Citrus Sinensis ID: 044614

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MHAKEKAMKSEKLKGNFSRPSWATIVLIVTLITIFSLEITKKSVLSPKRVGFSGADGAIFDPDSCAAGLLGDQYLPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVMLGSQ
Secondary Structure (PSIPRED)
ccHHHHHccHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccHHHHHHHHHHHHccccccccEEEEcccEEEEEEEEEEccEEEEEccccEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHccccEEEEccccEEEccEEEcccEEEEEccccEEEEcc
Coil and Loop (DISEMBL)
mhakekamkseklkgnfsrpswATIVLIVTLITIFSLEItkksvlspkrvgfsgadgaifdpdscaagllgdqylperKVAMSIkdfggvgdgttsnTEAFRKAVRYMQgfgdkggaqlnvpeglwltgsfnltsnFTLFLERGAVMLGSQ
Flexible Loop (DISEMBL)
mhakekamkseklkgnfsrpswATIVLIVTLITIFSLEitkksvlspkRVGFSGADGAIFDPDSCAAGLLGDQYLPERKVAMSIKdfggvgdgttSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVMLGSQ
Low Complexity Region (SEG)
MHAKEKAMKSEKLKGNFSRPSWAtivlivtlitiFSLEITKKSVLSPKRVGFSGADGAIFDPDSCAAGLLGDQYLPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVMLGSQ
Disordered region (IsUnstruct)
*******************PSWATIVLIVTLITIFSLEITKKSVLSPKRVGFSGADGAIFDPDSCAAGLLGDQYLPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVM****
Disordered Region (DISOPRED)
***************NFSRPSWATIVLIVTLITIFSLEITKKSVLSPKRVGFSGADGAIFDPDSCAAGLLGDQYLPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVMLGS*
Disordered Region (DISEMBL)
***************NFSRPSWATIVLIVTLITIFSLEITKKSVLSPKRVGFSGADGAIFDPDSCAAGLLGDQYLPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVMLGSQ
Disordered Region (DISPRO)
*************KGNFSRPSWATIVLIVTLITIFSLEITKKSVLSPKRVGFSGADGAIFDPDSCAAGLLGDQYLPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVMLGSQ
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHAKEKAMKSEKLKGNFSRPSWATIVLIVTLITIFSLEITKKSVLSPKRVGFSGADGAIFDPDSCAAGLLGDQYLPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVMLGSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
A7PZL3	491	Probable polygalacturonas	no	no	0.490	0.150	0.621	2e-19
P15922	602	Exo-poly-alpha-D-galactur	N/A	no	0.423	0.106	0.405	8e-06

>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/74 (62%), Positives = 56/74 (75%)

Query: 78  RKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNF 137
           R  + S+ DFGGVGDG T NT+AF+ AV  +  +G +GGAQL VP G WLTGSF+LTS+F
Sbjct: 59  RAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHF 118

Query: 138 TLFLERGAVMLGSQ 151
           TLFL R AV+L SQ
Sbjct: 119 TLFLHRDAVLLASQ 132

Vitis vinifera (taxid: 29760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5

>sp|P15922|PEHX_ERWCH Exo-poly-alpha-D-galacturonosidase OS=Erwinia chrysanthemi GN=pehX PE=1 SV=1

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 5/69 (7%)

Query: 82  MSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFL 141
           ++I  +G  GDGTT NT A +KA+          G +++VP G++ TG+  L S+ TL L
Sbjct: 152 INITQYGAKGDGTTLNTSAIQKAIDAC-----PTGCRIDVPAGVFKTGALWLKSDMTLNL 206

Query: 142 ERGAVMLGS 150
            +GA +LGS
Sbjct: 207 LQGATLLGS 215

Contributes significantly to bacterial utilization of polygalacturonate and the induction of pectate lyase in the presence of extracellular pectic polymers.

Erwinia chrysanthemi (taxid: 556)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
255571381	480	polygalacturonase, putative [Ricinus com	0.900	0.283	0.56	5e-34
4490311	462	putative protein [Arabidopsis thaliana]	0.847	0.277	0.570	6e-34
22329119	475	glycoside hydrolase family 28 protein /	0.847	0.269	0.570	7e-34
225431447	488	PREDICTED: probable polygalacturonase [V	0.933	0.288	0.543	2e-33
296088539	528	unnamed protein product [Vitis vinifera]	0.933	0.267	0.543	2e-33
147776708	479	hypothetical protein VITISV_043959 [Viti	0.887	0.279	0.562	3e-33
356516364	477	PREDICTED: probable polygalacturonase-li	0.860	0.272	0.543	4e-32
297802658	475	glycoside hydrolase family 28 protein [A	0.907	0.288	0.540	5e-32
357464681	775	Germin-like protein [Medicago truncatula	0.933	0.181	0.486	7e-32
224096000	445	predicted protein [Populus trichocarpa]	0.668	0.226	0.638	9e-30

>gi|255571381|ref|XP_002526639.1| polygalacturonase, putative [Ricinus communis] gi|223534031|gb|EEF35751.1| polygalacturonase, putative [Ricinus communis]

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 84/150 (56%), Positives = 103/150 (68%), Gaps = 14/150 (9%)

Query: 10  SEKLKGNFSRPSWATIVLIVTLITIFSLEITKK--------SVLSPKRVGFSGADGAIFD 61
           S  L G  +R SW+ ++L++T++ + S++IT +        S  S +  GFSG      D
Sbjct: 4   SSALMGKLTRLSWSPLILLITVLVLLSIQITTRDFYPICLMSRSSSQPPGFSG------D 57

Query: 62  PDSCAAGLLGDQYLPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNV 121
            +SCA   LG+  LP R+V  SI DFGGVGDG TSNTE FRKAVRYMQ F +KGG+QL V
Sbjct: 58  KESCAVFFLGELLLPRREVVRSIVDFGGVGDGKTSNTETFRKAVRYMQRFAEKGGSQLIV 117

Query: 122 PEGLWLTGSFNLTSNFTLFLERGAVMLGSQ 151
           P G WLTGSFNLTSNFTLFLE GAV+LGSQ
Sbjct: 118 PRGRWLTGSFNLTSNFTLFLEEGAVILGSQ 147

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4490311|emb|CAB38802.1| putative protein [Arabidopsis thaliana] gi|7270292|emb|CAB80061.1| putative protein [Arabidopsis thaliana]

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 98/135 (72%), Gaps = 7/135 (5%)

Query: 17  FSRPSWATIVLIVTLITIFSLEITKKSVLSPKRVGFSGADGAIFDPDSCAAGLLGDQYLP 76
            +RPSWA ++L+ T++ I SL+I+  S L P  +  S  D    DP +C+ G       P
Sbjct: 14  ITRPSWAFLLLVFTVLAILSLQISSNSFL-PLWIPTSQYD----DPVTCS-GFFNHDPFP 67

Query: 77  ERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSN 136
            R + MSI DFGGVGDG TSNT AFR+AVR+++GF  +GGAQLNVPEG WL+GSFNLTSN
Sbjct: 68  NR-IVMSITDFGGVGDGKTSNTAAFRRAVRHLEGFAAEGGAQLNVPEGTWLSGSFNLTSN 126

Query: 137 FTLFLERGAVMLGSQ 151
           FTLFLERGA++LGS+
Sbjct: 127 FTLFLERGALILGSK 141

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329119|ref|NP_195070.2| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] gi|27754320|gb|AAO22613.1| putative polygalacturonase [Arabidopsis thaliana] gi|28393881|gb|AAO42348.1| putative polygalacturonase [Arabidopsis thaliana] gi|332660825|gb|AEE86225.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 98/135 (72%), Gaps = 7/135 (5%)

Query: 17  FSRPSWATIVLIVTLITIFSLEITKKSVLSPKRVGFSGADGAIFDPDSCAAGLLGDQYLP 76
            +RPSWA ++L+ T++ I SL+I+  S L P  +  S  D    DP +C+ G       P
Sbjct: 14  ITRPSWAFLLLVFTVLAILSLQISSNSFL-PLWIPTSQYD----DPVTCS-GFFNHDPFP 67

Query: 77  ERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSN 136
            R + MSI DFGGVGDG TSNT AFR+AVR+++GF  +GGAQLNVPEG WL+GSFNLTSN
Sbjct: 68  NR-IVMSITDFGGVGDGKTSNTAAFRRAVRHLEGFAAEGGAQLNVPEGTWLSGSFNLTSN 126

Query: 137 FTLFLERGAVMLGSQ 151
           FTLFLERGA++LGS+
Sbjct: 127 FTLFLERGALILGSK 141

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431447|ref|XP_002274138.1| PREDICTED: probable polygalacturonase [Vitis vinifera]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/149 (54%), Positives = 102/149 (68%), Gaps = 8/149 (5%)

Query: 8   MKSEKL-----KGNFSRPSWATIVLIVTLITIFSLEITKKSVLSPKRVGFSGADGAIFDP 62
           M SEK       G F+RPSWA ++L+  ++ +   +I  K+V  P+ V   G +  I + 
Sbjct: 1   MDSEKAWFGAAMGGFTRPSWAFLLLVFIVLVVSCFQIGTKTVF-PRWVVLGGGETGISEE 59

Query: 63  DSCAAGLLGDQYLPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVP 122
                GL   + +P RKV MSI+DFGGVGDG TSNTE FR+A+RYMQ FG+ GG+QLNVP
Sbjct: 60  APSCFGLF--REVPPRKVVMSIRDFGGVGDGVTSNTETFRRAIRYMQSFGNIGGSQLNVP 117

Query: 123 EGLWLTGSFNLTSNFTLFLERGAVMLGSQ 151
            G W+TGSFNLTSNFTLFLE GAV+LGSQ
Sbjct: 118 RGRWVTGSFNLTSNFTLFLEEGAVILGSQ 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088539|emb|CBI37530.3| unnamed protein product [Vitis vinifera]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/149 (54%), Positives = 102/149 (68%), Gaps = 8/149 (5%)

Query: 8   MKSEKL-----KGNFSRPSWATIVLIVTLITIFSLEITKKSVLSPKRVGFSGADGAIFDP 62
           M SEK       G F+RPSWA ++L+  ++ +   +I  K+V  P+ V   G +  I + 
Sbjct: 1   MDSEKAWFGAAMGGFTRPSWAFLLLVFIVLVVSCFQIGTKTVF-PRWVVLGGGETGISEE 59

Query: 63  DSCAAGLLGDQYLPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVP 122
                GL   + +P RKV MSI+DFGGVGDG TSNTE FR+A+RYMQ FG+ GG+QLNVP
Sbjct: 60  APSCFGLF--REVPPRKVVMSIRDFGGVGDGVTSNTETFRRAIRYMQSFGNIGGSQLNVP 117

Query: 123 EGLWLTGSFNLTSNFTLFLERGAVMLGSQ 151
            G W+TGSFNLTSNFTLFLE GAV+LGSQ
Sbjct: 118 RGRWVTGSFNLTSNFTLFLEEGAVILGSQ 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776708|emb|CAN76963.1| hypothetical protein VITISV_043959 [Vitis vinifera]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/137 (56%), Positives = 98/137 (71%), Gaps = 3/137 (2%)

Query: 15  GNFSRPSWATIVLIVTLITIFSLEITKKSVLSPKRVGFSGADGAIFDPDSCAAGLLGDQY 74
           G F+RPSWA ++L+  ++ +   +I  K+V  P+ V   G +  I +      GL   + 
Sbjct: 2   GGFTRPSWAFLLLVFIVLVVSCFQIGTKTVF-PRWVVLGGGETGISEEAPSCFGLF--RE 58

Query: 75  LPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLT 134
           +P RKV MSI+DFGGVGDG TSNTE FR+A+RYMQ FG+ GG+QLNVP G W+TGSFNLT
Sbjct: 59  VPPRKVVMSIRDFGGVGDGVTSNTETFRRAIRYMQSFGNIGGSQLNVPRGRWVTGSFNLT 118

Query: 135 SNFTLFLERGAVMLGSQ 151
           SNFTLFLE GAV+LGSQ
Sbjct: 119 SNFTLFLEEGAVILGSQ 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516364|ref|XP_003526865.1| PREDICTED: probable polygalacturonase-like [Glycine max]

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 75/138 (54%), Positives = 93/138 (67%), Gaps = 8/138 (5%)

Query: 15  GNFSRPSWATIVLIVTLITIFSLEITKKSVLSPKRVGFSGADGAIFDPDSC-AAGLLGDQ 73
           G  +RPSWA I L+ TL+T  +L +  + V        SG     +   +   AG   D 
Sbjct: 14  GTCTRPSWALIFLLFTLVTFLTLHLPARPVWF-----LSGLQPGPYPTTTPTCAGFFRD- 67

Query: 74  YLPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL 133
            +P RKV +SI+DFGGVGDG TSNTE+FR+A+RYMQ F ++GGAQLN+P G WLTGSFNL
Sbjct: 68  -VPPRKVVLSIEDFGGVGDGKTSNTESFRRAIRYMQRFQNRGGAQLNIPTGTWLTGSFNL 126

Query: 134 TSNFTLFLERGAVMLGSQ 151
           TSNFTLFL  GAV+L SQ
Sbjct: 127 TSNFTLFLHHGAVILASQ 144

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802658|ref|XP_002869213.1| glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata] gi|297315049|gb|EFH45472.1| glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata]

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 102/148 (68%), Gaps = 11/148 (7%)

Query: 8   MKSEK----LKGNFSRPSWATIVLIVTLITIFSLEITKKSVLSPKRVGFSGADGAIFDPD 63
           M+SEK    +    +RPS A ++L+ T + I SL+I+  S + P  +  S       DP 
Sbjct: 1   MESEKNPTTVLSAITRPSCAFLLLVFTALAILSLQISSNSFI-PIWIPTS----QYHDPV 55

Query: 64  SCAAGLLGDQYLPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPE 123
           +C+ G       P RKV MSI DFGGVGDG TSNTEAFR+AVR+++GF  +GGAQLNVP 
Sbjct: 56  TCS-GFFNHDPFPNRKV-MSITDFGGVGDGKTSNTEAFRRAVRHLEGFAAEGGAQLNVPM 113

Query: 124 GLWLTGSFNLTSNFTLFLERGAVMLGSQ 151
           G WL+GSFNLTSNFTLFL+RGAV+LGS+
Sbjct: 114 GTWLSGSFNLTSNFTLFLQRGAVILGSK 141

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464681|ref|XP_003602622.1| Germin-like protein [Medicago truncatula] gi|355491670|gb|AES72873.1| Germin-like protein [Medicago truncatula]

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 72/148 (48%), Positives = 102/148 (68%), Gaps = 7/148 (4%)

Query: 8   MKSEK----LKGNFSRPSWATIVLIVTLITIFSLEITKKSVLSPKRVGFSGADGAIFDPD 63
           M+SEK    + G++++PS + + L  T +TI SL+ + +S+     +       ++ DP 
Sbjct: 1   MESEKTTLMILGSYTKPSCSILFLFFTFLTILSLQFSTRSLFPLSILLSQQPQPSLVDPT 60

Query: 64  SCAAGLLGDQYLPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPE 123
           +C+ G   +  +P RK+  SI DFGGVGDG TSNT++F++A+RYMQ F  KGG+QLN+P 
Sbjct: 61  TCS-GFFNN--VPPRKIIKSIVDFGGVGDGKTSNTQSFQRAIRYMQRFRGKGGSQLNIPN 117

Query: 124 GLWLTGSFNLTSNFTLFLERGAVMLGSQ 151
           G WLTGSFNLTS+FTLFL  GAV+LGSQ
Sbjct: 118 GTWLTGSFNLTSDFTLFLHHGAVVLGSQ 145

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096000|ref|XP_002310517.1| predicted protein [Populus trichocarpa] gi|222853420|gb|EEE90967.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 67/105 (63%), Positives = 79/105 (75%), Gaps = 4/105 (3%)

Query: 49  RVGFSGAD--GAIFDPDSCAAGLLGDQYLPERKVAMSIKDFGGVGDGTTSNTEAFRKAVR 106
           ++ FS     G   D  +   G  G+  LPERK  MSI++FGGVGDG TSNTE FRKA+R
Sbjct: 2   KIAFSSTSKTGVSADTRTSCVGFFGE--LPERKAVMSIREFGGVGDGKTSNTETFRKAIR 59

Query: 107 YMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVMLGSQ 151
           Y+Q FG+ GGAQLNVP+G W+TGSFNLTSNFTLFLE GAV+LGSQ
Sbjct: 60  YLQRFGESGGAQLNVPKGRWVTGSFNLTSNFTLFLEEGAVILGSQ 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
TAIR|locus:2119156	475	AT4G33440 [Arabidopsis thalian	0.841	0.267	0.552	4.2e-31
TAIR|locus:2083383	446	AT3G06770 [Arabidopsis thalian	0.543	0.183	0.621	1.6e-20
TAIR|locus:504954979	449	AT5G49215 [Arabidopsis thalian	0.496	0.167	0.653	3.6e-20
TAIR|locus:2086740	455	AT3G16850 [Arabidopsis thalian	0.503	0.167	0.631	1.8e-19
TAIR|locus:2101313	469	AT3G48950 [Arabidopsis thalian	0.490	0.157	0.608	1.9e-18
TAIR|locus:2117964	495	AT4G23500 [Arabidopsis thalian	0.490	0.149	0.608	9.9e-18
TAIR|locus:2098038	471	AT3G62110 [Arabidopsis thalian	0.635	0.203	0.474	1.1e-17
TAIR|locus:2082787	476	AT3G61490 [Arabidopsis thalian	0.490	0.155	0.567	1.2e-17
TAIR|locus:2061396	477	AT2G23900 [Arabidopsis thalian	0.490	0.155	0.554	2.4e-16
TAIR|locus:2202170	506	AT1G19170 [Arabidopsis thalian	0.509	0.152	0.556	1.2e-15

TAIR|locus:2119156 AT4G33440 [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 74/134 (55%), Positives = 90/134 (67%)

Query:    18 SRPSWAXXXXXXXXXXXFSLEITKKSVLSPKRVGFSGADGAIFDPDSCAAGLLGDQYLPE 77
             +RPSWA            SL+I+  S L P  +  S  D    DP +C+ G       P 
Sbjct:    15 TRPSWAFLLLVFTVLAILSLQISSNSFL-PLWIPTSQYD----DPVTCS-GFFNHDPFPN 68

Query:    78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNF 137
             R + MSI DFGGVGDG TSNT AFR+AVR+++GF  +GGAQLNVPEG WL+GSFNLTSNF
Sbjct:    69 R-IVMSITDFGGVGDGKTSNTAAFRRAVRHLEGFAAEGGAQLNVPEGTWLSGSFNLTSNF 127

Query:   138 TLFLERGAVMLGSQ 151
             TLFLERGA++LGS+
Sbjct:   128 TLFLERGALILGSK 141

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2083383 AT3G06770 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 1.6e-20, P = 1.6e-20
 Identities = 51/82 (62%), Positives = 60/82 (73%)

Query:    70 LGDQYLPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTG 129
             LG + L  R  ++SI DFG VGDG T NT AF+ AV Y+  F DKGGAQL VP G WLTG
Sbjct:    31 LGRRSLSTRPHSVSITDFGAVGDGKTLNTLAFQNAVFYLMSFADKGGAQLYVPPGHWLTG 90

Query:   130 SFNLTSNFTLFLERGAVMLGSQ 151
             SF+LTS+ TLFLE GAV++ SQ
Sbjct:    91 SFSLTSHLTLFLENGAVIVASQ 112

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:504954979 AT5G49215 [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 3.6e-20, P = 3.6e-20
 Identities = 49/75 (65%), Positives = 57/75 (76%)

Query:    77 ERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSN 136
             ER  ++ I DFG VGDG T NT AF+ AV Y++ F DKGGAQL VP G WLTGSFNLTS+
Sbjct:    38 ERPHSVKITDFGAVGDGKTLNTLAFQNAVFYLKSFADKGGAQLYVPPGRWLTGSFNLTSH 97

Query:   137 FTLFLERGAVMLGSQ 151
              TLFLE+ AV+L SQ
Sbjct:    98 LTLFLEKDAVILASQ 112

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2086740 AT3G16850 [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 48/76 (63%), Positives = 57/76 (75%)

Query:    75 LPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLT 134
             L  R  ++SI +FG VGDG T NT AF+ AV Y++ F DKGGAQL VP G WLTGSFNLT
Sbjct:    33 LDPRPHSVSILEFGAVGDGKTLNTIAFQNAVFYLKSFADKGGAQLYVPPGKWLTGSFNLT 92

Query:   135 SNFTLFLERGAVMLGS 150
             S+ TLFLE+GA +L S
Sbjct:    93 SHLTLFLEKGATILAS 108

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2101313 AT3G48950 [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 1.9e-18, P = 1.9e-18
 Identities = 45/74 (60%), Positives = 54/74 (72%)

Query:    78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNF 137
             RK +  + DFG VGDG TSNT+AFR A+  +      GGAQL VP G WLTGSFNLTS+F
Sbjct:    41 RKHSAILTDFGAVGDGKTSNTKAFRNAISKLSQMATDGGAQLVVPPGKWLTGSFNLTSHF 100

Query:   138 TLFLERGAVMLGSQ 151
             TLF++RGA +L SQ
Sbjct:   101 TLFIQRGATILASQ 114

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2117964 AT4G23500 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 9.9e-18, P = 9.9e-18
 Identities = 45/74 (60%), Positives = 53/74 (71%)

Query:    78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNF 137
             R  + S+ +FG VGDG TSNT AFR AV  +  F D GG+ L VP G WLTG+FNLTS+F
Sbjct:    64 RAYSASLDEFGAVGDGVTSNTAAFRDAVSQLSRFADYGGSLLFVPAGRWLTGNFNLTSHF 123

Query:   138 TLFLERGAVMLGSQ 151
             TLFL R AV+L SQ
Sbjct:   124 TLFLHRDAVILASQ 137

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0005618 "cell wall" evidence=IDA

TAIR|locus:2098038 AT3G62110 [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 47/99 (47%), Positives = 65/99 (65%)

Query:    52 FSGADGAIFDPDSCAAGLLGDQYLPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGF 111
             F GA  ++ +   C    L   + P    ++SI +FG VGDG T NT+AF+ A+ Y+  F
Sbjct:    16 FYGAWCSVGESLHCEYSNLASLHRPH---SVSITEFGAVGDGVTLNTKAFQNALFYLNSF 72

Query:   112 GDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVMLGS 150
              DKGGA+L VP G WLTGSF+L S+ TL+L++GA +LGS
Sbjct:    73 SDKGGAKLFVPAGQWLTGSFDLISHLTLWLDKGATILGS 111

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2082787 AT3G61490 [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 42/74 (56%), Positives = 56/74 (75%)

Query:    78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNF 137
             R  + SI ++GGVGDG T NT+AF+ AV ++  +  +GGAQL VP G WLTGSFNLTS+F
Sbjct:    41 RSHSASITEYGGVGDGKTLNTKAFQSAVDHLSQYSSEGGAQLFVPAGKWLTGSFNLTSHF 100

Query:   138 TLFLERGAVMLGSQ 151
             TLFL + A++L +Q
Sbjct:   101 TLFLHKDAILLAAQ 114

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2061396 AT2G23900 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 41/74 (55%), Positives = 53/74 (71%)

Query:    78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNF 137
             RK    + +FG VGDG TSNT+AF++A+  +      GG QL VP G WLTGSFNLTS+F
Sbjct:    52 RKHTAVLTEFGAVGDGKTSNTKAFKEAITKLAPKAADGGVQLIVPPGKWLTGSFNLTSHF 111

Query:   138 TLFLERGAVMLGSQ 151
             TLF+++GA +L SQ
Sbjct:   112 TLFIQKGATILASQ 125

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2202170 AT1G19170 [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 44/79 (55%), Positives = 51/79 (64%)

Query:    73 QYLPE-RKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFG-DKGGAQLNVPEGLWLTGS 130
             Q +P  R V   +KDFGGVGDG T NTEAF +AV  +   G   GG QLNVP G WLT  
Sbjct:    77 QPIPRLRPVVFDLKDFGGVGDGFTLNTEAFERAVISISKLGGSSGGGQLNVPPGRWLTAP 136

Query:   131 FNLTSNFTLFLERGAVMLG 149
             FNLTS+ TLFL   + +LG
Sbjct:   137 FNLTSHMTLFLAEDSEILG 155

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	151
COG5434	542	COG5434, PGU1, Endopygalactorunase [Cell envelope	5e-10
pfam12708	222	pfam12708, Pectate_lyase_3, Pectate lyase superfam	2e-05

>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane]

 Score = 56.3 bits (136), Expect = 5e-10
 Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 81  AMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLF 140
           A S+ D G VGDG T NT A + A+         GG  + +P G +L+G   L SN TL 
Sbjct: 82  AFSVSDDGAVGDGATDNTAAIQAAIDACAS---AGGGTVLLPAGTYLSGPLFLKSNVTLH 138

Query: 141 LERGAVMLGS 150
           L  GA +L S
Sbjct: 139 LAEGATLLAS 148

Length = 542

>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 83  SIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWL-TGSFNLTSNFTL 139
           ++KDFG  GDG T +T A +KA+         GGA +  P G +L +    L S  TL
Sbjct: 3   NVKDFGAKGDGVTDDTAAIQKAIC---ASATTGGAVVYFPPGTYLVSSPIILYSGTTL 57

This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
PLN02155	394	polygalacturonase	99.7
PLN02793	443	Probable polygalacturonase	99.67
COG5434	542	PGU1 Endopygalactorunase [Cell envelope biogenesis	99.66
PF12708	225	Pectate_lyase_3: Pectate lyase superfamily protein	99.65
PLN02188	404	polygalacturonase/glycoside hydrolase family prote	99.65
PLN02218	431	polygalacturonase ADPG	99.63
PLN03010	409	polygalacturonase	99.6
PLN03003	456	Probable polygalacturonase At3g15720	99.42
TIGR03808	455	RR_plus_rpt_1 twin-arg-translocated uncharacterize	99.4
PF12218	67	End_N_terminal: N terminal extension of bacterioph	95.52
PLN02480	343	Probable pectinesterase	92.82
PF07602	246	DUF1565: Protein of unknown function (DUF1565); In	89.1
PF03718	582	Glyco_hydro_49: Glycosyl hydrolase family 49; Inte	88.42
PLN02304	379	probable pectinesterase	84.37
PLN02432	293	putative pectinesterase	82.03
PLN02176	340	putative pectinesterase	81.53
PF14592	425	Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF	80.33

>PLN02155 polygalacturonase

Probab=99.70  E-value=3.3e-17  Score=144.60  Aligned_cols=68  Identities=26%  Similarity=0.409  Sum_probs=60.8

Q ss_pred             CCeeEEeeecCccCCCcchhHHHHHHHHH-HhHcCCCCCCcEEEecCCeEEEeeeEE----CCCeEEEEcCCcEEEcC
Q 044614           78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVR-YMQGFGDKGGAQLNVPEGLWLTGSFNL----TSNFTLFLERGAVMLGS  150 (151)
Q Consensus        78 ~~~~~nV~dFGA~gDG~tDdT~AfQ~AId-aa~~~~~~GGg~V~VPaGtYltg~L~L----kSnvtL~l~~GAvIlgS  150 (151)
                      ....+||+||||+|||++|||+|||+||+ +|.+   .||++|+||+|+|++++|.|    ||+++|+|+ | +|+++
T Consensus        24 ~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~---~gGg~v~vP~G~yl~g~i~l~gpcksnv~l~l~-G-~l~~~   96 (394)
T PLN02155         24 ASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGS---ASSATVVVPTGTFLLKVITFGGPCKSKITFQVA-G-TVVAP   96 (394)
T ss_pred             CCcEEEhhhcCcCCCCccccHHHHHHHHHHHccc---CCCeEEEECCCcEEEEEEEEcccCCCCceEEEe-e-EEECc
Confidence            34689999999999999999999999996 7766   78999999999999999999    899999998 7 45443

>PLN02793 Probable polygalacturonase

Probab=99.67  E-value=1.8e-16  Score=141.68  Aligned_cols=68  Identities=26%  Similarity=0.552  Sum_probs=61.6

Q ss_pred             CeeEEeeecCccCCCcchhHHHHHHHHH-HhHcCCCCCCcEEEecCC-eEEEeeeEE----CCCeEEEEcCCcEEEcCC
Q 044614           79 KVAMSIKDFGGVGDGTTSNTEAFRKAVR-YMQGFGDKGGAQLNVPEG-LWLTGSFNL----TSNFTLFLERGAVMLGSQ  151 (151)
Q Consensus        79 ~~~~nV~dFGA~gDG~tDdT~AfQ~AId-aa~~~~~~GGg~V~VPaG-tYltg~L~L----kSnvtL~l~~GAvIlgS~  151 (151)
                      +.++||+||||+|||.+|||+|||+||+ +|.+   .||++|+||+| +|++++|+|    +|+++|+++  ++|+++.
T Consensus        50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~---~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~--g~l~~~~  123 (443)
T PLN02793         50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSS---KVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIAPK  123 (443)
T ss_pred             ceEEEhhhcccCCCCCCccHHHHHHHHHHHhcc---CCCCEEEECCCceEEEEEEEECCccCCCeEEEEE--EEEEccC
Confidence            4799999999999999999999999999 5765   68999999999 599999999    899999998  6887763

>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]

Probab=99.66  E-value=1.3e-16  Score=145.91  Aligned_cols=72  Identities=40%  Similarity=0.635  Sum_probs=68.1

Q ss_pred             CCCCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEECCCeEEEEcCCcEEEcC
Q 044614           76 PERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVMLGS  150 (151)
Q Consensus        76 ~~~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~LkSnvtL~l~~GAvIlgS  150 (151)
                      ......++|.+|||++||.+||+.|||+||++|.+   .+|++|+||+|+|++++|+|||+++|++++||||+++
T Consensus        77 ~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~ca~---a~Gg~V~lPaGtylsg~l~LKS~~~L~l~egatl~~~  148 (542)
T COG5434          77 AATDTAFSVSDDGAVGDGATDNTAAIQAAIDACAS---AGGGTVLLPAGTYLSGPLFLKSNVTLHLAEGATLLAS  148 (542)
T ss_pred             ccccceeeeccccccccCCccCHHHHHHHHHhhhh---hcCceEEECCceeEeeeEEEecccEEEecCCceeeCC
Confidence            44567899999999999999999999999999987   7999999999999999999999999999999999987

>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A

Probab=99.65  E-value=1.7e-16  Score=122.74  Aligned_cols=61  Identities=31%  Similarity=0.512  Sum_probs=50.5

Q ss_pred             eEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEee-eEECCCeEEEEcCC
Q 044614           81 AMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGS-FNLTSNFTLFLERG  144 (151)
Q Consensus        81 ~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~-L~LkSnvtL~l~~G  144 (151)
                      ++||+||||++||++|||.|||+||+++..   .++++||||+|+|++.. +.++++++|+.+.+
T Consensus         1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~~---~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~   62 (225)
T PF12708_consen    1 FINVTDFGAKGDGVTDDTAAIQAAIDAAAA---AGGGVVYFPPGTYRISGTLIIPSNVTLRGAGG   62 (225)
T ss_dssp             EEEGGGGT--TEEEEE-HHHHHHHHHHHCS---TTSEEEEE-SEEEEESS-EEE-TTEEEEESST
T ss_pred             CcceeecCcCCCCChhHHHHHHHhhhhccc---CCCeEEEEcCcEEEEeCCeEcCCCeEEEccCC
Confidence            489999999999999999999999976665   68999999999999655 99999999999876

...

>PLN02188 polygalacturonase/glycoside hydrolase family protein

Probab=99.65  E-value=3.5e-16  Score=138.42  Aligned_cols=65  Identities=22%  Similarity=0.473  Sum_probs=56.2

Q ss_pred             CCCeeEEeeecCccCCCcchhHHHHHHHHH-HhHcCCCCCCcEEEecCCeEEEeeeEEC------CCeEEEEcCCcEEEc
Q 044614           77 ERKVAMSIKDFGGVGDGTTSNTEAFRKAVR-YMQGFGDKGGAQLNVPEGLWLTGSFNLT------SNFTLFLERGAVMLG  149 (151)
Q Consensus        77 ~~~~~~nV~dFGA~gDG~tDdT~AfQ~AId-aa~~~~~~GGg~V~VPaGtYltg~L~Lk------SnvtL~l~~GAvIlg  149 (151)
                      .+..++||+||||+|||.+|||+|||+||+ +|.+   .||++|+||+|+|++++++|+      ++++|      +|++
T Consensus        32 ~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~---~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l------~L~~  102 (404)
T PLN02188         32 SSTFLFDVRSFGARANGHTDDSKAFMAAWKAACAS---TGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF------TLKA  102 (404)
T ss_pred             CCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhcc---CCCeEEEECCCeEEEEeEEeCCCcCcceeEEE------EEEc
Confidence            355799999999999999999999999997 5665   688999999999999999996      56666      6666


Q ss_pred             C
Q 044614          150 S  150 (151)
Q Consensus       150 S  150 (151)
                      +
T Consensus       103 s  103 (404)
T PLN02188        103 A  103 (404)
T ss_pred             C
Confidence            5

>PLN02218 polygalacturonase ADPG

Probab=99.63  E-value=8e-16  Score=137.18  Aligned_cols=69  Identities=36%  Similarity=0.508  Sum_probs=61.1

Q ss_pred             CCeeEEeeecCccCCCcchhHHHHHHHHH-HhHcCCCCCCcEEEecCC-eEEEeeeEEC----CCeEEEEcCCcEEEcCC
Q 044614           78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVR-YMQGFGDKGGAQLNVPEG-LWLTGSFNLT----SNFTLFLERGAVMLGSQ  151 (151)
Q Consensus        78 ~~~~~nV~dFGA~gDG~tDdT~AfQ~AId-aa~~~~~~GGg~V~VPaG-tYltg~L~Lk----SnvtL~l~~GAvIlgS~  151 (151)
                      ++.++||+||||+|||++|||+|||+||+ +|.+   .|+++|+||+| +|+++++.|+    ++++|++  +++|++|+
T Consensus        64 ~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~---~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l--~g~L~~s~  138 (431)
T PLN02218         64 TPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSS---NGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQI--FGTLSASQ  138 (431)
T ss_pred             CCcEEEeeecccCCCCCcccHHHHHHHHHHhhhc---CCCcEEEECCCCeEEEeeeEecCccCCceEEEE--EEEEEeCC
Confidence            46799999999999999999999999995 6766   68889999999 6999999994    7888887  58999874

>PLN03010 polygalacturonase

Probab=99.60  E-value=2.5e-15  Score=133.44  Aligned_cols=68  Identities=22%  Similarity=0.420  Sum_probs=58.4

Q ss_pred             CCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCC--CcEEEecCC-eEEEeeeEECC-----CeEEEEcCCcEEEc
Q 044614           78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKG--GAQLNVPEG-LWLTGSFNLTS-----NFTLFLERGAVMLG  149 (151)
Q Consensus        78 ~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~G--Gg~V~VPaG-tYltg~L~LkS-----nvtL~l~~GAvIlg  149 (151)
                      ...++||+||||+|||++|||+|||+||++++.   .+  +++|+||+| +|++++|.|++     +++|+++  ++|++
T Consensus        43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~---~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~--G~l~~  117 (409)
T PLN03010         43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCG---GEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLD--GIIVA  117 (409)
T ss_pred             CCcEEeeeecCcCCCCCcccHHHHHHHHHHHcc---CCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEc--cEEEc
Confidence            346899999999999999999999999987554   23  379999999 79999999984     7999998  46777


Q ss_pred             C
Q 044614          150 S  150 (151)
Q Consensus       150 S  150 (151)
                      +
T Consensus       118 ~  118 (409)
T PLN03010        118 P  118 (409)
T ss_pred             c
Confidence            6

>PLN03003 Probable polygalacturonase At3g15720

Probab=99.42  E-value=3.2e-13  Score=121.69  Aligned_cols=55  Identities=33%  Similarity=0.615  Sum_probs=49.5

Q ss_pred             CCeeEEeeecCccCCCcchhHHHHHHHHHH-hHcCCCCCCcEEEecCC-eEEEeeeEECC
Q 044614           78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVRY-MQGFGDKGGAQLNVPEG-LWLTGSFNLTS  135 (151)
Q Consensus        78 ~~~~~nV~dFGA~gDG~tDdT~AfQ~AIda-a~~~~~~GGg~V~VPaG-tYltg~L~LkS  135 (151)
                      .+.++||+||||+|||++|||+|||+||++ |.+   .||++|+||+| +|+++++.|++
T Consensus        20 ~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~---~ggg~v~VP~G~~yl~~pl~l~g   76 (456)
T PLN03003         20 SSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSG---TGDGQFVVPAGMTFMLQPLKFQG   76 (456)
T ss_pred             eeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhc---cCCCEEEECCCceEEeeeeEeCC
Confidence            456899999999999999999999999998 554   68999999999 58899999965

>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein

Probab=99.40  E-value=4.6e-13  Score=120.58  Aligned_cols=67  Identities=22%  Similarity=0.355  Sum_probs=61.2

Q ss_pred             CCCCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEECCCeEEEEcCCcE
Q 044614           76 PERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAV  146 (151)
Q Consensus        76 ~~~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~LkSnvtL~l~~GAv  146 (151)
                      .++...+|+.+|||++||.+|+|+|||+||++|.+    ++.+|.+|+|+|++|+|.|+++++|..++||+
T Consensus        32 ~~p~r~~dv~~fGa~~dG~td~T~ALQaAIdaAa~----gG~tV~Lp~G~Y~~G~L~L~spltL~G~~gAt   98 (455)
T TIGR03808        32 LTSTLGRDATQYGVRPNSPDDQTRALQRAIDEAAR----AQTPLALPPGVYRTGPLRLPSGAQLIGVRGAT   98 (455)
T ss_pred             CCCccCCCHHHcCcCCCCcchHHHHHHHHHHHhhc----CCCEEEECCCceecccEEECCCcEEEecCCcE
Confidence            34455699999999999999999999999999875    56899999999999999999999999999996

Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.

>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length

Probab=95.52  E-value=0.018  Score=40.18  Aligned_cols=38  Identities=24%  Similarity=0.250  Sum_probs=21.8

Q ss_pred             ccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCC-eEEEeeeE
Q 044614           89 GVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEG-LWLTGSFN  132 (151)
Q Consensus        89 A~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaG-tYltg~L~  132 (151)
                      |+|||+||||.||.+++++..      .+.++=-.| ||.+.++-
T Consensus         1 A~GDGvtdDt~A~~a~l~a~~------~g~~IDg~GlTykVs~lP   39 (67)
T PF12218_consen    1 AKGDGVTDDTAAITAALEASP------VGRKIDGAGLTYKVSSLP   39 (67)
T ss_dssp             ---CCCCE-HHHHHHHHHHS-------TTS-EE-TT-EEEESS--
T ss_pred             CCCccccCcHHHHHHHHhccC------CCeEEecCCceEEEeeCc
Confidence            689999999999999998643      333444455 78766543

The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.

>PLN02480 Probable pectinesterase

Probab=92.82  E-value=0.87  Score=40.36  Aligned_cols=51  Identities=4%  Similarity=0.018  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEc
Q 044614           97 NTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLG  149 (151)
Q Consensus        97 dT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlg  149 (151)
                      |=.-+|+||+++... .....+|+|.+|+|. +.+.+   +.+++|..+.  +++|.+
T Consensus        59 ~f~TIQ~AIdaap~~-~~~~~~I~Ik~GvY~-E~V~I~~~kp~ItL~G~g~~~TvI~~  114 (343)
T PLN02480         59 DFTSVQSAIDAVPVG-NSEWIIVHLRKGVYR-EKVHIPENKPFIFMRGNGKGRTSIVW  114 (343)
T ss_pred             CcccHHHHHhhCccC-CCceEEEEEcCcEEE-EEEEECCCCceEEEEecCCCCeEEEc
Confidence            456699999998751 112346889999999 77777   5678998775  566654

>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans

Probab=89.10  E-value=0.69  Score=39.31  Aligned_cols=40  Identities=20%  Similarity=0.272  Sum_probs=32.9

Q ss_pred             HHHHHHHHHhHcCCCCCCcEEEecCCeEE--E---eeeEECCCeEEEEcC
Q 044614           99 EAFRKAVRYMQGFGDKGGAQLNVPEGLWL--T---GSFNLTSNFTLFLER  143 (151)
Q Consensus        99 ~AfQ~AIdaa~~~~~~GGg~V~VPaGtYl--t---g~L~LkSnvtL~l~~  143 (151)
                      +-|++|++.+..     |.+|+|-+|+|.  +   -||.++++++|+.++
T Consensus        16 ~Ti~~A~~~a~~-----g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~   60 (246)
T PF07602_consen   16 KTITKALQAAQP-----GDTIQLAPGTYSEATGETFPIIIKPGVTLIGNE   60 (246)
T ss_pred             HHHHHHHHhCCC-----CCEEEECCceeccccCCcccEEecCCeEEeecc
Confidence            458899988765     789999999997  3   378899999998763

Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).

>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3

Probab=88.42  E-value=0.68  Score=43.79  Aligned_cols=35  Identities=31%  Similarity=0.496  Sum_probs=27.0

Q ss_pred             CcEEEecCCeEEEee---eEECCCe-EEEEcCCcEEEcC
Q 044614          116 GAQLNVPEGLWLTGS---FNLTSNF-TLFLERGAVMLGS  150 (151)
Q Consensus       116 Gg~V~VPaGtYltg~---L~LkSnv-tL~l~~GAvIlgS  150 (151)
                      ..+|||++|+|-.|.   +.|++|+ ++++++||.+.|+
T Consensus       232 ~~~lYF~PGVy~ig~~~~l~L~sn~~~VYlApGAyVkGA  270 (582)
T PF03718_consen  232 KDTLYFKPGVYWIGSDYHLRLPSNTKWVYLAPGAYVKGA  270 (582)
T ss_dssp             SSEEEE-SEEEEEBCTC-EEE-TT--EEEE-TTEEEES-
T ss_pred             cceEEeCCceEEeCCCccEEECCCccEEEEcCCcEEEEE
Confidence            569999999998776   9999986 9999999999875

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.

>PLN02304 probable pectinesterase

Probab=84.37  E-value=3.1  Score=37.55  Aligned_cols=49  Identities=12%  Similarity=0.220  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEE
Q 044614           98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVML  148 (151)
Q Consensus        98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIl  148 (151)
                      =.-+|+||+++... ....-+|+|-+|+|. ..+.+   +++++|..+.  ..+|.
T Consensus        87 f~TIQ~AIdavP~~-~~~r~vI~Ik~GvY~-EkV~Ip~~K~~Itl~G~g~~~TiIt  140 (379)
T PLN02304         87 FTTVQSAVDAVGNF-SQKRNVIWINSGIYY-EKVTVPKTKPNITFQGQGFDSTAIA  140 (379)
T ss_pred             ccCHHHHHhhCccc-CCCcEEEEEeCeEeE-EEEEECCCCCcEEEEecCCCCcEEE
Confidence            44599999998651 123568999999997 44555   6789998874  34444

>PLN02432 putative pectinesterase

Probab=82.03  E-value=4.6  Score=35.13  Aligned_cols=49  Identities=10%  Similarity=0.091  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEE
Q 044614           98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVML  148 (151)
Q Consensus        98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIl  148 (151)
                      =.-+|+||+++... ....-+|+|.+|+|. ..+.+   +.+++|..+.  +.+|.
T Consensus        23 f~TIq~Aida~p~~-~~~~~~I~I~~G~Y~-E~V~ip~~k~~itl~G~~~~~TvI~   76 (293)
T PLN02432         23 FRKIQDAIDAVPSN-NSQLVFIWVKPGIYR-EKVVVPADKPFITLSGTQASNTIIT   76 (293)
T ss_pred             ccCHHHHHhhcccc-CCceEEEEEeCceeE-EEEEEeccCceEEEEEcCCCCeEEE
Confidence            45699999998761 123468999999995 44555   6788988873  44443

>PLN02176 putative pectinesterase

Probab=81.53  E-value=5  Score=35.66  Aligned_cols=44  Identities=5%  Similarity=0.097  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC
Q 044614           98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER  143 (151)
Q Consensus        98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~  143 (151)
                      =.-+|+||+++... ....-+|+|.+|+|. ..+.+   +.+++|..+.
T Consensus        51 f~TIq~AIdavP~~-~~~~~~I~Ik~GvY~-EkV~Ip~~k~~vtl~G~g   97 (340)
T PLN02176         51 FKTVQSAIDSIPLQ-NQNWIRILIQNGIYR-EKVTIPKEKGYIYMQGKG   97 (340)
T ss_pred             ccCHHHHHhhchhc-CCceEEEEECCcEEE-EEEEECCCCccEEEEEcC
Confidence            55699999998661 122457999999998 34555   5689998873

>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A

Probab=80.33  E-value=4.2  Score=37.32  Aligned_cols=42  Identities=17%  Similarity=0.261  Sum_probs=28.1

Q ss_pred             hHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE-CCC-----eEEEEcC
Q 044614           97 NTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL-TSN-----FTLFLER  143 (151)
Q Consensus        97 dT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L-kSn-----vtL~l~~  143 (151)
                      +.++||+|++.+..     |-+|++..|+|....|.+ .++     |||.-+.
T Consensus         3 s~~~lq~Ai~~a~p-----GD~I~L~~Gty~~~~i~~~~~GT~~~PItl~Ae~   50 (425)
T PF14592_consen    3 SVAELQSAIDNAKP-----GDTIVLADGTYKDVEIVFKGSGTAAKPITLRAEN   50 (425)
T ss_dssp             SHHHHHHHHHH--T-----T-EEEE-SEEEET-EEEE-S--BTTB-EEEEESS
T ss_pred             CHHHHHHHHHhCCC-----CCEEEECCceeecceEEEEecccCCCCEEEEecC
Confidence            56889999998876     889999999999545666 233     7777763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	151
3jur_A	448	The Crystal Structure Of A Hyperthermoactive Exopol		4e-08
2uve_A	608	Structure Of Yersinia Enterocolitica Family 28 Exop		2e-07

>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 5/68 (7%)
Query: 75  LPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLT 134
           +P+R+V  ++ DFG  GDG T  +E+F++A+   +    +GG +L VPEG++LTG  +L 
Sbjct: 23  IPDREV--NLLDFGARGDGRTDCSESFKRAI---EELSKQGGGRLIVPEGVFLTGPIHLK 77
Query: 135 SNFTLFLE 142
           SN  L ++
Sbjct: 78  SNIELHVK 85

>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 5/70 (7%)
Query: 82  MSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFL 141
           ++++DFG + DG T NT+A ++A+        K G ++ +P G + +G+  L S+ TL L
Sbjct: 157 VNVRDFGAIDDGKTLNTKAIQQAIDSC-----KPGCRVEIPAGTYKSGALWLKSDMTLNL 211
Query: 142 ERGAVMLGSQ 151
           + GA++LGS+
Sbjct: 212 QAGAILLGSE 221

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	151
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	5e-22
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	2e-20
1h80_A	464	IOTA-carrageenase; hydrolase, IOTA-carrageenan dou	9e-20
2pyg_A	377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	7e-17
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	1e-12
2x6w_A	600	Tail spike protein; viral protein, beta-helix, hyd	5e-12
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	2e-09
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	8e-09
2vbk_A	514	Tailspike-protein; viral adhesion protein, viral p	1e-06
1rmg_A	422	Rgase A, rhamnogalacturonase A; hydrolase, inverti	3e-06
1czf_A	362	Polygalacturonase II; beta helix, hydrolase; HET:	4e-06

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608

 Score = 90.1 bits (223), Expect = 5e-22
 Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 5/69 (7%)

Query: 83  SIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLE 142
           +++DFG + DG T NT+A ++A+        K G ++ +P G + +G+  L S+ TL L+
Sbjct: 158 NVRDFGAIDDGKTLNTKAIQQAIDS-----CKPGCRVEIPAGTYKSGALWLKSDMTLNLQ 212

Query: 143 RGAVMLGSQ 151
            GA++LGS+
Sbjct: 213 AGAILLGSE 221

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448

 Score = 85.2 bits (211), Expect = 2e-20
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)

Query: 75  LPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLT 134
           +P+R+V  ++ DFG  GDG T  +E+F++A+        +GG +L VPEG++LTG  +L 
Sbjct: 23  IPDREV--NLLDFGARGDGRTDCSESFKRAIEE---LSKQGGGRLIVPEGVFLTGPIHLK 77

Query: 135 SNFTLFLERGAVMLGS 150
           SN  L ++     +  
Sbjct: 78  SNIELHVKGTIKFIPD 93

>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464

 Score = 83.3 bits (205), Expect = 9e-20
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 83  SIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLE 142
            + DFG  G+ T+ ++ A ++A+  +       G  L +P G +      + SN  + +E
Sbjct: 24  LVDDFGANGNDTSDDSNALQRAINAISR--KPNGGTLLIPNGTYHFLGIQMKSNVHIRVE 81

Query: 143 RGAVMLGSQ 151
              ++  + 
Sbjct: 82  SDVIIKPTW 90

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377

 Score = 74.9 bits (183), Expect = 7e-17
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 83  SIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLE 142
           ++KDFG +GDG + +  + + A+         GG  + +P G +   +     +  L L+
Sbjct: 4   NVKDFGALGDGVSDDRASIQAAIDA---AYAAGGGTVYLPAGEYRVSAAGEPGDGCLMLK 60

Query: 143 RGAVMLGSQ 151
            G  + G+ 
Sbjct: 61  DGVYLAGAG 69

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376

 Score = 63.2 bits (154), Expect = 1e-12
 Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 88  GGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEG---LWLTGSFNLTSNFTLFLERG 144
             +   +++ T   +KA+          G  + +  G   ++L+G  +L S  +L +++G
Sbjct: 16  TTLKADSSTATSTIQKALNNC-----DQGKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKG 70

Query: 145 AVMLGSQ 151
             +    
Sbjct: 71  VTLRAVN 77

>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600

 Score = 61.4 bits (148), Expect = 5e-12
 Identities = 23/113 (20%), Positives = 33/113 (29%), Gaps = 30/113 (26%)

Query: 67  AGLLGDQYLPERKVAM-----------SIKDFGGVGDGTTSNTEAFRKAVRYMQ----GF 111
           AG +G QY       M           S+ DF     G          + +Y+Q      
Sbjct: 15  AGHVGYQYRRNTGSTMRMVSDVLDERVSLWDFHCDPSGNVIQPGPNVDSRQYLQAAIDYV 74

Query: 112 GDKGGAQLNVPEG-------------LWLTGSFNLTSNFTLFLERGAVMLGSQ 151
              GG  + +P G                +G   L SN  L +E    +  S 
Sbjct: 75  SSNGGGTITIPAGYTWYLGSYGVGGIAGHSGIIQLRSNVNLNIE--GRIHLSP 125

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609

 Score = 52.1 bits (124), Expect = 8e-09
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%)

Query: 72  DQYLPERK-VAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWL-TG 129
            Q + E K   +S+K +G  GDG T +  AF KA+        + G  + VP G ++ + 
Sbjct: 12  IQVIDELKQFGVSVKTYGAKGDGVTDDIRAFEKAI--------ESGFPVYVPYGTFMVSR 63

Query: 130 SFNLTSNFTLFLE 142
              L SN  L   
Sbjct: 64  GIKLPSNTVLTGA 76

>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514

 Score = 45.7 bits (107), Expect = 1e-06
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 81  AMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLF 140
           A+SI DFG + DG T N +A + A+  +       G +L +P       +       TL 
Sbjct: 51  AISILDFGVIDDGVTDNYQAIQNAIDAVASLP--SGGELFIPAS---NQAVGYIVGSTLL 105

Query: 141 LERGAVMLGS 150
           +  G  + G 
Sbjct: 106 IPGGVNIRGV 115

>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 12/58 (20%)

Query: 83  SIKDFGGVGDGTTSNTEAFRKAVRYMQGFGD-KGGAQLNVPEGLWLTGSFNLTSNFTL 139
           +I  +G V D +T    A   A      +   K G  + +P      G++ L +  TL
Sbjct: 22  NILSYGAVADNSTDVGPAITSA------WAACKSGGLVYIPS-----GNYALNTWVTL 68

>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 3/60 (5%)

Query: 83  SIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLE 142
           +        D  T  T A  KA +            + VP G  L  +  LTS   +  E
Sbjct: 19  ASASPIEARDSCTFTTAAAAKAGK--AKCSTITLNNIEVPAGTTLDLT-GLTSGTKVIFE 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	99.75
1h80_A	464	IOTA-carrageenase; hydrolase, IOTA-carrageenan dou	99.72
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	99.68
2pyg_A	377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	99.64
2vbk_A	514	Tailspike-protein; viral adhesion protein, viral p	99.6
1rmg_A	422	Rgase A, rhamnogalacturonase A; hydrolase, inverti	99.52
3eqn_A	758	Glucan 1,3-beta-glucosidase; tandem beta-helix dom	99.46
2x6w_A	600	Tail spike protein; viral protein, beta-helix, hyd	99.45
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	99.42
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	99.38
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	99.36
3eqn_A	758	Glucan 1,3-beta-glucosidase; tandem beta-helix dom	99.31
1x0c_A	549	Isopullulanase; glycoside hydrolase family 49, gly	98.51
2inu_A	410	Insulin fructotransferase; right-handed parallel b	97.99
1ogo_X	574	Dextranase; hydrolase, dextran degradation, glycos	97.93
2iq7_A	339	Endopolygalacturonase; parallel beta helix, hydrol	97.74
1hg8_A	349	Endopolygalacturonase; hydrolase, pectin degradati	97.69
1nhc_A	336	Polygalacturonase I; beta-helix, hydrolase; HET: M	97.56
1ia5_A	339	Polygalacturonase; glycosylhydrolase, hydrolase; H	97.39
1czf_A	362	Polygalacturonase II; beta helix, hydrolase; HET:	97.21
1k5c_A	335	Endopolygalacturonase; beta helical structure, gly	96.75
1xg2_A	317	Pectinesterase 1; protein-protein complex, beta he	93.78
1gq8_A	319	Pectinesterase; hydrolase, carboxylic ester hydrol	93.47
1dbg_A	506	Chondroitinase B; beta helix, polysaccharide lyase	92.67
1ru4_A	400	Pectate lyase, PEL9A; parallel beta-helix; 1.60A {	92.31
2x3h_A	542	K5 lyase, K5A lyase; bacteriophage, glycosaminogly	90.76
3uw0_A	364	Pectinesterase; right-handed beta-helix, carbohydr	89.02
2nsp_A	342	Pectinesterase A; michaelis complex, hydrolase; HE	87.8
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	80.08

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima}

Probab=99.75  E-value=8.2e-19  Score=154.62  Aligned_cols=72  Identities=33%  Similarity=0.588  Sum_probs=67.6

Q ss_pred             CCCCCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEECCCeEEEEcCCcEEEcCC
Q 044614           75 LPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVMLGSQ  151 (151)
Q Consensus        75 ~~~~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~LkSnvtL~l~~GAvIlgS~  151 (151)
                      |..++.++||+||||+|||++|||+|||+||++|++   .||++|+||+|+|++++|.|+|+++|+++  ++|+||+
T Consensus        21 p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~c~~---~ggg~v~vP~G~yl~~~l~l~s~v~l~l~--gtL~~s~   92 (448)
T 3jur_A           21 PQIPDREVNLLDFGARGDGRTDCSESFKRAIEELSK---QGGGRLIVPEGVFLTGPIHLKSNIELHVK--GTIKFIP   92 (448)
T ss_dssp             CCCCSCEEEGGGGTCCCEEEEECHHHHHHHHHHHHH---HTCEEEEECSSEEEESCEECCTTEEEEES--SEEEECC
T ss_pred             CCCCCcEEEEEecccCCCCCeecHHHHHHHHHhhhh---cCCeEEEECCCcEEEeeeEeCCCcEEEEE--EEEEecC
Confidence            566778999999999999999999999999999987   68999999999999999999999999999  8999984

>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A

Probab=99.72  E-value=7.6e-18  Score=149.63  Aligned_cols=73  Identities=22%  Similarity=0.459  Sum_probs=68.1

Q ss_pred             CCCCCeeEE-eeecCccCCCcchhHHHHHHHHHHhHcCCCC-CCcEEEecCCeEEEeeeEECCCeEEEEcCCcEEEcC
Q 044614           75 LPERKVAMS-IKDFGGVGDGTTSNTEAFRKAVRYMQGFGDK-GGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVMLGS  150 (151)
Q Consensus        75 ~~~~~~~~n-V~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~-GGg~V~VPaGtYltg~L~LkSnvtL~l~~GAvIlgS  150 (151)
                      +..+...++ |+||||+|||.+|||+|||+||++|++   . ++++|+||+|+|++++|.|+|+++|++++||+|+++
T Consensus        15 p~~~~~~~~~V~dfGA~gDG~tDdT~Aiq~Aidac~~---~~ggg~V~vP~GtYl~g~I~lks~v~L~l~~GatL~~s   89 (464)
T 1h80_A           15 PTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISR---KPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVIIKPT   89 (464)
T ss_dssp             CSCCSEEEEHHHHHCCCTTSSSBCHHHHHHHHHHHHT---STTCEEEEECSSEEEECSEECCTTEEEEECTTCEEEEC
T ss_pred             CCCCcceeeehhccCcCCCCCchhHHHHHHHHHHHhh---ccCCcEEEECCCeEEEeeEeccCceEEEEcCCcEEEec
Confidence            455667899 999999999999999999999999987   5 789999999999999999999999999999999987

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*

Probab=99.68  E-value=2.9e-17  Score=148.87  Aligned_cols=71  Identities=34%  Similarity=0.674  Sum_probs=65.3

Q ss_pred             CCCCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEECCCeEEEEcCCcEEEcCC
Q 044614           76 PERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVMLGSQ  151 (151)
Q Consensus        76 ~~~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~LkSnvtL~l~~GAvIlgS~  151 (151)
                      ..++..+||++|||+|||++|||+|||+||++|..     |++|+||+|+|++++|.|+|+++|++++||+|++++
T Consensus       151 ~~~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai~~c~~-----g~~v~vP~G~y~~g~i~lks~v~L~l~~gatL~~s~  221 (608)
T 2uvf_A          151 SAKPQIVNVRDFGAIDDGKTLNTKAIQQAIDSCKP-----GCRVEIPAGTYKSGALWLKSDMTLNLQAGAILLGSE  221 (608)
T ss_dssp             CCCCCEEEGGGGTCCSSSSCCCHHHHHHHHHTCCT-----TEEEEECSEEEEECCEECCSSEEEEECTTEEEEECS
T ss_pred             ccCCCEEecccccccCCCCccCHHHHHHHHHhcCC-----CCEEEECCCceEecceeccCceEEEecCCcEEEecC
Confidence            34567899999999999999999999999997743     889999999999999999999999999999999974

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*

Probab=99.64  E-value=1.6e-16  Score=132.72  Aligned_cols=67  Identities=25%  Similarity=0.461  Sum_probs=60.6

Q ss_pred             eEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEE--------eeeEECCCeEEEEc-CC-cEEEcC
Q 044614           81 AMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLT--------GSFNLTSNFTLFLE-RG-AVMLGS  150 (151)
Q Consensus        81 ~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYlt--------g~L~LkSnvtL~l~-~G-AvIlgS  150 (151)
                      .+||+||||+|||.+|||+|||+||++|++   .|+++|+||+|+|++        ++|.++++++|+++ +| ++|+++
T Consensus         2 ~~~v~~~ga~~dg~~ddt~aiq~Ai~~a~~---~gg~~v~~p~G~y~~~~~~~~~~g~l~~~~~v~l~g~g~~~t~l~~~   78 (377)
T 2pyg_A            2 DYNVKDFGALGDGVSDDRASIQAAIDAAYA---AGGGTVYLPAGEYRVSAAGEPGDGCLMLKDGVYLAGAGMGETVIKLI   78 (377)
T ss_dssp             CEEGGGGTCCCEEEEECHHHHHHHHHHHHH---TTSEEEEECSEEEEECCCSSGGGCSEECCTTEEEEESSBTTEEEEEC
T ss_pred             EeeeeecCCCCCCCcchHHHHHHHHHHHHh---cCCCEEEECCeEEEEcccccCCcccEEecCCeEEEEcCCCCcEEEec
Confidence            689999999999999999999999999987   689999999999997        58999999999999 56 566654

>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A*

Probab=99.60  E-value=5.1e-16  Score=139.15  Aligned_cols=70  Identities=26%  Similarity=0.368  Sum_probs=63.1

Q ss_pred             CeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCC----eEEE-eeeEECCCeEEEEcCCcEEEcC
Q 044614           79 KVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEG----LWLT-GSFNLTSNFTLFLERGAVMLGS  150 (151)
Q Consensus        79 ~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaG----tYlt-g~L~LkSnvtL~l~~GAvIlgS  150 (151)
                      +..+||+||||+|||++|||+|||+||++|++  ..+|++||||+|    +|++ ++|+|++|++|+++.+++|+++
T Consensus        49 s~~~NVkDFGAkGDGvTDDTaAIQkAIdaA~a--~~GGGtVyVPaG~~~~tYlvt~tI~LkSnV~L~Ge~~AtIl~s  123 (514)
T 2vbk_A           49 KEAISILDFGVIDDGVTDNYQAIQNAIDAVAS--LPSGGELFIPASNQAVGYIVGSTLLIPGGVNIRGVGKASQLRA  123 (514)
T ss_dssp             TTCCBGGGGCCCCSSSSCCHHHHHHHHHHHHT--STTCEEEECCCCSSTTCEEESSCEEECTTEEEECCSTTSEEEE
T ss_pred             CcEEEeeccCcCCCCCcccHHHHHHHHHHHhh--cCCCeEEEECCCCcceeEEECCeEEecCCeEEEEecCceEeec
Confidence            46899999999999999999999999999876  137899999999    8986 6899999999999999988654

>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3

Probab=99.52  E-value=1e-14  Score=127.14  Aligned_cols=66  Identities=23%  Similarity=0.348  Sum_probs=58.9

Q ss_pred             CeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEee-eEEC--CCeEEEEcCCcEEEcC
Q 044614           79 KVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGS-FNLT--SNFTLFLERGAVMLGS  150 (151)
Q Consensus        79 ~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~-L~Lk--SnvtL~l~~GAvIlgS  150 (151)
                      ..++||+||||++||++|||+|||+||++|.     ++++|+||+|+|++++ |.|+  ++++|+++ |+++.++
T Consensus        18 ~~~~~V~~~GA~~dg~tddT~Aiq~Ai~ac~-----~g~~V~vP~G~Yli~~~l~l~g~s~v~l~l~-G~~l~~~   86 (422)
T 1rmg_A           18 TKTCNILSYGAVADNSTDVGPAITSAWAACK-----SGGLVYIPSGNYALNTWVTLTGGSATAIQLD-GIIYRTG   86 (422)
T ss_dssp             HCEEEGGGGTCCCSSSSBCHHHHHHHHHHHT-----BTCEEEECSSEEEECSCEEEESCEEEEEEEC-SEEEECC
T ss_pred             CcEEEeeeccccCCCCcccHHHHHHHHHHCC-----CCCEEEECCCeEEeCCceeecCCCeEEEEEc-CcEEccc
Confidence            4589999999999999999999999999884     4889999999999986 9998  68999987 8887754

>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A*

Probab=99.46  E-value=4.3e-14  Score=132.18  Aligned_cols=73  Identities=22%  Similarity=0.344  Sum_probs=61.1

Q ss_pred             CCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCC------CCCcEEEecCCeEE-EeeeEECCCeEEEEcCC--cEEE
Q 044614           78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGD------KGGAQLNVPEGLWL-TGSFNLTSNFTLFLERG--AVML  148 (151)
Q Consensus        78 ~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~------~GGg~V~VPaGtYl-tg~L~LkSnvtL~l~~G--AvIl  148 (151)
                      .+..+||+||||+|||++|||+|||+||+++.+...      ..+++||||+|+|+ +++|+++++++|..+..  .+|+
T Consensus        46 y~v~~nV~dfGA~GDG~tDDT~Aiq~Ai~~a~~~Gggc~~st~~~~~V~~P~GtYlvs~tI~l~~~t~L~G~~~~~pvIk  125 (758)
T 3eqn_A           46 YPVFRNVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTYKVSSPLVVLYQTQLIGDAKNLPTLL  125 (758)
T ss_dssp             CCSEEEGGGGTCCCEEEEECHHHHHHHHHTTSCSCTTCCCCSSSCEEEEECSSEEEESSCEECCTTEEEEECSSSCCEEE
T ss_pred             CeEEEEHHHcCcCCCCCchhHHHHHHHHHHhhhcccccccccccceEEEECCceEEEcccEEccCCeEEEecCCCCCeEe
Confidence            445789999999999999999999999998865210      11269999999998 67999999999999987  5887


Q ss_pred             cC
Q 044614          149 GS  150 (151)
Q Consensus       149 gS  150 (151)
                      ++
T Consensus       126 a~  127 (758)
T 3eqn_A          126 AA  127 (758)
T ss_dssp             EC
T ss_pred             cC
Confidence            65

>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A*

Probab=99.45  E-value=7.1e-14  Score=128.05  Aligned_cols=63  Identities=25%  Similarity=0.447  Sum_probs=59.0

Q ss_pred             CeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCC-eEEE------------eeeEECCCeEEEEcCCc
Q 044614           79 KVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEG-LWLT------------GSFNLTSNFTLFLERGA  145 (151)
Q Consensus        79 ~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaG-tYlt------------g~L~LkSnvtL~l~~GA  145 (151)
                      ...+||+||||++|    ||+|||+||++|++   .||++|+||+| +|++            |+|.|+||++|+++.  
T Consensus        49 ~~~~nV~dfGA~gD----dT~AIqkAIdaCs~---~GGgtV~VPaG~tYLt~sv~~gp~~~~sGpI~LkSnVtL~LdG--  119 (600)
T 2x6w_A           49 DPSGNVIQPGPNVD----SRQYLQAAIDYVSS---NGGGTITIPAGYTWYLGSYGVGGIAGHSGIIQLRSNVNLNIEG--  119 (600)
T ss_dssp             CTTSCBCCCCTTCC----CHHHHHHHHHHHHH---TTCEEEEECTTCEEEECSCCCGGGGGGTEEEECCTTEEEEECS--
T ss_pred             CcEEeeecCCCCcc----CHHHHHHHHHHhhh---cCCCEEEECCCCEEEecccccccccccccceEEcCceEEeeec--
Confidence            35899999999999    99999999999987   78999999999 9999            999999999999997  


Q ss_pred             EEEcC
Q 044614          146 VMLGS  150 (151)
Q Consensus       146 vIlgS  150 (151)
                      +|+++
T Consensus       120 tL~as  124 (600)
T 2x6w_A          120 RIHLS  124 (600)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            88876

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A

Probab=99.42  E-value=1.2e-13  Score=126.66  Aligned_cols=65  Identities=32%  Similarity=0.489  Sum_probs=57.9

Q ss_pred             CCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEE-eeeEECCCeEEEEcC--CcEEEcC
Q 044614           78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLT-GSFNLTSNFTLFLER--GAVMLGS  150 (151)
Q Consensus        78 ~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYlt-g~L~LkSnvtL~l~~--GAvIlgS  150 (151)
                      ++.++||+||||+|||++|||+|||+||++       | ++|+||+|+|++ ++|.|+++++|+++.  .++|.++
T Consensus        19 ~~~~~nV~dfGA~gDG~tDdT~Aiq~Ai~~-------G-g~V~iP~GtYlis~~l~l~snv~L~g~g~~~t~L~~~   86 (609)
T 3gq8_A           19 KQFGVSVKTYGAKGDGVTDDIRAFEKAIES-------G-FPVYVPYGTFMVSRGIKLPSNTVLTGAGKRNAVIRFM   86 (609)
T ss_dssp             CSSSEEGGGGTCCCEEEEECHHHHHHHHHT-------S-SCEEECSEEEEESSCEEECSSEEEEESCTTTEEEEEC
T ss_pred             CCcEEEeEecccCCCCCchhHHHHHHHHHc-------C-CEEEECCccEEEeCceEECCCcEEEEeeCCCCEEEeC
Confidence            346899999999999999999999999983       3 899999999998 999999999999986  4677754

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3

Probab=99.38  E-value=4.6e-13  Score=114.26  Aligned_cols=66  Identities=15%  Similarity=0.356  Sum_probs=54.2

Q ss_pred             CCCCCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecC---CeEEEeeeEECCCeEEEEcCCcEEEcCC
Q 044614           75 LPERKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPE---GLWLTGSFNLTSNFTLFLERGAVMLGSQ  151 (151)
Q Consensus        75 ~~~~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPa---GtYltg~L~LkSnvtL~l~~GAvIlgS~  151 (151)
                      |..+. +++|.+||     .+|||+|||+||++|.+     |++++||+   |+|++|+|.|+|+++|++++||+|+|++
T Consensus         9 p~~p~-~~~v~~~G-----~~~dT~aiq~Ai~ac~~-----Gg~v~~~~~~~g~yl~g~i~l~s~vtL~l~~Ga~L~~s~   77 (376)
T 1bhe_A            9 PKTPS-SCTTLKAD-----SSTATSTIQKALNNCDQ-----GKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRAVN   77 (376)
T ss_dssp             CCCCC-EEEEEECC-----SSBCHHHHHHHHTTCCT-----TCEEEEECSSSSEEEESCEECCTTCEEEECTTCEEEECS
T ss_pred             CCCCC-eEEECCCC-----CCccHHHHHHHHHHhcc-----CCcEEEECCCCceEEEeEEEECCCCEEEECCCeEEEeCC
Confidence            34444 69999986     47999999999997754     45555553   8999999999999999999999999973

>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A*

Probab=99.31  E-value=9.2e-13  Score=123.26  Aligned_cols=67  Identities=21%  Similarity=0.370  Sum_probs=60.7

Q ss_pred             CeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEE-EeeeEECCCeEEEEcCCcEEEcC
Q 044614           79 KVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWL-TGSFNLTSNFTLFLERGAVMLGS  150 (151)
Q Consensus        79 ~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYl-tg~L~LkSnvtL~l~~GAvIlgS  150 (151)
                      ..++||+||||+|||+||||+|||+||+++     .++.+||||+|+|+ +++|+++++++|..+.-++|+++
T Consensus       398 ~~~vnVkd~GA~GDG~tDDT~Ai~~al~aa-----~~g~~v~~P~G~Y~vt~Ti~ip~~~~ivG~~~~~I~~~  465 (758)
T 3eqn_A          398 SDFVSVRSQGAKGDGHTDDTQAIKNVFAKY-----AGCKIIFFDAGTYIVTDTIQIPAGTQIVGEVWSVIMGT  465 (758)
T ss_dssp             GGEEETTTTTCCCEEEEECHHHHHHHHHHH-----TTTSEEECCSEEEEESSCEEECTTCEEECCSSEEEEEC
T ss_pred             cceEEeeeccccCCCCchhHHHHHHHHHHh-----cCCCEEEECCCEeEECCeEEcCCCCEEEecccceEecC
Confidence            468999999999999999999999999954     35889999999998 68899999999999988999874

>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*

Probab=98.51  E-value=5.2e-09  Score=94.45  Aligned_cols=69  Identities=13%  Similarity=0.198  Sum_probs=55.0

Q ss_pred             eEEeeecCccCCCcchhHHHHHHHHH-HhHcCC----C------------------CCCcEEEecCCeEEE---eeeEEC
Q 044614           81 AMSIKDFGGVGDGTTSNTEAFRKAVR-YMQGFG----D------------------KGGAQLNVPEGLWLT---GSFNLT  134 (151)
Q Consensus        81 ~~nV~dFGA~gDG~tDdT~AfQ~AId-aa~~~~----~------------------~GGg~V~VPaGtYlt---g~L~Lk  134 (151)
                      .+|...|||++||.+|++++|. .|. .+....    .                  .++++|+||+|+|++   |+|.++
T Consensus       142 ~~n~~~~~~~~dg~~~~~~~l~-ifa~p~~~~~~~P~~~~~~~~~~~~g~~~~~~~~ggg~v~vP~G~yl~g~~G~i~l~  220 (549)
T 1x0c_A          142 EFDDDLISLAPSGARQPENALL-IFASPFENSSTKPQPGSPNSIAPAPGRVLGLNTTSASTVVFNPGVYYFTGHDHMVLS  220 (549)
T ss_dssp             EEGGGEEEETTTTEEEESEEEE-EEEECCCCTTTSCCTTCSSEECCCSEECCCTTTCCCSEEEECSEEEECCTTCCEEEC
T ss_pred             EECCccccccccCcCCCcceEE-EEcCChhhccCCCCcCCCCceeeccccccccccCCCCEEEECCeEEecCCceEEEec
Confidence            3444579999999999999988 443 232210    1                  478999999999996   699999


Q ss_pred             CCeE-EEEcCCcEEEcC
Q 044614          135 SNFT-LFLERGAVMLGS  150 (151)
Q Consensus       135 Snvt-L~l~~GAvIlgS  150 (151)
                      ||++ |++++||+|+|+
T Consensus       221 s~~~~L~l~~GA~L~gs  237 (549)
T 1x0c_A          221 SSVTWVYFAPGAYVKGA  237 (549)
T ss_dssp             TTCCEEEECTTEEEESC
T ss_pred             CCCCeEecCCCCEEEEE
Confidence            9999 999999999875

>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A*

Probab=97.99  E-value=4.4e-06  Score=73.81  Aligned_cols=68  Identities=9%  Similarity=0.086  Sum_probs=57.0

Q ss_pred             CeeEEeeec----CccCCCcchhHHHHHHHHHHhHcC----CCCCCcEEEecCCeEE-EeeeEECCC-eEEEEcC-CcE
Q 044614           79 KVAMSIKDF----GGVGDGTTSNTEAFRKAVRYMQGF----GDKGGAQLNVPEGLWL-TGSFNLTSN-FTLFLER-GAV  146 (151)
Q Consensus        79 ~~~~nV~dF----GA~gDG~tDdT~AfQ~AIdaa~~~----~~~GGg~V~VPaGtYl-tg~L~LkSn-vtL~l~~-GAv  146 (151)
                      ...|||++|    +++||+.+|++++|+++|..+.++    ..+.|.+|++|+|+|. .|++.+... ++|..+. |++
T Consensus        12 ~~~~~vt~~~~~~~~~~~~~~d~~~~i~~~ia~~~~~~~~~~A~pGdvI~L~~G~Y~l~g~ivIdkp~LtL~G~~~g~~   90 (410)
T 2inu_A           12 PNTYDVTTWRIKAHPEVTAQSDIGAVINDIIADIKQRQTSPDARPGAAIIIPPGDYDLHTQVVVDVSYLTIAGFGHGFF   90 (410)
T ss_dssp             CCEEETTTCCBTTBTTCCHHHHHHHHHHHHHHHHHHHCCCTTSCCCEEEECCSEEEEECSCEEECCTTEEEECSCCCCC
T ss_pred             CceEEEEEecccCCCcCCCchhHHHHHHHHHHHhhcccccccCCCCCEEEECCCeeccCCcEEEecCcEEEEecCCCcc
Confidence            468999999    899999999999999999887531    1256899999999997 699999554 9999887 544

>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X*

Probab=97.93  E-value=5.7e-06  Score=75.35  Aligned_cols=37  Identities=27%  Similarity=0.465  Sum_probs=34.5

Q ss_pred             CCCcEEEecCCeEEE-------------eeeEECCCeE-EEEcCCcEEEcC
Q 044614          114 KGGAQLNVPEGLWLT-------------GSFNLTSNFT-LFLERGAVMLGS  150 (151)
Q Consensus       114 ~GGg~V~VPaGtYlt-------------g~L~LkSnvt-L~l~~GAvIlgS  150 (151)
                      .||++||||+|+|++             |+|.++||++ |++++||+|+|+
T Consensus       229 ~ggg~v~vP~G~yl~~~~~~~gpc~~g~G~i~lkSnvt~L~L~~GA~l~g~  279 (574)
T 1ogo_X          229 GAKSILYFPPGVYWMNQDQSGNSGKLGSNHIRLNSNTYWVYLAPGAYVKGA  279 (574)
T ss_dssp             CSSSEEEECSEEEEECBCTTCCBSCSSSCCEECCTTCCEEEECTTEEEESC
T ss_pred             CCCCEEEECCcEEEEeccccCCcccccceEEEecCCCceEEecCCcEEEcc
Confidence            478999999999999             6799999999 999999999985

>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini}

Probab=97.74  E-value=3.8e-06  Score=70.88  Aligned_cols=44  Identities=20%  Similarity=0.126  Sum_probs=36.7

Q ss_pred             hhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeee-EECCCeEEEEcCC
Q 044614           96 SNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSF-NLTSNFTLFLERG  144 (151)
Q Consensus        96 DdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L-~LkSnvtL~l~~G  144 (151)
                      .||+|||+|+++|.+   .++++|+||+|+|+.  + .|+++++|+++..
T Consensus         6 ~dt~aiq~ai~~c~~---~~g~~v~vP~G~~~~--l~~l~~~~~l~~~g~   50 (339)
T 2iq7_A            6 TDAAAAIKGKASCTS---IILNGIVVPAGTTLD--MTGLKSGTTVTFQGK   50 (339)
T ss_dssp             SCHHHHHHHGGGCSE---EEEESCEECTTCCEE--ECSCCTTCEEEEESE
T ss_pred             CCHHHHHHHHHHhhc---cCCCeEEECCCEEEE--eeccCCCeEEEEeCc
Confidence            579999999999987   678999999999984  4 5578888887743

>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3

Probab=97.69  E-value=5.8e-06  Score=70.24  Aligned_cols=41  Identities=20%  Similarity=0.219  Sum_probs=35.8

Q ss_pred             hHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeee-EECCCeEEEEc
Q 044614           97 NTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSF-NLTSNFTLFLE  142 (151)
Q Consensus        97 dT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L-~LkSnvtL~l~  142 (151)
                      ||+|||+|+++|..   .++++|+||+|+|+.  + .|+++++|+++
T Consensus         7 ~t~aiq~ai~~c~~---~gg~~v~vP~G~~l~--l~~l~~~~~l~~~   48 (349)
T 1hg8_A            7 EYSGLATAVSSCKN---IVLNGFQVPTGKQLD--LSSLQNDSTVTFK   48 (349)
T ss_dssp             SGGGHHHHHHHCSE---EEECCCEECTTCCEE--ETTCCTTCEEEEC
T ss_pred             CHHHHHHHHHhccc---cCCCEEEECCCEEEE--eeccCCCeEEEEc
Confidence            68999999999987   678999999999984  4 56889999886

>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3

Probab=97.56  E-value=7.5e-06  Score=69.00  Aligned_cols=43  Identities=14%  Similarity=0.176  Sum_probs=36.0

Q ss_pred             chhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeee-EECCCeEEEEc
Q 044614           95 TSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSF-NLTSNFTLFLE  142 (151)
Q Consensus        95 tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L-~LkSnvtL~l~  142 (151)
                      ..||+|||+|+++|.+   .++++|+||+|+|+.  | .|+++++|+++
T Consensus         5 ~~~t~aiq~ai~~c~~---~gg~~v~vP~G~~~~--l~~l~~~~~l~~~   48 (336)
T 1nhc_A            5 FTSASEASESISSCSD---VVLSSIEVPAGETLD--LSDAADGSTITFE   48 (336)
T ss_dssp             ESSHHHHHHHGGGCSE---EEEESCEECTTCCEE--CTTCCTTCEEEEE
T ss_pred             ECCHHHHHHHHHHhhc---cCCCeEEECCCEEEE--eeccCCCeEEEEe
Confidence            3579999999999987   678899999999983  4 55788888876

>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A*

Probab=97.39  E-value=2.5e-05  Score=65.97  Aligned_cols=42  Identities=14%  Similarity=0.150  Sum_probs=35.5

Q ss_pred             hHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeee-EECCCeEEEEcC
Q 044614           97 NTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSF-NLTSNFTLFLER  143 (151)
Q Consensus        97 dT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L-~LkSnvtL~l~~  143 (151)
                      -++|||+|+++|.+   .++++|+||+|+|+.  | .|+++++|+++.
T Consensus        11 g~~aiq~ai~~c~~---~gg~~v~vP~G~~l~--l~~l~~~~~l~~~g   53 (339)
T 1ia5_A           11 GASSASKSKTSCST---IVLSNVAVPSGTTLD--LTKLNDGTHVIFSG   53 (339)
T ss_dssp             HHHHHHHHGGGCSE---EEEESCEECTTCCEE--ECSCCTTCEEEEES
T ss_pred             chHHHHHHHHHhhc---cCCCeEEECCCEEEE--eeccCCCeEEEEeC
Confidence            46799999999987   678899999999984  4 568899998874

>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3

Probab=97.21  E-value=4.8e-05  Score=65.04  Aligned_cols=42  Identities=21%  Similarity=0.211  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeee-EECCCeEEEEcCC
Q 044614           98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSF-NLTSNFTLFLERG  144 (151)
Q Consensus        98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L-~LkSnvtL~l~~G  144 (151)
                      +.|||+|+++|..   .++++|+||+|+|+.  + .|+++++|+++..
T Consensus        35 ~~aiq~ai~~c~~---~~g~~v~vP~G~~l~--l~~l~~~~~l~~~g~   77 (362)
T 1czf_A           35 AAAAKAGKAKCST---ITLNNIEVPAGTTLD--LTGLTSGTKVIFEGT   77 (362)
T ss_dssp             HHHHHHHGGGCSE---EEEESCEECTTCCEE--ECSCCTTCEEEEESE
T ss_pred             HHHHHHHHHHhhc---cCCCEEEECCCEEEE--eeccCCCeEEEEeCc
Confidence            6799999999986   678899999999983  4 5688899988754

>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A*

Probab=96.75  E-value=8.5e-05  Score=62.89  Aligned_cols=41  Identities=15%  Similarity=0.127  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEECCCeEEEEcCC
Q 044614           98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERG  144 (151)
Q Consensus        98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~LkSnvtL~l~~G  144 (151)
                      +.|+|+ +++|.+   .++++|+||+|+|+  .|.++++++|+++..
T Consensus         8 ~~aiq~-i~aC~~---~gg~~v~vP~G~~l--~l~l~~~~~l~~~g~   48 (335)
T 1k5c_A            8 VDDAKD-IAGCSA---VTLNGFTVPAGNTL--VLNPDKGATVTMAGD   48 (335)
T ss_dssp             TTGGGG-CTTCSE---EEECCEEECTTCCE--EECCCTTCEEEECSC
T ss_pred             HHHhHH-HHhccc---CCCCEEEECCCEEE--EEEeCCCeEEEEecc
Confidence            678999 999987   67899999999998  467789999988753

>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum}

Probab=93.78  E-value=0.1  Score=44.02  Aligned_cols=48  Identities=17%  Similarity=0.206  Sum_probs=35.9

Q ss_pred             HHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEcC
Q 044614          101 FRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLGS  150 (151)
Q Consensus       101 fQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlgS  150 (151)
                      ||+||+++... ....-+|+|.+|+|. ..+.+   +.+++|..+.  .++|.++
T Consensus        18 Iq~AI~aap~~-~~~~~~I~I~~G~Y~-E~V~I~~~k~~Itl~G~g~~~tiI~~~   70 (317)
T 1xg2_A           18 LAEAVAAAPDK-SKTRYVIYVKRGTYK-ENVEVASNKMNLMIVGDGMYATTITGS   70 (317)
T ss_dssp             HHHHHHHSCSS-CSSCEEEEECSEEEE-CCEEECTTSCSEEEEESCTTTEEEEEC
T ss_pred             HHHHHhhcccC-CCceEEEEEcCCEEe-eeeecCCCCCcEEEEEcCCCCcEEEec
Confidence            99999998651 122359999999996 67778   4679999886  5666654

>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5

Probab=93.47  E-value=0.12  Score=43.57  Aligned_cols=48  Identities=13%  Similarity=0.207  Sum_probs=35.6

Q ss_pred             HHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE---CCCeEEEEcC--CcEEEcC
Q 044614          101 FRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL---TSNFTLFLER--GAVMLGS  150 (151)
Q Consensus       101 fQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L---kSnvtL~l~~--GAvIlgS  150 (151)
                      ||+||+++... .....+|+|.+|+|. ..+.+   +.+++|..+.  .++|.+.
T Consensus        22 Iq~AI~aap~~-~~~~~~I~I~~G~Y~-E~V~I~~~k~~Itl~G~g~~~tiI~~~   74 (319)
T 1gq8_A           22 VSEAVAAAPED-SKTRYVIRIKAGVYR-ENVDVPKKKKNIMFLGDGRTSTIITAS   74 (319)
T ss_dssp             HHHHHHHSCSS-CSSCEEEEECSEEEE-CCEEECTTCCSEEEEESCTTTEEEEEC
T ss_pred             HHHHHHhcccc-CCceEEEEEcCCeEe-eeeeccCCCccEEEEEcCCCccEEEec
Confidence            99999998651 122359999999996 67788   4679998885  5666553

>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*

Probab=92.67  E-value=0.15  Score=45.71  Aligned_cols=47  Identities=13%  Similarity=0.228  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE------CCCeEEEEcC--CcEEEc
Q 044614           98 TEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL------TSNFTLFLER--GAVMLG  149 (151)
Q Consensus        98 T~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L------kSnvtL~l~~--GAvIlg  149 (151)
                      .+.||+|++.+..     |.+|+|++|+|.-+.+.+      ...++|.-+.  +++|.|
T Consensus        31 ~~~Lq~Ai~~A~p-----GDtI~L~~GtY~~~~i~i~~sGt~~~pItl~~~~~~~~vi~G   85 (506)
T 1dbg_A           31 NETLYQVVKEVKP-----GGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTG   85 (506)
T ss_dssp             HHHHHHHHHHCCT-----TCEEEECSEEEETCEEEECCCCBTTBCEEEEESSTTSEEEEE
T ss_pred             HHHHHHHHHhCCC-----CCEEEECCCEEecceEEEecCCcCCCCEEEECCCCCccEEeC
Confidence            4569999998755     899999999998657777      4568887762  466665

>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9

Probab=92.31  E-value=0.27  Score=42.43  Aligned_cols=66  Identities=17%  Similarity=0.236  Sum_probs=42.2

Q ss_pred             CCeeEEeeecCc-cCCCcchhHH-HHHHHHHHhHcCCCCCCcEEEecCCeEE-------EeeeEE-CCC-----eEEEEc
Q 044614           78 RKVAMSIKDFGG-VGDGTTSNTE-AFRKAVRYMQGFGDKGGAQLNVPEGLWL-------TGSFNL-TSN-----FTLFLE  142 (151)
Q Consensus        78 ~~~~~nV~dFGA-~gDG~tDdT~-AfQ~AIdaa~~~~~~GGg~V~VPaGtYl-------tg~L~L-kSn-----vtL~l~  142 (151)
                      .+..+-|..-|- .++|.+.++. .||+|++.+..     |.+|+|.+|+|.       ...|.+ +++     ++|.-.
T Consensus        13 ~~~~~yVsp~Gsd~~~G~t~~~P~tiq~Ai~~a~p-----GdtI~l~~GtY~~~~~e~~~~~i~~~~sGt~~~pIti~~~   87 (400)
T 1ru4_A           13 TKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNP-----GELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAA   87 (400)
T ss_dssp             CSCEEEECTTCCTTCCSSSTTSCBCHHHHHHHCCT-----TCEEEECSEEEECCCBTTBCCCEEECCCCBTTBCEEEEEG
T ss_pred             CccEEEEcCCCCCCCCCccccCCccHHHHHhhCCC-----CCEEEECCCeEccccccccceeEEecCCCCCCCCEEEEEe
Confidence            345566644342 2334121111 59999998754     789999999999       467777 455     888777


Q ss_pred             C--CcEEE
Q 044614          143 R--GAVML  148 (151)
Q Consensus       143 ~--GAvIl  148 (151)
                      .  .++|.
T Consensus        88 ~g~~~vI~   95 (400)
T 1ru4_A           88 NCGRAVFD   95 (400)
T ss_dssp             GGCCEEEE
T ss_pred             cCCCCEEe
Confidence            5  45664

>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5}

Probab=90.76  E-value=0.17  Score=44.53  Aligned_cols=46  Identities=24%  Similarity=0.480  Sum_probs=38.5

Q ss_pred             eeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE
Q 044614           80 VAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL  133 (151)
Q Consensus        80 ~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L  133 (151)
                      +++.+++|||.+|-.+||+++|.+-+..        -..|+||.|.|-+.-+.+
T Consensus        63 rvls~k~fga~~~~~~d~~~~~~~sl~s--------~~~v~i~~gvf~ss~i~~  108 (542)
T 2x3h_A           63 RVLTSKPFGAAGDATTDDTEVIAASLNS--------QKAVTISDGVFSSSGINS  108 (542)
T ss_dssp             HBCBSSCTTCCCBSSSCCHHHHHHHHTS--------SSCEECCSEEEEECCEEE
T ss_pred             eeeecccccccCCcccCcHHHHHhhhcc--------cccEeccccccccccccc
Confidence            4678899999999999999999887753        445999999998776665

>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp}

Probab=89.02  E-value=0.62  Score=40.07  Aligned_cols=48  Identities=17%  Similarity=0.184  Sum_probs=34.3

Q ss_pred             HHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE-CCCeEEEEcC--CcEEEc
Q 044614           99 EAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL-TSNFTLFLER--GAVMLG  149 (151)
Q Consensus        99 ~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L-kSnvtL~l~~--GAvIlg  149 (151)
                      .-||+||+++...  ....+|+|.+|+|. ..+.+ +++++|..+.  .++|.+
T Consensus        45 ~TIq~Ai~aa~~~--~~~~~I~I~~G~Y~-E~v~I~k~~itl~G~g~~~TiIt~   95 (364)
T 3uw0_A           45 SSINAALKSAPKD--DTPFIIFLKNGVYT-ERLEVARSHVTLKGENRDGTVIGA   95 (364)
T ss_dssp             CCHHHHHHHSCSS--SSCEEEEECSEEEC-CCEEECSTTEEEEESCTTTEEEEE
T ss_pred             ccHHHHHhhcccC--CCcEEEEEeCCEEE-EEEEEcCCeEEEEecCCCCeEEEc
Confidence            3499999998751  23459999999997 34555 5679998875  356654

>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A

Probab=87.80  E-value=0.67  Score=39.35  Aligned_cols=47  Identities=17%  Similarity=0.215  Sum_probs=34.8

Q ss_pred             HHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE-CCCeEEEEcC--CcEEEcC
Q 044614          101 FRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL-TSNFTLFLER--GAVMLGS  150 (151)
Q Consensus       101 fQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L-kSnvtL~l~~--GAvIlgS  150 (151)
                      ||+||+++...  ....+|+|.+|+|. ..+.+ +++++|..+.  .++|.+.
T Consensus        21 Iq~Ai~aap~~--~~~~~I~I~~G~Y~-E~V~I~k~~Itl~G~g~~~tiI~~~   70 (342)
T 2nsp_A           21 IADAIASAPAG--STPFVILIKNGVYN-ERLTITRNNLHLKGESRNGAVIAAA   70 (342)
T ss_dssp             HHHHHHTSCSS--SSCEEEEECSEEEE-CCEEECSTTEEEEESCTTTEEEEEC
T ss_pred             HHHHHHhcccC--CCcEEEEEeCCEEE-EEEEEecCeEEEEecCCCCeEEEec
Confidence            99999988651  13359999999997 45666 5679998885  4666553

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=80.08  E-value=0.57  Score=42.71  Aligned_cols=23  Identities=30%  Similarity=0.361  Sum_probs=20.4

Q ss_pred             cCccCCCcchhHHHHHHHHHHhH
Q 044614           87 FGGVGDGTTSNTEAFRKAVRYMQ  109 (151)
Q Consensus        87 FGA~gDG~tDdT~AfQ~AIdaa~  109 (151)
                      =||+|||++|||+|+.+++....
T Consensus         4 ~~a~gdgvtddt~a~~~~l~~~~   26 (670)
T 3ju4_A            4 GSAKGDGVTDDTAALTSALNDTP   26 (670)
T ss_dssp             CCCCCEEEEECHHHHHHHHHHSC
T ss_pred             CcccCCCccCcHHHHHHHhccCC
Confidence            48999999999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	151
d1bhea_	376	b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor	1e-11
d1rmga_	422	b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a	1e-07
d1ogmx2	373	b.80.1.10 (X:202-574) Dextranase, catalytic domain	4e-04

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

 Score = 58.7 bits (141), Expect = 1e-11
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 90  VGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEG---LWLTGSFNLTSNFTLFLERGAV 146
           +   +++ T   +KA+          G  + +  G   ++L+G  +L S  +L +++G  
Sbjct: 18  LKADSSTATSTIQKALNNCDQ-----GKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVT 72

Query: 147 MLGSQ 151
           +    
Sbjct: 73  LRAVN 77

>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 6/69 (8%)

Query: 83  SIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGL-WLTGSFNLTSNFTLFL 141
           +I  +G V D +T    A   A         K G  + +P G   L     LT      +
Sbjct: 22  NILSYGAVADNSTDVGPAITSAWAAC-----KSGGLVYIPSGNYALNTWVTLTGGSATAI 76

Query: 142 ERGAVMLGS 150
           +   ++  +
Sbjct: 77  QLDGIIYRT 85

>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 3/65 (4%)

Query: 87  FGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAV 146
            G +   T  NT+           +G    + L  P G++        ++  L       
Sbjct: 3   SGMIPHMTPDNTQTMTPGPINNGDWG--AKSILYFPPGVYWMNQDQSGNSGKLGSN-HIR 59

Query: 147 MLGSQ 151
           +  + 
Sbjct: 60  LNSNT 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d1rmga_	422	Rhamnogalacturonase A {Aspergillus aculeatus [TaxI	99.55
d1bhea_	376	Polygalacturonase {Erwinia carotovora, subsp. caro	99.45
d1h80a_	464	iota-carrageenase {Alteromonas sp., atcc 43554 [Ta	98.93
d1ogmx2	373	Dextranase, catalytic domain {Penicillium miniolut	98.64
d1hg8a_	349	Polygalacturonase {Fusarium moniliforme [TaxId: 11	97.92
d1czfa_	335	Polygalacturonase {Fungus (Aspergillus niger), end	97.87
d1nhca_	336	Polygalacturonase {Fungus (Aspergillus niger), end	96.96
d1ia5a_	339	Polygalacturonase {Fungus (Aspergillus aculeatus)	96.53
d1k5ca_	333	Polygalacturonase {Fungus (Stereum purpureum), end	93.41
d1ofla_	481	Chondroitinase B {Pedobacter heparinus [TaxId: 984	93.18
d1ru4a_	400	Pectate transeliminase {Erwinia chrysanthemi [TaxI	85.24

>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=99.55  E-value=2.6e-15  Score=128.82  Aligned_cols=67  Identities=18%  Similarity=0.265  Sum_probs=54.0

Q ss_pred             CCeeEEeeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEE-EeeeEECCCeEEEEcCCcEEEc
Q 044614           78 RKVAMSIKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWL-TGSFNLTSNFTLFLERGAVMLG  149 (151)
Q Consensus        78 ~~~~~nV~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYl-tg~L~LkSnvtL~l~~GAvIlg  149 (151)
                      ..+++||+||||+|||++|||+|||+||++|..     |++|+||+|+|+ .+++.|+.+..+.++-..+|.+
T Consensus        17 ~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~ac~~-----gg~V~iP~Gty~l~~~i~l~g~~~~~l~~~G~i~~   84 (422)
T d1rmga_          17 ATKTCNILSYGAVADNSTDVGPAITSAWAACKS-----GGLVYIPSGNYALNTWVTLTGGSATAIQLDGIIYR   84 (422)
T ss_dssp             HHCEEEGGGGTCCCSSSSBCHHHHHHHHHHHTB-----TCEEEECSSEEEECSCEEEESCEEEEEEECSEEEE
T ss_pred             CCcEEEEecCCCCCCCCccCHHHHHHHHHhcCC-----CCEEEECCCcEEEeCcEEEcCCCceEEEEeEEEEe
Confidence            346999999999999999999999999998853     789999999996 5679996655554444446654

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=99.45  E-value=1.9e-14  Score=121.02  Aligned_cols=55  Identities=20%  Similarity=0.479  Sum_probs=49.9

Q ss_pred             CCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCe---EEEeeeEECCCeEEEEcCCcEEEcCC
Q 044614           92 DGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGL---WLTGSFNLTSNFTLFLERGAVMLGSQ  151 (151)
Q Consensus        92 DG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGt---Yltg~L~LkSnvtL~l~~GAvIlgS~  151 (151)
                      ++.+|||+|||+|||+|..     |++|+||+|+   |++|+|+|+||++|++++||+|+||.
T Consensus        20 ~~~~~~T~aIq~AIdac~~-----Gg~V~iP~G~~~vyltg~i~LkSnv~L~l~~ga~L~~s~   77 (376)
T d1bhea_          20 ADSSTATSTIQKALNNCDQ-----GKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRAVN   77 (376)
T ss_dssp             CCSSBCHHHHHHHHTTCCT-----TCEEEEECSSSSEEEESCEECCTTCEEEECTTCEEEECS
T ss_pred             CCCChhHHHHHHHHHHCCC-----CCEEEEcCCCcceEEEecEEECCCCEEEEeCCEEEEEcC
Confidence            4667999999999998843     7799999997   89999999999999999999999973

>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: iota-carrageenase
domain: iota-carrageenase
species: Alteromonas sp., atcc 43554 [TaxId: 232]

Probab=98.93  E-value=1.2e-09  Score=93.41  Aligned_cols=72  Identities=21%  Similarity=0.451  Sum_probs=65.4

Q ss_pred             CCCCCeeEE-eeecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEECCCeEEEEcCCcEEE
Q 044614           75 LPERKVAMS-IKDFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVML  148 (151)
Q Consensus        75 ~~~~~~~~n-V~dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~LkSnvtL~l~~GAvIl  148 (151)
                      |..+..-+| |.|||+.++...|||.++|.||+++++  ..+||+|.+|.|+|....|.++||++|.+|++.+|.
T Consensus        15 p~q~~~~~~lv~d~g~n~nDt~dDs~~L~~Ain~~sr--~~~GG~l~lp~g~y~l~~I~m~SNVhievE~~~viy   87 (464)
T d1h80a_          15 PTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISR--KPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVIIK   87 (464)
T ss_dssp             CSCCSEEEEHHHHHCCCTTSSSBCHHHHHHHHHHHHT--STTCEEEEECSSEEEECSEECCTTEEEEECTTCEEE
T ss_pred             cchhhccccchhhcccCCCcccCcHHHHHHHHHHhhc--CCCCcEEEEeCCcEEEEEEeeccceEEEEecCeEEe
Confidence            556677777 579999999999999999999999987  478999999999999999999999999999999886

>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

Probab=98.64  E-value=1.5e-10  Score=96.72  Aligned_cols=51  Identities=14%  Similarity=0.041  Sum_probs=41.0

Q ss_pred             ecCccCCCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEECCCeE
Q 044614           86 DFGGVGDGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFT  138 (151)
Q Consensus        86 dFGA~gDG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~LkSnvt  138 (151)
                      .|||++++.+|||+|||.|+..++.  ..++++||||+|+|+++++.++++++
T Consensus         2 ~~ga~p~~~~d~t~a~~~a~~~~~~--~~~~~vvy~PpG~y~~g~~~~~~~~~   52 (373)
T d1ogmx2           2 PSGMIPHMTPDNTQTMTPGPINNGD--WGAKSILYFPPGVYWMNQDQSGNSGK   52 (373)
T ss_dssp             CGGGSCCCCTTTEEECCSEEECTTT--TCSSSEEEECSEEEEECBCTTCCBSC
T ss_pred             CCCccCCCCCCchHHhhhhhhhhcc--cCCCCEEEECCceeEeCCeeecCceE
Confidence            5899999999999999999644433  15689999999999998876655443

>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fusarium moniliforme [TaxId: 117187]

Probab=97.92  E-value=8.7e-07  Score=73.18  Aligned_cols=51  Identities=20%  Similarity=0.228  Sum_probs=42.1

Q ss_pred             chhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEECCCeEEEEcCCcEEEcC
Q 044614           95 TSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLERGAVMLGS  150 (151)
Q Consensus        95 tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~LkSnvtL~l~~GAvIlgS  150 (151)
                      .+|+.|+|+|+++|.+   .++++|+||+|+|+... .|+++++|+++ |++..++
T Consensus         5 i~d~~ai~~ai~~C~~---~~~~~v~vPaG~~l~~~-~l~~~~tl~~~-g~~~~~~   55 (349)
T d1hg8a_           5 VTEYSGLATAVSSCKN---IVLNGFQVPTGKQLDLS-SLQNDSTVTFK-GTTTFAT   55 (349)
T ss_dssp             ESSGGGHHHHHHHCSE---EEECCCEECTTCCEEET-TCCTTCEEEEC-SEEEECC
T ss_pred             cCCHHHHHHHHHHccC---CCCCeEEECCCceEeCC-CCCCCCEEEEE-eeEEeec
Confidence            3688999999999987   78899999999998533 36899999986 7777654

>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]

Probab=97.87  E-value=1.1e-06  Score=72.43  Aligned_cols=48  Identities=29%  Similarity=0.188  Sum_probs=37.2

Q ss_pred             CCcchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEECCCeEEEEc
Q 044614           92 DGTTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLE  142 (151)
Q Consensus        92 DG~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~LkSnvtL~l~  142 (151)
                      ||.||+|+||.+||.++++  ..++++|+||+|+|+..+- +.++++|.++
T Consensus         1 dg~t~~t~a~~~a~~~aC~--~~~~~~v~VP~G~~l~l~~-l~~g~~~~~~   48 (335)
T d1czfa_           1 DSCTFTTAAAAKAGKAKCS--TITLNNIEVPAGTTLDLTG-LTSGTKVIFE   48 (335)
T ss_dssp             CEEEESSHHHHHHHGGGCS--EEEEESCEECTTCCEEECS-CCTTCEEEEE
T ss_pred             CCcccchHHHHHHHHHHCC--CCCCCeEEECCCCEEeccc-CCCCCEEEEE
Confidence            7899999999999875543  1678999999999984321 5677777765

>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]

Probab=96.96  E-value=6.2e-05  Score=61.90  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=34.0

Q ss_pred             chhHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEECCCeEEEEc
Q 044614           95 TSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLE  142 (151)
Q Consensus        95 tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~LkSnvtL~l~  142 (151)
                      .+|+.|+|+||++|.+   .++++|+||+|+|+... .+..+.++.++
T Consensus         5 ~~~~~~i~~ai~~C~~---~~~~~v~VP~G~~l~l~-~~~~g~~v~~~   48 (336)
T d1nhca_           5 FTSASEASESISSCSD---VVLSSIEVPAGETLDLS-DAADGSTITFE   48 (336)
T ss_dssp             ESSHHHHHHHGGGCSE---EEEESCEECTTCCEECT-TCCTTCEEEEE
T ss_pred             cCcHHHHHHHHHHCcC---CCCCeEEECCCCeEeCC-CCCCCCEEEEE
Confidence            3689999999999987   78899999999987422 13456666665

>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=96.53  E-value=0.00017  Score=59.29  Aligned_cols=31  Identities=16%  Similarity=0.113  Sum_probs=28.0

Q ss_pred             cchhHHHHHHHHHHhHcCCCCCCcEEEecCCeEE
Q 044614           94 TTSNTEAFRKAVRYMQGFGDKGGAQLNVPEGLWL  127 (151)
Q Consensus        94 ~tDdT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYl  127 (151)
                      .+||..++++|+++|..   .++++|+||+|+|+
T Consensus         8 g~d~~~~i~~a~~~C~~---~~~~~v~vPaG~~l   38 (339)
T d1ia5a_           8 GSNGASSASKSKTSCST---IVLSNVAVPSGTTL   38 (339)
T ss_dssp             GGGHHHHHHHHGGGCSE---EEEESCEECTTCCE
T ss_pred             CcccHHHHHHHHHhCcC---CCCCeEEECCCCeE
Confidence            47999999999999987   68899999999977

>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]

Probab=93.41  E-value=0.0031  Score=51.75  Aligned_cols=39  Identities=18%  Similarity=0.084  Sum_probs=26.8

Q ss_pred             HHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEECCCeEEEEc
Q 044614           99 EAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNLTSNFTLFLE  142 (151)
Q Consensus        99 ~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~LkSnvtL~l~  142 (151)
                      .+.+.|+++|.+   .++++|+||+|+|+.  |++.++.+|.++
T Consensus         6 ~~~a~~i~~Cs~---~~~~~v~VPaG~~l~--L~~~~g~~v~f~   44 (333)
T d1k5ca_           6 VDDAKDIAGCSA---VTLNGFTVPAGNTLV--LNPDKGATVTMA   44 (333)
T ss_dssp             TTGGGGCTTCSE---EEECCEEECTTCCEE--ECCCTTCEEEEC
T ss_pred             hHhhhhHhhCcC---CCCCeEEECCCCEEE--EecccCCEEEEe
Confidence            344566677876   688999999999873  334555555553

>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Chondroitinase B
domain: Chondroitinase B
species: Pedobacter heparinus [TaxId: 984]

Probab=93.18  E-value=0.047  Score=44.08  Aligned_cols=32  Identities=13%  Similarity=0.331  Sum_probs=26.1

Q ss_pred             hHHHHHHHHHHhHcCCCCCCcEEEecCCeEEEeeeEE
Q 044614           97 NTEAFRKAVRYMQGFGDKGGAQLNVPEGLWLTGSFNL  133 (151)
Q Consensus        97 dT~AfQ~AIdaa~~~~~~GGg~V~VPaGtYltg~L~L  133 (151)
                      +.+.||+||+.++.     |.+|+|++|+|.-..+.+
T Consensus         5 ~~~tiq~Ai~~a~p-----GDtI~l~~GtY~~~~i~~   36 (481)
T d1ofla_           5 SNETLYQVVKEVKP-----GGLVQIADGTYKDVQLIV   36 (481)
T ss_dssp             SHHHHHHHHHHCCT-----TCEEEECSEEEETCEEEE
T ss_pred             ChHHHHHHHHhCCC-----CCEEEECCCEEEcCEEEe
Confidence            46789999998865     889999999997545555

>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate transeliminase
domain: Pectate transeliminase
species: Erwinia chrysanthemi [TaxId: 556]

Probab=85.24  E-value=0.31  Score=36.77  Aligned_cols=44  Identities=16%  Similarity=0.271  Sum_probs=29.4

Q ss_pred             CCeeEEeeecCc-cCCCcchhHH--HHHHHHHHhHcCCCCCCcEEEecCCeEE
Q 044614           78 RKVAMSIKDFGG-VGDGTTSNTE--AFRKAVRYMQGFGDKGGAQLNVPEGLWL  127 (151)
Q Consensus        78 ~~~~~nV~dFGA-~gDG~tDdT~--AfQ~AIdaa~~~~~~GGg~V~VPaGtYl  127 (151)
                      .+.++-|..=|. .+||.. +..  -||+|++.+..     |.+|+|.+|+|.
T Consensus        13 ~~~~~YVs~~Gsd~~~Gs~-~~p~~tIq~Ai~~a~~-----GDtI~v~~GtY~   59 (400)
T d1ru4a_          13 TKRIYYVAPNGNSSNNGSS-FNAPMSFSAAMAAVNP-----GELILLKPGTYT   59 (400)
T ss_dssp             CSCEEEECTTCCTTCCSSS-TTSCBCHHHHHHHCCT-----TCEEEECSEEEE
T ss_pred             cCCeEEECCCCcCCCCCCc-cccHHHHHHHHHhCCC-----cCEEEEcCceee
Confidence            345666654343 355543 322  29999998754     789999999996