Citrus Sinensis ID: 044576

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MLFFYFFLSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKALLQKAQEPPKKKDKQVVDEVSTGV
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHccccccEEEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEEEcccccccHHHHHHHHHHHHHHHcccccEEccccccccEEEEEEccccHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcccHHHHHHHHHHHHHcccEEEEEEEEEEEccccccccHHHHHHHHHHHHHcccEEEEEEEEcccHHccHHHHHHHHHHHHHHHHHHccHcccccccccEEEEEcccccHHHHHHHHHHHccHcccccccccc
Coil and Loop (DISEMBL)
MLFFYFFLSKYRYEQQKKKKGQQKKSAANRMdlkelkmgynidqhDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGElaseenknfrdrniFIILVPNKallqkaqeppkkkdkqVVDEVSTGV
Flexible Loop (DISEMBL)
MLFFYFFLSKYryeqqkkkkgqqkksaanrmdlkelKMGYNIDQHDYSVRLKAArkflkdgdkvkvivnlkgrenefrNIAIELIRRFQNDVGELAseenknfrdrnIFIILVPNKAllqkaqeppkkkdkqvvdevstgv
Low Complexity Region (SEG)
MLFFYFFLSKYRYEqqkkkkgqqkkSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKALLQKAQEPPKKKDKQVVDEVSTGV
Disordered region (IsUnstruct)
*LFFYFFLSKYRY**********************LKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKAL***********************
Disordered Region (DISOPRED)
MLFFYFFLSKY*******************MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFII******************************
Disordered Region (DISEMBL)
MLFFYFFLSKYRYE*************ANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKALLQK********************
Disordered Region (DISPRO)
MLFFYFFLSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKA*LQK********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLFFYFFLSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKALLQKAQEPPKKKDKQVVDEVSTGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
B1XM04	178	Translation initiation fa	yes	no	0.758	0.601	0.409	6e-17
Q85G77	175	Translation initiation fa	N/A	no	0.744	0.6	0.445	2e-16
B2IY66	177	Translation initiation fa	yes	no	0.737	0.587	0.423	2e-16
Q8YNE3	177	Translation initiation fa	yes	no	0.737	0.587	0.414	4e-16
Q3MBH6	177	Translation initiation fa	yes	no	0.737	0.587	0.414	4e-16
Q8R9C2	180	Translation initiation fa	yes	no	0.758	0.594	0.409	7e-16
Q7NJS6	199	Translation initiation fa	yes	no	0.758	0.537	0.390	1e-15
Q1XDQ6	182	Translation initiation fa	N/A	no	0.744	0.576	0.379	3e-15
Q0IDZ5	212	Translation initiation fa	yes	no	0.851	0.566	0.437	4e-15
P51231	182	Translation initiation fa	N/A	no	0.744	0.576	0.388	5e-15

>sp|B1XM04|IF3_SYNP2 Translation initiation factor IF-3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=infC PE=3 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 73/110 (66%), Gaps = 3/110 (2%)

Query: 9   SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
            KY++EQ+K+ +  +KK   +  DLKE+KM Y I++HDY VR+ +A++FLK GDKVK  +
Sbjct: 70  GKYKFEQEKRAREAKKKQ--HNADLKEVKMRYKIEEHDYQVRVNSAQRFLKSGDKVKATI 127

Query: 69  NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKA 117
             +GRE +  N+A +L+ R   D+ E+   + +  R+ RN+ +IL P K+
Sbjct: 128 TFRGREIQHSNLAQKLLDRMAKDLEEVGEIQQRPKREGRNMMMILAPKKS 177

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

>sp|Q85G77|IF3C_CYAME Translation initiation factor IF-3, chloroplastic OS=Cyanidioschyzon merolae GN=infC PE=3 SV=1

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 5/110 (4%)

Query: 9   SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
            KY++E +KK K ++K    N+  LKE++M YN+++HDY VRL  A KFLK GDKVKV +
Sbjct: 70  GKYKFELEKKAKAKRK----NQSQLKEIQMSYNMEEHDYQVRLSQACKFLKAGDKVKVTL 125

Query: 69  NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKA 117
            LKGRE +   +A   + +FQ DV  LA       ++ RN+  I VP K+
Sbjct: 126 MLKGREMQHLELAQNKMAQFQADVSSLAQLAKPPSQEGRNLSAIFVPKKS 175

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.

Cyanidioschyzon merolae (taxid: 45157)

>sp|B2IY66|IF3_NOSP7 Translation initiation factor IF-3 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=infC PE=3 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 72/111 (64%), Gaps = 7/111 (6%)

Query: 9   SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
            KY++EQ+KK +  +KK   +  D+KE+KM Y I++HDY+VR+K A +FLKDGDKVK  V
Sbjct: 71  GKYKFEQEKKAREARKKQ--HTADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATV 128

Query: 69  NLKGRENEFRNIAIELIRRFQNDV---GELASEENKNFRDRNIFIILVPNK 116
             +GRE +  ++A +L++R   D+   GEL     K    RN+ +++ P K
Sbjct: 129 MFRGREIQHSDLAEDLLKRMATDLEPFGELQQAPKKE--GRNMMMLISPKK 177

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

>sp|Q8YNE3|IF3_NOSS1 Translation initiation factor IF-3 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=infC PE=3 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 72/111 (64%), Gaps = 7/111 (6%)

Query: 9   SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
            KY++EQ+KK +  +KK   +  D+KE+KM Y I++HDY+VR+K A +FLKDGDKVK  V
Sbjct: 71  GKYKFEQEKKAREARKKQ--HTADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATV 128

Query: 69  NLKGRENEFRNIAIELIRRFQNDV---GELASEENKNFRDRNIFIILVPNK 116
             +GRE +  ++A +L++R   D+   GE+     K    RN+ +++ P K
Sbjct: 129 MFRGREIQHSDLAEDLLKRMATDLEPFGEVQQAPKKE--GRNMMMLISPKK 177

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q3MBH6|IF3_ANAVT Translation initiation factor IF-3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=infC PE=3 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 72/111 (64%), Gaps = 7/111 (6%)

Query: 9   SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
            KY++EQ+KK +  +KK   +  D+KE+KM Y I++HDY+VR+K A +FLKDGDKVK  V
Sbjct: 71  GKYKFEQEKKAREARKKQ--HTADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATV 128

Query: 69  NLKGRENEFRNIAIELIRRFQNDV---GELASEENKNFRDRNIFIILVPNK 116
             +GRE +  ++A +L++R   D+   GE+     K    RN+ +++ P K
Sbjct: 129 MFRGREIQHSDLAEDLLKRMATDLEPFGEVQQAPKKE--GRNMMMLISPKK 177

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

>sp|Q8R9C2|IF3_THETN Translation initiation factor IF-3 OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=infC PE=3 SV=1

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 71/110 (64%), Gaps = 3/110 (2%)

Query: 8   LSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVI 67
             KYRYE  K++K  +KK     +++KE++M  NI+ HD+ V+LK+A KFLKDGDKVKV 
Sbjct: 72  FGKYRYELSKREKEAKKKQKI--INVKEIRMSPNIEDHDFGVKLKSAIKFLKDGDKVKVT 129

Query: 68  VNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNK 116
           +  +GRE    ++A +L++RF  ++ E  + E     D RN+ +++ P K
Sbjct: 130 IRFRGREAAHTSLAEDLLKRFAEELREYGNVEKAPSMDGRNMMMVIAPKK 179

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

>sp|Q7NJS6|IF3_GLOVI Translation initiation factor IF-3 OS=Gloeobacter violaceus (strain PCC 7421) GN=infC PE=3 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 68/110 (61%), Gaps = 3/110 (2%)

Query: 9   SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
            KY++EQ+K+ K  +KK   +  D+KE+KM Y I +HDY VRL+   +FLKDGDKVK  +
Sbjct: 92  GKYKFEQEKRAKEARKKQ--HTADVKEVKMRYTIGEHDYQVRLRDTIRFLKDGDKVKATI 149

Query: 69  NLKGRENEFRNIAIELIRRFQNDVGELAS-EENKNFRDRNIFIILVPNKA 117
             +GRE +  N+A +L+ +   D  E+   ++  +   RN+ +IL P + 
Sbjct: 150 MFRGREIQHANLAKDLLMQLAADSAEIGEVQQEPSVEGRNMIMILSPKRT 199

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.

Gloeobacter violaceus (strain PCC 7421) (taxid: 251221)

>sp|Q1XDQ6|IF3C_PORYE Translation initiation factor IF-3, chloroplastic OS=Porphyra yezoensis GN=infC PE=3 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 69/108 (63%), Gaps = 3/108 (2%)

Query: 10  KYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
           KY++ Q+K+ +  +KK   +   +KE+KM Y I++HDY VR+  A KF++ GDKVK  + 
Sbjct: 75  KYKFTQEKRAREAKKKQ--HNSSIKEVKMRYKIEEHDYKVRINQASKFIQAGDKVKATIT 132

Query: 70  LKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNK 116
            +GRE +  N+AI+L+ +  +D+  +A  +    RD RN+ ++L P K
Sbjct: 133 FRGREIQHSNLAIDLLNKMASDLNAIAEIQQAPSRDGRNVIMLLSPKK 180

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.

Porphyra yezoensis (taxid: 2788)

>sp|Q0IDZ5|IF3_SYNS3 Translation initiation factor IF-3 OS=Synechococcus sp. (strain CC9311) GN=infC PE=3 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/128 (43%), Positives = 81/128 (63%), Gaps = 8/128 (6%)

Query: 9   SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
            K+++EQ+KK K  +KKS  ++ ++KE+KM Y IDQHDY VR+  A++FLK GDKVK  V
Sbjct: 75  GKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCTV 132

Query: 69  NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQKAQEPPK 127
             +GRE +   +A  L+RR   D+ E A  +    R+ RN+ + L P KA L K     K
Sbjct: 133 IFRGREIQHTALAEVLLRRMAKDLEEPAEVQQPPKREGRNMIMFLTPRKAPLVK-----K 187

Query: 128 KKDKQVVD 135
            KD++VV+
Sbjct: 188 DKDEEVVN 195

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.

Synechococcus sp. (strain CC9311) (taxid: 64471)

>sp|P51231|IF3C_PORPU Translation initiation factor IF-3, chloroplastic OS=Porphyra purpurea GN=infC PE=3 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 67/108 (62%), Gaps = 3/108 (2%)

Query: 10  KYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
           KY++ Q+K+ +  +KK   +   +KE+KM Y I++HDY VR+  A KFL+ GDKVK  + 
Sbjct: 75  KYKFTQEKRAREAKKKQ--HNSSIKEVKMRYKIEEHDYKVRINQASKFLQSGDKVKATIT 132

Query: 70  LKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNK 116
            +GRE +  N+AI L+ +   D+  +A  +    RD RN+ ++L P K
Sbjct: 133 FRGREIQHSNLAINLLNKMAADLVTIAEIQQAPSRDGRNVIMLLSPKK 180

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.

Porphyra purpurea (taxid: 2787)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
255585038	274	translation initiation factor if-3, puta	0.936	0.481	0.886	1e-55
224143922	278	predicted protein [Populus trichocarpa]	0.936	0.474	0.886	2e-55
449453964	299	PREDICTED: translation initiation factor	0.936	0.441	0.878	2e-54
449511545	299	PREDICTED: LOW QUALITY PROTEIN: translat	0.936	0.441	0.871	8e-54
363807493	275	uncharacterized protein LOC100780734 [Gl	0.936	0.48	0.848	4e-52
225445818	272	PREDICTED: translation initiation factor	0.936	0.485	0.840	6e-52
356500687	275	PREDICTED: translation initiation factor	0.921	0.472	0.853	2e-51
351720878	243	uncharacterized protein LOC100499836 [Gl	0.829	0.481	0.829	2e-50
357479997	266	Translation initiation factor IF-3 [Medi	0.921	0.488	0.796	3e-47
297821667	292	hypothetical protein ARALYDRAFT_481264 [	0.921	0.445	0.766	6e-46

>gi|255585038|ref|XP_002533227.1| translation initiation factor if-3, putative [Ricinus communis] gi|223526947|gb|EEF29148.1| translation initiation factor if-3, putative [Ricinus communis]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 117/132 (88%), Positives = 123/132 (93%)

Query: 10  KYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
           KYRYE QKKKKGQQKKSAA RMDLKELKMGYNIDQHDY VRL+AARKFLKDGDKVKVIVN
Sbjct: 143 KYRYELQKKKKGQQKKSAATRMDLKELKMGYNIDQHDYDVRLRAARKFLKDGDKVKVIVN 202

Query: 70  LKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKALLQKAQEPPKKK 129
           LKGRENEFRNIAIELIRRFQNDVGELA+EE KNFRDRNIFI L PNKA+LQK+QEPPKK+
Sbjct: 203 LKGRENEFRNIAIELIRRFQNDVGELATEETKNFRDRNIFITLAPNKAILQKSQEPPKKR 262

Query: 130 DKQVVDEVSTGV 141
           DK  V+EVS GV
Sbjct: 263 DKSAVNEVSAGV 274

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143922|ref|XP_002325123.1| predicted protein [Populus trichocarpa] gi|222866557|gb|EEF03688.1| predicted protein [Populus trichocarpa]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 117/132 (88%), Positives = 124/132 (93%)

Query: 10  KYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
           K+RYEQQKKK+GQQKKSAA+RMDLKELKMGYNIDQHDY VRL+AARKFLKDGDKVKVIVN
Sbjct: 147 KFRYEQQKKKRGQQKKSAASRMDLKELKMGYNIDQHDYDVRLRAARKFLKDGDKVKVIVN 206

Query: 70  LKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKALLQKAQEPPKKK 129
           LKGRENEFRN AIEL+RRFQNDVGELA+EE+KNFRDRN FI LVPNKALLQKAQEPPKKK
Sbjct: 207 LKGRENEFRNNAIELLRRFQNDVGELATEESKNFRDRNAFITLVPNKALLQKAQEPPKKK 266

Query: 130 DKQVVDEVSTGV 141
           DK   DEVS GV
Sbjct: 267 DKSAADEVSAGV 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453964|ref|XP_004144726.1| PREDICTED: translation initiation factor IF-3-like [Cucumis sativus]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 116/132 (87%), Positives = 123/132 (93%)

Query: 10  KYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
           KYRYE QKKK+GQQKKSAA RMDLKELKMGYNIDQHDYSVRLKAA+KFLKDGDKVKVIVN
Sbjct: 168 KYRYELQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVN 227

Query: 70  LKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKALLQKAQEPPKKK 129
           LKGRENEFRNIAIELIRRFQ +VGELA+EE KNFRDRNIFI+LVPNKA+LQKAQEPPKKK
Sbjct: 228 LKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKK 287

Query: 130 DKQVVDEVSTGV 141
           DK  V+ VS  V
Sbjct: 288 DKPAVNGVSASV 299

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511545|ref|XP_004163986.1| PREDICTED: LOW QUALITY PROTEIN: translation initiation factor IF-3-like [Cucumis sativus]

 Score =  214 bits (546), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 115/132 (87%), Positives = 122/132 (92%)

Query: 10  KYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
           KYRYE QKKK+GQQKKSAA RMDLKELKMGYNIDQHDYSVRLKAA+KFLKDGDKVKVIVN
Sbjct: 168 KYRYELQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVN 227

Query: 70  LKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKALLQKAQEPPKKK 129
           LKGRENEFRNIAIELIRRFQ +VGELA+EE KNFRDRNIFI+LVPNKA+LQKAQEPPKK 
Sbjct: 228 LKGRENEFRNIAIELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKX 287

Query: 130 DKQVVDEVSTGV 141
           DK  V+ VS  V
Sbjct: 288 DKPAVNGVSASV 299

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807493|ref|NP_001242651.1| uncharacterized protein LOC100780734 [Glycine max] gi|255638877|gb|ACU19741.1| unknown [Glycine max]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 112/132 (84%), Positives = 119/132 (90%)

Query: 9   SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
           SKYRYEQQKKK+GQQKKSAANRMDLKELKMGYNID+HDYSVRLKAA+KFLKDG+KVKVIV
Sbjct: 141 SKYRYEQQKKKRGQQKKSAANRMDLKELKMGYNIDEHDYSVRLKAAQKFLKDGNKVKVIV 200

Query: 69  NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKALLQKAQEPPKK 128
           NLKGRENEFRN+AI LI RFQNDVGEL  EE KNFRDRNIFIILVPNK  +QK QEPPKK
Sbjct: 201 NLKGRENEFRNMAIALITRFQNDVGELGIEETKNFRDRNIFIILVPNKVAMQKTQEPPKK 260

Query: 129 KDKQVVDEVSTG 140
           +DK   DEVS  
Sbjct: 261 RDKSAADEVSVS 272

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445818|ref|XP_002276984.1| PREDICTED: translation initiation factor IF-3 [Vitis vinifera] gi|297743667|emb|CBI36550.3| unnamed protein product [Vitis vinifera]

 Score =  208 bits (529), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 111/132 (84%), Positives = 119/132 (90%)

Query: 10  KYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
           KYRYE QKKK+GQQKKSAANRMDLKELKMGYNID HDYSVRLKAARKFL+DGDKVK+IVN
Sbjct: 141 KYRYELQKKKRGQQKKSAANRMDLKELKMGYNIDSHDYSVRLKAARKFLQDGDKVKIIVN 200

Query: 70  LKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKALLQKAQEPPKKK 129
           LKGRENEFRNIAIELIRRFQNDVGELA+EE+KNF  RNIFI+LVPNKALLQK QE  KK 
Sbjct: 201 LKGRENEFRNIAIELIRRFQNDVGELATEESKNFSVRNIFIVLVPNKALLQKGQESSKKT 260

Query: 130 DKQVVDEVSTGV 141
           +K    E+S GV
Sbjct: 261 EKSAATEISAGV 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500687|ref|XP_003519163.1| PREDICTED: translation initiation factor IF-3-like isoform 1 [Glycine max]

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 111/130 (85%), Positives = 118/130 (90%)

Query: 9   SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
           SKYRYEQQKKK+ QQKKSAANRMDLKELKMGYNID+HDYSVRLKAA+KFLKDGDKVKVIV
Sbjct: 141 SKYRYEQQKKKREQQKKSAANRMDLKELKMGYNIDEHDYSVRLKAAQKFLKDGDKVKVIV 200

Query: 69  NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKALLQKAQEPPKK 128
           NLKGRENEFRN+AI LI RFQNDVGEL  EE KNFRDRNIFIILVPNK  +QK QEPPKK
Sbjct: 201 NLKGRENEFRNMAIGLITRFQNDVGELGIEETKNFRDRNIFIILVPNKVAVQKTQEPPKK 260

Query: 129 KDKQVVDEVS 138
           +DK   DEV+
Sbjct: 261 RDKSAADEVT 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720878|ref|NP_001236679.1| uncharacterized protein LOC100499836 [Glycine max] gi|255627037|gb|ACU13863.1| unknown [Glycine max]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/117 (82%), Positives = 107/117 (91%)

Query: 25  KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIEL 84
           +SAANRMDLKELKMGYNIDQHDYSVRLKAA+KFLKDGDKVKVIVNLKGRE EFRNIAIEL
Sbjct: 124 RSAANRMDLKELKMGYNIDQHDYSVRLKAAQKFLKDGDKVKVIVNLKGRETEFRNIAIEL 183

Query: 85  IRRFQNDVGELASEENKNFRDRNIFIILVPNKALLQKAQEPPKKKDKQVVDEVSTGV 141
           I+RFQ+DVGELA+EE K+FRDRN+ I++VP KA LQKAQEPPK+KD    DEVS GV
Sbjct: 184 IKRFQSDVGELATEETKSFRDRNMSIVMVPKKAALQKAQEPPKRKDMSAADEVSAGV 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479997|ref|XP_003610284.1| Translation initiation factor IF-3 [Medicago truncatula] gi|355511339|gb|AES92481.1| Translation initiation factor IF-3 [Medicago truncatula]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 106/133 (79%), Positives = 113/133 (84%), Gaps = 3/133 (2%)

Query: 9   SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
           SKYRYE QKKK+ QQKKSAA+RMDLKELKMGYNIDQHDYSVRLKAARKFL DGDKVKVIV
Sbjct: 135 SKYRYELQKKKRDQQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVKVIV 194

Query: 69  NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKALLQKAQEPPKK 128
           NLKGRE EFRN AIELIRRFQNDVG+LA+EE KNFRD+NIFI L+PNK  +QK QE P K
Sbjct: 195 NLKGREKEFRNNAIELIRRFQNDVGKLATEEAKNFRDKNIFITLIPNKTEVQKPQETPTK 254

Query: 129 KDKQVVDEVSTGV 141
                 DEVS  V
Sbjct: 255 A---ATDEVSVSV 264

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821667|ref|XP_002878716.1| hypothetical protein ARALYDRAFT_481264 [Arabidopsis lyrata subsp. lyrata] gi|297324555|gb|EFH54975.1| hypothetical protein ARALYDRAFT_481264 [Arabidopsis lyrata subsp. lyrata]

 Score =  188 bits (478), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 102/133 (76%), Positives = 120/133 (90%), Gaps = 3/133 (2%)

Query: 9   SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
           SKYRYEQQK+KK QQKK+   RMDLKELKMGYNIDQHDYSVRL+AA+KFL+DGDKVKVIV
Sbjct: 149 SKYRYEQQKRKKDQQKKT--TRMDLKELKMGYNIDQHDYSVRLRAAQKFLQDGDKVKVIV 206

Query: 69  NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKALLQKAQEPP-K 127
           ++KGRENEFRNIAIEL+RRFQ ++GELA+EE+KNFRDRN+FIILVPNK +++K QEPP +
Sbjct: 207 SMKGRENEFRNIAIELLRRFQTEIGELATEESKNFRDRNLFIILVPNKEMIRKPQEPPSR 266

Query: 128 KKDKQVVDEVSTG 140
           KK KQ  +EVS  
Sbjct: 267 KKKKQSENEVSAA 279

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
TAIR|locus:2131929	281	AT4G30690 [Arabidopsis thalian	0.907	0.455	0.702	2.4e-44
TAIR|locus:2061380	312	AT2G24060 [Arabidopsis thalian	0.907	0.410	0.694	2.8e-43
TIGR_CMR|CHY_1578	169	CHY_1578 "translation initiati	0.730	0.609	0.358	7.1e-13
TIGR_CMR|NSE_0293	189	NSE_0293 "translation initiati	0.737	0.550	0.351	3.1e-12
TIGR_CMR|SPO_2638	182	SPO_2638 "translation initiati	0.730	0.565	0.339	3.9e-12
UNIPROTKB|Q0C535	180	infC "Translation initiation f	0.588	0.461	0.345	2.8e-11
TIGR_CMR|SO_2300	178	SO_2300 "translation initiatio	0.617	0.488	0.329	4.5e-11
TIGR_CMR|BA_4819	167	BA_4819 "translation initiatio	0.595	0.502	0.341	7.4e-11
UNIPROTKB|P0A707	180	infC "protein chain initiation	0.609	0.477	0.329	1.5e-10
TIGR_CMR|ECH_0007	173	ECH_0007 "translation initiati	0.773	0.630	0.324	2.5e-10

TAIR|locus:2131929 AT4G30690 [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 92/131 (70%), Positives = 108/131 (82%)

Query:     9 SKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
             SKYRYE           +   RMDLKELKMGYNIDQHDYSVR++AARKFL+DGDKVKVIV
Sbjct:   143 SKYRYEQQKRKKEQQKKTT--RMDLKELKMGYNIDQHDYSVRMRAARKFLQDGDKVKVIV 200

Query:    69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKALLQKAQEPP-K 127
             N+KGRENEFRNIAIEL+RRFQ ++GEL +EE+KNFRDRN+FI+LVPNK +++K QEPP K
Sbjct:   201 NMKGRENEFRNIAIELLRRFQTEIGELGTEESKNFRDRNLFIVLVPNKEVIRKVQEPPPK 260

Query:   128 KKDKQVVDEVS 138
             KK K   D+VS
Sbjct:   261 KKKKPADDKVS 271

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2061380 AT2G24060 [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 91/131 (69%), Positives = 108/131 (82%)

Query:     9 SKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
             SKYRYE           +   RMDLKELKMGYNIDQHDYSVRL+AA+KFL+DGDKVKVIV
Sbjct:   147 SKYRYEQQKRKKDQQKKTT--RMDLKELKMGYNIDQHDYSVRLRAAQKFLQDGDKVKVIV 204

Query:    69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKALLQKAQEPP-K 127
             ++KGRENEFRNIAIEL+RRFQ ++GELA+EE+KNFRDRN+FIILVPNK +++K QEPP +
Sbjct:   205 SMKGRENEFRNIAIELLRRFQTEIGELATEESKNFRDRNMFIILVPNKEMIRKPQEPPTR 264

Query:   128 KKDKQVVDEVS 138
             KK K   +E S
Sbjct:   265 KKKKTAENEAS 275

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TIGR_CMR|CHY_1578 CHY_1578 "translation initiation factor IF-3" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 38/106 (35%), Positives = 58/106 (54%)

Query:    10 KYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
             KYRY+                +++KE+K+   I++HD+ V+L+   +FL+DGDKVKV V 
Sbjct:    64 KYRYQQSKKEKEARKKQKI--INVKEIKIRPTIEEHDFQVKLRNVLRFLEDGDKVKVTVM 121

Query:    70 LKGRENEFRNIAIELIRRFQNDVGELASEENK-NFRDRNIFIILVP 114
              +GRE     IA EL+ +   +VG +A  E       RN+ +IL P
Sbjct:   122 FRGRELSHPEIAYELLNKMAQEVGSIAVVERPAKLEGRNMIMILAP 167

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

TIGR_CMR|NSE_0293 NSE_0293 "translation initiation factor IF-3" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 38/108 (35%), Positives = 59/108 (54%)

Query:    10 KYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
             KY+YE             ++   +KE+++  +I   D S +LK  R+FL++ DKVKV+V 
Sbjct:    81 KYKYEAKKESNLKRRKQKSST--IKEVQLRQSIGAGDLSTKLKKIREFLQEEDKVKVVVR 138

Query:    70 LKGRENEFRNIAIELIRRFQNDVGELASEENKNF--RDRNIFIILVPN 115
             L+GRE   +N+AI L+ +   +VG    +  K     + N FIIL PN
Sbjct:   139 LRGREMTNKNLAINLLNKVVEEVGSEVGKLEKEIVQNNNNFFIILAPN 186

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

TIGR_CMR|SPO_2638 SPO_2638 "translation initiation factor IF-3" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 36/106 (33%), Positives = 56/106 (52%)

Query:    10 KYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
             KY+YE                +++KE+K   N D HDY V+++   KFL++GDKVKV + 
Sbjct:    75 KYKYEQQKRESEARKKQKI--IEVKEVKFRPNTDTHDYEVKMRNVYKFLENGDKVKVTLR 132

Query:    70 LKGRENEFRNIAIELIRRFQNDVGELASEENK-NFRDRNIFIILVP 114
              +GRE   +N+  EL+ R   DV E+   EN      R + +++ P
Sbjct:   133 FRGREMAHQNLGRELLERVAEDVKEMGKIENMPKMEGRQMIMMIGP 178

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

UNIPROTKB|Q0C535 infC "Translation initiation factor IF-3" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 29/84 (34%), Positives = 51/84 (60%)

Query:    32 DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQND 91
             +LKE+K+  NID HDY V+ +A  +F ++GDKVK+ +  +GRE   +++ +EL+ + + D
Sbjct:    96 ELKEIKIRPNIDTHDYEVKARAIARFFEEGDKVKITLRFRGREMAHQHLGMELLEKVKKD 155

Query:    92 VGELASEE-NKNFRDRNIFIILVP 114
               E A  E       + + ++L P
Sbjct:   156 FEETAKVELEPKLEGKQMTMVLAP 179

GO:0005737 "cytoplasm" evidence=ISS

TIGR_CMR|SO_2300 SO_2300 "translation initiation factor IF-3" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 29/88 (32%), Positives = 52/88 (59%)

Query:    30 RMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQ 89
             ++ +KE+K     D++DY V+L+   +FL+DGDK K+ +  +GRE   +N+ ++L+ R +
Sbjct:    90 QVQVKEIKFRPGTDENDYQVKLRNLIRFLEDGDKAKITLRFRGREMAHQNLGMDLLNRIK 149

Query:    90 NDVGELASEEN-KNFRDRNIFIILVPNK 116
              D+ E A  E+      R   ++L P K
Sbjct:   150 TDLDEYAVVESFPKMEGRQAIMVLAPKK 177

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

TIGR_CMR|BA_4819 BA_4819 "translation initiation factor IF-3" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 29/85 (34%), Positives = 52/85 (61%)

Query:    31 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQN 90
             + +KE+++   ID+HD++ +L+ A KFL+ GDKVK  +  KGR    + I   ++ RF  
Sbjct:    79 ISMKEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIRFKGRAITHKEIGQRVLDRFSE 138

Query:    91 DVGELASEENK-NFRDRNIFIILVP 114
                E+++ E+K     R++F++L P
Sbjct:   139 ACAEVSTIESKPKMEGRSMFLVLAP 163

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

UNIPROTKB|P0A707 infC "protein chain initiation factor IF-3" [Escherichia coli K-12 (taxid:83333)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 29/88 (32%), Positives = 53/88 (60%)

Query:    31 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQN 90
             + +KE+K     D+ DY V+L++  +FL++GDK K+ +  +GRE   + I +E++ R ++
Sbjct:    91 IQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKD 150

Query:    91 DVGELASEEN--KNFRDRNIFIILVPNK 116
             D+ ELA  E+       R + ++L P K
Sbjct:   151 DLQELAVVESFPTKIEGRQMIMVLAPKK 178

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

GO:0032790 "ribosome disassembly" evidence=IMP

GO:0009409 "response to cold" evidence=IDA

GO:0006413 "translational initiation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA;IDA

GO:0043022 "ribosome binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|ECH_0007 ECH_0007 "translation initiation factor IF-3" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 36/111 (32%), Positives = 55/111 (49%)

Query:     6 FFLSKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVK 65
             F  SKYRY                 + +KELK   NI  +DY+V+L   R F++ GDKVK
Sbjct:    65 FDYSKYRYSHKKKISDSKKKQKT--IIVKELKFKLNIGDNDYNVKLNMLRGFIERGDKVK 122

Query:    66 VIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNK 116
             + +   GRE     + +E+I R   D  ++A  EN   ++ NI  +++  K
Sbjct:   123 ISLRFIGREILHPEVGMEIIERLIRDTADIAKPENLPKKEGNIINMVLTAK 173

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	141
PRK00028	177	PRK00028, infC, translation initiation factor IF-3	1e-28
COG0290	176	COG0290, InfC, Translation initiation factor 3 (IF	2e-24
pfam00707	87	pfam00707, IF3_C, Translation initiation factor IF	4e-24
CHL00199	182	CHL00199, infC, translation initiation factor 3; P	3e-22
TIGR00168	165	TIGR00168, infC, translation initiation factor IF-	2e-21

>gnl|CDD|234582 PRK00028, infC, translation initiation factor IF-3; Reviewed

 Score =  102 bits (258), Expect = 1e-28
 Identities = 42/110 (38%), Positives = 68/110 (61%), Gaps = 3/110 (2%)

Query: 9   SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
            K++YEQ+KK+K  +KK     +++KE+K    ID+HDY  +LK AR+FL+ GDKVKV +
Sbjct: 69  GKFKYEQKKKQKEAKKKQKV--IEVKEIKFRPKIDEHDYETKLKHARRFLEKGDKVKVTL 126

Query: 69  NLKGRENEFRNIAIELIRRFQNDVGELASEENK-NFRDRNIFIILVPNKA 117
             +GRE   + + +EL+ R   D+ ++A  E +     R + ++L P K 
Sbjct: 127 RFRGREIAHKELGMELLERVAEDLEDIAKVEQEPKMEGRQMIMVLAPKKK 176

Length = 177

>gnl|CDD|223367 COG0290, InfC, Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]

 Score = 91.9 bits (229), Expect = 2e-24
 Identities = 40/108 (37%), Positives = 67/108 (62%), Gaps = 3/108 (2%)

Query: 10  KYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
           K++YEQ+KK K  +KK    ++ +KE+K+   ID+HDY  +LK AR+FL+ GDKVKV + 
Sbjct: 69  KFKYEQKKKAKEAKKK--QKQIQVKEIKLRPKIDEHDYETKLKNARRFLEKGDKVKVTIR 126

Query: 70  LKGRENEFRNIAIELIRRFQNDVGELAS-EENKNFRDRNIFIILVPNK 116
            +GRE   + + ++++ R   D+ ++A  E       R + ++L P K
Sbjct: 127 FRGREMAHQELGVKVLERVAEDLEDIAKVESEPKMEGRQMIMVLAPKK 174

Length = 176

>gnl|CDD|201407 pfam00707, IF3_C, Translation initiation factor IF-3, C-terminal domain

 Score = 88.6 bits (221), Expect = 4e-24
 Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 1/87 (1%)

Query: 30  RMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQ 89
            + +KE+K+   ID+HD  V+LK ARKFL+ GDKVKV +  +GRE     +  EL+ RF 
Sbjct: 1   VVQVKEIKLRPKIDEHDLEVKLKHARKFLEKGDKVKVTIRFRGREIAHPELGRELLDRFA 60

Query: 90  NDVGELASEENK-NFRDRNIFIILVPN 115
            D+ ++A+ E       RN+ +IL P 
Sbjct: 61  EDLEDIATVEKPPKMEGRNMTMILAPK 87

Length = 87

>gnl|CDD|164575 CHL00199, infC, translation initiation factor 3; Provisional

 Score = 86.5 bits (214), Expect = 3e-22
 Identities = 43/108 (39%), Positives = 67/108 (62%), Gaps = 3/108 (2%)

Query: 10  KYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
           KY++ Q+K+ K  +KK   +   +KE+KM Y I++HDY VR+  A KFL+ GDKVK  + 
Sbjct: 75  KYKFTQEKRAKEAKKKQHNSS--IKEVKMRYKIEEHDYKVRINQAFKFLQAGDKVKATLT 132

Query: 70  LKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNK 116
            +GRE +  N+AI L+ +   D+  +A  +    +D RN+ +IL P K
Sbjct: 133 FRGREIQHLNLAINLLNKMAADLSSIAEIQQPPSQDGRNMIMILSPKK 180

Length = 182

>gnl|CDD|129272 TIGR00168, infC, translation initiation factor IF-3

 Score = 83.6 bits (207), Expect = 2e-21
 Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 4/109 (3%)

Query: 10  KYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
           KY+YEQ+KKKK  +K      + +KE+KM   ID+HD   +LK A +FL+ GDKVK  V 
Sbjct: 58  KYKYEQEKKKKEAKKNQKI--IQVKEVKMRPTIDEHDLQFKLKQAIRFLEKGDKVKFTVR 115

Query: 70  LKGRENEFRNIAIELIRRFQNDVGELASEENKNFR--DRNIFIILVPNK 116
            +GRE+    +  +++ RF  DV ++A  E    +   R + ++L P K
Sbjct: 116 FRGRESTHIELGEKVLDRFYTDVADVAEVEKPPTKSEGRMMSMLLAPKK 164

infC uses abnormal initiation codons such as AUA, AUC, and CUG which render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression [Protein synthesis, Translation factors]. Length = 165

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
COG0290	176	InfC Translation initiation factor 3 (IF-3) [Trans	100.0
CHL00199	182	infC translation initiation factor 3; Provisional	100.0
TIGR00168	165	infC translation initiation factor IF-3. render it	100.0
PRK00028	177	infC translation initiation factor IF-3; Reviewed	100.0
PF00707	88	IF3_C: Translation initiation factor IF-3, C-termi	99.97
PF14877	181	mIF3: Mitochondrial translation initiation factor	96.79

>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.2e-49  Score=305.09  Aligned_cols=115  Identities=35%  Similarity=0.666  Sum_probs=112.3

Q ss_pred             eEEEeecchhHHHHHHHHHHhhhhccCCCcceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHHH
Q 044576            2 LFFYFFLSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIA   81 (141)
Q Consensus         2 VckimDygK~kYe~~Kk~ke~kKkq~~~~~~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~g   81 (141)
                      ||||||||||+||++|+++|++|+|  +.+++|||+|+|+||+|||++|++++++||++||+|||+|+|||||++|+|+|
T Consensus        61 VcKImDYGKfkye~~KK~kEakKkQ--k~i~vKEik~rp~Id~hD~~~K~k~~~rFLe~GdkVKvtirfrGRe~~h~elG  138 (176)
T COG0290          61 VCKIMDYGKFKYEQKKKAKEAKKKQ--KQIQVKEIKLRPKIDEHDYETKLKNARRFLEKGDKVKVTIRFRGREMAHQELG  138 (176)
T ss_pred             eeEeeeccchHHHHHHHHHHHhhcC--ceEEEEEEEeecCcCcchHHHHHHHHHHHHHCCCeEEEEEEEechhhhhHHHH
Confidence            8999999999999999999999999  78999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccccc-cCCCcceeEEEEecCcch
Q 044576           82 IELIRRFQNDVGELASEEN-KNFRDRNIFIILVPNKAL  118 (141)
Q Consensus        82 ~~ll~ri~~~l~~~~~ve~-~~~eG~~~~~~l~P~k~~  118 (141)
                      .++|++|.++|+++|.+|+ |+++|++|+|+|+|++++
T Consensus       139 ~~~l~r~~~~~~~~~~ve~~pk~egr~m~m~laPkkkk  176 (176)
T COG0290         139 VKVLERVAEDLEDIAKVESEPKMEGRQMIMVLAPKKKK  176 (176)
T ss_pred             HHHHHHHHHHhhhhheeecccccCCceEEEEEcccCCC
Confidence            9999999999999999998 799999999999998753

>CHL00199 infC translation initiation factor 3; Provisional

Probab=100.00  E-value=2.6e-44  Score=282.05  Aligned_cols=113  Identities=36%  Similarity=0.632  Sum_probs=110.0

Q ss_pred             CeEEEeecchhHHHHHHHHHHhhhhccCCCcceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHH
Q 044576            1 MLFFYFFLSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNI   80 (141)
Q Consensus         1 ~VckimDygK~kYe~~Kk~ke~kKkq~~~~~~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~   80 (141)
                      .||||||||||+||++|+.++++|+|  +.+++|||+|+|+|++|||++|++||++||++||+|+|+|+|||||++|.|+
T Consensus        66 PVCKImdygK~kye~~KK~keakKkq--~~~~~KEirl~~~I~~hDl~~K~k~~~kFL~~G~kVkv~i~frGRE~~~~e~  143 (182)
T CHL00199         66 PVCRIIDYGKYKFTQEKRAKEAKKKQ--HNSSIKEVKMRYKIEEHDYKVRINQAFKFLQAGDKVKATLTFRGREIQHLNL  143 (182)
T ss_pred             CeEEEeehHHHHHHHHHHHHHHHhcc--CCccceEEEecCCCCccHHHHHHHHHHHHHHCCCEEEEEEEEchhHHhhHHH
Confidence            38999999999999999999999999  6789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccccc-cCCCcceeEEEEecC
Q 044576           81 AIELIRRFQNDVGELASEEN-KNFRDRNIFIILVPN  115 (141)
Q Consensus        81 g~~ll~ri~~~l~~~~~ve~-~~~eG~~~~~~l~P~  115 (141)
                      |.++|++|.++|+++|.+|. |+++|++|+|+|+|+
T Consensus       144 g~~ll~r~~~~l~~~a~ve~~pk~eGr~m~~~l~P~  179 (182)
T CHL00199        144 AINLLNKMAADLSSIAEIQQPPSQDGRNMIMILSPK  179 (182)
T ss_pred             HHHHHHHHHHHhhhhheeecCccccCCEEEEEEecC
Confidence            99999999999999999997 799999999999996

>TIGR00168 infC translation initiation factor IF-3

Probab=100.00  E-value=6.1e-44  Score=276.41  Aligned_cols=113  Identities=37%  Similarity=0.600  Sum_probs=109.8

Q ss_pred             eEEEeecchhHHHHHHHHHHhhhhccCCCcceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHHH
Q 044576            2 LFFYFFLSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIA   81 (141)
Q Consensus         2 VckimDygK~kYe~~Kk~ke~kKkq~~~~~~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~g   81 (141)
                      ||||||||||+||++|++++++++|  +.+++|||+|+|+|++|||++|++||++||++||+|+|+|+|||||++|+|+|
T Consensus        50 VckImdy~k~~ye~~KK~ke~kkkq--~~~~~KEi~~~~~I~~hDl~~K~k~~~~FL~kG~kVkv~l~frgRe~~~~e~g  127 (165)
T TIGR00168        50 VCKIMDYGKYKYEQEKKKKEAKKNQ--KIIQVKEVKMRPTIDEHDLQFKLKQAIRFLEKGDKVKFTVRFRGRESTHIELG  127 (165)
T ss_pred             EEEEeeHHHHHHHHHHHHHHHHhcC--CCCcceeEEEcCCCChhhHHHHHHHHHHHHHCCCeEEEEEEEcCCcccCHHHH
Confidence            8999999999999999999999998  77899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccccc-c-CCCcceeEEEEecCc
Q 044576           82 IELIRRFQNDVGELASEEN-K-NFRDRNIFIILVPNK  116 (141)
Q Consensus        82 ~~ll~ri~~~l~~~~~ve~-~-~~eG~~~~~~l~P~k  116 (141)
                      .++|++|.++|+++|.+|. | +++|++|+|+|+|++
T Consensus       128 ~~ll~~i~~~l~~~~~~e~~p~~~eG~~~~~~l~P~~  164 (165)
T TIGR00168       128 EKVLDRFYTDVADVAEVEKPPTKSEGRMMSMLLAPKK  164 (165)
T ss_pred             HHHHHHHHHHhhhhhheecCcccccCCEEEEEEEeCC
Confidence            9999999999999999987 7 899999999999974

render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression

>PRK00028 infC translation initiation factor IF-3; Reviewed

Probab=100.00  E-value=3.8e-43  Score=274.54  Aligned_cols=115  Identities=37%  Similarity=0.670  Sum_probs=110.9

Q ss_pred             CeEEEeecchhHHHHHHHHHHhhhhccCCCcceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHH
Q 044576            1 MLFFYFFLSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNI   80 (141)
Q Consensus         1 ~VckimDygK~kYe~~Kk~ke~kKkq~~~~~~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~   80 (141)
                      -||||||||||+||++|++++++++|  +.+.+|||+|+|+|++|||++|++||++||++||+|+|+|+|||||++|.|+
T Consensus        61 PVckI~dy~k~~ye~~kK~ke~kkkq--~~~~~KEirl~~~I~~hDl~~K~k~~~kFL~kG~kVkv~l~frgre~~~~e~  138 (177)
T PRK00028         61 PVCKIMDYGKFKYEQKKKQKEAKKKQ--KVIEVKEIKFRPKIDEHDYETKLKHARRFLEKGDKVKVTLRFRGREIAHKEL  138 (177)
T ss_pred             CEEEEEeHHHHHHHHHHHHHHhhhcc--CccceeEEEEccCCChhHHHHHHHHHHHHHHCCCEEEEEEEEcCCcccCHHH
Confidence            38999999999999999999999988  6789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccccccc-cCCCcceeEEEEecCcc
Q 044576           81 AIELIRRFQNDVGELASEEN-KNFRDRNIFIILVPNKA  117 (141)
Q Consensus        81 g~~ll~ri~~~l~~~~~ve~-~~~eG~~~~~~l~P~k~  117 (141)
                      |.++|++|.+.|+++|.+|. |+++|++|+|+|+|+++
T Consensus       139 g~~vl~~v~~~l~~~~~~e~~p~~~G~~~~~~l~P~k~  176 (177)
T PRK00028        139 GMELLERVAEDLEDIAKVEQEPKMEGRQMIMVLAPKKK  176 (177)
T ss_pred             HHHHHHHHHHHcchhhheeccccccCCEEEEEEEeCCC
Confidence            99999999999999999987 79999999999999854

>PF00707 IF3_C: Translation initiation factor IF-3, C-terminal domain; InterPro: IPR019815 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria

Probab=99.97  E-value=3.1e-31  Score=185.83  Aligned_cols=86  Identities=33%  Similarity=0.645  Sum_probs=79.9

Q ss_pred             cceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHHHHHHHHHHHHHhcccccccc-cCCCcceeE
Q 044576           31 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEEN-KNFRDRNIF  109 (141)
Q Consensus        31 ~~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~g~~ll~ri~~~l~~~~~ve~-~~~eG~~~~  109 (141)
                      +++|||+|+|+|++|||++|+++|++||++||+|+|+|+||||++++.|.|.++|++|.++|+++|.++. |+++|++|+
T Consensus         2 ~~~KEi~~~~~I~~hDl~~K~k~~~~fL~kG~~Vkv~i~~rgr~~~~~e~~~~~l~~i~~~l~~~~~~~~~~~~~g~~~~   81 (88)
T PF00707_consen    2 VKVKEIRFSPNIDEHDLETKLKQAKKFLEKGHKVKVVIRFRGREMAHPELGEEVLERIIEELKDVGKVEKKPKMEGKQMS   81 (88)
T ss_dssp             SEEEEEEEETT--HHHHHHHHHHHHHHHHTTEEEEEEEE-SSTTTTHHHHHHHHHHHHHHHCTTTEEEEEEEEECCCCEE
T ss_pred             ceEEEEEEecCcChhHHHHHHHHHHHHHHCCCEEEEEEEecCccccchHHHHHHHHHHHHHHhhhcEEeecccccCCEEE
Confidence            6799999999999999999999999999999999999999999999999999999999999999999987 689999999


Q ss_pred             EEEecCc
Q 044576          110 IILVPNK  116 (141)
Q Consensus       110 ~~l~P~k  116 (141)
                      |+|.|++
T Consensus        82 ~~l~P~k   88 (88)
T PF00707_consen   82 MILSPKK   88 (88)
T ss_dssp             EEEEES-
T ss_pred             EEEEeCC
Confidence            9999985

IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2IFE_A 1TIG_A 2CRQ_A.

>PF14877 mIF3: Mitochondrial translation initiation factor

Probab=96.79  E-value=0.0019  Score=51.19  Aligned_cols=44  Identities=25%  Similarity=0.442  Sum_probs=37.7

Q ss_pred             cceeeEEEecCCCcchHH-HHHHHHHHHHhCCCeEEEEEEeCCCc
Q 044576           31 MDLKELKMGYNIDQHDYS-VRLKAARKFLKDGDKVKVIVNLKGRE   74 (141)
Q Consensus        31 ~~~KEIrl~~~I~~HDl~-~K~kqa~~FL~~G~kVkv~l~frGRe   74 (141)
                      ..+|.|+++|.|.++||. -|..-+..-|.+|++|-+.|-=+++.
T Consensus       126 s~~K~i~isW~Is~~DL~~QK~~EI~~~LkKG~kv~iyi~dK~~~  170 (181)
T PF14877_consen  126 SSTKQIKISWQISPDDLKNQKANEIEKRLKKGEKVNIYIDDKDNS  170 (181)
T ss_pred             cccceEEEEEeechHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence            569999999999999996 58889999999999999977645443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	141
1tig_A	94	Translation Initiation Factor 3 C-Terminal Domain L		4e-10
2ife_A	100	Translation Initiation Factor If3 From Escherichia		3e-09
1i96_V	89	Crystal Structure Of The 30s Ribosomal Subunit From		3e-07

>pdb|1TIG|A Chain A, Translation Initiation Factor 3 C-Terminal Domain Length = 94

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 31  MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQN 90
           +++KE+++   I++HD++ +L+ ARKFL+ GDKVK  +  KGR    + I   ++ R   
Sbjct: 5   INVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSE 64
Query: 91  DVGELASEENKNFRD-RNIFIILVP 114
              ++A  E     D RN+F++L P
Sbjct: 65  ACADIAVVETAPKMDGRNMFLVLAP 89

>pdb|2IFE|A Chain A, Translation Initiation Factor If3 From Escherichia Coli Ribosome Binding Domain (Residues 84-180) Length = 100

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 35  ELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGE 94
           E+K     D+ DY V+L++  +FL++GDK K+ +  +GRE   + I +E++ R ++D+ E
Sbjct: 15  EIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQE 74
Query: 95  LASEEN--KNFRDRNIFIILVPNK 116
           LA  E+       R + ++L P K
Sbjct: 75  LAVVESFPTKIEGRQMIMVLAPKK 98

>pdb|1I96|V Chain V, Crystal Structure Of The 30s Ribosomal Subunit From Thermus Thermophilus In Complex With The Translation Initiation Factor If3 (C-Terminal Domain) Length = 89

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 32  DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQND 91
           ++K +K    ID+HDY  +L   ++FL++G KVKV +  +GRE     +   ++ R   D
Sbjct: 1   EVKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTED 60
Query: 92  VGELASEENK-NFRDRNIFIILVPNKA 117
           + +LA  E K     R++ ++L P K 
Sbjct: 61  LKDLAVVEMKPEMLGRDMNMLLAPVKV 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	141
1i96_V	89	Translation initiation factor IF3; 30S ribosome; H	1e-22
1tig_A	94	IF3-C, translation initiation factor 3; IF3 C-term	5e-22
2ife_A	100	Protein (translation initiation factor IF3); gene	2e-21
2crq_A	112	Mitochondrial translational initiation factor 3; r	2e-19

>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1 Length = 89

 Score = 84.5 bits (210), Expect = 1e-22
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 32  DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQND 91
           ++K +K    ID+HDY  +L   ++FL++G KVKV +  +GRE     +   ++ R   D
Sbjct: 1   EVKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTED 60

Query: 92  VGELASEENK-NFRDRNIFIILVPNK 116
           + +LA  E K     R++ ++L P K
Sbjct: 61  LKDLAVVEMKPEMLGRDMNMLLAPVK 86

>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} SCOP: d.68.1.1 Length = 94

 Score = 83.0 bits (206), Expect = 5e-22
 Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 31  MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQN 90
           +++KE+++   I++HD++ +L+ ARKFL+ GDKVK  +  KGR    + I   ++ R   
Sbjct: 5   INVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSE 64

Query: 91  DVGELASEENK-NFRDRNIFIILVPNK 116
              ++A  E       RN+F++L P  
Sbjct: 65  ACADIAVVETAPKMDGRNMFLVLAPKN 91

>2ife_A Protein (translation initiation factor IF3); gene regulation; NMR {Escherichia coli} SCOP: d.68.1.1 Length = 100

 Score = 81.8 bits (203), Expect = 2e-21
 Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 31  MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQN 90
           + +KE+K     D+ DY V+L++  +FL++GDK K+ +  +GRE   + I +E++ R ++
Sbjct: 11  IQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKD 70

Query: 91  DVGELASEENKNFRD--RNIFIILVPNK 116
           D+ ELA  E+   +   R + ++L P K
Sbjct: 71  DLQELAVVESFPTKIEGRQMIMVLAPKK 98

>2crq_A Mitochondrial translational initiation factor 3; ribosome, structural genomics, NPPSFA; NMR {Mus musculus} Length = 112

 Score = 76.7 bits (189), Expect = 2e-19
 Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 3/106 (2%)

Query: 22  QQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIA 81
                       KEL    NI QHD   + K  +++++    V+V +  +    +     
Sbjct: 4   GSSGPKTGPTMTKELVFSSNIGQHDLDTKSKQIQQWIEKKYHVQVTIKRRKDAEQSEEET 63

Query: 82  IELIRRFQNDVGELASEENK---NFRDRNIFIILVPNKALLQKAQE 124
            E+  +    + ++A+  ++            +        +K+  
Sbjct: 64  EEIFNQILQTMPDIATFSSRPKAIRGGTASMCVFRHLSKKEEKSGP 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	141
2ife_A	100	Protein (translation initiation factor IF3); gene	100.0
1tig_A	94	IF3-C, translation initiation factor 3; IF3 C-term	100.0
1i96_V	89	Translation initiation factor IF3; 30S ribosome; H	100.0
2crq_A	112	Mitochondrial translational initiation factor 3; r	100.0

>2ife_A Protein (translation initiation factor IF3); gene regulation; NMR {Escherichia coli} SCOP: d.68.1.1

Probab=100.00  E-value=8.2e-40  Score=234.39  Aligned_cols=96  Identities=33%  Similarity=0.629  Sum_probs=85.8

Q ss_pred             HHhhhhccCCCcceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHHHHHHHHHHHHHhccccccc
Q 044576           20 KGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEE   99 (141)
Q Consensus        20 ke~kKkq~~~~~~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~g~~ll~ri~~~l~~~~~ve   99 (141)
                      +|+||+|  +.+++|||+|+|+||+|||++|+++|++||++||+|+|+|+|||||++|+|+|.++|++|.++|+|+|.+|
T Consensus         2 keakkkq--k~~~vKEikl~p~Id~HD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l~d~~~ve   79 (100)
T 2ife_A            2 EFQKKKQ--KVIQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVE   79 (100)
T ss_dssp             ----------CCEEEEEEECTTCCHHHHTHHHHHHHHHHHTTEEEEEEECCSSCTTCCSSHHHHHHHHHHHHHTTTEEES
T ss_pred             chhhccc--CCceeEEEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHhhhheEEe
Confidence            5789999  78999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c-c-CCCcceeEEEEecCcc
Q 044576          100 N-K-NFRDRNIFIILVPNKA  117 (141)
Q Consensus       100 ~-~-~~eG~~~~~~l~P~k~  117 (141)
                      + | +++|++|+|+|+|+++
T Consensus        80 ~~p~k~eGr~m~m~l~Pkk~   99 (100)
T 2ife_A           80 SFPTKIEGRQMIMVLAPKKK   99 (100)
T ss_dssp             CCCCCCCSSCCEEEEEECCC
T ss_pred             cCcccccCceEEEEEEeCCC
Confidence            7 8 8999999999999863

>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} SCOP: d.68.1.1

Probab=100.00  E-value=1.1e-38  Score=226.31  Aligned_cols=90  Identities=31%  Similarity=0.650  Sum_probs=85.1

Q ss_pred             CCcceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHHHHHHHHHHHHHhcccccccc-cCCCcce
Q 044576           29 NRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEEN-KNFRDRN  107 (141)
Q Consensus        29 ~~~~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~g~~ll~ri~~~l~~~~~ve~-~~~eG~~  107 (141)
                      +.+++|||+|+|+||+|||++|+++|++||++||+|+|+|+|||||++|+|+|.++|++|.++|+|+|.+|+ |+++|++
T Consensus         3 k~~~vKEikl~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l~d~~~ve~~pk~eGr~   82 (94)
T 1tig_A            3 KVINVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSEACADIAVVETAPKMDGRN   82 (94)
T ss_dssp             --CCEEEEEECTTCCHHHHHHHHHHHHHHHHTTCEEEEEEECCSCCTTHHHHHHHHHHHHHHHTTTTEEEEEEEEEETTE
T ss_pred             ccceeEEEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHhhhhhEEecCccccCCE
Confidence            678999999999999999999999999999999999999999999999999999999999999999999997 7999999


Q ss_pred             eEEEEecCcch
Q 044576          108 IFIILVPNKAL  118 (141)
Q Consensus       108 ~~~~l~P~k~~  118 (141)
                      |+|+|+|++++
T Consensus        83 m~m~l~Pkkk~   93 (94)
T 1tig_A           83 MFLVLAPKNDN   93 (94)
T ss_dssp             EEEEEEESCC-
T ss_pred             EEEEEEeCCCC
Confidence            99999998753

>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1

Probab=100.00  E-value=8e-38  Score=219.93  Aligned_cols=87  Identities=31%  Similarity=0.588  Sum_probs=83.7

Q ss_pred             ceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHHHHHHHHHHHHHhcccccccc-cCCCcceeEE
Q 044576           32 DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEEN-KNFRDRNIFI  110 (141)
Q Consensus        32 ~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~g~~ll~ri~~~l~~~~~ve~-~~~eG~~~~~  110 (141)
                      ++|||+|+|+||+|||++|+++|++||++||+|||+|+|||||++|+|+|.++|++|.++|+++|.+|+ |+++|++|+|
T Consensus         1 ~vKEikl~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l~d~~~ve~~pk~eGr~m~m   80 (89)
T 1i96_V            1 EVKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTEDLKDLAVVEMKPEMLGRDMNM   80 (89)
T ss_pred             CceEEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHhhhheEEecCccccCCEEEE
Confidence            479999999999999999999999999999999999999999999999999999999999999999997 7999999999


Q ss_pred             EEecCcch
Q 044576          111 ILVPNKAL  118 (141)
Q Consensus       111 ~l~P~k~~  118 (141)
                      +|+|++++
T Consensus        81 ~l~Pkkkk   88 (89)
T 1i96_V           81 LLAPVKVS   88 (89)
T ss_pred             EEEeCCCC
Confidence            99998643

>2crq_A Mitochondrial translational initiation factor 3; ribosome, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=100.00  E-value=1.3e-37  Score=226.85  Aligned_cols=100  Identities=16%  Similarity=0.217  Sum_probs=93.6

Q ss_pred             HHhhhhccCCCcceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccc-cHHHHHHHHHHHHHHhcccccc
Q 044576           20 KGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENE-FRNIAIELIRRFQNDVGELASE   98 (141)
Q Consensus        20 ke~kKkq~~~~~~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~-~~e~g~~ll~ri~~~l~~~~~v   98 (141)
                      ++++++|  +.+++|||+|+|+||+|||+||+++|++||++||+|+|+|+ ||||++ |+|+|.++|++|.++|+|+|.+
T Consensus         4 ~eakkkq--k~~~vKEIrl~p~Id~HDl~~K~k~a~kFLe~GdKVKvti~-RGRE~~~~~e~g~~lL~r~~~~l~dv~~v   80 (112)
T 2crq_A            4 GSSGPKT--GPTMTKELVFSSNIGQHDLDTKSKQIQQWIEKKYHVQVTIK-RRKDAEQSEEETEEIFNQILQTMPDIATF   80 (112)
T ss_dssp             CCCCCCC--CCSCEEEEEEETTCCHHHHHHHHHHHHHHHHTTCEEEEEEE-CCTTCSCCHHHHHHHHHHHHTTSTTTCEE
T ss_pred             hhhhccc--CCceeEEEEecCCcccchHHHHHHHHHHHHHCCCEEEEEEE-CCccccccHHHHHHHHHHHHHHhhhhhEE
Confidence            4678888  78999999999999999999999999999999999999999 999999 9999999999999999999999


Q ss_pred             cc-cC--CCcceeEEEEecCcchhhhc
Q 044576           99 EN-KN--FRDRNIFIILVPNKALLQKA  122 (141)
Q Consensus        99 e~-~~--~eG~~~~~~l~P~k~~~~~~  122 (141)
                      |. |+  ++|++|+|+|+|++++..++
T Consensus        81 E~~Pk~~~eGr~m~mvL~Pkkkk~~~~  107 (112)
T 2crq_A           81 SSRPKAIRGGTASMCVFRHLSKKEEKS  107 (112)
T ss_dssp             EEEEEEEGGGTEEEEEEECCSSSCCCS
T ss_pred             eccccccCCCCEEEEEEEeCCcchhcc
Confidence            97 78  89999999999998665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	141
d2ifea_	91	d.68.1.1 (A:) Translation initiation factor IF3, C	3e-21
d1tiga_	88	d.68.1.1 (A:) Translation initiation factor IF3, C	2e-20

>d2ifea_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 91

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: Translation initiation factor IF3, C-terminal domain
family: Translation initiation factor IF3, C-terminal domain
domain: Translation initiation factor IF3, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 79.7 bits (197), Expect = 3e-21
 Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 2/88 (2%)

Query: 31  MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQN 90
           + +KE+K     D+ DY V+L++  +FL++GDK K+ +  +GRE   + I +E++ R ++
Sbjct: 2   IQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKD 61

Query: 91  DVGELASEENK--NFRDRNIFIILVPNK 116
           D+ ELA  E+       R + ++L P K
Sbjct: 62  DLQELAVVESFPTKIEGRQMIMVLAPKK 89

>d1tiga_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 88

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: Translation initiation factor IF3, C-terminal domain
family: Translation initiation factor IF3, C-terminal domain
domain: Translation initiation factor IF3, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 77.4 bits (191), Expect = 2e-20
 Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 31  MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQN 90
           +++KE+++   I++HD++ +L+ ARKFL+ GDKVK  +  KGR    + I   ++ R   
Sbjct: 1   INVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSE 60

Query: 91  DVGELASEENKNFRD-RNIFIILVPNK 116
              ++A  E     D RN+F++L P  
Sbjct: 61  ACADIAVVETAPKMDGRNMFLVLAPKN 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	141
d2ifea_	91	Translation initiation factor IF3, C-terminal doma	100.0
d1tiga_	88	Translation initiation factor IF3, C-terminal doma	100.0
d1i96v_	86	Translation initiation factor IF3, C-terminal doma	100.0

>d2ifea_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: Translation initiation factor IF3, C-terminal domain
family: Translation initiation factor IF3, C-terminal domain
domain: Translation initiation factor IF3, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-36  Score=212.42  Aligned_cols=89  Identities=33%  Similarity=0.644  Sum_probs=85.4

Q ss_pred             CcceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHHHHHHHHHHHHHhcccccccc-c-CCCcce
Q 044576           30 RMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEEN-K-NFRDRN  107 (141)
Q Consensus        30 ~~~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~g~~ll~ri~~~l~~~~~ve~-~-~~eG~~  107 (141)
                      .+++|||+|+|+||+|||++|++||++||++||+|+|+|+|||||++|+|+|.++|++|.++|+++|.+|+ | +++|++
T Consensus         1 iv~vKEirl~~~I~~hDl~~Klk~a~~FL~~G~kVKv~i~frGRE~~~~e~g~~~l~~i~~~l~~v~~ve~~p~k~~Gr~   80 (91)
T d2ifea_           1 VIQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVESFPTKIEGRQ   80 (91)
T ss_dssp             CCEEEEEEECTTCCHHHHTHHHHHHHHHHHTTEEEEEEECCSSCTTCCSSHHHHHHHHHHHHHTTTEEESCCCCCCCSSC
T ss_pred             CeEEEEEEEecCCCcchHHHHHHHHHHHHHCCCeEEEEEEEcCCcccCHHHHHHHHHHHHHHhhhheEEeccCccccCCe
Confidence            36899999999999999999999999999999999999999999999999999999999999999999986 7 799999


Q ss_pred             eEEEEecCcch
Q 044576          108 IFIILVPNKAL  118 (141)
Q Consensus       108 ~~~~l~P~k~~  118 (141)
                      |+|+|+|++++
T Consensus        81 ~~~~l~P~kkK   91 (91)
T d2ifea_          81 MIMVLAPKKKQ   91 (91)
T ss_dssp             CEEEEEECCCC
T ss_pred             EEEEEeeCCCC
Confidence            99999999864

>d1tiga_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: Translation initiation factor IF3, C-terminal domain
family: Translation initiation factor IF3, C-terminal domain
domain: Translation initiation factor IF3, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=5.3e-36  Score=208.42  Aligned_cols=87  Identities=32%  Similarity=0.688  Sum_probs=84.1

Q ss_pred             cceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHHHHHHHHHHHHHhcccccccc-cCCCcceeE
Q 044576           31 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEEN-KNFRDRNIF  109 (141)
Q Consensus        31 ~~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~g~~ll~ri~~~l~~~~~ve~-~~~eG~~~~  109 (141)
                      +++|||+|+|+||+|||++|++||++||++||+|+|+|+|||||++|+|+|.++|++|+++|+++|.+|+ |+++|++|+
T Consensus         1 v~lKEIr~~~~I~~hDl~~K~k~a~~FL~~G~kVKv~v~frGRe~~~~e~g~~~l~~~~~~l~~~~~ve~~pk~eGr~~~   80 (88)
T d1tiga_           1 INVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSEACADIAVVETAPKMDGRNMF   80 (88)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHHHHTTCEEEEEEECCSCCTTHHHHHHHHHHHHHHHTTTTEEEEEEEEEETTEEE
T ss_pred             CceeEEEEecCCCcchHHHHHHHHHHHHhcCCeEEEEEEEcCccccCHHHHHHHHHHHHHHhhhheeeccCccccCCEEE
Confidence            4799999999999999999999999999999999999999999999999999999999999999999997 699999999


Q ss_pred             EEEecCcc
Q 044576          110 IILVPNKA  117 (141)
Q Consensus       110 ~~l~P~k~  117 (141)
                      |+|+|++.
T Consensus        81 ~~l~Pkk~   88 (88)
T d1tiga_          81 LVLAPKND   88 (88)
T ss_dssp             EEEEESCC
T ss_pred             EEEecCCC
Confidence            99999863

>d1i96v_ d.68.1.1 (V:) Translation initiation factor IF3, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: Translation initiation factor IF3, C-terminal domain
family: Translation initiation factor IF3, C-terminal domain
domain: Translation initiation factor IF3, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=8.4e-36  Score=206.59  Aligned_cols=85  Identities=32%  Similarity=0.610  Sum_probs=82.8

Q ss_pred             ceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHHHHHHHHHHHHHhcccccccc-cCCCcceeEE
Q 044576           32 DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEEN-KNFRDRNIFI  110 (141)
Q Consensus        32 ~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~g~~ll~ri~~~l~~~~~ve~-~~~eG~~~~~  110 (141)
                      ++|||+|+|+||+|||++|++||++||++||+|+|+|+|||||++|+|+|.++|++|.++|+++|.+|+ |+++|++|+|
T Consensus         1 evKEIrl~~~I~~hDl~~K~k~a~~FL~~G~kVKv~v~frGRe~~~~e~g~~~l~~~~~~l~d~~~ve~~pk~~Gr~~~~   80 (86)
T d1i96v_           1 EVKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTEDLKDLAVVEMKPEMLGRDMNM   80 (86)
T ss_pred             CcceEEeecCCCcchHHHHHHHHHHHHhcCCeEEEEEEEecccccCHHHHHHHHHHHHHHhhhheEEecCccccCCEEEE
Confidence            489999999999999999999999999999999999999999999999999999999999999999997 7999999999


Q ss_pred             EEecCc
Q 044576          111 ILVPNK  116 (141)
Q Consensus       111 ~l~P~k  116 (141)
                      +|+|++
T Consensus        81 ~l~P~K   86 (86)
T d1i96v_          81 LLAPVK   86 (86)
T ss_pred             EEeeCC
Confidence            999986