97.05  Aligned_cols=109  Identities=14%  Similarity=0.043  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572          284 AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE  363 (457)
Q Consensus       284 ~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~  363 (457)
                      ..+.+.+.+...+.++.+|||+|||+|.++..++...  .+|+|||+|+.+++.|++++.        +++++++|+.+.
T Consensus        36 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~d~~~~  105 (263)
T 3pfg_A           36 EAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNP--------DAVLHHGDMRDF  105 (263)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCT--------TSEEEECCTTTC
T ss_pred             HHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC--------CCEEEECChHHC
Confidence            4455566666666677899999999999999999753  489999999999999998742        579999999875


Q ss_pred             cccccCCccEEEECC-CCCCcc-----HHHHHHHHhcCCCCcEEEEe
Q 044572          364 PLSWLVGSDVLVVDP-PRKGLD-----SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       364 ~~~~~~~~D~vi~DP-PR~Gl~-----~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ..  .+.||+|++.. .-.-+.     ..+++.+.+...+++.++++
T Consensus       106 ~~--~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          106 SL--GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             CC--SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             Cc--cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            43  46899999975 321121     13455555544577777775

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.85  E-value=4.2e-09  Score=99.31  Aligned_cols=76  Identities=12%  Similarity=-0.024  Sum_probs=62.4

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi  375 (457)
                      .++.+|||+|||+|.++..++.. +..+|+|||+|+.+++.|+++++.+   . .+++++++|+.+....+ .+.||+|+
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~---~-~~v~~~~~d~~~~~~~~~~~~fD~V~  133 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQ---T-HKVIPLKGLWEDVAPTLPDGHFDGIL  133 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGC---S-SEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhc-CCCeEEEEcCCHHHHHHHHHHHHhc---C-CCeEEEecCHHHhhcccCCCceEEEE
Confidence            46789999999999999999863 4458999999999999999998763   2 57999999997753222 25799999


Q ss_pred             EC
Q 044572          376 VD  377 (457)
Q Consensus       376 ~D  377 (457)
                      +|
T Consensus       134 ~d  135 (236)
T 1zx0_A          134 YD  135 (236)
T ss_dssp             EC
T ss_pred             EC
Confidence            95

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.84  E-value=3e-08  Score=90.63  Aligned_cols=103  Identities=12%  Similarity=-0.068  Sum_probs=75.6

Q ss_pred             hhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccE
Q 044572          294 KYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDV  373 (457)
Q Consensus       294 ~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~  373 (457)
                      ..+.++ +|||+|||+|.++..++.. + .+|+|+|+++.+++.|+++++..+    .+++++++|+.+... ..+.||+
T Consensus        26 ~~~~~~-~vLdiGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~-~~~~fD~   97 (202)
T 2kw5_A           26 NQIPQG-KILCLAEGEGRNACFLASL-G-YEVTAVDQSSVGLAKAKQLAQEKG----VKITTVQSNLADFDI-VADAWEG   97 (202)
T ss_dssp             HHSCSS-EEEECCCSCTHHHHHHHTT-T-CEEEEECSSHHHHHHHHHHHHHHT----CCEEEECCBTTTBSC-CTTTCSE
T ss_pred             HhCCCC-CEEEECCCCCHhHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHhcC----CceEEEEcChhhcCC-CcCCccE
Confidence            335566 9999999999999999975 3 499999999999999999987632    278999999877532 1357999


Q ss_pred             EEECCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          374 LVVDPPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       374 vi~DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |++.-.....  ...+++.+.+.-.+++.++++
T Consensus        98 v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  130 (202)
T 2kw5_A           98 IVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILE  130 (202)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEE
T ss_pred             EEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            9986432211  124556666655577777775

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.84  E-value=6.8e-09  Score=103.84  Aligned_cols=77  Identities=12%  Similarity=0.048  Sum_probs=63.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCC-----CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCcc
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKC-----RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSD  372 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~-----~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D  372 (457)
                      ++.+|||+|||+|.+++.++.....     .+|+|+|+++.+++.|+.|+...+   . ++.++++|+....  ....||
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g---~-~~~i~~~D~l~~~--~~~~fD  203 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR---Q-KMTLLHQDGLANL--LVDPVD  203 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT---C-CCEEEESCTTSCC--CCCCEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC---C-CceEEECCCCCcc--ccCCcc
Confidence            4679999999999999999875321     589999999999999999998632   2 5789999987643  235799


Q ss_pred             EEEECCCC
Q 044572          373 VLVVDPPR  380 (457)
Q Consensus       373 ~vi~DPPR  380 (457)
                      +|+.|||.
T Consensus       204 ~Ii~NPPf  211 (344)
T 2f8l_A          204 VVISDLPV  211 (344)
T ss_dssp             EEEEECCC
T ss_pred             EEEECCCC
Confidence            99999994

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.84  E-value=1.4e-08  Score=95.40  Aligned_cols=110  Identities=12%  Similarity=-0.030  Sum_probs=78.1

Q ss_pred             HHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc
Q 044572          287 ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS  366 (457)
Q Consensus       287 ~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~  366 (457)
                      .+.+.+.....++.+|||+|||+|.++..++...  .+|+|+|+++.+++.|++++...+    .+++++++|+.+... 
T Consensus        26 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~-   98 (246)
T 1y8c_A           26 FIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQG----LKPRLACQDISNLNI-   98 (246)
T ss_dssp             HHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTT----CCCEEECCCGGGCCC-
T ss_pred             HHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCC--CcEEEEECCHHHHHHHHHHHhhcC----CCeEEEecccccCCc-
Confidence            3333333332367899999999999999999863  489999999999999999987632    278999999877543 


Q ss_pred             ccCCccEEEECC-CCCCc-----cHHHHHHHHhcCCCCcEEEEe
Q 044572          367 WLVGSDVLVVDP-PRKGL-----DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       367 ~~~~~D~vi~DP-PR~Gl-----~~~v~~~l~~~~~~~~ivyvs  404 (457)
                       .+.||+|++.. .-.-+     ...+++.+.+.-.+++.++++
T Consensus        99 -~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A           99 -NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             -SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             -cCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence             26799999977 32111     123555555544466666664

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.84  E-value=9e-09  Score=97.42  Aligned_cols=79  Identities=11%  Similarity=-0.041  Sum_probs=65.3

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi  375 (457)
                      .+|.+|||+|||+|.++..+++.. ..+|++||+|+.+++.|+++++..    ..+++++.+|+.+..... ...||.|+
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~-~~~v~~id~~~~~~~~a~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~FD~i~  133 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLPDGHFDGIL  133 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSC-EEEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhC-CcEEEEEeCCHHHHHHHHHHHhhC----CCceEEEeehHHhhcccccccCCceEE
Confidence            478999999999999999998743 468999999999999999998863    247899999987654433 35799999


Q ss_pred             ECCCC
Q 044572          376 VDPPR  380 (457)
Q Consensus       376 ~DPPR  380 (457)
                      .|+.-
T Consensus       134 ~D~~~  138 (236)
T 3orh_A          134 YDTYP  138 (236)
T ss_dssp             ECCCC
T ss_pred             Eeeee
Confidence            99864

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.84  E-value=1e-08  Score=101.34  Aligned_cols=101  Identities=13%  Similarity=0.004  Sum_probs=77.8

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEEECCC
Q 044572          301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVVDPP  379 (457)
Q Consensus       301 ~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~DPP  379 (457)
                      +|||+|||+|.++..+++.....+|++||+++++++.|+++...   ....+++++.+|+.+++... .+.||+||+|..
T Consensus        92 rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~---~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~  168 (317)
T 3gjy_A           92 RITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI---PRAPRVKIRVDDARMVAESFTPASRDVIIRDVF  168 (317)
T ss_dssp             EEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC---CCTTTEEEEESCHHHHHHTCCTTCEEEEEECCS
T ss_pred             EEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc---cCCCceEEEECcHHHHHhhccCCCCCEEEECCC
Confidence            99999999999999999854345899999999999999999764   23468999999998765443 357999999965


Q ss_pred             CC-C-----ccHHHHHHHHhcCCCCcEEEEe
Q 044572          380 RK-G-----LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       380 R~-G-----l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .. +     ...++++.+.+.-.+++++.+.
T Consensus       169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~  199 (317)
T 3gjy_A          169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVAN  199 (317)
T ss_dssp             TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccccchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            32 1     1356777776654577777665

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.83  E-value=1.8e-08  Score=94.26  Aligned_cols=75  Identities=8%  Similarity=-0.078  Sum_probs=61.2

Q ss_pred             hCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccE
Q 044572          295 YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDV  373 (457)
Q Consensus       295 ~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~  373 (457)
                      .+.++.+|||+|||+|.++..++..  ..+|+|||+++.+++.|++|  .      .+++++++|+.+.+... .+.||+
T Consensus        45 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~--~------~~~~~~~~d~~~~~~~~~~~~fD~  114 (226)
T 3m33_A           45 LLTPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN--A------PHADVYEWNGKGELPAGLGAPFGL  114 (226)
T ss_dssp             HCCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH--C------TTSEEEECCSCSSCCTTCCCCEEE
T ss_pred             cCCCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh--C------CCceEEEcchhhccCCcCCCCEEE
Confidence            3457899999999999999999986  34999999999999999987  1      36799999996543322 467999


Q ss_pred             EEECCC
Q 044572          374 LVVDPP  379 (457)
Q Consensus       374 vi~DPP  379 (457)
                      |+.++.
T Consensus       115 v~~~~~  120 (226)
T 3m33_A          115 IVSRRG  120 (226)
T ss_dssp             EEEESC
T ss_pred             EEeCCC
Confidence            999754

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.82  E-value=2.1e-08  Score=96.43  Aligned_cols=104  Identities=17%  Similarity=0.148  Sum_probs=77.5

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.++..++......+|+|||+++.+++.|++++..+   ...+++++.+|+.+.... .+.||+|++
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~~~d~~~~~~~-~~~fD~v~~  111 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN---GIKNVKFLQANIFSLPFE-DSSFDHIFV  111 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCGGGCCSC-TTCEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---CCCCcEEEEcccccCCCC-CCCeeEEEE
Confidence            4688999999999999999998754569999999999999999999873   346899999999875422 367999998


Q ss_pred             CCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .-.-.-+  ...+++.+.++-.+++.+++.
T Consensus       112 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (276)
T 3mgg_A          112 CFVLEHLQSPEEALKSLKKVLKPGGTITVI  141 (276)
T ss_dssp             ESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             echhhhcCCHHHHHHHHHHHcCCCcEEEEE
Confidence            5432111  124666665544466666653

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.82  E-value=1.8e-08  Score=92.82  Aligned_cols=103  Identities=14%  Similarity=0.035  Sum_probs=74.5

Q ss_pred             HHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc
Q 044572          289 LRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL  368 (457)
Q Consensus       289 ~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~  368 (457)
                      +..+...+.++.+|||+|||+|.++..++.. + .+|+|||+++.+++.|++++.         ++++.+|+.+..  ..
T Consensus        34 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~---------~~~~~~d~~~~~--~~  100 (211)
T 3e23_A           34 LTKFLGELPAGAKILELGCGAGYQAEAMLAA-G-FDVDATDGSPELAAEASRRLG---------RPVRTMLFHQLD--AI  100 (211)
T ss_dssp             HHHHHTTSCTTCEEEESSCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHT---------SCCEECCGGGCC--CC
T ss_pred             HHHHHHhcCCCCcEEEECCCCCHHHHHHHHc-C-CeEEEECCCHHHHHHHHHhcC---------CceEEeeeccCC--CC
Confidence            3444445567889999999999999999986 3 499999999999999998862         356788887654  34


Q ss_pred             CCccEEEECCCCCCcc----HHHHHHHHhcCCCCcEEEEe
Q 044572          369 VGSDVLVVDPPRKGLD----SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       369 ~~~D~vi~DPPR~Gl~----~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.||+|++...-.-+.    ..+++.+.+...+++.++++
T Consensus       101 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  140 (211)
T 3e23_A          101 DAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYAS  140 (211)
T ss_dssp             SCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            6899999976532222    13455555443466676665

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.82  E-value=1.4e-08  Score=95.91  Aligned_cols=107  Identities=13%  Similarity=0.099  Sum_probs=75.2

Q ss_pred             HHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc--
Q 044572          290 RKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW--  367 (457)
Q Consensus       290 ~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~--  367 (457)
                      ..+...+.++.+|||+|||+|.++..++....  +|+|||+|+.+++.|++++..      .+++|+++|+.+.....  
T Consensus        48 ~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~~~~~  119 (245)
T 3ggd_A           48 PRFELLFNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTA------ANISYRLLDGLVPEQAAQI  119 (245)
T ss_dssp             HHHTTTSCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCC------TTEEEEECCTTCHHHHHHH
T ss_pred             HHHhhccCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcc------cCceEEECccccccccccc
Confidence            33333445788999999999999999998644  899999999999999988632      47999999998743211  


Q ss_pred             --cCCccEEEECCCCCCcc----HHHHHHHHhcCCCCcEEEEe
Q 044572          368 --LVGSDVLVVDPPRKGLD----SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       368 --~~~~D~vi~DPPR~Gl~----~~v~~~l~~~~~~~~ivyvs  404 (457)
                        ...||+|+++---.-+.    ..+++.+.+...+++.+++.
T Consensus       120 ~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  162 (245)
T 3ggd_A          120 HSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLI  162 (245)
T ss_dssp             HHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEE
T ss_pred             ccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence              12489998875432222    24555555543466655554

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.82  E-value=1.1e-08  Score=94.63  Aligned_cols=104  Identities=16%  Similarity=0.125  Sum_probs=76.2

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .++.+|||+|||+|.++..++... ...+|+|||+++.+++.|+++++..   ...+++++.+|+.+.... .+.||+|+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~~~d~~~~~~~-~~~fD~v~  111 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL---GLKNVEVLKSEENKIPLP-DNTVDFIF  111 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH---TCTTEEEEECBTTBCSSC-SSCEEEEE
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc---CCCcEEEEecccccCCCC-CCCeeEEE
Confidence            468899999999999999999874 2359999999999999999998773   235899999999775321 35799999


Q ss_pred             ECCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          376 VDPPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.-.-..+  ...+++.+.++-.+++.++++
T Consensus       112 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~  142 (219)
T 3dh0_A          112 MAFTFHELSEPLKFLEELKRVAKPFAYLAII  142 (219)
T ss_dssp             EESCGGGCSSHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eehhhhhcCCHHHHHHHHHHHhCCCeEEEEE
Confidence            86542211  134555555543456666654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.81  E-value=1.7e-08  Score=96.69  Aligned_cols=104  Identities=16%  Similarity=0.010  Sum_probs=70.9

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh---------CCC-----CCCCcEEEEEccCCc
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR---------LPK-----SVDGNISWHNADNSI  362 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~---------~~~-----~~~~nv~~~~~d~~~  362 (457)
                      .++.+|||+|||+|.++..||+. |. +|+|||+|+.|++.|+++...         .+.     ....+++|+++|+.+
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~-G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR-GH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT-TC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC-CC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            36789999999999999999985 43 899999999999999876531         000     012579999999988


Q ss_pred             CcccccCCccEEEECCCCCCc----cHHHHHHHHhcCCCCcEEE
Q 044572          363 EPLSWLVGSDVLVVDPPRKGL----DSSLVHALQSIGSAERKAK  402 (457)
Q Consensus       363 ~~~~~~~~~D~vi~DPPR~Gl----~~~v~~~l~~~~~~~~ivy  402 (457)
                      ......+.||+|+..---.-+    ...+++.+.++-.+++.++
T Consensus       145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~  188 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYL  188 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEE
T ss_pred             CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEE
Confidence            643322689999853221111    1235566655434555554

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.80  E-value=3.2e-08  Score=96.19  Aligned_cols=104  Identities=14%  Similarity=0.018  Sum_probs=75.4

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.++..+++..+ .+|+|||+++.+++.|+++++..  +...+++++.+|+.+.... .+.||+|++
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~-~~~fD~v~~  156 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQA--GLADNITVKYGSFLEIPCE-DNSYDFIWS  156 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHH--TCTTTEEEEECCTTSCSSC-TTCEEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEEcCcccCCCC-CCCEeEEEe
Confidence            4688999999999999999998634 38999999999999999998763  3346899999999875321 357999987


Q ss_pred             CCCC--CCccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPR--KGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR--~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .-.-  ..-...+++.+.+.-.+++.++++
T Consensus       157 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  186 (297)
T 2o57_A          157 QDAFLHSPDKLKVFQECARVLKPRGVMAIT  186 (297)
T ss_dssp             ESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cchhhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence            5331  111234566665543466666554

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.80  E-value=8.4e-09  Score=106.91  Aligned_cols=123  Identities=14%  Similarity=0.105  Sum_probs=85.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhC-------------CCCEEEEEeCCHHHHHHHHHH
Q 044572          275 SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAAR-------------KCRSVKCVEINKESQLSFEKT  341 (457)
Q Consensus       275 ~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~-------------~~~~V~gVE~~~~av~~A~~N  341 (457)
                      +.||. .+...+.|++.+.  ...+.+|||.+||+|.|.+.+++..             ...+++|+|+++.+++.|+.|
T Consensus       151 G~fyT-P~~v~~~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~n  227 (445)
T 2okc_A          151 GQYFT-PRPLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMN  227 (445)
T ss_dssp             GGGCC-CHHHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred             CcccC-cHHHHHHHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHH
Confidence            44554 4555555555432  1357899999999999999988642             124799999999999999999


Q ss_pred             HhhCCCCCC-CcEEEEEccCCcCcccccCCccEEEECCCCCCccH-------------------H-HHHHHHhcCCCCcE
Q 044572          342 VSRLPKSVD-GNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDS-------------------S-LVHALQSIGSAERK  400 (457)
Q Consensus       342 a~~~~~~~~-~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~-------------------~-v~~~l~~~~~~~~i  400 (457)
                      +...+  .. .++.++++|+.....  ...||+|+.|||..+...                   . +.+.+..+++.+++
T Consensus       228 l~l~g--~~~~~~~i~~gD~l~~~~--~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~  303 (445)
T 2okc_A          228 LYLHG--IGTDRSPIVCEDSLEKEP--STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRA  303 (445)
T ss_dssp             HHHTT--CCSSCCSEEECCTTTSCC--SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred             HHHhC--CCcCCCCEeeCCCCCCcc--cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEE
Confidence            98732  21 167789999876432  247999999999765321                   2 34444556656777


Q ss_pred             EEEe
Q 044572          401 AKSL  404 (457)
Q Consensus       401 vyvs  404 (457)
                      ++|.
T Consensus       304 a~V~  307 (445)
T 2okc_A          304 AVVL  307 (445)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7776

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.79  E-value=2e-08  Score=94.24  Aligned_cols=107  Identities=11%  Similarity=0.108  Sum_probs=76.5

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc
Q 044572          286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL  365 (457)
Q Consensus       286 ~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~  365 (457)
                      +.+++.+.... ++.+|||+|||+|.++..++...  .+|+|||+|+.+++.|++++..       +++++++|+.+.. 
T Consensus        31 ~~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~-------~v~~~~~d~~~~~-   99 (250)
T 2p7i_A           31 PFMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKD-------GITYIHSRFEDAQ-   99 (250)
T ss_dssp             HHHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCS-------CEEEEESCGGGCC-
T ss_pred             HHHHHHHHhhc-CCCcEEEECCCCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhhhC-------CeEEEEccHHHcC-
Confidence            44445544443 57899999999999999999753  3899999999999999987531       6899999998763 


Q ss_pred             cccCCccEEEECCCCCC--ccHHHHHHHH-hcCCCCcEEEEe
Q 044572          366 SWLVGSDVLVVDPPRKG--LDSSLVHALQ-SIGSAERKAKSL  404 (457)
Q Consensus       366 ~~~~~~D~vi~DPPR~G--l~~~v~~~l~-~~~~~~~ivyvs  404 (457)
                       ..+.||+|++.=--.-  -...+++.+. +.-.+++.++++
T Consensus       100 -~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~  140 (250)
T 2p7i_A          100 -LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV  140 (250)
T ss_dssp             -CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             -cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEE
Confidence             2367999987321000  0135777777 654577777775

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.79  E-value=1.5e-08  Score=95.99  Aligned_cols=108  Identities=9%  Similarity=-0.082  Sum_probs=75.2

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhh----CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572          286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAA----RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS  361 (457)
Q Consensus       286 ~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~----~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~  361 (457)
                      +.++..++... ++.+|||+|||+|.+++.+|+.    ....+|+|||+++++++.|+   ..     ..+++++++|+.
T Consensus        70 ~~~l~~~l~~~-~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~---~~-----~~~v~~~~gD~~  140 (236)
T 2bm8_A           70 QAVYHDMLWEL-RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA---SD-----MENITLHQGDCS  140 (236)
T ss_dssp             HHHHHHHHHHH-CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG---GG-----CTTEEEEECCSS
T ss_pred             HHHHHHHHHhc-CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh---cc-----CCceEEEECcch
Confidence            33344444433 4689999999999999999986    23469999999999998876   11     257999999998


Q ss_pred             cC--cccccC-CccEEEECCCCCCccHHHHHHHH--hcCCCCcEEEEe
Q 044572          362 IE--PLSWLV-GSDVLVVDPPRKGLDSSLVHALQ--SIGSAERKAKSL  404 (457)
Q Consensus       362 ~~--~~~~~~-~~D~vi~DPPR~Gl~~~v~~~l~--~~~~~~~ivyvs  404 (457)
                      +.  +..... .||+|++|-..... ..++..+.  .++ +++++.++
T Consensus       141 ~~~~l~~~~~~~fD~I~~d~~~~~~-~~~l~~~~r~~Lk-pGG~lv~~  186 (236)
T 2bm8_A          141 DLTTFEHLREMAHPLIFIDNAHANT-FNIMKWAVDHLLE-EGDYFIIE  186 (236)
T ss_dssp             CSGGGGGGSSSCSSEEEEESSCSSH-HHHHHHHHHHTCC-TTCEEEEC
T ss_pred             hHHHHHhhccCCCCEEEECCchHhH-HHHHHHHHHhhCC-CCCEEEEE
Confidence            75  222223 69999998874322 34555554  455 66666664

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.78  E-value=3.6e-09  Score=102.13  Aligned_cols=129  Identities=10%  Similarity=0.065  Sum_probs=88.0

Q ss_pred             HHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc
Q 044572          287 ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS  366 (457)
Q Consensus       287 ~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~  366 (457)
                      .+++.+..+  .+..+||+|+|||.+++.+.+  ++.+++.||.++++++..++|++.     ..++++++.|+...+..
T Consensus        82 ~yf~~l~~~--n~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~-----~~~~~V~~~D~~~~L~~  152 (283)
T 2oo3_A           82 EYISVIKQI--NLNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHF-----NKKVYVNHTDGVSKLNA  152 (283)
T ss_dssp             HHHHHHHHH--SSSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCT-----TSCEEEECSCHHHHHHH
T ss_pred             HHHHHHHHh--cCCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCc-----CCcEEEEeCcHHHHHHH
Confidence            455555553  356789999999999999986  358999999999999999999864     35799999998776543


Q ss_pred             cc---CCccEEEECCCCC--CccHHHHHHHHhc--CCCCcEEEEeccCCCCCchhchhhHHHHHHHhc
Q 044572          367 WL---VGSDVLVVDPPRK--GLDSSLVHALQSI--GSAERKAKSLSESSSSMVKEEKRPWILRAKEAS  427 (457)
Q Consensus       367 ~~---~~~D~vi~DPPR~--Gl~~~v~~~l~~~--~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~  427 (457)
                      ..   .+||+|++|||+.  +.-..+++.+.+.  ..+.+++.+=   +-+......+.|.+.+.+..
T Consensus       153 l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~W---YPi~~~~~~~~~~~~l~~~~  217 (283)
T 2oo3_A          153 LLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVW---YPVVNKAWTEQFLRKMREIS  217 (283)
T ss_dssp             HCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEE---EEESSHHHHHHHHHHHHHHC
T ss_pred             hcCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEE---EeccchHHHHHHHHHHHhcC
Confidence            32   3699999999986  4555666666542  1234443331   00333344555666554443

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.78  E-value=9.3e-09  Score=98.59  Aligned_cols=101  Identities=8%  Similarity=0.114  Sum_probs=72.4

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCE--EEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044572          280 ANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRS--VKCVEINKESQLSFEKTVSRLPKSVDGNISWHN  357 (457)
Q Consensus       280 ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~--V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~  357 (457)
                      .+....+.+++.+.  +.++++|||+|||+|.++. ++. .  .+  |+|||+|+++++.+++|.+.     ..|+++++
T Consensus         5 ~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~~-~--~~~~v~avEid~~~~~~a~~~~~~-----~~~v~~i~   73 (252)
T 1qyr_A            5 NDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTE-PVG-E--RLDQLTVIELDRDLAARLQTHPFL-----GPKLTIYQ   73 (252)
T ss_dssp             CCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHH-HHH-T--TCSCEEEECCCHHHHHHHHTCTTT-----GGGEEEEC
T ss_pred             CCHHHHHHHHHhcC--CCCcCEEEEECCCCcHHHH-hhh-C--CCCeEEEEECCHHHHHHHHHHhcc-----CCceEEEE
Confidence            35555555555432  2467899999999999999 764 3  36  99999999999999987653     14799999


Q ss_pred             ccCCcCcc-cc---cCCccEEEECCCCCCccHHHHHHH
Q 044572          358 ADNSIEPL-SW---LVGSDVLVVDPPRKGLDSSLVHAL  391 (457)
Q Consensus       358 ~d~~~~~~-~~---~~~~D~vi~DPPR~Gl~~~v~~~l  391 (457)
                      +|+.+... ..   ....++||.|+|+.--++-+.+.+
T Consensus        74 ~D~~~~~~~~~~~~~~~~~~vvsNlPY~i~~~il~~ll  111 (252)
T 1qyr_A           74 QDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLF  111 (252)
T ss_dssp             SCGGGCCHHHHHHHHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred             CchhhCCHHHhhcccCCceEEEECCCCCccHHHHHHHH
Confidence            99987532 11   124579999999975444344444

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.77  E-value=2e-08  Score=97.27  Aligned_cols=107  Identities=15%  Similarity=-0.019  Sum_probs=77.4

Q ss_pred             hCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEE
Q 044572          295 YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVL  374 (457)
Q Consensus       295 ~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~v  374 (457)
                      ++.++.+|||+|||+|.++..++.. +..+|+|||+++.+++.|++++...  +...+++++++|+.+......+.||+|
T Consensus        61 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~fD~v  137 (298)
T 1ri5_A           61 YTKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNM--KRRFKVFFRAQDSYGRHMDLGKEFDVI  137 (298)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTS--CCSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred             hCCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhc--CCCccEEEEECCccccccCCCCCcCEE
Confidence            3457899999999999999998875 4569999999999999999998863  233579999999987532123579999


Q ss_pred             EECCCCC----Cc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          375 VVDPPRK----GL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       375 i~DPPR~----Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +++-.-.    ..  ...+++.+.+.-.+++.++++
T Consensus       138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  173 (298)
T 1ri5_A          138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  173 (298)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            9874321    11  123455555544466666665

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.77  E-value=3.4e-08  Score=95.82  Aligned_cols=102  Identities=12%  Similarity=0.088  Sum_probs=75.8

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .++.+|||+|||+|.+++.++...+ ..+|+|+|+|+.+++.|+++++..+    .|++|+++|+.+...  .+.||+|+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~~~~~--~~~fD~v~   94 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP----YDSEFLEGDATEIEL--NDKYDIAI   94 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS----SEEEEEESCTTTCCC--SSCEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC----CceEEEEcchhhcCc--CCCeeEEE
Confidence            3688999999999999999997643 3699999999999999999987632    389999999987543  35899999


Q ss_pred             ECCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          376 VDPPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.-.-.-+  ...+++.+.+.-.+++.+++.
T Consensus        95 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  125 (284)
T 3gu3_A           95 CHAFLLHMTTPETMLQKMIHSVKKGGKIICF  125 (284)
T ss_dssp             EESCGGGCSSHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ECChhhcCCCHHHHHHHHHHHcCCCCEEEEE
Confidence            86542111  134555555543466666653

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.77  E-value=4.3e-08  Score=94.07  Aligned_cols=106  Identities=11%  Similarity=0.035  Sum_probs=76.6

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHH------HHHHHHHHHhhCCCCCCCcEEEEEcc-CCcCcccc-
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKE------SQLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSW-  367 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~------av~~A~~Na~~~~~~~~~nv~~~~~d-~~~~~~~~-  367 (457)
                      .++.+|||+|||+|.+++.++...+. .+|+|||+|+.      +++.|+++++..  +..++++++.+| .......+ 
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~  119 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG--PLGDRLTVHFNTNLSDDLGPIA  119 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS--TTGGGEEEECSCCTTTCCGGGT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhc--CCCCceEEEECChhhhccCCCC
Confidence            47889999999999999999986432 59999999997      999999998763  233689999998 32211111 


Q ss_pred             cCCccEEEECCCCC--CccHHHHHHHHhcCCCCcEEEEe
Q 044572          368 LVGSDVLVVDPPRK--GLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       368 ~~~~D~vi~DPPR~--Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .+.||+|++...-.  .-...+.+.+..+.++++.+++.
T Consensus       120 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~  158 (275)
T 3bkx_A          120 DQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVA  158 (275)
T ss_dssp             TCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEE
T ss_pred             CCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEE
Confidence            35799999976621  11234677777777656666664

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.77  E-value=2.8e-08  Score=94.03  Aligned_cols=100  Identities=14%  Similarity=-0.037  Sum_probs=73.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.++..++... ..+|+|||+++.+++.|++++..   .  .+++++++|+.+... ..+.||+|++.
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~---~--~~~~~~~~d~~~~~~-~~~~fD~v~~~  165 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG---M--PVGKFILASMETATL-PPNTYDLIVIQ  165 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT---S--SEEEEEESCGGGCCC-CSSCEEEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhcc---C--CceEEEEccHHHCCC-CCCCeEEEEEc
Confidence            57899999999999999998754 56899999999999999998764   1  579999999877432 13579999986


Q ss_pred             CCCCCcc----HHHHHHHHhcCCCCcEEEEe
Q 044572          378 PPRKGLD----SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PPR~Gl~----~~v~~~l~~~~~~~~ivyvs  404 (457)
                      -.-.-+.    ..+++.+.+...+++.++++
T Consensus       166 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~  196 (254)
T 1xtp_A          166 WTAIYLTDADFVKFFKHCQQALTPNGYIFFK  196 (254)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            5422221    23455554443466666665

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.76  E-value=1.5e-08  Score=107.53  Aligned_cols=125  Identities=11%  Similarity=0.041  Sum_probs=85.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC------------------CCEEEEEeCCHHHH
Q 044572          274 PSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK------------------CRSVKCVEINKESQ  335 (457)
Q Consensus       274 ~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~------------------~~~V~gVE~~~~av  335 (457)
                      .+.||.. +...+.|++.+..  .++.+|+|.+||+|.|.+.++....                  ...++|+|+++.++
T Consensus       148 ~G~fyTP-~~iv~~mv~~l~p--~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~  224 (541)
T 2ar0_A          148 AGQYFTP-RPLIKTIIHLLKP--QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR  224 (541)
T ss_dssp             --CCCCC-HHHHHHHHHHHCC--CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred             CCeeeCC-HHHHHHHHHHhcc--CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHH
Confidence            4667764 4555555544321  3578999999999999998886421                  13799999999999


Q ss_pred             HHHHHHHhhCCCCCCCc-----EEEEEccCCcCcccccCCccEEEECCCCCCccH----------------HH-HHHHHh
Q 044572          336 LSFEKTVSRLPKSVDGN-----ISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDS----------------SL-VHALQS  393 (457)
Q Consensus       336 ~~A~~Na~~~~~~~~~n-----v~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~----------------~v-~~~l~~  393 (457)
                      +.|+.|+...   +..+     +.++++|...........||+||.|||+.+...                .+ .+.+..
T Consensus       225 ~lA~~nl~l~---gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~  301 (541)
T 2ar0_A          225 RLALMNCLLH---DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIET  301 (541)
T ss_dssp             HHHHHHHHTT---TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh---CCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHH
Confidence            9999998763   2333     778999986532222357999999999765421                23 334555


Q ss_pred             cCCCCcEEEEe
Q 044572          394 IGSAERKAKSL  404 (457)
Q Consensus       394 ~~~~~~ivyvs  404 (457)
                      +++.+++++|.
T Consensus       302 Lk~gGr~a~V~  312 (541)
T 2ar0_A          302 LHPGGRAAVVV  312 (541)
T ss_dssp             EEEEEEEEEEE
T ss_pred             hCCCCEEEEEe
Confidence            66567788875

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.76  E-value=7.7e-09  Score=96.00  Aligned_cols=106  Identities=16%  Similarity=0.088  Sum_probs=73.6

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhC-CCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL-PKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~-~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .++.+|||+|||+|.+++.++......+|+|||+|+.+++.+.++++.. ......|++|+++|+.+.... ... |.|+
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~-~~~-d~v~  103 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPL-SGV-GELH  103 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSC-CCE-EEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCC-CCC-CEEE
Confidence            4688999999999999999998754569999999999888644444321 012346899999999875321 233 7777


Q ss_pred             ECCCCCCcc-------HHHHHHHHhcCCCCcEEEEe
Q 044572          376 VDPPRKGLD-------SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~Gl~-------~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +..+.....       ..+++.+.+.-.+++.++++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A          104 VLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             EESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             EEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence            666543321       34566665554577777775

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.76  E-value=1.9e-08  Score=98.20  Aligned_cols=103  Identities=18%  Similarity=0.184  Sum_probs=73.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      .+.+|||+|||+|.++..++.. + .+|+|||+++.+++.|++++...+.....+++++++|+.+...  .+.||+|++.
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~  157 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDL-G-WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL--DKRFGTVVIS  157 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTT-T-CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC--SCCEEEEEEC
T ss_pred             CCCcEEEEeccCCHHHHHHHHc-C-CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc--CCCcCEEEEC
Confidence            4559999999999999999976 3 4899999999999999999876310011579999999987543  4689988863


Q ss_pred             CC-CCCcc----HHHHHHHHhcCCCCcEEEEe
Q 044572          378 PP-RKGLD----SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PP-R~Gl~----~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .. ..-++    ..+++.+.+.-.+++.++++
T Consensus       158 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  189 (299)
T 3g2m_A          158 SGSINELDEADRRGLYASVREHLEPGGKFLLS  189 (299)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcccccCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            11 11111    24555555543466777665

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.76  E-value=7e-08  Score=91.30  Aligned_cols=99  Identities=14%  Similarity=0.001  Sum_probs=71.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.+++.++.. + .+|+|||+|+.+++.|++|++..+    .+++++++|+.+...  ...||+|++.
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~--~~~fD~v~~~  112 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAER-G-YEVVGLDLHEEMLRVARRKAKERN----LKIEFLQGDVLEIAF--KNEFDAVTMF  112 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHTT----CCCEEEESCGGGCCC--CSCEEEEEEC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHHhcC----CceEEEECChhhccc--CCCccEEEEc
Confidence            5789999999999999999985 3 489999999999999999988632    268999999987532  3579999974


Q ss_pred             CC---CCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          378 PP---RKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PP---R~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      -.   ....  ...+++.+.+.-.++++++++
T Consensus       113 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          113 FSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             SSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            32   1111  123444444433466666654

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.75  E-value=3.9e-08  Score=90.52  Aligned_cols=116  Identities=15%  Similarity=0.054  Sum_probs=78.3

Q ss_pred             CCCCCCHHHH--HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcE
Q 044572          276 SFGQANTRAF--DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNI  353 (457)
Q Consensus       276 ~FfQ~n~~~~--~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv  353 (457)
                      .+++.+....  +...+.+..++.++.+|||+|||+|.++..+    +..+|+|+|+++.+++.|++++        .++
T Consensus        12 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~--------~~~   79 (211)
T 2gs9_A           12 AWYGTPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA--------PEA   79 (211)
T ss_dssp             GGGGSHHHHHHHHHHHHHHHTTCCCCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC--------TTS
T ss_pred             HHhcccchhhhHHHHHHHHHHhcCCCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC--------CCc
Confidence            3455443333  3333444455557889999999999999877    3458999999999999999875        256


Q ss_pred             EEEEccCCcCcccccCCccEEEECCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          354 SWHNADNSIEPLSWLVGSDVLVVDPPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       354 ~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +++++|+.+... ..+.||+|++.-.-.-+  ...+++.+.+.-.+++.++++
T Consensus        80 ~~~~~d~~~~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~  131 (211)
T 2gs9_A           80 TWVRAWGEALPF-PGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVG  131 (211)
T ss_dssp             EEECCCTTSCCS-CSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEcccccCCC-CCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence            899999876532 13579999987543222  234565555544466666665

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.74  E-value=3.2e-08  Score=94.05  Aligned_cols=108  Identities=12%  Similarity=0.052  Sum_probs=76.6

Q ss_pred             HHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc
Q 044572          290 RKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW  367 (457)
Q Consensus       290 ~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~  367 (457)
                      ..+.+.+  .++.+|||+|||+|.++..++... ..+|+|||+|+.+++.|++++..   .  .+++++++|+.+.... 
T Consensus        45 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~---~--~~~~~~~~d~~~~~~~-  117 (266)
T 3ujc_A           45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSG---N--NKIIFEANDILTKEFP-  117 (266)
T ss_dssp             HHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCS---C--TTEEEEECCTTTCCCC-
T ss_pred             HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhc---C--CCeEEEECccccCCCC-
Confidence            4444443  367899999999999999999863 34999999999999999988654   1  6899999999875321 


Q ss_pred             cCCccEEEECCCCCCc----cHHHHHHHHhcCCCCcEEEEe
Q 044572          368 LVGSDVLVVDPPRKGL----DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       368 ~~~~D~vi~DPPR~Gl----~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .+.||+|+..-.-.-+    ...+++.+.+.-.+++.++++
T Consensus       118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~  158 (266)
T 3ujc_A          118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLIT  158 (266)
T ss_dssp             TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEE
Confidence            3679999986442222    123455554443466666664

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.73  E-value=6.4e-08  Score=105.38  Aligned_cols=120  Identities=10%  Similarity=-0.032  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCC---CCCCcEEEE
Q 044572          283 RAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPK---SVDGNISWH  356 (457)
Q Consensus       283 ~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~---~~~~nv~~~  356 (457)
                      ...+..++.+.+.+.  ++.+|||+|||+|.+++.+++.. ...+|+|||+++.|++.|+++++...+   ++..+++|+
T Consensus       704 PL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefi  783 (950)
T 3htx_A          704 PLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLY  783 (950)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEE
T ss_pred             hHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEE
Confidence            344444555555443  68899999999999999999764 125999999999999999986653211   234689999


Q ss_pred             EccCCcCcccccCCccEEEECCCCCCccH----HHHHHHHhcCCCCcEEEEe
Q 044572          357 NADNSIEPLSWLVGSDVLVVDPPRKGLDS----SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       357 ~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~----~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++|+.+.... .+.||+|++.---.-+..    .+++.+.+.-.++ +++++
T Consensus       784 qGDa~dLp~~-d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIIS  833 (950)
T 3htx_A          784 DGSILEFDSR-LHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVS  833 (950)
T ss_dssp             ESCTTSCCTT-SCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEE
T ss_pred             ECchHhCCcc-cCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEE
Confidence            9999875432 367999998433221222    2445555544467 66665

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.73  E-value=6.3e-08  Score=88.69  Aligned_cols=81  Identities=19%  Similarity=0.156  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhh--CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572          284 AFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS  361 (457)
Q Consensus       284 ~~~~l~~~i~~~--~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~  361 (457)
                      .+-+|++...++  +.++.+|||||||+|.+++.+|+.  ..+|+|||+++.+              ...+++++++|+.
T Consensus         9 a~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~--------------~~~~v~~~~~D~~   72 (191)
T 3dou_A            9 AAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME--------------EIAGVRFIRCDIF   72 (191)
T ss_dssp             HHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC--------------CCTTCEEEECCTT
T ss_pred             HHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc--------------cCCCeEEEEcccc
Confidence            344555555444  457899999999999999999986  4599999999741              1247899999998


Q ss_pred             cCccc------cc----CCccEEEECCCC
Q 044572          362 IEPLS------WL----VGSDVLVVDPPR  380 (457)
Q Consensus       362 ~~~~~------~~----~~~D~vi~DPPR  380 (457)
                      +....      ..    +.||+|+.|++-
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~  101 (191)
T 3dou_A           73 KETIFDDIDRALREEGIEKVDDVVSDAMA  101 (191)
T ss_dssp             SSSHHHHHHHHHHHHTCSSEEEEEECCCC
T ss_pred             CHHHHHHHHHHhhcccCCcceEEecCCCc
Confidence            74211      11    489999999863

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.73  E-value=3.2e-08  Score=99.42  Aligned_cols=87  Identities=18%  Similarity=0.140  Sum_probs=69.7

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC---CCCcEEEEEccCCcCcccccCCcc
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS---VDGNISWHNADNSIEPLSWLVGSD  372 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~---~~~nv~~~~~d~~~~~~~~~~~~D  372 (457)
                      ..+|++|||+|||.|+=++++|.....+.|+++|+++.-++..++|+++++..   ...++.+...|+..+.....+.||
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD  225 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD  225 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence            35799999999999999999998655568999999999999999999874321   125788999998664332346799


Q ss_pred             EEEECCCCCC
Q 044572          373 VLVVDPPRKG  382 (457)
Q Consensus       373 ~vi~DPPR~G  382 (457)
                      .|++|+|-+|
T Consensus       226 ~VLlDaPCSg  235 (359)
T 4fzv_A          226 RVLVDVPCTT  235 (359)
T ss_dssp             EEEEECCCCC
T ss_pred             EEEECCccCC
Confidence            9999999765

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.72  E-value=8.5e-08  Score=87.67  Aligned_cols=95  Identities=12%  Similarity=-0.054  Sum_probs=70.7

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECC
Q 044572          299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDP  378 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DP  378 (457)
                      +.+|||+|||+|.++..++.. + .+|+|||+++.+++.|+++.        .+++++++|+.+... ..+.||+|++.-
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~-~-~~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~~~~fD~v~~~~  110 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL-G-HQIEGLEPATRLVELARQTH--------PSVTFHHGTITDLSD-SPKRWAGLLAWY  110 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT-T-CCEEEECCCHHHHHHHHHHC--------TTSEEECCCGGGGGG-SCCCEEEEEEES
T ss_pred             CCeEEEecCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC--------CCCeEEeCccccccc-CCCCeEEEEehh
Confidence            789999999999999999986 3 38999999999999999872        357999999977432 136799999855


Q ss_pred             CCCCc----cHHHHHHHHhcCCCCcEEEEe
Q 044572          379 PRKGL----DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       379 PR~Gl----~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .-.-+    ...+++.+.+.-.+++.++++
T Consensus       111 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~  140 (203)
T 3h2b_A          111 SLIHMGPGELPDALVALRMAVEDGGGLLMS  140 (203)
T ss_dssp             SSTTCCTTTHHHHHHHHHHTEEEEEEEEEE
T ss_pred             hHhcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            32111    134566665544467777765

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.72  E-value=1.4e-09  Score=103.57  Aligned_cols=86  Identities=12%  Similarity=0.088  Sum_probs=67.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.++..++...  .+|+|||+|+.+++.|++|++.     ..+++++++|+.+......+.| .||.|
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~~~~~~~~f-~vv~n  100 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQFQFPNKQRY-KIVGN  100 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTTTTCCCSSEE-EEEEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhcc-----CCceEEEECChhhcCcccCCCc-EEEEe
Confidence            67899999999999999999864  5999999999999999887652     2589999999987542211357 89999


Q ss_pred             CCCCCccHHHHHHHH
Q 044572          378 PPRKGLDSSLVHALQ  392 (457)
Q Consensus       378 PPR~Gl~~~v~~~l~  392 (457)
                      ||+...+. ++..+.
T Consensus       101 ~Py~~~~~-~~~~~~  114 (245)
T 1yub_A          101 IPYHLSTQ-IIKKVV  114 (245)
T ss_dssp             CCSSSCHH-HHHHHH
T ss_pred             CCccccHH-HHHHHH
Confidence            99876544 333333

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.72  E-value=3e-08  Score=96.78  Aligned_cols=106  Identities=15%  Similarity=0.118  Sum_probs=73.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC-----------------------------
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS-----------------------------  348 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~-----------------------------  348 (457)
                      ++.+|||+|||+|.+++.+|...+..+|+|||+++.+++.|++|++.....                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            578999999999999999998766679999999999999999987653100                             


Q ss_pred             --------------------------CCCcEEEEEccCCcCccc----ccCCccEEEECCCCC---------CccHHHHH
Q 044572          349 --------------------------VDGNISWHNADNSIEPLS----WLVGSDVLVVDPPRK---------GLDSSLVH  389 (457)
Q Consensus       349 --------------------------~~~nv~~~~~d~~~~~~~----~~~~~D~vi~DPPR~---------Gl~~~v~~  389 (457)
                                                ...|++|+++|+......    ....||+|++.---.         ++ ..+++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~-~~~l~  204 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGL-KRMFR  204 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHH-HHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHH-HHHHH
Confidence                                      014899999998754311    136799999854310         11 12444


Q ss_pred             HHHhcCCCCcEEEEe
Q 044572          390 ALQSIGSAERKAKSL  404 (457)
Q Consensus       390 ~l~~~~~~~~ivyvs  404 (457)
                      .+.++-.++++++++
T Consensus       205 ~~~~~LkpGG~lil~  219 (292)
T 3g07_A          205 RIYRHLRPGGILVLE  219 (292)
T ss_dssp             HHHHHEEEEEEEEEE
T ss_pred             HHHHHhCCCcEEEEe
Confidence            444443477777775

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.71  E-value=6.8e-08  Score=88.94  Aligned_cols=106  Identities=12%  Similarity=0.025  Sum_probs=74.0

Q ss_pred             HHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc
Q 044572          287 ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS  366 (457)
Q Consensus       287 ~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~  366 (457)
                      .+++.+.. +.++.+|||+|||+|.++..++...  .+|+|+|+++.+++.|++   .    ...+++++++|+.+..  
T Consensus        36 ~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~---~----~~~~~~~~~~d~~~~~--  103 (218)
T 3ou2_A           36 AALERLRA-GNIRGDVLELASGTGYWTRHLSGLA--DRVTALDGSAEMIAEAGR---H----GLDNVEFRQQDLFDWT--  103 (218)
T ss_dssp             HHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHGG---G----CCTTEEEEECCTTSCC--
T ss_pred             HHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHh---c----CCCCeEEEecccccCC--
Confidence            34444333 3467899999999999999999873  499999999999999987   2    1257999999998762  


Q ss_pred             ccCCccEEEECCCCCCcc----HHHHHHHHhcCCCCcEEEEe
Q 044572          367 WLVGSDVLVVDPPRKGLD----SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       367 ~~~~~D~vi~DPPR~Gl~----~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ..+.||+|++.---.-+.    ..+++.+.+.-.+++.++++
T Consensus       104 ~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~  145 (218)
T 3ou2_A          104 PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFV  145 (218)
T ss_dssp             CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            246899999864321122    23455555443456665554

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.71  E-value=1.3e-08  Score=104.18  Aligned_cols=91  Identities=15%  Similarity=0.059  Sum_probs=65.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcE
Q 044572          275 SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNI  353 (457)
Q Consensus       275 ~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv  353 (457)
                      +.||. ....++.|++.+..  .++.+|||+|||+|.+++.++++. ...+|+|||+++.+++.|            .++
T Consensus        19 g~~~T-P~~l~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------------~~~   83 (421)
T 2ih2_A           19 GRVET-PPEVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWA   83 (421)
T ss_dssp             --CCC-CHHHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTE
T ss_pred             ceEeC-CHHHHHHHHHhhcc--CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------------CCC
Confidence            34444 35555555443321  246799999999999999999753 346999999999998655            357


Q ss_pred             EEEEccCCcCcccccCCccEEEECCCCCC
Q 044572          354 SWHNADNSIEPLSWLVGSDVLVVDPPRKG  382 (457)
Q Consensus       354 ~~~~~d~~~~~~~~~~~~D~vi~DPPR~G  382 (457)
                      +++++|+.+...  ...||+||.|||+..
T Consensus        84 ~~~~~D~~~~~~--~~~fD~Ii~NPPy~~  110 (421)
T 2ih2_A           84 EGILADFLLWEP--GEAFDLILGNPPYGI  110 (421)
T ss_dssp             EEEESCGGGCCC--SSCEEEEEECCCCCC
T ss_pred             cEEeCChhhcCc--cCCCCEEEECcCccC
Confidence            899999876532  257999999999754

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.71  E-value=4.5e-08  Score=99.33  Aligned_cols=107  Identities=13%  Similarity=-0.003  Sum_probs=76.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhC-----CCCCCCcEEEEEccCCcCcc----cc
Q 044572          298 YGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRL-----PKSVDGNISWHNADNSIEPL----SW  367 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~-----~~~~~~nv~~~~~d~~~~~~----~~  367 (457)
                      ++.+|||+|||+|.+++.++... ...+|+|||+++.+++.|++|++.+     +.....+++|+++|+.+...    .+
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            68899999999999999999863 2359999999999999999998652     10112589999999987421    11


Q ss_pred             -cCCccEEEECCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          368 -LVGSDVLVVDPPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       368 -~~~~D~vi~DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                       .+.||+|+.+-.-.-+  ...+++.+.+.-.+++.++++
T Consensus       163 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~  202 (383)
T 4fsd_A          163 PDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFS  202 (383)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEE
Confidence             2579999987652211  234556555544467776664

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.70  E-value=6.9e-08  Score=90.55  Aligned_cols=99  Identities=13%  Similarity=-0.003  Sum_probs=72.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.++..++.. +..+|+|||+++.+++.|+++...      .+++++++|+.+... ..+.||+|++.
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~-~~~~fD~v~~~  114 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD------TGITYERADLDKLHL-PQDSFDLAYSS  114 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS------SSEEEEECCGGGCCC-CTTCEEEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc------CCceEEEcChhhccC-CCCCceEEEEe
Confidence            6789999999999999999975 455999999999999999987543      368999999877532 13579999987


Q ss_pred             CCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          378 PPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ..-.-+  ...+++.+.+.-.+++.++++
T Consensus       115 ~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  143 (243)
T 3bkw_A          115 LALHYVEDVARLFRTVHQALSPGGHFVFS  143 (243)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccchHHHHHHHHHHhcCcCcEEEEE
Confidence            652211  134555555543466666664

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.68  E-value=5.4e-08  Score=92.31  Aligned_cols=97  Identities=11%  Similarity=0.003  Sum_probs=72.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.++..++......+|+|+|+++.+++.|+++.        .+++++.+|+.+..  ....||+|++.
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~--------~~~~~~~~d~~~~~--~~~~fD~v~~~  102 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL--------PNTNFGKADLATWK--PAQKADLLYAN  102 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS--------TTSEEEECCTTTCC--CSSCEEEEEEE
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--------CCcEEEECChhhcC--ccCCcCEEEEe
Confidence            678999999999999999998643458999999999999999871        36799999998754  24679999986


Q ss_pred             CCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          378 PPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      -.-.-+  ...+++.+.+.-.+++.++++
T Consensus       103 ~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  131 (259)
T 2p35_A          103 AVFQWVPDHLAVLSQLMDQLESGGVLAVQ  131 (259)
T ss_dssp             SCGGGSTTHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CchhhCCCHHHHHHHHHHhcCCCeEEEEE
Confidence            542211  134556565544466666665

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.68  E-value=6.4e-08  Score=88.72  Aligned_cols=113  Identities=12%  Similarity=-0.012  Sum_probs=75.4

Q ss_pred             HHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572          285 FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP  364 (457)
Q Consensus       285 ~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~  364 (457)
                      ...+++.+.. ..++.+|||+|||+|.+++.++...+ .+|+|||+|+.+++.|+++++..+    .+++++++|+.+..
T Consensus        11 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~   84 (209)
T 2p8j_A           11 LYRFLKYCNE-SNLDKTVLDCGAGGDLPPLSIFVEDG-YKTYGIEISDLQLKKAENFSRENN----FKLNISKGDIRKLP   84 (209)
T ss_dssp             HHHHHHHHHH-SSSCSEEEEESCCSSSCTHHHHHHTT-CEEEEEECCHHHHHHHHHHHHHHT----CCCCEEECCTTSCC
T ss_pred             HHHHHHHHhc-cCCCCEEEEECCCCCHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcC----CceEEEECchhhCC
Confidence            3344444443 34688999999999998554443333 489999999999999999987632    46889999998743


Q ss_pred             ccccCCccEEEECCCCCCcc----HHHHHHHHhcCCCCcEEEEe
Q 044572          365 LSWLVGSDVLVVDPPRKGLD----SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       365 ~~~~~~~D~vi~DPPR~Gl~----~~v~~~l~~~~~~~~ivyvs  404 (457)
                      . ..+.||+|++.-.-..+.    ..+++.+.+.-.+++.++++
T Consensus        85 ~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  127 (209)
T 2p8j_A           85 F-KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACIN  127 (209)
T ss_dssp             S-CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             C-CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            2 135799999864422221    23444444433466666665

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.68  E-value=6.9e-08  Score=90.32  Aligned_cols=108  Identities=11%  Similarity=-0.016  Sum_probs=76.1

Q ss_pred             HHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572          285 FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP  364 (457)
Q Consensus       285 ~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~  364 (457)
                      .+.+.+.+.+...++.+|||+|||+|.++..++....  +|+|+|+|+.+++.|+++.        .+++++++|+.+..
T Consensus        27 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~--------~~~~~~~~d~~~~~   96 (239)
T 3bxo_A           27 ASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL--------PDATLHQGDMRDFR   96 (239)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC--------TTCEEEECCTTTCC
T ss_pred             HHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC--------CCCEEEECCHHHcc
Confidence            3445555555556788999999999999999998643  9999999999999998763        25789999998753


Q ss_pred             ccccCCccEEEECC-C--CC---CccHHHHHHHHhcCCCCcEEEEe
Q 044572          365 LSWLVGSDVLVVDP-P--RK---GLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       365 ~~~~~~~D~vi~DP-P--R~---Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .  ...||+|++.- .  ..   .-...+++.+.+.-.+++.++++
T Consensus        97 ~--~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (239)
T 3bxo_A           97 L--GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVE  140 (239)
T ss_dssp             C--SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             c--CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            2  46799999421 1  00   00123455555544467777775

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.68  E-value=4.3e-08  Score=104.74  Aligned_cols=76  Identities=14%  Similarity=0.054  Sum_probs=62.1

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEE
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVL  374 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~v  374 (457)
                      +..+-+|||+|||.|.++..||+. | .+|+|||.++.+|+.|+..+...   +..+++|.++++++..... .+.||+|
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~-g-a~V~giD~~~~~i~~a~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~fD~v  138 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASK-G-ATIVGIDFQQENINVCRALAEEN---PDFAAEFRVGRIEEVIAALEEGEFDLA  138 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHTS---TTSEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhC-C-CEEEEECCCHHHHHHHHHHHHhc---CCCceEEEECCHHHHhhhccCCCccEE
Confidence            345679999999999999999986 3 38999999999999999998763   2347999999998764332 3579999


Q ss_pred             EE
Q 044572          375 VV  376 (457)
Q Consensus       375 i~  376 (457)
                      +.
T Consensus       139 ~~  140 (569)
T 4azs_A          139 IG  140 (569)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.67  E-value=4.4e-08  Score=93.47  Aligned_cols=89  Identities=17%  Similarity=0.119  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572          284 AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE  363 (457)
Q Consensus       284 ~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~  363 (457)
                      ..+.+|..+.+.+....+|||||||+|.|++.++...+..+|+|+|+|+.+++.+++|+..++    .+.++...|....
T Consensus       118 ~lD~fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g----~~~~~~v~D~~~~  193 (281)
T 3lcv_B          118 HLDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLN----VPHRTNVADLLED  193 (281)
T ss_dssp             GHHHHHHHHGGGSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTT----CCEEEEECCTTTS
T ss_pred             hHHHHHHHHHhccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcC----CCceEEEeeeccc
Confidence            346678888887766789999999999999999876667899999999999999999998843    2478888887654


Q ss_pred             cccccCCccEEEECC
Q 044572          364 PLSWLVGSDVLVVDP  378 (457)
Q Consensus       364 ~~~~~~~~D~vi~DP  378 (457)
                      ..  ...+|++++.=
T Consensus       194 ~p--~~~~DvaL~lk  206 (281)
T 3lcv_B          194 RL--DEPADVTLLLK  206 (281)
T ss_dssp             CC--CSCCSEEEETT
T ss_pred             CC--CCCcchHHHHH
Confidence            32  35799998754

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.67  E-value=1.3e-07  Score=92.97  Aligned_cols=107  Identities=14%  Similarity=0.020  Sum_probs=74.4

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC----CCCCcEEEEEccCCcCc----cc-c
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK----SVDGNISWHNADNSIEP----LS-W  367 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~----~~~~nv~~~~~d~~~~~----~~-~  367 (457)
                      .++.+|||+|||+|.++..++.. +..+|+|+|+++.+++.|+++....+.    ....+++++++|+.+..    .. .
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  111 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP  111 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred             CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence            36789999999999999999873 456999999999999999998764210    02357999999998753    11 1


Q ss_pred             cCCccEEEECCCCCCc--c----HHHHHHHHhcCCCCcEEEEe
Q 044572          368 LVGSDVLVVDPPRKGL--D----SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       368 ~~~~D~vi~DPPR~Gl--~----~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .+.||+|++.-.-.-+  +    ..+++.+.+.-.++++++++
T Consensus       112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (313)
T 3bgv_A          112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGT  154 (313)
T ss_dssp             TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            2479999985432111  1    24555555544467777775

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.67  E-value=1.1e-07  Score=100.74  Aligned_cols=105  Identities=18%  Similarity=0.098  Sum_probs=79.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhC---CCCEEEEEeCCHHHHHHHHHHHhhCCCC
Q 044572          274 PSSFGQANTRAFDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAAR---KCRSVKCVEINKESQLSFEKTVSRLPKS  348 (457)
Q Consensus       274 ~~~FfQ~n~~~~~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~---~~~~V~gVE~~~~av~~A~~Na~~~~~~  348 (457)
                      .+.||. .+...+.|++.+....  ..+.+|+|.+||||+|.+.++...   +..+++|+|+++.+++.|+.|+...+  
T Consensus       196 ~G~fyT-P~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g--  272 (542)
T 3lkd_A          196 AGEFYT-PQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHG--  272 (542)
T ss_dssp             CSSCCC-CHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT--
T ss_pred             CCeecc-cHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcC--
Confidence            356665 4677777777665322  257899999999999999888752   24589999999999999999987732  


Q ss_pred             CC-CcEEEEEccCCcC--cccccCCccEEEECCCCC
Q 044572          349 VD-GNISWHNADNSIE--PLSWLVGSDVLVVDPPRK  381 (457)
Q Consensus       349 ~~-~nv~~~~~d~~~~--~~~~~~~~D~vi~DPPR~  381 (457)
                      .. +++.+.++|....  .......||+||.|||+.
T Consensus       273 i~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~  308 (542)
T 3lkd_A          273 VPIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYS  308 (542)
T ss_dssp             CCGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTT
T ss_pred             CCcCccceEecceecccccccccccccEEEecCCcC
Confidence            21 4788999998754  222235799999999964

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.66  E-value=1.2e-07  Score=83.58  Aligned_cols=112  Identities=11%  Similarity=0.005  Sum_probs=75.4

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc-----cc-c-
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP-----LS-W-  367 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~-----~~-~-  367 (457)
                      +.++.+|||+|||+|.++..+++..+ ..+|+|+|+++ +++.             .+++++++|+.+..     .. . 
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-------------~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-------------VGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-------------TTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-------------CcEEEEEcccccchhhhhhhccCC
Confidence            34788999999999999999998632 36999999999 6421             46899999997642     00 1 


Q ss_pred             cCCccEEEECCCCCC--cc-----------HHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHh
Q 044572          368 LVGSDVLVVDPPRKG--LD-----------SSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEA  426 (457)
Q Consensus       368 ~~~~D~vi~DPPR~G--l~-----------~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~  426 (457)
                      .+.||+|++|+|...  ..           ..+++.+.++-.+++.++++     .........+.......
T Consensus        86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~-----~~~~~~~~~~~~~~~~~  152 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK-----VFQGEGFDEYLREIRSL  152 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-----EESSTTHHHHHHHHHHH
T ss_pred             CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEE-----EecCCcHHHHHHHHHHh
Confidence            257999999998543  22           34555555543466666665     33333444555555543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.64  E-value=2.9e-08  Score=95.36  Aligned_cols=105  Identities=11%  Similarity=0.119  Sum_probs=70.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCC--------------------------CC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV--------------------------DG  351 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~--------------------------~~  351 (457)
                      ++.+|||+|||+|.+++.++. .++.+|+|+|+|+.|++.|+++++......                          ..
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~-~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAAC-DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGG-GTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHH-hhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            578999999999998887775 356689999999999999999876521010                          01


Q ss_pred             cEE-EEEccCCcCcc-c--ccCCccEEEEC------CC-CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          352 NIS-WHNADNSIEPL-S--WLVGSDVLVVD------PP-RKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       352 nv~-~~~~d~~~~~~-~--~~~~~D~vi~D------PP-R~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++. ++++|+.+... .  ....||+|+..      +| .... ..+++.+.++-++++.+.++
T Consensus       134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~-~~~l~~i~r~LKPGG~li~~  196 (263)
T 2a14_A          134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAY-RAALCNLASLLKPGGHLVTT  196 (263)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHH-HHHHHHHHTTEEEEEEEEEE
T ss_pred             hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHH-HHHHHHHHHHcCCCcEEEEE
Confidence            344 88999887321 1  13579999884      22 1111 13455555544567766665

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.63  E-value=4.8e-08  Score=93.47  Aligned_cols=96  Identities=17%  Similarity=0.075  Sum_probs=67.8

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.++..++..  ..+|+|||+|+.+++.|+++         .|++|+.+|+.+... ..+.||+|++
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~---------~~~~~~~~d~~~~~~-~~~~fD~v~~  100 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQ--GLFVYAVEPSIVMRQQAVVH---------PQVEWFTGYAENLAL-PDKSVDGVIS  100 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTT--TCEEEEECSCHHHHHSSCCC---------TTEEEECCCTTSCCS-CTTCBSEEEE
T ss_pred             CCCCEEEEEcCcccHHHHHHHhC--CCEEEEEeCCHHHHHHHHhc---------cCCEEEECchhhCCC-CCCCEeEEEE
Confidence            46889999999999999999974  35999999999998766532         178999999987532 1367999988


Q ss_pred             CCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .-.-.-+  ...+++.+.+.-..+.++.++
T Consensus       101 ~~~l~~~~~~~~~l~~~~~~LkgG~~~~~~  130 (261)
T 3ege_A          101 ILAIHHFSHLEKSFQEMQRIIRDGTIVLLT  130 (261)
T ss_dssp             ESCGGGCSSHHHHHHHHHHHBCSSCEEEEE
T ss_pred             cchHhhccCHHHHHHHHHHHhCCcEEEEEE
Confidence            6542111  124555555443445566665

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.62  E-value=1.2e-07  Score=90.51  Aligned_cols=106  Identities=15%  Similarity=0.061  Sum_probs=74.9

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc
Q 044572          286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL  365 (457)
Q Consensus       286 ~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~  365 (457)
                      +.+.+.+.+++.++.+|||+|||+|.++..++.. + .+|+|||+|+.+++.|+++..       .+  ++++|+.+...
T Consensus        42 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~gvD~s~~~l~~a~~~~~-------~~--~~~~d~~~~~~  110 (260)
T 2avn_A           42 RLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQER-G-FEVVLVDPSKEMLEVAREKGV-------KN--VVEAKAEDLPF  110 (260)
T ss_dssp             HHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTT-T-CEEEEEESCHHHHHHHHHHTC-------SC--EEECCTTSCCS
T ss_pred             HHHHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHc-C-CeEEEEeCCHHHHHHHHhhcC-------CC--EEECcHHHCCC
Confidence            4444555555557889999999999999999975 3 489999999999999998743       12  78899876532


Q ss_pred             cccCCccEEEECCCC----CCccHHHHHHHHhcCCCCcEEEEe
Q 044572          366 SWLVGSDVLVVDPPR----KGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       366 ~~~~~~D~vi~DPPR----~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                       ..+.||+|++...-    .. ...+++.+.+.-.+++.++++
T Consensus       111 -~~~~fD~v~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~  151 (260)
T 2avn_A          111 -PSGAFEAVLALGDVLSYVEN-KDKAFSEIRRVLVPDGLLIAT  151 (260)
T ss_dssp             -CTTCEEEEEECSSHHHHCSC-HHHHHHHHHHHEEEEEEEEEE
T ss_pred             -CCCCEEEEEEcchhhhcccc-HHHHHHHHHHHcCCCeEEEEE
Confidence             13579999986431    11 234566665544466666665

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.61  E-value=1.7e-07  Score=101.87  Aligned_cols=106  Identities=14%  Similarity=0.060  Sum_probs=72.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhC----CCCCeEEEEcccccHHHHHHHhhCC---CCEEEEEeCCHHHHHHH--HHHHhhC
Q 044572          275 SSFGQANTRAFDILLRKLQKYV----PYGASVTDLYAGAGVIGLSLAAARK---CRSVKCVEINKESQLSF--EKTVSRL  345 (457)
Q Consensus       275 ~~FfQ~n~~~~~~l~~~i~~~~----~~~~~vLDl~cG~G~~sl~lA~~~~---~~~V~gVE~~~~av~~A--~~Na~~~  345 (457)
                      +.|| ..+..+..|++.+...+    .++.+|||.+||+|+|.+.++...+   ..+++|+|+++.+++.|  +.|+..+
T Consensus       295 GqFY-TP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN  373 (878)
T 3s1s_A          295 GVVP-TDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFP  373 (878)
T ss_dssp             BSSS-CCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTST
T ss_pred             ceEc-CCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHh
Confidence            4455 45777777777632222    2578999999999999999997542   24799999999999999  7787642


Q ss_pred             CC-CCCCcEEEEEccCCcCcccccCCccEEEECCCCC
Q 044572          346 PK-SVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK  381 (457)
Q Consensus       346 ~~-~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~  381 (457)
                      .. .+..+..+...|...........||+||.|||+.
T Consensus       374 ~LlhGi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg  410 (878)
T 3s1s_A          374 QLVSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYV  410 (878)
T ss_dssp             TTCBTTBCCEEECCCGGGCCGGGGTTEEEEEECCBCC
T ss_pred             hhhcCCCcceEEecchhcccccccCCCCEEEECCCcc
Confidence            11 1222334555555442122236799999999984

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.61  E-value=2.7e-07  Score=83.71  Aligned_cols=122  Identities=17%  Similarity=0.060  Sum_probs=75.3

Q ss_pred             HHHHHHHHh--hCCCCCeEEEEcccccHHHHHHHhhCCC---------CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEE
Q 044572          286 DILLRKLQK--YVPYGASVTDLYAGAGVIGLSLAAARKC---------RSVKCVEINKESQLSFEKTVSRLPKSVDGNIS  354 (457)
Q Consensus       286 ~~l~~~i~~--~~~~~~~vLDl~cG~G~~sl~lA~~~~~---------~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~  354 (457)
                      .+|++....  .+.++.+|||+|||+|.+++.+++..+.         .+|+|||+++.+              ...+++
T Consensus         8 ~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------------~~~~~~   73 (196)
T 2nyu_A            8 FKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------------PLEGAT   73 (196)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------------CCTTCE
T ss_pred             HHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------------cCCCCe
Confidence            344444333  2457899999999999999999987543         689999999832              124678


Q ss_pred             EE-EccCCcCccc------c-cCCccEEEECCCC--CCcc-----------HHHHHHHHhcCCCCcEEEEeccCCCCCch
Q 044572          355 WH-NADNSIEPLS------W-LVGSDVLVVDPPR--KGLD-----------SSLVHALQSIGSAERKAKSLSESSSSMVK  413 (457)
Q Consensus       355 ~~-~~d~~~~~~~------~-~~~~D~vi~DPPR--~Gl~-----------~~v~~~l~~~~~~~~ivyvs~~~~~c~~~  413 (457)
                      ++ .+|+......      . ...||+|+.|.+-  .|..           ..+++.+.++-.+++.+++.     ....
T Consensus        74 ~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~-----~~~~  148 (196)
T 2nyu_A           74 FLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCK-----TWAG  148 (196)
T ss_dssp             EECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-----ECCS
T ss_pred             EEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEE-----ecCC
Confidence            89 8987653210      1 1479999999842  2322           13344444332355555554     2323


Q ss_pred             hchhhHHHHHHHh
Q 044572          414 EEKRPWILRAKEA  426 (457)
Q Consensus       414 ~~~~~~~~~~~~~  426 (457)
                      .....+...+...
T Consensus       149 ~~~~~~~~~l~~~  161 (196)
T 2nyu_A          149 SQSRRLQRRLTEE  161 (196)
T ss_dssp             GGGHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHH
Confidence            3345565555544

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.61  E-value=8.1e-08  Score=90.44  Aligned_cols=96  Identities=16%  Similarity=-0.074  Sum_probs=67.3

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEE
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVL  374 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~v  374 (457)
                      +.++.+|||+|||+|.++..++.. + .+|+|||+|+.+++.|+++           ++++.+|+.+.+..+ .+.||+|
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~gvD~s~~~~~~a~~~-----------~~~~~~d~~~~~~~~~~~~fD~i  105 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE-G-IESIGVDINEDMIKFCEGK-----------FNVVKSDAIEYLKSLPDKYLDGV  105 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH-T-CCEEEECSCHHHHHHHHTT-----------SEEECSCHHHHHHTSCTTCBSEE
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC-C-CcEEEEECCHHHHHHHHhh-----------cceeeccHHHHhhhcCCCCeeEE
Confidence            346789999999999999999986 3 3799999999999988754           478888887643222 3679999


Q ss_pred             EECCCCCCcc----HHHHHHHHhcCCCCcEEEEe
Q 044572          375 VVDPPRKGLD----SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       375 i~DPPR~Gl~----~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++.---.-+.    ..+++.+.+.-.+++.++++
T Consensus       106 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (240)
T 3dli_A          106 MISHFVEHLDPERLFELLSLCYSKMKYSSYIVIE  139 (240)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEE
T ss_pred             EECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEE
Confidence            9843211111    34566665544466666655

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.59  E-value=4.1e-07  Score=82.94  Aligned_cols=79  Identities=11%  Similarity=0.089  Sum_probs=57.6

Q ss_pred             HHHHHHHhh--CCCCCeEEEEcccccHHHHHHHhhCC--CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572          287 ILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARK--CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI  362 (457)
Q Consensus       287 ~l~~~i~~~--~~~~~~vLDl~cG~G~~sl~lA~~~~--~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~  362 (457)
                      +|++....+  +.++.+|||+|||+|.+++.++...+  ..+|+|||+++.+         .     ..+++++++|+.+
T Consensus         9 kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~-----~~~v~~~~~d~~~   74 (201)
T 2plw_A            9 KLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------P-----IPNVYFIQGEIGK   74 (201)
T ss_dssp             HHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------C-----CTTCEEEECCTTT
T ss_pred             HHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------C-----CCCceEEEccccc
Confidence            444443332  45788999999999999999998754  3689999999831         1     2468999999876


Q ss_pred             Ccc-----------------------cc-cCCccEEEECCC
Q 044572          363 EPL-----------------------SW-LVGSDVLVVDPP  379 (457)
Q Consensus       363 ~~~-----------------------~~-~~~~D~vi~DPP  379 (457)
                      ...                       .+ ...||+|+.|+.
T Consensus        75 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~  115 (201)
T 2plw_A           75 DNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAA  115 (201)
T ss_dssp             TSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             hhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCC
Confidence            530                       01 247999999975

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.59  E-value=7.4e-08  Score=93.37  Aligned_cols=105  Identities=14%  Similarity=-0.044  Sum_probs=73.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC-CCCcEEEEEccCCcCccc--ccCCccEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS-VDGNISWHNADNSIEPLS--WLVGSDVL  374 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~-~~~nv~~~~~d~~~~~~~--~~~~~D~v  374 (457)
                      ++.+|||+|||+|.+++.++.. ++ +|+|||+|+.+++.|++|+...... ...++.+..+|+.+....  ..+.||+|
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V  134 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEE-GF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV  134 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHC-CC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEE
Confidence            5789999999999999999986 33 9999999999999999987542111 124688999998764311  13579999


Q ss_pred             EECC-CCC---C------ccHHHHHHHHhcCCCCcEEEEe
Q 044572          375 VVDP-PRK---G------LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       375 i~DP-PR~---G------l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++.. --.   .      ....+++.+.++..+++.++++
T Consensus       135 ~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  174 (293)
T 3thr_A          135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  174 (293)
T ss_dssp             EECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            9862 110   0      0234566665544467777765

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.59  E-value=3e-07  Score=84.91  Aligned_cols=96  Identities=15%  Similarity=-0.010  Sum_probs=68.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC---cccccCCccEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE---PLSWLVGSDVL  374 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~---~~~~~~~~D~v  374 (457)
                      .+.+|||+|||+|.++..++.. + .+|+|+|+++.+++.|+++         .++.++.+|+.+.   .......||+|
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~~~~~~fD~v  120 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADR-G-IEAVGVDGDRTLVDAARAA---------GAGEVHLASYAQLAEAKVPVGKDYDLI  120 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTT-T-CEEEEEESCHHHHHHHHHT---------CSSCEEECCHHHHHTTCSCCCCCEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC-C-CEEEEEcCCHHHHHHHHHh---------cccccchhhHHhhcccccccCCCccEE
Confidence            5789999999999999999976 3 4899999999999999876         1346788887654   11112459999


Q ss_pred             EECCCCC-CccHHHHHHHHhcCCCCcEEEEe
Q 044572          375 VVDPPRK-GLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       375 i~DPPR~-Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++...-. .-...+++.+.+...+++.++++
T Consensus       121 ~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~  151 (227)
T 3e8s_A          121 CANFALLHQDIIELLSAMRTLLVPGGALVIQ  151 (227)
T ss_dssp             EEESCCCSSCCHHHHHHHHHTEEEEEEEEEE
T ss_pred             EECchhhhhhHHHHHHHHHHHhCCCeEEEEE
Confidence            9865532 11134666666554577777775

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.58  E-value=2.2e-07  Score=89.56  Aligned_cols=96  Identities=10%  Similarity=0.020  Sum_probs=70.6

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.++..++..  ..+|+|+|+|+.+++.|+++.        .+++++.+|+.+...  .+.||+|++
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~--~~~fD~v~~  123 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQS--GAEVLGTDNAATMIEKARQNY--------PHLHFDVADARNFRV--DKPLDAVFS  123 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC--------TTSCEEECCTTTCCC--SSCEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHhhC--------CCCEEEECChhhCCc--CCCcCEEEE
Confidence            36789999999999999999974  359999999999999998764        357899999987542  467999998


Q ss_pred             CCCCCC--ccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKG--LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~G--l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .-.-.-  -...+++.+.+.-.+++.++++
T Consensus       124 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  153 (279)
T 3ccf_A          124 NAMLHWVKEPEAAIASIHQALKSGGRFVAE  153 (279)
T ss_dssp             ESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cchhhhCcCHHHHHHHHHHhcCCCcEEEEE
Confidence            654211  1124555555543466666665

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.57  E-value=3e-07  Score=86.81  Aligned_cols=83  Identities=14%  Similarity=0.065  Sum_probs=67.0

Q ss_pred             HHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572          285 FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP  364 (457)
Q Consensus       285 ~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~  364 (457)
                      .+.+|..+.++ ....+|||+|||+|.|++.+.   +..+++|+|+|+.+++.+++|+..++    .+.++..+|.....
T Consensus        93 ld~fY~~i~~~-~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g----~~~~~~v~D~~~~~  164 (253)
T 3frh_A           93 LDTLYDFIFSA-ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKD----WDFTFALQDVLCAP  164 (253)
T ss_dssp             HHHHHHHHTSS-CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTT----CEEEEEECCTTTSC
T ss_pred             HHHHHHHHhcC-CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcC----CCceEEEeecccCC
Confidence            34566666666 567899999999999999987   35699999999999999999998732    57789999987654


Q ss_pred             ccccCCccEEEEC
Q 044572          365 LSWLVGSDVLVVD  377 (457)
Q Consensus       365 ~~~~~~~D~vi~D  377 (457)
                      .  ...+|+|++.
T Consensus       165 ~--~~~~DvvLll  175 (253)
T 3frh_A          165 P--AEAGDLALIF  175 (253)
T ss_dssp             C--CCBCSEEEEE
T ss_pred             C--CCCcchHHHH
Confidence            3  3579999775

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.56  E-value=1.4e-07  Score=90.88  Aligned_cols=99  Identities=9%  Similarity=-0.018  Sum_probs=74.5

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC-CCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK-SVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~-~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      ....+|||+|||+|.++..+++. + .+|++||+++++++.|++++..... ....+++++.+|+.+++    +.||+||
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----~~fD~Ii  144 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----KKYDLIF  144 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----CCEEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----hhCCEEE
Confidence            35689999999999999999986 6 8999999999999999987532100 01357999999998764    6799999


Q ss_pred             ECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          376 VDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|.+-.   ..+.+.+.+.-.+++++.+.
T Consensus       145 ~d~~dp---~~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          145 CLQEPD---IHRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             ESSCCC---HHHHHHHHTTEEEEEEEEEE
T ss_pred             ECCCCh---HHHHHHHHHhcCCCcEEEEE
Confidence            997532   23566665544467776664

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.53  E-value=2.7e-07  Score=88.28  Aligned_cols=107  Identities=12%  Similarity=0.066  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhhC-CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572          284 AFDILLRKLQKYV-PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI  362 (457)
Q Consensus       284 ~~~~l~~~i~~~~-~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~  362 (457)
                      ..+.+.+.+...+ .++.+|||+|||+|.++..++...+..+|+|+|+++.+++.|+++.        .++.++.+|+.+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~  141 (269)
T 1p91_A           70 LRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY--------PQVTFCVASSHR  141 (269)
T ss_dssp             HHHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC--------TTSEEEECCTTS
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC--------CCcEEEEcchhh
Confidence            3445555555554 4688999999999999999998643358999999999999998763        246899999876


Q ss_pred             CcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          363 EPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       363 ~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ... ..+.||+|+.......    +.+..+.++ +++.+++.
T Consensus       142 ~~~-~~~~fD~v~~~~~~~~----l~~~~~~L~-pgG~l~~~  177 (269)
T 1p91_A          142 LPF-SDTSMDAIIRIYAPCK----AEELARVVK-PGGWVITA  177 (269)
T ss_dssp             CSB-CTTCEEEEEEESCCCC----HHHHHHHEE-EEEEEEEE
T ss_pred             CCC-CCCceeEEEEeCChhh----HHHHHHhcC-CCcEEEEE
Confidence            432 1357999887544221    233333455 55555554

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=98.53  E-value=1.1e-07  Score=96.44  Aligned_cols=93  Identities=18%  Similarity=0.177  Sum_probs=69.7

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-------cCCcc
Q 044572          300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-------LVGSD  372 (457)
Q Consensus       300 ~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-------~~~~D  372 (457)
                      -+++|||||+|.+++.+.. +|+..|.+||+++.|++..+.|..        +..++++|+.+.....       ...+|
T Consensus         3 ~~vidLFsG~GGlslG~~~-aG~~~v~avE~d~~a~~t~~~N~~--------~~~~~~~DI~~~~~~~~~~~~~~~~~~D   73 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAAR-AGFDVKMAVEIDQHAINTHAINFP--------RSLHVQEDVSLLNAEIIKGFFKNDMPID   73 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHH-HTCEEEEEECSCHHHHHHHHHHCT--------TSEEECCCGGGCCHHHHHHHHCSCCCCC
T ss_pred             CeEEEEccCcCHHHHHHHH-CCCcEEEEEeCCHHHHHHHHHhCC--------CCceEecChhhcCHHHHHhhcccCCCee
Confidence            4799999999999999887 467789999999999999988843        3467889998764321       24699


Q ss_pred             EEEECCCCCC---------------ccHHHHHHHHhcCCCCcEEE
Q 044572          373 VLVVDPPRKG---------------LDSSLVHALQSIGSAERKAK  402 (457)
Q Consensus       373 ~vi~DPPR~G---------------l~~~v~~~l~~~~~~~~ivy  402 (457)
                      +|+.+||-.+               |-.++++.+..++ |+-+++
T Consensus        74 ~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~-P~~~v~  117 (376)
T 3g7u_A           74 GIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQ-PLFFLA  117 (376)
T ss_dssp             EEEECCCCCTTC-------CHHHHHHHHHHHHHHHHHC-CSEEEE
T ss_pred             EEEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhC-CCEEEE
Confidence            9999999322               2234566777775 555555

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.52  E-value=1.9e-07  Score=82.84  Aligned_cols=94  Identities=10%  Similarity=0.081  Sum_probs=68.0

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.++..++...  .+|+|+|+++.+++.|+++  .      .+++++.+| ...   ..+.||+|++
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~--~------~~v~~~~~d-~~~---~~~~~D~v~~   81 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK--F------DSVITLSDP-KEI---PDNSVDFILF   81 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH--C------TTSEEESSG-GGS---CTTCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh--C------CCcEEEeCC-CCC---CCCceEEEEE
Confidence            467899999999999999999754  3999999999999999987  1      368999998 221   2357999998


Q ss_pred             CCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .-.-.-+  ...+++.+.+.-.+++.+++.
T Consensus        82 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  111 (170)
T 3i9f_A           82 ANSFHDMDDKQHVISEVKRILKDDGRVIII  111 (170)
T ss_dssp             ESCSTTCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccchhcccCHHHHHHHHHHhcCCCCEEEEE
Confidence            7653322  124555555443355655554

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=98.52  E-value=1.3e-07  Score=94.66  Aligned_cols=71  Identities=17%  Similarity=0.278  Sum_probs=57.5

Q ss_pred             CeEEEEcccccHHHHHHHhhCC--CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccC--CccEEE
Q 044572          300 ASVTDLYAGAGVIGLSLAAARK--CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLV--GSDVLV  375 (457)
Q Consensus       300 ~~vLDl~cG~G~~sl~lA~~~~--~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~--~~D~vi  375 (457)
                      .+|+|||||+|++++.+... |  ++.|+++|+++.|++..+.|...        ..++++|+.+.......  .+|+|+
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~-G~~~~~v~~~E~d~~a~~~~~~N~~~--------~~~~~~Di~~~~~~~~~~~~~D~l~   73 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFPH--------TQLLAKTIEGITLEEFDRLSFDMIL   73 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCTT--------SCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred             CeEEEeCcCccHHHHHHHHC-CCCceEEEEEeCCHHHHHHHHHhccc--------cccccCCHHHccHhHcCcCCcCEEE
Confidence            47999999999999999874 4  46899999999999999998642        24678998876432221  689999


Q ss_pred             ECCC
Q 044572          376 VDPP  379 (457)
Q Consensus       376 ~DPP  379 (457)
                      .+||
T Consensus        74 ~gpP   77 (343)
T 1g55_A           74 MSPP   77 (343)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            9999

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.52  E-value=4e-07  Score=88.22  Aligned_cols=128  Identities=14%  Similarity=0.089  Sum_probs=83.7

Q ss_pred             ECCCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccH----HHHHHHhhCC----CCEEEEEeCCHHHHHHHHHHHh
Q 044572          272 LAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGV----IGLSLAAARK----CRSVKCVEINKESQLSFEKTVS  343 (457)
Q Consensus       272 i~~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~----~sl~lA~~~~----~~~V~gVE~~~~av~~A~~Na~  343 (457)
                      +..+.||. ++...+.+.+.++.. .+..+|||+|||||.    +++.++...+    ..+|+|+|+|++|++.|++++-
T Consensus        81 ~~~t~FfR-d~~~f~~l~~~llp~-~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y  158 (274)
T 1af7_A           81 TNLTAFFR-EAHHFPILAEHARRR-HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIY  158 (274)
T ss_dssp             CCCCCTTT-TTTHHHHHHHHHHHS-CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEE
T ss_pred             hcCccccC-ChHHHHHHHHHccCC-CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCC
Confidence            34578887 455666666555433 235689999999998    7777776422    1389999999999999999851


Q ss_pred             h-------------------CCC-CC--------CCcEEEEEccCCcCcccccCCccEEEECCCCCCc---c----HHHH
Q 044572          344 R-------------------LPK-SV--------DGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGL---D----SSLV  388 (457)
Q Consensus       344 ~-------------------~~~-~~--------~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl---~----~~v~  388 (457)
                      .                   ... ++        ..+|+|.++|+.+......+.||+|++   |.-+   +    ..++
T Consensus       159 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~c---rnvliyf~~~~~~~vl  235 (274)
T 1af7_A          159 RLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFC---RNVMIYFDKTTQEDIL  235 (274)
T ss_dssp             EGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEE---CSSGGGSCHHHHHHHH
T ss_pred             chhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEE---CCchHhCCHHHHHHHH
Confidence            0                   000 00        136999999998732111357999998   4332   1    2455


Q ss_pred             HHHHhcCCCCcEEEEe
Q 044572          389 HALQSIGSAERKAKSL  404 (457)
Q Consensus       389 ~~l~~~~~~~~ivyvs  404 (457)
                      +.+...-.+++++++.
T Consensus       236 ~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          236 RRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             HHHGGGEEEEEEEEEC
T ss_pred             HHHHHHhCCCcEEEEE
Confidence            5555544578888885

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.48  E-value=2e-07  Score=88.54  Aligned_cols=106  Identities=12%  Similarity=0.057  Sum_probs=71.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCC--------------------------CC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV--------------------------DG  351 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~--------------------------~~  351 (457)
                      ++.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|+++++..+...                          ..
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACE-SFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHhhc-ccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            5789999999999999999874 34589999999999999999886521000                          01


Q ss_pred             cE-EEEEccCCcCccccc---CCccEEEECCCCC----C--ccHHHHHHHHhcCCCCcEEEEe
Q 044572          352 NI-SWHNADNSIEPLSWL---VGSDVLVVDPPRK----G--LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       352 nv-~~~~~d~~~~~~~~~---~~~D~vi~DPPR~----G--l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++ +++.+|+.+......   +.||+|++.---.    .  -...+++.+.++-.+++.++++
T Consensus       135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  197 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMV  197 (265)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Confidence            27 899999987532112   5799998743211    1  0123455555544466666654

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.48  E-value=2.7e-07  Score=90.70  Aligned_cols=103  Identities=7%  Similarity=0.049  Sum_probs=67.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCC---CcEEEEEccCCcCc-----c-c-c
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVD---GNISWHNADNSIEP-----L-S-W  367 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~---~nv~~~~~d~~~~~-----~-~-~  367 (457)
                      ++.+|||+|||+|.....++. .+..+|+|||+|+.|++.|++.+...+....   -+++|+++|+....     . . .
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~-~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFY-GEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            378999999999986665554 3356999999999999999998765221100   03678888873211     0 0 1


Q ss_pred             cCCccEEEE--------CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          368 LVGSDVLVV--------DPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       368 ~~~~D~vi~--------DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .+.||+|++        ++.  .. ..+++.+.++-.++++++++
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~--~~-~~~l~~~~r~LkpGG~~i~~  168 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPR--HY-ATVMNNLSELTASGGKVLIT  168 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTT--TH-HHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCeeEEEECchHHHhCCHH--HH-HHHHHHHHHHcCCCCEEEEE
Confidence            257999974        333  12 35666666654577777665

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.45  E-value=3.2e-06  Score=85.13  Aligned_cols=100  Identities=11%  Similarity=0.048  Sum_probs=73.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.++..+++.....+++++|+ +.+++.|++++...  +..++++|+.+|+++...   ..||+|++.
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~l~~~v~~~~~d~~~~~p---~~~D~v~~~  275 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGR--GLADRCEILPGDFFETIP---DGADVYLIK  275 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--TCTTTEEEEECCTTTCCC---SSCSEEEEE
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhc--CcCCceEEeccCCCCCCC---CCceEEEhh
Confidence            578999999999999999998755568999999 99999999998773  334689999999984322   279999884


Q ss_pred             CCCCCccH----HHHHHHHhcCCCCcEEEE
Q 044572          378 PPRKGLDS----SLVHALQSIGSAERKAKS  403 (457)
Q Consensus       378 PPR~Gl~~----~v~~~l~~~~~~~~ivyv  403 (457)
                      ---...+.    .+++.+.+.-++++.+++
T Consensus       276 ~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i  305 (369)
T 3gwz_A          276 HVLHDWDDDDVVRILRRIATAMKPDSRLLV  305 (369)
T ss_dssp             SCGGGSCHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             hhhccCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            33111122    356666554445555555

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.45  E-value=3.9e-07  Score=84.59  Aligned_cols=111  Identities=12%  Similarity=-0.018  Sum_probs=76.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEE
Q 044572          276 SFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISW  355 (457)
Q Consensus       276 ~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~  355 (457)
                      .||+.+.......+..+....+ +.+|||+|||+|.++..++..      +|+|+++.+++.|+++          ++++
T Consensus        26 ~~~~~~~~~~~~~~~~l~~~~~-~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~----------~~~~   88 (219)
T 1vlm_A           26 RWFLVHRFAYLSELQAVKCLLP-EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR----------GVFV   88 (219)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHCC-SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT----------TCEE
T ss_pred             HHHHhcchhHHHHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc----------CCEE
Confidence            3444455555555565666554 889999999999999988742      9999999999998865          3588


Q ss_pred             EEccCCcCcccccCCccEEEECCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          356 HNADNSIEPLSWLVGSDVLVVDPPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       356 ~~~d~~~~~~~~~~~~D~vi~DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +++|+.+... ..+.||+|++.-.-.-+  ...+++.+.+...+++.++++
T Consensus        89 ~~~d~~~~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~  138 (219)
T 1vlm_A           89 LKGTAENLPL-KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVG  138 (219)
T ss_dssp             EECBTTBCCS-CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcccccCCC-CCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence            9999876432 13579999986542111  134566665544466666665

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.44  E-value=1.1e-06  Score=88.35  Aligned_cols=102  Identities=12%  Similarity=0.039  Sum_probs=73.6

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.+++.++......+++++|+ +.+++.|++|+...  +..++++|+.+|+.+.+   ...||+|++
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~---~~~~D~v~~  254 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA--GLADRVTVAEGDFFKPL---PVTADVVLL  254 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--TCTTTEEEEECCTTSCC---SCCEEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhc--CCCCceEEEeCCCCCcC---CCCCCEEEE
Confidence            3578999999999999999998754458999999 99999999998873  33458999999987632   234999998


Q ss_pred             CCCCCCccH----HHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKGLDS----SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~Gl~~----~v~~~l~~~~~~~~ivyvs  404 (457)
                      .-.-.....    .+++.+.+.-.+++.+++.
T Consensus       255 ~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~  286 (374)
T 1qzz_A          255 SFVLLNWSDEDALTILRGCVRALEPGGRLLVL  286 (374)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            654222222    3555555433355655543

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.43  E-value=2.3e-07  Score=98.31  Aligned_cols=102  Identities=19%  Similarity=0.137  Sum_probs=71.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC---------------CCEEEEEeCCHHHHHHHH
Q 044572          275 SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK---------------CRSVKCVEINKESQLSFE  339 (457)
Q Consensus       275 ~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~---------------~~~V~gVE~~~~av~~A~  339 (457)
                      +.||. -+...+.|++.+..   ...+|+|.+||||+|.+.++....               ...++|+|+++.+++.|+
T Consensus       225 G~fyT-P~~Vv~lmv~ll~p---~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~  300 (544)
T 3khk_A          225 GQYYT-PKSIVTLIVEMLEP---YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAA  300 (544)
T ss_dssp             TTTCC-CHHHHHHHHHHHCC---CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHH
T ss_pred             CeEeC-CHHHHHHHHHHHhc---CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHH
Confidence            45564 46666666665422   223999999999999888764210               237999999999999999


Q ss_pred             HHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCC
Q 044572          340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKG  382 (457)
Q Consensus       340 ~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~G  382 (457)
                      .|+...  +...++.+.++|...........||+||.|||+.+
T Consensus       301 ~Nl~l~--gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~  341 (544)
T 3khk_A          301 MNMVIR--GIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNM  341 (544)
T ss_dssp             HHHHHT--TCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSC
T ss_pred             HHHHHh--CCCcccceeccchhcCcccccccccEEEECCCcCC
Confidence            999874  23334545788876543222357999999999753

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.42  E-value=1.3e-06  Score=87.86  Aligned_cols=76  Identities=17%  Similarity=0.125  Sum_probs=61.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      ...+|||+|||+|.++..+++.....+|+++|+ +.+++.|+++++..  +..++++|+.+|+++....+.+.||+|++
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~p~~~D~v~~  254 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGL--SGSERIHGHGANLLDRDVPFPTGFDAVWM  254 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTC--TTGGGEEEEECCCCSSSCCCCCCCSEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhc--CcccceEEEEccccccCCCCCCCcCEEEE
Confidence            568999999999999999998655568999999 99999999998763  23468999999998741011257999988

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.41  E-value=7.4e-07  Score=84.18  Aligned_cols=99  Identities=14%  Similarity=0.070  Sum_probs=62.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE-ccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN-ADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~-~d~~~~~~~~~~~~D~vi~  376 (457)
                      .+.+|||+|||+|.++..+++. ++.+|+|||+++.|++.|++|..........|+.++. .|+..      ..+|.+.+
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~------~~~d~~~~  109 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ------GRPSFTSI  109 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS------CCCSEEEE
T ss_pred             CCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc------CCCCEEEE
Confidence            5779999999999999999985 5679999999999999988764321000011222222 11110      12566777


Q ss_pred             CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |-....+. .++..+.+.-.+++.+++.
T Consensus       110 D~v~~~l~-~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          110 DVSFISLD-LILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             CCSSSCGG-GTHHHHHHHSCTTCEEEEE
T ss_pred             EEEhhhHH-HHHHHHHHhccCCCEEEEE
Confidence            76665553 4555555544455555554

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.40  E-value=3.3e-06  Score=81.60  Aligned_cols=100  Identities=12%  Similarity=-0.027  Sum_probs=70.3

Q ss_pred             CCeEEEEcccc---cHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc---------c
Q 044572          299 GASVTDLYAGA---GVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL---------S  366 (457)
Q Consensus       299 ~~~vLDl~cG~---G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~---------~  366 (457)
                      ..+|||+|||+   |.++..+++.....+|++||+|+.+++.|++++..     ..+++|+++|+.+...         .
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-----~~~v~~~~~D~~~~~~~~~~~~~~~~  152 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-----DPNTAVFTADVRDPEYILNHPDVRRM  152 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-----CTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-----CCCeEEEEeeCCCchhhhccchhhcc
Confidence            47999999999   99887776543345999999999999999998753     2579999999976310         1


Q ss_pred             c-cCCccEEEECC-----CCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          367 W-LVGSDVLVVDP-----PRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       367 ~-~~~~D~vi~DP-----PR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      + ...||+|++.-     |... ...+++.+.+.-++++.++++
T Consensus       153 ~d~~~~d~v~~~~vlh~~~d~~-~~~~l~~~~~~L~pGG~l~i~  195 (274)
T 2qe6_A          153 IDFSRPAAIMLVGMLHYLSPDV-VDRVVGAYRDALAPGSYLFMT  195 (274)
T ss_dssp             CCTTSCCEEEETTTGGGSCTTT-HHHHHHHHHHHSCTTCEEEEE
T ss_pred             CCCCCCEEEEEechhhhCCcHH-HHHHHHHHHHhCCCCcEEEEE
Confidence            1 14789998753     2111 234666666643466666665

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.40  E-value=1.5e-06  Score=86.99  Aligned_cols=101  Identities=9%  Similarity=-0.003  Sum_probs=73.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.++..++......+++++|+ +.+++.|++|++..  +..++++|+.+|+.+.+.   ..||+|++.
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~---~~~D~v~~~  256 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE--GLSDRVDVVEGDFFEPLP---RKADAIILS  256 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT--TCTTTEEEEECCTTSCCS---SCEEEEEEE
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhc--CCCCceEEEeCCCCCCCC---CCccEEEEc
Confidence            578999999999999999998754458999999 99999999998873  334589999999876332   359999885


Q ss_pred             CCCCCccH----HHHHHHHhcCCCCcEEEEe
Q 044572          378 PPRKGLDS----SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PPR~Gl~~----~v~~~l~~~~~~~~ivyvs  404 (457)
                      -.-.....    .+++.+.+.-.+++.+++.
T Consensus       257 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~  287 (360)
T 1tw3_A          257 FVLLNWPDHDAVRILTRCAEALEPGGRILIH  287 (360)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccccCCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            54222222    3555555543355655553

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.39  E-value=6.1e-07  Score=87.52  Aligned_cols=96  Identities=9%  Similarity=0.007  Sum_probs=63.4

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEE-EccCCcCccc-cc-CCccEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH-NADNSIEPLS-WL-VGSDVL  374 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~-~~d~~~~~~~-~~-~~~D~v  374 (457)
                      .+.+|||+|||||.|+..+++. ++++|+|||+++.|++.+.++.        .++... ..++...... +. ..||+|
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~--------~rv~~~~~~ni~~l~~~~l~~~~fD~v  155 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQD--------DRVRSMEQYNFRYAEPVDFTEGLPSFA  155 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTC--------TTEEEECSCCGGGCCGGGCTTCCCSEE
T ss_pred             cccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC--------cccceecccCceecchhhCCCCCCCEE
Confidence            5789999999999999999875 6789999999999998865431        122222 2233222111 11 249999


Q ss_pred             EECCCCCCccHHHHHHHHh-cCCCCcEEEE
Q 044572          375 VVDPPRKGLDSSLVHALQS-IGSAERKAKS  403 (457)
Q Consensus       375 i~DPPR~Gl~~~v~~~l~~-~~~~~~ivyv  403 (457)
                      ++|--...+.. ++..+.+ +++.++++.+
T Consensus       156 ~~d~sf~sl~~-vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          156 SIDVSFISLNL-ILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             EECCSSSCGGG-THHHHHHHSCTTCEEEEE
T ss_pred             EEEeeHhhHHH-HHHHHHHHcCcCCEEEEE
Confidence            99987666644 5555544 5555566555

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.38  E-value=4e-06  Score=83.89  Aligned_cols=101  Identities=8%  Similarity=-0.031  Sum_probs=72.4

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.++..+++.....+|+++|+ +.+++.|+++++..  +..++++++.+|+++..   ...+|+|++
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~---~~~~D~v~~  262 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK--GVADRMRGIAVDIYKES---YPEADAVLF  262 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT--TCTTTEEEEECCTTTSC---CCCCSEEEE
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhc--CCCCCEEEEeCccccCC---CCCCCEEEE
Confidence            3678999999999999999998754459999999 99999999998873  23356999999998752   234599988


Q ss_pred             CCCCCCcc----HHHHHHHHhcCCCCcEEEE
Q 044572          377 DPPRKGLD----SSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       377 DPPR~Gl~----~~v~~~l~~~~~~~~ivyv  403 (457)
                      .-.-....    ..+++.+.+.-++++.+++
T Consensus       263 ~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i  293 (359)
T 1x19_A          263 CRILYSANEQLSTIMCKKAFDAMRSGGRLLI  293 (359)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             echhccCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            54422222    2345555554345555544

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.35  E-value=1.7e-06  Score=85.43  Aligned_cols=102  Identities=13%  Similarity=0.072  Sum_probs=71.7

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.++..++......+|+++|++ .+++.|++++...  +..++++|+.+|+.+..  ....||+|++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~--~~~~~D~v~~  238 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQ--GVASRYHTIAGSAFEVD--YGNDYDLVLL  238 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHH--TCGGGEEEEESCTTTSC--CCSCEEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhc--CCCcceEEEecccccCC--CCCCCcEEEE
Confidence            45789999999999999999987544599999999 9999999998763  23357999999997642  2345999998


Q ss_pred             CCCCCCcc----HHHHHHHHhcCCCCcEEEE
Q 044572          377 DPPRKGLD----SSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       377 DPPR~Gl~----~~v~~~l~~~~~~~~ivyv  403 (457)
                      .-.-...+    ..+++.+.+.-.+++.+++
T Consensus       239 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i  269 (335)
T 2r3s_A          239 PNFLHHFDVATCEQLLRKIKTALAVEGKVIV  269 (335)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cchhccCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence            33211111    2345555443335554444

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.34  E-value=3e-06  Score=83.82  Aligned_cols=73  Identities=14%  Similarity=0.058  Sum_probs=60.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      +..+|||+|||+|.++..+++.....+++++|+ +.+++.|++++...  +..++++|+.+|+++...   ..||+|++
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~p---~~~D~v~~  241 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDT--GLSGRAQVVVGSFFDPLP---AGAGGYVL  241 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--TCTTTEEEEECCTTSCCC---CSCSEEEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhc--CcCcCeEEecCCCCCCCC---CCCcEEEE
Confidence            467999999999999999998655568999999 99999999998763  334689999999974322   27999988

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.33  E-value=2.1e-06  Score=85.53  Aligned_cols=102  Identities=11%  Similarity=0.059  Sum_probs=72.5

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECC
Q 044572          299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDP  378 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DP  378 (457)
                      +.+|||+|||+|.++..+++.....+++++|+ +.+++.|+++++..  +..++++++.+|+++........||+|++.-
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~  256 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAH--DLGGRVEFFEKNLLDARNFEGGAADVVMLND  256 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT--TCGGGEEEEECCTTCGGGGTTCCEEEEEEES
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhc--CCCCceEEEeCCcccCcccCCCCccEEEEec
Confidence            78999999999999999998755569999999 88999999998873  3345799999999875311235699999843


Q ss_pred             CCCCcc----HHHHHHHHhcCCCCcEEEE
Q 044572          379 PRKGLD----SSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       379 PR~Gl~----~~v~~~l~~~~~~~~ivyv  403 (457)
                      --...+    ..+++.+.+.-++++.+++
T Consensus       257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i  285 (352)
T 3mcz_A          257 CLHYFDAREAREVIGHAAGLVKPGGALLI  285 (352)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccccCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            211112    2345555443335555555

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.33  E-value=8.2e-07  Score=82.06  Aligned_cols=101  Identities=12%  Similarity=0.071  Sum_probs=70.4

Q ss_pred             HHhhC-CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cC
Q 044572          292 LQKYV-PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LV  369 (457)
Q Consensus       292 i~~~~-~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~  369 (457)
                      +.+.+ .++.+|||+|||+|.++..++.. + .+|+|+|+++.+++.|+++.          .+++.+|+.+..... .+
T Consensus        25 l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~----------~~~~~~d~~~~~~~~~~~   92 (230)
T 3cc8_A           25 LLKHIKKEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL----------DHVVLGDIETMDMPYEEE   92 (230)
T ss_dssp             HHTTCCTTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS----------SEEEESCTTTCCCCSCTT
T ss_pred             HHHHhccCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC----------CcEEEcchhhcCCCCCCC
Confidence            34444 36789999999999999999986 4 69999999999999887542          167889987632222 25


Q ss_pred             CccEEEECCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          370 GSDVLVVDPPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       370 ~~D~vi~DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .||+|++.-.-.-+  ...+++.+.+.-.+++.++++
T Consensus        93 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~  129 (230)
T 3cc8_A           93 QFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILAS  129 (230)
T ss_dssp             CEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEE
T ss_pred             ccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence            79999985432111  134556555544467777775

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.30  E-value=5.1e-07  Score=87.05  Aligned_cols=76  Identities=22%  Similarity=0.132  Sum_probs=54.2

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEE--EccCCcCcccccCCccE
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH--NADNSIEPLSWLVGSDV  373 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~--~~d~~~~~~~~~~~~D~  373 (457)
                      +.++.+|||||||+|.++..+++.   .+|+|||+++ ++..++++.... .....++.|+  ++|+.+..   ...||+
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~-~~~~~~v~~~~~~~D~~~l~---~~~fD~  143 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRIT-ESYGWNIVKFKSRVDIHTLP---VERTDV  143 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCC-CBTTGGGEEEECSCCTTTSC---CCCCSE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhh-hccCCCeEEEecccCHhHCC---CCCCcE
Confidence            457889999999999999999975   4899999998 433222211000 0011278999  99998743   357999


Q ss_pred             EEECCC
Q 044572          374 LVVDPP  379 (457)
Q Consensus       374 vi~DPP  379 (457)
                      |+.|-.
T Consensus       144 V~sd~~  149 (265)
T 2oxt_A          144 IMCDVG  149 (265)
T ss_dssp             EEECCC
T ss_pred             EEEeCc
Confidence            999976

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.26  E-value=3.5e-06  Score=83.26  Aligned_cols=99  Identities=15%  Similarity=0.131  Sum_probs=70.5

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCC
Q 044572          300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPP  379 (457)
Q Consensus       300 ~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPP  379 (457)
                      .+|||+|||+|.++..++......+++++|+ +.+++.|++++...  +..++++++.+|+.+..   ...||+|++.-.
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~---~~~~D~v~~~~v  242 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSL--LAGERVSLVGGDMLQEV---PSNGDIYLLSRI  242 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHH--HHTTSEEEEESCTTTCC---CSSCSEEEEESC
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhc--CCCCcEEEecCCCCCCC---CCCCCEEEEchh
Confidence            8999999999999999998654458999999 99999999987652  22357999999997732   256999998443


Q ss_pred             CCCccH----HHHHHHHhcCCCCcEEEEe
Q 044572          380 RKGLDS----SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       380 R~Gl~~----~v~~~l~~~~~~~~ivyvs  404 (457)
                      -.....    .+++.+.+.-.+++.+++.
T Consensus       243 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~  271 (334)
T 2ip2_A          243 IGDLDEAASLRLLGNCREAMAGDGRVVVI  271 (334)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            211111    4455555433355555553

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.23  E-value=2e-06  Score=83.21  Aligned_cols=106  Identities=11%  Similarity=0.045  Sum_probs=66.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC--------------C-C------------
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS--------------V-D------------  350 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~--------------~-~------------  350 (457)
                      ++.+|||+|||+|.+++.++.. +..+|+|||+|+.|++.|+++++.....              + .            
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            5789999999999977655542 3459999999999999999876531100              0 0            


Q ss_pred             CcEEEEEccCCcCcc-c---c-cCCccEEEECCCCCC----c--cHHHHHHHHhcCCCCcEEEEe
Q 044572          351 GNISWHNADNSIEPL-S---W-LVGSDVLVVDPPRKG----L--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       351 ~nv~~~~~d~~~~~~-~---~-~~~~D~vi~DPPR~G----l--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ..++++.+|+.+.+. .   . .+.||+|+..---.-    +  ...+++.+.++-.+++.++++
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~  214 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI  214 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            015677778876321 1   1 135999988642110    1  123455555544466666654

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=98.22  E-value=5.4e-06  Score=82.27  Aligned_cols=93  Identities=19%  Similarity=0.201  Sum_probs=69.6

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECC
Q 044572          299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDP  378 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DP  378 (457)
                      +.+++|||||+|.+++.+.. .|+..|.++|+++.|++..+.|....      .    ++|+.+........+|+|+.+|
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~-aG~~~v~~~e~d~~a~~t~~~N~~~~------~----~~Di~~~~~~~~~~~D~l~~gp   79 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALES-CGAECVYSNEWDKYAQEVYEMNFGEK------P----EGDITQVNEKTIPDHDILCAGF   79 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHH-TTCEEEEEECCCHHHHHHHHHHHSCC------C----BSCGGGSCGGGSCCCSEEEEEC
T ss_pred             CCcEEEECCCcCHHHHHHHH-CCCeEEEEEeCCHHHHHHHHHHcCCC------C----cCCHHHcCHhhCCCCCEEEECC
Confidence            46899999999999999886 57888999999999999999997431      1    5888776544445799999999


Q ss_pred             CCC---------Cc-------cHHHHHHHHhcCCCCcEEEEe
Q 044572          379 PRK---------GL-------DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       379 PR~---------Gl-------~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |-.         |.       -.++++.+..++ | +++.+.
T Consensus        80 PCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~-P-~~~~~E  119 (327)
T 2c7p_A           80 PCQAFSISGKQKGFEDSRGTLFFDIARIVREKK-P-KVVFME  119 (327)
T ss_dssp             CCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHC-C-SEEEEE
T ss_pred             CCCCcchhcccCCCcchhhHHHHHHHHHHHhcc-C-cEEEEe
Confidence            932         22       124566666665 4 455554

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.21  E-value=3.9e-06  Score=72.80  Aligned_cols=91  Identities=15%  Similarity=0.206  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHhhCCCCCeEEEEccccc-HHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572          284 AFDILLRKLQKYVPYGASVTDLYAGAG-VIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI  362 (457)
Q Consensus       284 ~~~~l~~~i~~~~~~~~~vLDl~cG~G-~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~  362 (457)
                      +.+.|.+.+.+...++.+|||+|||.| ..+..||...++ .|+++|+++.|++                  |++.|+++
T Consensus        21 m~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~------------------~v~dDiF~   81 (153)
T 2k4m_A           21 MWNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG------------------IVRDDITS   81 (153)
T ss_dssp             HHHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT------------------EECCCSSS
T ss_pred             HHHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc------------------eEEccCCC
Confidence            345666666665556789999999999 599999974443 6999999999874                  78889887


Q ss_pred             CcccccCCccEE-EECCCCCCccHHHHHHHHhc
Q 044572          363 EPLSWLVGSDVL-VVDPPRKGLDSSLVHALQSI  394 (457)
Q Consensus       363 ~~~~~~~~~D~v-i~DPPR~Gl~~~v~~~l~~~  394 (457)
                      -..+.-..||+| -++||+. +.+.+++.-.+.
T Consensus        82 P~~~~Y~~~DLIYsirPP~E-l~~~i~~lA~~v  113 (153)
T 2k4m_A           82 PRMEIYRGAALIYSIRPPAE-IHSSLMRVADAV  113 (153)
T ss_dssp             CCHHHHTTEEEEEEESCCTT-THHHHHHHHHHH
T ss_pred             CcccccCCcCEEEEcCCCHH-HHHHHHHHHHHc
Confidence            543333589999 8999973 333344433333

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.18  E-value=3.3e-06  Score=82.61  Aligned_cols=56  Identities=23%  Similarity=0.224  Sum_probs=45.9

Q ss_pred             HHHHHHHhhC-CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          287 ILLRKLQKYV-PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       287 ~l~~~i~~~~-~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      .|++.+++.. .+|+.|||+|||+|++++.++..+  ++++|||+++++++.|++|++.
T Consensus       223 ~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g--~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          223 ELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARWG--RRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHH
Confidence            3444444433 478999999999999999998753  5999999999999999999876

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.18  E-value=2.8e-07  Score=89.46  Aligned_cols=76  Identities=18%  Similarity=0.122  Sum_probs=54.5

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEE--EccCCcCcccccCCccE
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH--NADNSIEPLSWLVGSDV  373 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~--~~d~~~~~~~~~~~~D~  373 (457)
                      +.++.+|||||||+|.++..+|+.   .+|+|||+++ ++..++++.... .....++.|+  ++|+.+..   ...||+
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~-~~~~~~v~~~~~~~D~~~l~---~~~fD~  151 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLV-ETFGWNLITFKSKVDVTKME---PFQADT  151 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCC-CCTTGGGEEEECSCCGGGCC---CCCCSE
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhh-hhcCCCeEEEeccCcHhhCC---CCCcCE
Confidence            346889999999999999999975   4899999998 533332221100 0111278999  99987743   357999


Q ss_pred             EEECCC
Q 044572          374 LVVDPP  379 (457)
Q Consensus       374 vi~DPP  379 (457)
                      |+.|-.
T Consensus       152 Vvsd~~  157 (276)
T 2wa2_A          152 VLCDIG  157 (276)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999976

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.11  E-value=4.3e-06  Score=81.14  Aligned_cols=105  Identities=17%  Similarity=0.125  Sum_probs=62.6

Q ss_pred             CCCeEEEEcccccHHHHHHH----hhCCCCEE--EEEeCCHHHHHHHHHHHhhCCCCCCCcEEE--EEccCCcCccc---
Q 044572          298 YGASVTDLYAGAGVIGLSLA----AARKCRSV--KCVEINKESQLSFEKTVSRLPKSVDGNISW--HNADNSIEPLS---  366 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA----~~~~~~~V--~gVE~~~~av~~A~~Na~~~~~~~~~nv~~--~~~d~~~~~~~---  366 (457)
                      ++.+|||+|||+|.+++.++    ......+|  +|||.|++|++.|+++++..  ....++.+  ..+++.+....   
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~  129 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKT--SNLENVKFAWHKETSSEYQSRMLE  129 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTC--SSCTTEEEEEECSCHHHHHHHHHT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhc--cCCCcceEEEEecchhhhhhhhcc
Confidence            45789999999998776433    22222334  99999999999999987642  12345544  45555433211   


Q ss_pred             --ccCCccEEEECCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          367 --WLVGSDVLVVDPPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       367 --~~~~~D~vi~DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                        ..+.||+|++-=--.-+  ...+++.+.++-.+++.+.+.
T Consensus       130 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~  171 (292)
T 2aot_A          130 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLII  171 (292)
T ss_dssp             TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEE
Confidence              13579999873210000  124566666543456655553

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.08  E-value=8.4e-06  Score=86.15  Aligned_cols=102  Identities=17%  Similarity=0.098  Sum_probs=71.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-------------CCEEEEEeCCHHHHHHHHHH
Q 044572          275 SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-------------CRSVKCVEINKESQLSFEKT  341 (457)
Q Consensus       275 ~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-------------~~~V~gVE~~~~av~~A~~N  341 (457)
                      +-||.. +...+.|++.+..  ..+.+|+|.+||||+|-+.+.....             -..++|+|+++.++..|+.|
T Consensus       197 GqfyTP-~~Vv~lmv~l~~p--~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mN  273 (530)
T 3ufb_A          197 GEFYTP-RPVVRFMVEVMDP--QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMN  273 (530)
T ss_dssp             CCCCCC-HHHHHHHHHHHCC--CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHH
T ss_pred             ceECCc-HHHHHHHHHhhcc--CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHH
Confidence            567753 5666665554322  3578999999999999887764210             13699999999999999999


Q ss_pred             HhhCCCCCCCcEEEEEccCCcCcccc---cCCccEEEECCCCCC
Q 044572          342 VSRLPKSVDGNISWHNADNSIEPLSW---LVGSDVLVVDPPRKG  382 (457)
Q Consensus       342 a~~~~~~~~~nv~~~~~d~~~~~~~~---~~~~D~vi~DPPR~G  382 (457)
                      +-..   +.+...+..+|........   ..+||+||.|||..+
T Consensus       274 l~lh---g~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~  314 (530)
T 3ufb_A          274 LLLH---GLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGG  314 (530)
T ss_dssp             HHHH---TCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSC
T ss_pred             HHhc---CCccccccccccccCchhhhcccccceEEEecCCCCc
Confidence            8762   3344466778875432211   247999999999753

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.08  E-value=5.2e-06  Score=80.01  Aligned_cols=84  Identities=10%  Similarity=0.013  Sum_probs=65.1

Q ss_pred             HHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc
Q 044572          288 LLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL  365 (457)
Q Consensus       288 l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~  365 (457)
                      |++.+++.+  .++..+||+.||.|..+..++..  ..+|+|+|.+++|++.|++ ++.      +++++++++..+...
T Consensus        10 Ll~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~------~rv~lv~~~f~~l~~   80 (285)
T 1wg8_A           10 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL------PGLTVVQGNFRHLKR   80 (285)
T ss_dssp             THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC------TTEEEEESCGGGHHH
T ss_pred             HHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc------CCEEEEECCcchHHH
Confidence            344444443  36889999999999999999986  3499999999999999987 532      589999999876421


Q ss_pred             ---cc-cCCccEEEECCCC
Q 044572          366 ---SW-LVGSDVLVVDPPR  380 (457)
Q Consensus       366 ---~~-~~~~D~vi~DPPR  380 (457)
                         .. ...+|.|++|+..
T Consensus        81 ~L~~~g~~~vDgIL~DLGv   99 (285)
T 1wg8_A           81 HLAALGVERVDGILADLGV   99 (285)
T ss_dssp             HHHHTTCSCEEEEEEECSC
T ss_pred             HHHHcCCCCcCEEEeCCcc
Confidence               11 1469999999984

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.07  E-value=5.8e-05  Score=69.52  Aligned_cols=113  Identities=12%  Similarity=0.008  Sum_probs=75.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572          281 NTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN  360 (457)
Q Consensus       281 n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~  360 (457)
                      ...+.+.|...+    .+.++||++|||  .-|+.+|+.. .++|+.||.+++..+.|++|++.++....++|+++.+|+
T Consensus        17 ~~~~~~~L~~~l----~~a~~VLEiGtG--ySTl~lA~~~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda   89 (202)
T 3cvo_A           17 PPAEAEALRMAY----EEAEVILEYGSG--GSTVVAAELP-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDI   89 (202)
T ss_dssp             CHHHHHHHHHHH----HHCSEEEEESCS--HHHHHHHTST-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCC
T ss_pred             CHHHHHHHHHHh----hCCCEEEEECch--HHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCc
Confidence            344544443322    246899999984  6777777642 369999999999999999999984310057899999997


Q ss_pred             CcC--------------ccc-------cc--CCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          361 SIE--------------PLS-------WL--VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       361 ~~~--------------~~~-------~~--~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      .+.              +..       ..  ..||+|++|=... . .-+...+..++ +++++.+
T Consensus        90 ~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~-~-~~~~~~l~~l~-~GG~Iv~  152 (202)
T 3cvo_A           90 GPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR-V-GCALATAFSIT-RPVTLLF  152 (202)
T ss_dssp             SSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH-H-HHHHHHHHHCS-SCEEEEE
T ss_pred             hhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc-h-hHHHHHHHhcC-CCeEEEE
Confidence            653              111       11  5699999997532 1 22344555564 7777755

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.07  E-value=9.3e-06  Score=79.79  Aligned_cols=74  Identities=19%  Similarity=0.121  Sum_probs=52.9

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeC----CHHHHHHHHHHHhhCCCCCCCcEEEEEc-cCCcCcccccCC
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEI----NKESQLSFEKTVSRLPKSVDGNISWHNA-DNSIEPLSWLVG  370 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~----~~~av~~A~~Na~~~~~~~~~nv~~~~~-d~~~~~~~~~~~  370 (457)
                      +.++.+|||||||+|.++..+|+.   .+|+|||+    ++.+++.+  .++.   ...+++.|+++ |+....   ...
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~--~~~~---~~~~~v~~~~~~D~~~l~---~~~  148 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPI--PMST---YGWNLVRLQSGVDVFFIP---PER  148 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCC--CCCS---TTGGGEEEECSCCTTTSC---CCC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHH--Hhhh---cCCCCeEEEeccccccCC---cCC
Confidence            456889999999999999999975   38999999    55433211  1111   11257999999 887643   257


Q ss_pred             ccEEEECCCC
Q 044572          371 SDVLVVDPPR  380 (457)
Q Consensus       371 ~D~vi~DPPR  380 (457)
                      ||+|+.|-+-
T Consensus       149 fD~V~sd~~~  158 (305)
T 2p41_A          149 CDTLLCDIGE  158 (305)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999999653

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.04  E-value=7e-05  Score=72.87  Aligned_cols=108  Identities=13%  Similarity=0.019  Sum_probs=83.1

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhC--CCCCCCcEEEEEccCCcCcccccCCccEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL--PKSVDGNISWHNADNSIEPLSWLVGSDVL  374 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~--~~~~~~nv~~~~~d~~~~~~~~~~~~D~v  374 (457)
                      +.-++||=+|.|.|+..-.+++.....+|+.||++++.++.+++-....  +.....+++++.+|+.+++....++||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            4568999999999999999998666789999999999999998764321  11124689999999999887666789999


Q ss_pred             EECCCCC-C-----ccHHHHHHHHhcCCCCcEEEEe
Q 044572          375 VVDPPRK-G-----LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       375 i~DPPR~-G-----l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+|.+-. |     .+.+..+.+.+.-.+++++.+-
T Consensus       162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred             EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence            9997632 1     2346777777665577776664

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=98.01  E-value=9e-06  Score=77.92  Aligned_cols=46  Identities=15%  Similarity=0.166  Sum_probs=42.1

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      .+|+.|||.|||+|++++.++..+  ++++|+|+++.+++.|++|++.
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~g--r~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLG--RNFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHC
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHh
Confidence            478999999999999999988753  5999999999999999999986

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.95  E-value=1.8e-05  Score=77.15  Aligned_cols=121  Identities=13%  Similarity=0.004  Sum_probs=71.3

Q ss_pred             CHHHHHHHHHHHH-h--hCCCCCeEEEEccc------ccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCC
Q 044572          281 NTRAFDILLRKLQ-K--YVPYGASVTDLYAG------AGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVD  350 (457)
Q Consensus       281 n~~~~~~l~~~i~-~--~~~~~~~vLDl~cG------~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~  350 (457)
                      |...+..+.+.+. .  .+.++.+|||+|||      +|+  ..+++..+ ..+|+|||+++. +               
T Consensus        43 n~~~y~~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------------  104 (290)
T 2xyq_A           43 NVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------------  104 (290)
T ss_dssp             HHHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------------
T ss_pred             cHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------------
Confidence            3334455555542 1  23478999999994      477  44454444 369999999998 1               


Q ss_pred             CcEEE-EEccCCcCcccccCCccEEEECCCCC--C-----------ccHHHHHHHHhcCCCCcEEEEeccCCCCCchhch
Q 044572          351 GNISW-HNADNSIEPLSWLVGSDVLVVDPPRK--G-----------LDSSLVHALQSIGSAERKAKSLSESSSSMVKEEK  416 (457)
Q Consensus       351 ~nv~~-~~~d~~~~~~~~~~~~D~vi~DPPR~--G-----------l~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~  416 (457)
                      .++++ +++|+.+...  ...||+|+.|++-.  |           +-..+++.+.+.-.+++.+++.     .......
T Consensus       105 ~~v~~~i~gD~~~~~~--~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~-----~~~~~~~  177 (290)
T 2xyq_A          105 SDADSTLIGDCATVHT--ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK-----ITEHSWN  177 (290)
T ss_dssp             CSSSEEEESCGGGCCC--SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE-----ECSSSCC
T ss_pred             CCCEEEEECccccCCc--cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEE-----EeccCCH
Confidence            24678 9999976432  25799999996421  1           1123455544433356666654     2222233


Q ss_pred             hhHHHHHHHh
Q 044572          417 RPWILRAKEA  426 (457)
Q Consensus       417 ~~~~~~~~~~  426 (457)
                      ..+...++..
T Consensus       178 ~~l~~~l~~~  187 (290)
T 2xyq_A          178 ADLYKLMGHF  187 (290)
T ss_dssp             HHHHHHHTTE
T ss_pred             HHHHHHHHHc
Confidence            4555555544

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.93  E-value=2.1e-05  Score=84.40  Aligned_cols=101  Identities=15%  Similarity=0.107  Sum_probs=69.5

Q ss_pred             CCeEEEEcccccHHHH---HHHhhCC----------CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc
Q 044572          299 GASVTDLYAGAGVIGL---SLAAARK----------CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL  365 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl---~lA~~~~----------~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~  365 (457)
                      +..|||+|||+|.++.   .+++..+          ..+|+|||.|+.|+..+++....   +..++|+++++|++++..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~N---g~~d~VtVI~gd~eev~l  486 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVR---TWKRRVTIIESDMRSLPG  486 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHH---TTTTCSEEEESCGGGHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhc---CCCCeEEEEeCchhhccc
Confidence            3579999999999964   3433111          34999999999988776655442   344679999999988632


Q ss_pred             c----ccCCccEEEECCC-CCC---ccHHHHHHHHhcCCCCcEEE
Q 044572          366 S----WLVGSDVLVVDPP-RKG---LDSSLVHALQSIGSAERKAK  402 (457)
Q Consensus       366 ~----~~~~~D~vi~DPP-R~G---l~~~v~~~l~~~~~~~~ivy  402 (457)
                      .    ..++.|+||...- ..|   +.++++....+...++++++
T Consensus       487 p~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          487 IAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence            1    1367999999887 344   34466666665544666654

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.92  E-value=5.2e-05  Score=73.14  Aligned_cols=103  Identities=13%  Similarity=-0.060  Sum_probs=63.9

Q ss_pred             CCeEEEEccccc--HHHHHHHh-hCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-----cCC
Q 044572          299 GASVTDLYAGAG--VIGLSLAA-ARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-----LVG  370 (457)
Q Consensus       299 ~~~vLDl~cG~G--~~sl~lA~-~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-----~~~  370 (457)
                      ..+|||||||+|  .....++. .....+|++||.|+.|++.|++++...   ...+++|+++|+.+....+     ...
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~---~~~~~~~v~aD~~~~~~~l~~~~~~~~  155 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST---PEGRTAYVEADMLDPASILDAPELRDT  155 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC---SSSEEEEEECCTTCHHHHHTCHHHHTT
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC---CCCcEEEEEecccChhhhhcccccccc
Confidence            368999999973  23344443 233469999999999999999887642   2357999999998742100     123


Q ss_pred             cc-----EEEECCCCC---Cc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          371 SD-----VLVVDPPRK---GL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       371 ~D-----~vi~DPPR~---Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ||     .|+++-=-.   .-  ...++..+.....++..+.++
T Consensus       156 ~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls  199 (277)
T 3giw_A          156 LDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMS  199 (277)
T ss_dssp             CCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEE
T ss_pred             cCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEE
Confidence            44     454422100   00  124666666655577777665

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.91  E-value=0.00011  Score=73.31  Aligned_cols=72  Identities=18%  Similarity=0.231  Sum_probs=58.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      ...+|+|+|||+|.+++.++++....+++..|. +++++.|+++++.   ...++|+|+.+|.++..   ...+|++++
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~---~~~~rv~~~~gD~~~~~---~~~~D~~~~  250 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSF---QEEEQIDFQEGDFFKDP---LPEADLYIL  250 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-----CCSEEEEESCTTTSC---CCCCSEEEE
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhh---cccCceeeecCccccCC---CCCceEEEe
Confidence            567999999999999999998876667888887 8899999998764   34579999999987642   346799887

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.90  E-value=2.2e-05  Score=77.64  Aligned_cols=69  Identities=22%  Similarity=0.271  Sum_probs=57.7

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCC
Q 044572          301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPP  379 (457)
Q Consensus       301 ~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPP  379 (457)
                      +|||||||.|.+++-+-. +|+.-|.++|+++.|++..+.|..         ..++.+|+.+.........|+++.-||
T Consensus         2 kvidLFsG~GG~~~G~~~-aG~~~v~a~e~d~~a~~ty~~N~~---------~~~~~~DI~~i~~~~~~~~D~l~ggpP   70 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQK-AGFRIICANEYDKSIWKTYESNHS---------AKLIKGDISKISSDEFPKCDGIIGGPP   70 (331)
T ss_dssp             EEEEESCTTCHHHHHHHH-TTCEEEEEEECCTTTHHHHHHHCC---------SEEEESCGGGCCGGGSCCCSEEECCCC
T ss_pred             eEEEeCcCccHHHHHHHH-CCCEEEEEEeCCHHHHHHHHHHCC---------CCcccCChhhCCHhhCCcccEEEecCC
Confidence            699999999999998876 578889999999999998888742         157889998765544567999999999

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=97.87  E-value=3.9e-05  Score=76.41  Aligned_cols=97  Identities=14%  Similarity=0.075  Sum_probs=62.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.++..+++.....+++++|+ +.++.  +++++..  +..++++|+.+|+++..   . .||+|++.
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~--~~~~~v~~~~~d~~~~~---p-~~D~v~~~  254 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAP--DVAGRWKVVEGDFLREV---P-HADVHVLK  254 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCG--GGTTSEEEEECCTTTCC---C-CCSEEEEE
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--ccccccc--CCCCCeEEEecCCCCCC---C-CCcEEEEe
Confidence            578999999999999999998665568999999 45544  3332221  23457999999997432   2 79999883


Q ss_pred             CCCCCcc----HHHHHHHHhcCCCCcEEEE
Q 044572          378 PPRKGLD----SSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       378 PPR~Gl~----~~v~~~l~~~~~~~~ivyv  403 (457)
                      ---....    ..+++.+.+.-++++.+++
T Consensus       255 ~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i  284 (348)
T 3lst_A          255 RILHNWGDEDSVRILTNCRRVMPAHGRVLV  284 (348)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred             hhccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            3211111    2455555554345555544

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=97.86  E-value=8.9e-06  Score=83.00  Aligned_cols=111  Identities=8%  Similarity=-0.030  Sum_probs=67.9

Q ss_pred             HHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572          286 DILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE  363 (457)
Q Consensus       286 ~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~  363 (457)
                      ..+.+.+.+.+.  ++.+|||+|||+|.++..++...  .+|+|||+|+.+++.|+++  .  ... ....|..+++...
T Consensus        93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~--~--~~~-~~~~~~~~~~~~l  165 (416)
T 4e2x_A           93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREK--G--IRV-RTDFFEKATADDV  165 (416)
T ss_dssp             HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTT--T--CCE-ECSCCSHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHc--C--CCc-ceeeechhhHhhc
Confidence            444455555443  67899999999999999999753  3999999999999988865  1  010 0111222232221


Q ss_pred             cccccCCccEEEECCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572          364 PLSWLVGSDVLVVDPPRKGL--DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       364 ~~~~~~~~D~vi~DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      . ...+.||+|++.---.-+  ...+++.+.++-.++++++++
T Consensus       166 ~-~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~  207 (416)
T 4e2x_A          166 R-RTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFE  207 (416)
T ss_dssp             H-HHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             c-cCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence            1 113679999875331101  124566666554477777775

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.85  E-value=2.4e-05  Score=79.22  Aligned_cols=102  Identities=13%  Similarity=0.036  Sum_probs=66.4

Q ss_pred             HHHHHh-hCCCCCeEEEEccc------ccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572          289 LRKLQK-YVPYGASVTDLYAG------AGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN  360 (457)
Q Consensus       289 ~~~i~~-~~~~~~~vLDl~cG------~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~  360 (457)
                      |+.+.+ +..++.+|||+|||      +|..++.+++.. ...+|+|||+|+.+.       ..     ..+++|+++|+
T Consensus       206 Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~~-----~~rI~fv~GDa  273 (419)
T 3sso_A          206 YDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------VD-----ELRIRTIQGDQ  273 (419)
T ss_dssp             HHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------GC-----BTTEEEEECCT
T ss_pred             HHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------hc-----CCCcEEEEecc
Confidence            444433 22357899999999      888888888642 345999999999972       11     25899999999


Q ss_pred             CcCccc-----ccCCccEEEECCCCCCccH---HHHHHHHhcCCCCcEEEEe
Q 044572          361 SIEPLS-----WLVGSDVLVVDPPRKGLDS---SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       361 ~~~~~~-----~~~~~D~vi~DPPR~Gl~~---~v~~~l~~~~~~~~ivyvs  404 (457)
                      .+....     ..+.||+|+.|=-.  ...   ..++.+.+.-++++++.++
T Consensus       274 ~dlpf~~~l~~~d~sFDlVisdgsH--~~~d~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          274 NDAEFLDRIARRYGPFDIVIDDGSH--INAHVRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             TCHHHHHHHHHHHCCEEEEEECSCC--CHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cccchhhhhhcccCCccEEEECCcc--cchhHHHHHHHHHHhcCCCeEEEEE
Confidence            874211     13689999987321  112   2344444433477777775

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.83  E-value=2.6e-05  Score=74.73  Aligned_cols=106  Identities=15%  Similarity=0.012  Sum_probs=70.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhC-------C-----CCEEEEEeCCH---HHHH-----------HHHHHHhhCC-----
Q 044572          298 YGASVTDLYAGAGVIGLSLAAAR-------K-----CRSVKCVEINK---ESQL-----------SFEKTVSRLP-----  346 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~-------~-----~~~V~gVE~~~---~av~-----------~A~~Na~~~~-----  346 (457)
                      +..+|||+|+|+|.-++.++...       .     ..+++++|..+   +.++           .|+++++...     
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            34689999999999887766431       1     14899999887   3333           5666655310     


Q ss_pred             ------CCCCCcEEEEEccCCcCcccccC----CccEEEECC--CCCC---ccHHHHHHHHhcCCCCcEEEE
Q 044572          347 ------KSVDGNISWHNADNSIEPLSWLV----GSDVLVVDP--PRKG---LDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       347 ------~~~~~nv~~~~~d~~~~~~~~~~----~~D~vi~DP--PR~G---l~~~v~~~l~~~~~~~~ivyv  403 (457)
                            .....+++++.||+.+.+..+..    .||+|++|+  |...   -..++++.+.++..+++++..
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                  01235788999999886655432    799999998  5433   245677777776556666554

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.83  E-value=3.8e-05  Score=70.52  Aligned_cols=113  Identities=17%  Similarity=0.167  Sum_probs=70.4

Q ss_pred             HHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc
Q 044572          287 ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS  366 (457)
Q Consensus       287 ~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~  366 (457)
                      .+++.+... .++.+|||+|||+|.++..++     .+|+|+|+++.                  +++++.+|+.+... 
T Consensus        57 ~~~~~l~~~-~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~------------------~~~~~~~d~~~~~~-  111 (215)
T 2zfu_A           57 RIARDLRQR-PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL------------------DPRVTVCDMAQVPL-  111 (215)
T ss_dssp             HHHHHHHTS-CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS------------------STTEEESCTTSCSC-
T ss_pred             HHHHHHhcc-CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC------------------CceEEEeccccCCC-
Confidence            344544432 467899999999999998774     38999999987                  23578888876432 


Q ss_pred             ccCCccEEEECCCCCC-ccHHHHHHHHhcCCCCcEEEEeccCCCCCch-hchhhHHHHHHHhcc
Q 044572          367 WLVGSDVLVVDPPRKG-LDSSLVHALQSIGSAERKAKSLSESSSSMVK-EEKRPWILRAKEASV  428 (457)
Q Consensus       367 ~~~~~D~vi~DPPR~G-l~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~-~~~~~~~~~~~~~~~  428 (457)
                      ..+.||+|++...-.. -...+++.+.+.-.+++.++++.    .... .....|..++..++-
T Consensus       112 ~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~----~~~~~~~~~~~~~~l~~~Gf  171 (215)
T 2zfu_A          112 EDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAE----VSSRFEDVRTFLRAVTKLGF  171 (215)
T ss_dssp             CTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEE----CGGGCSCHHHHHHHHHHTTE
T ss_pred             CCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEE----cCCCCCCHHHHHHHHHHCCC
Confidence            1357999998654321 11345555555434666666641    1111 234566666666653

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.80  E-value=6.2e-05  Score=80.64  Aligned_cols=98  Identities=13%  Similarity=-0.002  Sum_probs=66.1

Q ss_pred             CCeEEEEcccccHH---HHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEE
Q 044572          299 GASVTDLYAGAGVI---GLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVL  374 (457)
Q Consensus       299 ~~~vLDl~cG~G~~---sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~v  374 (457)
                      +..|||+|||+|.+   ++.+++..+. -+|+|||.|+.|. .|++..+.|  +..++|+++++|++++.  ..+++|+|
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~-~a~~~v~~N--~~~dkVtVI~gd~eev~--LPEKVDII  432 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV-VTLENWQFE--EWGSQVTVVSSDMREWV--APEKADII  432 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH-HHHHHHHHH--TTGGGEEEEESCTTTCC--CSSCEEEE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH-HHHHHHHhc--cCCCeEEEEeCcceecc--CCcccCEE
Confidence            35799999999988   5555554321 1689999998654 677777764  34578999999998863  23689999


Q ss_pred             EECCCC-CCccH---HHHHHHHhcCCCCcEE
Q 044572          375 VVDPPR-KGLDS---SLVHALQSIGSAERKA  401 (457)
Q Consensus       375 i~DPPR-~Gl~~---~v~~~l~~~~~~~~iv  401 (457)
                      |...== .++.+   +++.+..+...+++++
T Consensus       433 VSEwMG~fLl~E~mlevL~Ardr~LKPgGim  463 (637)
T 4gqb_A          433 VSELLGSFADNELSPECLDGAQHFLKDDGVS  463 (637)
T ss_dssp             ECCCCBTTBGGGCHHHHHHHHGGGEEEEEEE
T ss_pred             EEEcCcccccccCCHHHHHHHHHhcCCCcEE
Confidence            988763 23222   4555544443344443

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=97.72  E-value=0.00011  Score=72.94  Aligned_cols=133  Identities=14%  Similarity=0.157  Sum_probs=80.4

Q ss_pred             eEEEEcccccHHHHHHHhhCCC--CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc--CCccEEEE
Q 044572          301 SVTDLYAGAGVIGLSLAAARKC--RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL--VGSDVLVV  376 (457)
Q Consensus       301 ~vLDl~cG~G~~sl~lA~~~~~--~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~--~~~D~vi~  376 (457)
                      +++|||||.|.+++.+... |.  ..|.++|+++.|++..+.|...        ..++.+|+.+......  ..+|+++.
T Consensus         5 ~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~~~--------~~~~~~DI~~~~~~~~~~~~~D~l~g   75 (333)
T 4h0n_A            5 KILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNFPE--------TNLLNRNIQQLTPQVIKKWNVDTILM   75 (333)
T ss_dssp             EEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCTT--------SCEECCCGGGCCHHHHHHTTCCEEEE
T ss_pred             EEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhCCC--------CceeccccccCCHHHhccCCCCEEEe
Confidence            6999999999999988764 44  5689999999999999888532        2457788877543222  26899999


Q ss_pred             CCCCC---------C-------ccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccccccccC-CCCC
Q 044572          377 DPPRK---------G-------LDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTN-SENQ  439 (457)
Q Consensus       377 DPPR~---------G-------l~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  439 (457)
                      .||-.         |       +-.++++.+..++. .+++.++--...-+ ....+.++..+...+..+..... ..+.
T Consensus        76 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~-P~~~vlENV~gl~~-~~~~~~i~~~l~~~GY~v~~~vl~a~~~  153 (333)
T 4h0n_A           76 SPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDN-VDYILMENVKGFEN-STVRNLFIDKLKECNFIYQEFLLCPSTV  153 (333)
T ss_dssp             CCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTT-CCEEEEEECTTGGG-SHHHHHHHHHHHHTTEEEEEEEECTTTT
T ss_pred             cCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcC-CCEEEEecchhhhh-hhHHHHHHHHHHhCCCeEEEEEecHHHc
Confidence            99932         2       22245555555532 45666651111111 11234555555554444432222 1334


Q ss_pred             CCCCc
Q 044572          440 SLPQT  444 (457)
Q Consensus       440 ~~p~~  444 (457)
                      ..||.
T Consensus       154 GvPQ~  158 (333)
T 4h0n_A          154 GVPNS  158 (333)
T ss_dssp             TCSCC
T ss_pred             CCCcc
Confidence            47774

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.68  E-value=7.6e-05  Score=74.36  Aligned_cols=67  Identities=10%  Similarity=0.099  Sum_probs=53.1

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++.+|||+|||+|.++..+++.....+|+++|+ +.+++.|++         ..+++|+.+|+++..    ..||+|++
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~~~----p~~D~v~~  252 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG---------SNNLTYVGGDMFTSI----PNADAVLL  252 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------BTTEEEEECCTTTCC----CCCSEEEE
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc---------CCCcEEEeccccCCC----CCccEEEe
Confidence            3568999999999999999998654458999999 999876653         135899999987632    24999988


Q ss_pred             C
Q 044572          377 D  377 (457)
Q Consensus       377 D  377 (457)
                      .
T Consensus       253 ~  253 (352)
T 1fp2_A          253 K  253 (352)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.64  E-value=0.00021  Score=71.83  Aligned_cols=66  Identities=11%  Similarity=0.075  Sum_probs=52.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      +..+|||+|||+|.++..+++.....+++++|+ +.+++.|++         ..+++|+.+|+++...   .. |+|++.
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~~~p---~~-D~v~~~  268 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA---------FSGVEHLGGDMFDGVP---KG-DAIFIK  268 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTTCCC---CC-SEEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh---------cCCCEEEecCCCCCCC---CC-CEEEEe
Confidence            468999999999999999998765568999999 888765542         1579999999986322   23 998873

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=97.64  E-value=8.2e-05  Score=72.62  Aligned_cols=73  Identities=14%  Similarity=-0.007  Sum_probs=57.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCE--EEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc---CCcc
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRS--VKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSD  372 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~--V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~---~~~D  372 (457)
                      ..-+++|||||.|++++.+.. .|+..  |.++|+++.|++..+.|..        +..++.+|+.+......   ..+|
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~-aG~~~~~v~a~E~d~~a~~ty~~N~~--------~~~~~~~DI~~i~~~~i~~~~~~D   85 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKD-LGIQVDRYIASEVCEDSITVGMVRHQ--------GKIMYVGDVRSVTQKHIQEWGPFD   85 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHH-TTBCEEEEEEECCCHHHHHHHHHHTT--------TCEEEECCGGGCCHHHHHHTCCCS
T ss_pred             CCCEEEEeCcCccHHHHHHHH-CCCccceEEEEECCHHHHHHHHHhCC--------CCceeCCChHHccHHHhcccCCcC
Confidence            456899999999999998886 56666  7999999999998887742        23578899987643221   3689


Q ss_pred             EEEECCC
Q 044572          373 VLVVDPP  379 (457)
Q Consensus       373 ~vi~DPP  379 (457)
                      +++..||
T Consensus        86 ll~ggpP   92 (295)
T 2qrv_A           86 LVIGGSP   92 (295)
T ss_dssp             EEEECCC
T ss_pred             EEEecCC
Confidence            9999999

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.54  E-value=0.00045  Score=69.01  Aligned_cols=107  Identities=14%  Similarity=0.110  Sum_probs=74.7

Q ss_pred             CCCHHHHHHHHHHHHhhCC-----CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcE
Q 044572          279 QANTRAFDILLRKLQKYVP-----YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNI  353 (457)
Q Consensus       279 Q~n~~~~~~l~~~i~~~~~-----~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv  353 (457)
                      -.|...++.+++.+.- .+     ++..|||+|.|.|++|..|+...++++|++||+++..+...++.. .     .+|+
T Consensus        35 L~d~~i~~~Iv~~~~l-~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~-----~~~l  107 (353)
T 1i4w_A           35 LWNPTVYNKIFDKLDL-TKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E-----GSPL  107 (353)
T ss_dssp             BCCHHHHHHHHHHHCG-GGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T-----TSSC
T ss_pred             cCCHHHHHHHHHhccC-CcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c-----CCCE
Confidence            3466666666665431 11     258899999999999999997644679999999999998888765 2     2578


Q ss_pred             EEEEccCCcCc--ccccCC----------------ccEEEECCCCCCccHHHHHHHH
Q 044572          354 SWHNADNSIEP--LSWLVG----------------SDVLVVDPPRKGLDSSLVHALQ  392 (457)
Q Consensus       354 ~~~~~d~~~~~--~~~~~~----------------~D~vi~DPPR~Gl~~~v~~~l~  392 (457)
                      +++.+|+.++-  ..+...                .-.||.|-|+..-.+-+.+.|.
T Consensus       108 ~ii~~D~l~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~vvaNLPYnIstpil~~ll~  164 (353)
T 1i4w_A          108 QILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLS  164 (353)
T ss_dssp             EEECSCTTCHHHHHHHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHH
T ss_pred             EEEECCccchhhHHHhhcccccccccccccccCCCceEEEEECCCchHHHHHHHHHH
Confidence            99999997642  111111                1179999999765554555444

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.53  E-value=0.00027  Score=70.93  Aligned_cols=65  Identities=14%  Similarity=0.066  Sum_probs=51.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      +..+|||+|||+|.++..+++.....+++++|+ +.+++.|++         ..+++|+.+|+++...   .. |+|++
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~~~p---~~-D~v~~  265 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ---------FPGVTHVGGDMFKEVP---SG-DTILM  265 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTTCCC---CC-SEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh---------cCCeEEEeCCcCCCCC---CC-CEEEe
Confidence            568999999999999999998765568999999 888765542         1579999999986322   23 99987

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=97.53  E-value=0.00011  Score=72.80  Aligned_cols=75  Identities=12%  Similarity=0.221  Sum_probs=57.5

Q ss_pred             CCeEEEEcccccHHHHHHHhhCC--CCEE-EEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc--CCccE
Q 044572          299 GASVTDLYAGAGVIGLSLAAARK--CRSV-KCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL--VGSDV  373 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~--~~~V-~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~--~~~D~  373 (457)
                      .-+++|||||.|.+++.+.. .|  +..| .++|+++.|++..+.|...         .++++|+.+......  ..+|+
T Consensus        10 ~~~vidLFaG~GG~~~G~~~-aG~~~~~v~~a~e~d~~a~~ty~~N~~~---------~~~~~DI~~~~~~~i~~~~~Di   79 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYER-SSININATFIPFDINEIANKIYSKNFKE---------EVQVKNLDSISIKQIESLNCNT   79 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHH-SSCCCCEEEEEECCCHHHHHHHHHHHCC---------CCBCCCTTTCCHHHHHHTCCCE
T ss_pred             CCEEEEECCChhHHHHHHHH-cCCCceEEEEEEECCHHHHHHHHHHCCC---------CcccCChhhcCHHHhccCCCCE
Confidence            45899999999999999886 45  3677 8999999999999998642         156788877543222  26899


Q ss_pred             EEECCCCCCc
Q 044572          374 LVVDPPRKGL  383 (457)
Q Consensus       374 vi~DPPR~Gl  383 (457)
                      ++..||-.+.
T Consensus        80 l~ggpPCQ~f   89 (327)
T 3qv2_A           80 WFMSPPCQPY   89 (327)
T ss_dssp             EEECCCCTTC
T ss_pred             EEecCCccCc
Confidence            9999995444

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.53  E-value=0.00022  Score=71.54  Aligned_cols=92  Identities=9%  Similarity=-0.030  Sum_probs=62.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.++..+++.....+++++|+ +.+++.|++         ..+++++.+|+++..    ..||+|++.
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~~~----~~~D~v~~~  274 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP---------LSGIEHVGGDMFASV----PQGDAMILK  274 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTTCC----CCEEEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh---------cCCCEEEeCCcccCC----CCCCEEEEe
Confidence            568999999999999999998765458999999 888876542         146999999997632    238999884


Q ss_pred             CCCCCcc-H---HHHHHHHhcCCCCcEEEE
Q 044572          378 PPRKGLD-S---SLVHALQSIGSAERKAKS  403 (457)
Q Consensus       378 PPR~Gl~-~---~v~~~l~~~~~~~~ivyv  403 (457)
                      ---.-.. .   .+++.+.+.-++++.+++
T Consensus       275 ~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i  304 (372)
T 1fp1_D          275 AVCHNWSDEKCIEFLSNCHKALSPNGKVII  304 (372)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            3211111 1   344555443335555554

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.47  E-value=0.00021  Score=71.32  Aligned_cols=68  Identities=10%  Similarity=0.042  Sum_probs=53.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.++..+++.....+++++|+ +.+++.|++         ..+++++.+|+++..    ..||+|++.
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~~~----~~~D~v~~~  258 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG---------NENLNFVGGDMFKSI----PSADAVLLK  258 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC---------CSSEEEEECCTTTCC----CCCSEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc---------CCCcEEEeCccCCCC----CCceEEEEc
Confidence            568999999999999999998754458999999 788765442         145999999997621    359999885


Q ss_pred             CC
Q 044572          378 PP  379 (457)
Q Consensus       378 PP  379 (457)
                      -.
T Consensus       259 ~v  260 (358)
T 1zg3_A          259 WV  260 (358)
T ss_dssp             SC
T ss_pred             cc
Confidence            43

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.35  E-value=0.00016  Score=71.34  Aligned_cols=87  Identities=13%  Similarity=-0.020  Sum_probs=65.2

Q ss_pred             HHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572          287 ILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE  363 (457)
Q Consensus       287 ~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~  363 (457)
                      .|++.+++++.  +|..++|+.+|.|.-+..++...+ ..+|+|+|.+++|++.|+ ++      ..+++++++++..+.
T Consensus        44 VLl~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL------~~~Rv~lv~~nF~~l  116 (347)
T 3tka_A           44 VLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI------DDPRFSIIHGPFSAL  116 (347)
T ss_dssp             TTTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC------CCTTEEEEESCGGGH
T ss_pred             ccHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh------cCCcEEEEeCCHHHH
Confidence            45566666653  689999999999999999997643 469999999999999884 22      136899999987654


Q ss_pred             cccc-----cCCccEEEECCCC
Q 044572          364 PLSW-----LVGSDVLVVDPPR  380 (457)
Q Consensus       364 ~~~~-----~~~~D~vi~DPPR  380 (457)
                      ...+     .+.+|.|++|-..
T Consensus       117 ~~~L~~~g~~~~vDgILfDLGV  138 (347)
T 3tka_A          117 GEYVAERDLIGKIDGILLDLGV  138 (347)
T ss_dssp             HHHHHHTTCTTCEEEEEEECSC
T ss_pred             HHHHHhcCCCCcccEEEECCcc
Confidence            2211     1258999998774

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=97.25  E-value=0.00025  Score=73.76  Aligned_cols=75  Identities=24%  Similarity=0.220  Sum_probs=57.2

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--------------
Q 044572          300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--------------  365 (457)
Q Consensus       300 ~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--------------  365 (457)
                      -+++|||||.|++++-+.. .|+..|.++|+++.|++..+.|...     ..+..++++|+.+...              
T Consensus        89 ~~viDLFaG~GGlslG~~~-aG~~~v~avE~d~~A~~ty~~N~~~-----~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~  162 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFES-IGGQCVFTSEWNKHAVRTYKANHYC-----DPATHHFNEDIRDITLSHQEGVSDEAAAEH  162 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHT-TTEEEEEEECCCHHHHHHHHHHSCC-----CTTTCEEESCTHHHHCTTCTTSCHHHHHHH
T ss_pred             ceEEEecCCccHHHHHHHH-CCCEEEEEEeCCHHHHHHHHHhccc-----CCCcceeccchhhhhhccccccchhhHHhh
Confidence            4799999999999999876 5677799999999999998888532     1233567788865431              


Q ss_pred             --cccCCccEEEECCCC
Q 044572          366 --SWLVGSDVLVVDPPR  380 (457)
Q Consensus       366 --~~~~~~D~vi~DPPR  380 (457)
                        .....+|+++.-||-
T Consensus       163 i~~~~~~~Dvl~gGpPC  179 (482)
T 3me5_A          163 IRQHIPEHDVLLAGFPC  179 (482)
T ss_dssp             HHHHSCCCSEEEEECCC
T ss_pred             hhhcCCCCCEEEecCCC
Confidence              112468999999993

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.20  E-value=0.00051  Score=68.71  Aligned_cols=94  Identities=15%  Similarity=0.100  Sum_probs=62.9

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      +.+|.++|||||..|.++..++++++  +|+|||..+-.     ..+..     ..+|+++++|++..... ...+|+|+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~--~V~aVD~~~l~-----~~l~~-----~~~V~~~~~d~~~~~~~-~~~~D~vv  275 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNM--WVYSVDNGPMA-----QSLMD-----TGQVTWLREDGFKFRPT-RSNISWMV  275 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTC--EEEEECSSCCC-----HHHHT-----TTCEEEECSCTTTCCCC-SSCEEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCC--EEEEEEhhhcC-----hhhcc-----CCCeEEEeCccccccCC-CCCcCEEE
Confidence            45799999999999999999998643  99999976421     11222     25799999999886543 25799999


Q ss_pred             ECCCC--CCccHHHHHHHHhcCCCCcEEEE
Q 044572          376 VDPPR--KGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       376 ~DPPR--~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      .|=--  .+...-+.+.+... ..++.|+.
T Consensus       276 sDm~~~p~~~~~l~~~wl~~~-~~~~aI~~  304 (375)
T 4auk_A          276 CDMVEKPAKVAALMAQWLVNG-WCRETIFN  304 (375)
T ss_dssp             ECCSSCHHHHHHHHHHHHHTT-SCSEEEEE
T ss_pred             EcCCCChHHhHHHHHHHHhcc-ccceEEEE
Confidence            98642  12222233334333 24555554

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.02  E-value=0.00067  Score=66.94  Aligned_cols=47  Identities=17%  Similarity=0.171  Sum_probs=41.5

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      ..+|+.|||.|||+|+.++.+...+  ++.+|+|+++.+++.|+++++.
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~~~g--r~~ig~e~~~~~~~~~~~r~~~  296 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAERES--RKWISFEMKPEYVAASAFRFLD  296 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHGGGSC
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence            3579999999999999999888753  5999999999999999988765

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=96.95  E-value=0.0021  Score=59.95  Aligned_cols=89  Identities=18%  Similarity=0.043  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHhh-CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEc-cCC
Q 044572          284 AFDILLRKLQKY-VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA-DNS  361 (457)
Q Consensus       284 ~~~~l~~~i~~~-~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~-d~~  361 (457)
                      .+-+|.+....+ +.++.+||||||+.|.++..++...++++|+|+|+-..-.+.=+ ..+.   -+-+.|+|+++ |++
T Consensus        63 a~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s---~gwn~v~fk~gvDv~  138 (267)
T 3p8z_A           63 GSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMST---YGWNIVKLMSGKDVF  138 (267)
T ss_dssp             HHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCC---TTTTSEEEECSCCGG
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhh---cCcCceEEEecccee
Confidence            334554444333 45788999999999999999998888899999999765431000 0011   12346899999 986


Q ss_pred             cCcccccCCccEEEECCC
Q 044572          362 IEPLSWLVGSDVLVVDPP  379 (457)
Q Consensus       362 ~~~~~~~~~~D~vi~DPP  379 (457)
                      ....   ..+|+|+.|--
T Consensus       139 ~~~~---~~~DtllcDIg  153 (267)
T 3p8z_A          139 YLPP---EKCDTLLCDIG  153 (267)
T ss_dssp             GCCC---CCCSEEEECCC
T ss_pred             ecCC---ccccEEEEecC
Confidence            5432   46999999973

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.91  E-value=0.0011  Score=65.35  Aligned_cols=47  Identities=21%  Similarity=0.280  Sum_probs=40.3

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCH---HHHHHHHHHHhh
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK---ESQLSFEKTVSR  344 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~---~av~~A~~Na~~  344 (457)
                      ..+|+.|||.|||+|+.++.+....  ++.+|+|+++   ..++.|+++++.
T Consensus       240 ~~~~~~vlDpF~GsGtt~~aa~~~~--r~~ig~e~~~~~~~~~~~~~~Rl~~  289 (319)
T 1eg2_A          240 SHPGSTVLDFFAGSGVTARVAIQEG--RNSICTDAAPVFKEYYQKQLTFLQD  289 (319)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHHHT--CEEEEEESSTHHHHHHHHHHHHC--
T ss_pred             CCCCCEEEecCCCCCHHHHHHHHcC--CcEEEEECCccHHHHHHHHHHHHHH
Confidence            3479999999999999999988763  5999999999   999999988765

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.75  E-value=0.0022  Score=61.95  Aligned_cols=118  Identities=9%  Similarity=-0.019  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhC-----CCCEEEEEeCCH----------------------
Q 044572          282 TRAFDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAAR-----KCRSVKCVEINK----------------------  332 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~-----~~~~V~gVE~~~----------------------  332 (457)
                      ......|+..+....  .....||++|+..|.-++.+|...     ..++|+++|..+                      
T Consensus        88 ~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~  167 (282)
T 2wk1_A           88 IKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRN  167 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCccccccccccccccccccc
Confidence            344444444443322  235689999999999998887531     135899999742                      


Q ss_pred             ----HHHHHHHHHHhhCCCCC-CCcEEEEEccCCcCccccc-CCccEEEECCCCCCccH---HHHHHHHhcCCCCcEEEE
Q 044572          333 ----ESQLSFEKTVSRLPKSV-DGNISWHNADNSIEPLSWL-VGSDVLVVDPPRKGLDS---SLVHALQSIGSAERKAKS  403 (457)
Q Consensus       333 ----~av~~A~~Na~~~~~~~-~~nv~~~~~d~~~~~~~~~-~~~D~vi~DPPR~Gl~~---~v~~~l~~~~~~~~ivyv  403 (457)
                          ..++.+++|++..+  . .++|+++.||+.+.+.... ..+|+|++|=-   ...   ..++.+...-.++++|.+
T Consensus       168 ~~~~~~~~~ar~n~~~~g--l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~y~~~~~~Le~~~p~L~pGGiIv~  242 (282)
T 2wk1_A          168 SVLAVSEEEVRRNFRNYD--LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---LYESTWDTLTNLYPKVSVGGYVIV  242 (282)
T ss_dssp             HHHCCCHHHHHHHHHHTT--CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---SHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ccchhHHHHHHHHHHHcC--CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---ccccHHHHHHHHHhhcCCCEEEEE
Confidence                14677899998843  3 3789999999987666543 57999999953   222   334444444347777776


Q ss_pred             e
Q 044572          404 L  404 (457)
Q Consensus       404 s  404 (457)
                      -
T Consensus       243 D  243 (282)
T 2wk1_A          243 D  243 (282)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=96.74  E-value=0.00086  Score=59.34  Aligned_cols=86  Identities=9%  Similarity=-0.066  Sum_probs=57.9

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc--ccCCccE
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS--WLVGSDV  373 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~--~~~~~D~  373 (457)
                      +.+|.+|||++||.                ++||+++.|++.|++++..       +++++++|+.+....  ..+.||+
T Consensus        10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~-------~~~~~~~d~~~~~~~~~~~~~fD~   66 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGN-------EGRVSVENIKQLLQSAHKESSFDI   66 (176)
T ss_dssp             CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTT-------TSEEEEEEGGGGGGGCCCSSCEEE
T ss_pred             CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhccc-------CcEEEEechhcCccccCCCCCEeE
Confidence            45789999999986                2399999999999987532       479999999875431  2357999


Q ss_pred             EEECCCCCC---ccHHHHHHHHhcCCCCcEEEEe
Q 044572          374 LVVDPPRKG---LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       374 vi~DPPR~G---l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+..=--.-   -...+++.+.+.-.+++.++++
T Consensus        67 V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~  100 (176)
T 2ld4_A           67 ILSGLVPGSTTLHSAEILAEIARILRPGGCLFLK  100 (176)
T ss_dssp             EEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEECChhhhcccCHHHHHHHHHHHCCCCEEEEEE
Confidence            998421100   0145666665544466666664

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=96.72  E-value=0.004  Score=62.47  Aligned_cols=105  Identities=15%  Similarity=0.000  Sum_probs=73.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC-C----CCCcEEEEEccCCcCcccc---cC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK-S----VDGNISWHNADNSIEPLSW---LV  369 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~-~----~~~nv~~~~~d~~~~~~~~---~~  369 (457)
                      +.++||=+|.|.|.....+.+. ...+|+.||++++.++.+++-...... .    ..++++++.+|+.+++.+.   .+
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            4689999999999999998875 458999999999999999986422100 0    1246899999998876532   25


Q ss_pred             CccEEEECCCC---C----Ccc-----HHHHHHHHhcCCCCcEEEE
Q 044572          370 GSDVLVVDPPR---K----GLD-----SSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       370 ~~D~vi~DPPR---~----Gl~-----~~v~~~l~~~~~~~~ivyv  403 (457)
                      +||+||+|.+-   .    |..     .+..+.+.+.-.+++++..
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~  329 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFT  329 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEE
Confidence            79999999532   1    222     2445555554446777665

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.55  E-value=0.0042  Score=59.79  Aligned_cols=91  Identities=15%  Similarity=0.122  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHh-hCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEc-cCC
Q 044572          284 AFDILLRKLQK-YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA-DNS  361 (457)
Q Consensus       284 ~~~~l~~~i~~-~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~-d~~  361 (457)
                      .+-+|...... .+.++.+||||||+.|.++..++...++++|+|+|+-..--+.=+ ..+.++   -..|.|+.+ |+.
T Consensus        79 ~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~---w~lV~~~~~~Dv~  154 (321)
T 3lkz_A           79 GTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYG---WNIVTMKSGVDVF  154 (321)
T ss_dssp             HHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTT---GGGEEEECSCCTT
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcC---CcceEEEeccCHh
Confidence            33444444333 245778999999999999999998888889999999765221000 001111   123788888 775


Q ss_pred             cCcccccCCccEEEECCCCC
Q 044572          362 IEPLSWLVGSDVLVVDPPRK  381 (457)
Q Consensus       362 ~~~~~~~~~~D~vi~DPPR~  381 (457)
                      ....   ..+|+|++|=-.+
T Consensus       155 ~l~~---~~~D~ivcDigeS  171 (321)
T 3lkz_A          155 YRPS---ECCDTLLCDIGES  171 (321)
T ss_dssp             SSCC---CCCSEEEECCCCC
T ss_pred             hCCC---CCCCEEEEECccC
Confidence            5432   4699999998744

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.53  E-value=0.0059  Score=62.16  Aligned_cols=64  Identities=14%  Similarity=0.130  Sum_probs=50.4

Q ss_pred             CCCCeEEEEcccccHHHHHHH-hhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCC-CcEEEEEccC
Q 044572          297 PYGASVTDLYAGAGVIGLSLA-AARK-CRSVKCVEINKESQLSFEKTVSRLPKSVD-GNISWHNADN  360 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA-~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~-~nv~~~~~d~  360 (457)
                      .++..|+|+||+.|.+++.++ +..+ .++|+++|-++.+.+..++|++...|+.. .|++++..-+
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al  291 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA  291 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence            468899999999999999988 4443 36999999999999999999987211334 6777776444

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=96.40  E-value=0.0012  Score=63.38  Aligned_cols=93  Identities=15%  Similarity=0.041  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHhh-CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEc--cC
Q 044572          284 AFDILLRKLQKY-VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA--DN  360 (457)
Q Consensus       284 ~~~~l~~~i~~~-~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~--d~  360 (457)
                      .+-+|.+...++ +.++.+|||||||.|.++..++...++.+|+|+|+...+...+... +    ....++.....  |+
T Consensus        75 AAfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~----~~g~~ii~~~~~~dv  149 (282)
T 3gcz_A           75 GSAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-T----TLGWNLIRFKDKTDV  149 (282)
T ss_dssp             HHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-C----BTTGGGEEEECSCCG
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-c----cCCCceEEeeCCcch
Confidence            445665555443 3578899999999999999998766778999999986642222110 0    01123333333  32


Q ss_pred             CcCcccccCCccEEEECC-CCCCcc
Q 044572          361 SIEPLSWLVGSDVLVVDP-PRKGLD  384 (457)
Q Consensus       361 ~~~~~~~~~~~D~vi~DP-PR~Gl~  384 (457)
                      ..+   ....+|+|+.|= |-.|..
T Consensus       150 ~~l---~~~~~DvVLSDmApnsG~~  171 (282)
T 3gcz_A          150 FNM---EVIPGDTLLCDIGESSPSI  171 (282)
T ss_dssp             GGS---CCCCCSEEEECCCCCCSCH
T ss_pred             hhc---CCCCcCEEEecCccCCCCh
Confidence            221   125799999995 336653

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=96.29  E-value=0.0017  Score=62.21  Aligned_cols=94  Identities=21%  Similarity=0.143  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhh-CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572          284 AFDILLRKLQKY-VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI  362 (457)
Q Consensus       284 ~~~~l~~~i~~~-~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~  362 (457)
                      .+-+|.+...+. +.++.+|||||||.|.++..++...++.+|+|+|+..+....    ... ......++..+.+++..
T Consensus        59 aA~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~----pi~-~~~~g~~ii~~~~~~dv  133 (277)
T 3evf_A           59 GTAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEK----PMN-VQSLGWNIITFKDKTDI  133 (277)
T ss_dssp             HHHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCC----CCC-CCBTTGGGEEEECSCCT
T ss_pred             HHHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccc----ccc-cCcCCCCeEEEecccee
Confidence            444555544442 346789999999999999998876567789999998543100    000 00001155556666532


Q ss_pred             CcccccCCccEEEECC-CCCCc
Q 044572          363 EPLSWLVGSDVLVVDP-PRKGL  383 (457)
Q Consensus       363 ~~~~~~~~~D~vi~DP-PR~Gl  383 (457)
                      ... ....+|+|+.|= |-.|.
T Consensus       134 ~~l-~~~~~DlVlsD~apnsG~  154 (277)
T 3evf_A          134 HRL-EPVKCDTLLCDIGESSSS  154 (277)
T ss_dssp             TTS-CCCCCSEEEECCCCCCSC
T ss_pred             hhc-CCCCccEEEecCccCcCc
Confidence            111 125799999996 33565

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=95.89  E-value=0.0067  Score=66.91  Aligned_cols=43  Identities=23%  Similarity=0.301  Sum_probs=35.4

Q ss_pred             CeEEEEcccccHHHHHHHhhCC-----CCEEEEEeCCHHHHHHHHHHH
Q 044572          300 ASVTDLYAGAGVIGLSLAAARK-----CRSVKCVEINKESQLSFEKTV  342 (457)
Q Consensus       300 ~~vLDl~cG~G~~sl~lA~~~~-----~~~V~gVE~~~~av~~A~~Na  342 (457)
                      -+|||||||.|++++-+...++     +.-|.+||+++.|++.-+.|.
T Consensus       213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            4799999999999887765321     457899999999999998884

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=95.84  E-value=0.0086  Score=67.30  Aligned_cols=72  Identities=14%  Similarity=0.179  Sum_probs=52.2

Q ss_pred             CeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC------------ccc
Q 044572          300 ASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE------------PLS  366 (457)
Q Consensus       300 ~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~------------~~~  366 (457)
                      -+++|||||.|++++-+.. +|. ..|.++|+++.|++..+.|..        +..++.+|+.++            ...
T Consensus       541 l~~iDLFaG~GGlslGl~~-AG~~~vv~avEid~~A~~ty~~N~p--------~~~~~~~DI~~l~~~~~~~di~~~~~~  611 (1002)
T 3swr_A          541 LRTLDVFSGCGGLSEGFHQ-AGISDTLWAIEMWDPAAQAFRLNNP--------GSTVFTEDCNILLKLVMAGETTNSRGQ  611 (1002)
T ss_dssp             EEEEEESCTTSHHHHHHHH-HTSEEEEEEECSSHHHHHHHHHHCT--------TSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred             CeEEEeccCccHHHHHHHH-CCCCceEEEEECCHHHHHHHHHhCC--------CCccccccHHHHhhhccchhhhhhhhh
Confidence            3799999999999998876 455 568899999999998888742        235566664321            111


Q ss_pred             -c--cCCccEEEECCCC
Q 044572          367 -W--LVGSDVLVVDPPR  380 (457)
Q Consensus       367 -~--~~~~D~vi~DPPR  380 (457)
                       +  ...+|+|+.-||-
T Consensus       612 ~lp~~~~vDll~GGpPC  628 (1002)
T 3swr_A          612 RLPQKGDVEMLCGGPPC  628 (1002)
T ss_dssp             BCCCTTTCSEEEECCCC
T ss_pred             hcccCCCeeEEEEcCCC
Confidence             1  1358999999993

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=95.45  E-value=0.015  Score=59.08  Aligned_cols=44  Identities=20%  Similarity=0.133  Sum_probs=36.3

Q ss_pred             CeEEEEcccccHHHHHHHhhCC-CCE----EEEEeCCHHHHHHHHHHHh
Q 044572          300 ASVTDLYAGAGVIGLSLAAARK-CRS----VKCVEINKESQLSFEKTVS  343 (457)
Q Consensus       300 ~~vLDl~cG~G~~sl~lA~~~~-~~~----V~gVE~~~~av~~A~~Na~  343 (457)
                      -+|+|||||.|++++.+-..+. ..-    |.++|+++.|++.-+.|..
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~   59 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS   59 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence            4799999999999988876431 234    9999999999999999875

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=95.11  E-value=0.022  Score=65.76  Aligned_cols=73  Identities=12%  Similarity=0.170  Sum_probs=52.3

Q ss_pred             CCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc------------c
Q 044572          299 GASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP------------L  365 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~------------~  365 (457)
                      .-+++|||||.|++++-+.. +|. .-|.++|+++.|++..+.|..        +..++.+|+.+..            .
T Consensus       851 ~l~viDLFsG~GGlslGfe~-AG~~~vv~avEid~~A~~ty~~N~p--------~~~~~~~DI~~l~~~~~~gdi~~~~~  921 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQ-AGISETLWAIEMWDPAAQAFRLNNP--------GTTVFTEDCNVLLKLVMAGEVTNSLG  921 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHH-TTSEEEEEEECCSHHHHHHHHHHCT--------TSEEECSCHHHHHHHHTTTCSBCSSC
T ss_pred             CceEEecccCccHHHHHHHH-CCCCceEEEEECCHHHHHHHHHhCC--------CCcEeeccHHHHhHhhhccchhhhhh
Confidence            34799999999999998876 565 568999999999998888742        2245555543211            0


Q ss_pred             c-c--cCCccEEEECCCC
Q 044572          366 S-W--LVGSDVLVVDPPR  380 (457)
Q Consensus       366 ~-~--~~~~D~vi~DPPR  380 (457)
                      . +  ...+|+|+.-||-
T Consensus       922 ~~lp~~~~vDvl~GGpPC  939 (1330)
T 3av4_A          922 QRLPQKGDVEMLCGGPPC  939 (1330)
T ss_dssp             CBCCCTTTCSEEEECCCC
T ss_pred             hhccccCccceEEecCCC
Confidence            1 1  1358999999993

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=93.87  E-value=0.073  Score=50.30  Aligned_cols=87  Identities=18%  Similarity=0.157  Sum_probs=51.8

Q ss_pred             HHHHHHHHh-hCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCC-Cc---EEEEEc-c
Q 044572          286 DILLRKLQK-YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVD-GN---ISWHNA-D  359 (457)
Q Consensus       286 ~~l~~~i~~-~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~-~n---v~~~~~-d  359 (457)
                      -+|.+...+ ++.+|.+||||||+-|..+..++...+...|.|..+..+.    .    ....... .+   +.|+++ |
T Consensus        60 yKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~----~----~~P~~~~~~Gv~~i~~~~G~D  131 (269)
T 2px2_A           60 AKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG----H----EEPMLMQSYGWNIVTMKSGVD  131 (269)
T ss_dssp             HHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT----S----CCCCCCCSTTGGGEEEECSCC
T ss_pred             HHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc----c----cCCCcccCCCceEEEeeccCC
Confidence            344433332 4568999999999999999999986333344555543331    0    0111111 22   355557 8


Q ss_pred             CCcCcccccCCccEEEECC-CCCCc
Q 044572          360 NSIEPLSWLVGSDVLVVDP-PRKGL  383 (457)
Q Consensus       360 ~~~~~~~~~~~~D~vi~DP-PR~Gl  383 (457)
                      +.+..   ...+|+|+.|- |..|.
T Consensus       132 f~~~~---~~~~DvVLSDMAPnSG~  153 (269)
T 2px2_A          132 VFYKP---SEISDTLLCDIGESSPS  153 (269)
T ss_dssp             GGGSC---CCCCSEEEECCCCCCSC
T ss_pred             ccCCC---CCCCCEEEeCCCCCCCc
Confidence            87632   23699999997 45553

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=93.39  E-value=0.075  Score=51.22  Aligned_cols=39  Identities=31%  Similarity=0.313  Sum_probs=33.5

Q ss_pred             hCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHH
Q 044572          295 YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE  333 (457)
Q Consensus       295 ~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~  333 (457)
                      .+.++.+||||||+.|.++..++...++.+|+|+|+...
T Consensus        78 l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~  116 (300)
T 3eld_A           78 YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIE  116 (300)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccc
Confidence            445789999999999999999997667778999999754

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=87.92  E-value=4.1  Score=39.53  Aligned_cols=100  Identities=12%  Similarity=0.120  Sum_probs=66.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhh---C-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC--cccccCCc
Q 044572          298 YGASVTDLYAGAGVIGLSLAAA---R-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWLVGS  371 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~---~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~--~~~~~~~~  371 (457)
                      .+++|| +-.|+|.+|..+++.   . |..+|++++.++.......+.+.      ..+++++.+|+.+.  +......+
T Consensus        20 ~~k~vl-VTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~------~~~v~~~~~Dl~d~~~l~~~~~~~   92 (344)
T 2gn4_A           20 DNQTIL-ITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN------DPRMRFFIGDVRDLERLNYALEGV   92 (344)
T ss_dssp             TTCEEE-EETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC------CTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCEEE-EECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc------CCCEEEEECCCCCHHHHHHHHhcC
Confidence            367777 667889999888753   2 44589999999887665554332      14689999999763  22234578


Q ss_pred             cEEEECCCCCCcc-----------------HHHHHHHHhcCCCCcEEEEec
Q 044572          372 DVLVVDPPRKGLD-----------------SSLVHALQSIGSAERKAKSLS  405 (457)
Q Consensus       372 D~vi~DPPR~Gl~-----------------~~v~~~l~~~~~~~~ivyvs~  405 (457)
                      |+||..-......                 ..++++..... .+++||+|+
T Consensus        93 D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~-v~~~V~~SS  142 (344)
T 2gn4_A           93 DICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNA-ISQVIALST  142 (344)
T ss_dssp             SEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-CSEEEEECC
T ss_pred             CEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEecC
Confidence            9998866433211                 13455555554 789999985

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=87.40  E-value=0.42  Score=46.63  Aligned_cols=95  Identities=17%  Similarity=0.072  Sum_probs=59.0

Q ss_pred             CCCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc---ccccCCcc
Q 044572          297 PYGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP---LSWLVGSD  372 (457)
Q Consensus       297 ~~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~---~~~~~~~D  372 (457)
                      .+|++||-.|+| +|.+++.+|+..|+ +|+++|.+++-.+.+++    ++   .+  ..+..+-.+..   .+..+.+|
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lG---a~--~~i~~~~~~~~~~~~~~~g~~d  234 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LG---AE--VAVNARDTDPAAWLQKEIGGAH  234 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TT---CS--EEEETTTSCHHHHHHHHHSSEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cC---CC--EEEeCCCcCHHHHHHHhCCCCC
Confidence            478999988885 48888889988776 89999999998887754    22   12  22322222211   11124688


Q ss_pred             EEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          373 VLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       373 ~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +||..-   |....+...+..+++.++++.+.
T Consensus       235 ~vid~~---g~~~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          235 GVLVTA---VSPKAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             EEEESS---CCHHHHHHHHHHEEEEEEEEECS
T ss_pred             EEEEeC---CCHHHHHHHHHHhccCCEEEEeC
Confidence            887653   22333445555566556666653

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=87.11  E-value=6.5  Score=35.47  Aligned_cols=95  Identities=13%  Similarity=0.055  Sum_probs=63.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcE-EEEEccCCcCcccccCCccE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNI-SWHNADNSIEPLSWLVGSDV  373 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv-~~~~~d~~~~~~~~~~~~D~  373 (457)
                      .+++|| +-.|+|.+|..+++.   .| .+|++++.+++.++...    .      .++ +++.+|+.+.+.+.....|+
T Consensus        20 ~~~~il-VtGatG~iG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~----~------~~~~~~~~~Dl~~~~~~~~~~~D~   87 (236)
T 3e8x_A           20 QGMRVL-VVGANGKVARYLLSELKNKG-HEPVAMVRNEEQGPELR----E------RGASDIVVANLEEDFSHAFASIDA   87 (236)
T ss_dssp             -CCEEE-EETTTSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHH----H------TTCSEEEECCTTSCCGGGGTTCSE
T ss_pred             CCCeEE-EECCCChHHHHHHHHHHhCC-CeEEEEECChHHHHHHH----h------CCCceEEEcccHHHHHHHHcCCCE
Confidence            467777 566788888877753   23 48999999987654332    1      246 88999987444444567899


Q ss_pred             EEECCCCCCc-------------cHHHHHHHHhcCCCCcEEEEec
Q 044572          374 LVVDPPRKGL-------------DSSLVHALQSIGSAERKAKSLS  405 (457)
Q Consensus       374 vi~DPPR~Gl-------------~~~v~~~l~~~~~~~~ivyvs~  405 (457)
                      ||..-....-             ...+++++.+.. .+++||+|+
T Consensus        88 vi~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~iv~~SS  131 (236)
T 3e8x_A           88 VVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRG-IKRFIMVSS  131 (236)
T ss_dssp             EEECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             EEECCCCCCCCCccccchhhHHHHHHHHHHHHHcC-CCEEEEEec
Confidence            9987653211             123566666664 789999985

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=86.02  E-value=2.1  Score=41.52  Aligned_cols=104  Identities=13%  Similarity=0.017  Sum_probs=58.6

Q ss_pred             CeEEEEcccccHHHHHHHh---h-CCCC--EEEEEeCCH--------HHHH-HHHHHHhhCCC--CCCCcEEEEEccCCc
Q 044572          300 ASVTDLYAGAGVIGLSLAA---A-RKCR--SVKCVEINK--------ESQL-SFEKTVSRLPK--SVDGNISWHNADNSI  362 (457)
Q Consensus       300 ~~vLDl~cG~G~~sl~lA~---~-~~~~--~V~gVE~~~--------~av~-~A~~Na~~~~~--~~~~nv~~~~~d~~~  362 (457)
                      -+|||+|=|+|.-.+....   . ....  +.+.+|..+        +... ..+.-......  +..-..++..||+.+
T Consensus        98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~  177 (308)
T 3vyw_A           98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK  177 (308)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred             cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence            4699999999985443321   1 1112  457777532        1111 11111111100  111235678899988


Q ss_pred             Cccccc-CCccEEEECC--CCCCc---cHHHHHHHHhcCCCCcEEEE
Q 044572          363 EPLSWL-VGSDVLVVDP--PRKGL---DSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       363 ~~~~~~-~~~D~vi~DP--PR~Gl---~~~v~~~l~~~~~~~~ivyv  403 (457)
                      .+.++. ..+|+|++|+  |+..-   +.++.+.+..+..+++.+..
T Consensus       178 ~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT  224 (308)
T 3vyw_A          178 RIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS  224 (308)
T ss_dssp             HGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred             HHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            776654 3699999998  65532   35788888877655555544

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=85.69  E-value=8.8  Score=35.94  Aligned_cols=78  Identities=14%  Similarity=0.082  Sum_probs=52.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC-c--ccc----
Q 044572          298 YGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE-P--LSW----  367 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~-~--~~~----  367 (457)
                      .++++| +-.|+|.+|..+|+.   .| .+|++++.+.+..+.+.+.++..   ...++.++..|+.+. .  ..+    
T Consensus        11 ~~k~vl-ITGas~GIG~~~a~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dl~~~~~~v~~~~~~~   85 (311)
T 3o26_A           11 KRRCAV-VTGGNKGIGFEICKQLSSNG-IMVVLTCRDVTKGHEAVEKLKNS---NHENVVFHQLDVTDPIATMSSLADFI   85 (311)
T ss_dssp             -CCEEE-ESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTT---TCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEE-EecCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhc---CCCceEEEEccCCCcHHHHHHHHHHH
Confidence            356666 555667777776653   33 48999999999887777766542   235799999999875 1  111    


Q ss_pred             ---cCCccEEEECCCC
Q 044572          368 ---LVGSDVLVVDPPR  380 (457)
Q Consensus       368 ---~~~~D~vi~DPPR  380 (457)
                         .+..|++|.+--.
T Consensus        86 ~~~~g~iD~lv~nAg~  101 (311)
T 3o26_A           86 KTHFGKLDILVNNAGV  101 (311)
T ss_dssp             HHHHSSCCEEEECCCC
T ss_pred             HHhCCCCCEEEECCcc
Confidence               2478999987653

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=85.38  E-value=0.9  Score=45.41  Aligned_cols=44  Identities=23%  Similarity=0.060  Sum_probs=36.7

Q ss_pred             CCCCCeEEEEcccc-cHHHHHHHhhCCCCEEEEEeCCHHHHHHHH
Q 044572          296 VPYGASVTDLYAGA-GVIGLSLAAARKCRSVKCVEINKESQLSFE  339 (457)
Q Consensus       296 ~~~~~~vLDl~cG~-G~~sl~lA~~~~~~~V~gVE~~~~av~~A~  339 (457)
                      +.+|++||-.|+|. |.+++.+|+..|+++|+++|.+++.++.++
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~  227 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS  227 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence            34789999999865 888888888777779999999999887765

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=84.11  E-value=1.4  Score=47.53  Aligned_cols=104  Identities=11%  Similarity=-0.017  Sum_probs=64.4

Q ss_pred             CCeEEEEcccccHHHHHHHhhC----------CC--CEEEEEeCCHHHHHHHHHHHh--------------hCCC-----
Q 044572          299 GASVTDLYAGAGVIGLSLAAAR----------KC--RSVKCVEINKESQLSFEKTVS--------------RLPK-----  347 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~~----------~~--~~V~gVE~~~~av~~A~~Na~--------------~~~~-----  347 (457)
                      .-+|+|+|-|+|...+.+.+..          ..  -+++.+|..|-..+++++-.+              ....     
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            3589999999999777765531          11  369999996544444443211              0000     


Q ss_pred             ------CCCCcEEEEEccCCcCcccc----cCCccEEEECCCCCCc-----cHHHHHHHHhcCCCCcEEE
Q 044572          348 ------SVDGNISWHNADNSIEPLSW----LVGSDVLVVDPPRKGL-----DSSLVHALQSIGSAERKAK  402 (457)
Q Consensus       348 ------~~~~nv~~~~~d~~~~~~~~----~~~~D~vi~DPPR~Gl-----~~~v~~~l~~~~~~~~ivy  402 (457)
                            ++.-.++++.||+.+.+.++    ...+|++++|+-....     +.+++..|..+..++..+.
T Consensus       139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~  208 (689)
T 3pvc_A          139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFS  208 (689)
T ss_dssp             EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEE
T ss_pred             eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEE
Confidence                  01125678889998777655    2579999999964322     3567777777653444443

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=83.93  E-value=8.3  Score=38.46  Aligned_cols=73  Identities=14%  Similarity=-0.085  Sum_probs=42.9

Q ss_pred             CCeEEEEcccccHHHHHHHhh-----------------CCCCEEEEEeCC-----------HHHHHHHHHHHhhCCCCCC
Q 044572          299 GASVTDLYAGAGVIGLSLAAA-----------------RKCRSVKCVEIN-----------KESQLSFEKTVSRLPKSVD  350 (457)
Q Consensus       299 ~~~vLDl~cG~G~~sl~lA~~-----------------~~~~~V~gVE~~-----------~~av~~A~~Na~~~~~~~~  350 (457)
                      .-+|+|+||++|..++.+...                 ...-+|+..|.-           +...+.+++.   .  +..
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~--g~~  127 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---N--GRK  127 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---T--CCC
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---c--cCC
Confidence            467999999999999988764                 112367788876           4444443221   1  111


Q ss_pred             CcEEEEEccCCcCcccc--cCCccEEEE
Q 044572          351 GNISWHNADNSIEPLSW--LVGSDVLVV  376 (457)
Q Consensus       351 ~nv~~~~~d~~~~~~~~--~~~~D~vi~  376 (457)
                      .+-.|+.|....+-.++  .+.+|+|+.
T Consensus       128 ~~~~f~~gvpgSFy~rlfp~~S~d~v~S  155 (384)
T 2efj_A          128 IGSCLIGAMPGSFYSRLFPEESMHFLHS  155 (384)
T ss_dssp             TTSEEEEECCSCTTSCCSCTTCEEEEEE
T ss_pred             CCceEEEecchhhhhccCCCCceEEEEe
Confidence            23367777665543322  245777754

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=83.66  E-value=6.5  Score=38.96  Aligned_cols=111  Identities=14%  Similarity=0.172  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572          283 RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI  362 (457)
Q Consensus       283 ~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~  362 (457)
                      ..-|.|++.+.+. ..+.+||.+..+.|.+++.++..    .++.+.-|--+...++.|++.|+.. .+++++....  +
T Consensus        24 a~d~~ll~~~~~~-~~~~~~~~~~d~~gal~~~~~~~----~~~~~~ds~~~~~~~~~n~~~~~~~-~~~~~~~~~~--~   95 (375)
T 4dcm_A           24 AADEYLLQQLDDT-EIRGPVLILNDAFGALSCALAEH----KPYSIGDSYISELATRENLRLNGID-ESSVKFLDST--A   95 (375)
T ss_dssp             HHHHHHHHTTTTC-CCCSCEEEECCSSSHHHHHTGGG----CCEEEESCHHHHHHHHHHHHHTTCC-GGGSEEEETT--S
T ss_pred             hHHHHHHHhhhhc-cCCCCEEEECCCCCHHHHhhccC----CceEEEhHHHHHHHHHHHHHHcCCC-ccceEecccc--c
Confidence            3445566654443 24568999999999999998743    4677766777888889999984321 1235654321  1


Q ss_pred             CcccccCCccEEEECCCCCC-ccHHHHHHHHhcCCCCcEEEEe
Q 044572          363 EPLSWLVGSDVLVVDPPRKG-LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       363 ~~~~~~~~~D~vi~DPPR~G-l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                         .....+|+|++--|+.- .-...+..+...-.++..+++.
T Consensus        96 ---~~~~~~~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~  135 (375)
T 4dcm_A           96 ---DYPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAG  135 (375)
T ss_dssp             ---CCCSSCSEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEE
T ss_pred             ---ccccCCCEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence               12357999999988741 1122344444433344444443

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=83.40  E-value=1.5  Score=43.27  Aligned_cols=97  Identities=16%  Similarity=0.074  Sum_probs=59.0

Q ss_pred             CCCCCeEEEEcccc-cHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC---ccccc-CC
Q 044572          296 VPYGASVTDLYAGA-GVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE---PLSWL-VG  370 (457)
Q Consensus       296 ~~~~~~vLDl~cG~-G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~---~~~~~-~~  370 (457)
                      +.+|++||-.|+|. |.+++.+|+..|+++|+++|.+++-++.+++.    +   .+  ..+..+..++   +.+.. +.
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----G---a~--~vi~~~~~~~~~~~~~~~~gg  258 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----G---AT--HVINSKTQDPVAAIKEITDGG  258 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----T---CS--EEEETTTSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C---CC--EEecCCccCHHHHHHHhcCCC
Confidence            34789999998865 77788888777777899999999988887642    1   12  2232221121   11111 25


Q ss_pred             ccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          371 SDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       371 ~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|+||--   .|....+...+..+++.++++.+.
T Consensus       259 ~D~vid~---~g~~~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          259 VNFALES---TGSPEILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             EEEEEEC---SCCHHHHHHHHHTEEEEEEEEECC
T ss_pred             CcEEEEC---CCCHHHHHHHHHHHhcCCEEEEeC
Confidence            8887742   232233445556666556666664

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=83.35  E-value=1.7  Score=43.17  Aligned_cols=45  Identities=20%  Similarity=0.111  Sum_probs=36.8

Q ss_pred             CCCCCeEEEEcccc-cHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572          296 VPYGASVTDLYAGA-GVIGLSLAAARKCRSVKCVEINKESQLSFEK  340 (457)
Q Consensus       296 ~~~~~~vLDl~cG~-G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~  340 (457)
                      +.+|++||-.|+|. |.+++.+|+..|+++|+++|.+++-++.+++
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            34789999888754 7788888888888799999999998888753

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=83.33  E-value=0.62  Score=45.45  Aligned_cols=54  Identities=13%  Similarity=-0.068  Sum_probs=36.2

Q ss_pred             CcEEEEEccCCcCcccc-cCCccEEEECCCCCCc----------------cHHHHHHHHhcCCCCcEEEEe
Q 044572          351 GNISWHNADNSIEPLSW-LVGSDVLVVDPPRKGL----------------DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       351 ~nv~~~~~d~~~~~~~~-~~~~D~vi~DPPR~Gl----------------~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++..+++||+.+.+..+ .+.+|+|++|||+...                -..+++.+.++..+++.+|+.
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            46789999987755433 2579999999998532                123444444443478888886

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=83.15  E-value=0.34  Score=45.66  Aligned_cols=52  Identities=10%  Similarity=-0.053  Sum_probs=34.3

Q ss_pred             EEEEEccCCcCccccc-CCccEEEECCCCCCc----------------cHHHHHHHHhcCCCCcEEEEe
Q 044572          353 ISWHNADNSIEPLSWL-VGSDVLVVDPPRKGL----------------DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       353 v~~~~~d~~~~~~~~~-~~~D~vi~DPPR~Gl----------------~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .+++++|+.+.+..+. +++|+|++|||+..-                ...+++.+.++..+++.+|++
T Consensus         5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A            5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            3678999877654433 479999999998522                123444444443478888887

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=82.56  E-value=16  Score=34.43  Aligned_cols=104  Identities=12%  Similarity=0.040  Sum_probs=61.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEE-EccCCcC--cccccCCc
Q 044572          298 YGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH-NADNSIE--PLSWLVGS  371 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~-~~d~~~~--~~~~~~~~  371 (457)
                      .+++|| +-.|+|.+|..+++.   .| .+|++++.++...+......+..   ...+++++ .+|+.+.  +......+
T Consensus        10 ~~~~vl-VTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~d~~~~~~~~~~~   84 (342)
T 1y1p_A           10 EGSLVL-VTGANGFVASHVVEQLLEHG-YKVRGTARSASKLANLQKRWDAK---YPGRFETAVVEDMLKQGAYDEVIKGA   84 (342)
T ss_dssp             TTCEEE-EETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHH---STTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred             CCCEEE-EECCccHHHHHHHHHHHHCC-CEEEEEeCCcccHHHHHHHhhcc---CCCceEEEEecCCcChHHHHHHHcCC
Confidence            466777 566789998887653   23 48999999987655443332211   01467888 7898753  22223468


Q ss_pred             cEEEECCCCCCc--cH------------HHHHHHHhcCCCCcEEEEecc
Q 044572          372 DVLVVDPPRKGL--DS------------SLVHALQSIGSAERKAKSLSE  406 (457)
Q Consensus       372 D~vi~DPPR~Gl--~~------------~v~~~l~~~~~~~~ivyvs~~  406 (457)
                      |+||..-.....  +.            .+++++......+++||+||.
T Consensus        85 d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~  133 (342)
T 1y1p_A           85 AGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSST  133 (342)
T ss_dssp             SEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCG
T ss_pred             CEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccH
Confidence            998875432211  11            234444432236899999864

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=82.53  E-value=3.4  Score=40.28  Aligned_cols=96  Identities=15%  Similarity=0.057  Sum_probs=57.9

Q ss_pred             CCCCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC-CcCc---ccc---
Q 044572          296 VPYGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN-SIEP---LSW---  367 (457)
Q Consensus       296 ~~~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~-~~~~---~~~---  367 (457)
                      +.+|++||-.|+| .|.+++.+|+..|++ |+++|.+++-++.+++    ++   .+  ..+..+- .+..   .+.   
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~-Vi~~~~~~~~~~~~~~----lG---a~--~~~~~~~~~~~~~~i~~~~~~  235 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKN----CG---AD--VTLVVDPAKEEESSIIERIRS  235 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHH----TT---CS--EEEECCTTTSCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHH----hC---CC--EEEcCcccccHHHHHHHHhcc
Confidence            3478999988875 367777777777764 9999999998887763    22   12  2222221 1211   111   


Q ss_pred             --cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          368 --LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       368 --~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                        ...+|+||-.-   |....+...+..+++.++++.+.
T Consensus       236 ~~g~g~D~vid~~---g~~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          236 AIGDLPNVTIDCS---GNEKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             HSSSCCSEEEECS---CCHHHHHHHHHHSCTTCEEEECS
T ss_pred             ccCCCCCEEEECC---CCHHHHHHHHHHHhcCCEEEEEe
Confidence              13689887533   22223455566677677777764

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=81.64  E-value=2.3  Score=41.63  Aligned_cols=97  Identities=14%  Similarity=0.060  Sum_probs=60.2

Q ss_pred             CCCCCeEEEEcccc-cHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEcc---CCcC---cccc-
Q 044572          296 VPYGASVTDLYAGA-GVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD---NSIE---PLSW-  367 (457)
Q Consensus       296 ~~~~~~vLDl~cG~-G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d---~~~~---~~~~-  367 (457)
                      +.+|++||-.|+|. |.+++.+|+..|+++|+++|.+++-++.+++    ++   .+  ..+..+   ..+.   +... 
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lG---a~--~vi~~~~~~~~~~~~~i~~~~  239 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IG---AD--LVLQISKESPQEIARKVEGQL  239 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TT---CS--EEEECSSCCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hC---CC--EEEcCcccccchHHHHHHHHh
Confidence            34789999988764 7777888887777799999999998887763    22   12  223222   1111   1111 


Q ss_pred             cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          368 LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       368 ~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ...+|+||---   |....+...+..+++.++++.+.
T Consensus       240 ~~g~D~vid~~---g~~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          240 GCKPEVTIECT---GAEASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             TSCCSEEEECS---CCHHHHHHHHHHSCTTCEEEECS
T ss_pred             CCCCCEEEECC---CChHHHHHHHHHhcCCCEEEEEe
Confidence            14689887532   32233455666677677777764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=81.19  E-value=3.9  Score=34.12  Aligned_cols=91  Identities=12%  Similarity=0.068  Sum_probs=53.7

Q ss_pred             CeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC--cccc-cCCccEE
Q 044572          300 ASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSW-LVGSDVL  374 (457)
Q Consensus       300 ~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~--~~~~-~~~~D~v  374 (457)
                      .+|+  -||.|.+|..+|+..  ....|+++|.+++.++.+++   .       .+.++.+|+.+.  +... ...+|+|
T Consensus         8 ~~vi--IiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~---~-------g~~~i~gd~~~~~~l~~a~i~~ad~v   75 (140)
T 3fwz_A            8 NHAL--LVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE---R-------GVRAVLGNAANEEIMQLAHLECAKWL   75 (140)
T ss_dssp             SCEE--EECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH---T-------TCEEEESCTTSHHHHHHTTGGGCSEE
T ss_pred             CCEE--EECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH---c-------CCCEEECCCCCHHHHHhcCcccCCEE
Confidence            3455  345677777777531  12489999999999877653   1       246788998753  1111 2468988


Q ss_pred             EECCCCCCccHHHHHHHHhcCCCCcEEE
Q 044572          375 VVDPPRKGLDSSLVHALQSIGSAERKAK  402 (457)
Q Consensus       375 i~DPPR~Gl~~~v~~~l~~~~~~~~ivy  402 (457)
                      |+--|.......+...++.+.+..+++.
T Consensus        76 i~~~~~~~~n~~~~~~a~~~~~~~~iia  103 (140)
T 3fwz_A           76 ILTIPNGYEAGEIVASARAKNPDIEIIA  103 (140)
T ss_dssp             EECCSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             EEECCChHHHHHHHHHHHHHCCCCeEEE
Confidence            8765543222234555666653334443

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=80.90  E-value=5.9  Score=32.72  Aligned_cols=91  Identities=18%  Similarity=0.165  Sum_probs=55.6

Q ss_pred             CeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC--cccc-cCCccE
Q 044572          300 ASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSW-LVGSDV  373 (457)
Q Consensus       300 ~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~--~~~~-~~~~D~  373 (457)
                      .+|+=+|+  |.+|..+++.   .| .+|+++|.+++.++.++.   .       .+.++.+|+.+.  +... ...+|+
T Consensus         7 ~~v~I~G~--G~iG~~la~~L~~~g-~~V~~id~~~~~~~~~~~---~-------~~~~~~gd~~~~~~l~~~~~~~~d~   73 (141)
T 3llv_A            7 YEYIVIGS--EAAGVGLVRELTAAG-KKVLAVDKSKEKIELLED---E-------GFDAVIADPTDESFYRSLDLEGVSA   73 (141)
T ss_dssp             CSEEEECC--SHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHH---T-------TCEEEECCTTCHHHHHHSCCTTCSE
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHH---C-------CCcEEECCCCCHHHHHhCCcccCCE
Confidence            45665555  6677777653   23 489999999998876653   1       246788998753  1111 246899


Q ss_pred             EEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          374 LVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       374 vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ||+-.|.......+...++.+. ..+++...
T Consensus        74 vi~~~~~~~~n~~~~~~a~~~~-~~~iia~~  103 (141)
T 3llv_A           74 VLITGSDDEFNLKILKALRSVS-DVYAIVRV  103 (141)
T ss_dssp             EEECCSCHHHHHHHHHHHHHHC-CCCEEEEE
T ss_pred             EEEecCCHHHHHHHHHHHHHhC-CceEEEEE
Confidence            9887773222223455555665 45555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	457
d1uwva2	358	c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransf	3e-17
d2oyra1	250	c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shi	3e-04

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} Length = 358

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

 Score = 80.5 bits (197), Expect = 3e-17
 Identities = 44/343 (12%), Positives = 108/343 (31%), Gaps = 47/343 (13%)

Query: 54  CPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLD-FTFDSCRLYGWRCRAKLAVRGTS 112
           CPHF  C GC  + +    +     +     +   D     +   +G+R RA+L++    
Sbjct: 7   CPHFGVCGGCQQQ-HASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLP 65

Query: 113 TSP--LIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRY 170
            +    +G  + G+ ++VD+  C    P++ A +  +R  +  L    +           
Sbjct: 66  KTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATS 125

Query: 171 VQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREH 230
             + +  +   L +++R +                                         
Sbjct: 126 GTLMILRHTAPLSSADREK----------------------------------------- 144

Query: 231 YIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLR 290
                +++ +     +   +     +     W +  G+ ++ +P  F Q N      ++ 
Sbjct: 145 --LERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVA 202

Query: 291 KLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVD 350
           +  +++        L    G+   +L  A +  SV  VE         ++          
Sbjct: 203 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNV 262

Query: 351 GNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQS 393
                +  ++  +      G D +++DP R G    +   ++ 
Sbjct: 263 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKL 305

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 29/192 (15%), Positives = 55/192 (28%), Gaps = 22/192 (11%)

Query: 264 NVGGIDISLAPSSFGQANTRAF---DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAAR 320
            +GGI +     +            + + + +     Y   V D  AG G     L  A 
Sbjct: 51  KLGGIFVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVL--AS 108

Query: 321 KCRSVKCVEINKESQLSFEKTVSRLPKSVD------GNISWHNADNSIEPLSWLVGSDVL 374
               V+ +E N       +  ++R     +        +   +A +            V+
Sbjct: 109 VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168

Query: 375 VVDPPR-----KGLDSSLVHALQSIGSAERKAKSLSESSSSM------VKEEKRPWILRA 423
            +DP         L    +   QS+   +  A  L E +  +      VK       L  
Sbjct: 169 YLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLATKRVVVKRPDYAPPLAN 228

Query: 424 KEASVQIGSKTN 435
                 + +K +
Sbjct: 229 VATPNAVVTKGH 240

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	457
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	100.0
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.86
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.82
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.82
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.77
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.71
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.69
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.66
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.64
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.62
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.58
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.57
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.55
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.54
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.54
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.53
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.48
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.45
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.3
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.24
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.22
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.22
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.19
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.12
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.11
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.1
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.09
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.06
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.05
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.05
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.05
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.04
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.03
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.02
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.01
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.0
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.99
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.99
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.98
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.98
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.97
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.96
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.96
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.95
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.95
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.95
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.93
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.88
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.88
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.83
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.83
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.82
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.8
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.79
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.76
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.76
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.76
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.74
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.73
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.73
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.72
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.68
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.67
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.64
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.49
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.47
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.46
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.45
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.45
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.44
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.44
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.38
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.38
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.35
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.33
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.28
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.28
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.18
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.13
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.12
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.11
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.09
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.07
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	98.05
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.03
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.03
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.98
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	97.94
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.92
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.9
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.8
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	97.69
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.59
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.57
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.55
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.55
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.48
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	97.43
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.39
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.28
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.24
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.96
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	96.65
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	96.07
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	96.03
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	95.97
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.17
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.31
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	93.06
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	92.67
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	92.56
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.54
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	92.09
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	90.67
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.4
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.25
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	88.71
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.81
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	87.77
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	87.75
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	87.42
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	86.86
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	86.12
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	85.81
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	85.78
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	82.34
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	81.7

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.5e-57  Score=455.41  Aligned_cols=338  Identities=17%  Similarity=0.244  Sum_probs=250.8

Q ss_pred             CCccCCCCCCCcCccCccCccCCchHHHHHHHHHHHhcCCCc-eecccCCCccceeeeeEEeee--cCCCceEEEeecCc
Q 044572           48 LTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLD-FTFDSCRLYGWRCRAKLAVRG--TSTSPLIGLYQEGT  124 (457)
Q Consensus        48 ~Rv~p~C~~f~~CGGC~lqh~~~~~~~~~~~~~~l~r~g~~~-~~~~s~~~~~YRnR~~l~v~~--~~g~~~vGf~~~~s  124 (457)
                      +||+|+|+||+.||||+||| ++|+.|++.-++.++++...+ .++.++.+||||||++|++..  .+++..+|||+++|
T Consensus         1 dRv~P~C~~f~~CGGC~~qh-~~y~~Ql~~K~~~l~~~~~~~~~~v~~~~p~~YR~r~~~~v~~~~~~~~~~~Gf~~~~s   79 (358)
T d1uwva2           1 ERETPRCPHFGVCGGCQQQH-ASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGS   79 (358)
T ss_dssp             TBCCCSCTTTTTBTTCSCTT-BCHHHHHHHHHHHHHHHHTSCCCEEECCCSSSCBSEEEEEEEEETTTTEEEEEEEBTTS
T ss_pred             CCCCCCCCCCCcCcCchhcC-CCHHHHHHHHHHHHHHhcCcccCcccCCCCCCCcceEEEEeeEecCCCceEEEEEecCC
Confidence            69999999999999999999 677666554455566543222 245678899999999999974  35678999999999


Q ss_pred             cceEeCCCCccCChhHHHHHHHHHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCccccccCCcEEEEEEeCCCCC
Q 044572          125 HNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNE  204 (457)
Q Consensus       125 ~~iv~i~~C~i~~p~i~~~l~~l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~~~~~~v~v~lv~~~~~~  204 (457)
                      |.+|+|++|++++|.+++++..+++++..     |+...+.|.++   +...            .+|..+++.....  .
T Consensus        80 ~~iV~i~~C~i~~~~i~~~l~~lr~~l~~-----~~~~~~~~~~~---~~~~------------~~g~~~~l~~~~~--~  137 (358)
T d1uwva2          80 SDIVDVKQCPILAPQLEALLPKVRACLGS-----LQAMRHLGHVE---LVQA------------TSGTLMILRHTAP--L  137 (358)
T ss_dssp             SCEEECSCCTTBCHHHHHHHHHHHHHHTT-----CGGGGGEEEEE---EEEE------------TTEEEEEEEESSC--C
T ss_pred             ceeeeccccccccHHHHHHHHHHHHhhhc-----ccccccceEEE---EEEe------------cCCeEEEEEeccc--c
Confidence            99999999999999999999999998765     33333334332   2221            3455555433322  1


Q ss_pred             CCCCchhHHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccCeEEEeeeeEEEEECCCCCCCCCHHH
Q 044572          205 KSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA  284 (457)
Q Consensus       205 ~~~~~~~~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~~~  284 (457)
                      .   .... .....+...       ..+.   ...+...      .....++|+..+.+ .+|++|.++|++|||+|+.+
T Consensus       138 ~---~~~~-~~l~~~~~~-------~~~~---~~~~~~~------~~~~~~~g~~~~~~-~~g~~~~i~p~sFfQ~N~~~  196 (358)
T d1uwva2         138 S---SADR-EKLERFSHS-------EGLD---LYLAPDS------EILETVSGEMPWYD-SNGLRLTFSPRDFIQVNAGV  196 (358)
T ss_dssp             C---HHHH-HHHHHHHHH-------HTCE---EEEESSS------SCCEEEECCCCEEE-ETTEEEECCSSSCCCSBHHH
T ss_pred             C---HHHH-HHHHHhhhc-------cceE---EEEeecc------eeEEeecCCceEEe-cCCEEEEECCchhhccchhh
Confidence            1   1112 222222111       0111   1122221      23456778776554 58999999999999999999


Q ss_pred             HHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572          285 FDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI  362 (457)
Q Consensus       285 ~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~  362 (457)
                      ++.|++.+.+++.  ++++|||||||+|+||+.||+.  +++|+|||++++|+++|++|++.   |+.+|++|+++|+++
T Consensus       197 ~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~---n~i~n~~~~~~~~~~  271 (358)
T d1uwva2         197 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARL---NGLQNVTFYHENLEE  271 (358)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHH---TTCCSEEEEECCTTS
T ss_pred             hhHHHHHHHHhhccCCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHh---cccccceeeecchhh
Confidence            9999999999875  6789999999999999999975  56999999999999999999998   456899999999988


Q ss_pred             Ccccc---cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccccccccCCCCC
Q 044572          363 EPLSW---LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSENQ  439 (457)
Q Consensus       363 ~~~~~---~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (457)
                      .+...   ...+|+||+||||+|++ ++++.|.++. +++|||||     |+|.++.||...+... +.+..  .....+
T Consensus       272 ~~~~~~~~~~~~d~vilDPPR~G~~-~~~~~l~~~~-~~~ivYVS-----Cnp~TlaRDl~~l~~~-gy~l~--~i~~~D  341 (358)
T d1uwva2         272 DVTKQPWAKNGFDKVLLDPARAGAA-GVMQQIIKLE-PIRIVYVS-----CNPATLARDSEALLKA-GYTIA--RLAMLD  341 (358)
T ss_dssp             CCSSSGGGTTCCSEEEECCCTTCCH-HHHHHHHHHC-CSEEEEEE-----SCHHHHHHHHHHHHHT-TCEEE--EEEEEC
T ss_pred             hhhhhhhhhccCceEEeCCCCccHH-HHHHHHHHcC-CCEEEEEe-----CCHHHHHHHHHHHHHC-CCeEe--EEEEEe
Confidence            65432   25689999999999987 5899999986 89999999     9999999998876543 11111  112457


Q ss_pred             CCCCc
Q 044572          440 SLPQT  444 (457)
Q Consensus       440 ~~p~~  444 (457)
                      .+|+|
T Consensus       342 ~FP~T  346 (358)
T d1uwva2         342 MFPHT  346 (358)
T ss_dssp             CSTTS
T ss_pred             cCCCC
Confidence            77776

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.86  E-value=4.3e-21  Score=188.34  Aligned_cols=191  Identities=13%  Similarity=0.042  Sum_probs=130.8

Q ss_pred             eEEEeeccC---eEEEeeeeEEEEECCC-----CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCC
Q 044572          251 RWRHLLGET---DFWENVGGIDISLAPS-----SFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKC  322 (457)
Q Consensus       251 ~~~~l~G~~---~~~~~~~g~~~~i~~~-----~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~  322 (457)
                      ....++|..   .+...++|++|.+++.     +||..+++....    +...+.+|++|||+|||+|+||+.+|. .|+
T Consensus        93 ~~~~l~G~~~~~~~~v~E~Gl~f~vdl~~g~ktGlflDqR~~r~~----l~~~~~~g~~VLdlf~~~G~~sl~aa~-~ga  167 (317)
T d2b78a2          93 VSAHLYGQEAPEQFLILENGISYNVFLNDGLMTGIFLDQRQVRNE----LINGSAAGKTVLNLFSYTAAFSVAAAM-GGA  167 (317)
T ss_dssp             CEEEEEESCCCSSEEEEETTEEEEECSSSSSCCSSCGGGHHHHHH----HHHTTTBTCEEEEETCTTTHHHHHHHH-TTB
T ss_pred             cceEEecCCCCcceeeeeCCEEEEEEcccccccCCcHHHHHHHHH----HHHHhhCCCceeecCCCCcHHHHHHHh-CCC
Confidence            345677753   3566789999999975     455544433222    223345699999999999999999886 678


Q ss_pred             CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc---cCCccEEEECCCCCCccH-----------HHH
Q 044572          323 RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW---LVGSDVLVVDPPRKGLDS-----------SLV  388 (457)
Q Consensus       323 ~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~---~~~~D~vi~DPPR~Gl~~-----------~v~  388 (457)
                      ++|++||+|+.+++.|++|++.|+. ..++++|+++|+++++...   ..+||+||+|||+.+-++           +++
T Consensus       168 ~~V~~vD~s~~a~~~a~~N~~~n~l-~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~  246 (317)
T d2b78a2         168 MATTSVDLAKRSRALSLAHFEANHL-DMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLI  246 (317)
T ss_dssp             SEEEEEESCTTHHHHHHHHHHHTTC-CCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHH
T ss_pred             ceEEEecCCHHHHHHHHHHHHHhcc-cCcceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHH
Confidence            8999999999999999999998642 2368999999998876543   257999999999654322           233


Q ss_pred             HHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccccccc------cCCCCC---CCCCceeeeeccc
Q 044572          389 HALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSK------TNSENQ---SLPQTLIYISCGW  452 (457)
Q Consensus       389 ~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---~~p~~~~yl~~~~  452 (457)
                      +...++-.+++++++|+    |+++...++|...+.++..+.+..      ...||+   .+|++. |||+.+
T Consensus       247 ~~a~~ll~pgG~l~~~s----cs~~~~~~~f~~~v~~a~~~~~~~~~~~~~~~~DfP~~~~~pe~~-YLK~~~  314 (317)
T d2b78a2         247 RQGLEILSENGLIIAST----NAANMTVSQFKKQIEKGFGKQKHTYLDLQQLPSDFAVNVQDESSN-YLKVFT  314 (317)
T ss_dssp             HHHHHTEEEEEEEEEEE----CCTTSCHHHHHHHHHHHHTTCCCEEEEEECCCTTSCCCTTCGGGC-CCEEEE
T ss_pred             HHHHHHcCCCCEEEEEe----CCccCCHHHHHHHHHHHHHHcCCeEEEeccCCCCCCCCCCCCCCC-CcEEEE
Confidence            33333333555555543    767777777777666655433221      123664   677777 999865

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=7.4e-20  Score=180.27  Aligned_cols=222  Identities=14%  Similarity=0.110  Sum_probs=146.3

Q ss_pred             HHHHHHHHHHcCCCCCCCceeEEEEEEeecCC-CCcccCCeEEEeeccCe--EEEeeeeEEEEEC----CCCCCCCCHHH
Q 044572          212 LESLAEFLWRNGGSRSREHYIHSVWANFQTST-NNVIFGNRWRHLLGETD--FWENVGGIDISLA----PSSFGQANTRA  284 (457)
Q Consensus       212 ~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~-~~~~~~~~~~~l~G~~~--~~~~~~g~~~~i~----~~~FfQ~n~~~  284 (457)
                      .+.+.+.|...      .+.+.+++....... ...........++|...  .+.+.++..|.++    .++||+.++..
T Consensus        62 ~~~i~~aL~~~------~~~~~~i~~r~~~~~r~~~~l~~~~~~l~g~~~~~~~v~e~~~~~~~~~~~~~tG~flDqr~~  135 (324)
T d2as0a2          62 KLDVAEAIMEV------EPGIETVFEKNTGRSRRREGLPEIERVLLGKEKYRTIIQEGRAKFIVDMRGQKTGFFLDQREN  135 (324)
T ss_dssp             HHHHHHHHHHH------CTTCCEEEEEECSHHHHHTTCCCEEEEEEESCCCEEEEEETTEEEEEESSSSSSCCCSTTHHH
T ss_pred             HHHHHHHHHHh------cccceeeeeeccchhhhhcCCchhheeeccCCCceEEEEcCCEEEEecccccccCcccchhhH
Confidence            34455555432      234566665432211 11122344556777653  3345677887776    46888888766


Q ss_pred             HHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572          285 FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP  364 (457)
Q Consensus       285 ~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~  364 (457)
                      ..    ++..++.+|++|||+|||+|.+|+.+|. .|+++|++||+|+.+++.|++|++.|  +..++++++++|+++++
T Consensus       136 r~----~~~~~~~~g~~VLDl~~g~G~~si~~a~-~ga~~V~~vD~s~~al~~a~~N~~~n--gl~~~~~~~~~d~~~~~  208 (324)
T d2as0a2         136 RL----ALEKWVQPGDRVLDVFTYTGGFAIHAAI-AGADEVIGIDKSPRAIETAKENAKLN--GVEDRMKFIVGSAFEEM  208 (324)
T ss_dssp             HH----HHGGGCCTTCEEEETTCTTTHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHT--TCGGGEEEEESCHHHHH
T ss_pred             HH----HHHhhcCCCCeeecccCcccchhhhhhh-cCCcEEEeecCCHHHHHHHHHHHHHc--CCCccceeeechhhhhh
Confidence            43    3455666799999999999999999997 56789999999999999999999985  34468999999998765


Q ss_pred             ccc---cCCccEEEECCCCCCccH-----------HHHHHHH-hcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccc
Q 044572          365 LSW---LVGSDVLVVDPPRKGLDS-----------SLVHALQ-SIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ  429 (457)
Q Consensus       365 ~~~---~~~~D~vi~DPPR~Gl~~-----------~v~~~l~-~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~  429 (457)
                      ..+   ..+||+||+|||..+.++           +++.... -+++.+.++|.+     |+++...+.|.+.++.+..+
T Consensus       209 ~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s-----~s~~~~~~~f~~~v~~a~~~  283 (324)
T d2as0a2         209 EKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS-----CSQHVDLQMFKDMIIAAGAK  283 (324)
T ss_dssp             HHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE-----CCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe-----CCccCCHHHHHHHHHHHHHH
Confidence            432   257999999999765432           1222222 344455666666     77766666666665544432


Q ss_pred             ----cc--c---ccCCCCC---CCCCceeeeeccc
Q 044572          430 ----IG--S---KTNSENQ---SLPQTLIYISCGW  452 (457)
Q Consensus       430 ----~~--~---~~~~~~~---~~p~~~~yl~~~~  452 (457)
                          ..  .   ....||+   ++||+. |||+.+
T Consensus       284 ~gr~~~~~~~~~~~~~DhP~~~~~pe~~-YLk~~~  317 (324)
T d2as0a2         284 AGKFLKMLEPYRTQAPDHPILMASKDTE-YLKCLF  317 (324)
T ss_dssp             TTEEEEESSCBBCSCTTSCCBTTCGGGC-CCEEEE
T ss_pred             cCCeEEEeeecCCCCCCCCCCCCCCCCC-CcEEEE
Confidence                21  1   1233774   678888 999865

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=3.2e-20  Score=182.38  Aligned_cols=191  Identities=18%  Similarity=0.106  Sum_probs=132.0

Q ss_pred             CeEEEeeccC--eEEEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEE
Q 044572          250 NRWRHLLGET--DFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKC  327 (457)
Q Consensus       250 ~~~~~l~G~~--~~~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~g  327 (457)
                      .....++|+.  .+...++|++|.+++..+.+++.+.-.+......+.. +|++|||+|||+|.+++++|..  +++|++
T Consensus        96 ~~~~~l~g~~~~~~~v~E~G~~f~v~l~~~~~tG~flDqr~~r~~~~~~-~g~rVLDl~~gtG~~s~~~a~g--~~~V~~  172 (318)
T d1wxxa2          96 LYVRPLLGEVPERVQVQEGRVRYLVDLRAGQKTGAYLDQRENRLYMERF-RGERALDVFSYAGGFALHLALG--FREVVA  172 (318)
T ss_dssp             CEEEEEESCCCSEEEEEETTEEEEEECSTTSCCCCCGGGHHHHHHGGGC-CEEEEEEETCTTTHHHHHHHHH--EEEEEE
T ss_pred             ceeeeecCCccceEEEEECCEEEEEechhccccccchhhhhhHHHHHHh-CCCeeeccCCCCcHHHHHHHhc--CCcEEe
Confidence            3456788864  4667889999999975444433222222223334443 6899999999999999999853  569999


Q ss_pred             EeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc---cCCccEEEECCCCCCccH-----------HHHH-HHH
Q 044572          328 VEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW---LVGSDVLVVDPPRKGLDS-----------SLVH-ALQ  392 (457)
Q Consensus       328 VE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~---~~~~D~vi~DPPR~Gl~~-----------~v~~-~l~  392 (457)
                      ||+|+.+++.|++|++.|   +.++++++++|+++++..+   ..+||+||+|||..+.+.           +++. ++.
T Consensus       173 vD~s~~al~~a~~n~~~n---gl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~  249 (318)
T d1wxxa2         173 VDSSAEALRRAEENARLN---GLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIK  249 (318)
T ss_dssp             EESCHHHHHHHHHHHHHT---TCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHH
T ss_pred             ecchHHHHHHHHHHHHHc---CCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999984   4578999999998865432   357999999999765432           1222 233


Q ss_pred             hcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhcccccc--------ccCCCCC---CCCCceeeeeccc
Q 044572          393 SIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGS--------KTNSENQ---SLPQTLIYISCGW  452 (457)
Q Consensus       393 ~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---~~p~~~~yl~~~~  452 (457)
                      -+++.+.++|.|     |++......|.+.+.++..+.+.        ...+||+   .+|++. |||+.+
T Consensus       250 lLkpGG~Lv~~s-----cs~~~~~~~f~~~v~~a~~~a~~~~~~~~~~~~~~DhP~~~~~pe~~-YLK~~~  314 (318)
T d1wxxa2         250 LLKEGGILATAS-----CSHHMTEPLFYAMVAEAAQDAHRLLRVVEKRGQPFDHPVLLNHPETH-YLKFAV  314 (318)
T ss_dssp             TEEEEEEEEEEE-----CCTTSCHHHHHHHHHHHHHHTTCCEEEEEEECCCTTSCCBTTBGGGC-CCEEEE
T ss_pred             HcCCCCEEEEEe-----CCcccCHHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCCCCCCCCC-cceeEE
Confidence            355556667766     77777777777766555433321        1234775   667777 999754

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.77  E-value=7.8e-19  Score=170.44  Aligned_cols=119  Identities=18%  Similarity=0.170  Sum_probs=91.0

Q ss_pred             eEEEeeeeEEEEECCCCCCCCC-----HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHH
Q 044572          260 DFWENVGGIDISLAPSSFGQAN-----TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES  334 (457)
Q Consensus       260 ~~~~~~~g~~~~i~~~~FfQ~n-----~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~a  334 (457)
                      .+..+++|++|.++++.|.+++     +..-..+.+.+.. ..++.+|||||||+|+||+.+|. .|+ +|++||+|+.|
T Consensus        90 ~~~v~e~gl~f~v~~~~~~~tG~f~dqr~nr~~~~~~~~~-~~~~~rVLdlf~~tG~~sl~aa~-~GA-~V~~VD~s~~a  166 (309)
T d2igta1          90 TWPLSLLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVET-ADRPLKVLNLFGYTGVASLVAAA-AGA-EVTHVDASKKA  166 (309)
T ss_dssp             EEEEEETTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHH-SSSCCEEEEETCTTCHHHHHHHH-TTC-EEEEECSCHHH
T ss_pred             eEEEEEeEEEEEEeccCCCccccccchhHHHHHHHHHHhh-ccCCCeEEEecCCCcHHHHHHHh-CCC-eEEEEeChHHH
Confidence            4556789999999987666654     3333333333333 34688999999999999999996 455 89999999999


Q ss_pred             HHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc---cCCccEEEECCCCCC
Q 044572          335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW---LVGSDVLVVDPPRKG  382 (457)
Q Consensus       335 v~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~---~~~~D~vi~DPPR~G  382 (457)
                      ++.|++|++.|+. ...+++|+++|+++++...   ...||+||+|||+.+
T Consensus       167 l~~a~~N~~ln~~-~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~  216 (309)
T d2igta1         167 IGWAKENQVLAGL-EQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFG  216 (309)
T ss_dssp             HHHHHHHHHHHTC-TTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEE
T ss_pred             HHHHHHhhhhhcc-cCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCccc
Confidence            9999999998532 1246999999999876543   257999999999653

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.71  E-value=3.7e-18  Score=149.80  Aligned_cols=115  Identities=17%  Similarity=0.243  Sum_probs=93.7

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc
Q 044572          286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL  365 (457)
Q Consensus       286 ~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~  365 (457)
                      +.+++++..++ +|.+|||+|||||.+|+.++. +|+++|++||.++.|++.+++|++.+  +..++++++++|+.+++.
T Consensus         3 e~~fn~l~~~~-~g~~vlDl~~GtG~~~iea~~-rga~~v~~ve~~~~a~~~~~~n~~~~--~~~~~~~ii~~D~~~~l~   78 (152)
T d2esra1           3 GAIFNMIGPYF-NGGRVLDLFAGSGGLAIEAVS-RGMSAAVLVEKNRKAQAIIQDNIIMT--KAENRFTLLKMEAERAID   78 (152)
T ss_dssp             HHHHHHHCSCC-CSCEEEEETCTTCHHHHHHHH-TTCCEEEEECCCHHHHHHHHHHHHTT--TCGGGEEEECSCHHHHHH
T ss_pred             HHHHHHHHhhC-CCCeEEEcCCccCHHHHHHHH-hCcceeeeehhchhhhhhhhhhhhhc--ccccchhhhccccccccc
Confidence            56677776655 589999999999999999886 57889999999999999999999984  445679999999988765


Q ss_pred             cccCCccEEEECCCCC-CccHHHHHHHHhcC--CCCcEEEEe
Q 044572          366 SWLVGSDVLVVDPPRK-GLDSSLVHALQSIG--SAERKAKSL  404 (457)
Q Consensus       366 ~~~~~~D~vi~DPPR~-Gl~~~v~~~l~~~~--~~~~ivyvs  404 (457)
                      ...++||+|++|||+. +....+++.+...+  .++.+++++
T Consensus        79 ~~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          79 CLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             HBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ccccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence            5557899999999964 44556777776542  368888987

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=1.2e-16  Score=152.01  Aligned_cols=142  Identities=19%  Similarity=0.143  Sum_probs=108.3

Q ss_pred             eEEEeeccCeEEE-eeeeEEEEECC--CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEE
Q 044572          251 RWRHLLGETDFWE-NVGGIDISLAP--SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKC  327 (457)
Q Consensus       251 ~~~~l~G~~~~~~-~~~g~~~~i~~--~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~g  327 (457)
                      .+++|+|....+. ..+|+.|.+++  ..|++.|.....++.    +.+.+|++|||+|||+|.||+.+|+. ++.+|++
T Consensus        61 ~~~~l~G~~~~~~~~E~g~~~~~d~~~~~f~~~~~~er~ri~----~~~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~a  135 (260)
T d2frna1          61 DYELLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERVRMA----KVAKPDELVVDMFAGIGHLSLPIAVY-GKAKVIA  135 (260)
T ss_dssp             -CEEEECSCCEEEEEETTEEEEEETTTSCCCGGGHHHHHHHH----HHCCTTCEEEETTCTTTTTHHHHHHH-TCCEEEE
T ss_pred             cceecCCCCceeEEEecCeeEEeccccccEecCCHHHHHHHH----hhcCCccEEEECcceEcHHHHHHHHh-CCcEEEE
Confidence            4678999876543 56899999986  568888776655443    34668999999999999999999986 4569999


Q ss_pred             EeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          328 VEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       328 VE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      ||+|+.|++.|++|++.|  +..++++++++|+.++...  ..||.|++|||..... -+-.++..++ +++++.+
T Consensus       136 vd~n~~a~~~~~~N~~~n--~l~~~v~~~~~D~~~~~~~--~~~D~Ii~~~p~~~~~-~l~~a~~~l~-~gG~lh~  205 (260)
T d2frna1         136 IEKDPYTFKFLVENIHLN--KVEDRMSAYNMDNRDFPGE--NIADRILMGYVVRTHE-FIPKALSIAK-DGAIIHY  205 (260)
T ss_dssp             ECCCHHHHHHHHHHHHHT--TCTTTEEEECSCTTTCCCC--SCEEEEEECCCSSGGG-GHHHHHHHEE-EEEEEEE
T ss_pred             ecCCHHHHHHHHHHHHHh--CCCceEEEEEcchHHhccC--CCCCEEEECCCCchHH-HHHHHHhhcC-CCCEEEE
Confidence            999999999999999984  4456799999999887543  5799999999865432 2334555554 5666644

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.1e-16  Score=144.69  Aligned_cols=118  Identities=22%  Similarity=0.301  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572          282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS  361 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~  361 (457)
                      ...-|.+++.+...+ .+.+|||||||||.+|+.++. +|+++|++||.|+.+++.+++|++.+   ...+++++++|+.
T Consensus        28 ~~vre~lfn~l~~~~-~~~~vLDlfaGsG~~gieals-rGa~~v~~VE~~~~a~~~~k~N~~~~---~~~~~~ii~~d~~  102 (183)
T d2fpoa1          28 DRVRETLFNWLAPVI-VDAQCLDCFAGSGALGLEALS-RYAAGATLIEMDRAVSQQLIKNLATL---KAGNARVVNSNAM  102 (183)
T ss_dssp             HHHHHHHHHHHHHHH-TTCEEEETTCTTCHHHHHHHH-TTCSEEEEECSCHHHHHHHHHHHHHT---TCCSEEEECSCHH
T ss_pred             HHHHHHHHhhhhccc-chhhhhhhhccccceeeeEEe-cCcceeEEEEEeechhhHHHHHHhhc---cccceeeeeeccc
Confidence            345567777666544 578999999999999999886 57899999999999999999999873   3468899999998


Q ss_pred             cCcccccCCccEEEECCCCC-CccHHHHHHHHhcC--CCCcEEEEe
Q 044572          362 IEPLSWLVGSDVLVVDPPRK-GLDSSLVHALQSIG--SAERKAKSL  404 (457)
Q Consensus       362 ~~~~~~~~~~D~vi~DPPR~-Gl~~~v~~~l~~~~--~~~~ivyvs  404 (457)
                      +++......||+|++|||+. +...++++.+....  .++.++++.
T Consensus       103 ~~l~~~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         103 SFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             HHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ccccccccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence            87655456799999999964 56667888887642  367889987

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.6e-16  Score=152.00  Aligned_cols=120  Identities=19%  Similarity=0.218  Sum_probs=99.7

Q ss_pred             eEEEeeccCeEEEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCC-CCCeEEEEcccccHHHHHHHhhCCCCEEEEEe
Q 044572          251 RWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP-YGASVTDLYAGAGVIGLSLAAARKCRSVKCVE  329 (457)
Q Consensus       251 ~~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~-~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE  329 (457)
                      +..++.|...    +.|++|.++++.|..  +..+|.|++.+.+... .+.+|||+|||+|.+++.+|......+|+|+|
T Consensus        66 PlqYI~G~~~----F~~~~~~v~~~VlIP--RpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avD  139 (274)
T d2b3ta1          66 PIAHLTGVRE----FWSLPLFVSPATLIP--RPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVD  139 (274)
T ss_dssp             CHHHHSCEEE----ETTEEEECCTTSCCC--CTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEEC
T ss_pred             ChhhhcCcEE----EeeeEEEEecccccc--ccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeecc
Confidence            3445555553    679999999999996  6788888888877654 56789999999999999999877778999999


Q ss_pred             CCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCC
Q 044572          330 INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK  381 (457)
Q Consensus       330 ~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~  381 (457)
                      +|+.|++.|++|++.+   +.+|++|+++|.++.+.  ..+||+||.|||+-
T Consensus       140 is~~Al~~A~~Na~~~---~~~~v~~~~~d~~~~~~--~~~fDlIvsNPPYi  186 (274)
T d2b3ta1         140 RMPDAVSLAQRNAQHL---AIKNIHILQSDWFSALA--GQQFAMIVSNPPYI  186 (274)
T ss_dssp             SSHHHHHHHHHHHHHH---TCCSEEEECCSTTGGGT--TCCEEEEEECCCCB
T ss_pred             chhHHHhHHHHHHHHh---CcccceeeecccccccC--CCceeEEEecchhh
Confidence            9999999999999984   34689999999877543  25799999999974

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.62  E-value=2.1e-16  Score=142.55  Aligned_cols=119  Identities=15%  Similarity=0.215  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572          282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS  361 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~  361 (457)
                      ...-|.+++++...+ +|.+|||||||||.+|+.++. +|+++|++||.|+++++.+++|++.+  +..++++++++|++
T Consensus        26 ~~vrealFn~l~~~~-~~~~vLDlfaGsG~~g~ea~s-rGa~~v~~ve~~~~a~~~~~~N~~~~--~~~~~~~i~~~D~~  101 (182)
T d2fhpa1          26 DKVKESIFNMIGPYF-DGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAIT--KEPEKFEVRKMDAN  101 (182)
T ss_dssp             HHHHHHHHHHHCSCC-SSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHH--TCGGGEEEEESCHH
T ss_pred             HHHHHHHHHHHHHhc-CCCEEEEcccccccccceeee-cchhHHHHHHHHHHHHHHHHHHhhhh--hcccccccccccch
Confidence            356677777765544 589999999999999999887 57899999999999999999999874  34568999999998


Q ss_pred             cCcccc---cCCccEEEECCCCC-CccHHHHHHHHhc--CCCCcEEEEe
Q 044572          362 IEPLSW---LVGSDVLVVDPPRK-GLDSSLVHALQSI--GSAERKAKSL  404 (457)
Q Consensus       362 ~~~~~~---~~~~D~vi~DPPR~-Gl~~~v~~~l~~~--~~~~~ivyvs  404 (457)
                      +++...   ...||+|++|||+. +...++++.+.+.  -.++.++++.
T Consensus       102 ~~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1         102 RALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             hhhhhhcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            866442   24799999999974 4455677777653  2377888887

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.58  E-value=2.5e-14  Score=130.69  Aligned_cols=128  Identities=23%  Similarity=0.257  Sum_probs=94.7

Q ss_pred             CCCCHHHHHHHHHHHHhhCC-CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEE
Q 044572          278 GQANTRAFDILLRKLQKYVP-YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH  356 (457)
Q Consensus       278 fQ~n~~~~~~l~~~i~~~~~-~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~  356 (457)
                      |++++..+..++..+...-. +|.+|||+|||+|.+++.++. .|+.+|+|||+|+.+++.|++|++.++    .+.+++
T Consensus        25 y~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~-~g~~~v~~vdi~~~~~~~a~~N~~~~~----~~~~~~   99 (201)
T d1wy7a1          25 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALL-LGAKEVICVEVDKEAVDVLIENLGEFK----GKFKVF   99 (201)
T ss_dssp             CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHTGGGT----TSEEEE
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHH-cCCCEEEEEcCcHHHHHHHHHHHHHcC----CCceEE
Confidence            56678777777765554322 689999999999999999886 567899999999999999999998732    467899


Q ss_pred             EccCCcCcccccCCccEEEECCCCCC----ccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHH
Q 044572          357 NADNSIEPLSWLVGSDVLVVDPPRKG----LDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILR  422 (457)
Q Consensus       357 ~~d~~~~~~~~~~~~D~vi~DPPR~G----l~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~  422 (457)
                      .+|+...    ..+||+||+|||+..    .+...+.....   ...++|..     +......++++..
T Consensus       100 ~~d~~~~----~~~fD~Vi~nPP~~~~~~~~d~~~l~~~~~---~~~~v~~i-----h~~~~~~~~~i~~  157 (201)
T d1wy7a1         100 IGDVSEF----NSRVDIVIMNPPFGSQRKHADRPFLLKAFE---ISDVVYSI-----HLAKPEVRRFIEK  157 (201)
T ss_dssp             ESCGGGC----CCCCSEEEECCCCSSSSTTTTHHHHHHHHH---HCSEEEEE-----EECCHHHHHHHHH
T ss_pred             ECchhhh----CCcCcEEEEcCccccccccccHHHHHHHHh---hcccchhc-----ccchHHHHHHHHH
Confidence            9998654    467999999999743    33333333322   35678876     6666666666553

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.57  E-value=4.4e-15  Score=133.86  Aligned_cols=119  Identities=19%  Similarity=0.217  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572          283 RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI  362 (457)
Q Consensus       283 ~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~  362 (457)
                      ..-|.+++++...+ .+.+|||||||||++|++++. +|+++|+.||.|..+++..++|++.++. ......+++.|+.+
T Consensus        29 ~vrealFn~l~~~~-~~~~vLDlFaGsG~~glEalS-RGA~~v~fVE~~~~a~~~ik~Ni~~l~~-~~~~~~~~~~d~~~  105 (183)
T d2ifta1          29 RVKETLFNWLMPYI-HQSECLDGFAGSGSLGFEALS-RQAKKVTFLELDKTVANQLKKNLQTLKC-SSEQAEVINQSSLD  105 (183)
T ss_dssp             HHHHHHHHHHHHHH-TTCEEEETTCTTCHHHHHHHH-TTCSEEEEECSCHHHHHHHHHHHHHTTC-CTTTEEEECSCHHH
T ss_pred             HHHHHHHHHhhhhc-ccceEeecccCccceeeeeee-ecceeeEEeecccchhhhHhhHHhhhcc-cccccccccccccc
Confidence            34566677665544 588999999999999999996 6799999999999999999999998642 23457788888766


Q ss_pred             Ccccc--cCCccEEEECCCCC-CccHHHHHHHHhcC--CCCcEEEEe
Q 044572          363 EPLSW--LVGSDVLVVDPPRK-GLDSSLVHALQSIG--SAERKAKSL  404 (457)
Q Consensus       363 ~~~~~--~~~~D~vi~DPPR~-Gl~~~v~~~l~~~~--~~~~ivyvs  404 (457)
                      ++...  ...||+|++|||+. ++..++++.+....  .++.++++.
T Consensus       106 ~l~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE  152 (183)
T d2ifta1         106 FLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVE  152 (183)
T ss_dssp             HTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cccccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEE
Confidence            54322  24699999999975 45567788777643  368899987

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.55  E-value=5e-14  Score=127.76  Aligned_cols=149  Identities=15%  Similarity=0.171  Sum_probs=102.1

Q ss_pred             eeeeEE--EEECCCCCCCCCHH-HHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572          264 NVGGID--ISLAPSSFGQANTR-AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK  340 (457)
Q Consensus       264 ~~~g~~--~~i~~~~FfQ~n~~-~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~  340 (457)
                      .+.|..  |.-.++.|.+.+.. .++.|++.+.  ..++++|||+|||+|.+++.+|..  +.+|+++|+|+.|++.|++
T Consensus        17 ~~~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~--~~~v~~iD~s~~~i~~a~~   92 (194)
T d1dusa_          17 ILRGKKLKFKTDSGVFSYGKVDKGTKILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKE   92 (194)
T ss_dssp             EETTEEEEEEEETTSTTTTSCCHHHHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHH
T ss_pred             EECCeeEEEEcCCCccCCCCcCHHHHHHHHhCC--cCCCCeEEEEeecCChhHHHHHhh--ccccceeeeccccchhHHH
Confidence            344544  44467888876643 3444444321  236899999999999999999975  4599999999999999999


Q ss_pred             HHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccH---HHHHHHHhcCCCCcEEEEeccCCCCCchhchh
Q 044572          341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDS---SLVHALQSIGSAERKAKSLSESSSSMVKEEKR  417 (457)
Q Consensus       341 Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~---~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~  417 (457)
                      |++.++. ...+++++.+|+.+.+.  .+.||+|++|||......   .+++.+.++-.+++++++.     +......+
T Consensus        93 n~~~~~l-~~~~i~~~~~d~~~~~~--~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~-----~~~~~~~~  164 (194)
T d1dusa_          93 NIKLNNL-DNYDIRVVHSDLYENVK--DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV-----IQTKQGAK  164 (194)
T ss_dssp             HHHHTTC-TTSCEEEEECSTTTTCT--TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE-----EESTHHHH
T ss_pred             HHHHhCC-ccceEEEEEcchhhhhc--cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEE-----EeCcCCHH
Confidence            9988532 23469999999977543  357999999999654322   3444444433477777776     44444444


Q ss_pred             hHHHHHH
Q 044572          418 PWILRAK  424 (457)
Q Consensus       418 ~~~~~~~  424 (457)
                      .+.....
T Consensus       165 ~~~~~l~  171 (194)
T d1dusa_         165 SLAKYMK  171 (194)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.54  E-value=3.9e-14  Score=128.63  Aligned_cols=111  Identities=17%  Similarity=0.171  Sum_probs=84.1

Q ss_pred             CCCCHHHHHHHHHHHHhhCC-CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEE
Q 044572          278 GQANTRAFDILLRKLQKYVP-YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH  356 (457)
Q Consensus       278 fQ~n~~~~~~l~~~i~~~~~-~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~  356 (457)
                      |+++.+.+..++..+...-. +|++|||+|||+|.+++.++. .++++|+|||++++|++.|++|++        ++.|+
T Consensus        27 y~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~-~ga~~V~~vDid~~a~~~ar~N~~--------~~~~~   97 (197)
T d1ne2a_          27 YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYL-LGAESVTAFDIDPDAIETAKRNCG--------GVNFM   97 (197)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHH-TTBSEEEEEESCHHHHHHHHHHCT--------TSEEE
T ss_pred             CCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHH-cCCCcccccccCHHHHHHHHHccc--------cccEE
Confidence            45567888888766655422 689999999999999998887 467899999999999999999864        35899


Q ss_pred             EccCCcCcccccCCccEEEECCCC----CCccHHHHHHHHhcCCCCcEEEEe
Q 044572          357 NADNSIEPLSWLVGSDVLVVDPPR----KGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       357 ~~d~~~~~~~~~~~~D~vi~DPPR----~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++|+.+.    .++||+||+|||.    .+.+..+++....   ...++|.-
T Consensus        98 ~~D~~~l----~~~fD~Vi~NPPfg~~~~~~D~~fl~~a~~---~~~~iy~i  142 (197)
T d1ne2a_          98 VADVSEI----SGKYDTWIMNPPFGSVVKHSDRAFIDKAFE---TSMWIYSI  142 (197)
T ss_dssp             ECCGGGC----CCCEEEEEECCCC-------CHHHHHHHHH---HEEEEEEE
T ss_pred             EEehhhc----CCcceEEEeCcccchhhhhchHHHHHHHHh---cCCeEEEe
Confidence            9998653    3679999999996    3445455554433   35678865

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.54  E-value=4.1e-15  Score=132.59  Aligned_cols=118  Identities=19%  Similarity=0.171  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572          283 RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI  362 (457)
Q Consensus       283 ~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~  362 (457)
                      ..-|.|++++...+.+|.+|||+|||+|.+|+.++.+ |+ +|++||.|+++++.+++|++.+  +..+++....+|.+.
T Consensus        26 ~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~-ga-~vv~vD~~~~a~~~~~~N~~~~--~~~~~v~~~~~d~~~  101 (171)
T d1ws6a1          26 RLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE-GW-EAVLVEKDPEAVRLLKENVRRT--GLGARVVALPVEVFL  101 (171)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT-TC-EEEEECCCHHHHHHHHHHHHHH--TCCCEEECSCHHHHH
T ss_pred             HHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhc-cc-hhhhcccCHHHHhhhhHHHHhh--ccccceeeeehhccc
Confidence            4567888888777778999999999999999998874 44 7999999999999999999985  333455544444432


Q ss_pred             Ccc-cccCCccEEEECCCCC-CccHHHHHHHHh-cCCCCcEEEEe
Q 044572          363 EPL-SWLVGSDVLVVDPPRK-GLDSSLVHALQS-IGSAERKAKSL  404 (457)
Q Consensus       363 ~~~-~~~~~~D~vi~DPPR~-Gl~~~v~~~l~~-~~~~~~ivyvs  404 (457)
                      ... .....||+|++|||+. ++...+.+.+.. +-.+++++++.
T Consensus       102 ~~~~~~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1         102 PEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             HHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             ccccccCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence            111 1125799999999964 555544433332 22467788886

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.53  E-value=2e-14  Score=129.55  Aligned_cols=102  Identities=18%  Similarity=0.208  Sum_probs=80.4

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .++++|||+|||+|.+++.+|+.  +.+|+|||+++++++.|++|++.+  +..+|++++++|+.+.... ...||+|++
T Consensus        32 ~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~--gl~~~v~~~~gda~~~~~~-~~~~D~v~~  106 (186)
T d1l3ia_          32 GKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRH--GLGDNVTLMEGDAPEALCK-IPDIDIAVV  106 (186)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHT--TCCTTEEEEESCHHHHHTT-SCCEEEEEE
T ss_pred             CCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHc--CCCcceEEEECchhhcccc-cCCcCEEEE
Confidence            47999999999999999999975  469999999999999999999984  3457999999998775433 368999999


Q ss_pred             CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 DPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.+..... ++++.+.+.-++++.+.++
T Consensus       107 ~~~~~~~~-~~~~~~~~~LkpgG~lvi~  133 (186)
T d1l3ia_         107 GGSGGELQ-EILRIIKDKLKPGGRIIVT  133 (186)
T ss_dssp             SCCTTCHH-HHHHHHHHTEEEEEEEEEE
T ss_pred             eCccccch-HHHHHHHHHhCcCCEEEEE
Confidence            99876654 4555555433355555554

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=1e-13  Score=131.90  Aligned_cols=121  Identities=17%  Similarity=0.202  Sum_probs=98.5

Q ss_pred             EEEeeccCeEEEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEe
Q 044572          252 WRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVE  329 (457)
Q Consensus       252 ~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE  329 (457)
                      ..++.|...    +.|++|.++++.|..  |..+|.|++.+.++..  ...+++|+|||+|.+++.+|.. ...+|+|+|
T Consensus        68 l~YI~g~~~----F~~~~f~v~~~vlIP--RpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~~~~v~a~D  140 (271)
T d1nv8a_          68 LHYILGEKE----FMGLSFLVEEGVFVP--RPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATD  140 (271)
T ss_dssp             HHHHHTEEE----ETTEEEECCTTSCCC--CTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEE
T ss_pred             hhhhcCcEE----EeeeEEEEecCccCc--hhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-ccceeeech
Confidence            344555443    679999999999985  6778999998887653  4568999999999999999875 456899999


Q ss_pred             CCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCC
Q 044572          330 INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK  381 (457)
Q Consensus       330 ~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~  381 (457)
                      +|++|++.|++|++.+  +..+++.++.+|..+......++||+||.|||+-
T Consensus       141 is~~Al~~A~~Na~~~--~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI  190 (271)
T d1nv8a_         141 VSSKAVEIARKNAERH--GVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYV  190 (271)
T ss_dssp             SCHHHHHHHHHHHHHT--TCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCB
T ss_pred             hhhhHHHHHHHHHHHc--CCCceeEEeecccccccccccCcccEEEEccccc
Confidence            9999999999999984  3456788899998876554446899999999974

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.45  E-value=1.5e-13  Score=129.84  Aligned_cols=130  Identities=17%  Similarity=0.167  Sum_probs=96.7

Q ss_pred             eeEEEEECCC-CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          266 GGIDISLAPS-SFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       266 ~g~~~~i~~~-~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      ....+.++|+ +|-..+.+.+..+++.+.++..+|++|||+|||+|.+++.+++. + .+|+|||+|+.|++.|++|++.
T Consensus        87 ~~~~i~i~pg~aFGTG~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~-g-~~V~gvDis~~av~~A~~na~~  164 (254)
T d2nxca1          87 AEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL-G-GKALGVDIDPMVLPQAEANAKR  164 (254)
T ss_dssp             SSEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-T-CEEEEEESCGGGHHHHHHHHHH
T ss_pred             cceEEEEccccccCccccchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc-C-CEEEEEECChHHHHHHHHHHHH
Confidence            3567888885 78888889999999999888888999999999999999999875 4 4899999999999999999998


Q ss_pred             CCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       345 ~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++   . +++++++|+.+...  .++||+|+.+-...-+ .++++.+.+.-.+++.+++|
T Consensus       165 n~---~-~~~~~~~d~~~~~~--~~~fD~V~ani~~~~l-~~l~~~~~~~LkpGG~lilS  217 (254)
T d2nxca1         165 NG---V-RPRFLEGSLEAALP--FGPFDLLVANLYAELH-AALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             TT---C-CCEEEESCHHHHGG--GCCEEEEEEECCHHHH-HHHHHHHHHHEEEEEEEEEE
T ss_pred             cC---C-ceeEEecccccccc--ccccchhhhccccccH-HHHHHHHHHhcCCCcEEEEE
Confidence            42   2 45789999865432  3689999987432211 23455554433467777776

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.8e-12  Score=119.87  Aligned_cols=115  Identities=14%  Similarity=0.023  Sum_probs=83.8

Q ss_pred             eeEEEEECCCCCCCC--CHHHHHHHHHHHHhhCC----CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH
Q 044572          266 GGIDISLAPSSFGQA--NTRAFDILLRKLQKYVP----YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE  339 (457)
Q Consensus       266 ~g~~~~i~~~~FfQ~--n~~~~~~l~~~i~~~~~----~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~  339 (457)
                      .|+.|.++++.....  ++..+..++..+.....    +..++||+|||+|.+++.+|.+....+|+|+|++++|++.|+
T Consensus        23 ~gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~  102 (250)
T d2h00a1          23 FGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAK  102 (250)
T ss_dssp             HCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHH
T ss_pred             cCceEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHH
Confidence            366778888888762  23334444444433221    345899999999999999998755569999999999999999


Q ss_pred             HHHhhCCCCCCCcEEEEEccCCcCccc-----ccCCccEEEECCCCCC
Q 044572          340 KTVSRLPKSVDGNISWHNADNSIEPLS-----WLVGSDVLVVDPPRKG  382 (457)
Q Consensus       340 ~Na~~~~~~~~~nv~~~~~d~~~~~~~-----~~~~~D~vi~DPPR~G  382 (457)
                      +|++.|  +..+++.++..+....+..     ....||+||.|||+.-
T Consensus       103 ~N~~~n--~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~  148 (250)
T d2h00a1         103 KNVEQN--NLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFA  148 (250)
T ss_dssp             HHHHHT--TCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-
T ss_pred             HHHHHh--CCCcceeeeeeccHHhhhhhhhhcccCceeEEEecCcccc
Confidence            999985  4567888888776544322     1246999999999864

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.24  E-value=2.6e-11  Score=112.36  Aligned_cols=103  Identities=14%  Similarity=0.067  Sum_probs=76.4

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      +++|++|||+|||+|.++..+++..  .+|+|||+|+.+++.|+++++.+   ..+|+.|+++|+++.... .+.||+|+
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~---~~~~~~~~~~d~~~~~~~-~~~fD~v~   87 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEK---GVENVRFQQGTAESLPFP-DDSFDIIT   87 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHH---TCCSEEEEECBTTBCCSC-TTCEEEEE
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhccc---cccccccccccccccccc-ccccceee
Confidence            3589999999999999999999864  49999999999999999998873   346899999999875422 36799998


Q ss_pred             ECCCC--CCccHHHHHHHHhcCCCCcEEEEe
Q 044572          376 VDPPR--KGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR--~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +-=--  ..-...+++.+.+.-.+++.++++
T Consensus        88 ~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          88 CRYAAHHFSDVRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeceeecccCHHHHHHHHHHeeCCCcEEEEE
Confidence            62110  000124666665554577766663

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.22  E-value=1.5e-11  Score=115.47  Aligned_cols=130  Identities=17%  Similarity=0.146  Sum_probs=85.1

Q ss_pred             eEEEEE---CCCCCCCCCHHHHHHHHH----HHHhhC--CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHH
Q 044572          267 GIDISL---APSSFGQANTRAFDILLR----KLQKYV--PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQL  336 (457)
Q Consensus       267 g~~~~i---~~~~FfQ~n~~~~~~l~~----~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~  336 (457)
                      |..|.+   .+..|.......++.+|.    .|..++  .+|++|||+|||+|.+++.+|+..+ ..+|+++|.++++++
T Consensus        45 g~~~~i~~p~~~~~~~~~~r~~qiiypkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~  124 (250)
T d1yb2a1          45 GKSFIVSDFSPMYFGRVIRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLK  124 (250)
T ss_dssp             TEEEEEECCCGGGHHHHC------------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHH
T ss_pred             CeEEEEECCCHHHHHhhCCCCCcccCHHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHH
Confidence            444444   345665555555555553    233332  4899999999999999999997633 459999999999999


Q ss_pred             HHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          337 SFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       337 ~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      .|++|++.+  ....|++++.+|+.+.+.  ...||.|++|.|..   .++++.+.+.-.+++.+.+
T Consensus       125 ~A~~n~~~~--~~~~nv~~~~~Di~~~~~--~~~fD~V~ld~p~p---~~~l~~~~~~LKpGG~lv~  184 (250)
T d1yb2a1         125 KAMDNLSEF--YDIGNVRTSRSDIADFIS--DQMYDAVIADIPDP---WNHVQKIASMMKPGSVATF  184 (250)
T ss_dssp             HHHHHHHTT--SCCTTEEEECSCTTTCCC--SCCEEEEEECCSCG---GGSHHHHHHTEEEEEEEEE
T ss_pred             HHHHHHHHh--cCCCceEEEEeeeecccc--cceeeeeeecCCch---HHHHHHHHHhcCCCceEEE
Confidence            999999874  345799999999987643  35799999999853   2344444443335555444

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=3.7e-11  Score=112.16  Aligned_cols=106  Identities=12%  Similarity=0.040  Sum_probs=81.3

Q ss_pred             HHHHHHhh--CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc
Q 044572          288 LLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL  365 (457)
Q Consensus       288 l~~~i~~~--~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~  365 (457)
                      .++.+.+.  +.+|++|||+|||+|.++..+++..+ .+|+|||+|+.+++.|+++++..  +..++++|+.+|+.+...
T Consensus        21 ~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~--gl~~~v~~~~~d~~~~~~   97 (245)
T d1nkva_          21 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEEL--GVSERVHFIHNDAAGYVA   97 (245)
T ss_dssp             HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEESCCTTCCC
T ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHh--hccccchhhhhHHhhccc
Confidence            34455554  34799999999999999999997655 48999999999999999999884  344679999999988642


Q ss_pred             cccCCccEEEE--------CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          366 SWLVGSDVLVV--------DPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       366 ~~~~~~D~vi~--------DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                        .++||+|+.        |++      .+++.+.+.-.+++.+.++
T Consensus        98 --~~~fD~v~~~~~~~~~~d~~------~~l~~~~r~LkPGG~l~i~  136 (245)
T d1nkva_          98 --NEKCDVAACVGATWIAGGFA------GAEELLAQSLKPGGIMLIG  136 (245)
T ss_dssp             --SSCEEEEEEESCGGGTSSSH------HHHHHHTTSEEEEEEEEEE
T ss_pred             --cCceeEEEEEehhhccCCHH------HHHHHHHHHcCcCcEEEEE
Confidence              367999986        443      4666666554466666664

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.19  E-value=4.2e-11  Score=118.78  Aligned_cols=127  Identities=12%  Similarity=0.049  Sum_probs=89.4

Q ss_pred             CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC-------
Q 044572          276 SFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS-------  348 (457)
Q Consensus       276 ~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~-------  348 (457)
                      .||-.....+..+--.+.+.. ++.+|||++||||.+|+..|...++.+|+++|+|++|++.+++|++.|+..       
T Consensus        24 vFYNp~q~~NRDlsvl~~~~~-~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~  102 (375)
T d2dula1          24 VFYNPRMALNRDIVVVLLNIL-NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKG  102 (375)
T ss_dssp             CCCCGGGHHHHHHHHHHHHHH-CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSS
T ss_pred             cccCHHHhhhhHHHHHHHHHh-CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccc
Confidence            798443334433322233333 578999999999999999888778889999999999999999999985311       


Q ss_pred             -----CCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEec
Q 044572          349 -----VDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLS  405 (457)
Q Consensus       349 -----~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~  405 (457)
                           ...++.+.+.|+...+......||+|.+||  .|.....+++..+....++++++++
T Consensus       103 ~~~~~~~~~~~~~~~Da~~~~~~~~~~fDvIDiDP--fGs~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         103 RAILKGEKTIVINHDDANRLMAERHRYFHFIDLDP--FGSPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             EEEEESSSEEEEEESCHHHHHHHSTTCEEEEEECC--SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccceeEeehhhhhhhhHhhcCcCCcccCCC--CCCcHHHHHHHHHHhccCCEEEEEe
Confidence                 112466677777555443345799999999  4555556665544434788999984

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.12  E-value=1.3e-10  Score=109.63  Aligned_cols=118  Identities=19%  Similarity=0.052  Sum_probs=83.8

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .+|.+|||+|||+|.+++.||+..+ ..+|+++|+++++++.|++|++.......+|++++++|+.+.... ...||.|+
T Consensus        95 ~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~-~~~fDaV~  173 (264)
T d1i9ga_          95 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP-DGSVDRAV  173 (264)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC-TTCEEEEE
T ss_pred             CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccccc-CCCcceEE
Confidence            4899999999999999999998744 469999999999999999999864223457999999998764221 36799999


Q ss_pred             ECCCCCCccHHHHHHHH-hcCCCCcEEEEeccCCCCCchhchhhHHHHHH
Q 044572          376 VDPPRKGLDSSLVHALQ-SIGSAERKAKSLSESSSSMVKEEKRPWILRAK  424 (457)
Q Consensus       376 ~DPPR~Gl~~~v~~~l~-~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~  424 (457)
                      +|=|..   .++++.+. .++ +++.+.+.     |---+......+.++
T Consensus       174 ldlp~P---~~~l~~~~~~Lk-pGG~lv~~-----~P~i~Qv~~~~~~l~  214 (264)
T d1i9ga_         174 LDMLAP---WEVLDAVSRLLV-AGGVLMVY-----VATVTQLSRIVEALR  214 (264)
T ss_dssp             EESSCG---GGGHHHHHHHEE-EEEEEEEE-----ESSHHHHHHHHHHHH
T ss_pred             EecCCH---HHHHHHHHhccC-CCCEEEEE-----eCccChHHHHHHHHH
Confidence            998753   13444444 454 45544443     222334445555444

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.11  E-value=1.6e-10  Score=106.18  Aligned_cols=103  Identities=10%  Similarity=0.070  Sum_probs=73.9

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      +.++++|||+|||+|.+++.+++..  .+|+|||+|+++++.|+++++..   ..+|++|+++|+++.... .+.||+|+
T Consensus        13 l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~---~~~~i~~~~~d~~~l~~~-~~~fD~v~   86 (231)
T d1vl5a_          13 LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGN---GHQQVEYVQGDAEQMPFT-DERFHIVT   86 (231)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCC-CCCSC-TTCEEEEE
T ss_pred             CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccc---cccccccccccccccccc-cccccccc
Confidence            3578999999999999999999864  49999999999999999999873   347899999999875422 36799997


Q ss_pred             ECCCC--CCccHHHHHHHHhcCCCCcEEEEe
Q 044572          376 VDPPR--KGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR--~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.==-  ..=...+++.+.++-.+++.+++.
T Consensus        87 ~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~  117 (231)
T d1vl5a_          87 CRIAAHHFPNPASFVSEAYRVLKKGGQLLLV  117 (231)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            63110  000124555555543466655553

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.10  E-value=2.5e-10  Score=104.55  Aligned_cols=100  Identities=15%  Similarity=0.102  Sum_probs=77.0

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEE
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVL  374 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~v  374 (457)
                      +++|++|||+|||+|.++..+|+..+ ..+|+++|+++++++.|++|++.   ...+|+.++++|+.+.... ...||+|
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~---~~~~n~~~~~~d~~~~~~~-~~~fD~I  148 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER---LGIENVIFVCGDGYYGVPE-FSPYDVI  148 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH---TTCCSEEEEESCGGGCCGG-GCCEEEE
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhh---hcccccccccCchHHcccc-ccchhhh
Confidence            35899999999999999999997643 35899999999999999999987   3457899999998775443 3579999


Q ss_pred             EECCCCCCccHHHHHHHHhcCCCCcEEE
Q 044572          375 VVDPPRKGLDSSLVHALQSIGSAERKAK  402 (457)
Q Consensus       375 i~DPPR~Gl~~~v~~~l~~~~~~~~ivy  402 (457)
                      +++-...-+...+.   ..+++.+++|.
T Consensus       149 ~~~~~~~~~p~~l~---~~LkpGG~lv~  173 (213)
T d1dl5a1         149 FVTVGVDEVPETWF---TQLKEGGRVIV  173 (213)
T ss_dssp             EECSBBSCCCHHHH---HHEEEEEEEEE
T ss_pred             hhhccHHHhHHHHH---HhcCCCcEEEE
Confidence            99876544444443   44664455544

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.09  E-value=2.5e-10  Score=104.23  Aligned_cols=104  Identities=16%  Similarity=-0.022  Sum_probs=78.2

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc--ccCCccE
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS--WLVGSDV  373 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~--~~~~~D~  373 (457)
                      +++|++|||+|||+|.++.++|...+..+|+|||+++.+++.|+++++..     .|+.++.+|+......  ....+|+
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~-----~ni~~i~~d~~~~~~~~~~~~~vd~  128 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIVEKVDL  128 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc-----CCceEEEeeccCccccccccceEEE
Confidence            45899999999999999999998776679999999999999999998873     4789999998764221  1245778


Q ss_pred             EEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          374 LVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       374 vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+.|-+...-...++..+.+...+++.+.++
T Consensus       129 v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  159 (209)
T d1nt2a_         129 IYQDIAQKNQIEILKANAEFFLKEKGEVVIM  159 (209)
T ss_dssp             EEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEecccChhhHHHHHHHHHHHhccCCeEEEE
Confidence            8889765444445555555443466666554

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5.8e-10  Score=107.76  Aligned_cols=100  Identities=13%  Similarity=0.069  Sum_probs=73.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++++|||+|||+|.+++.+|+ .|+++|+|+|.++.++. |+++++.+  +..+++.++++|+.+.... ..+||+|+.+
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~-~Ga~~V~aid~s~~~~~-a~~~~~~~--~~~~~i~~~~~~~~~l~~~-~~~~D~Ivse  109 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAK-AGAKKVLGVDQSEILYQ-AMDIIRLN--KLEDTITLIKGKIEEVHLP-VEKVDVIISE  109 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH-TTCSEEEEEESSTHHHH-HHHHHHHT--TCTTTEEEEESCTTTSCCS-CSCEEEEEEC
T ss_pred             CcCEEEEECCCCCHHHHHHHH-cCCCEEEEEeCHHHHHH-HHHHHHHh--CCCccceEEEeeHHHhcCc-cccceEEEEe
Confidence            689999999999999999997 57789999999998875 45555543  4568999999999875432 3689999999


Q ss_pred             CCCC-----CccHHHHHHHHhcCCCCcEEE
Q 044572          378 PPRK-----GLDSSLVHALQSIGSAERKAK  402 (457)
Q Consensus       378 PPR~-----Gl~~~v~~~l~~~~~~~~ivy  402 (457)
                      +.-.     +.-..++.+..++..+++.++
T Consensus       110 ~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         110 WMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             CCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence            8754     333455665554333555443

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=8.7e-10  Score=101.82  Aligned_cols=103  Identities=14%  Similarity=0.010  Sum_probs=80.2

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--cccCCccE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSDV  373 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~~~~~D~  373 (457)
                      .+|++|||+|||+|+++.++|+..| ..+|+|||+++.+++.|+++++..     .|+..+.+|+.....  .....+|+
T Consensus        72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~-----~~~~~i~~d~~~~~~~~~~~~~vD~  146 (227)
T d1g8aa_          72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-----RNIVPILGDATKPEEYRALVPKVDV  146 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-----TTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred             CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc-----CCceEEEEECCCcccccccccceEE
Confidence            4899999999999999999998754 469999999999999999998752     467888888765321  12356899


Q ss_pred             EEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          374 LVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       374 vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+.|.+..+....+++.+....++++.+.++
T Consensus       147 i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         147 IFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            9999998776666777666544467766664

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=6.3e-10  Score=101.24  Aligned_cols=85  Identities=19%  Similarity=0.151  Sum_probs=66.3

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc
Q 044572          286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL  365 (457)
Q Consensus       286 ~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~  365 (457)
                      +.+-..+.++++++.+|||+|||+|.++..+|+.  ..+|+|+|+|+.|++.|++++...+    .++.++++|+.+...
T Consensus        25 ~~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~----~~~~~~~~d~~~l~~   98 (226)
T d1ve3a1          25 ETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRE----SNVEFIVGDARKLSF   98 (226)
T ss_dssp             HHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCTTSCCS
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhcccc----ccccccccccccccc
Confidence            3333344456677889999999999999999985  3489999999999999999887632    457889999987532


Q ss_pred             cccCCccEEEEC
Q 044572          366 SWLVGSDVLVVD  377 (457)
Q Consensus       366 ~~~~~~D~vi~D  377 (457)
                      . .+.||+|++-
T Consensus        99 ~-~~~fD~I~~~  109 (226)
T d1ve3a1          99 E-DKTFDYVIFI  109 (226)
T ss_dssp             C-TTCEEEEEEE
T ss_pred             c-CcCceEEEEe
Confidence            2 3679998873

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.05  E-value=3.5e-10  Score=107.60  Aligned_cols=119  Identities=15%  Similarity=0.034  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHhh--CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEcc
Q 044572          282 TRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD  359 (457)
Q Consensus       282 ~~~~~~l~~~i~~~--~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d  359 (457)
                      ....+.+++.+...  ++++.+|||+|||+|.++..+|+..+ .+|+|||+|+.+++.|+++++..  +..++++|+++|
T Consensus        49 ~~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~i~~a~~~~~~~--gl~~~v~~~~~d  125 (282)
T d2o57a1          49 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQA--GLADNITVKYGS  125 (282)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHH--TCTTTEEEEECC
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCC-cEEEEEeccchhhhhhhcccccc--cccccccccccc
Confidence            34455666666554  34789999999999999999997644 48999999999999999998763  345689999999


Q ss_pred             CCcCcccccCCccEEEECCCC--CCccHHHHHHHHhcCCCCcEEEEe
Q 044572          360 NSIEPLSWLVGSDVLVVDPPR--KGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       360 ~~~~~~~~~~~~D~vi~DPPR--~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.+.... .+.||+|+.-=--  ..-...+++.+.+.-++++.++++
T Consensus       126 ~~~l~~~-~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~  171 (282)
T d2o57a1         126 FLEIPCE-DNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAIT  171 (282)
T ss_dssp             TTSCSSC-TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccc-ccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEE
Confidence            9876422 3679999763210  000124555555543456655554

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.04  E-value=3.4e-10  Score=105.98  Aligned_cols=106  Identities=15%  Similarity=0.017  Sum_probs=77.3

Q ss_pred             HhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCcc
Q 044572          293 QKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSD  372 (457)
Q Consensus       293 ~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D  372 (457)
                      ..+++++++|||+|||+|..+..+++. +.++|+|||+|++|++.|++.++.+  +...++.|+++|+........+.||
T Consensus        19 ~~~~~~~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~--~~~~~v~f~~~D~~~~~~~~~~~fD   95 (252)
T d1ri5a_          19 RLYTKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNM--KRRFKVFFRAQDSYGRHMDLGKEFD   95 (252)
T ss_dssp             HHHCCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTS--CCSSEEEEEESCTTTSCCCCSSCEE
T ss_pred             HHhCCCcCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhc--CCCcceEEEEcchhhhcccccccce
Confidence            345668999999999999999999874 5679999999999999999988763  3345899999999765433346799


Q ss_pred             EEEECCCCCCcc------H---HHHHHHHhcCCCCcEEEEe
Q 044572          373 VLVVDPPRKGLD------S---SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       373 ~vi~DPPR~Gl~------~---~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|++.   ..++      .   .+++.+.+.-.++++++++
T Consensus        96 ~V~~~---~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          96 VISSQ---FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EEEEE---SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEc---ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            99873   1221      1   3445454443466666664

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=4e-10  Score=103.41  Aligned_cols=102  Identities=13%  Similarity=-0.014  Sum_probs=73.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      ++.+|||+|||+|.++..++.. ++.+|+|||+|+.|++.|+++++..   ...+++|+++|+.++... .+.||+|++.
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~ak~~~~~~---~~~~~~f~~~d~~~~~~~-~~~fD~I~~~  134 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLP-LFREVDMVDITEDFLVQAKTYLGEE---GKRVRNYFCCGLQDFTPE-PDSYDVIWIQ  134 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTT-TCSEEEEEESCHHHHHHHHHHTGGG---GGGEEEEEECCGGGCCCC-SSCEEEEEEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHh-cCCEEEEeecCHHHhhccccccccc---cccccccccccccccccc-cccccccccc
Confidence            5689999999999999988753 3579999999999999999998763   346789999999886432 4689999873


Q ss_pred             CCCCCcc----HHHHHHHHhcCCCCcEEEEe
Q 044572          378 PPRKGLD----SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 PPR~Gl~----~~v~~~l~~~~~~~~ivyvs  404 (457)
                      =--.=+.    .++++.+.+...+++.++++
T Consensus       135 ~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~  165 (222)
T d2ex4a1         135 WVIGHLTDQHLAEFLRRCKGSLRPNGIIVIK  165 (222)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccchhhhhhhHHHHHHHhcCCcceEEEE
Confidence            2211111    13555555544466666654

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.02  E-value=8.8e-10  Score=104.22  Aligned_cols=117  Identities=17%  Similarity=0.112  Sum_probs=83.4

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .+|++|||+|||+|.+++.+|+..+ ..+|+++|+++++++.|++|++..  +..+++.+..+|+.....  ...+|.|+
T Consensus       102 ~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~--g~~~~v~~~~~d~~~~~~--~~~~D~V~  177 (266)
T d1o54a_         102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW--GLIERVTIKVRDISEGFD--EKDVDALF  177 (266)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT--TCGGGEEEECCCGGGCCS--CCSEEEEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh--ccccCcEEEecccccccc--ccceeeeE
Confidence            4899999999999999999998643 359999999999999999999984  345789999998755432  25699999


Q ss_pred             ECCCCCCccHHHHHHHH-hcCCCCcEEEEeccCCCCCchhchhhHHHHHHHh
Q 044572          376 VDPPRKGLDSSLVHALQ-SIGSAERKAKSLSESSSSMVKEEKRPWILRAKEA  426 (457)
Q Consensus       376 ~DPPR~Gl~~~v~~~l~-~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~  426 (457)
                      +|-|..   .++++.+. .+++.++++..      |.--.......+.+++.
T Consensus       178 ~d~p~p---~~~l~~~~~~LKpGG~lv~~------~P~~~Qv~~~~~~l~~~  220 (266)
T d1o54a_         178 LDVPDP---WNYIDKCWEALKGGGRFATV------CPTTNQVQETLKKLQEL  220 (266)
T ss_dssp             ECCSCG---GGTHHHHHHHEEEEEEEEEE------ESSHHHHHHHHHHHHHS
T ss_pred             ecCCCH---HHHHHHHHhhcCCCCEEEEE------eCcccHHHHHHHHHHHC
Confidence            998852   23444444 45544444433      32233445555555544

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.01  E-value=2.6e-09  Score=98.78  Aligned_cols=103  Identities=14%  Similarity=-0.032  Sum_probs=75.1

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc--CCccEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL--VGSDVL  374 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~--~~~D~v  374 (457)
                      .+|.+|||||||+|+++.++|.......|+|||+|+.+++.|+++++..     .|+.++.+|+........  ..+|++
T Consensus        73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~-----~ni~~i~~d~~~~~~~~~~~~~v~~i  147 (230)
T d1g8sa_          73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-----ENIIPILGDANKPQEYANIVEKVDVI  147 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-----TTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred             CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh-----cccceEEEeeccCcccccccceeEEe
Confidence            4799999999999999999998765579999999999999999987652     577889999876433222  234566


Q ss_pred             EECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          375 VVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       375 i~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.|-....-...++..+....++++.++++
T Consensus       148 ~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~  177 (230)
T d1g8sa_         148 YEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eccccchHHHHHHHHHHHHhcccCceEEEE
Confidence            677665443344555555443466666665

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=5.8e-10  Score=108.30  Aligned_cols=105  Identities=15%  Similarity=0.086  Sum_probs=74.1

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCC--------CCCCCcEEEEEccCCcCccc
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLP--------KSVDGNISWHNADNSIEPLS  366 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~--------~~~~~nv~~~~~d~~~~~~~  366 (457)
                      +.+|++|||+|||+|.+++.||+..+ ..+|+++|+++++++.|++|++..+        ....+|+.++.+|+.+....
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~  175 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  175 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence            35899999999999999999998644 3599999999999999999987421        12347899999999876443


Q ss_pred             cc-CCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          367 WL-VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       367 ~~-~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      .. ..||.||+|-|..-   +++..+.+.-.+++.+.+
T Consensus       176 ~~~~~fD~V~LD~p~P~---~~l~~~~~~LKpGG~lv~  210 (324)
T d2b25a1         176 IKSLTFDAVALDMLNPH---VTLPVFYPHLKHGGVCAV  210 (324)
T ss_dssp             -----EEEEEECSSSTT---TTHHHHGGGEEEEEEEEE
T ss_pred             cCCCCcceEeecCcCHH---HHHHHHHHhccCCCEEEE
Confidence            32 46999999987421   244444443234544443

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.99  E-value=1.8e-09  Score=97.02  Aligned_cols=103  Identities=19%  Similarity=0.069  Sum_probs=75.2

Q ss_pred             hhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccE
Q 044572          294 KYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDV  373 (457)
Q Consensus       294 ~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~  373 (457)
                      +++. +.+|||+|||+|..++.+++++  .+|+|||+|+.|++.|+++++..   +.+++++..+|+.+...  .+.||+
T Consensus        27 ~~~~-~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~d~~~~~~--~~~fD~   98 (198)
T d2i6ga1          27 KVVA-PGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAE---GLDNLQTDLVDLNTLTF--DGEYDF   98 (198)
T ss_dssp             TTSC-SCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHT---TCTTEEEEECCTTTCCC--CCCEEE
T ss_pred             ccCC-CCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhc---cccchhhhheecccccc--cccccE
Confidence            3444 4599999999999999999863  48999999999999999998873   45689999999877543  467999


Q ss_pred             EEECCCCCCc----cHHHHHHHHhcCCCCcEEEEe
Q 044572          374 LVVDPPRKGL----DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       374 vi~DPPR~Gl----~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+..-.-.-+    -..+++.+.++..+++++++.
T Consensus        99 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~  133 (198)
T d2i6ga1          99 ILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIV  133 (198)
T ss_dssp             EEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            9885432111    123565565544466665554

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.99  E-value=1.5e-09  Score=105.68  Aligned_cols=100  Identities=12%  Similarity=0.058  Sum_probs=76.7

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      +|++|||+|||+|.+++.+|+ .|+++|+|+|.++ +++.|+++++.+  +..++++++++|+.+.... ...+|+|+.+
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~-~Ga~~V~avd~s~-~~~~a~~~~~~~--~~~~~i~~i~~~~~~l~~~-~~~~D~i~se  112 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAK-HGAKHVIGVDMSS-IIEMAKELVELN--GFSDKITLLRGKLEDVHLP-FPKVDIIISE  112 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH-TCCSEEEEEESST-HHHHHHHHHHHT--TCTTTEEEEESCTTTSCCS-SSCEEEEEEC
T ss_pred             CcCEEEEeCCCCCHHHHHHHH-hCCCEEEEEeCCH-HHHHHHHHHHHh--CccccceEEEeehhhccCc-ccceeEEEEE
Confidence            689999999999999999987 5788999999996 668888888874  4567899999999875322 3579999998


Q ss_pred             CCCC-----CccHHHHHHHHhcCCCCcEEE
Q 044572          378 PPRK-----GLDSSLVHALQSIGSAERKAK  402 (457)
Q Consensus       378 PPR~-----Gl~~~v~~~l~~~~~~~~ivy  402 (457)
                      +--.     +....++.+..++..++++++
T Consensus       113 ~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         113 WMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            7633     344456776655444566554

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=9.8e-10  Score=101.31  Aligned_cols=117  Identities=15%  Similarity=0.126  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCC--CCCcEEEEEc
Q 044572          282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKS--VDGNISWHNA  358 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~--~~~nv~~~~~  358 (457)
                      +.....|++.+...+.+|++|||+|||+|..+..+|+..+ ..+|++||+++++++.|++|++..+..  ...++.++.+
T Consensus        60 P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~g  139 (224)
T d1i1na_          60 PHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG  139 (224)
T ss_dssp             HHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES
T ss_pred             hHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEe
Confidence            5555566665544456899999999999999999997644 459999999999999999998753211  2357899999


Q ss_pred             cCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEE
Q 044572          359 DNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAK  402 (457)
Q Consensus       359 d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivy  402 (457)
                      |+...... ...||+|+++---.-+...+   +..+++.+++|.
T Consensus       140 D~~~~~~~-~~~fD~I~~~~~~~~ip~~l---~~~LkpGG~LV~  179 (224)
T d1i1na_         140 DGRMGYAE-EAPYDAIHVGAAAPVVPQAL---IDQLKPGGRLIL  179 (224)
T ss_dssp             CGGGCCGG-GCCEEEEEECSBBSSCCHHH---HHTEEEEEEEEE
T ss_pred             ecccccch-hhhhhhhhhhcchhhcCHHH---HhhcCCCcEEEE
Confidence            98765443 35799999976433343333   345554455544

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.98  E-value=2e-09  Score=98.68  Aligned_cols=107  Identities=10%  Similarity=0.092  Sum_probs=76.3

Q ss_pred             HHHhhCCCCCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc
Q 044572          291 KLQKYVPYGASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL  368 (457)
Q Consensus       291 ~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~  368 (457)
                      .+..++.++.+|||+|||+|.+++.+++..  +..+|+|||+|++|++.|+++++..  +...++++..+|+.+..   .
T Consensus        32 ~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~--~~~~~~~~~~~d~~~~~---~  106 (225)
T d1im8a_          32 LAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY--HSEIPVEILCNDIRHVE---I  106 (225)
T ss_dssp             HHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTS--CCSSCEEEECSCTTTCC---C
T ss_pred             HHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhh--cccchhhhccchhhccc---c
Confidence            334456688999999999999999999742  2458999999999999999998763  34567899999887653   2


Q ss_pred             CCccEEEEC------CCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          369 VGSDVLVVD------PPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       369 ~~~D~vi~D------PPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ..+|+|++.      ++. . ...+++.+.+.-.+++.++++
T Consensus       107 ~~~d~i~~~~~l~~~~~~-d-~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_         107 KNASMVILNFTLQFLPPE-D-RIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             CSEEEEEEESCGGGSCGG-G-HHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccceeeEEeeeccccChh-h-HHHHHHHHHHhCCCCceeecc
Confidence            467887763      110 1 124566665544477766664

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=1.1e-09  Score=105.97  Aligned_cols=100  Identities=15%  Similarity=0.090  Sum_probs=76.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      +|++|||+|||+|.+++.+|+ .|+++|+|||.++. ...|+++++.+  +..++++++++|+.+.... .+.+|+|+.+
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~-~Ga~~V~avd~s~~-~~~a~~~~~~n--~~~~~v~~~~~~~~~~~~~-~~~~D~ivs~  107 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAK-AGARKVIGIECSSI-SDYAVKIVKAN--KLDHVVTIIKGKVEEVELP-VEKVDIIISE  107 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH-TTCSEEEEEECSTT-HHHHHHHHHHT--TCTTTEEEEESCTTTCCCS-SSCEEEEEEC
T ss_pred             CcCEEEEEecCCcHHHHHHHH-hCCCEEEEEcCcHH-HhhhhhHHHHh--CCccccceEeccHHHcccc-cceeEEEeee
Confidence            689999999999999999997 56789999999976 46777888774  4557899999999875422 3679999998


Q ss_pred             CCCCC-----ccHHHHHHHHhcCCCCcEEE
Q 044572          378 PPRKG-----LDSSLVHALQSIGSAERKAK  402 (457)
Q Consensus       378 PPR~G-----l~~~v~~~l~~~~~~~~ivy  402 (457)
                      ..-.+     .-+.+++++.++..++++++
T Consensus       108 ~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         108 WMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            77443     33457776665544555544

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.96  E-value=2.7e-09  Score=96.90  Aligned_cols=104  Identities=13%  Similarity=0.014  Sum_probs=79.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~  376 (457)
                      ++..|||+|||+|.+++.+|+......++|||+++.++..|.++++..   +.+|+.++++|+......+ ...+|.|++
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~---~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i  105 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS---EAQNVKLLNIDADTLTDVFEPGEVKRVYL  105 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHS---CCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHH---hccCchhcccchhhhhcccCchhhhcccc
Confidence            456899999999999999999876789999999999999999999873   4579999999997654322 245776544


Q ss_pred             ---CCCCC-------CccHHHHHHHHhcCCCCcEEEEe
Q 044572          377 ---DPPRK-------GLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       377 ---DPPR~-------Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                         ||--.       =+.+++++.+.+.-.+++++++.
T Consensus       106 ~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         106 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             ccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence               44211       23456777777644578888875

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.96  E-value=1.2e-09  Score=101.39  Aligned_cols=109  Identities=14%  Similarity=-0.010  Sum_probs=74.8

Q ss_pred             HHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc
Q 044572          288 LLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW  367 (457)
Q Consensus       288 l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~  367 (457)
                      +.+.+.+.-.++.+|||+|||+|.+++.+|+.+  .+|+|||.|++|++.|++++...+    .+++|+++|+.++.  .
T Consensus        27 ~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~----~~v~~~~~d~~~~~--~   98 (246)
T d1y8ca_          27 IIEKCVENNLVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQG----LKPRLACQDISNLN--I   98 (246)
T ss_dssp             HHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTT----CCCEEECCCGGGCC--C
T ss_pred             HHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccC----ccceeeccchhhhc--c
Confidence            334444433356899999999999999999863  489999999999999999887632    36899999997753  2


Q ss_pred             cCCccEEEEC-CCCCCc-cH----HHHHHHHhcCCCCcEEEEe
Q 044572          368 LVGSDVLVVD-PPRKGL-DS----SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       368 ~~~~D~vi~D-PPR~Gl-~~----~v~~~l~~~~~~~~ivyvs  404 (457)
                      .+.||+|++= -...-+ +.    .+++.+.++-.+++++.++
T Consensus        99 ~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_          99 NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            3679988861 111101 11    2455555543466665553

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.95  E-value=2.2e-09  Score=98.76  Aligned_cols=110  Identities=19%  Similarity=0.083  Sum_probs=80.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572          281 NTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN  360 (457)
Q Consensus       281 n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~  360 (457)
                      .+.....|++.+ + +.+|++|||+|||+|.++..||+..  .+|++||+++++++.|++|...     ..|+.++.+|.
T Consensus        55 ~p~~~a~ml~~L-~-l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~-----~~nv~~~~~d~  125 (224)
T d1vbfa_          55 ALNLGIFMLDEL-D-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSY-----YNNIKLILGDG  125 (224)
T ss_dssp             CHHHHHHHHHHT-T-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTT-----CSSEEEEESCG
T ss_pred             hhhhHHHHHHHh-h-hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhc-----ccccccccCch
Confidence            344444444432 2 3589999999999999999999874  5999999999999999998764     25899999998


Q ss_pred             CcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          361 SIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       361 ~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      ...... ...||+|+++-...-+...+   +..+++.+++|..
T Consensus       126 ~~g~~~-~~pfD~Iiv~~a~~~ip~~l---~~qLk~GGrLV~p  164 (224)
T d1vbfa_         126 TLGYEE-EKPYDRVVVWATAPTLLCKP---YEQLKEGGIMILP  164 (224)
T ss_dssp             GGCCGG-GCCEEEEEESSBBSSCCHHH---HHTEEEEEEEEEE
T ss_pred             hhcchh-hhhHHHHHhhcchhhhhHHH---HHhcCCCCEEEEE
Confidence            764433 36799999975443344333   3356656666665

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.95  E-value=6.8e-09  Score=94.13  Aligned_cols=121  Identities=14%  Similarity=0.023  Sum_probs=88.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~  376 (457)
                      ....|||+|||+|.+.+.+|+...-..++|||+++.++..|.++++.+   +.+|+.++.+|+.++...+ ...+|.|++
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~---~l~Ni~~~~~da~~l~~~~~~~~~~~i~i  107 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV---GVPNIKLLWVDGSDLTDYFEDGEIDRLYL  107 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH---CCSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhh---ccccceeeecCHHHHhhhccCCceehhcc
Confidence            456899999999999999999766678999999999999999988873   4579999999998765333 245786655


Q ss_pred             ---CC-C------CCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHh
Q 044572          377 ---DP-P------RKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEA  426 (457)
Q Consensus       377 ---DP-P------R~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~  426 (457)
                         || |      |.-+.+++++.+.+.-.+++.+++.     .+.....+...+.....
T Consensus       108 ~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~-----TD~~~Y~~~~le~~~~~  162 (204)
T d1yzha1         108 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK-----TDNRGLFEYSLVSFSQY  162 (204)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE-----ESCHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE-----ECCccHHHHHHHHHHHC
Confidence               34 2      2335567888888765688888886     44344344444444433

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.95  E-value=2.3e-09  Score=99.44  Aligned_cols=99  Identities=15%  Similarity=0.043  Sum_probs=71.0

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      +..+|||+|||+|.+++.+++. + .+|+|||.|+.|++.|+++++..  +  .+++|+++|+.++..  .+.||+|++-
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~-~-~~v~gvD~s~~mi~~a~~~~~~~--~--~~i~~~~~d~~~l~~--~~~fD~I~~~  112 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAER-G-YEVVGLDLHEEMLRVARRKAKER--N--LKIEFLQGDVLEIAF--KNEFDAVTMF  112 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHT--T--CCCEEEESCGGGCCC--CSCEEEEEEC
T ss_pred             CCCEEEEeCCCCCccchhhccc-c-eEEEEEeeccccccccccccccc--c--ccchheehhhhhccc--ccccchHhhh
Confidence            5678999999999999999985 3 38999999999999999998873  2  368999999987643  3579998872


Q ss_pred             C-CCCCcc-H---HHHHHHHhcCCCCcEEEEe
Q 044572          378 P-PRKGLD-S---SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       378 P-PR~Gl~-~---~v~~~l~~~~~~~~ivyvs  404 (457)
                      = --.=++ .   .+++.+.+.-.+++++.++
T Consensus       113 ~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1         113 FSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             SSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence            0 000011 1   3444454443466666654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.93  E-value=2.3e-09  Score=98.11  Aligned_cols=112  Identities=15%  Similarity=0.115  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572          282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS  361 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~  361 (457)
                      +.....|++.+ + +.++++|||+|||+|..+..+|+..+ .+|++||++++.++.|++|++..   +.+|+.++++|..
T Consensus        64 P~~~a~ml~~L-~-l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~---g~~nv~~~~gd~~  137 (215)
T d1jg1a_          64 PHMVAIMLEIA-N-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERA---GVKNVHVILGDGS  137 (215)
T ss_dssp             HHHHHHHHHHH-T-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHT---TCCSEEEEESCGG
T ss_pred             hhhHHHHHHhh-c-cCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHc---CCceeEEEECccc
Confidence            44445554432 2 35899999999999999999998654 47999999999999999999984   4579999999998


Q ss_pred             cCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          362 IEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       362 ~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      +.... ...||+|++.-.-..+...+++   .+++.+++|..
T Consensus       138 ~g~~~-~~pfD~Iiv~~a~~~ip~~l~~---qL~~gGrLv~p  175 (215)
T d1jg1a_         138 KGFPP-KAPYDVIIVTAGAPKIPEPLIE---QLKIGGKLIIP  175 (215)
T ss_dssp             GCCGG-GCCEEEEEECSBBSSCCHHHHH---TEEEEEEEEEE
T ss_pred             cCCcc-cCcceeEEeecccccCCHHHHH---hcCCCCEEEEE
Confidence            75443 4689999997655445444444   45556666664

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=2.6e-09  Score=98.32  Aligned_cols=100  Identities=15%  Similarity=0.080  Sum_probs=70.1

Q ss_pred             HHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCc
Q 044572          292 LQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS  371 (457)
Q Consensus       292 i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~  371 (457)
                      +.++...+.+|||+|||+|.++..++.. + .+|+|||+|+.|++.|++|...         .++.+|+.+... ..+.|
T Consensus        36 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~giD~s~~~l~~a~~~~~~---------~~~~~~~~~l~~-~~~~f  103 (246)
T d2avna1          36 LEEYLKNPCRVLDLGGGTGKWSLFLQER-G-FEVVLVDPSKEMLEVAREKGVK---------NVVEAKAEDLPF-PSGAF  103 (246)
T ss_dssp             HHHHCCSCCEEEEETCTTCHHHHHHHTT-T-CEEEEEESCHHHHHHHHHHTCS---------CEEECCTTSCCS-CTTCE
T ss_pred             HHHhcCCCCEEEEECCCCchhccccccc-c-eEEEEeeccccccccccccccc---------cccccccccccc-ccccc
Confidence            3445567889999999999999999975 3 4899999999999999976321         357889877532 23679


Q ss_pred             cEEEE-CCC---CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          372 DVLVV-DPP---RKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       372 D~vi~-DPP---R~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+|++ ..-   -... ..+++.+.++-.+++++.++
T Consensus       104 D~ii~~~~~~~~~~d~-~~~l~~i~r~Lk~gG~~ii~  139 (246)
T d2avna1         104 EAVLALGDVLSYVENK-DKAFSEIRRVLVPDGLLIAT  139 (246)
T ss_dssp             EEEEECSSHHHHCSCH-HHHHHHHHHHEEEEEEEEEE
T ss_pred             cceeeecchhhhhhhH-HHHHHHHHhhcCcCcEEEEE
Confidence            98875 221   0011 23555555544477777776

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.88  E-value=2.2e-09  Score=95.19  Aligned_cols=79  Identities=14%  Similarity=-0.028  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC---------CCCcEEEEEccCCcCccc
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS---------VDGNISWHNADNSIEPLS  366 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~---------~~~nv~~~~~d~~~~~~~  366 (457)
                      +.++.+|||+|||+|..++.||+++  -+|+|||+|+.|++.|+++++.....         ...++.|+++|..+....
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~   95 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQG--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   95 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHcC--CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence            3579999999999999999999864  39999999999999999987642110         013457888888776544


Q ss_pred             ccCCccEEEE
Q 044572          367 WLVGSDVLVV  376 (457)
Q Consensus       367 ~~~~~D~vi~  376 (457)
                      ....||+|+.
T Consensus        96 ~~~~~D~i~~  105 (201)
T d1pjza_          96 DIGHCAAFYD  105 (201)
T ss_dssp             HHHSEEEEEE
T ss_pred             cccceeEEEE
Confidence            3457888876

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.83  E-value=5.5e-09  Score=97.97  Aligned_cols=122  Identities=13%  Similarity=0.019  Sum_probs=80.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCc
Q 044572          275 SSFGQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGN  352 (457)
Q Consensus       275 ~~FfQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~n  352 (457)
                      ++|-++|....+.. ...++.+.  ++.+|||+|||+|.++..++... +.+|++||.++.+++.|++++..     ..+
T Consensus        69 gg~~~~~~~d~~~s-~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~~-----~~~  141 (254)
T d1xtpa_          69 GGMDHVHDVDIEGS-RNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG-----MPV  141 (254)
T ss_dssp             TTCGGGHHHHHHHH-HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT-----SSE
T ss_pred             CCccccchhhHHHH-HHHHhhCCCCCCCeEEEecccCChhhHHHHhhc-CceEEEEcCCHHHHHhhhccccc-----ccc
Confidence            35656555443332 22333332  56799999999999999877543 56999999999999999987653     246


Q ss_pred             EEEEEccCCcCcccccCCccEEEECCCCCCccH----HHHHHHHhcCCCCcEEEEe
Q 044572          353 ISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDS----SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       353 v~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~----~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++|+++|+.++... .+.||+|++--.-.-+..    ++++.+.+.-.+++.+++.
T Consensus       142 ~~~~~~d~~~~~~~-~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~  196 (254)
T d1xtpa_         142 GKFILASMETATLP-PNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFK  196 (254)
T ss_dssp             EEEEESCGGGCCCC-SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceeEEccccccccC-CCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEE
Confidence            89999999876432 357999988665332322    2344444432356666664

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=6.3e-09  Score=101.23  Aligned_cols=128  Identities=18%  Similarity=0.237  Sum_probs=84.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC-----
Q 044572          273 APSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK-----  347 (457)
Q Consensus       273 ~~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~-----  347 (457)
                      +...+-+.+......+++.+.  +.++++|||+|||+|.+++.+|...++++|+|||+++.+++.|+++++....     
T Consensus       128 ~~~~~~e~~~~~~~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~  205 (328)
T d1nw3a_         128 SPEVYGETSFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWY  205 (328)
T ss_dssp             STTCCCCCCHHHHHHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCchhhhHHHHHHHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhc
Confidence            345566666655555544321  3578999999999999999999887888999999999999999987654210     


Q ss_pred             -CCCCcEEEEEccCCcCcccc-cCCccEEEECCCCCC--ccHHHHHHHHhcCCCCcEEEE
Q 044572          348 -SVDGNISWHNADNSIEPLSW-LVGSDVLVVDPPRKG--LDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       348 -~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~DPPR~G--l~~~v~~~l~~~~~~~~ivyv  403 (457)
                       ....+++|+++|+.+..... ....|+|+++==..+  +...+.+..+.++ +++.+++
T Consensus       206 g~~~~~i~~~~gd~~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LK-pGg~iv~  264 (328)
T d1nw3a_         206 GKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMK-EGGRIVS  264 (328)
T ss_dssp             TCCCCCEEEEECCTTSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCC-TTCEEEE
T ss_pred             cccCCceEEEECcccccccccccCcceEEEEcceecchHHHHHHHHHHHhCC-CCcEEEE
Confidence             12357999999997642211 123588888643222  1122333444455 5555544

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.82  E-value=3.2e-08  Score=93.94  Aligned_cols=112  Identities=11%  Similarity=0.018  Sum_probs=81.7

Q ss_pred             HHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572          286 DILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE  363 (457)
Q Consensus       286 ~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~  363 (457)
                      ...++.+.+.+.  +|++|||+|||.|.+++.+|+..++ +|+|||+|++.++.|++.++..  +...++.+...|..+.
T Consensus        38 ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~--~l~~~~~~~~~d~~~~  114 (280)
T d2fk8a1          38 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASI--DTNRSRQVLLQGWEDF  114 (280)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTS--CCSSCEEEEESCGGGC
T ss_pred             HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhh--ccccchhhhhhhhhhh
Confidence            456677777653  7999999999999999999976564 8999999999999999998874  3446788888776443


Q ss_pred             cccccCCccEEEECCCCC--Ccc--HHHHHHHHhcCCCCcEEEEe
Q 044572          364 PLSWLVGSDVLVVDPPRK--GLD--SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       364 ~~~~~~~~D~vi~DPPR~--Gl~--~~v~~~l~~~~~~~~ivyvs  404 (457)
                          .+.||.|+.-=--.  +-.  +.+++.+.++.++++.+++.
T Consensus       115 ----~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~  155 (280)
T d2fk8a1         115 ----AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ  155 (280)
T ss_dssp             ----CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred             ----ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEE
Confidence                35799876522111  111  35677776655577777764

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=5.5e-09  Score=96.30  Aligned_cols=102  Identities=9%  Similarity=-0.099  Sum_probs=73.9

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi  375 (457)
                      ..|.+|||+|||+|..+..+|+. +..+|+|||+|+.+++.|+++++..    ..++.++.+|+....... ...||.|+
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~-~~~~v~~id~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~fD~i~  126 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLPDGHFDGIL  126 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             cCCCeEEEeeccchHHHHHHHHc-CCCeEEEeCCCHHHHHHHHHHhhhc----cccccccccccccccccccccccccee
Confidence            46889999999999999999974 3468999999999999999998763    246788888876543332 25799999


Q ss_pred             ECCCCCCc-------cHHHHHHHHhcCCCCcEEEE
Q 044572          376 VDPPRKGL-------DSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       376 ~DPPR~Gl-------~~~v~~~l~~~~~~~~ivyv  403 (457)
                      +|......       ...+++.+.++..+++++.+
T Consensus       127 fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~  161 (229)
T d1zx0a1         127 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY  161 (229)
T ss_dssp             ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             ecccccccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence            99975422       12344544443335555544

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.79  E-value=7.8e-09  Score=94.77  Aligned_cols=107  Identities=12%  Similarity=0.145  Sum_probs=75.1

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc
Q 044572          286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL  365 (457)
Q Consensus       286 ~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~  365 (457)
                      +.+++.+..+. ++.+|||+|||+|.++..++..+  .+|+|||+|+++++.|+++..       +++.++++|+.+...
T Consensus         9 ~~~~~~~~~~~-~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~-------~~~~~~~~~~~~~~~   78 (225)
T d2p7ia1           9 PFMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK-------DGITYIHSRFEDAQL   78 (225)
T ss_dssp             HHHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC-------SCEEEEESCGGGCCC
T ss_pred             HHHHHHhhhhC-CCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccc-------ccccccccccccccc
Confidence            34445555555 47789999999999999999753  489999999999999987632       368999999877543


Q ss_pred             cccCCccEEEECCCCCCc--cHHHHHHHH-hcCCCCcEEEEe
Q 044572          366 SWLVGSDVLVVDPPRKGL--DSSLVHALQ-SIGSAERKAKSL  404 (457)
Q Consensus       366 ~~~~~~D~vi~DPPR~Gl--~~~v~~~l~-~~~~~~~ivyvs  404 (457)
                        .+.||+|++-=--.-+  ...+++.+. ++..+++.++++
T Consensus        79 --~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          79 --PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             --SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             --ccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence              4679999762100000  124566665 433477777775

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.76  E-value=2e-08  Score=95.32  Aligned_cols=101  Identities=11%  Similarity=0.067  Sum_probs=73.4

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .+..+|||+|||+|.+++.+|...+ ..+|+|||+|+.+++.|++|++..+    .+++|+++|+.+..  +.+.||+|+
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~----~~~~f~~~d~~~~~--~~~~fD~v~   99 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP----YDSEFLEGDATEIE--LNDKYDIAI   99 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS----SEEEEEESCTTTCC--CSSCEEEEE
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc----cccccccccccccc--ccCCceEEE
Confidence            3578999999999999999997543 3589999999999999999988632    37899999998753  235799998


Q ss_pred             ECCCCCCc--cHHHHHHHHhcCCCCcEEEE
Q 044572          376 VDPPRKGL--DSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       376 ~DPPR~Gl--~~~v~~~l~~~~~~~~ivyv  403 (457)
                      +.---.-+  ...+++.+.+.-.+++.+++
T Consensus       100 ~~~~l~~~~d~~~~l~~~~~~LkpgG~lii  129 (281)
T d2gh1a1         100 CHAFLLHMTTPETMLQKMIHSVKKGGKIIC  129 (281)
T ss_dssp             EESCGGGCSSHHHHHHHHHHTEEEEEEEEE
T ss_pred             EehhhhcCCCHHHHHHHHHHHcCcCcEEEE
Confidence            75321101  12456666554446665554

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=2.3e-08  Score=94.30  Aligned_cols=106  Identities=15%  Similarity=0.138  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHhhCC-CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572          284 AFDILLRKLQKYVP-YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI  362 (457)
Q Consensus       284 ~~~~l~~~i~~~~~-~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~  362 (457)
                      ..+.+...+.+... ++.+|||+|||+|.++..++......+|+|||+|+.|++.|+++.        .+++|+++|+.+
T Consensus        69 l~~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~--------~~~~~~~~d~~~  140 (268)
T d1p91a_          69 LRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY--------PQVTFCVASSHR  140 (268)
T ss_dssp             HHHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC--------TTSEEEECCTTS
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc--------ccccceeeehhh
Confidence            44555666666543 678999999999999999998654468999999999999987642        367999999987


Q ss_pred             CcccccCCccEEEE-CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          363 EPLSWLVGSDVLVV-DPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       363 ~~~~~~~~~D~vi~-DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .... .+.||+|+. .-|..     +.+..+-++ +++.+.++
T Consensus       141 l~~~-~~sfD~v~~~~~~~~-----~~e~~rvLk-pgG~l~~~  176 (268)
T d1p91a_         141 LPFS-DTSMDAIIRIYAPCK-----AEELARVVK-PGGWVITA  176 (268)
T ss_dssp             CSBC-TTCEEEEEEESCCCC-----HHHHHHHEE-EEEEEEEE
T ss_pred             ccCC-CCCEEEEeecCCHHH-----HHHHHHHhC-CCcEEEEE
Confidence            6432 367998874 43432     223333455 66666665

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.76  E-value=2.7e-08  Score=94.74  Aligned_cols=114  Identities=11%  Similarity=-0.029  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572          283 RAFDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN  360 (457)
Q Consensus       283 ~~~~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~  360 (457)
                      ++...+++.+.+.+  .+|++|||+|||.|.+++.+|+..|+ +|+||.+|++.++.|++.++..  +..+++++..+|.
T Consensus        45 eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~--g~~~~v~~~~~d~  121 (285)
T d1kpga_          45 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANS--ENLRSKRVLLAGW  121 (285)
T ss_dssp             HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTC--CCCSCEEEEESCG
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhh--hhhhhhHHHHhhh
Confidence            34456667777655  48999999999999999999987764 9999999999999999988764  4567899999997


Q ss_pred             CcCcccccCCccEEEECCC--CCCcc--HHHHHHHHhcCCCCcEEEE
Q 044572          361 SIEPLSWLVGSDVLVVDPP--RKGLD--SSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       361 ~~~~~~~~~~~D~vi~DPP--R~Gl~--~~v~~~l~~~~~~~~ivyv  403 (457)
                      .+.    ...||.|+.==-  -.|-.  ..+++.+.++.++++.+++
T Consensus       122 ~~~----~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l  164 (285)
T d1kpga_         122 EQF----DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLL  164 (285)
T ss_dssp             GGC----CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred             hcc----cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEE
Confidence            543    357887764111  01111  3466666665556666555

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=8.1e-09  Score=94.98  Aligned_cols=106  Identities=18%  Similarity=-0.026  Sum_probs=71.4

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC--------------CCCCcEEEEEccCCc
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK--------------SVDGNISWHNADNSI  362 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~--------------~~~~nv~~~~~d~~~  362 (457)
                      .++.+|||+|||+|..++.||.. |+ +|+|||+|+.||+.|++++.....              ....+++++++|+.+
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~-G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADR-GH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT-TC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            46889999999999999999985 33 899999999999999987543100              012478999999887


Q ss_pred             CcccccCCccEEEECCCCCC----ccHHHHHHHHhcCCCCcEEEEe
Q 044572          363 EPLSWLVGSDVLVVDPPRKG----LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       363 ~~~~~~~~~D~vi~DPPR~G----l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ........||+|+.-==-..    .....++.+.++-.+++.+++.
T Consensus       122 l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~  167 (229)
T d2bzga1         122 LPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLC  167 (229)
T ss_dssp             GGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEE
Confidence            65444467888864110001    1124555555544456554444

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=6.3e-08  Score=92.48  Aligned_cols=83  Identities=19%  Similarity=0.195  Sum_probs=67.6

Q ss_pred             CCCCeEEEEcccccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc--ccCCccE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAA-RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS--WLVGSDV  373 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~-~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~--~~~~~D~  373 (457)
                      .+|++|||+|||.|+-++++|.. .+..+|+++|+++.-++.+++|++++   +..|+.+...|.......  ....||.
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~---g~~~~~~~~~d~~~~~~~~~~~~~fD~  169 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA---GVSCCELAEEDFLAVSPSDPRYHEVHY  169 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCGGGSCTTCGGGTTEEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhc---CccceeeeehhhhhhcccccccceeeE
Confidence            47999999999999999888864 33468999999999999999999984   457899999887654322  2357999


Q ss_pred             EEECCCCCC
Q 044572          374 LVVDPPRKG  382 (457)
Q Consensus       374 vi~DPPR~G  382 (457)
                      |++|||-+|
T Consensus       170 VL~DaPCSg  178 (293)
T d2b9ea1         170 ILLDPSCSG  178 (293)
T ss_dssp             EEECCCCCC
T ss_pred             EeecCcccc
Confidence            999999554

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.73  E-value=1.3e-08  Score=93.56  Aligned_cols=118  Identities=14%  Similarity=0.097  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC------CCEEEEEeCCHHHHHHHHHHHhhCC--CCCCCcE
Q 044572          282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK------CRSVKCVEINKESQLSFEKTVSRLP--KSVDGNI  353 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~------~~~V~gVE~~~~av~~A~~Na~~~~--~~~~~nv  353 (457)
                      +....+|++.+...+.++++|||+|||+|.++..+|+..+      ..+|++||+++++++.|++|+....  .....|+
T Consensus        64 P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv  143 (223)
T d1r18a_          64 PHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL  143 (223)
T ss_dssp             HHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred             hhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEE
Confidence            4455566655433355899999999999999999987642      1379999999999999999975421  0123689


Q ss_pred             EEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          354 SWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       354 ~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      .++.+|..+.... ...||+|+++-.-.-+...+   +..+++.+++|..
T Consensus       144 ~~~~~d~~~~~~~-~~~fD~Iiv~~a~~~~p~~l---~~~Lk~gG~lV~p  189 (223)
T d1r18a_         144 LIVEGDGRKGYPP-NAPYNAIHVGAAAPDTPTEL---INQLASGGRLIVP  189 (223)
T ss_dssp             EEEESCGGGCCGG-GCSEEEEEECSCBSSCCHHH---HHTEEEEEEEEEE
T ss_pred             EEEeccccccccc-ccceeeEEEEeechhchHHH---HHhcCCCcEEEEE
Confidence            9999998775443 35799999977654444443   3345545566554

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.72  E-value=3.8e-08  Score=93.91  Aligned_cols=115  Identities=10%  Similarity=0.033  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572          283 RAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN  360 (457)
Q Consensus       283 ~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~  360 (457)
                      ++.+.+++.+.+.+.  +|++|||+|||.|.+++.+|...++ +|+||++|++.++.|++.++..  +..+++++...|.
T Consensus        44 ~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~--~l~~~v~~~~~d~  120 (291)
T d1kpia_          44 EAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEV--DSPRRKEVRIQGW  120 (291)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHS--CCSSCEEEEECCG
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhh--ccchhhhhhhhcc
Confidence            344566777777654  8999999999999999999977665 8999999999999999998874  3456788888885


Q ss_pred             CcCcccccCCccEEEE--------CCC-CCCcc--HHHHHHHHhcCCCCcEEEEe
Q 044572          361 SIEPLSWLVGSDVLVV--------DPP-RKGLD--SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       361 ~~~~~~~~~~~D~vi~--------DPP-R~Gl~--~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ..    ..++||.|+.        |+. ..|..  +.+.+.+.++-++++.+++.
T Consensus       121 ~~----~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~  171 (291)
T d1kpia_         121 EE----FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH  171 (291)
T ss_dssp             GG----CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             cc----cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence            32    2367998875        221 12222  35777787766677777764

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.68  E-value=1.9e-08  Score=93.43  Aligned_cols=94  Identities=19%  Similarity=0.159  Sum_probs=69.0

Q ss_pred             CeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCC------CCcEEEEEccCCcCcccccCCccE
Q 044572          300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV------DGNISWHNADNSIEPLSWLVGSDV  373 (457)
Q Consensus       300 ~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~------~~nv~~~~~d~~~~~~~~~~~~D~  373 (457)
                      .+|||+.||.|..++.+|..+  .+|++||.++......+.++++...+.      ..|++++++|+.+++......||+
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~Dv  167 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV  167 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred             CEEEECCCcccHHHHHHHhCC--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCE
Confidence            489999999999999999864  389999999988777776655421111      238999999998877665567999


Q ss_pred             EEECCCCC-----CccHHHHHHHHhcC
Q 044572          374 LVVDPPRK-----GLDSSLVHALQSIG  395 (457)
Q Consensus       374 vi~DPPR~-----Gl~~~v~~~l~~~~  395 (457)
                      |++||+..     .+..+-++.++.+.
T Consensus       168 IYlDPMFp~~~Ksa~~kk~m~~l~~l~  194 (250)
T d2oyra1         168 VYLDPMFPHKQKSALVKKEMRVFQSLV  194 (250)
T ss_dssp             EEECCCCCCCCC-----HHHHHHHHHS
T ss_pred             EEECCCCccccccccchhHHHHHHhhc
Confidence            99999863     23334555566653

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.67  E-value=1.9e-08  Score=97.44  Aligned_cols=123  Identities=10%  Similarity=-0.041  Sum_probs=84.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhC-----CCCEEEEEeCCHHHHHHHHHHHhhCCC
Q 044572          275 SSFGQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAAR-----KCRSVKCVEINKESQLSFEKTVSRLPK  347 (457)
Q Consensus       275 ~~FfQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~-----~~~~V~gVE~~~~av~~A~~Na~~~~~  347 (457)
                      +.||. -+..++.|...+..++.  ++.+|||.+||+|.|.+.+..+.     ...+++|+|+++.+++.|+.|+...+ 
T Consensus        93 g~~~T-P~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~-  170 (328)
T d2f8la1          93 NHQMT-PDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-  170 (328)
T ss_dssp             GGCCC-CHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-
T ss_pred             CeEEC-cHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh-
Confidence            33442 35666666666655443  56789999999999999886431     12379999999999999999988632 


Q ss_pred             CCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccH---------------------HHHHHHHhcCCCCcEEEEe
Q 044572          348 SVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDS---------------------SLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       348 ~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~---------------------~v~~~l~~~~~~~~ivyvs  404 (457)
                         .+..+.++|.....  ...+||+||.|||+.....                     -+..++..+++.+++++|.
T Consensus       171 ---~~~~~~~~d~~~~~--~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~  243 (328)
T d2f8la1         171 ---QKMTLLHQDGLANL--LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV  243 (328)
T ss_dssp             ---CCCEEEESCTTSCC--CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ---hhhhhhcccccccc--ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEe
Confidence               34567788765432  2367999999999632110                     1344556666677777775

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.64  E-value=1.3e-07  Score=87.38  Aligned_cols=108  Identities=15%  Similarity=0.113  Sum_probs=79.1

Q ss_pred             HHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572          287 ILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP  364 (457)
Q Consensus       287 ~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~  364 (457)
                      .+++.+.+.+.  ++++|||+|||+|.+|..++..  +.+|++||+++.+++.++++...     .+|++++++|+.++.
T Consensus         8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~-----~~n~~i~~~D~l~~~   80 (235)
T d1qama_           8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQFK   80 (235)
T ss_dssp             HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGGCC
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhc-----ccchhhhhhhhhhcc
Confidence            44566666653  7899999999999999999986  45999999999999999887543     368999999998753


Q ss_pred             ccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          365 LSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       365 ~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      .. ......||-|-|+.--++ ++..+........++++
T Consensus        81 ~~-~~~~~~vv~NLPYnIss~-il~~ll~~~~~~~~vlm  117 (235)
T d1qama_          81 FP-KNQSYKIFGNIPYNISTD-IIRKIVFDSIADEIYLI  117 (235)
T ss_dssp             CC-SSCCCEEEEECCGGGHHH-HHHHHHHSCCCSEEEEE
T ss_pred             cc-ccccceeeeeehhhhhHH-HHHHHHhhhhhhhhhhh
Confidence            21 123457899999965554 44444433334555554

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=1.6e-07  Score=89.21  Aligned_cols=84  Identities=15%  Similarity=0.114  Sum_probs=64.0

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      .+|++|||+|||-|+=++.+|.......|+++|+++.=++..++|+++.+   ..++.....|...........||.|++
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g---~~~~~~~~~~~~~~~~~~~~~fd~IL~  177 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG---MKATVKQGDGRYPSQWCGEQQFDRILL  177 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccc---ccceeeeccccccchhcccccccEEEE
Confidence            47899999999999999999876545689999999999999999999853   345555554433211112356999999


Q ss_pred             CCCCCCc
Q 044572          377 DPPRKGL  383 (457)
Q Consensus       377 DPPR~Gl  383 (457)
                      |+|-+|.
T Consensus       178 DaPCSg~  184 (284)
T d1sqga2         178 DAPCSAT  184 (284)
T ss_dssp             ECCCCCG
T ss_pred             ecccccc
Confidence            9996654

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4.5e-07  Score=82.66  Aligned_cols=123  Identities=17%  Similarity=0.060  Sum_probs=90.9

Q ss_pred             CCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEE
Q 044572          277 FGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISW  355 (457)
Q Consensus       277 FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~  355 (457)
                      +.+..+++ ..++..+.... ..++|||+|||+|.-++.+|.... -.+|+++|.+++..+.|++|.+..  +..+++++
T Consensus        40 ~~~i~~~~-g~lL~~L~~~~-~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~a--g~~~~i~~  115 (219)
T d2avda1          40 DSMMTCEQ-AQLLANLARLI-QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA--EAEHKIDL  115 (219)
T ss_dssp             GGSCCHHH-HHHHHHHHHHT-TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT--TCTTTEEE
T ss_pred             CcccCHHH-HHHHHHHHHcc-CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhc--CccceEEE
Confidence            34555655 45555555544 468999999999999999997422 359999999999999999999985  34578999


Q ss_pred             EEccCCcCcccc-----cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          356 HNADNSIEPLSW-----LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       356 ~~~d~~~~~~~~-----~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.||+.+.+.+.     ...||+|++|=-......-+-..+..++ +++++.+.
T Consensus       116 ~~Gda~e~l~~~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~-~GGvii~D  168 (219)
T d2avda1         116 RLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLR-PGGILAVL  168 (219)
T ss_dssp             EESCHHHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEE-EEEEEEEE
T ss_pred             EEeehhhcchhhhhhcccCCccEEEEeCCHHHHHHHHHHHHHHhc-CCcEEEEe
Confidence            999997765433     3579999999877665544444445554 77777764

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.46  E-value=1.5e-07  Score=84.27  Aligned_cols=90  Identities=10%  Similarity=0.146  Sum_probs=70.3

Q ss_pred             HHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572          287 ILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP  364 (457)
Q Consensus       287 ~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~  364 (457)
                      .|++.+++++.  +++.+||++||+|..+..++......+|+|+|.+++|++.|+++.+..    .+++.+++++..+..
T Consensus        10 Vll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~----~~r~~~~~~~f~~~~   85 (192)
T d1m6ya2          10 VMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF----SDRVSLFKVSYREAD   85 (192)
T ss_dssp             TTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG----TTTEEEEECCGGGHH
T ss_pred             hHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc----cccccchhHHHhhHH
Confidence            45566666543  789999999999999999998755569999999999999999998763    257999999875531


Q ss_pred             ---ccc-cCCccEEEECCCC
Q 044572          365 ---LSW-LVGSDVLVVDPPR  380 (457)
Q Consensus       365 ---~~~-~~~~D~vi~DPPR  380 (457)
                         ... ...+|.|++|-..
T Consensus        86 ~~~~~~~~~~vdgIl~DlGv  105 (192)
T d1m6ya2          86 FLLKTLGIEKVDGILMDLGV  105 (192)
T ss_dssp             HHHHHTTCSCEEEEEEECSC
T ss_pred             HHHHHcCCCCcceeeeccch
Confidence               111 3579999999664

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.45  E-value=2.1e-07  Score=83.41  Aligned_cols=105  Identities=11%  Similarity=-0.040  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572          282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS  361 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~  361 (457)
                      +......++.+.... ++.+|||+|||+|.++..++      +++|||.|+.+++.|+++          ++.++++|+.
T Consensus        21 ~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~----------~~~~~~~d~~   83 (208)
T d1vlma_          21 RFAYLSELQAVKCLL-PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR----------GVFVLKGTAE   83 (208)
T ss_dssp             HHHHHHHHHHHHHHC-CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT----------TCEEEECBTT
T ss_pred             HHHHHHHHHHHHhhC-CCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc----------cccccccccc
Confidence            333333344454444 46689999999999987774      468999999999988752          4689999998


Q ss_pred             cCcccccCCccEEEECCCC--CCccHHHHHHHHhcCCCCcEEEEe
Q 044572          362 IEPLSWLVGSDVLVVDPPR--KGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       362 ~~~~~~~~~~D~vi~DPPR--~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +.... .+.||+|++.==-  ..-...+++.+.+.-.+++.+++.
T Consensus        84 ~l~~~-~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~  127 (208)
T d1vlma_          84 NLPLK-DESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVG  127 (208)
T ss_dssp             BCCSC-TTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccc-cccccccccccccccccccccchhhhhhcCCCCceEEEE
Confidence            76432 3679999872110  000123555555443466655554

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=8.8e-07  Score=83.48  Aligned_cols=108  Identities=15%  Similarity=0.083  Sum_probs=78.5

Q ss_pred             HHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc
Q 044572          288 LLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL  365 (457)
Q Consensus       288 l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~  365 (457)
                      ++++|.+.+  .+++.|||+|+|.|++|..|++.  +++|++||+|+.+++..++.....  ....|++++.+|+.+.. 
T Consensus         9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~--~~~~~~~~i~~D~l~~~-   83 (278)
T d1zq9a1           9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGT--PVASKLQVLVGDVLKTD-   83 (278)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTS--TTGGGEEEEESCTTTSC-
T ss_pred             HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhh--ccccchhhhHHHHhhhh-
Confidence            344454444  36889999999999999999986  359999999999999999887642  23468999999997653 


Q ss_pred             cccCCccEEEECCCCCCccHHHHHHHHh-cCCCCcEEEE
Q 044572          366 SWLVGSDVLVVDPPRKGLDSSLVHALQS-IGSAERKAKS  403 (457)
Q Consensus       366 ~~~~~~D~vi~DPPR~Gl~~~v~~~l~~-~~~~~~ivyv  403 (457)
                        ...++.||-|.|+.-.++ ++..+.. ......++++
T Consensus        84 --~~~~~~vV~NLPY~Iss~-il~~~~~~~~~~~~~v~m  119 (278)
T d1zq9a1          84 --LPFFDTCVANLPYQISSP-FVFKLLLHRPFFRCAILM  119 (278)
T ss_dssp             --CCCCSEEEEECCGGGHHH-HHHHHHHCSSCCSEEEEE
T ss_pred             --hhhhhhhhcchHHHHHHH-HHHHHHhhCCccceeeEe
Confidence              245679999999965444 4444443 3334444444

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.44  E-value=4.3e-07  Score=84.43  Aligned_cols=73  Identities=12%  Similarity=0.079  Sum_probs=61.1

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      +..+|||+|||+|.+++.++++....+++++|+ +++++.|++++...  +..++++++.+|.++..   ...||+|++
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~~~~rv~~~~~D~~~~~---~~~~D~v~~  152 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE--GLSDRVDVVEGDFFEPL---PRKADAIIL  152 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT--TCTTTEEEEECCTTSCC---SSCEEEEEE
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHh--hcccchhhccccchhhc---ccchhheee
Confidence            568999999999999999998766678999998 67899999998874  44578999999987642   356999987

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=2.7e-07  Score=83.90  Aligned_cols=120  Identities=10%  Similarity=0.026  Sum_probs=82.5

Q ss_pred             CCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044572          279 QANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN  357 (457)
Q Consensus       279 Q~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~  357 (457)
                      ++.++.-+.|...+.. . +.++|||+|||+|..++.+|...+ ..+|++||+++++++.|++|++..  +..++|+++.
T Consensus        39 ~i~~~~G~lL~~lv~~-~-kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~--gl~~~i~l~~  114 (214)
T d2cl5a1          39 NVGDAKGQIMDAVIRE-Y-SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA--GLQDKVTILN  114 (214)
T ss_dssp             SCHHHHHHHHHHHHHH-H-CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHH--TCGGGEEEEE
T ss_pred             ccCHHHHHHHHHHHHh-h-CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHc--CCCccceeee
Confidence            3445554444444443 3 457999999999999999997432 369999999999999999999874  3457899999


Q ss_pred             ccCCcCcccc-----cCCccEEEECCCCCCccH--HHHHHHHhcCCCCcEEEE
Q 044572          358 ADNSIEPLSW-----LVGSDVLVVDPPRKGLDS--SLVHALQSIGSAERKAKS  403 (457)
Q Consensus       358 ~d~~~~~~~~-----~~~~D~vi~DPPR~Gl~~--~v~~~l~~~~~~~~ivyv  403 (457)
                      ||+.+.+..+     ...||+|++|--......  .+.+.+..++ +++++.+
T Consensus       115 Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLk-pGGvIv~  166 (214)
T d2cl5a1         115 GASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLR-KGTVLLA  166 (214)
T ss_dssp             SCHHHHGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEE-EEEEEEE
T ss_pred             ccccccccchhhcccccccceeeecccccccccHHHHHHHhCccC-CCcEEEE
Confidence            9998765443     246999999953322111  1222233344 6776655

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.38  E-value=2e-07  Score=88.51  Aligned_cols=105  Identities=14%  Similarity=-0.037  Sum_probs=65.8

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCC-CCcEEEEEccCCcCccc--ccCCccEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV-DGNISWHNADNSIEPLS--WLVGSDVL  374 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~-~~nv~~~~~d~~~~~~~--~~~~~D~v  374 (457)
                      ++.+|||+|||+|.+++.||+. | .+|+|||+|+.|++.|++++...+... ..+..+..+|.......  ....||+|
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~-g-~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v  133 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEE-G-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV  133 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHc-C-CeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEE
Confidence            5789999999999999999985 4 489999999999999999987632110 01233444443221111  13579988


Q ss_pred             EECC--------CCCCcc--HHHHHHHHhcCCCCcEEEEe
Q 044572          375 VVDP--------PRKGLD--SSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       375 i~DP--------PR~Gl~--~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ++--        +-....  ..+++.+.+.-.+++++.++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  173 (292)
T d1xvaa_         134 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  173 (292)
T ss_dssp             EECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence            7621        111111  13555555544477777665

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.38  E-value=1.2e-06  Score=84.02  Aligned_cols=111  Identities=18%  Similarity=0.133  Sum_probs=81.2

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      .+|++|||+|||.|+=++.+|...+ -..|+++|+++.-++..++|+++.   +..|+.....|.... ......||.|+
T Consensus       115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~---~~~~i~~~~~d~~~~-~~~~~~fD~IL  190 (313)
T d1ixka_         115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL---GVLNVILFHSSSLHI-GELNVEFDKIL  190 (313)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH---TCCSEEEESSCGGGG-GGGCCCEEEEE
T ss_pred             CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHH---Hhhcccccccccccc-ccccccccEEE
Confidence            4799999999999998888876433 358999999999999999999985   346788887776543 22346799999


Q ss_pred             ECCCCCCcc-------------HH------------HHHHHHhcCCCCcEEEEeccCCCCCchhch
Q 044572          376 VDPPRKGLD-------------SS------------LVHALQSIGSAERKAKSLSESSSSMVKEEK  416 (457)
Q Consensus       376 ~DPPR~Gl~-------------~~------------v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~  416 (457)
                      +|+|-+|..             .+            +.+++..+++.+.+||++     |+-....
T Consensus       191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsT-----CSl~~eE  251 (313)
T d1ixka_         191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST-----CSLEPEE  251 (313)
T ss_dssp             EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-----SCCCGGG
T ss_pred             EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEee-----ccCChHh
Confidence            999955432             11            122333445577899998     8765543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=3.4e-07  Score=90.85  Aligned_cols=66  Identities=17%  Similarity=0.145  Sum_probs=51.6

Q ss_pred             CCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          277 FGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       277 FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      +--........+++.+.  +.+|++|||||||+|.+++.+|...++++|+|||+++.+++.|+++++.
T Consensus       197 YGEl~~~~i~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e  262 (406)
T d1u2za_         197 YGELLPNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEE  262 (406)
T ss_dssp             CCCBCHHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHH
Confidence            33344444444443321  3589999999999999999999887888999999999999999998864

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.33  E-value=2.4e-06  Score=78.08  Aligned_cols=120  Identities=14%  Similarity=0.061  Sum_probs=87.3

Q ss_pred             CCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044572          279 QANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN  357 (457)
Q Consensus       279 Q~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~  357 (457)
                      ++..++... +..+.... ..++||++|+++|.-++.+|...+ ..+|+.+|.+++..+.|++|++..  +..++++++.
T Consensus        42 ~~~~~~g~~-L~~L~~~~-~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~--g~~~~i~~~~  117 (227)
T d1susa1          42 TTSADEGQF-LSMLLKLI-NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA--GVDHKIDFRE  117 (227)
T ss_dssp             SCCHHHHHH-HHHHHHHH-TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT--TCGGGEEEEE
T ss_pred             ccCHHHHHH-HHHHHHhc-CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHh--ccccceeeee
Confidence            444555444 44444433 468999999999999999996432 359999999999999999999985  3456899999


Q ss_pred             ccCCcCcccc------cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          358 ADNSIEPLSW------LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       358 ~d~~~~~~~~------~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                      ||+.+.+.++      .+.||+|++|=-......-+-..+..+ .+++++.+
T Consensus       118 g~a~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll-~~gGiii~  168 (227)
T d1susa1         118 GPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLV-KVGGVIGY  168 (227)
T ss_dssp             SCHHHHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHB-CTTCCEEE
T ss_pred             hHHHHHHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhc-CCCcEEEE
Confidence            9998776543      247999999976655444333344444 47777766

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.28  E-value=1.2e-06  Score=84.03  Aligned_cols=108  Identities=11%  Similarity=-0.012  Sum_probs=81.9

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCC--CCCCCcEEEEEccCCcCcccccCCccEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP--KSVDGNISWHNADNSIEPLSWLVGSDVL  374 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~--~~~~~nv~~~~~d~~~~~~~~~~~~D~v  374 (457)
                      +..++||.+|.|.|.....+.+.....+|++||++++.++.|++......  .....+++++.+|+.+++.....+||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            45689999999999999998876556799999999999999998753210  1124689999999998876655689999


Q ss_pred             EECCCC---CC------ccHHHHHHHHhcCCCCcEEEEe
Q 044572          375 VVDPPR---KG------LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       375 i~DPPR---~G------l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+|.+-   .+      .+.+..+.+.+.-.+++++.+-
T Consensus       156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence            999742   11      1456777777655577777664

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.28  E-value=8.2e-08  Score=89.21  Aligned_cols=106  Identities=12%  Similarity=0.072  Sum_probs=76.7

Q ss_pred             HHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc
Q 044572          289 LRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS  366 (457)
Q Consensus       289 ~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~  366 (457)
                      ++.|.+.+  .++++|||+|||+|.+|..|+..  +.+|+|||+|+.+++.++++..     ...|++++++|+.+....
T Consensus        18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~-----~~~n~~ii~~D~l~~~~~   90 (245)
T d1yuba_          18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLK-----LNTRVTLIHQDILQFQFP   90 (245)
T ss_dssp             HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTT-----TCSEEEECCSCCTTTTCC
T ss_pred             HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhh-----hccchhhhhhhhhccccc
Confidence            34455544  36889999999999999999986  4599999999999887765432     236899999999875322


Q ss_pred             ccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572          367 WLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       367 ~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv  403 (457)
                       ...++.||.|-|+.-.++-+.+.+... ....++.+
T Consensus        91 -~~~~~~vv~NLPY~Ist~il~~~l~~~-~~~~~v~m  125 (245)
T d1yuba_          91 -NKQRYKIVGNIPYHLSTQIIKKVVFES-RASDIYLI  125 (245)
T ss_dssp             -CSSEEEEEEECCSSSCHHHHHHHHHHC-CCEEEEEE
T ss_pred             -cceeeeEeeeeehhhhHHHHHHHhhhc-hhhhhhhh
Confidence             235678999999976655555555443 34555444

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=1.1e-06  Score=81.60  Aligned_cols=102  Identities=8%  Similarity=0.127  Sum_probs=72.8

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEcc
Q 044572          280 ANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD  359 (457)
Q Consensus       280 ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d  359 (457)
                      .+....+.+++.+.  ..+++.||++|||.|.+|..|+..  +++|++||+|+.+++..++...     ..+|++++.+|
T Consensus         5 ~d~~~~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~-----~~~~~~ii~~D   75 (252)
T d1qyra_           5 NDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPF-----LGPKLTIYQQD   75 (252)
T ss_dssp             CCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTT-----TGGGEEEECSC
T ss_pred             CCHHHHHHHHHhcC--CCCCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhh-----hccchhHHhhh
Confidence            34445555544432  236889999999999999999975  5699999999999998876322     23689999999


Q ss_pred             CCcCccc-c---cCCccEEEECCCCCCccHHHHHHH
Q 044572          360 NSIEPLS-W---LVGSDVLVVDPPRKGLDSSLVHAL  391 (457)
Q Consensus       360 ~~~~~~~-~---~~~~D~vi~DPPR~Gl~~~v~~~l  391 (457)
                      +.++... +   ....-.||-|.|+.-.++ ++..+
T Consensus        76 ~l~~~~~~~~~~~~~~~~vvgNlPY~Iss~-Il~~l  110 (252)
T d1qyra_          76 AMTFNFGELAEKMGQPLRVFGNLPYNISTP-LMFHL  110 (252)
T ss_dssp             GGGCCHHHHHHHHTSCEEEEEECCTTTHHH-HHHHH
T ss_pred             hhhhcccccccccCCCeEEEecchHHHHHH-HHHHh
Confidence            9875321 1   123458899999986655 44444

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.13  E-value=8e-06  Score=76.67  Aligned_cols=109  Identities=14%  Similarity=0.098  Sum_probs=84.0

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCC-CCCCCcEEEEEccCCcCcccccCCccEE
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP-KSVDGNISWHNADNSIEPLSWLVGSDVL  374 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~-~~~~~nv~~~~~d~~~~~~~~~~~~D~v  374 (457)
                      ....++||-+|.|.|..+..+.+..+..+|+.||++++.++.|++-...+. .....+++++.+|+..++.+..++||+|
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI  152 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence            345689999999999999999976567899999999999999988653211 1124689999999988776655789999


Q ss_pred             EECCCCC-C-----ccHHHHHHHHhcCCCCcEEEEe
Q 044572          375 VVDPPRK-G-----LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       375 i~DPPR~-G-----l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+|++.. |     .+.+..+.+.+.-.+++++..-
T Consensus       153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q  188 (274)
T d1iy9a_         153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (274)
T ss_dssp             EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence            9998742 1     2557788777655577777764

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.1e-06  Score=79.36  Aligned_cols=102  Identities=18%  Similarity=0.197  Sum_probs=63.8

Q ss_pred             eEEEEcccccHHHHHHHhhC-----C-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEE--EEEccCCcCcc-----cc
Q 044572          301 SVTDLYAGAGVIGLSLAAAR-----K-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNIS--WHNADNSIEPL-----SW  367 (457)
Q Consensus       301 ~vLDl~cG~G~~sl~lA~~~-----~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~--~~~~d~~~~~~-----~~  367 (457)
                      +|||+|||+|.++..++...     + ..+++|||.|+.+++.|+++++...  ...++.  +...++.+...     ..
T Consensus        43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS--NLENVKFAWHKETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC--SCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred             eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc--ccccccccchhhhhhhhcchhcccCC
Confidence            79999999999998886531     1 2368999999999999999886532  234444  44444432211     11


Q ss_pred             cCCccEEEECCC--CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          368 LVGSDVLVVDPP--RKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       368 ~~~~D~vi~DPP--R~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .+.||+|++-=-  ...-...+++.+.++..+++++++.
T Consensus       121 ~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~  159 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLII  159 (280)
T ss_dssp             CCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEE
Confidence            357999987111  0000124666666655566666664

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.11  E-value=6.8e-06  Score=76.32  Aligned_cols=73  Identities=15%  Similarity=0.092  Sum_probs=60.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      ...+|||+|||+|.++..+++.....+++++|+ +++++.|+++++..  +..++++++.+|.++..   ...+|+|++
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~--~~~~ri~~~~~d~~~~~---p~~~D~v~~  153 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA--GLADRVTVAEGDFFKPL---PVTADVVLL  153 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--TCTTTEEEEECCTTSCC---SCCEEEEEE
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhc--CCcceeeeeeeeccccc---cccchhhhc
Confidence            567899999999999999998765568999997 88999999998874  34578999999987632   246899887

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.09  E-value=8.1e-06  Score=77.33  Aligned_cols=108  Identities=12%  Similarity=0.022  Sum_probs=81.6

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC-CCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK-SVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~-~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      +.-++||=+|.|.|.+...+++.....+|++||++++.++.|++-...+.. ....+++++.+|+.+++.+...+||+||
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            456899999999999999998765568999999999999999886543210 1246899999999988876667899999


Q ss_pred             ECCCCC--C-----ccHHHHHHHHhcCCCCcEEEEe
Q 044572          376 VDPPRK--G-----LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~--G-----l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|.+..  +     .+.+..+.+.+.-.+++++.+-
T Consensus       168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q  203 (295)
T d1inla_         168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  203 (295)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence            998632  2     2457777777655577777664

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.07  E-value=1.3e-05  Score=75.30  Aligned_cols=117  Identities=12%  Similarity=0.005  Sum_probs=83.3

Q ss_pred             HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCC-------CCCCCcEEEEEc
Q 044572          286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP-------KSVDGNISWHNA  358 (457)
Q Consensus       286 ~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~-------~~~~~nv~~~~~  358 (457)
                      +.|........+..++||-+|+|.|.....+.+. ...+|++||++++.++.|++-...+.       .....+++++.+
T Consensus        60 e~l~~~~l~~~~~p~~vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~  138 (276)
T d1mjfa_          60 EPLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIG  138 (276)
T ss_dssp             HHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEES
T ss_pred             HHhhcchhhcCCCCceEEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEC
Confidence            3343333333446789999999999999888764 56799999999999999987543210       012468999999


Q ss_pred             cCCcCcccccCCccEEEECCCCCC-c-----cHHHHHHHHhcCCCCcEEEEe
Q 044572          359 DNSIEPLSWLVGSDVLVVDPPRKG-L-----DSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       359 d~~~~~~~~~~~~D~vi~DPPR~G-l-----~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+..++.. .++||+||+|.+... .     +.+..+.+.+.-.+++++.+-
T Consensus       139 Da~~~l~~-~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         139 DGFEFIKN-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             CHHHHHHH-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             hHHHHHhc-cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence            99887654 468999999988531 1     345677777655577776664

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=98.05  E-value=1.7e-06  Score=79.92  Aligned_cols=97  Identities=13%  Similarity=0.024  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCC--------------------------------------
Q 044572          282 TRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARK--------------------------------------  321 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~--------------------------------------  321 (457)
                      ...++.++..+..+..  .+..++|.+||||+|.+.+|....                                      
T Consensus        32 ~~Laa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~  111 (249)
T d1o9ga_          32 VRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELER  111 (249)
T ss_dssp             HHHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccc
Confidence            3445555555554332  345699999999999999987421                                      


Q ss_pred             --CCEEEEEeCCHHHHHHHH---HHHhhCCCCCCCcEEEEEccCCcCccc--c--cCCccEEEECCCC
Q 044572          322 --CRSVKCVEINKESQLSFE---KTVSRLPKSVDGNISWHNADNSIEPLS--W--LVGSDVLVVDPPR  380 (457)
Q Consensus       322 --~~~V~gVE~~~~av~~A~---~Na~~~~~~~~~nv~~~~~d~~~~~~~--~--~~~~D~vi~DPPR  380 (457)
                        ...++|.|+++++++.|+   +|++..  ++.+.+++.+.|+++....  .  ...+++||.|||+
T Consensus       112 ~~~~~i~G~D~d~~ai~~A~~~r~n~~~A--gl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPY  177 (249)
T d1o9ga_         112 REQSERFGKPSYLEAAQAARRLRERLTAE--GGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPY  177 (249)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHHHHT--TSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCG
T ss_pred             cccCCccccccCHHHHHHHHHHHHHHHHc--CCCceeeeeecchhccCcchhccCCCCCCEEEeCCCc
Confidence              014679999999999984   688774  4456799999999864321  1  2457899999995

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.2e-06  Score=80.82  Aligned_cols=46  Identities=13%  Similarity=0.270  Sum_probs=40.9

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      ++.+|||+|||+|.+++.++.. ++.+|+|+|+|+.+++.|+++++.
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~~~~~   96 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKK   96 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCHhHHHHhcc-ccCcEEEecCCHHHHHHHHHHHhh
Confidence            5789999999999999888764 467899999999999999999875

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.03  E-value=7.4e-06  Score=73.53  Aligned_cols=84  Identities=17%  Similarity=0.072  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572          282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAA-RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN  360 (457)
Q Consensus       282 ~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~-~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~  360 (457)
                      ...++.|++.+.  ..++++|||.+||+|.|.+.+... .....++|+|+++.+++.+            .+..++++|.
T Consensus         5 ~~i~~~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~------------~~~~~~~~~~   70 (223)
T d2ih2a1           5 PEVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEGILADF   70 (223)
T ss_dssp             HHHHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEEEESCG
T ss_pred             HHHHHHHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc------------ccceeeeeeh
Confidence            344555554322  236889999999999998887653 3356799999998764322            2346778876


Q ss_pred             CcCcccccCCccEEEECCCCC
Q 044572          361 SIEPLSWLVGSDVLVVDPPRK  381 (457)
Q Consensus       361 ~~~~~~~~~~~D~vi~DPPR~  381 (457)
                      ....  ....||+|+.|||..
T Consensus        71 ~~~~--~~~~fd~ii~npP~~   89 (223)
T d2ih2a1          71 LLWE--PGEAFDLILGNPPYG   89 (223)
T ss_dssp             GGCC--CSSCEEEEEECCCCC
T ss_pred             hccc--cccccceecccCccc
Confidence            5533  236799999999963

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.98  E-value=1.1e-05  Score=76.84  Aligned_cols=109  Identities=16%  Similarity=0.061  Sum_probs=80.4

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC-CCCCcEEEEEccCCcCcccccCCccEE
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK-SVDGNISWHNADNSIEPLSWLVGSDVL  374 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~-~~~~nv~~~~~d~~~~~~~~~~~~D~v  374 (457)
                      .+..++||-+|.|.|.+.-.+.+.....+|+.||++++.++.|++-...+.. ....+++++.+|+.+++.....+||+|
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI  183 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI  183 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence            3456889999999999999999765567999999999999999987543211 124689999999988876655789999


Q ss_pred             EECCCCC-C-----ccHHHHHHHHhcCCCCcEEEEe
Q 044572          375 VVDPPRK-G-----LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       375 i~DPPR~-G-----l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |+|.+.. |     ...+..+.+.+.-.+++++.+-
T Consensus       184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q  219 (312)
T d2b2ca1         184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ  219 (312)
T ss_dssp             EECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred             EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence            9998742 1     2345677776654577777764

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=97.94  E-value=2e-05  Score=74.57  Aligned_cols=70  Identities=21%  Similarity=0.256  Sum_probs=57.5

Q ss_pred             eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCC
Q 044572          301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPR  380 (457)
Q Consensus       301 ~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR  380 (457)
                      +|||||||.|.+++-+-. +|.+.|.++|+++.|++..+.|..         -..+.+|+.+.........|+++.-||-
T Consensus         2 k~~~lF~G~Gg~~~gl~~-aG~~~~~a~e~d~~a~~~~~~N~~---------~~~~~~Di~~~~~~~~~~~dll~~g~PC   71 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQK-AGFRIICANEYDKSIWKTYESNHS---------AKLIKGDISKISSDEFPKCDGIIGGPPC   71 (324)
T ss_dssp             EEEEESCSSCHHHHHHHH-HTCEEEEEEECCHHHHHHHHHHCC---------SEEEESCTTTSCGGGSCCCSEEEECCCC
T ss_pred             eEEEeCcCcCHHHHHHHH-CCCEEEEEEeCCHHHHHHHHHHCC---------CCCccCChhhCCHhHcccccEEeecccc
Confidence            699999999999988775 467888899999999998888742         1567899988755445679999999993

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.1e-05  Score=76.06  Aligned_cols=108  Identities=15%  Similarity=0.103  Sum_probs=79.7

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCC-CCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP-KSVDGNISWHNADNSIEPLSWLVGSDVLV  375 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~-~~~~~nv~~~~~d~~~~~~~~~~~~D~vi  375 (457)
                      +.-++||-+|.|.|.++-.+.+..+..+|+.||++++.++.|++-...+. .....+++++.+|+..++....++||+||
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            45688999999999999999976567899999999999999987543210 01246899999999888766557899999


Q ss_pred             ECCCCC-C-----ccHHHHHHHHhcCCCCcEEEEe
Q 044572          376 VDPPRK-G-----LDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       376 ~DPPR~-G-----l~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|.+.. +     .+.+..+.+.+.-.+++++.+-
T Consensus       157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred             EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence            998632 1     2335677776654577776664

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.90  E-value=1.4e-05  Score=79.55  Aligned_cols=100  Identities=13%  Similarity=0.050  Sum_probs=70.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-------------CCEEEEEeCCHHHHHHHHHH
Q 044572          275 SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-------------CRSVKCVEINKESQLSFEKT  341 (457)
Q Consensus       275 ~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-------------~~~V~gVE~~~~av~~A~~N  341 (457)
                      +.||.. +..++.|++.+..  ..+.+|+|.+||+|.|-+.+..+..             ...++|+|+++.++..|+.|
T Consensus       142 G~f~TP-~~Iv~~mv~ll~~--~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n  218 (425)
T d2okca1         142 GQYFTP-RPLIQAMVDCINP--QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMN  218 (425)
T ss_dssp             GGGCCC-HHHHHHHHHHHCC--CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred             hhhccc-hhhhHhhheeccC--cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhh
Confidence            456653 5666666554322  3578999999999999988876421             02499999999999999999


Q ss_pred             HhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCC
Q 044572          342 VSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPR  380 (457)
Q Consensus       342 a~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR  380 (457)
                      .-..+. ...+..+..+|.....  ....||+||.|||.
T Consensus       219 ~~l~g~-~~~~~~i~~~d~l~~~--~~~~fD~Ii~NPPf  254 (425)
T d2okca1         219 LYLHGI-GTDRSPIVCEDSLEKE--PSTLVDVILANPPF  254 (425)
T ss_dssp             HHHTTC-CSSCCSEEECCTTTSC--CSSCEEEEEECCCS
T ss_pred             hhhcCC-ccccceeecCchhhhh--cccccceEEecCCC
Confidence            876431 2234556777765432  23579999999996

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.80  E-value=4.6e-05  Score=71.91  Aligned_cols=131  Identities=13%  Similarity=0.054  Sum_probs=91.3

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCC-CCCCCcEEEEEccCCcCccccc-CCccEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP-KSVDGNISWHNADNSIEPLSWL-VGSDVL  374 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~-~~~~~nv~~~~~d~~~~~~~~~-~~~D~v  374 (457)
                      +.-++||=+|.|.|.+...+.+..+..+|+.||++++.++.+++-...+. .....+++.+.+|+.+++.+.. ++||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            45679999999999999999986666799999999999999987542210 0124689999999988775543 479999


Q ss_pred             EECCCCC-C-----ccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhcc
Q 044572          375 VVDPPRK-G-----LDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASV  428 (457)
Q Consensus       375 i~DPPR~-G-----l~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~  428 (457)
                      |+|.+.. |     .+.+..+.+.+.-.+++++.+-+.+..-. ....+.+...+++.-.
T Consensus       159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~-~~~~~~i~~~l~~vF~  217 (290)
T d1xj5a_         159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLH-MDIIEDIVSNCREIFK  217 (290)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTC-HHHHHHHHHHHHHHCS
T ss_pred             EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHH-HHHHHHHHhhhhhhcc
Confidence            9999853 2     23467777776555777777753322211 2233455555555543

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=97.69  E-value=6.4e-05  Score=71.44  Aligned_cols=71  Identities=24%  Similarity=0.255  Sum_probs=57.5

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD  377 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D  377 (457)
                      .+-+|||||||.|++++.|-. .|..-|.++|+++.|++..+.|...          ..++|+.+........+|+++.-
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~-aG~~~v~a~e~d~~a~~~~~~N~~~----------~~~~Di~~~~~~~~~~~Dll~gg   78 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALES-CGAECVYSNEWDKYAQEVYEMNFGE----------KPEGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHH-TTCEEEEEECCCHHHHHHHHHHHSC----------CCBSCGGGSCGGGSCCCSEEEEE
T ss_pred             CCCeEEEECccccHHHHHHHH-CCCeEEEEEeCCHHHHHHHHHHCCC----------CCcCchhcCchhhcceeeeeecc
Confidence            467999999999999998875 6788889999999999999988632          12477776554445679999999


Q ss_pred             CC
Q 044572          378 PP  379 (457)
Q Consensus       378 PP  379 (457)
                      ||
T Consensus        79 pP   80 (327)
T d2c7pa1          79 FP   80 (327)
T ss_dssp             CC
T ss_pred             cc
Confidence            99

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=4.3e-05  Score=70.90  Aligned_cols=46  Identities=13%  Similarity=0.216  Sum_probs=39.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR  344 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~  344 (457)
                      +|.+|||+|||+|.+++..+.. .+.+|+|+|.|+.|++.|+++++.
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~-~~~~v~~~D~S~~~i~~~~~~~~~   99 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQE   99 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTT
T ss_pred             CCcEEEEeccCCCHHHHHHhcc-cCCeEEEEeCCHHHHHHHHHHHhc
Confidence            6889999999999998766643 357999999999999999988764

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=6.9e-05  Score=76.52  Aligned_cols=126  Identities=13%  Similarity=0.094  Sum_probs=78.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC------------------CCEEEEEeCCHHHH
Q 044572          274 PSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK------------------CRSVKCVEINKESQ  335 (457)
Q Consensus       274 ~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~------------------~~~V~gVE~~~~av  335 (457)
                      .+-||.. +...+.|++.+..  ..+.+|+|.+||+|.|-+.+.....                  ...++|+|+++.++
T Consensus       143 ~GqfyTP-~~Iv~~mv~ll~~--~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~  219 (524)
T d2ar0a1         143 AGQYFTP-RPLIKTIIHLLKP--QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR  219 (524)
T ss_dssp             --CCCCC-HHHHHHHHHHHCC--CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred             cchhccc-cchhHhhhhcccC--ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHH
Confidence            3567764 5566555554322  3578999999999999887765311                  02589999999999


Q ss_pred             HHHHHHHhhCCCCCCCc----EEEEEccCCcCcccccCCccEEEECCCCCCcc--------------H---HHHHHHHhc
Q 044572          336 LSFEKTVSRLPKSVDGN----ISWHNADNSIEPLSWLVGSDVLVVDPPRKGLD--------------S---SLVHALQSI  394 (457)
Q Consensus       336 ~~A~~Na~~~~~~~~~n----v~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~--------------~---~v~~~l~~~  394 (457)
                      ..|+.|+-..+  ...+    -.+..++..........+||+||.|||...-.              .   =+...+..+
T Consensus       220 ~la~~nl~l~~--~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~L  297 (524)
T d2ar0a1         220 RLALMNCLLHD--IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL  297 (524)
T ss_dssp             HHHHHHHHTTT--CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHE
T ss_pred             HHHHHHHHhhc--ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhc
Confidence            99999986532  1111    12333333221111235799999999974211              1   134455566


Q ss_pred             CCCCcEEEEe
Q 044572          395 GSAERKAKSL  404 (457)
Q Consensus       395 ~~~~~ivyvs  404 (457)
                      ++.+++++|.
T Consensus       298 k~gGr~aiIl  307 (524)
T d2ar0a1         298 HPGGRAAVVV  307 (524)
T ss_dssp             EEEEEEEEEE
T ss_pred             cccCcEEEEE
Confidence            6667778875

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=0.00016  Score=64.56  Aligned_cols=101  Identities=15%  Similarity=0.110  Sum_probs=73.1

Q ss_pred             hhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccE
Q 044572          294 KYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDV  373 (457)
Q Consensus       294 ~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~  373 (457)
                      .++ ++.+++|+|||.|.-|+.+|-...-.+|+.||.+..-+...++-++.++   .+|++++++++++...  ...||+
T Consensus        62 ~~~-~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~---L~nv~v~~~R~E~~~~--~~~fD~  135 (207)
T d1jsxa_          62 PYL-QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK---LENIEPVQSRVEEFPS--EPPFDG  135 (207)
T ss_dssp             GGC-CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---CSSEEEEECCTTTSCC--CSCEEE
T ss_pred             hhh-cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcC---Ccceeeeccchhhhcc--ccccce
Confidence            344 4679999999999999999976555799999999999998888777642   4689999999987543  247999


Q ss_pred             EEECCCCCCccH-HHHHHHHhcCCCCcEEEE
Q 044572          374 LVVDPPRKGLDS-SLVHALQSIGSAERKAKS  403 (457)
Q Consensus       374 vi~DPPR~Gl~~-~v~~~l~~~~~~~~ivyv  403 (457)
                      |+.   |+=..- .+++....+..+++.++.
T Consensus       136 V~s---RA~~~~~~ll~~~~~~l~~~g~~~~  163 (207)
T d1jsxa_         136 VIS---RAFASLNDMVSWCHHLPGEQGRFYA  163 (207)
T ss_dssp             EEC---SCSSSHHHHHHHHTTSEEEEEEEEE
T ss_pred             ehh---hhhcCHHHHHHHHHHhcCCCcEEEE
Confidence            986   653322 355555444333444333

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.55  E-value=6.5e-05  Score=68.51  Aligned_cols=54  Identities=15%  Similarity=0.196  Sum_probs=43.7

Q ss_pred             HHHHHHhhC-CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHh
Q 044572          288 LLRKLQKYV-PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS  343 (457)
Q Consensus       288 l~~~i~~~~-~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~  343 (457)
                      |++.+++.. .+|+.|||.|||+|+.++++....  ++.+|+|++++.++.|++.++
T Consensus       201 L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~--R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         201 LIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLG--RNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEECCCCchHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHc
Confidence            344444433 489999999999999998887653  699999999999999998764

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.48  E-value=7.6e-05  Score=65.47  Aligned_cols=83  Identities=10%  Similarity=-0.007  Sum_probs=62.4

Q ss_pred             HHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc
Q 044572          288 LLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL  365 (457)
Q Consensus       288 l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~  365 (457)
                      |++.+++++  .+|..++|+.+|.|.-+..+....  .+|+|+|.+++|++.|+..       ...++.+++++-.+...
T Consensus         6 ll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~--~~viaiD~D~~ai~~a~~~-------~~~~~~~~~~~f~~~~~   76 (182)
T d1wg8a2           6 LYQEALDLLAVRPGGVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKGL-------HLPGLTVVQGNFRHLKR   76 (182)
T ss_dssp             THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHT-------CCTTEEEEESCGGGHHH
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhccc--CcEEEEhhhhhHHHHHhhc-------cccceeEeehHHHHHHH
Confidence            455666654  478999999999999999998764  4999999999999888752       12578999987654321


Q ss_pred             c---c-cCCccEEEECCC
Q 044572          366 S---W-LVGSDVLVVDPP  379 (457)
Q Consensus       366 ~---~-~~~~D~vi~DPP  379 (457)
                      .   . .+.+|.|++|-.
T Consensus        77 ~l~~~~~~~vdgIl~DLG   94 (182)
T d1wg8a2          77 HLAALGVERVDGILADLG   94 (182)
T ss_dssp             HHHHTTCSCEEEEEEECS
T ss_pred             HHHHcCCCccCEEEEEcc
Confidence            1   1 256999999874

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00017  Score=68.51  Aligned_cols=71  Identities=17%  Similarity=0.289  Sum_probs=53.6

Q ss_pred             CeEEEEcccccHHHHHHHhhCCC--CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc--CCccEEE
Q 044572          300 ASVTDLYAGAGVIGLSLAAARKC--RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL--VGSDVLV  375 (457)
Q Consensus       300 ~~vLDl~cG~G~~sl~lA~~~~~--~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~--~~~D~vi  375 (457)
                      -+|+|||||.|++++.|-. .|.  +-|.++|+++.|++..+.|..        +..++++|+.+......  ...|+++
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~-aG~~~~~~~a~E~~~~a~~~~~~n~~--------~~~~~~~di~~~~~~~~~~~~~Dll~   73 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRE-SCIPAQVVAAIDVNTVANEVYKYNFP--------HTQLLAKTIEGITLEEFDRLSFDMIL   73 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHH-HTCSEEEEEEECCCHHHHHHHHHHCT--------TSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred             CEEEEcCcCccHHHHHHHH-cCCCCeEEEEEECCHHHHHHHHHHCC--------CCCcccCchhhCCHhHcCCCCccEEE
Confidence            4799999999999887754 344  347899999999999888742        23567788876543222  3689999


Q ss_pred             ECCC
Q 044572          376 VDPP  379 (457)
Q Consensus       376 ~DPP  379 (457)
                      .-||
T Consensus        74 ggpP   77 (343)
T d1g55a_          74 MSPP   77 (343)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            9999

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.39  E-value=0.00011  Score=67.80  Aligned_cols=56  Identities=21%  Similarity=0.379  Sum_probs=45.7

Q ss_pred             HHHHHHhh-CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhC
Q 044572          288 LLRKLQKY-VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL  345 (457)
Q Consensus       288 l~~~i~~~-~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~  345 (457)
                      |++.+++. ..+|+.|||.|||+|+.++++....  ++.+|+|++++.++.|++.++..
T Consensus       196 L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lg--R~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         196 VIERLVRALSHPGSTVLDFFAGSGVTARVAIQEG--RNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHT--CEEEEEESSTHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHh
Confidence            34444443 3489999999999999999888763  59999999999999999988753

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.28  E-value=0.00011  Score=68.95  Aligned_cols=55  Identities=16%  Similarity=0.144  Sum_probs=43.4

Q ss_pred             HHHHHHHhh-CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHh
Q 044572          287 ILLRKLQKY-VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS  343 (457)
Q Consensus       287 ~l~~~i~~~-~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~  343 (457)
                      .|++.+++. ..+|+.|||.|||||+.++++...+  ++.+|+|+++++++.|++.+.
T Consensus       238 ~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lg--R~~Ig~El~~~y~~~a~~Rl~  293 (320)
T d1booa_         238 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERES--RKWISFEMKPEYVAASAFRFL  293 (320)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHGGGS
T ss_pred             HHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHHH
Confidence            344444443 3479999999999999998887753  599999999999999987654

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=0.00044  Score=65.95  Aligned_cols=107  Identities=15%  Similarity=0.142  Sum_probs=72.0

Q ss_pred             CCHHHHHHHHHHHH-h-hC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEE
Q 044572          280 ANTRAFDILLRKLQ-K-YV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISW  355 (457)
Q Consensus       280 ~n~~~~~~l~~~i~-~-~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~  355 (457)
                      .|....+.+++.+. + ..  .++..|||+|.|.|.+|..+....++++|++||+++..++..++..+      .+|+++
T Consensus        21 ~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~------~~~~~i   94 (322)
T d1i4wa_          21 WNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE------GSPLQI   94 (322)
T ss_dssp             CCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT------TSSCEE
T ss_pred             CCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc------CCCcEE
Confidence            45666666555441 1 01  14678999999999999999876556799999999999998876532      257899


Q ss_pred             EEccCCcCcc--ccc-------------C---CccEEEECCCCCCccHHHHHHHH
Q 044572          356 HNADNSIEPL--SWL-------------V---GSDVLVVDPPRKGLDSSLVHALQ  392 (457)
Q Consensus       356 ~~~d~~~~~~--~~~-------------~---~~D~vi~DPPR~Gl~~~v~~~l~  392 (457)
                      +.+|+..+..  ...             .   ..=.||.|-|+..-.+-+.+.+.
T Consensus        95 i~~D~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvaNLPy~iss~il~~~l~  149 (322)
T d1i4wa_          95 LKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLS  149 (322)
T ss_dssp             ECSCTTCHHHHHHHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHH
T ss_pred             EeCchhhcchhhhhhhcccccccccccccccCCceEEEEeCCchhhHHHHHHHHH
Confidence            9999875311  000             0   01158899998765554444444

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.96  E-value=0.0038  Score=54.56  Aligned_cols=66  Identities=21%  Similarity=0.156  Sum_probs=44.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccH----HHHHHHhhCC----CCEEEEEeCCHHHHHHHHHH
Q 044572          274 PSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGV----IGLSLAAARK----CRSVKCVEINKESQLSFEKT  341 (457)
Q Consensus       274 ~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~----~sl~lA~~~~----~~~V~gVE~~~~av~~A~~N  341 (457)
                      .+.||.. +.+.+.|.+.+... ...-+||++|||+|-    +++.+.....    --+|+|.|+|+.+++.|++.
T Consensus         2 ~T~FFRd-~~~f~~L~~~~~~~-~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g   75 (193)
T d1af7a2           2 LTAFFRE-AHHFPILAEHARRR-HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSG   75 (193)
T ss_dssp             CCCTTTT-TTHHHHHHHHHHHS-CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHT
T ss_pred             CCCCcCC-cHHHHHHHHHHhcc-CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcC
Confidence            3678874 55667666665542 234489999999996    4444443211    12699999999999999853

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=96.65  E-value=0.0017  Score=58.89  Aligned_cols=100  Identities=15%  Similarity=0.032  Sum_probs=70.4

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--cccCCccEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSDVLV  375 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~~~~~D~vi  375 (457)
                      .+.+++|+|+|.|.=|+.+|-.....+|+.||.+..=+...+.=++.++   .+|+.++++.+++...  .....||+|+
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~---L~n~~i~~~R~E~~~~~~~~~~~~D~v~  146 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ---LENTTFCHDRAETFGQRKDVRESYDIVT  146 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT---CSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhC---CCCcEEEeehhhhccccccccccceEEE
Confidence            4678999999999999999976566799999999998888776666542   3689999998876432  2235799999


Q ss_pred             ECCCCCCccH-HHHHHHHhcCCC-CcEEEE
Q 044572          376 VDPPRKGLDS-SLVHALQSIGSA-ERKAKS  403 (457)
Q Consensus       376 ~DPPR~Gl~~-~v~~~l~~~~~~-~~ivyv  403 (457)
                      .   |+-.+- .+++....+..+ +.+++.
T Consensus       147 s---RAva~l~~ll~~~~~~l~~~g~~i~~  173 (239)
T d1xdza_         147 A---RAVARLSVLSELCLPLVKKNGLFVAL  173 (239)
T ss_dssp             E---ECCSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             E---hhhhCHHHHHHHHhhhcccCCEEEEE
Confidence            7   653322 355555544333 333433

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.07  E-value=0.025  Score=51.03  Aligned_cols=65  Identities=9%  Similarity=-0.030  Sum_probs=49.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      ...+|||+|||+|.+++.++++..--+++..|. ++.++       ..  ...++++++.+|.++..    ...|++++
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~--~~~~ri~~~~gd~~~~~----p~~D~~~l  145 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NA--PPLSGIEHVGGDMFASV----PQGDAMIL  145 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TC--CCCTTEEEEECCTTTCC----CCEEEEEE
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------cc--CCCCCeEEecCCccccc----ccceEEEE
Confidence            457899999999999999998776678999998 44432       21  23478999999987643    34588877

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.03  E-value=0.007  Score=54.89  Aligned_cols=65  Identities=12%  Similarity=0.102  Sum_probs=50.3

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV  376 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~  376 (457)
                      ...+|||+|||+|.+++.++++....+++..|. ++.++.+         ...++++++.+|.++..    ..+|++++
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~---------~~~~rv~~~~gD~f~~~----p~aD~~~l  144 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL---------SGSNNLTYVGGDMFTSI----PNADAVLL  144 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC---------CCBTTEEEEECCTTTCC----CCCSEEEE
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC---------cccCceEEEecCcccCC----CCCcEEEE
Confidence            457899999999999999998766678999998 4444321         23478999999987642    35798887

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.016  Score=49.90  Aligned_cols=80  Identities=15%  Similarity=0.003  Sum_probs=56.6

Q ss_pred             HHHHHHHHh--hCCCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572          286 DILLRKLQK--YVPYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI  362 (457)
Q Consensus       286 ~~l~~~i~~--~~~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~  362 (457)
                      -+|++.-.+  ++.++.+||||||+-|.++..++... ....|+++|+.+-              ....++.++++|..+
T Consensus         8 fKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~--------------~~i~~~~~~~~d~~~   73 (180)
T d1ej0a_           8 FKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM--------------DPIVGVDFLQGDFRD   73 (180)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC--------------CCCTTEEEEESCTTS
T ss_pred             HHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc--------------cccCCceEeeccccc
Confidence            355444333  35688999999999999999888653 3468999997541              224678999999876


Q ss_pred             Cccc------c-cCCccEEEECCC
Q 044572          363 EPLS------W-LVGSDVLVVDPP  379 (457)
Q Consensus       363 ~~~~------~-~~~~D~vi~DPP  379 (457)
                      ....      . ...+|+|+.|=-
T Consensus        74 ~~~~~~~~~~~~~~~~DlVlSD~a   97 (180)
T d1ej0a_          74 ELVMKALLERVGDSKVQVVMSDMA   97 (180)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             chhhhhhhhhccCcceeEEEeccc
Confidence            3211      1 246999999953

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.17  E-value=0.31  Score=40.35  Aligned_cols=97  Identities=14%  Similarity=0.071  Sum_probs=61.0

Q ss_pred             CCCCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc-------c-
Q 044572          296 VPYGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL-------S-  366 (457)
Q Consensus       296 ~~~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~-------~-  366 (457)
                      +++|++||=+||| .|.+++.+|+..|+ +|+++|.+++-++.|++-    +    ....+..-+..+...       . 
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~----g----a~~~~~~~~~~~~~~~~~~~~~~~   94 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC----G----ADVTLVVDPAKEEESSIIERIRSA   94 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT----T----CSEEEECCTTTSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc----C----CcEEEeccccccccchhhhhhhcc
Confidence            3578999988876 67777888887775 899999999999888752    1    112222211111110       1 


Q ss_pred             ccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          367 WLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       367 ~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ....+|+||---   |-...+-.++..+++.++++.+.
T Consensus        95 ~g~g~D~vid~~---g~~~~~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2          95 IGDLPNVTIDCS---GNEKCITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             SSSCCSEEEECS---CCHHHHHHHHHHSCTTCEEEECS
T ss_pred             cccCCceeeecC---CChHHHHHHHHHHhcCCceEEEe
Confidence            124589887543   33333555666777778888875

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.31  E-value=0.067  Score=46.27  Aligned_cols=45  Identities=20%  Similarity=0.111  Sum_probs=38.5

Q ss_pred             CCCCCeEEEEcccc-cHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572          296 VPYGASVTDLYAGA-GVIGLSLAAARKCRSVKCVEINKESQLSFEK  340 (457)
Q Consensus       296 ~~~~~~vLDl~cG~-G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~  340 (457)
                      +++|++||-+|||. |.+++.+|+..++.+|+++|.+++-++.|++
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~   68 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA   68 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh
Confidence            45899999999976 6677888877788999999999999988875

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=93.06  E-value=0.11  Score=46.20  Aligned_cols=107  Identities=9%  Similarity=-0.074  Sum_probs=64.4

Q ss_pred             HHHHHHHhhCCCCCeEEEEcccccHHHHHHHhh----CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572          287 ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAA----RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI  362 (457)
Q Consensus       287 ~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~----~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~  362 (457)
                      .+++.++..+ +-++||++|++.|.-++.+|..    ..-.+|++||+++.....+.        ...++++++.+|..+
T Consensus        70 ~~~~eli~~~-KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~--------~~~~~I~~i~gDs~~  140 (232)
T d2bm8a1          70 AVYHDMLWEL-RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA--------SDMENITLHQGDCSD  140 (232)
T ss_dssp             HHHHHHHHHH-CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG--------GGCTTEEEEECCSSC
T ss_pred             HHHHHHHHHh-CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh--------ccccceeeeeccccc
Confidence            3445444434 3578999999999877666532    12359999999875432211        123689999999765


Q ss_pred             C--ccccc-CCccEEEECCCCCCccHHHHHH--HHhcCCCCcEEEEe
Q 044572          363 E--PLSWL-VGSDVLVVDPPRKGLDSSLVHA--LQSIGSAERKAKSL  404 (457)
Q Consensus       363 ~--~~~~~-~~~D~vi~DPPR~Gl~~~v~~~--l~~~~~~~~ivyvs  404 (457)
                      .  +.... ..+|+||+|=--.-  ..++..  +..+..+++++.+.
T Consensus       141 ~~~~~~l~~~~~dlIfID~~H~~--~~v~~~~~~~~lLk~GG~iIve  185 (232)
T d2bm8a1         141 LTTFEHLREMAHPLIFIDNAHAN--TFNIMKWAVDHLLEEGDYFIIE  185 (232)
T ss_dssp             SGGGGGGSSSCSSEEEEESSCSS--HHHHHHHHHHHTCCTTCEEEEC
T ss_pred             HHHHHHHHhcCCCEEEEcCCcch--HHHHHHHHHhcccCcCCEEEEE
Confidence            3  22221 35899999964321  222222  22334577777774

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=92.67  E-value=0.1  Score=46.60  Aligned_cols=56  Identities=9%  Similarity=-0.013  Sum_probs=43.6

Q ss_pred             CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572          298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE  363 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~  363 (457)
                      ...+|||+|||+|.+++.+++....-+++.+|.-+. ++       ..  ....+++++.+|.++.
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~-------~~--~~~~r~~~~~~d~~~~  136 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE-------DA--PSYPGVEHVGGDMFVS  136 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT-------TC--CCCTTEEEEECCTTTC
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh-------hc--ccCCceEEeccccccc
Confidence            357899999999999999999876679999998543 21       11  2346899999998764

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=92.56  E-value=0.1  Score=47.47  Aligned_cols=113  Identities=11%  Similarity=0.112  Sum_probs=75.1

Q ss_pred             EEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc---CCccEEEECCC
Q 044572          303 TDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPP  379 (457)
Q Consensus       303 LDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~---~~~D~vi~DPP  379 (457)
                      +..|.||-.++..+.+.  ..+.+..|..++-.+..++|..     ...++.+++.|.++.+....   .+--+|++|||
T Consensus        87 l~~YPGSP~ia~~llR~--~Drl~l~ELHp~e~~~L~~~~~-----~~~~~~v~~~DG~~~l~allPP~~rRgLVLIDPp  159 (271)
T d2oo3a1          87 LSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPH-----FNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS  159 (271)
T ss_dssp             CCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCC-----TTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred             cCcCCCCHHHHHHhCCC--CCceEEeecCHHHHHHHHHHhc-----cCCCceEEcCchHHHHHhhCCCCCCceEEEecCC
Confidence            57899999999888854  5699999999999888876643     24689999999887654433   23469999999


Q ss_pred             CCCccH--HH----HHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhc
Q 044572          380 RKGLDS--SL----VHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEAS  427 (457)
Q Consensus       380 R~Gl~~--~v----~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~  427 (457)
                      +.--++  .+    .+++.+....--+|+-=     +......+.|...+++..
T Consensus       160 YE~k~ey~~v~~~l~~a~kr~~~g~~~iWYP-----i~~~~~~~~~~~~l~~~~  208 (271)
T d2oo3a1         160 YERKEEYKEIPYAIKNAYSKFSTGLYCVWYP-----VVNKAWTEQFLRKMREIS  208 (271)
T ss_dssp             CCSTTHHHHHHHHHHHHHHHCTTSEEEEEEE-----ESSHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHHHhCCCceEEEEee-----ccCcHHHHHHHHHHHhcC
Confidence            754322  23    33444443222334433     333445566776666655

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.54  E-value=0.12  Score=43.75  Aligned_cols=96  Identities=15%  Similarity=0.085  Sum_probs=59.7

Q ss_pred             CCCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc---C---cccc--
Q 044572          297 PYGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI---E---PLSW--  367 (457)
Q Consensus       297 ~~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~---~---~~~~--  367 (457)
                      ++|++||-.||| +|.+++.+|+..|+++|+++|.+++-++.|++.    +   .+  .++...-.+   .   ..+.  
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----G---a~--~vi~~~~~~~~~~~~~i~~~~~   97 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----G---AD--LTLNRRETSVEERRKAIMDITH   97 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----T---CS--EEEETTTSCHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccccccccc----c---ce--EEEeccccchHHHHHHHHHhhC
Confidence            478999988876 477888888888888999999999999888642    1   11  223221111   1   1111  


Q ss_pred             cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          368 LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       368 ~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ...+|+||--   .|-...+..++..+++.++++.+.
T Consensus        98 ~~g~Dvvid~---vG~~~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2          98 GRGADFILEA---TGDSRALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             TSCEEEEEEC---SSCTTHHHHHHHHEEEEEEEEECC
T ss_pred             CCCceEEeec---CCchhHHHHHHHHhcCCCEEEEEe
Confidence            1358987742   233333455566666566766663

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.09  E-value=0.4  Score=39.78  Aligned_cols=97  Identities=14%  Similarity=0.074  Sum_probs=60.0

Q ss_pred             CCCCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc---c----cc
Q 044572          296 VPYGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP---L----SW  367 (457)
Q Consensus       296 ~~~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~---~----~~  367 (457)
                      +.+|++||=+||| .|.+++.+|+..|+.+|+++|.+++-++.|++.    +   .+  .++..+-.+..   .    ..
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----G---a~--~~~~~~~~~~~~~~~~~~~~~   94 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----G---AD--LVLQISKESPQEIARKVEGQL   94 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T---CS--EEEECSSCCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----C---Cc--ccccccccccccccccccccC
Confidence            3478898888874 455677777777888999999999999888742    1   12  22222222110   0    01


Q ss_pred             cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          368 LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       368 ~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      ...+|+||--   .|-...+-.++..+++.++++++.
T Consensus        95 g~g~Dvvid~---~G~~~~~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2          95 GCKPEVTIEC---TGAEASIQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             TSCCSEEEEC---SCCHHHHHHHHHHSCTTCEEEECS
T ss_pred             CCCceEEEec---cCCchhHHHHHHHhcCCCEEEEEe
Confidence            2368987752   343333445566677677777775

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=90.67  E-value=0.25  Score=47.35  Aligned_cols=61  Identities=16%  Similarity=0.177  Sum_probs=46.1

Q ss_pred             CCCCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCC-CCCcEEEEE
Q 044572          297 PYGASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKS-VDGNISWHN  357 (457)
Q Consensus       297 ~~~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~-~~~nv~~~~  357 (457)
                      .+++.++|+||-.|.+++.++...  ...+|+++|-++...+..++|++.+.+. ...++..+.
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~  274 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG  274 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEE
Confidence            367899999999999988776532  2468999999999999999999875321 123455544

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.40  E-value=0.11  Score=43.46  Aligned_cols=44  Identities=16%  Similarity=0.123  Sum_probs=36.8

Q ss_pred             CCCCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572          296 VPYGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEK  340 (457)
Q Consensus       296 ~~~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~  340 (457)
                      +.+|++||-+|+| .|.+++.+|+..|+ +|+++|.+++-++.|++
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~   69 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK   69 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhc
Confidence            4579999999887 77888888877776 79999999998888875

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.25  E-value=0.14  Score=43.20  Aligned_cols=97  Identities=11%  Similarity=-0.032  Sum_probs=60.5

Q ss_pred             CCCCCeEEEEcc-cccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE-ccCCcCcc---c--cc
Q 044572          296 VPYGASVTDLYA-GAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN-ADNSIEPL---S--WL  368 (457)
Q Consensus       296 ~~~~~~vLDl~c-G~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~-~d~~~~~~---~--~~  368 (457)
                      +++|++|+=.|| |.|.+++.+++..++++|+++|.+++-++.|++-    +   .+  .++. .|......   .  ..
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~----G---A~--~~in~~~~~~~~~~~~~~~~g   97 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV----G---AT--ECISPKDSTKPISEVLSEMTG   97 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH----T---CS--EEECGGGCSSCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc----C---Cc--EEECccccchHHHHHHHHhcc
Confidence            457898888877 4566777788878889999999999999988863    1   11  2222 12111111   1  12


Q ss_pred             CCccEEEECCCCCCccHHHHHHHHhcCCC-CcEEEEe
Q 044572          369 VGSDVLVVDPPRKGLDSSLVHALQSIGSA-ERKAKSL  404 (457)
Q Consensus       369 ~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~-~~ivyvs  404 (457)
                      ..+|++|..-.   -.....+++..+... ++++.+.
T Consensus        98 ~G~d~vi~~~g---~~~~~~~a~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2          98 NNVGYTFEVIG---HLETMIDALASCHMNYGTSVVVG  131 (176)
T ss_dssp             SCCCEEEECSC---CHHHHHHHHTTSCTTTCEEEECS
T ss_pred             ccceEEEEeCC---chHHHHHHHHHhhcCCeEEEEEE
Confidence            46898887533   233455555555444 6777764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=88.71  E-value=0.27  Score=41.29  Aligned_cols=97  Identities=16%  Similarity=0.133  Sum_probs=60.0

Q ss_pred             CCCCCeEEEEcccc-cHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC---ccccc--C
Q 044572          296 VPYGASVTDLYAGA-GVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE---PLSWL--V  369 (457)
Q Consensus       296 ~~~~~~vLDl~cG~-G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~---~~~~~--~  369 (457)
                      +++|++||=+|||. |.+++.+|+..|+++|+++|.+++-++.|++-      + .+  +++.-+-.+.   +.+..  .
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l------G-a~--~~i~~~~~~~~~~v~~~t~g~   95 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY------G-AT--DILNYKNGHIEDQVMKLTNGK   95 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH------T-CS--EEECGGGSCHHHHHHHHTTTS
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh------C-cc--ccccccchhHHHHHHHHhhcc
Confidence            35788888788864 78888888888888999999999988888642      1 11  2332222221   11111  3


Q ss_pred             CccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          370 GSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       370 ~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      .+|+||---..   ...+-+.+..+++.++++.+.
T Consensus        96 G~D~vid~~g~---~~~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          96 GVDRVIMAGGG---SETLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             CEEEEEECSSC---TTHHHHHHHHEEEEEEEEECC
T ss_pred             CcceEEEccCC---HHHHHHHHHHHhcCCEEEEEe
Confidence            48987754332   223444566666566666664

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.81  E-value=1  Score=35.29  Aligned_cols=87  Identities=8%  Similarity=0.060  Sum_probs=57.3

Q ss_pred             cccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC--cccc-cCCccEEEECCCCCC
Q 044572          306 YAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSW-LVGSDVLVVDPPRKG  382 (457)
Q Consensus       306 ~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~--~~~~-~~~~D~vi~DPPR~G  382 (457)
                      =||.|.+|..+++.-....|+.||.+++.++.++.          ..+.++.||..+.  +.+. ....+.+++-.+...
T Consensus         5 I~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~   74 (129)
T d2fy8a1           5 ICGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----------SGANFVHGDPTRVSDLEKANVRGARAVIVNLESDS   74 (129)
T ss_dssp             EESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----------TTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHH
T ss_pred             EECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----------cCccccccccCCHHHHHHhhhhcCcEEEEeccchh
Confidence            47899999999986555679999999998765532          1358899998763  1111 256788888777533


Q ss_pred             ccHHHHHHHHhcCCCCcEEEE
Q 044572          383 LDSSLVHALQSIGSAERKAKS  403 (457)
Q Consensus       383 l~~~v~~~l~~~~~~~~ivyv  403 (457)
                      ..-.+...++.+. +..-+++
T Consensus        75 ~n~~~~~~~r~~~-~~~~iia   94 (129)
T d2fy8a1          75 ETIHCILGIRKID-ESVRIIA   94 (129)
T ss_dssp             HHHHHHHHHHHHC-SSSCEEE
T ss_pred             hhHHHHHHHHHHC-CCceEEE
Confidence            2223455556665 4433443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.77  E-value=0.82  Score=37.93  Aligned_cols=97  Identities=15%  Similarity=0.063  Sum_probs=58.9

Q ss_pred             CCCCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc---cc-cCC
Q 044572          296 VPYGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL---SW-LVG  370 (457)
Q Consensus       296 ~~~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~---~~-~~~  370 (457)
                      +++|++||=+||| .|.+++.+|+..+++.|+.+|.+++-++.|++-    +   .+  +++..+..+...   +. .+.
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----G---a~--~~i~~~~~~~~~~i~~~t~gg   96 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----G---AT--HVINSKTQDPVAAIKEITDGG   96 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----T---CS--EEEETTTSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----C---Ce--EEEeCCCcCHHHHHHHHcCCC
Confidence            3478888877774 344666667667788999999999988888752    1   12  344443333222   11 246


Q ss_pred             ccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          371 SDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       371 ~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|+||-.-   |-...+...+..+++.++++.+.
T Consensus        97 ~D~vid~~---G~~~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          97 VNFALEST---GSPEILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             EEEEEECS---CCHHHHHHHHHTEEEEEEEEECC
T ss_pred             CcEEEEcC---CcHHHHHHHHhcccCceEEEEEe
Confidence            89887643   32333344455566566777664

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=87.75  E-value=0.31  Score=40.95  Aligned_cols=97  Identities=14%  Similarity=0.040  Sum_probs=62.8

Q ss_pred             CCCCCeEEEEcccc-cHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc-Cccc-----cc
Q 044572          296 VPYGASVTDLYAGA-GVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI-EPLS-----WL  368 (457)
Q Consensus       296 ~~~~~~vLDl~cG~-G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~-~~~~-----~~  368 (457)
                      +++|++||=+|||. |.+++.+|+..|++.|+++|.+++-++.|++    ++   .+  .++...-.+ ....     ..
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~G---a~--~~i~~~~~~~~~~~~~~~~~~   96 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LG---AT--DCLNPRELDKPVQDVITELTA   96 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TT---CS--EEECGGGCSSCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hC---CC--cccCCccchhhhhhhHhhhhc
Confidence            35789998888865 8888888988889999999999998877765    22   12  223221111 1111     12


Q ss_pred             CCccEEEECCCCCCccHHHHHHHHhcCCC-CcEEEEe
Q 044572          369 VGSDVLVVDPPRKGLDSSLVHALQSIGSA-ERKAKSL  404 (457)
Q Consensus       369 ~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~-~~ivyvs  404 (457)
                      ..+|+||-   -.|....+.+++..+++. ++++.+.
T Consensus        97 ~G~d~vie---~~G~~~~~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2          97 GGVDYSLD---CAGTAQTLKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             SCBSEEEE---SSCCHHHHHHHHHTBCTTTCEEEECC
T ss_pred             CCCcEEEE---ecccchHHHHHHHHhhcCCeEEEecC
Confidence            46898875   345444455666666654 6777774

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=87.42  E-value=0.34  Score=40.64  Aligned_cols=97  Identities=18%  Similarity=0.041  Sum_probs=60.2

Q ss_pred             CCCCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc-Cccc----c-c
Q 044572          296 VPYGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI-EPLS----W-L  368 (457)
Q Consensus       296 ~~~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~-~~~~----~-~  368 (457)
                      +.+|++||=+||| .|.+++.+|+..++++|+++|++++-++.|++    ++   .+  .++...-.+ ....    . .
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~----lG---a~--~~i~~~~~d~~~~~~~~~~~~   95 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LG---AT--ECLNPKDYDKPIYEVICEKTN   95 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TT---CS--EEECGGGCSSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH----cC---Cc--EEEcCCCchhHHHHHHHHhcC
Confidence            4579999988874 45567777777788899999999999988875    22   11  333222112 1111    1 1


Q ss_pred             CCccEEEECCCCCCccHHHHHHHHhcCCC-CcEEEEe
Q 044572          369 VGSDVLVVDPPRKGLDSSLVHALQSIGSA-ERKAKSL  404 (457)
Q Consensus       369 ~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~-~~ivyvs  404 (457)
                      ..+|+||..   .|....+.+.+..+..+ +.++.+.
T Consensus        96 ~G~d~vid~---~g~~~~~~~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2          96 GGVDYAVEC---AGRIETMMNALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             SCBSEEEEC---SCCHHHHHHHHHTBCTTTCEEEECC
T ss_pred             CCCcEEEEc---CCCchHHHHHHHHHHHhcCceEEEE
Confidence            468988874   34444455666666554 5566664

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.86  E-value=0.2  Score=41.44  Aligned_cols=96  Identities=18%  Similarity=0.043  Sum_probs=57.3

Q ss_pred             CCCCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc---cccCCc
Q 044572          296 VPYGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL---SWLVGS  371 (457)
Q Consensus       296 ~~~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~---~~~~~~  371 (457)
                      +.+|++||=+|+| .|.+++.+|+..| .+|+++|.+++-++.+++    ++   .+  .++..+-.+...   .....+
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~----~G---a~--~~i~~~~~~~~~~~~~~~~g~   94 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARK----LG---AS--LTVNARQEDPVEAIQRDIGGA   94 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHH----TT---CS--EEEETTTSCHHHHHHHHHSSE
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhc----cC---cc--ccccccchhHHHHHHHhhcCC
Confidence            4578888877763 4566777777766 589999999999888764    22   12  334333222211   112346


Q ss_pred             cEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          372 DVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       372 D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |.+|.+-.   -...+...+..+++.++++.+.
T Consensus        95 ~~~i~~~~---~~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          95 HGVLVTAV---SNSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             EEEEECCS---CHHHHHHHHTTEEEEEEEEECC
T ss_pred             cccccccc---cchHHHHHHHHhcCCcEEEEEE
Confidence            66666543   2344555555566566666664

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=86.12  E-value=0.23  Score=44.41  Aligned_cols=35  Identities=26%  Similarity=0.246  Sum_probs=28.9

Q ss_pred             CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeC
Q 044572          296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEI  330 (457)
Q Consensus       296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~  330 (457)
                      +.++.+|+|||||-|..+-.+|...+..+|.|+++
T Consensus        64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i   98 (257)
T d2p41a1          64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK   98 (257)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred             ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence            45677999999999999999997644457888887

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.81  E-value=0.29  Score=40.31  Aligned_cols=96  Identities=18%  Similarity=0.030  Sum_probs=55.9

Q ss_pred             CCCCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC---cccccCCc
Q 044572          296 VPYGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE---PLSWLVGS  371 (457)
Q Consensus       296 ~~~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~---~~~~~~~~  371 (457)
                      +.+|++||=.++| .|.+++.+|+..++ +|+++|.+++-++.+++.    +   .+  .++...-.+.   +.......
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~----G---a~--~~~~~~~~~~~~~~~~~~~~~   94 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKEL----G---AD--LVVNPLKEDAAKFMKEKVGGV   94 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----T---CS--EEECTTTSCHHHHHHHHHSSE
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhc----C---cc--eecccccchhhhhcccccCCC
Confidence            4578888877664 45566666766554 899999999998887652    1   11  1221111111   11112456


Q ss_pred             cEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          372 DVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       372 D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      |.+|.|..   -...+-..+..+++.++++.+.
T Consensus        95 ~~~v~~~~---~~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          95 HAAVVTAV---SKPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             EEEEESSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             ceEEeecC---CHHHHHHHHHHhccCCceEecc
Confidence            77778865   2334566666676555555553

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=85.78  E-value=0.34  Score=40.24  Aligned_cols=45  Identities=16%  Similarity=0.158  Sum_probs=37.1

Q ss_pred             CCCCCeEEEEcc-cccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572          296 VPYGASVTDLYA-GAGVIGLSLAAARKCRSVKCVEINKESQLSFEK  340 (457)
Q Consensus       296 ~~~~~~vLDl~c-G~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~  340 (457)
                      +++|++||=.+| |.|.+++.+|+..+++.|+++|.+++-.+.+++
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~   71 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE   71 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH
Confidence            457899887666 667788888888888999999999999888875

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=82.34  E-value=1.4  Score=36.32  Aligned_cols=97  Identities=15%  Similarity=0.042  Sum_probs=57.5

Q ss_pred             CCCCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC--cccc--cCC
Q 044572          296 VPYGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSW--LVG  370 (457)
Q Consensus       296 ~~~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~--~~~~--~~~  370 (457)
                      +.+|++||=.|+| .|.+++.+|+..++..|+++|.+++-++.+++.    +   .+  +++..+-...  ..+.  ...
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----g---a~--~~i~~~~~~~~~~~~~~~~~g  100 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----G---AD--HVVDARRDPVKQVMELTRGRG  100 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----T---CS--EEEETTSCHHHHHHHHTTTCC
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----c---cc--eeecCcccHHHHHHHhhCCCC
Confidence            4578999888874 445566777667788999999999988877742    1   12  3343332111  1111  135


Q ss_pred             ccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572          371 SDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL  404 (457)
Q Consensus       371 ~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs  404 (457)
                      +|+||-.-.   -...+-..+..+++.++++.+.
T Consensus       101 ~d~vid~~g---~~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         101 VNVAMDFVG---SQATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             EEEEEESSC---CHHHHHHGGGGEEEEEEEEECC
T ss_pred             ceEEEEecC---cchHHHHHHHHHhCCCEEEEEe
Confidence            888775433   2223444555566566777664

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=81.70  E-value=5.7  Score=34.59  Aligned_cols=76  Identities=17%  Similarity=0.052  Sum_probs=52.2

Q ss_pred             CCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc---------
Q 044572          298 YGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL---------  365 (457)
Q Consensus       298 ~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~---------  365 (457)
                      +++.+|=-| |++.+|..+|+.   .| .+|+.++.+++.++.+.+.++..    ..++.++.+|+.+.-.         
T Consensus         9 enKvalITG-as~GIG~a~a~~la~~G-a~V~~~~r~~~~l~~~~~~l~~~----g~~~~~~~~Dvt~~~~v~~~~~~~~   82 (251)
T d2c07a1           9 ENKVALVTG-AGRGIGREIAKMLAKSV-SHVICISRTQKSCDSVVDEIKSF----GYESSGYAGDVSKKEEISEVINKIL   82 (251)
T ss_dssp             SSCEEEEES-TTSHHHHHHHHHHTTTS-SEEEEEESSHHHHHHHHHHHHTT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            466666445 555566666653   23 48999999999999888877653    1468899999986311         


Q ss_pred             cccCCccEEEECCC
Q 044572          366 SWLVGSDVLVVDPP  379 (457)
Q Consensus       366 ~~~~~~D~vi~DPP  379 (457)
                      +..++.|++|.+..
T Consensus        83 ~~~g~iDilvnnag   96 (251)
T d2c07a1          83 TEHKNVDILVNNAG   96 (251)
T ss_dssp             HHCSCCCEEEECCC
T ss_pred             HhcCCceeeeeccc
Confidence            11257899988765