Citrus Sinensis ID: 044715

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MKVKALVAVKTKLFRPCKKLNQIFKFKLRKSFFIRSLRSRSFPTTKRSKPQKSPSRTRISALLPSFRPPKQWKKMEKLAEEHRSVSENPECDQALFSSPITPVLFPSPITPDYVKACRLSKRDEVEDVEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLFFPEDDEDHANLQTQPK
Secondary Structure (PSIPRED)
cccccHHHHHcccccccHHHHHHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccHHHHHHHHHHccccccEEEHHHHHcccccccccccccccccccHHHHHHHcccccccHHHHHHHccccccccccccHHHHcccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
MKVKALVAVKTKLFRPCKKLNQIFKFKLRKSFFIrslrsrsfpttkrskpqkspsrtrisallpsfrppkqWKKMEKLAEEHrsvsenpecdqalfsspitpvlfpspitpdyvkacrlskrdeVEDVEDACRSFENYLVEMVVeegkvgdltDVEELLYCWknlkcpvfIDLVCRFYGElckdlffpeddedhanlqtqpk
Flexible Loop (DISEMBL)
MKVKALvavktklfrpckklnqifkfklrksffirslrsrsfpttkrskpqkspsrtrisallpsfrppkqWKKMEKLAEEHRSVSENPECDQALFSSPITPVLFPSPITPDYVKACRLSKRDEVEDVEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLFFPEDDEDHANLQTQPK
Low Complexity Region (SEG)
MkvkalvavktklFRPCKKLNQIFKFKLrksffirslrsrsfPTTKRSKPQKSPSRTRISALLPSFRPPKQWKKMEKLAEEHRSVSENPECDQALFSSPITPVLFPSPITPDYVKACRLSKRDEVEDVEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLFFPEDDEDHANLQTQPK
Disordered region (IsUnstruct)
****ALVAVKTKLFRPCKKLNQIFKFKLRKSFFIRSL*********************************************************LFSSPITPVLFPSPITPDYVKACRLSKRDEVEDVEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLFFP**************
Disordered Region (DISOPRED)
******V*VKTKLFRPCKKLNQIFKFKLRKSFFIRS*************************************************************************************************SFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLF****************
Disordered Region (DISEMBL)
MKVKALVAVKTKLFRPCKKLNQIFKFKLRKSFFIRSLRSR*****************RISALLPSFRPPKQWK****************ECDQALFSSPITPVLFPSPITPDYVKACRLSKRDEVEDVEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLFFPEDDED*********
Disordered Region (DISPRO)
*KVKALVAVKTKLFRPCKKLNQIFKFKLRKSFFIRSLRSRS********************LL***************************C*QALFSSPITPVLFPSPITPDYVKACRLS**DEVEDVEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLFF***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKVKALVAVKTKLFRPCKKLNQIFKFKLRKSFFIRSLRSRSFPTTKRSKPQKSPSRTRISALLPSFRPPKQWKKMEKLAEEHRSVSENPECDQALFSSPITPVLFPSPITPDYVKACRLSKRDEVEDVEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLFFPEDDEDHANLQTQPK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
255554469	187	conserved hypothetical protein [Ricinus	0.881	0.951	0.598	1e-51
297745775	187	unnamed protein product [Vitis vinifera]	0.915	0.989	0.535	1e-44
42570337	195	ovate family protein 17 [Arabidopsis tha	0.920	0.953	0.464	2e-35
449463304	184	PREDICTED: uncharacterized protein LOC10	0.896	0.983	0.467	4e-35
357491457	182	hypothetical protein MTR_5g075190 [Medic	0.816	0.906	0.458	1e-34
297826449	195	ATOFP17/OFP17 [Arabidopsis lyrata subsp.	0.920	0.953	0.459	2e-34
449531350	184	PREDICTED: uncharacterized LOC101206169	0.896	0.983	0.463	3e-34
224124752	119	predicted protein [Populus trichocarpa]	0.495	0.840	0.705	7e-33
224145460	160	predicted protein [Populus trichocarpa]	0.737	0.931	0.532	8e-30
125544696	237	hypothetical protein OsI_12440 [Oryza sa	0.485	0.413	0.605	5e-24

>gi|255554469|ref|XP_002518273.1| conserved hypothetical protein [Ricinus communis] gi|223542493|gb|EEF44033.1| conserved hypothetical protein [Ricinus communis]

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 137/197 (69%), Gaps = 19/197 (9%)

Query: 1   MKVKALVAVKTKLFRPCKKLNQIFKFKLRKSFFIRSLRSRSFPTTKRSKPQKSPSRTRIS 60
           MK+KALVA K+KL +PC+KL   F+FK+RK  FIRSLR R+     RSK    P R    
Sbjct: 1   MKMKALVAFKSKLVKPCRKLLLTFRFKIRKPVFIRSLRFRA----SRSKTGTRPVRNWFL 56

Query: 61  ALLPS-FRPPKQWKKMEKLAEEHRSVSENPECDQALFSSPITPVLFPSPITPDYVKACRL 119
            +L S F P KQ ++M +LAE  +SVS+     +          LFPSP+TP Y+ A R 
Sbjct: 57  TVLHSVFCPAKQSREMNRLAE-LKSVSKAEHEKK----------LFPSPLTPAYITASRT 105

Query: 120 SKRDEV---EDVEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCR 176
           + R+     EDVEDACRSFENYLVEM+VEEGKV DL DVEELLYCWKNLKCPVFIDLVCR
Sbjct: 106 AMRESFMGSEDVEDACRSFENYLVEMIVEEGKVRDLMDVEELLYCWKNLKCPVFIDLVCR 165

Query: 177 FYGELCKDLFFPEDDED 193
           FYGELCKDLF PEDD D
Sbjct: 166 FYGELCKDLFLPEDDND 182

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745775|emb|CBI15831.3| unnamed protein product [Vitis vinifera]

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/200 (53%), Positives = 143/200 (71%), Gaps = 15/200 (7%)

Query: 1   MKVKALVAVKTKLFRPCKKLNQIFKFKLRKSFFIRSLRSRSFPTTKRSKPQKSPSRTRIS 60
           MKV+ L+A K+KL  PC+KL  IFKF+ ++ FF+R+L+ R  P  ++S+ +K+P + R +
Sbjct: 1   MKVRTLIAFKSKLLNPCRKLQPIFKFRFKRPFFLRALQVRRRP--RQSETRKTPPKNRFT 58

Query: 61  ALLPSFRPPKQWKKMEKLAEEHRSVSENPECDQALFSSPITPVLFPSPITPDYVKACRLS 120
           ALL  FR  +Q K+M+++  E RS+S+  +  +          LFPSP+TP  +KA    
Sbjct: 59  ALLSLFRFQRQEKEMDRV-RELRSISDAGQERR----------LFPSPLTPASMKAGAAG 107

Query: 121 KR--DEVEDVEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFY 178
           KR     ED+EDACRSFENYLVEM+VEEGKV DL DVEELLYCWKNLKCPVFIDLVCRFY
Sbjct: 108 KRVASGHEDLEDACRSFENYLVEMIVEEGKVRDLMDVEELLYCWKNLKCPVFIDLVCRFY 167

Query: 179 GELCKDLFFPEDDEDHANLQ 198
           GELCKDLF  +++++  + Q
Sbjct: 168 GELCKDLFSTDEEDNEESTQ 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42570337|ref|NP_850144.2| ovate family protein 17 [Arabidopsis thaliana] gi|29725750|gb|AAO89198.1| hypothetical protein [Arabidopsis thaliana] gi|50058905|gb|AAT69197.1| hypothetical protein At2g30395 [Arabidopsis thaliana] gi|330253287|gb|AEC08381.1| ovate family protein 17 [Arabidopsis thaliana]

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/198 (46%), Positives = 118/198 (59%), Gaps = 12/198 (6%)

Query: 1   MKVKA-LVAVKTKLFRPCKKLNQIFKFKLRKSFFIRSLRSRSFPTTKRSKPQKSPSRTRI 59
           M+VKA L+  K+KL + C +   +F+F++++  FIR LR+R      R   Q   S+  I
Sbjct: 1   MRVKATLINFKSKLSKSCNRFVSLFRFRVKRPVFIRPLRARHGNVKPRH--QHHHSKKPI 58

Query: 60  SALLPSFRPPKQWKKMEKLAEEHRSVSENPECDQALFSSPITPV----LFPSPITPDYVK 115
            + L  F    +  KM        S S N +       SP+TP     LF SPIT  Y  
Sbjct: 59  CSCL-CFLNSSKNHKMSNAKHRSSSFSVNDDDYSKFMQSPLTPATAKKLFTSPITTPYSS 117

Query: 116 ACR--LSKRDEVED--VEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFI 171
             R  L+ RD  ED  VEDACRSFENYL+ ++VEEGK+ DL D+EELL+CWKNLK PVFI
Sbjct: 118 RTRKSLNARDTFEDNAVEDACRSFENYLIHLIVEEGKIDDLMDIEELLFCWKNLKSPVFI 177

Query: 172 DLVCRFYGELCKDLFFPE 189
           +LV RFYGELC+DLF  E
Sbjct: 178 ELVSRFYGELCRDLFSGE 195

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463304|ref|XP_004149374.1| PREDICTED: uncharacterized protein LOC101206169 [Cucumis sativus]

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/203 (46%), Positives = 122/203 (60%), Gaps = 22/203 (10%)

Query: 1   MKVK-ALVAVKTKLFRPCKKLNQIFKFKLRKSFFIRSLRSRSFPTTKRSKPQKSPSRTRI 59
           MKV+  LV+ K+KL +PC KL  +FKF ++K F I+S  +R     + S+    P R   
Sbjct: 1   MKVEVGLVSFKSKLSKPCSKLLHLFKFPMKKPFSIKSFWAR-----RSSRAISKPRRKTW 55

Query: 60  SALLPSFRPPKQWKKMEKLAE--EHRSVSENPECDQALFSSPITPVLFPSPITPDYVKAC 117
           S L    R  ++  KME++ E     SV  + E  + L        LFPSP+     K  
Sbjct: 56  SWL----RWLRRVGKMERVRELKSSESVGSDNESREKL--------LFPSPLIRRRTKVA 103

Query: 118 RLSKRDEVEDVEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRF 177
             +  +E E+VEDACRSFENYLVEM++EEGKV DL DVEELLYCW+ LKCPVF+DLV RF
Sbjct: 104 --ASWEEREEVEDACRSFENYLVEMIIEEGKVRDLMDVEELLYCWRKLKCPVFVDLVSRF 161

Query: 178 YGELCKDLFFPEDDEDHANLQTQ 200
           YGELCKDLF   +     N Q +
Sbjct: 162 YGELCKDLFSSHNQAFTPNFQHK 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491457|ref|XP_003616016.1| hypothetical protein MTR_5g075190 [Medicago truncatula] gi|355517351|gb|AES98974.1| hypothetical protein MTR_5g075190 [Medicago truncatula]

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/203 (45%), Positives = 114/203 (56%), Gaps = 38/203 (18%)

Query: 1   MKVKALVAVKTKLFRPCKKLNQIFKFKLRKSFFIRSLRSRSFPTTKRSKPQK-------- 52
           MKVKAL   K+K  +PCKKL   FK K +K  FIR+ R    P                 
Sbjct: 1   MKVKALSIFKSKFLKPCKKLIFFFKLKPKKLIFIRAFRKAKSPKPSSPSKPMSSLLSVFC 60

Query: 53  SPSRTRISALLPSFRPPKQWKKMEKLAEEHRSVSENPECDQALFSSPITPVLFPSPITPD 112
           SP ++R   +L SF+ P   ++                          TP+ FPSP+TP 
Sbjct: 61  SPKKSRDYNMLQSFKSPSNMQE--------------------------TPI-FPSPLTPA 93

Query: 113 YVKACRL-SKRDEV--EDVEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPV 169
            V+  +    + E   E+VEDACRSFENYL EM+V EGK  DL DVEELLYCWKNLKCPV
Sbjct: 94  CVRKNQTEGSKSEASSEEVEDACRSFENYLAEMIVAEGKTKDLMDVEELLYCWKNLKCPV 153

Query: 170 FIDLVCRFYGELCKDLFFPEDDE 192
           F+DLV RFYGELCKDLF P+++E
Sbjct: 154 FVDLVSRFYGELCKDLFSPDNEE 176

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826449|ref|XP_002881107.1| ATOFP17/OFP17 [Arabidopsis lyrata subsp. lyrata] gi|297326946|gb|EFH57366.1| ATOFP17/OFP17 [Arabidopsis lyrata subsp. lyrata]

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/198 (45%), Positives = 118/198 (59%), Gaps = 12/198 (6%)

Query: 1   MKVKA-LVAVKTKLFRPCKKLNQIFKFKLRKSFFIRSLRSRSFPTTKRSKPQKSPSRTRI 59
           M+VKA L+  K+KL + C +   +F+F++++  FIR LR+R      R +    P +   
Sbjct: 1   MRVKATLINFKSKLSKSCNRFVSLFRFRVKRPVFIRPLRARHGNVKPRHQ-HHHPKKPIC 59

Query: 60  SALLPSFRPPKQWKKMEKLAEEHRSVSENPECDQALFSSPITPV----LFPSPITPDYVK 115
           S L   F    +  KM K      S S N +       SP+TP     LF SPIT  Y  
Sbjct: 60  SCLC--FLSTSKNHKMSKTKPRSSSFSVNDDDYSKFMHSPLTPATAKKLFTSPITTPYSI 117

Query: 116 ACR--LSKRDEVED--VEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFI 171
             R  L+ R+  ED  VEDACRSFENYL+ ++VEEGK+ DL D+EELL+CWKNLK PVFI
Sbjct: 118 RTRKSLNSREAFEDNAVEDACRSFENYLIHLIVEEGKIDDLMDIEELLFCWKNLKSPVFI 177

Query: 172 DLVCRFYGELCKDLFFPE 189
           +LV RFYGELC+DLF  E
Sbjct: 178 ELVSRFYGELCRDLFSGE 195

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531350|ref|XP_004172649.1| PREDICTED: uncharacterized LOC101206169 [Cucumis sativus]

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/203 (46%), Positives = 121/203 (59%), Gaps = 22/203 (10%)

Query: 1   MKVK-ALVAVKTKLFRPCKKLNQIFKFKLRKSFFIRSLRSRSFPTTKRSKPQKSPSRTRI 59
           MKV+  LV+ K+KL +PC KL  +FKF ++K   I+S  +R     + S+    P R   
Sbjct: 1   MKVEVGLVSFKSKLSKPCSKLLHLFKFPMKKPLSIKSFWAR-----RSSRAISKPRRKTW 55

Query: 60  SALLPSFRPPKQWKKMEKLAE--EHRSVSENPECDQALFSSPITPVLFPSPITPDYVKAC 117
           S L    R  ++  KME++ E     SV  + E  + L        LFPSP+     K  
Sbjct: 56  SWL----RWLRRVGKMERVRELKSSESVDSDNESREKL--------LFPSPLIRRRTKVA 103

Query: 118 RLSKRDEVEDVEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRF 177
             +  +E E+VEDACRSFENYLVEM++EEGKV DL DVEELLYCW+ LKCPVF+DLV RF
Sbjct: 104 --ASWEEREEVEDACRSFENYLVEMIIEEGKVRDLMDVEELLYCWRKLKCPVFVDLVSRF 161

Query: 178 YGELCKDLFFPEDDEDHANLQTQ 200
           YGELCKDLF   +     N Q +
Sbjct: 162 YGELCKDLFSSHNQAFTPNFQHK 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124752|ref|XP_002319413.1| predicted protein [Populus trichocarpa] gi|222857789|gb|EEE95336.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 72/102 (70%), Positives = 80/102 (78%), Gaps = 2/102 (1%)

Query: 103 VLFPSPITPDYVKACRLSKRDEV--EDVEDACRSFENYLVEMVVEEGKVGDLTDVEELLY 160
           +L+PSP+TP Y+KA   +KR     EDVEDACRSFENYLVEM+VEEGKV DL DVEELLY
Sbjct: 18  MLYPSPLTPAYIKASLATKRQTFGDEDVEDACRSFENYLVEMMVEEGKVRDLADVEELLY 77

Query: 161 CWKNLKCPVFIDLVCRFYGELCKDLFFPEDDEDHANLQTQPK 202
           CWKNLKCPVFI LVCRFYGELCKDLF P+ D    +    PK
Sbjct: 78  CWKNLKCPVFIGLVCRFYGELCKDLFSPDVDNTDVDSPKSPK 119

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145460|ref|XP_002325650.1| predicted protein [Populus trichocarpa] gi|222862525|gb|EEF00032.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 89/167 (53%), Positives = 118/167 (70%), Gaps = 18/167 (10%)

Query: 3   VKALVAVKTKLFRPCKKLNQIFKFKLRKSFFIRSLRSRSFPTTKRSKPQKSPSRTRI-SA 61
           +KAL   ++KLF PCKKL  +F+FKL++  FIR L+ R     +  KP+K+P + R+ ++
Sbjct: 1   MKALAVFRSKLFSPCKKLLLLFRFKLKRPVFIRGLQLRR----RSKKPRKAPQKNRVFNS 56

Query: 62  LLPSFRPPKQWKKMEKLAEEHRSVSENPECDQALFSSPITPVLFPSPITPDYVKACRLSK 121
           LL  F P ++ +KM++++E  RSVSE PEC++         +LFPSP+TP Y+KA    K
Sbjct: 57  LLSVFHPLRKSRKMDRVSE-LRSVSE-PECER---------MLFPSPLTPAYIKASLEKK 105

Query: 122 RDEV--EDVEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLK 166
           R     EDVEDACRSFENYLVEM+VEEG+V DL DVEELLYCWKNLK
Sbjct: 106 RQTFGDEDVEDACRSFENYLVEMMVEEGQVRDLMDVEELLYCWKNLK 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125544696|gb|EAY90835.1| hypothetical protein OsI_12440 [Oryza sativa Indica Group]

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/104 (60%), Positives = 72/104 (69%), Gaps = 6/104 (5%)

Query: 100 ITPVLFPSPITPDYVK-ACRL-SKRDEVEDVEDACRSFENYLVEMVVEEGKVGDLTDVEE 157
           + PV  PSP TP YVK   RL S+R   E+ E  CRSFE  L+EM++EEGKV DL DVEE
Sbjct: 126 LAPV--PSPETPAYVKMVARLRSRRSGGEEEEGPCRSFEERLMEMLLEEGKVRDLQDVEE 183

Query: 158 LLYCWKNLKCPVFIDLVCRFYGELCKDLFFP--EDDEDHANLQT 199
           LL CW+ LK PVF++LVCRFYGELCKDLF P  ED  D     T
Sbjct: 184 LLRCWERLKSPVFVELVCRFYGELCKDLFSPGEEDGGDEGASST 227

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:504955904	195	OFP17 "AT2G30395" [Arabidopsis	0.851	0.882	0.426	1.3e-29
TAIR|locus:1009023088	170	AT1G06923 [Arabidopsis thalian	0.435	0.517	0.586	1.3e-22

TAIR|locus:504955904 OFP17 "AT2G30395" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 78/183 (42%), Positives = 97/183 (53%)

Query:    15 RPCKKLNQIFKFKLXXXXXXXXXXXXXXPTTKRSKPQKSPSRTRISALLPSFRPPKQWKK 74
             + C +   +F+F++                  R   Q   S+  I + L      K   K
Sbjct:    16 KSCNRFVSLFRFRVKRPVFIRPLRARHGNVKPRH--QHHHSKKPICSCLCFLNSSKN-HK 72

Query:    75 MEKLAEEHRSVSENPECDQALFSSPITPV----LFPSPITPDYVKACR--LSKRDEVED- 127
             M        S S N +       SP+TP     LF SPIT  Y    R  L+ RD  ED 
Sbjct:    73 MSNAKHRSSSFSVNDDDYSKFMQSPLTPATAKKLFTSPITTPYSSRTRKSLNARDTFEDN 132

Query:   128 -VEDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLF 186
              VEDACRSFENYL+ ++VEEGK+ DL D+EELL+CWKNLK PVFI+LV RFYGELC+DLF
Sbjct:   133 AVEDACRSFENYLIHLIVEEGKIDDLMDIEELLFCWKNLKSPVFIELVSRFYGELCRDLF 192

Query:   187 FPE 189
               E
Sbjct:   193 SGE 195

GO:0003674 "molecular_function" evidence=ND

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:1009023088 AT1G06923 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 54/92 (58%), Positives = 67/92 (72%)

Query:   104 LFPSPITPDYVKACRLSKRDEV-ED-VEDACRSFENYLVEMVVEEGKVGDLTDVEELLYC 161
             +FP  +T    KA R S+R  + ED V++ACR FENY++ M VE+GK+ DL D+EELLY 
Sbjct:    81 MFPLAMTQRNKKA-RTSQRHMLKEDGVKEACRRFENYMIHMFVEDGKIDDLMDMEELLYY 139

Query:   162 WKNLKCPVFIDLVCRFYGELCKDLFFPEDDED 193
             WKNL  P+FIDLV RFYGELC DLF P D +D
Sbjct:   140 WKNLNSPIFIDLVTRFYGELCTDLF-PSDHDD 170


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.425    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      202       176   0.00081  109 3  11 22  0.42    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  173 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.42u 0.10s 20.52t   Elapsed:  00:00:02
  Total cpu time:  20.42u 0.10s 20.52t   Elapsed:  00:00:02
  Start:  Fri May 10 07:01:38 2013   End:  Fri May 10 07:01:40 2013

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023953001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (187 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
PF04844	59	Ovate: Transcriptional repressor, ovate; InterPro:	99.72
TIGR01568	66	A_thal_3678 uncharacterized plant-specific domain	99.62

>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length

Probab=99.72  E-value=9.2e-18  Score=119.80  Aligned_cols=58  Identities=31%  Similarity=0.603  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhCC
Q 044715          129 EDACRSFENYLVEMVVEEGKVGDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLFF  187 (202)
Q Consensus       129 edacrsFEn~LvEMivEegkV~dl~DVEELL~cy~~LnSPvf~dLV~rFF~ElC~dlFs  187 (202)
                      .||+.+|+++|+|||+|.| ++++.|+||||+||+.||+|.||.+|.+.|.|+|.++|+
T Consensus         2 ~DP~~DFr~SM~EMI~~~~-i~~~~~LeeLL~cYL~LN~~~~H~~Iv~aF~dv~~~l~s   59 (59)
T PF04844_consen    2 SDPYEDFRESMVEMIEENG-IRDWDDLEELLACYLSLNSPEHHKFIVEAFVDVWVELFS   59 (59)
T ss_pred             CCHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHhC
Confidence            4899999999999999998 999999999999999999999999999999999999986

At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.

>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568

Probab=99.62  E-value=6.6e-16  Score=112.62  Aligned_cols=58  Identities=24%  Similarity=0.444  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCC-CchhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhCC
Q 044715          129 EDACRSFENYLVEMVVEEGKV-GDLTDVEELLYCWKNLKCPVFIDLVCRFYGELCKDLFF  187 (202)
Q Consensus       129 edacrsFEn~LvEMivEegkV-~dl~DVEELL~cy~~LnSPvf~dLV~rFF~ElC~dlFs  187 (202)
                      .||+.+|+++|+|||+|.| + .++.|+||||.||+.||++.+|.+|.+.|.|+|..||+
T Consensus         8 ~DPy~DFr~SM~EMI~~~~-i~~~w~~LeeLL~cYL~LN~~~~H~~Iv~AF~dl~~~L~~   66 (66)
T TIGR01568         8 DDPYEDFRRSMEEMIEERE-LEADWKELEELLACYLDLNPKKSHRFIVRAFVDILSALLS   66 (66)
T ss_pred             CChHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhC
Confidence            5899999999999999998 6 57899999999999999999999999999999999986

This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d2nsza1	129	Programmed cell death 4, PDCD4 {Mouse (Mus musculu	84.18

>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.18  E-value=0.6  Score=33.72  Aligned_cols=27  Identities=26%  Similarity=0.278  Sum_probs=21.4

Q ss_pred             chhhHHHHHHHHhhcCChhHHHHHHHH
Q 044715          151 DLTDVEELLYCWKNLKCPVFIDLVCRF  177 (202)
Q Consensus       151 dl~DVEELL~cy~~LnSPvf~dLV~rF  177 (202)
                      +-.|++|...|+..|++|.||.-+.+-
T Consensus        19 ~~~D~~Ea~~~l~eL~~p~~~~e~V~~   45 (129)
T d2nsza1          19 LSGDISEAEHCLKELEVPHFHHELVYE   45 (129)
T ss_dssp             HHCCHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             hCCCHHHHHHHHHHcCCchhhHHHHHH
Confidence            446999999999999999876655433