Citrus Sinensis ID: 044728

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
Protein Sequence
MDCWSSSFAVVDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKDDAYSKSPPQESGRFSLGNLFRSRSEKFLYNLGLIKSCS
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHcccccEEEEEccccccEEEEEEEccccccHHHHHHHHHHccccEEEEEEEEEEccEEEEEEEEEcccccccccccHHHHHHHHHccccccccccEEEEEEcccccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccEEEEEccccccEEEEEEEEcccccHHHHHHHHHHccccEEEEEEEEEccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHccEEEEEEEEEEcccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHccccEEEEEcccccccEEEEEcccccccHHHHHHHHHHHccEEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccHHcccccccHcccccccEEEEEccccccEEEEEEEccccccHHHHHHHHHHHccEEEEEEEEEcccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEccccccccHHHHHHHHHHHcccEEEEcccccccccccccccccHHHHHHHHHHHHHHccccEEccc
Coil and Loop (DISEMBL)
mdcwsssfavVDEFEKLVlrmnpprvtvdntsnrKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYissdgewfMDVFHVTdqngnklseddVSERIQqslgprarsFRSLRRSVGVQAALEHTTieltgrdrpglLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITseatglpiddpdTLAKIKRLLLYVLKgdrdkrsantavsvdsthKERRLHQMMYAdrdydmnyaesgsasgrskplvtvesctdkgytvvnlrcpdrpklLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRhvdgnpisseAERQRVINCLEAAIKRRTsegislelCCEDRAGLLSDVTRIFRenglsvtraevttrgsqAVNVFYVVdasgnpvkseTIESVRKEIGLTILrvkddaysksppqesgrfslgnlfrSRSEKFLYNLGLIKSCS
Flexible Loop (DISEMBL)
MDCWSSSFAVVDEfeklvlrmnpprvtvdntsnrkatlikvdsankrgsLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQqslgprarsfrslRRSVGvqaalehttieltgrdrpgLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSeatglpiddpdTLAKIKRLLLYVlkgdrdkrsantavsvdsthkerrlHQMMYADRDYDMNYAESgsasgrskplvTVESCTDkgytvvnlrcpdrpKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKrrtsegislelCCEDRAGLLSDVTRIFRenglsvtraevttrgsqavNVFYVVdasgnpvksetiesvrKEIGLTilrvkddaysksppqesgrfslgnlfrsrsekflynlglikscs
Low Complexity Region (SEG)
MDCWSSSFAVVDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKDDAYSKSPPQESGRFSLGNLFRSRSEKFLYNLGLIKSCS
Disordered region (IsUnstruct)
***WSSSFAVVDEFEKLVLRMNPPRVTV*******ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTD********************************VGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKG************************************************LVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVK*******************LFRSRSEKFLYNLGLI****
Disordered Region (DISOPRED)
******SFAVVDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL**************************FRSRSEKFLYNLGLIKSC*
Disordered Region (DISEMBL)
MDCWSSSFAVVDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYA************VTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKDD**********GRFSLGNLFRSRSEKFLYNLGLIKSCS
Disordered Region (DISPRO)
*****SSFAVVDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPR********RSV*VQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKGD***************H*******MMYADRDYD**********GRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKDD***********RFSLGNLFRSRSEKFLYNLGLIKSCS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDCWSSSFAVVDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKDDAYSKSPPQESGRFSLGNLFRSRSEKFLYNLGLIKSCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	450	2.2.26 [Sep-21-2011]
Q65SZ8	875	[Protein-PII] uridylyltra	yes	no	0.362	0.186	0.246	6e-08
P27249	890	[Protein-PII] uridylyltra	N/A	no	0.346	0.175	0.272	1e-07
B1XD36	890	[Protein-PII] uridylyltra	yes	no	0.346	0.175	0.272	1e-07
C4ZRQ9	890	[Protein-PII] uridylyltra	yes	no	0.346	0.175	0.272	1e-07
B2U309	890	[Protein-PII] uridylyltra	yes	no	0.346	0.175	0.272	1e-07
B1IQH4	890	[Protein-PII] uridylyltra	yes	no	0.346	0.175	0.272	1e-07
A4XWU3	899	[Protein-PII] uridylyltra	yes	no	0.326	0.163	0.252	2e-07
P56884	949	[Protein-PII] uridylyltra	yes	no	0.182	0.086	0.383	2e-07
A4VJR9	900	[Protein-PII] uridylyltra	yes	no	0.102	0.051	0.345	2e-07
Q8UIF1	942	[Protein-PII] uridylyltra	yes	no	0.082	0.039	0.382	3e-07

>sp|Q65SZ8|GLND_MANSM [Protein-PII] uridylyltransferase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=glnD PE=3 SV=1

 Score = 59.3 bits (142), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 28/191 (14%)

Query: 241 ASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE-SPEA 299
           A   ++ LV + +    G T V + C DRP L    V  + + +  ++ A +I      A
Sbjct: 680 AGVETELLVKISNRFSAGGTEVFIYCKDRPNLFLKVVAAIGNKKLSIHDAQIITSLDGYA 739

Query: 300 YQEYYIRHVDGNPISSEAER---QRVINCLEA--AIKRRTSEGISL-------------- 340
           +  + +  +DG+ +  +  R   + +IN L +    K + SE   L              
Sbjct: 740 FDSFIVTELDGSLLKFDRRRVLEKAIINSLNSNELTKLQGSENHKLQHFNVKTEVRFLNT 799

Query: 341 --------ELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVK 392
                   EL   D+AGLL+DV+ +F E  LS+  A++TT G +A + F + +A G  + 
Sbjct: 800 EKTTHTEMELFTLDKAGLLADVSLVFSELNLSIQNAKITTIGEKAQDFFILTNAKGEALS 859

Query: 393 SETIESVRKEI 403
               +S+ +++
Sbjct: 860 ERERQSLSEKL 870

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Mannheimia succiniciproducens (strain MBEL55E) (taxid: 221988)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|P27249|GLND_ECOLI [Protein-PII] uridylyltransferase OS=Escherichia coli (strain K12) GN=glnD PE=3 SV=2

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 35/191 (18%)

Query: 245 SKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPE--AYQE 302
           SKPLV +     +G T + +  PDRP  LF AVC   D + +  H   I  + +  A   
Sbjct: 693 SKPLVLLSPQATRGGTEIFIWSPDRP-YLFAAVCAELDRRNLSVHDAQIFTTRDGMAMDT 751

Query: 303 YYIRHVDGNPISSEAERQRVINC-LEAAIKR----------------------------- 332
           + +   DGNP+S  A+R  VI   LE  + +                             
Sbjct: 752 FIVLEPDGNPLS--ADRHEVIRFGLEQVLTQSSWQPPQPRRQPAKLRHFTVETEVTFLPT 809

Query: 333 RTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVK 392
            T     LEL   D+ GLL+ V +IF + G+S+  A +TT G +  ++F +  A    + 
Sbjct: 810 HTDRKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIIATADRRALN 869

Query: 393 SETIESVRKEI 403
           +E  + V + +
Sbjct: 870 NELQQEVHQRL 880

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Escherichia coli (strain K12) (taxid: 83333)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|B1XD36|GLND_ECODH [Protein-PII] uridylyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=glnD PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 35/191 (18%)

Query: 245 SKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPE--AYQE 302
           SKPLV +     +G T + +  PDRP  LF AVC   D + +  H   I  + +  A   
Sbjct: 693 SKPLVLLSPQATRGGTEIFIWSPDRP-YLFAAVCAELDRRNLSVHDAQIFTTRDGMAMDT 751

Query: 303 YYIRHVDGNPISSEAERQRVINC-LEAAIKR----------------------------- 332
           + +   DGNP+S  A+R  VI   LE  + +                             
Sbjct: 752 FIVLEPDGNPLS--ADRHEVIRFGLEQVLTQSSWQPPQPRRQPAKLRHFTVETEVTFLPT 809

Query: 333 RTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVK 392
            T     LEL   D+ GLL+ V +IF + G+S+  A +TT G +  ++F +  A    + 
Sbjct: 810 HTDRKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIIATADRRALN 869

Query: 393 SETIESVRKEI 403
           +E  + V + +
Sbjct: 870 NELQQEVHQRL 880

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Escherichia coli (strain K12 / DH10B) (taxid: 316385)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|C4ZRQ9|GLND_ECOBW [Protein-PII] uridylyltransferase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=glnD PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 35/191 (18%)

Query: 245 SKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPE--AYQE 302
           SKPLV +     +G T + +  PDRP  LF AVC   D + +  H   I  + +  A   
Sbjct: 693 SKPLVLLSPQATRGGTEIFIWSPDRP-YLFAAVCAELDRRNLSVHDAQIFTTRDGMAMDT 751

Query: 303 YYIRHVDGNPISSEAERQRVINC-LEAAIKR----------------------------- 332
           + +   DGNP+S  A+R  VI   LE  + +                             
Sbjct: 752 FIVLEPDGNPLS--ADRHEVIRFGLEQVLTQSSWQPPQPRRQPAKLRHFTVETEVTFLPT 809

Query: 333 RTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVK 392
            T     LEL   D+ GLL+ V +IF + G+S+  A +TT G +  ++F +  A    + 
Sbjct: 810 HTDRKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIIATADRRALN 869

Query: 393 SETIESVRKEI 403
           +E  + V + +
Sbjct: 870 NELQQEVHQRL 880

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Escherichia coli (strain K12 / MC4100 / BW2952) (taxid: 595496)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|B2U309|GLND_SHIB3 [Protein-PII] uridylyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=glnD PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 35/191 (18%)

Query: 245 SKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPE--AYQE 302
           SKPLV +     +G T + +  PDRP  LF AVC   D + +  H   I  + +  A   
Sbjct: 693 SKPLVLLSPQATRGGTEIFIWSPDRP-YLFAAVCAELDRRNLSVHDAQIFTTRDGMAMDT 751

Query: 303 YYIRHVDGNPISSEAERQRVINC-LEAAIKR----------------------------- 332
           + +   DGNP+S  A+R  VI   LE  + +                             
Sbjct: 752 FIVLEPDGNPLS--ADRHEVIRFGLEQVLTQSSWQPPQPRRQPAKLRHFTVETEVTFLPT 809

Query: 333 RTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVK 392
            T     LEL   D+ GLL+ V +IF + G+S+  A +TT G +  ++F +  A    + 
Sbjct: 810 HTDRKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIIATADRRALN 869

Query: 393 SETIESVRKEI 403
           +E  + V + +
Sbjct: 870 NELQQEVHQRL 880

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) (taxid: 344609)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|B1IQH4|GLND_ECOLC [Protein-PII] uridylyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=glnD PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 35/191 (18%)

Query: 245 SKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPE--AYQE 302
           SKPLV +     +G T + +  PDRP  LF AVC   D + +  H   I  + +  A   
Sbjct: 693 SKPLVLLSPQATRGGTEIFIWSPDRP-YLFAAVCAELDRRNLSVHDAQIFTTRDGMAMDT 751

Query: 303 YYIRHVDGNPISSEAERQRVINC-LEAAIKR----------------------------- 332
           + +   DGNP+S  A+R  VI   LE  + +                             
Sbjct: 752 FIVLEPDGNPLS--ADRHEVIRFGLEQVLTQSSWQPPQPRRQPAKLRHFTVETEVTFLPT 809

Query: 333 RTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVK 392
            T     LEL   D+ GLL+ V +IF + G+S+  A +TT G +  ++F +  A    + 
Sbjct: 810 HTDRKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIIATADRRALN 869

Query: 393 SETIESVRKEI 403
           +E  + V + +
Sbjct: 870 NELQQEVHQRL 880

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) (taxid: 481805)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A4XWU3|GLND_PSEMY [Protein-PII] uridylyltransferase OS=Pseudomonas mendocina (strain ymp) GN=glnD PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 35/182 (19%)

Query: 245 SKPLVTVESCTDK---GYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPE-AY 300
           S PLV ++  T +   G T + +  PD+       V  ++ +   ++ A +I  + +   
Sbjct: 687 SGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSTSQFTL 746

Query: 301 QEYYIRHVDG-----NPISSEAERQRVINCLE------AAIKRRTSEGIS---------- 339
             Y +   DG     NP   +  R+ +I  L+        I+RR    +           
Sbjct: 747 DTYVVLDADGGSIGDNPARIKQIREGLIEALKNPDEYPTIIQRRVPRQLKHFAFAPQVTI 806

Query: 340 ----------LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGN 389
                     LEL   DR GLL+ + RIF E  LS+  A++ T G +  +VF+V DA+  
Sbjct: 807 HNDAQRPVTILELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVTDANNQ 866

Query: 390 PV 391
           P+
Sbjct: 867 PL 868

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas mendocina (strain ymp) (taxid: 399739)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain 1021) GN=glnD PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 4/86 (4%)

Query: 24  PRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVT 83
           P VT+ NT + K T+I+V+  ++ G L E+  VL+DL L I  A+I++ GE  +D F+VT
Sbjct: 831 PEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVT 890

Query: 84  DQNGNKLSEDDVSERIQQSLGPRARS 109
           D  G+K++    SE  Q ++  R ++
Sbjct: 891 DLVGSKIT----SENRQMNIAARLKA 912

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium meliloti (strain 1021) (taxid: 266834)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A4VJR9|GLND_PSEU5 [Protein-PII] uridylyltransferase OS=Pseudomonas stutzeri (strain A1501) GN=glnD PE=3 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 50/81 (61%)

Query: 23  PPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHV 82
           PP+VT+ N + R  T++++ + ++ G L  + Q+  D DL ++ A I++ GE   DVF V
Sbjct: 801 PPQVTIHNDTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFV 860

Query: 83  TDQNGNKLSEDDVSERIQQSL 103
           TD +   LS+  +  R+QQ++
Sbjct: 861 TDADNQPLSDPQLCLRLQQAI 881

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas stutzeri (strain A1501) (taxid: 379731)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glnD PE=3 SV=1

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 48/81 (59%)

Query: 23  PPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHV 82
           PP VT+ N  + K T+I+V+  ++ G L ++  V+ DL L I  A I++ GE  +D F+V
Sbjct: 826 PPSVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYV 885

Query: 83  TDQNGNKLSEDDVSERIQQSL 103
           TD  G K++ D+    I Q L
Sbjct: 886 TDLFGQKVTNDNRQASIAQRL 906

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Agrobacterium tumefaciens (strain C58 / ATCC 33970) (taxid: 176299)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
225425204	447	PREDICTED: uncharacterized protein LOC10	0.993	1.0	0.877	0.0
147855097	465	hypothetical protein VITISV_001862 [Viti	0.966	0.935	0.883	0.0
255547636	450	amino acid binding protein, putative [Ri	1.0	1.0	0.853	0.0
449445562	451	PREDICTED: uncharacterized protein LOC10	1.0	0.997	0.869	0.0
224053525	448	predicted protein [Populus trichocarpa]	0.995	1.0	0.853	0.0
449468820	449	PREDICTED: uncharacterized protein LOC10	0.995	0.997	0.824	0.0
449484676	449	PREDICTED: uncharacterized LOC101215960	0.995	0.997	0.822	0.0
356568931	450	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.828	0.0
224075527	448	predicted protein [Populus trichocarpa]	0.995	1.0	0.822	0.0
357502937	451	hypothetical protein MTR_7g022470 [Medic	1.0	0.997	0.798	0.0

>gi|225425204|ref|XP_002266641.1| PREDICTED: uncharacterized protein LOC100250497 [Vitis vinifera] gi|296088702|emb|CBI38152.3| unnamed protein product [Vitis vinifera]

 Score =  809 bits (2090), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/450 (87%), Positives = 417/450 (92%), Gaps = 3/450 (0%)

Query: 1   MDCWSSSFAVVDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDL 60
           MDCWS S  V DEFEKLV+RMNPPRVTVDN S+R ATLIKVDSAN+RGSLLE+VQVLND+
Sbjct: 1   MDCWSPSLTVDDEFEKLVIRMNPPRVTVDNASSRTATLIKVDSANRRGSLLEVVQVLNDM 60

Query: 61  DLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQ 120
           DLIIRRAYISSDGEWFMDVFHVTDQ GNKLSEDDV+ERIQQSLGPRARSFRSLRRSVGVQ
Sbjct: 61  DLIIRRAYISSDGEWFMDVFHVTDQKGNKLSEDDVAERIQQSLGPRARSFRSLRRSVGVQ 120

Query: 121 AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPI 180
           AA EHTTIELTGRDRPGLLSEVFAVL+DLKCNV+ AEVWTHNSRMASVVYIT + TGLPI
Sbjct: 121 AANEHTTIELTGRDRPGLLSEVFAVLADLKCNVVAAEVWTHNSRMASVVYITDDETGLPI 180

Query: 181 DDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGS 240
           DDPD L KIK+LLLYVLKGDRDKRSANTAVSV ST+ +RRLHQMMYADRDYDM   +SGS
Sbjct: 181 DDPDRLVKIKQLLLYVLKGDRDKRSANTAVSVGSTNTQRRLHQMMYADRDYDM---DSGS 237

Query: 241 ASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAY 300
            + RSKPLVTVE+  DKGYTVVNLRCPDRPKLLFD VCTLTDMQYVV+HATVIAE PEAY
Sbjct: 238 TNDRSKPLVTVENFADKGYTVVNLRCPDRPKLLFDTVCTLTDMQYVVFHATVIAEGPEAY 297

Query: 301 QEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRE 360
           QEYYIRHVDG PISSEAE+QRVI CLEAAI+RRTSEGI LELC EDR GLLSDVTRIFRE
Sbjct: 298 QEYYIRHVDGCPISSEAEQQRVILCLEAAIRRRTSEGIRLELCSEDRVGLLSDVTRIFRE 357

Query: 361 NGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKDDAYSKSPP 420
           NGLSVTRAEVTTRGSQAVN FYV D+SGNPVKSETIE+VRKEIGLTILRVKDDAYSKSPP
Sbjct: 358 NGLSVTRAEVTTRGSQAVNAFYVTDSSGNPVKSETIEAVRKEIGLTILRVKDDAYSKSPP 417

Query: 421 QESGRFSLGNLFRSRSEKFLYNLGLIKSCS 450
           QESGRFSLGNLFRSRSEK LYNLGL++S S
Sbjct: 418 QESGRFSLGNLFRSRSEKVLYNLGLMRSYS 447

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855097|emb|CAN83845.1| hypothetical protein VITISV_001862 [Vitis vinifera]

 Score =  793 bits (2048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/438 (88%), Positives = 407/438 (92%), Gaps = 3/438 (0%)

Query: 1   MDCWSSSFAVVDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDL 60
           MDCWS S  V DEFEKLV+RMNPPRVTVDN S+R ATLIKVDSAN+RGSLLE+VQVLND+
Sbjct: 1   MDCWSPSLTVDDEFEKLVIRMNPPRVTVDNASSRTATLIKVDSANRRGSLLEVVQVLNDM 60

Query: 61  DLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQ 120
           DLIIRRAYISSDGEWFMDVFHVTDQ GNKLSEDDV+ERIQQSLGPRARSFRSLRRSVGVQ
Sbjct: 61  DLIIRRAYISSDGEWFMDVFHVTDQKGNKLSEDDVAERIQQSLGPRARSFRSLRRSVGVQ 120

Query: 121 AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPI 180
           AA EHTTIELTGRDRPGLLSEVFAVL+DLKCNV+ AEVWTHNSRMASVVYIT + TGLPI
Sbjct: 121 AANEHTTIELTGRDRPGLLSEVFAVLADLKCNVVAAEVWTHNSRMASVVYITDDETGLPI 180

Query: 181 DDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGS 240
           DDPD L KIK+LLLYVLKGDRDKRSANTAVSV ST+ +RRLHQMMYADRDYDM   +SGS
Sbjct: 181 DDPDRLVKIKQLLLYVLKGDRDKRSANTAVSVGSTNTQRRLHQMMYADRDYDM---DSGS 237

Query: 241 ASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAY 300
            + RSKPLVTVE+  DKGYTVVNLRCPDRPKLLFD VCTLTDMQYVV+HATVIAE PEAY
Sbjct: 238 TNDRSKPLVTVENFADKGYTVVNLRCPDRPKLLFDTVCTLTDMQYVVFHATVIAEGPEAY 297

Query: 301 QEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRE 360
           QEYYIRHVDG PISSEAE+QRVI CLEAAI+RRTSEGI LELC EDR GLLSDVTRIFRE
Sbjct: 298 QEYYIRHVDGCPISSEAEQQRVILCLEAAIRRRTSEGIRLELCSEDRVGLLSDVTRIFRE 357

Query: 361 NGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKDDAYSKSPP 420
           NGLSVTRAEVTTRGSQAVN FYV D+SGNPVKSETIE+VRKEIGLTILRVKDDAYSKSPP
Sbjct: 358 NGLSVTRAEVTTRGSQAVNAFYVTDSSGNPVKSETIEAVRKEIGLTILRVKDDAYSKSPP 417

Query: 421 QESGRFSLGNLFRSRSEK 438
           QESGRFSLGNLFRSRSEK
Sbjct: 418 QESGRFSLGNLFRSRSEK 435

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547636|ref|XP_002514875.1| amino acid binding protein, putative [Ricinus communis] gi|223545926|gb|EEF47429.1| amino acid binding protein, putative [Ricinus communis]

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/450 (85%), Positives = 410/450 (91%)

Query: 1   MDCWSSSFAVVDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDL 60
           MDCWS S  + DEFEKLV+RMNPPRVTVDN ++RKATLIKVDSANKRGSLLE+VQVL DL
Sbjct: 1   MDCWSPSVTMDDEFEKLVIRMNPPRVTVDNATSRKATLIKVDSANKRGSLLEVVQVLTDL 60

Query: 61  DLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQ 120
           DL+IRRAYISSDGEWFMDVFHVTDQ+GNKLSEDDV+ERIQQSLGPRA SFRSLRRSVGVQ
Sbjct: 61  DLLIRRAYISSDGEWFMDVFHVTDQHGNKLSEDDVAERIQQSLGPRACSFRSLRRSVGVQ 120

Query: 121 AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPI 180
            A E+TTIELTGRDRPGLLSEVFAVL+DLKCNV+ AEVWTHNSRMASVVYIT E TG PI
Sbjct: 121 TASENTTIELTGRDRPGLLSEVFAVLADLKCNVVAAEVWTHNSRMASVVYITDEVTGSPI 180

Query: 181 DDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGS 240
           ++PD L KIK+LLLYVLKGDRDKRSANTAVSV STHKERRLHQMMYADRDYD++  E GS
Sbjct: 181 NEPDRLTKIKQLLLYVLKGDRDKRSANTAVSVGSTHKERRLHQMMYADRDYDIDDGEGGS 240

Query: 241 ASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAY 300
            S R KPLVTVE+C DKGYTVVNLRCPDRPKLLFD VCTLTDMQYVVYHAT+IAE PEAY
Sbjct: 241 TSERRKPLVTVENCADKGYTVVNLRCPDRPKLLFDTVCTLTDMQYVVYHATIIAEGPEAY 300

Query: 301 QEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRE 360
           QEYYIRH+DG+PISSEAERQRVINCLEAAI+RR  EGI LELC EDR GLLS+VTRIFRE
Sbjct: 301 QEYYIRHMDGSPISSEAERQRVINCLEAAIRRRNPEGIRLELCSEDRIGLLSEVTRIFRE 360

Query: 361 NGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKDDAYSKSPP 420
           NGLSVTRAEVTTR SQAVN FYV DASG PVKSETIE+VRKEIGLTILRVKDD+ S  P 
Sbjct: 361 NGLSVTRAEVTTRDSQAVNAFYVTDASGYPVKSETIEAVRKEIGLTILRVKDDSNSPPPQ 420

Query: 421 QESGRFSLGNLFRSRSEKFLYNLGLIKSCS 450
           +E GRFSLGN+FRSRSEKFLYNLGLIKS S
Sbjct: 421 EERGRFSLGNIFRSRSEKFLYNLGLIKSYS 450

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445562|ref|XP_004140541.1| PREDICTED: uncharacterized protein LOC101218687 [Cucumis sativus] gi|449526489|ref|XP_004170246.1| PREDICTED: uncharacterized LOC101218687 [Cucumis sativus]

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/451 (86%), Positives = 413/451 (91%), Gaps = 1/451 (0%)

Query: 1   MDCWSSSFAVVDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDL 60
           MDCWS S  + DEFEKLV RMNPPRVTVDN S+RKATLIKVDSANKRGSLLE+VQVLNDL
Sbjct: 1   MDCWSLSLPLDDEFEKLVNRMNPPRVTVDNDSSRKATLIKVDSANKRGSLLEVVQVLNDL 60

Query: 61  DLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQ 120
           +LIIRRAYISSDGEWFMDVFHVTDQ GNKLSE+DV+ERIQQSLGPR RSFRSLRRSVGVQ
Sbjct: 61  NLIIRRAYISSDGEWFMDVFHVTDQRGNKLSENDVAERIQQSLGPRGRSFRSLRRSVGVQ 120

Query: 121 AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPI 180
           AA EHTTIELTGRDRPGLLSEVFAVL+DLKCNV+ AEVWTHNSRMASVVYIT EATG PI
Sbjct: 121 AAEEHTTIELTGRDRPGLLSEVFAVLADLKCNVVAAEVWTHNSRMASVVYITDEATGFPI 180

Query: 181 DDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGS 240
           DDPD L KIK+LLL+VLKGDRDKRSANTAVSV STHKERRLHQMMYADRDYD +  + GS
Sbjct: 181 DDPDRLGKIKQLLLFVLKGDRDKRSANTAVSVGSTHKERRLHQMMYADRDYDQDDLDCGS 240

Query: 241 ASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAY 300
            S R KPLVTVESC DKGYTVVNLR PDRPKLLFD VCTLTDMQYVVYHATVIAE PEA 
Sbjct: 241 TSERRKPLVTVESCADKGYTVVNLRSPDRPKLLFDTVCTLTDMQYVVYHATVIAEGPEAT 300

Query: 301 QEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRE 360
           QEYYIRH+DG+PISSEAERQRVI+CLEAAI+RRTSEGI LELC +DRAGLLSDVTRIFRE
Sbjct: 301 QEYYIRHMDGSPISSEAERQRVIHCLEAAIRRRTSEGIRLELCSDDRAGLLSDVTRIFRE 360

Query: 361 NGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKDDAYS-KSP 419
           NGLSVTRAEVTTRG+QAVNVFYV DASGNPVKSE IE+VRKEIGLT+L VKDD +  KSP
Sbjct: 361 NGLSVTRAEVTTRGTQAVNVFYVTDASGNPVKSEMIEAVRKEIGLTVLCVKDDEFCMKSP 420

Query: 420 PQESGRFSLGNLFRSRSEKFLYNLGLIKSCS 450
             ES RFSLGNLFRSRSEKFLYNLGLIKSCS
Sbjct: 421 SPESSRFSLGNLFRSRSEKFLYNLGLIKSCS 451

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053525|ref|XP_002297856.1| predicted protein [Populus trichocarpa] gi|118487724|gb|ABK95686.1| unknown [Populus trichocarpa] gi|222845114|gb|EEE82661.1| predicted protein [Populus trichocarpa]

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/450 (85%), Positives = 416/450 (92%), Gaps = 2/450 (0%)

Query: 1   MDCWSSSFAVVDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDL 60
           MDCWS      DEFEKLV+RMNPPRVTVDN S+RKATLIKVDSANKRGSLLE+VQVL DL
Sbjct: 1   MDCWSP-LTTDDEFEKLVIRMNPPRVTVDNASSRKATLIKVDSANKRGSLLEVVQVLTDL 59

Query: 61  DLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQ 120
           +LIIRRAYISSDGEWFMDVF+VTDQ+GNKLSEDDV+ERIQQSLGPR RSFRSLRRSVGVQ
Sbjct: 60  NLIIRRAYISSDGEWFMDVFYVTDQHGNKLSEDDVAERIQQSLGPRGRSFRSLRRSVGVQ 119

Query: 121 AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPI 180
           AA E+TTIELTGRDRPGLLSE+FA+L+DLKCNV+ +EVWTHNSRMASVVYIT EATGLPI
Sbjct: 120 AAAENTTIELTGRDRPGLLSEIFAILTDLKCNVVASEVWTHNSRMASVVYITDEATGLPI 179

Query: 181 DDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGS 240
           DDPD L KIK+LLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDM+ A+ GS
Sbjct: 180 DDPDRLTKIKQLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMDDADFGS 239

Query: 241 ASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAY 300
           AS R KP VT+E+C DKGYT+VNLRCPDRPKLLFD VCTLTDMQYVVYH T+IAE PEA 
Sbjct: 240 ASER-KPFVTLENCVDKGYTIVNLRCPDRPKLLFDTVCTLTDMQYVVYHGTIIAEGPEAC 298

Query: 301 QEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRE 360
           QEY+IRH+DG+P+SSEAERQRVINCLEAAI+RRTSEG+ LELC EDR GLLSDVTRIFRE
Sbjct: 299 QEYFIRHMDGSPVSSEAERQRVINCLEAAIRRRTSEGVRLELCSEDRVGLLSDVTRIFRE 358

Query: 361 NGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKDDAYSKSPP 420
           NGLSVTRAEVTTRGSQAVNVFYV D+SG PVK+ETIE+VRKEIGLTIL V DDA+SKSPP
Sbjct: 359 NGLSVTRAEVTTRGSQAVNVFYVTDSSGYPVKNETIEAVRKEIGLTILHVNDDAHSKSPP 418

Query: 421 QESGRFSLGNLFRSRSEKFLYNLGLIKSCS 450
           QE G FSLGN+FRSRSEKFLYNLGLI+S S
Sbjct: 419 QERGLFSLGNIFRSRSEKFLYNLGLIRSYS 448

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468820|ref|XP_004152119.1| PREDICTED: uncharacterized protein LOC101215960 [Cucumis sativus]

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/451 (82%), Positives = 411/451 (91%), Gaps = 3/451 (0%)

Query: 1   MDCWSSSFAVVDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDL 60
           MD W+S   V DE++KLV+RMNPPRV++DNTS+RKATLIKVDS+N+ GSLLE+VQVL DL
Sbjct: 1   MDSWAS-LPVHDEYQKLVIRMNPPRVSIDNTSSRKATLIKVDSSNRHGSLLEVVQVLTDL 59

Query: 61  DLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQ 120
           +LIIRRAYISSDGEWFMDVFHVTDQNG KL +D V ERIQQSLGPRARSFRSLRRSVGVQ
Sbjct: 60  NLIIRRAYISSDGEWFMDVFHVTDQNGKKLCDDGVGERIQQSLGPRARSFRSLRRSVGVQ 119

Query: 121 AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPI 180
           AA EHTTIEL+GRDRPGLLSEVFAVL+DLKCNV+ AEVWTHNSRMASVVYIT + +G+PI
Sbjct: 120 AAAEHTTIELSGRDRPGLLSEVFAVLTDLKCNVVAAEVWTHNSRMASVVYITDDTSGMPI 179

Query: 181 DDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGS 240
           DDPD LAKIK+LLLYVLKGDRDK SANTAVS++STHKERRLHQMMYADRD+D+NY  S S
Sbjct: 180 DDPDWLAKIKQLLLYVLKGDRDKHSANTAVSMNSTHKERRLHQMMYADRDFDLNYT-SCS 238

Query: 241 ASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAY 300
            S +S+PLVTVE+C +KGYTVVNLRCPDRPKLLFD VCTLTDMQYVVYHAT+IAE PEAY
Sbjct: 239 ESYQSRPLVTVENCVEKGYTVVNLRCPDRPKLLFDTVCTLTDMQYVVYHATIIAEEPEAY 298

Query: 301 QEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRE 360
           QEY+IRHVDG+PISSEAERQRVI+CLEAAI+RRT+EGI LELC EDR GLL+DVTRIFRE
Sbjct: 299 QEYFIRHVDGSPISSEAERQRVIHCLEAAIRRRTTEGIKLELCSEDRVGLLTDVTRIFRE 358

Query: 361 NGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKDD-AYSKSP 419
           NGLSVTRAEVTTRG+QAVNVFYV DASGN V+SETI++VR+ IGLTIL VKDD   SK P
Sbjct: 359 NGLSVTRAEVTTRGTQAVNVFYVTDASGNSVRSETIKAVREAIGLTILHVKDDEQQSKCP 418

Query: 420 PQESGRFSLGNLFRSRSEKFLYNLGLIKSCS 450
           PQE   FSLGNLFRSRSEK LYNLGLIKSCS
Sbjct: 419 PQEGSGFSLGNLFRSRSEKVLYNLGLIKSCS 449

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484676|ref|XP_004156949.1| PREDICTED: uncharacterized LOC101215960 [Cucumis sativus]

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/451 (82%), Positives = 410/451 (90%), Gaps = 3/451 (0%)

Query: 1   MDCWSSSFAVVDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDL 60
           MD W+S   V DE++KLV+RMNPPRV++DNTS+RKATLIKVDS+N+ GSLLE+VQVL DL
Sbjct: 1   MDSWAS-LPVHDEYQKLVIRMNPPRVSIDNTSSRKATLIKVDSSNRHGSLLEVVQVLTDL 59

Query: 61  DLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQ 120
           +LIIRRAYISSDGEWFMDV HVTDQNG KL +D V ERIQQSLGPRARSFRSLRRSVGVQ
Sbjct: 60  NLIIRRAYISSDGEWFMDVLHVTDQNGKKLCDDGVGERIQQSLGPRARSFRSLRRSVGVQ 119

Query: 121 AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPI 180
           AA EHTTIEL+GRDRPGLLSEVFAVL+DLKCNV+ AEVWTHNSRMASVVYIT + +G+PI
Sbjct: 120 AAAEHTTIELSGRDRPGLLSEVFAVLTDLKCNVVAAEVWTHNSRMASVVYITDDTSGMPI 179

Query: 181 DDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGS 240
           DDPD LAKIK+LLLYVLKGDRDK SANTAVS++STHKERRLHQMMYADRD+D+NY  S S
Sbjct: 180 DDPDWLAKIKQLLLYVLKGDRDKHSANTAVSMNSTHKERRLHQMMYADRDFDLNYT-SCS 238

Query: 241 ASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAY 300
            S +S+PLVTVE+C +KGYTVVNLRCPDRPKLLFD VCTLTDMQYVVYHAT+IAE PEAY
Sbjct: 239 ESYQSRPLVTVENCVEKGYTVVNLRCPDRPKLLFDTVCTLTDMQYVVYHATIIAEEPEAY 298

Query: 301 QEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRE 360
           QEY+IRHVDG+PISSEAERQRVI+CLEAAI+RRT+EGI LELC EDR GLL+DVTRIFRE
Sbjct: 299 QEYFIRHVDGSPISSEAERQRVIHCLEAAIRRRTTEGIKLELCSEDRVGLLTDVTRIFRE 358

Query: 361 NGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKDD-AYSKSP 419
           NGLSVTRAEVTTRG+QAVNVFYV DASGN V+SETI++VR+ IGLTIL VKDD   SK P
Sbjct: 359 NGLSVTRAEVTTRGTQAVNVFYVTDASGNSVRSETIKAVREAIGLTILHVKDDEQQSKCP 418

Query: 420 PQESGRFSLGNLFRSRSEKFLYNLGLIKSCS 450
           PQE   FSLGNLFRSRSEK LYNLGLIKSCS
Sbjct: 419 PQEGSGFSLGNLFRSRSEKVLYNLGLIKSCS 449

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568931|ref|XP_003552661.1| PREDICTED: uncharacterized protein LOC100816426 [Glycine max]

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/450 (82%), Positives = 403/450 (89%)

Query: 1   MDCWSSSFAVVDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDL 60
           MDCW S   + DEFEKLV+RMNPPRV VDN S+   T+IKVDSANKRGSLLE+VQVL D+
Sbjct: 1   MDCWYSPHPLHDEFEKLVIRMNPPRVAVDNISSGTDTVIKVDSANKRGSLLEVVQVLTDM 60

Query: 61  DLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQ 120
           +L +RRAYISSDGEWFMDVFHVTDQNG K  +DDV++RIQQSLGPRA SFRSLRRSVGVQ
Sbjct: 61  NLSVRRAYISSDGEWFMDVFHVTDQNGKKFMQDDVADRIQQSLGPRASSFRSLRRSVGVQ 120

Query: 121 AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPI 180
           A  EHTTIELTGRDRPGLLSEVFAVL+DLKCNV+ AEVWTHNSRMASVVYIT EATGL I
Sbjct: 121 AEAEHTTIELTGRDRPGLLSEVFAVLADLKCNVVAAEVWTHNSRMASVVYITDEATGLSI 180

Query: 181 DDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGS 240
           DDPD LAKIK+LLLYVLKGD DK+SANTAVSV STHK+RRLHQ+MYADRDYD++  +SGS
Sbjct: 181 DDPDRLAKIKQLLLYVLKGDIDKKSANTAVSVGSTHKDRRLHQLMYADRDYDVDDGDSGS 240

Query: 241 ASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAY 300
            S R+K LVTV+ C DKGYTVVNLRCPDRPKLLFD VCTLTDMQYVVYH TVIAE PEAY
Sbjct: 241 TSDRNKLLVTVDDCIDKGYTVVNLRCPDRPKLLFDTVCTLTDMQYVVYHGTVIAEGPEAY 300

Query: 301 QEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRE 360
           QEYYIRHVDG+PISSEAERQRVI+CLEAA++RRTSEGI LELC EDR GLLSDVTRIFRE
Sbjct: 301 QEYYIRHVDGSPISSEAERQRVIHCLEAAVRRRTSEGIKLELCGEDRVGLLSDVTRIFRE 360

Query: 361 NGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKDDAYSKSPP 420
           NGLSV RAEVTTRGSQA+NVFYV D SGNPVKSETIE+VRKEIGLTIL VKDD  SK PP
Sbjct: 361 NGLSVNRAEVTTRGSQAMNVFYVTDVSGNPVKSETIETVRKEIGLTILHVKDDVCSKPPP 420

Query: 421 QESGRFSLGNLFRSRSEKFLYNLGLIKSCS 450
           QESG+FSL NLFRS SEKFLYNLGL+KS S
Sbjct: 421 QESGKFSLSNLFRSSSEKFLYNLGLMKSYS 450

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075527|ref|XP_002304667.1| predicted protein [Populus trichocarpa] gi|222842099|gb|EEE79646.1| predicted protein [Populus trichocarpa]

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/450 (82%), Positives = 408/450 (90%), Gaps = 2/450 (0%)

Query: 1   MDCWSSSFAVVDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDL 60
           MDCWS    + DEFEKLV+RMNPPRVTVDN S+R ATLI+VDSANKRGSLLE+VQVL DL
Sbjct: 1   MDCWSP-LTMDDEFEKLVIRMNPPRVTVDNASSRTATLIEVDSANKRGSLLEVVQVLTDL 59

Query: 61  DLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQ 120
           +L+IRRAYISSDGEWFMDVFHVTDQ+GNKLSEDDV+ERIQQSLGPR  SFRSLRRSV VQ
Sbjct: 60  NLLIRRAYISSDGEWFMDVFHVTDQHGNKLSEDDVAERIQQSLGPRGPSFRSLRRSVDVQ 119

Query: 121 AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPI 180
            A EHTTIELTGRDRPGLLSE+FAVL+ LKCNV+ +E+WTHNSRMASVVYIT EATGLPI
Sbjct: 120 GAAEHTTIELTGRDRPGLLSEIFAVLAGLKCNVVASEIWTHNSRMASVVYITDEATGLPI 179

Query: 181 DDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGS 240
           DDPD L KIK+LLL +L GDRDKRSANTAVSV STHKERRLHQMMYADRDYD++ A+  S
Sbjct: 180 DDPDRLTKIKQLLLCILIGDRDKRSANTAVSVGSTHKERRLHQMMYADRDYDVDDADCSS 239

Query: 241 ASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAY 300
           AS R++  VTVE+C DKGYTVVNLRCPDRPKL+FD VCTLTDMQYVVYHA +IAE PEA 
Sbjct: 240 ASERNR-FVTVENCVDKGYTVVNLRCPDRPKLIFDTVCTLTDMQYVVYHAIIIAEGPEAC 298

Query: 301 QEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRE 360
           QEY+IRH+DG+PI+SEAERQR+INCLEAAI+RRTSEG+ LELC EDR GLLSDVTRIFRE
Sbjct: 299 QEYFIRHMDGSPINSEAERQRLINCLEAAIRRRTSEGVRLELCSEDRVGLLSDVTRIFRE 358

Query: 361 NGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKDDAYSKSPP 420
           NGLSVTRAEVTTRGSQAVNVF+V D+SG+PVKSETIE+VRKEIGLTIL V DDAYSKSPP
Sbjct: 359 NGLSVTRAEVTTRGSQAVNVFFVTDSSGHPVKSETIEAVRKEIGLTILNVNDDAYSKSPP 418

Query: 421 QESGRFSLGNLFRSRSEKFLYNLGLIKSCS 450
           QE G  SLGN+FRS+SEKFLY+LGLIKS S
Sbjct: 419 QERGLLSLGNIFRSKSEKFLYHLGLIKSNS 448

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502937|ref|XP_003621757.1| hypothetical protein MTR_7g022470 [Medicago truncatula] gi|355496772|gb|AES77975.1| hypothetical protein MTR_7g022470 [Medicago truncatula]

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/451 (79%), Positives = 401/451 (88%), Gaps = 1/451 (0%)

Query: 1   MDCWSSSFAVVDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDL 60
           MD W+SS  + DEFEKLV+RMNPPRVTVDNTS+R  TLIKVDSANKRGSLLE+VQVL D+
Sbjct: 1   MDFWTSSLPLDDEFEKLVIRMNPPRVTVDNTSSRTTTLIKVDSANKRGSLLEVVQVLTDM 60

Query: 61  DLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQ 120
           +LI+RRAYISSDG WFMDVFHVTDQNG K+ ++DV++RIQQSLGPR RSFRS+RRSVGVQ
Sbjct: 61  NLIVRRAYISSDGGWFMDVFHVTDQNGKKILQEDVADRIQQSLGPRVRSFRSVRRSVGVQ 120

Query: 121 AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPI 180
           AA EHTTIELTGRDRPGLLSEVFA+L+DLKCNV+ AEVWTHNSRMASVVYIT + TGLPI
Sbjct: 121 AAAEHTTIELTGRDRPGLLSEVFAILADLKCNVVAAEVWTHNSRMASVVYITDDTTGLPI 180

Query: 181 DDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAE-SG 239
           D+PD LAKIK LLLYVL+GD DK++ANTAVS  STHK+RRLHQ+MYADRDYD+   + S 
Sbjct: 181 DNPDRLAKIKHLLLYVLRGDIDKKNANTAVSFCSTHKDRRLHQLMYADRDYDIYDGDYSC 240

Query: 240 SASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEA 299
           S + R+K  VTV+ C DKGYTVVNLRCPDRPKLLFD VCT+TDMQYVVYH TV AE PEA
Sbjct: 241 STNDRNKLNVTVDDCIDKGYTVVNLRCPDRPKLLFDTVCTITDMQYVVYHGTVNAEGPEA 300

Query: 300 YQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFR 359
           YQEYYIRHVDG PISSEAERQRVI+CLEAA++RRTSEG+ LEL  EDR GLLSDVTRIFR
Sbjct: 301 YQEYYIRHVDGYPISSEAERQRVIHCLEAAVRRRTSEGVKLELSGEDRVGLLSDVTRIFR 360

Query: 360 ENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKDDAYSKSP 419
           ENGLSV RAEVTTRGSQA+NVFYV D SGNPVKSETIE+VRKEIGLTILRVKDD   KSP
Sbjct: 361 ENGLSVCRAEVTTRGSQAMNVFYVTDVSGNPVKSETIEAVRKEIGLTILRVKDDPCLKSP 420

Query: 420 PQESGRFSLGNLFRSRSEKFLYNLGLIKSCS 450
            +ESG+FSL +L RSRSE+FLYNLGL+KS S
Sbjct: 421 TRESGKFSLRDLVRSRSERFLYNLGLMKSSS 451

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.988	0.978	0.576	9.1e-132
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.988	0.975	0.562	1.6e-125
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.948	0.942	0.538	2e-118
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.88	0.914	0.563	6.2e-117
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.948	0.968	0.522	4.3e-109
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.94	0.942	0.480	6e-103
TAIR|locus:2145482	500	AT5G25320 [Arabidopsis thalian	0.508	0.458	0.431	3.2e-100
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.722	0.681	0.418	2.1e-61
TAIR|locus:2039782	411	ACR9 "ACT domain repeats 9" [A	0.722	0.790	0.245	2.3e-10
UNIPROTKB|P27249	890	glnD "[protein-PII] uridylyltr	0.168	0.085	0.358	4e-06

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1292 (459.9 bits), Expect = 9.1e-132, P = 9.1e-132
 Identities = 265/460 (57%), Positives = 341/460 (74%)

Query:     1 MDCWSSSFA--VVDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLN 58
             MD  S SF+  + +E+EKL+ RMNPPRV +DN S +KAT+I+VDSAN+ G LLE+VQ+L 
Sbjct:     1 MDV-SMSFSQDMDNEYEKLIRRMNPPRVVIDNDSCKKATVIRVDSANEYGILLEVVQILT 59

Query:    59 DLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVG 118
             DL+L I +AYISSDG WFMDVF+VTDQ+GNK++++ V + IQ+SLGP A  F +  RSVG
Sbjct:    60 DLNLTITKAYISSDGGWFMDVFNVTDQDGNKVTDEVVLDYIQKSLGPEA-CFSTSMRSVG 118

Query:   119 VQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGL 178
             V  + + T IELTG DRPGLLSE+ AVL+ LKC+V+ AE+WTHN+R A+V+ +T + TG 
Sbjct:   119 VIPSTDSTVIELTGCDRPGLLSELSAVLTHLKCSVLNAEIWTHNTRAAAVMQVTDDLTGC 178

Query:   179 PIDDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAES 238
              I DP+ L++IK LL  VLKG    R A T VS    H +RRLHQMM+ DRDY+    + 
Sbjct:   179 GISDPERLSRIKNLLRNVLKGSNTPREAKTVVSHGEVHTDRRLHQMMFEDRDYEHRLVDD 238

Query:   239 GSA--SGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAES 296
              S+    R +P V V++  DK Y+VV +RC DRPKLLFD VCTLTDMQYVV+H +V  E 
Sbjct:   239 DSSIQDERQRPDVCVDNWLDKDYSVVTVRCKDRPKLLFDTVCTLTDMQYVVFHGSVDTEG 298

Query:   297 PEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTR 356
              EA+QEYY+RH+DG+P+ SEAE+QRVI CLEAAIKRR SEG+ LELC  DR GLLS+VTR
Sbjct:   299 TEAFQEYYVRHIDGSPVKSEAEKQRVIQCLEAAIKRRVSEGLKLELCTTDRVGLLSNVTR 358

Query:   357 IFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKDDAYS 416
             IFREN L+VTRAEV T+G +A+N FYV DASG  + ++TI+S+R+ IG TIL+VK++   
Sbjct:   359 IFRENSLTVTRAEVKTKGGKALNTFYVSDASGYSIDAKTIDSIRQTIGQTILKVKNNPQE 418

Query:   417 -----KSPPQESG-RFSLGNLFRSRSEKFLYNLGLIKSCS 450
                  KSP  ES  RF  G LF+S+S  F+ N GL++S S
Sbjct:   419 QQQRQKSPSHESPTRFLFGGLFKSKS--FV-NFGLVRSYS 455

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
 Identities = 258/459 (56%), Positives = 336/459 (73%)

Query:     1 MD-CWSSSFAVVDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLND 59
             MD C S S+ + DE  K + R+NPPRV +DN   +  T+IKVDSANK G LLE+VQVL +
Sbjct:     1 MDVCLSYSYNMDDEIAKFIRRVNPPRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTE 60

Query:    60 LDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARS-FR-SLRRSV 117
             L+L I++AYISSDG WFMDVF+VTDQ+GNK++++ V E I++SLGP   S F  S+R ++
Sbjct:    61 LNLTIKKAYISSDGGWFMDVFNVTDQDGNKVTDEIVLEYIRKSLGPDESSCFSPSMRSTI 120

Query:   118 GVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATG 177
             GV+ ++++T +ELTG DRPGLLSE+ AVL DL+CNV+ AE+WTH ++ A+V+ +T E T 
Sbjct:   121 GVKQSVDYTVVELTGTDRPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVTDEETC 180

Query:   178 LPIDDPDTLAKIKRLLLYVLKGD---RDKRSANTAVS--VDSTHKERRLHQMMYADRDYD 232
               I DP+ L+KI++LL YVL G    R  R   T VS  ++ TH +R+LHQ+M+ADRDYD
Sbjct:   181 SAITDPERLSKIRKLLGYVLTGGSSGRRFREPKTTVSSALNETHTDRKLHQLMFADRDYD 240

Query:   233 M--NYAESGSASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHA 290
                N  +     GR  P V V +  D  Y++V ++C DRPKLLFD V TLTDM YVV HA
Sbjct:   241 EWENNVDDEDKCGRVIPDVDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTLTDMNYVVSHA 300

Query:   291 TVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGL 350
             ++ AE P+AYQEYYIRH DG+P+ SEAERQRVI CL+AAI+RR SEG+ LELC  DR GL
Sbjct:   301 SIDAEGPQAYQEYYIRHTDGSPVKSEAERQRVIKCLKAAIQRRVSEGLKLELCTSDRVGL 360

Query:   351 LSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRV 410
             LSDVTRIFREN L+VTRAEV T+G +A+N FYV DASG  V ++TIES+R+ IG TIL+V
Sbjct:   361 LSDVTRIFRENSLTVTRAEVKTKGDKALNTFYVRDASGYQVDTKTIESIRQVIGQTILQV 420

Query:   411 KD-DAYSKSPPQESGRFSLGNLFRSRSEKFLYNLGLIKS 448
             K  +  +K  PQ+S    L  +F+SRS  F+ N GLI+S
Sbjct:   421 KGGNTDAKPSPQDSPTGFLFGVFKSRS--FV-NFGLIRS 456

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
 Identities = 237/440 (53%), Positives = 314/440 (71%)

Query:    13 EFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSD 72
             E+E L  R+NPP V++DNTS ++ TL+KVDS NK G LLE+VQVL DLDL I +AYISSD
Sbjct:    12 EYENLSSRINPPSVSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTDLDLTITKAYISSD 71

Query:    73 GEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLR----RSVGVQAALEHTTI 128
             G WFMDVFHVTDQ GNK+++    + I++ LGP+  +  S      + VGV +  +HT+I
Sbjct:    72 GGWFMDVFHVTDQQGNKVTDSKTIDYIEKVLGPKGHASASQNTWPGKRVGVHSLGDHTSI 131

Query:   129 ELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAK 188
             E+  RDRPGLLSEV AVL+DL  NV+ AE WTHN R+A V+Y+   AT   +DDP+ L+ 
Sbjct:   132 EIIARDRPGLLSEVSAVLADLNINVVAAEAWTHNRRIACVLYVNDNATSRAVDDPERLSS 191

Query:   189 IKRLLLYVLKG--DRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSK 246
             ++  L  VL+G  ++D++ A T++S+ STH +RRLHQM +ADRDY+       SAS   +
Sbjct:   192 MEEQLNNVLRGCEEQDEKFARTSLSIGSTHVDRRLHQMFFADRDYEAVTKLDDSASCGFE 251

Query:   247 PLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIR 306
             P +TVE C +KGY+V+N+ C DRPKL+FD VCTLTDMQY+V+HAT+ +    A QEY+IR
Sbjct:   252 PKITVEHCEEKGYSVINVSCEDRPKLMFDIVCTLTDMQYIVFHATISSSGSHASQEYFIR 311

Query:   307 HVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRENGLSVT 366
             H DG  + +E E++RV+ CLEAAI RR SEG SLELC +DR GLLS+VTRI RE+GLSV+
Sbjct:   312 HKDGCTLDTEGEKERVVKCLEAAIHRRVSEGWSLELCAKDRVGLLSEVTRILREHGLSVS 371

Query:   367 RAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKDDAYSKSPPQ---ES 423
             RA VTT G QAVNVFYV DASGNPV  +TIE++R EIG +++    D  +K P +   E 
Sbjct:   372 RAGVTTVGEQAVNVFYVKDASGNPVDVKTIEALRGEIGHSMMI---DFKNKVPSRKWKEE 428

Query:   424 GRFSLGNLFRSRSEKFLYNL 443
             G+   G  + +++  F  NL
Sbjct:   429 GQAGTGGGW-AKTSFFFGNL 447

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1152 (410.6 bits), Expect = 6.2e-117, P = 6.2e-117
 Identities = 226/401 (56%), Positives = 298/401 (74%)

Query:    12 DEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS 71
             DE+ KL+ RMNPPRV +DN ++  AT+I+VDS NK G+LLE+VQVL D++L+I++AYISS
Sbjct:     4 DEYAKLIRRMNPPRVVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYISS 63

Query:    72 DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSF-RSLRRSVGVQAALEHTTIEL 130
             DG WFMDVF V DQ+GNK+ +  V + IQ+ +   A  F   LR SVGV    E+T+IEL
Sbjct:    64 DGGWFMDVFKVIDQDGNKIRDTQVLDYIQKRIESNAGWFIPPLRSSVGVMPTDEYTSIEL 123

Query:   131 TGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIK 190
              G DRPGLLSEV AVL+DL CNV+ AE+WTHN+R A+V+++T  +T   I DP  L+ IK
Sbjct:   124 AGTDRPGLLSEVSAVLTDLHCNVVNAEIWTHNTRAAAVIHVTDNSTHSAITDPIRLSTIK 183

Query:   191 RLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVT 250
              LL  V++ +   R+A T  S   TH+ERRLHQ+M+ DRDY+       + +  S+P VT
Sbjct:   184 ELLCNVVRTNSGSRAAKTVFSCSDTHRERRLHQIMFDDRDYE---GVKRARTSASRPSVT 240

Query:   251 VESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDG 310
             + +  +K YTVV +R  DRPKL+FD VCTLTDMQYVV+H  V  E  EAYQE+YIRHVDG
Sbjct:   241 LMNI-EKDYTVVTMRSKDRPKLVFDVVCTLTDMQYVVFHGMVSTEPVEAYQEFYIRHVDG 299

Query:   311 NPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEV 370
              PI+SEAE++RVI CLEAAI+RR SEG+ LEL  EDR GLLSD+TR FREN L++ RAE+
Sbjct:   300 LPINSEAEQERVIQCLEAAIERRASEGLELELSAEDRVGLLSDITRTFRENSLTIVRAEI 359

Query:   371 TTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVK 411
             +TR  +A + FYV D +GNPV+S+ +ES+R++IG++ L+VK
Sbjct:   360 STREGKAKDTFYVTDVTGNPVESKIVESIRQQIGVSKLKVK 400

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
 Identities = 234/448 (52%), Positives = 302/448 (67%)

Query:    11 VDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYIS 70
             +DE+EKLV+RMN PRV +DN     AT++KVDS+ + G LLE VQ+L DL+L I++AYIS
Sbjct:     7 LDEYEKLVIRMNTPRVVIDNGVCSSATIVKVDSSRRNGILLEAVQILTDLNLSIKKAYIS 66

Query:    71 SDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQAALEHTTIEL 130
             SDG W MDVFHVTD NGNKL++  V   I+QS+            ++ V      T +EL
Sbjct:    67 SDGTWNMDVFHVTDLNGNKLNDQSVLRYIEQSIETVYYG-----ENIEVNGL---TALEL 118

Query:   131 TGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIK 190
             TG DR GLLSE+FAVLSDL C+V+ A++WTHN R+ASV+Y+    +G PI D   ++KI+
Sbjct:   119 TGTDRIGLLSEMFAVLSDLNCDVVDAKLWTHNGRVASVIYLKDCISGAPILDSHRISKIE 178

Query:   191 RLLLYVLKGDRDKRSA-NTAVSVDST-HKERRLHQMMYADRDYDMNYAESGSASGRSKPL 248
               L  VL GD D  SA  T V+VDS  H ERRLHQ+M+ DRDY     E  S      P+
Sbjct:   179 GRLKNVLNGDNDVNSAAKTCVTVDSMMHIERRLHQLMFEDRDY-----ERRSKKHERSPM 233

Query:   249 V--TVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIR 306
             V  TV++  ++GY+VVN+ C DR KLLFD VCTLTDM+Y V+HAT+     +A+ E+YIR
Sbjct:   234 VVVTVQNWAERGYSVVNVHCRDRTKLLFDVVCTLTDMEYAVFHATINTAEDQAHLEFYIR 293

Query:   307 HVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRENGLSVT 366
             H DG+PISSEAERQRVI CLEAA++RR  EG+ LEL   D+ GLL++VTR FRENGL+VT
Sbjct:   294 HKDGSPISSEAERQRVIQCLEAAVERRALEGVRLELRHPDKQGLLAEVTRTFRENGLNVT 353

Query:   367 RAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKD--DAYSKSPPQESG 424
             R E++T    A N+FYV DA+G+    + IESVR++IGL  LRVK+    Y K    E  
Sbjct:   354 RTEISTSSDMATNIFYVTDANGDEPDFKLIESVREKIGLECLRVKEMPTMYHKKGDGEEQ 413

Query:   425 RFSLGNLFRSRSEKF--LYNLGLIKSCS 450
             + +   L    S  +  L+N GLIKSCS
Sbjct:   414 QQTKAVLVSLGSLVWRNLFNFGLIKSCS 441

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
 Identities = 218/454 (48%), Positives = 306/454 (67%)

Query:    12 DEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS 71
             +E+EKLV+RMN PRV +DN     +T++K+DSA   G LLE VQ+L D++L I++AYISS
Sbjct:     8 NEYEKLVVRMNMPRVVIDNGVCPNSTVVKIDSARSPGILLESVQLLTDMNLWIKKAYISS 67

Query:    72 DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQAALEHTTIELT 131
             DG+W MDVFHV+D NG+KL+++++   I++S+      +       G+      T +ELT
Sbjct:    68 DGKWNMDVFHVSDLNGDKLTDENLIRYIEKSI--ETSHYCKTEGYTGL------TALELT 119

Query:   132 GRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPID-DPDTLAKIK 190
             G DR GLLSEVFAVL+DL+C+V+ A+ WTHN R+AS++Y+    +G PID D D + +++
Sbjct:   120 GTDRVGLLSEVFAVLADLECDVVEAKAWTHNGRIASMIYVKDGNSGTPIDGDSDRVQRVE 179

Query:   191 RLLLYVLKGDRD-KRSANTAVSVD-STHKERRLHQMMYADRDYDMNYAESGSASGRSKPL 248
               L  +LK D   +    T VS   +TH ERRLHQ M+ DRDY+  +    S      P+
Sbjct:   180 GQLRNLLKADDGYQNDTRTCVSYGGNTHMERRLHQRMFMDRDYEKKFDIEKS------PI 233

Query:   249 VTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHV 308
             V+V++   +GY+VVNL+C DR KLLFD VCTLTDM Y+V+HA +      A+ E+Y+RH 
Sbjct:   234 VSVQNLPKRGYSVVNLQCKDRMKLLFDVVCTLTDMAYIVFHAAIRTVGETAFLEFYVRHS 293

Query:   309 DGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRA 368
             DG+P+SSE ERQR+I CL+AAI+RRT +G+ LELC  DR GLL++VTRI RENGL++ RA
Sbjct:   294 DGHPVSSEPERQRLIQCLQAAIERRTVKGVRLELCTADRPGLLAEVTRILRENGLNIARA 353

Query:   369 EVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRVKD-------DAYSKSP-- 419
             E++T+ S A NVFYV DA+GN +  E I+S+R++IG+  L VK+       +A  K    
Sbjct:   354 EISTKDSIARNVFYVTDANGNLIDPEIIKSIREKIGIDDLSVKEPFPISCREAVEKEQHI 413

Query:   420 -PQE-SGRFSLGNLFRSRSE---KFLYNLGLIKS 448
              PQ+  GR+  G +  S      + LY+LGLIKS
Sbjct:   414 EPQDHQGRYGGGTVLVSLGSLVMRNLYHLGLIKS 447

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2145482 AT5G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
 Identities = 111/257 (43%), Positives = 169/257 (65%)

Query:   214 STHKERRLHQMMYADRDYDMNYAESGSAS------------GRSKPLVTVESCTDKGYTV 261
             +++ ERRLHQ+M + RD+D  + E  S S             R   +V++ +C ++GY++
Sbjct:   239 NSNMERRLHQLMLSVRDFDEPFCEPSSLSLLSSKLEYCDHKERKTTIVSIGNCEERGYSI 298

Query:   262 VNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQR 321
             V ++  DR +L+FD +CTL DMQYV++HA + ++  +A+QEY+IRH+DG  +++E E++R
Sbjct:   299 VTVKSKDRRRLMFDTICTLVDMQYVIFHAALRSDGADAFQEYFIRHIDGRALNTEGEKER 358

Query:   322 VINCLEAAIKRRTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVF 381
             VI CLEAAI+RR  EG+ LELC E+R GLLSD+TR+ RENGL+V RA+V T+G +++N F
Sbjct:   359 VIKCLEAAIERRVCEGVKLELCAENRVGLLSDITRVLRENGLTVVRADVETQGQKSLNAF 418

Query:   382 YVVDASGNPVKSETIESVRKEIGLTILRVKDD-------------AYSKSPPQ---ESGR 425
             YV D SGN +  E +ESV+KE+    L VK++             A + + PQ   +  R
Sbjct:   419 YVRDISGNKIDMEFVESVKKEMRPIHLEVKNEDTKIDTVGSDEPTASASATPQRQPQPHR 478

Query:   426 FSLGNLFRSRSEKFLYN 442
             FSLG++ RS+ E+   N
Sbjct:   479 FSLGDILRSQMERLSLN 495

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 148/354 (41%), Positives = 214/354 (60%)

Query:   112 SLRRSVGVQ-AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVY 170
             +L+R V  +  + EHT  E+TG +RPGLLSE+ AVLSD+ C+V  A  WTH+ R A V+Y
Sbjct:   118 NLKREVQQRHVSTEHTAFEITGINRPGLLSEISAVLSDIGCHVTAAVAWTHHERAAMVIY 177

Query:   171 ITSEATGLPIDDPDTLAKIKRLLLYVLK-----GDRDK---RSANT-AVSVDSTHKERRL 221
             +     G PI DP   A++K  L  V++     GD      R      V V   H ERRL
Sbjct:   178 LEDGFNGGPIIDPIRKAQVKDHLDTVMEAHHIVGDVSHVVVRVVEAKGVPVGWAHTERRL 237

Query:   222 HQMMYADRDY----DMN-YAESGSA--SGRSKPL-VTVESCTDKGYTVVNLRCPDRPKLL 273
             H++MY + DY    D + + +   A   GR + + VT+E+C   GY++VN++C DRPKLL
Sbjct:   238 HELMYGEGDYENCFDCDCFGDRCDALWRGRCERIHVTIEACN--GYSMVNVKCRDRPKLL 295

Query:   274 FDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR 333
             FD VC L ++Q+VV+HA   A+   A QEY+IR  +G  + +E +R+R+ +CL AAI RR
Sbjct:   296 FDTVCALKELQFVVFHAVAGAKGSTAEQEYFIRKKNGGTLETEGQRERLRHCLVAAISRR 355

Query:   334 TSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKS 393
              S+G+ LE+  E++ GLLSDVTR+ RENGLS+TRAE+ T+G  AV  FYV D +G     
Sbjct:   356 ASQGLKLEIRTENKMGLLSDVTRVVRENGLSITRAEMCTQGEIAVGSFYVTDVNGGETGP 415

Query:   394 ETIESVRKEIGLTILR-VKD--------DAYSKSPPQESGRFSLGNLFRSRSEK 438
               +E+V +E+G  ++  VK          + S S  Q+  + S+G +F S+ E+
Sbjct:   416 SEVEAVVRELGGAVVSAVKGVGMMPRRIGSTSDSVEQDKAKSSIGRMFWSKLER 469

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2039782 ACR9 "ACT domain repeats 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 87/355 (24%), Positives = 160/355 (45%)

Query:    37 TLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVT-DQNGNKLSEDDV 95
             T++ V+  ++ G    L +++ +  L I RA  S+DG W   VF VT D +  K+  D +
Sbjct:    21 TVVTVNCPDESGLGSTLCRIILEFGLSITRADFSTDGRWCYIVFWVTPDISSPKIDWDSL 80

Query:    96 SERIQQSLGPRARSFR-SLRRSVGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVM 154
               R+  +      SF   L+ +V    +L    ++   RDR GLL +V  VL++L+  + 
Sbjct:    81 KNRLLSACPSCLGSFYFCLQSNVSKPPSLY--LLKFFCRDRKGLLHDVTKVLTELEFTIQ 138

Query:   155 GAEVWTH-NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVD 213
               +V T  + R+  + +IT +A  L +       K    L  VL G+    S    ++  
Sbjct:   139 RVKVMTTPDGRVLDMFFIT-DAMDL-LHTKQRQTKTCDHLTAVL-GEHGV-SCELELAGP 194

Query:   214 STHKERRLHQM--MYADRDYDMN-YAESGSASGRSKPLVTVESCTDKGYTVVNLRCPDRP 270
                  +R   +  + AD  +  + +  SGS+S  +K ++TV++     +T++ +RC D+ 
Sbjct:   195 ELESVQRFSSLPPLAADELFGPDGFDISGSSS--NKAVLTVDNQLSPAHTLLQIRCVDQK 252

Query:   271 KLLFDAVCTLTDMQYVVYHATVIAESPEAYQ--EYYIRHVDGNPISS---EAE-----RQ 320
              L +D + T  D    + +    +   + Y+  E ++R  DGN I     +A      ++
Sbjct:   253 GLFYDILRTSKDCDVHIAYGR-FSSKVKGYRNLELFVRGTDGNKIMDPKHQANFCARLKE 311

Query:   321 RVINCLEAAIKRRTSEGISL-----ELCCEDRAGLLSDVTRIFRENGLSVTRAEV 370
              ++  L   I  R  +   L     EL  + R  +  DVT   +  G+ +  AE+
Sbjct:   312 EMVCPLRVIIVNRGPDTELLVANPVELSGKGRPRVFYDVTLALKSLGICIFSAEI 366

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

UNIPROTKB|P27249 glnD "[protein-PII] uridylyltransferase" [Escherichia coli K-12 (taxid:83333)]

 Score = 100 (40.3 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
 Identities = 29/81 (35%), Positives = 41/81 (50%)

Query:   245 SKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPE--AYQE 302
             SKPLV +     +G T + +  PDRP  LF AVC   D + +  H   I  + +  A   
Sbjct:   693 SKPLVLLSPQATRGGTEIFIWSPDRP-YLFAAVCAELDRRNLSVHDAQIFTTRDGMAMDT 751

Query:   303 YYIRHVDGNPISSEAERQRVI 323
             + +   DGNP+S  A+R  VI
Sbjct:   752 FIVLEPDGNPLS--ADRHEVI 770

GO:0046872 "metal ion binding" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0006464 "cellular protein modification process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006985001 SubName- Full=Chromosome chr1 scaffold_180, whole genome shotgun sequence; (447 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	450
cd04897	75	cd04897, ACT_ACR_3, ACT domain-containing protein	9e-37
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	4e-34
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	4e-33
cd04925	74	cd04925, ACT_ACR_2, ACT domain-containing protein	3e-30
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	1e-22
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	9e-18
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	2e-16
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	3e-14
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	5e-14
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	3e-13
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-12
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	1e-12
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	5e-12
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	2e-11
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	2e-10
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	1e-09
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	3e-09
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	3e-09
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	4e-09
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	4e-09
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	7e-09
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	1e-08
PRK05007	884	PRK05007, PRK05007, PII uridylyl-transferase; Prov	1e-07
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	2e-07
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	2e-07
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	3e-07
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	4e-07
pfam01842	66	pfam01842, ACT, ACT domain	4e-07
pfam01842	66	pfam01842, ACT, ACT domain	6e-07
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	9e-07
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	2e-06
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	4e-06
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	4e-06
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	1e-05
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	2e-05
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	2e-05
cd04876	71	cd04876, ACT_RelA-SpoT, ACT domain found C-termina	3e-05
cd04894	69	cd04894, ACT_ACR-like_1, ACT domain-containing pro	7e-05
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	2e-04
cd04927	76	cd04927, ACT_ACR-like_2, Second ACT domain, of a n	2e-04
PRK05007	884	PRK05007, PRK05007, PII uridylyl-transferase; Prov	7e-04
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	8e-04
pfam13740	76	pfam13740, ACT_6, ACT domain	8e-04
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	0.001
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	0.001
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	0.001
cd04927	76	cd04927, ACT_ACR-like_2, Second ACT domain, of a n	0.001
pfam13291	77	pfam13291, ACT_4, ACT domain	0.002
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	0.004

>gnl|CDD|153169 cd04897, ACT_ACR_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  129 bits (325), Expect = 9e-37
 Identities = 51/75 (68%), Positives = 62/75 (82%)

Query: 259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAE 318
           Y+VV ++C DRPKLLFD VCTLTDM YVV+HAT+  +  +A+QEYYIRH DG  +S+E E
Sbjct: 1   YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGE 60

Query: 319 RQRVINCLEAAIKRR 333
           RQRVI CLEAAI+RR
Sbjct: 61  RQRVIKCLEAAIERR 75

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  121 bits (306), Expect = 4e-34
 Identities = 50/72 (69%), Positives = 60/72 (83%)

Query: 337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETI 396
           G+ LEL  EDR GLLSDVTR+FRENGL+VTRAE++T+G  AVNVFYV DA+GNPV  +TI
Sbjct: 1   GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTI 60

Query: 397 ESVRKEIGLTIL 408
           E+VR+EIG   L
Sbjct: 61  EAVRQEIGPACL 72

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  119 bits (299), Expect = 4e-33
 Identities = 48/72 (66%), Positives = 55/72 (76%)

Query: 36  ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDV 95
            TL+KVDSA K G LLE VQVL DLDL I +AYISSDG WFMDVFHVTDQ GNKL++D +
Sbjct: 1   CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSL 60

Query: 96  SERIQQSLGPRA 107
              I++SLG   
Sbjct: 61  IAYIEKSLGTSR 72

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153197 cd04925, ACT_ACR_2, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  111 bits (280), Expect = 3e-30
 Identities = 48/74 (64%), Positives = 55/74 (74%)

Query: 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDT 185
           T IELTG DRPGLLSEVFAVL+DL CNV+ A  WTHN R+A V+Y+  E TG PIDDP  
Sbjct: 1   TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIR 60

Query: 186 LAKIKRLLLYVLKG 199
           LA I+  L  VL+G
Sbjct: 61  LASIEDRLDNVLRG 74

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 90.6 bits (226), Expect = 1e-22
 Identities = 31/68 (45%), Positives = 44/68 (64%)

Query: 340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESV 399
           LEL   DR GLL+DVTR+  E GL++  A++ T G +A +VFYV DA G P+  E  E++
Sbjct: 3   LELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEAL 62

Query: 400 RKEIGLTI 407
           R  +G  +
Sbjct: 63  RAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 77.2 bits (191), Expect = 9e-18
 Identities = 24/68 (35%), Positives = 43/68 (63%)

Query: 340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESV 399
           +E+   DR GLL+D+TR+  + GL++  A ++T G +A++VFYV D+ G P+  E I  +
Sbjct: 3   VEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARL 62

Query: 400 RKEIGLTI 407
            + +   +
Sbjct: 63  EEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 73.3 bits (181), Expect = 2e-16
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDT 185
           T +ELT  DRPGLL++V  VL++L  N+  A++ T   R   V Y+T +A G P  DP+ 
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVT-DADGQP-LDPER 58

Query: 186 LAKIKRLLLYVL 197
              ++  L   L
Sbjct: 59  QEALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 67.2 bits (165), Expect = 3e-14
 Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 37  TLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVS 96
           T+++V + ++ G L ++ +VL DL L I  A IS+ GE  +DVF+VTD +G  L  + + 
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERI- 59

Query: 97  ERIQQSL 103
            R++++L
Sbjct: 60  ARLEEAL 66

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 74.1 bits (183), Expect = 5e-14
 Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 23/162 (14%)

Query: 66  RAYISSDGEWFMDVFHVTDQNGNKLSEDDVSER----IQQSLG-------PRARSFRSLR 114
           R + ++DG   +D F + D  G    E     R    I+ +L          A+  +  +
Sbjct: 764 RIFTTTDG-RALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKK 822

Query: 115 R--------SVGV--QAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSR 164
           R         V +  +A+   T IE+ GRDRPGLL ++   LSDL  N+  A + T+  R
Sbjct: 823 RARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGER 882

Query: 165 MASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKGDRDKRSA 206
              V Y+T +  GL I +    A I+R LL  L     +  A
Sbjct: 883 AVDVFYVT-DLFGLKITNEARQAAIRRALLAALAEGEAEARA 923

Length = 931

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 64.1 bits (157), Expect = 3e-13
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDT 185
           T +E+   DRPGLL+++  VL+DL  N+  A + T   R A  V+  +++ G P  DP+ 
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGER-ALDVFYVTDSDGRP-LDPER 58

Query: 186 LAKIKRLLLYVL 197
           +A+++  L   L
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 62.6 bits (153), Expect = 1e-12
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAER 319
           TVV +  PDRP LL D    L D+   ++ A +      A   +Y+   DG P+  E   
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPE-RI 59

Query: 320 QRVINCLEAAI 330
            R+   LE A+
Sbjct: 60  ARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 33/183 (18%)

Query: 245 SKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIA-ESPEAYQEY 303
             PL  ++     G T V +  PD+P L       L  +   V+ A V   +   A   +
Sbjct: 654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTF 713

Query: 304 YIRHVDGNPISSEAERQRVINCLE----------AAIKRRTS------------------ 335
            ++ + G+P ++E   Q ++  L             I  R +                  
Sbjct: 714 VVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILN 773

Query: 336 ----EGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPV 391
               +   +E+   DR GLL+ V R   E GLS+  A++TT G +A +VFYV D  G  +
Sbjct: 774 TASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKL 833

Query: 392 KSE 394
             E
Sbjct: 834 TDE 836

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 67.8 bits (166), Expect = 5e-12
 Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 21/198 (10%)

Query: 24  PRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYI--SSDGEWFMDVFH 81
           P V +    +   T + V + ++      +   L+   L I  A I  + DG + +D F 
Sbjct: 672 PLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDG-YALDTFI 730

Query: 82  VTDQNGNKLSEDDVSERIQ---QSLG-------PRARSFRSLRR-----SVGVQAAL--E 124
           V + +G  + ED  +       ++L         R R  R LR       V +      +
Sbjct: 731 VLEPDGFPVEEDRRAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASND 790

Query: 125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPD 184
            T +E+   DRPGLL+ +  V +DL  ++  A++ T   R+  V  +T  A G  ++   
Sbjct: 791 KTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTD-ADGQALNAEL 849

Query: 185 TLAKIKRLLLYVLKGDRD 202
             + ++RLL  +L  D  
Sbjct: 850 RQSLLQRLLEALLPNDEG 867

Length = 867

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 29/198 (14%)

Query: 245 SKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVI-AESPEAYQEY 303
            KPLV +      G T V +  PDRP+L       L+     +  A +       A   +
Sbjct: 670 GKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTF 729

Query: 304 YIRHVDGNPISSEAERQRVINCLEAA------------IKRR-------TSEGIS----- 339
            +   DG P+  +         +EA             I R+           I      
Sbjct: 730 IVLEPDGFPVEEDRRAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASN 789

Query: 340 ----LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSET 395
               LE+   DR GLL+ +  +F + GLS+  A++TT G +  +VF V DA G  + +E 
Sbjct: 790 DKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNAEL 849

Query: 396 IESVRKEIGLTILRVKDD 413
            +S+ + +   +L   + 
Sbjct: 850 RQSLLQRLLEALLPNDEG 867

Length = 867

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 34/82 (41%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 23  PPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHV 82
           PPRVT+ NT++RKAT+++V + ++ G L  + + L +L L I+ A I++ GE   DVF+V
Sbjct: 766 PPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYV 825

Query: 83  TDQNGNKLSEDDVSERIQQSLG 104
           TD  G KL+ D+  +R+ + L 
Sbjct: 826 TDLFGLKLT-DEEEQRLLEVLA 846

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 43/167 (25%), Positives = 64/167 (38%), Gaps = 30/167 (17%)

Query: 255 TDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPIS 314
            D     V +  PDR  LL  A   L   +  V  A+V +    A  E+ +    G+P  
Sbjct: 595 ADPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPD 654

Query: 315 SEAERQRVINCLE------AAIKRRTSEGIS------------------------LELCC 344
           +   RQ +   L+      A +  R +   +                        LE+  
Sbjct: 655 AALLRQDLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRA 714

Query: 345 EDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPV 391
            DR GLL+ + R     G+ V  A V T G+  V+VFYV  A+G P+
Sbjct: 715 ADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPL 761

Length = 774

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 59.1 bits (144), Expect = 3e-09
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASG----NPVKSET 395
           +E+   DR GLL D+TR   +  L++  A + T G +AV+VFYV D  G    N  +   
Sbjct: 846 IEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAA 905

Query: 396 IES 398
           I  
Sbjct: 906 IRR 908

Length = 931

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 59.3 bits (144), Expect = 3e-09
 Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 25/182 (13%)

Query: 24  PRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYI--SSDGEWFMDVFH 81
           P   +D T     T + + + ++ G   ++   L  L L +  A +  + DG    D F 
Sbjct: 656 PLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVAL-DTFV 714

Query: 82  VTDQNGNKLSEDDVSERIQQSL---------GPRARSFRSLRR----------SVGVQ-- 120
           V D  G+  + + V + + Q L          P   S R  RR           V +   
Sbjct: 715 VQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNT 774

Query: 121 AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPI 180
           A+ + T +E+   DRPGLL+ V   L +L  ++  A++ T   +   V Y+T +  GL +
Sbjct: 775 ASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVT-DLFGLKL 833

Query: 181 DD 182
            D
Sbjct: 834 TD 835

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 52.5 bits (127), Expect = 4e-09
 Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 37  TLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVS 96
           T++++ + ++ G L ++ +VL +L L I  A I++ GE   DVF+VTD +G  L  +   
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQ- 59

Query: 97  ERIQQSLG 104
           E ++ +LG
Sbjct: 60  EALRAALG 67

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 58.6 bits (142), Expect = 4e-09
 Identities = 50/232 (21%), Positives = 87/232 (37%), Gaps = 30/232 (12%)

Query: 105 PRARSFRSLRRSVGVQAALEHTTIELT------GRDRPGLLSEVFAVLSDLKCNVMGAEV 158
             A S R    S G  A ++ T             D+PGL ++V   L+ L  +V  A+V
Sbjct: 642 WHAESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQV 701

Query: 159 WTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKE 218
            T    +A   ++  +  G P        ++ + L+ VL     K           T   
Sbjct: 702 NTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVL-AGLAKDPD--------TISA 752

Query: 219 RRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVC 278
           RR  +                       P VT+ +   +  T++ +R  DRP LL     
Sbjct: 753 RRARR--------------RRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGR 798

Query: 279 TLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAI 330
           TL ++   +  A +     +A   +Y+  + G  ++ E E QR++  L A++
Sbjct: 799 TLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDE-EEQRLLEVLAASV 849

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 58.0 bits (141), Expect = 7e-09
 Identities = 32/81 (39%), Positives = 56/81 (69%)

Query: 23  PPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHV 82
           PPRVT+DN ++ + T+I+V+  ++ G L +L + L+DL+L I  A+I++ GE  +DVF+V
Sbjct: 830 PPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYV 889

Query: 83  TDQNGNKLSEDDVSERIQQSL 103
           TD  G K++ +     I+++L
Sbjct: 890 TDLFGLKITNEARQAAIRRAL 910

Length = 931

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 35/182 (19%)

Query: 245 SKPLVTVESCTDK---GYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVI-AESPEAY 300
             PLV ++  T +   G T + +  PD+       V  +  +   ++ A +I + S    
Sbjct: 687 GGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTL 746

Query: 301 QEYYIRHVDGNPISSEAER-----QRVINCLE------AAIKRRTSE-----------GI 338
             Y +   DG PI     R     + +   L         I+RR               I
Sbjct: 747 DTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTI 806

Query: 339 S---------LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGN 389
           S         LE+   DR GLL+ + RIF E  LS+  A++ T G +  +VF++ DA   
Sbjct: 807 SNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQ 866

Query: 390 PV 391
           P+
Sbjct: 867 PL 868

Length = 895

>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 33/187 (17%)

Query: 245 SKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAY--QE 302
            KPLV +     +G T + +  PDRP  LF AVC   D + +  H   I  S +      
Sbjct: 687 DKPLVLLSKQATRGGTEIFIWSPDRPY-LFAAVCAELDRRNLSVHDAQIFTSRDGMAMDT 745

Query: 303 YYIRHVDGNPISSEAERQRVINCLEAAIK---------RRTS------------------ 335
           + +   DG+P+ S+   Q +   LE A+          RR                    
Sbjct: 746 FIVLEPDGSPL-SQDRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTH 804

Query: 336 -EGIS-LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKS 393
            +  S +EL   D+ GLL+ V +IF + G+S+  A +TT G +  ++F +  A    +  
Sbjct: 805 TDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNE 864

Query: 394 ETIESVR 400
           E  + +R
Sbjct: 865 ELQQELR 871

Length = 884

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 23  PPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHV 82
           PPRVT+  T++   T+++V + ++ G L  L  V  DL L +  A I++ GE   DVF V
Sbjct: 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIV 837

Query: 83  TDQNGNKLSEDDVSERIQQSLG 104
           TD +G  L+  ++ + + Q L 
Sbjct: 838 TDADGQALN-AELRQSLLQRLL 858

Length = 867

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLA 187
           + ++G DRPGLL++V +VL++   N+   E  T      + ++I        +D    L 
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIV-------VDGDGDLE 53

Query: 188 KIKRLLL 194
           K+   L 
Sbjct: 54  KLLEALE 60

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 51/210 (24%)

Query: 134 DRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLL 193
           D PGL S +    +    N++ A ++T     A   +   +A G   D+P  LA++ + +
Sbjct: 741 DHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAI 800

Query: 194 LYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSK-----PL 248
              L G                  E RL + + A R              R++     P 
Sbjct: 801 EDALSG------------------EVRLPEAL-AKRT---------KPKKRARAFHVPPR 832

Query: 249 VTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQE-----Y 303
           VT+++     +TV+ +   DRP LL+D    L+D+  +   +  IA     Y E     +
Sbjct: 833 VTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLN-LNIASAHIA----TYGERAVDVF 887

Query: 304 YIRHVDGNPISSEAERQRVINCLEAAIKRR 333
           Y+  + G  I++EA RQ       AAI+R 
Sbjct: 888 YVTDLFGLKITNEA-RQ-------AAIRRA 909

Length = 931

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 23/81 (28%), Positives = 48/81 (59%)

Query: 23  PPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHV 82
           P +VT+ N + R  T++++ + ++ G L  + ++  + DL ++ A I++ GE   DVF +
Sbjct: 801 PTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFI 860

Query: 83  TDQNGNKLSEDDVSERIQQSL 103
           TD +   LS+  +  R+Q ++
Sbjct: 861 TDADNQPLSDPQLCSRLQDAI 881

Length = 895

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIE 397
             LE+   DR GLL++V     + G+++     +T G +A  VF VV      ++   +E
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLE-AALE 59

Query: 398 SVRKEIG 404
           +++K +G
Sbjct: 60  ALKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITSEATGLPIDDP 183
           T +E+   DRPGLL+EVF  L+D   N+      T    + +  +V +  E      D  
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDE-----EDLE 55

Query: 184 DTLAKIKRLL 193
             L  +K+LL
Sbjct: 56  AALEALKKLL 65

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 45.4 bits (108), Expect = 9e-07
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEV-TTRGSQAVNVFYVVDASGNP 390
           L +   DR GLL+ V  +  E G+++T  E  T+      ++F VVD  G+ 
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDL 52

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 19/65 (29%), Positives = 32/65 (49%)

Query: 133 RDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRL 192
            DRPGL + +   L  L  N++ A ++T     A   ++  +  G PI + + LA+I+  
Sbjct: 9   PDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREA 68

Query: 193 LLYVL 197
           L   L
Sbjct: 69  LEDAL 73

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 25/185 (13%)

Query: 24  PRVTVDNTSNRK---ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYI-SSDGEWFMDV 79
           P V +  T+ R+    T I + + ++       V  ++ L+L I  A I +S  ++ +D 
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDT 748

Query: 80  FHVTDQNGNKLSEDDV-SERIQQSLG---------PRARSFRSLRR----------SVGV 119
           + V D +G  + ++    E+I++ L          P     R  R+          ++  
Sbjct: 749 YIVLDDDGEPIGDNPARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISN 808

Query: 120 QAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLP 179
            A    T +E+   DRPGLL+ +  +  +   ++  A++ T   R+  V +IT +A   P
Sbjct: 809 DAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFIT-DADNQP 867

Query: 180 IDDPD 184
           + DP 
Sbjct: 868 LSDPQ 872

Length = 895

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 38/175 (21%)

Query: 247 PLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVI-AESPEAYQEYYI 305
            LV + +   +G T + + C D+  L    V T+   +  ++ A +I ++       + +
Sbjct: 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIV 724

Query: 306 RHVDGNPISSEAERQRVINCLEAAI----------KRRTSEGISL--------------- 340
             ++G  +  +  RQ     LE A+          K    E   L               
Sbjct: 725 TELNGKLLEFDRRRQ-----LEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEE 779

Query: 341 -------ELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASG 388
                  EL   DRAGLL+ V+++F E  L++  A++TT G +A + F + +  G
Sbjct: 780 KQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQG 834

Length = 854

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 343 CCEDRAGLLSDVTRIFRENGLSVTRAEV-TTRGSQAVNVFYVVDASGNPVKS-ETIESVR 400
              DR GL + +     + GL++  A + TTR   A++ F V+D  G P+   E +  +R
Sbjct: 7   YTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIR 66

Query: 401 KEI 403
           + +
Sbjct: 67  EAL 69

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 44  ANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSL 103
            ++ G L ++ +V  +  L + RA IS+ G+  ++VF+VTD NGN +    + E ++Q +
Sbjct: 9   EDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTI-EAVRQEI 67

Query: 104 GP 105
           GP
Sbjct: 68  GP 69

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 299 AYQEYYIRHVDGNPISSEAE----RQRVINCLEAAIKRRTSEGISLELCCEDRAGLLSDV 354
           AY +Y++R      I+  AE           L      R S G  + +   D+ GL + V
Sbjct: 627 AYDDYFLRFTHK-EIAWHAESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKV 685

Query: 355 TRIFRENGLSVTRAEV-TTRGSQAVNVFYVVDASGNPVKSE 394
                   LSV  A+V TT+   A++ F V D  G+P  +E
Sbjct: 686 AGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAE 726

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLA 187
           I +   DRPGLL+++  V+++ K N++     T +  +A  + +T E     + D + LA
Sbjct: 1   IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLA-TIRLTLE-----VRDLEHLA 54

Query: 188 KI 189
           +I
Sbjct: 55  RI 56

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|153166 cd04894, ACT_ACR-like_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query: 344 CEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNP 390
           C D+ GL  D+ RI  E GL++TR + +T G     VF+VV    + 
Sbjct: 7   CPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSI 53

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 69

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 23/157 (14%)

Query: 24  PRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYI--SSDGEWFMDVFH 81
             V + N  +R  T I +   ++    L++V  +    L I  A I  S DG + +D F 
Sbjct: 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDG-YVLDSFI 723

Query: 82  VTDQNGNKLSEDDVSERIQQSL----------GPRARSFRSLRRSVGVQAAL-------- 123
           VT+ NG KL E D   +++Q+L                   L+    V+  +        
Sbjct: 724 VTELNG-KLLEFDRRRQLEQALTKALNTNKLKKLNLEENHKLQ-HFHVKTEVRFLNEEKQ 781

Query: 124 EHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT 160
           E T +EL   DR GLL++V  V S+L  N++ A++ T
Sbjct: 782 EQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITT 818

Length = 854

>gnl|CDD|153199 cd04927, ACT_ACR-like_2, Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEV-TTRGSQAVNVFYVVDA 386
           L+L C DR GLL DVT +  E  L++ R +V TT   + +++F++ DA
Sbjct: 3   LKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA 50

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 76

>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 20/109 (18%)

Query: 70  SSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSL-------GPRARSFRSLRR-----SV 117
           S DG   MD F V + +G+ LS+D   + I+++L        P+    R L       +V
Sbjct: 737 SRDG-MAMDTFIVLEPDGSPLSQDRH-QVIRKALEQALTQSSPQPPKPRRLPAKLRHFNV 794

Query: 118 GVQAAL------EHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT 160
             + +         + +EL   D+PGLL+ V  + +DL  ++ GA + T
Sbjct: 795 PTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITT 843

Length = 884

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 36  ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYI--SSDGEWFMDVFHVTDQNGNKLSED 93
            T + + + ++ G    +   L+ L L I  A I  + DG + +D F V D +G  + E 
Sbjct: 1   GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDG-YALDTFVVLDPDGEPIGER 59

Query: 94  DVSERIQQSL 103
           +   RI+++L
Sbjct: 60  ERLARIREAL 69

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|205914 pfam13740, ACT_6, ACT domain

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLA 187
           I  TG DRPGL + +  VL++  CN++ +        +   + ++           D +A
Sbjct: 5   ITATGPDRPGLTASLTRVLAEHGCNILDSRQAVIGGELTLGMLVSG--------PWDAIA 56

Query: 188 KIKRLLL 194
           ++++ LL
Sbjct: 57  RLEKALL 63

ACT domains bind to amino acids and regulate associated enzyme domains. Length = 76

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 42/199 (21%), Positives = 71/199 (35%), Gaps = 32/199 (16%)

Query: 134 DRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLL 193
           DRP L + V A LS    +++ A+++T     A   +I  E  G P+++    A    L+
Sbjct: 693 DRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGELI 752

Query: 194 LYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVES 253
             +L G                 +  R  +                       P VT+  
Sbjct: 753 EALLSGK---------AQPPRRRRIPRKLRHFPI------------------PPRVTILP 785

Query: 254 CTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVY--HATVIAESPEAYQEYYIRHVDGN 311
                 TV+ +R  DRP LL        D+   ++    T   E  E    + +   DG 
Sbjct: 786 TASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDV--FIVTDADGQ 843

Query: 312 PISSEAERQRVINCLEAAI 330
            +++E  RQ ++  L  A+
Sbjct: 844 ALNAE-LRQSLLQRLLEAL 861

Length = 867

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 331 KRRTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEV-TTRGSQAVNVFYVVDASGN 389
            R  S G  + +   DR  L + V       GLS+  A++ TTR   A++ F V++  G 
Sbjct: 678 VRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGF 737

Query: 390 PVKSETIESVRKEIGLTILRVKDDAYSKSPPQESGRFS 427
           PV+ +   ++R E+   +L        K+ P    R  
Sbjct: 738 PVEEDRRAALRGELIEALLS------GKAQPPRRRRIP 769

Length = 867

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 22/71 (30%), Positives = 41/71 (57%)

Query: 23  PPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHV 82
           PPRV   + ++  AT+++V +A++ G L  L + L    + +R A +++ G   +DVF+V
Sbjct: 694 PPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYV 753

Query: 83  TDQNGNKLSED 93
           T   G  L++ 
Sbjct: 754 TGAAGGPLADA 764

Length = 774

>gnl|CDD|153199 cd04927, ACT_ACR-like_2, Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 38  LIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS--DGEWFMDVFHVTDQN---GNKLSE 92
           L+K+  ++++G L ++ +VL +L+L I R  +S+  DG   +D+F +TD       K   
Sbjct: 2   LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGR-VLDLFFITDARELLHTKKRR 60

Query: 93  DDVSERIQQSLGP 105
           ++  + ++  LG 
Sbjct: 61  EETYDYLRAVLGD 73

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 76

>gnl|CDD|222030 pfam13291, ACT_4, ACT domain

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 12/43 (27%), Positives = 27/43 (62%)

Query: 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASV 168
             +E+   DRPGLL+++  V+S+ K N++     + ++ +A++
Sbjct: 5   ADLEIEAIDRPGLLADITTVISNEKANILSVNAESKDNGIATI 47

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 77

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 50/220 (22%), Positives = 75/220 (34%), Gaps = 31/220 (14%)

Query: 105 PRARSFRSLRRSVGVQAAL---EHTTIELT--GRDRPGLLSEVFAVLSDLKCNVMGAEVW 159
           P   +  +L    GV   +   +   +E+T    DR GLLS+   VL+  +  V  A V 
Sbjct: 574 PLDPAQLALAADGGVHVEIAPADPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVR 633

Query: 160 THNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKER 219
           +H+   A + ++ S   G P  D   L   ++ L   L GD D                 
Sbjct: 634 SHDGV-AVLEFVVSPRFGSPP-DAALL---RQDLRRALDGDLDVL--------------A 674

Query: 220 RLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCT 279
           RL     A R+           +    P V          TV+ +R  DRP LL      
Sbjct: 675 RL-----AAREAAAAAVPVRRPAA--PPRVLWLDGASPDATVLEVRAADRPGLLARLARA 727

Query: 280 LTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAER 319
           L      V  A V     +    +Y+    G P++     
Sbjct: 728 LERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADARAA 767

Length = 774

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	450
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.96
PRK05007	884	PII uridylyl-transferase; Provisional	99.96
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.94
PRK05007	884	PII uridylyl-transferase; Provisional	99.94
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.94
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.94
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.94
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.93
PRK04374	869	PII uridylyl-transferase; Provisional	99.92
PRK03381	774	PII uridylyl-transferase; Provisional	99.92
PRK03059	856	PII uridylyl-transferase; Provisional	99.92
PRK04374	869	PII uridylyl-transferase; Provisional	99.92
PRK03381	774	PII uridylyl-transferase; Provisional	99.92
PRK05092	931	PII uridylyl-transferase; Provisional	99.92
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.91
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.91
PRK03059	856	PII uridylyl-transferase; Provisional	99.91
PRK05092	931	PII uridylyl-transferase; Provisional	99.91
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.82
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.81
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.78
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.73
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.67
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.66
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.63
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.6
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.59
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.58
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.54
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.54
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.52
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.49
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.49
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.45
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.44
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.43
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.3
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.3
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.24
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.21
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.19
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.07
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.88
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.87
COG4747	142	ACT domain-containing protein [General function pr	98.73
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.64
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.61
COG4747	142	ACT domain-containing protein [General function pr	98.38
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.35
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.33
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.32
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.31
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.3
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.29
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.29
PRK07431	587	aspartate kinase; Provisional	98.24
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.05
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.03
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.98
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.97
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.89
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.89
PRK00194	90	hypothetical protein; Validated	97.87
PRK00194	90	hypothetical protein; Validated	97.85
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.82
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.78
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.72
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.71
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.68
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.48
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.41
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.41
COG3830	90	ACT domain-containing protein [Signal transduction	97.39
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.39
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.37
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.29
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.28
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.24
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.17
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.09
COG3830	90	ACT domain-containing protein [Signal transduction	97.05
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.05
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.04
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.03
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.01
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.99
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.98
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.97
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.97
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.95
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.95
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.93
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.92
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.9
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.87
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.85
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.8
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.78
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.75
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.75
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.74
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.72
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.7
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.68
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.62
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.59
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.57
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.56
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.53
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.47
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.46
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.41
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.39
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.31
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.26
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.19
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.16
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.15
PRK08577	136	hypothetical protein; Provisional	96.03
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.01
PRK08577	136	hypothetical protein; Provisional	95.99
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.89
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	95.89
PRK07431	587	aspartate kinase; Provisional	95.87
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.86
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	95.85
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	95.84
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.83
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	95.82
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	95.79
cd02116	60	ACT ACT domains are commonly involved in specifica	95.77
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.75
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.72
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	95.68
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.67
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	95.58
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	95.52
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.47
PRK04435	147	hypothetical protein; Provisional	95.44
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	95.33
PRK04435	147	hypothetical protein; Provisional	95.27
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	95.18
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.18
cd02116	60	ACT ACT domains are commonly involved in specifica	95.13
PRK06635	404	aspartate kinase; Reviewed	95.09
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	95.09
PRK07334	403	threonine dehydratase; Provisional	95.02
PRK07334	403	threonine dehydratase; Provisional	95.0
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	94.91
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	94.46
PRK11899	279	prephenate dehydratase; Provisional	94.37
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	94.32
PRK06635	404	aspartate kinase; Reviewed	93.85
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	93.6
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	93.55
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	93.54
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	93.45
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	93.13
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	93.08
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	93.04
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	92.95
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	92.84
PRK06291	465	aspartate kinase; Provisional	92.6
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	92.58
PRK08210	403	aspartate kinase I; Reviewed	92.5
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	92.5
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	92.24
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	92.15
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	92.1
PRK09034	454	aspartate kinase; Reviewed	91.9
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	91.87
PRK08210	403	aspartate kinase I; Reviewed	91.86
PRK08818	370	prephenate dehydrogenase; Provisional	91.85
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	91.84
PRK09034	454	aspartate kinase; Reviewed	91.38
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	91.31
COG1707	218	ACT domain-containing protein [General function pr	91.2
PRK06291	465	aspartate kinase; Provisional	90.76
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	90.55
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	90.55
PRK06545	359	prephenate dehydrogenase; Validated	90.46
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	90.44
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	90.16
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	90.03
PRK06382	406	threonine dehydratase; Provisional	90.01
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	89.69
PRK09181	475	aspartate kinase; Validated	89.4
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	89.31
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	89.11
PRK06545	359	prephenate dehydrogenase; Validated	88.93
PRK06382	406	threonine dehydratase; Provisional	88.66
PRK12483	521	threonine dehydratase; Reviewed	88.63
PRK06349	426	homoserine dehydrogenase; Provisional	88.62
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	88.54
COG1707	218	ACT domain-containing protein [General function pr	88.54
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	87.69
PLN02551	521	aspartokinase	87.66
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	87.62
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	87.54
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	87.25
PRK09181	475	aspartate kinase; Validated	87.14
PRK09084	448	aspartate kinase III; Validated	86.92
PRK12483	521	threonine dehydratase; Reviewed	86.63
PLN02317	382	arogenate dehydratase	86.52
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	86.44
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	86.34
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	86.27
PLN02551	521	aspartokinase	85.79
PRK14646	155	hypothetical protein; Provisional	85.63
PRK14630	143	hypothetical protein; Provisional	85.54
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	85.45
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	85.03
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	84.56
PRK14636	176	hypothetical protein; Provisional	84.48
PRK14634	155	hypothetical protein; Provisional	84.47
PRK08198	404	threonine dehydratase; Provisional	84.38
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	84.18
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	84.11
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	84.03
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	83.87
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	83.8
PRK08818	370	prephenate dehydrogenase; Provisional	83.47
PRK06349	426	homoserine dehydrogenase; Provisional	83.05
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	82.97
PRK11899	279	prephenate dehydratase; Provisional	82.82
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	82.28
PRK14645	154	hypothetical protein; Provisional	82.03
PRK08198	404	threonine dehydratase; Provisional	81.93
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	81.33
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	81.17
PRK09224	504	threonine dehydratase; Reviewed	80.91
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	80.13
PRK11898	283	prephenate dehydratase; Provisional	80.1

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=1.9e-28  Score=273.26  Aligned_cols=164  Identities=23%  Similarity=0.408  Sum_probs=148.6

Q ss_pred             CCCCCEEEEEeccCCceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEecCCCCCCCcHHHHHH
Q 044728          243 GRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIA-ESPEAYQEYYIRHVDGNPISSEAERQR  321 (450)
Q Consensus       243 ~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~  321 (450)
                      ...+|.|.+++.++.++|+|+|+++||||||++|+++|+.+|+||++|+|.| .+|+++|+|+|++++|.++. ++++++
T Consensus       661 ~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~  739 (854)
T PRK01759        661 FRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQ  739 (854)
T ss_pred             cCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHH
Confidence            3457889999999999999999999999999999999999999999999998 69999999999999999885 458899


Q ss_pred             HHHHHHHHHhcc--------C--------------------CCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec
Q 044728          322 VINCLEAAIKRR--------T--------------------SEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR  373 (450)
Q Consensus       322 l~~~L~~~L~~r--------~--------------------~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~  373 (450)
                      |++.|.++|..+        .                    ...|+|||.|.|||||||+|+++|.++|++|++|||+|+
T Consensus       740 l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~  819 (854)
T PRK01759        740 LEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTI  819 (854)
T ss_pred             HHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEccc
Confidence            999999887421        0                    024899999999999999999999999999999999999


Q ss_pred             CceeeeEEEEEeCCCCCCChHHHHHHHHHHhhcc
Q 044728          374 GSQAVNVFYVVDASGNPVKSETIESVRKEIGLTI  407 (450)
Q Consensus       374 g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~  407 (450)
                      |++|+|+|||++.+|.|++++++++|+++|++++
T Consensus       820 gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l  853 (854)
T PRK01759        820 GEKAEDFFILTNQQGQALDEEERKALKSRLLSNL  853 (854)
T ss_pred             CceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence            9999999999999999999776699999998754

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=5.8e-28  Score=270.25  Aligned_cols=163  Identities=26%  Similarity=0.416  Sum_probs=148.7

Q ss_pred             CCCEEEEEeccCCceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEecCCCCCCCcHHHHHHHH
Q 044728          245 SKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE-SPEAYQEYYIRHVDGNPISSEAERQRVI  323 (450)
Q Consensus       245 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~l~  323 (450)
                      .+|.|.+++.++.++++|+|+++||||||++|+++|+.+|+||++|+|+|. +|+++|+|+|++.+|.++. ++++++|+
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~-~~~~~~I~  765 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS-QDRHQVIR  765 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCC-HHHHHHHH
Confidence            678899999999999999999999999999999999999999999999987 6799999999999999885 45889999


Q ss_pred             HHHHHHHhcc---------C--------------------CCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC
Q 044728          324 NCLEAAIKRR---------T--------------------SEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG  374 (450)
Q Consensus       324 ~~L~~~L~~r---------~--------------------~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g  374 (450)
                      +.|.++|..+         .                    +..|+|||.|.|||||||+|+++|+++|++|++|||+|+|
T Consensus       766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g  845 (884)
T PRK05007        766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG  845 (884)
T ss_pred             HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence            9999888422         0                    1248999999999999999999999999999999999999


Q ss_pred             ceeeeEEEEEeCCCCCCChHHHHHHHHHHhhccc
Q 044728          375 SQAVNVFYVVDASGNPVKSETIESVRKEIGLTIL  408 (450)
Q Consensus       375 ~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l  408 (450)
                      ++|+|+|||++.+|.|++++.+++|+++|++++-
T Consensus       846 era~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~  879 (884)
T PRK05007        846 ERVEDLFILATADRRALNEELQQELRQRLTEALN  879 (884)
T ss_pred             ceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999997788999999998663

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.94  E-value=7.8e-26  Score=252.36  Aligned_cols=174  Identities=26%  Similarity=0.345  Sum_probs=148.0

Q ss_pred             CCCCEEEEeecCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHH
Q 044728           21 MNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERI   99 (450)
Q Consensus        21 ~~~p~V~i~~~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i   99 (450)
                      ..+|.|.+++..+.++++|+|+++||||||++|+++|..+|+||++|+|+| .+|+++|+|+|.+.+|.++.+ +.+++|
T Consensus       662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~-~~~~~l  740 (854)
T PRK01759        662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEF-DRRRQL  740 (854)
T ss_pred             CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCH-HHHHHH
Confidence            357899999999999999999999999999999999999999999999987 899999999999999998853 455555


Q ss_pred             HH----HhCcCccCCC-----------Ccceee--eccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC
Q 044728          100 QQ----SLGPRARSFR-----------SLRRSV--GVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN  162 (450)
Q Consensus       100 ~~----~L~~~~~~~~-----------~~~r~v--~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~  162 (450)
                      ++    +|.+......           ..+.+|  +++.+..+|+|+|.++||||||++|+++|.++|++|+.|+|.|.|
T Consensus       741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~g  820 (854)
T PRK01759        741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIG  820 (854)
T ss_pred             HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccC
Confidence            54    4543321100           011133  457888999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728          163 SRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL  197 (450)
Q Consensus       163 ~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l  197 (450)
                      +++.|+|||++ .+|.+++++++ +.|+++|.++|
T Consensus       821 erv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l  853 (854)
T PRK01759        821 EKAEDFFILTN-QQGQALDEEER-KALKSRLLSNL  853 (854)
T ss_pred             ceEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHh
Confidence            99999999999 68999977666 99999998776

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=9.7e-26  Score=252.40  Aligned_cols=175  Identities=22%  Similarity=0.294  Sum_probs=149.3

Q ss_pred             CCCEEEEeecCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHH----
Q 044728           22 NPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVS----   96 (450)
Q Consensus        22 ~~p~V~i~~~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~----   96 (450)
                      .+|.|.+++..++++++|+|+++||||||++|+++|..+|+||++|+|+| .+|+++|+|+|.+.+|.++++ +.+    
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~-~~~~~I~  765 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQ-DRHQVIR  765 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCH-HHHHHHH
Confidence            57899999999999999999999999999999999999999999999987 678999999999999998853 344    


Q ss_pred             HHHHHHhCcCccCC------C------Ccceee--eccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC
Q 044728           97 ERIQQSLGPRARSF------R------SLRRSV--GVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN  162 (450)
Q Consensus        97 ~~i~~~L~~~~~~~------~------~~~r~v--~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~  162 (450)
                      +.|+++|.+.....      +      ..+.+|  +++.+..+|+|+|.++||||||++|+++|.++|++|++|+|.|.|
T Consensus       766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g  845 (884)
T PRK05007        766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG  845 (884)
T ss_pred             HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence            44455554432110      0      011123  457888999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhhc
Q 044728          163 SRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKG  199 (450)
Q Consensus       163 ~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~~  199 (450)
                      +++.|+|||++ ..|.+++ +++.+.|+++|..+|..
T Consensus       846 era~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        846 ERVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             ceEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence            99999999999 6889886 77889999999998864

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=5.5e-26  Score=241.37  Aligned_cols=165  Identities=28%  Similarity=0.412  Sum_probs=148.0

Q ss_pred             CCCCEEEEEeccCCceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEecCCCCCCCcHHHHHHH
Q 044728          244 RSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE-SPEAYQEYYIRHVDGNPISSEAERQRV  322 (450)
Q Consensus       244 ~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~l  322 (450)
                      .++|.|.+...+..+.|+|+|+++|+|.||+.++.++...|+||++|+|+|+ +|+++|+|+|.+++|.++++ ++...+
T Consensus       669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~-dr~~~~  747 (867)
T COG2844         669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEE-DRRAAL  747 (867)
T ss_pred             ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccch-hHHHHH
Confidence            5678898888888899999999999999999999999999999999999985 89999999999999999884 477888


Q ss_pred             HHHHHHHHhc---------cC----------C----------CceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec
Q 044728          323 INCLEAAIKR---------RT----------S----------EGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR  373 (450)
Q Consensus       323 ~~~L~~~L~~---------r~----------~----------~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~  373 (450)
                      +..|.+++..         +.          |          +.|+|||++.||||||++|+++|++++++|++|||+|+
T Consensus       748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~  827 (867)
T COG2844         748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF  827 (867)
T ss_pred             HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence            8888777621         10          1          24899999999999999999999999999999999999


Q ss_pred             CceeeeEEEEEeCCCCCCChHHHHHHHHHHhhcccc
Q 044728          374 GSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILR  409 (450)
Q Consensus       374 g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l~  409 (450)
                      ||+|+|+|||++..|.+++++.++.+.+.+.++++.
T Consensus       828 GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~  863 (867)
T COG2844         828 GERVEDVFIVTDADGQALNAELRQSLLQRLLEALLP  863 (867)
T ss_pred             cccceeEEEEeccccccCCHHHHHHHHHHHHHHhcc
Confidence            999999999999999999888888999988886653

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.94  E-value=1.7e-25  Score=250.46  Aligned_cols=179  Identities=22%  Similarity=0.349  Sum_probs=149.4

Q ss_pred             CCCCEEEEeecCC---CCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCC-chHH
Q 044728           21 MNPPRVTVDNTSN---RKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLS-EDDV   95 (450)
Q Consensus        21 ~~~p~V~i~~~~~---~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~-~~~~   95 (450)
                      ...|.|.+++...   +++++|+|+++||||||++||++|..+|+||++|+|+| .+|+++|+|+|++++|.++. ++++
T Consensus       686 ~~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r  765 (895)
T PRK00275        686 DGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPAR  765 (895)
T ss_pred             CCCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHH
Confidence            3468888888776   58999999999999999999999999999999999986 78999999999999999854 3345


Q ss_pred             HHHHHHH----hCcCccCC-------------CCcceee--eccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEE
Q 044728           96 SERIQQS----LGPRARSF-------------RSLRRSV--GVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGA  156 (450)
Q Consensus        96 ~~~i~~~----L~~~~~~~-------------~~~~r~v--~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A  156 (450)
                      +++|++.    |.+.....             ...+..|  .++.+.++|+|+|+++||||||++|+++|+.+|+||++|
T Consensus       766 ~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~A  845 (895)
T PRK00275        766 IEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNA  845 (895)
T ss_pred             HHHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEe
Confidence            5555554    44332100             0011123  346778999999999999999999999999999999999


Q ss_pred             EEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhhcc
Q 044728          157 EVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKGD  200 (450)
Q Consensus       157 ~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~~~  200 (450)
                      +|+|.|+++.|+|+|++ .+|.++.+++++++|+++|.++|.++
T Consensus       846 kI~T~g~~v~D~F~V~d-~~g~~l~~~~~~~~l~~~L~~~L~~~  888 (895)
T PRK00275        846 KIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQDAICEQLDAR  888 (895)
T ss_pred             EEEecCCEEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999 68999988889999999999999753

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.94  E-value=2.7e-25  Score=249.24  Aligned_cols=165  Identities=26%  Similarity=0.377  Sum_probs=149.0

Q ss_pred             CCCCEEEEEeccCCceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEecCCCCCCCcHHHHHHH
Q 044728          244 RSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIA-ESPEAYQEYYIRHVDGNPISSEAERQRV  322 (450)
Q Consensus       244 ~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l  322 (450)
                      ...|.|.+.+....++|+|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|++.+|.++.+++++++|
T Consensus       653 ~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i  732 (850)
T TIGR01693       653 SGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQEL  732 (850)
T ss_pred             CCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHH
Confidence            356888888877799999999999999999999999999999999999995 5899999999999999988877789999


Q ss_pred             HHHHHHHHhcc------------C--------------------CCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEE
Q 044728          323 INCLEAAIKRR------------T--------------------SEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEV  370 (450)
Q Consensus       323 ~~~L~~~L~~r------------~--------------------~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI  370 (450)
                      ++.|.++|..+            .                    +..|+|+|.+.|||||||+|+++|+++|++|++|+|
T Consensus       733 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i  812 (850)
T TIGR01693       733 LQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKI  812 (850)
T ss_pred             HHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEE
Confidence            99998887321            0                    014899999999999999999999999999999999


Q ss_pred             eecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhccc
Q 044728          371 TTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTIL  408 (450)
Q Consensus       371 ~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l  408 (450)
                      +|+|++++|+|||++..|.|+++++++.|+++|+++++
T Consensus       813 ~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l~  850 (850)
T TIGR01693       813 TTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASVA  850 (850)
T ss_pred             EecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999998888999999988653

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.93  E-value=1e-24  Score=244.25  Aligned_cols=183  Identities=19%  Similarity=0.283  Sum_probs=157.0

Q ss_pred             CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCC-CHHHHHHHHHHHHHhhhcc
Q 044728          123 LEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITSEATGLPID-DPDTLAKIKRLLLYVLKGD  200 (450)
Q Consensus       123 ~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~~~~g~~i~-~~~~~~~l~~~L~~~l~~~  200 (450)
                      .+.++|.|+++||||||++||++|+.+|+||++|+|+|. +|.+.|+|+|.+ .+|.++. +++++++|++.|.++|.++
T Consensus       702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L~~~  780 (895)
T PRK00275        702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEALRNP  780 (895)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHHcCC
Confidence            589999999999999999999999999999999999875 789999999999 5788753 4589999999999999986


Q ss_pred             ccccccccccccccchhhhHHHHhhhccccccccccCCCCCCCCCCCEEEEEeccCCceEEEEEEecCCcChHHHHHHHH
Q 044728          201 RDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTL  280 (450)
Q Consensus       201 ~d~~~~~~~~s~~~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L  280 (450)
                      .+.. ...         .+|.....   +            ....+|.|.+++..+.++|+|+|+++||||||++|+++|
T Consensus       781 ~~~~-~~~---------~~~~~~~~---~------------~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L  835 (895)
T PRK00275        781 DDYP-TII---------QRRVPRQL---K------------HFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIF  835 (895)
T ss_pred             Cccc-hhh---------hhhhhhhc---c------------CCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHH
Confidence            6421 111         11211110   1            123479999999999999999999999999999999999


Q ss_pred             HhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh
Q 044728          281 TDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIK  331 (450)
Q Consensus       281 ~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~  331 (450)
                      +.+|+||++|+|.|.+|+++|+|+|++.+|.++.+++++++|+++|.++|.
T Consensus       836 ~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~  886 (895)
T PRK00275        836 LEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLD  886 (895)
T ss_pred             HHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999998887789999999998884

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=6.3e-24  Score=236.55  Aligned_cols=176  Identities=23%  Similarity=0.275  Sum_probs=144.9

Q ss_pred             CCCCEEEEee-cCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCc-hHHHH
Q 044728           21 MNPPRVTVDN-TSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSE-DDVSE   97 (450)
Q Consensus        21 ~~~p~V~i~~-~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~-~~~~~   97 (450)
                      ...|.|.+.. .+.+++++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|.+... .++.+
T Consensus       674 ~~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~  753 (869)
T PRK04374        674 IGQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAA  753 (869)
T ss_pred             CCCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHH
Confidence            3467787765 77789999999999999999999999999999999999997 889999999999998864222 23555


Q ss_pred             HHHHHhCcCccC-CC------------Ccceeee--ccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC
Q 044728           98 RIQQSLGPRARS-FR------------SLRRSVG--VQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN  162 (450)
Q Consensus        98 ~i~~~L~~~~~~-~~------------~~~r~v~--~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~  162 (450)
                      .|+++|.+.... .+            ..+.+|.  ++.+.+.|+|+|.+.||||||++|+++|+.+|+||++|+|+|.|
T Consensus       754 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g  833 (869)
T PRK04374        754 ALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFG  833 (869)
T ss_pred             HHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecC
Confidence            666667653210 00            0111343  46778899999999999999999999999999999999999999


Q ss_pred             CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728          163 SRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK  198 (450)
Q Consensus       163 ~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~  198 (450)
                      +++.|+|+|++ .+|.++.++++ +.|+++|.++|.
T Consensus       834 ~~a~D~F~V~d-~~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        834 ERAEDQFQITD-EHDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             CEEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhc
Confidence            99999999999 68888866666 999999988874

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=4.6e-24  Score=236.04  Aligned_cols=154  Identities=27%  Similarity=0.376  Sum_probs=135.4

Q ss_pred             CCCEEEEEeccCCceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHH
Q 044728          245 SKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVIN  324 (450)
Q Consensus       245 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~  324 (450)
                      .++.|.+.+.. .+.++|+|+++||||||++|+++|+.+|+||++|+|+|.+|+++|+|+|.++.|.+.    .++++++
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~----~~~~l~~  660 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPP----DAALLRQ  660 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcc----hHHHHHH
Confidence            46788888888 899999999999999999999999999999999999999999999999999888754    3566777


Q ss_pred             HHHHHHhc----------c--C----------------------CCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEE
Q 044728          325 CLEAAIKR----------R--T----------------------SEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEV  370 (450)
Q Consensus       325 ~L~~~L~~----------r--~----------------------~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI  370 (450)
                      .|.++|..          +  .                      ...|+|+|.+.||||||++|+++|+++|+||++|+|
T Consensus       661 ~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI  740 (774)
T PRK03381        661 DLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARV  740 (774)
T ss_pred             HHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEE
Confidence            77665521          1  0                      013899999999999999999999999999999999


Q ss_pred             eecCceeeeEEEEEeCCCCCCChHHHHHHHHHHh
Q 044728          371 TTRGSQAVNVFYVVDASGNPVKSETIESVRKEIG  404 (450)
Q Consensus       371 ~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~  404 (450)
                      .|.|++++|+|||++.+|.++++. +++|+++|+
T Consensus       741 ~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~  773 (774)
T PRK03381        741 ATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL  773 (774)
T ss_pred             eecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence            999999999999999999999876 778887775

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=6.5e-24  Score=236.82  Aligned_cols=173  Identities=17%  Similarity=0.252  Sum_probs=141.8

Q ss_pred             CCCCEEEEeecCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHH
Q 044728           21 MNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERI   99 (450)
Q Consensus        21 ~~~p~V~i~~~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i   99 (450)
                      ...|.|.+++.+.++.++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|. ...++.+++|
T Consensus       663 ~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i  741 (856)
T PRK03059        663 TDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLV  741 (856)
T ss_pred             CCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHH
Confidence            357888899999999999999999999999999999999999999999986 88999999999998877 3344455555


Q ss_pred             ----HHHhCcCccCC----CC---------cceeee--ccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728          100 ----QQSLGPRARSF----RS---------LRRSVG--VQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT  160 (450)
Q Consensus       100 ----~~~L~~~~~~~----~~---------~~r~v~--~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t  160 (450)
                          +++|.+.....    ..         .+..|.  ++...+.|+|+|+++||||||++||++|+.+|+||++|+|+|
T Consensus       742 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T  821 (856)
T PRK03059        742 EHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT  821 (856)
T ss_pred             HHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee
Confidence                45554432100    00         111233  466778999999999999999999999999999999999999


Q ss_pred             eCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728          161 HNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK  198 (450)
Q Consensus       161 ~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~  198 (450)
                      .++++.|+|+|++.    ++.+++++++|++.|.++|.
T Consensus       822 ~~~~v~DvF~V~~~----~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        822 LGERVEDTFLIDGS----GLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             cCCEEEEEEEEcCC----CCCCHHHHHHHHHHHHHHhc
Confidence            99999999999652    24577899999999988764

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=1.1e-23  Score=234.56  Aligned_cols=181  Identities=23%  Similarity=0.248  Sum_probs=152.2

Q ss_pred             cCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728          120 QAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK  198 (450)
Q Consensus       120 ~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~  198 (450)
                      .+..+.+.|.|+++|+||||++||++|+.+|+||++|+|+|. +|.+.|+|+|.+ +.|.+   ++++++|++.|.++|.
T Consensus       685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~-~~~~~---~~~~~~i~~~l~~~l~  760 (869)
T PRK04374        685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLP-QDTYA---DGDPQRLAAALRQVLA  760 (869)
T ss_pred             ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeC-CCCCC---hHHHHHHHHHHHHHHc
Confidence            566789999999999999999999999999999999999984 899999999999 46653   3578889999999999


Q ss_pred             ccccccccccccccccchhhhHHHHhhhccccccccccCCCCCCCCCCCEEEEEeccCCceEEEEEEecCCcChHHHHHH
Q 044728          199 GDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVC  278 (450)
Q Consensus       199 ~~~d~~~~~~~~s~~~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~  278 (450)
                      |+.+...    .       .+|.+..  ..+            .+..+|.|.+++..+.++|+|+|+++||||||++|++
T Consensus       761 ~~~~~~~----~-------~~~~~~~--~~~------------~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~  815 (869)
T PRK04374        761 GDLQKVR----P-------ARRAVPR--QLR------------HFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAH  815 (869)
T ss_pred             CCCCccc----c-------ccccCcc--ccc------------CCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHH
Confidence            8653210    1       1110000  001            2345799999999999999999999999999999999


Q ss_pred             HHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHH
Q 044728          279 TLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAI  330 (450)
Q Consensus       279 ~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L  330 (450)
                      +|+.+|+||++|+|.|.+|+++|+|+|++.+|.++.++++ +.|+++|.++|
T Consensus       816 ~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l  866 (869)
T PRK04374        816 VLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESAR-QALRDALCACL  866 (869)
T ss_pred             HHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence            9999999999999999999999999999999998776644 89999998876

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=1.4e-23  Score=232.24  Aligned_cols=169  Identities=24%  Similarity=0.275  Sum_probs=143.0

Q ss_pred             CCCEEEEeecCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHH
Q 044728           22 NPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQ  101 (450)
Q Consensus        22 ~~p~V~i~~~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~  101 (450)
                      .+|.|.+++.. ++.++|+|+++||||||++||++|..+||||++|+|+|.+|+++|+|+|.++.|.+...+++.+.|++
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~  664 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRR  664 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHH
Confidence            67899999888 99999999999999999999999999999999999999999999999999998886655557778888


Q ss_pred             HhCcCccC--C---C------C------cceeee--ccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC
Q 044728          102 SLGPRARS--F---R------S------LRRSVG--VQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN  162 (450)
Q Consensus       102 ~L~~~~~~--~---~------~------~~r~v~--~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~  162 (450)
                      +|.+....  .   .      .      .+..|.  ++...+.|+|+|.++||||||++|+++|+++|+||++|+|+|.|
T Consensus       665 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g  744 (774)
T PRK03381        665 ALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLG  744 (774)
T ss_pred             HHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecC
Confidence            88764210  0   0      0      011233  35666789999999999999999999999999999999999999


Q ss_pred             CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728          163 SRMASVVYITSEATGLPIDDPDTLAKIKRLLL  194 (450)
Q Consensus       163 ~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~  194 (450)
                      +++.|+|+|++ .+|.+++++  ++.|+++|.
T Consensus       745 ~~a~D~F~V~d-~~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        745 ADVVDVFYVTG-AAGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             CeEEEEEEEEC-CCCCcCchH--HHHHHHHhh
Confidence            99999999999 689988654  677777663

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=2.3e-23  Score=235.18  Aligned_cols=179  Identities=28%  Similarity=0.363  Sum_probs=151.8

Q ss_pred             CCCEEEEeecCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHH
Q 044728           22 NPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERIQ  100 (450)
Q Consensus        22 ~~p~V~i~~~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i~  100 (450)
                      .++.|.+++..++++++|+|+++||||||++|+++|..+|+||++|+|+| .+|+++|+|+|++++|.++.+++.+++|+
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~  797 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA  797 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence            55788899999999999999999999999999999999999999999987 78999999999999998776666666665


Q ss_pred             HHh----CcCccCC-----C-Cc-----------ceeeeccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 044728          101 QSL----GPRARSF-----R-SL-----------RRSVGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVW  159 (450)
Q Consensus       101 ~~L----~~~~~~~-----~-~~-----------~r~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~  159 (450)
                      +.|    .+...+.     . .+           ...++++.+.+.|+|+|.++||||||++|+++|+++|+||.+|+|.
T Consensus       798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~  877 (931)
T PRK05092        798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA  877 (931)
T ss_pred             HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence            554    3221100     0 01           1123346777899999999999999999999999999999999999


Q ss_pred             eeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhhccc
Q 044728          160 THNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKGDR  201 (450)
Q Consensus       160 t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~~~~  201 (450)
                      |.++++.|+|+|++ .+|.++.++++++.|+++|.++|.++.
T Consensus       878 T~~~~~~D~F~v~d-~~g~~i~~~~~~~~l~~~L~~~L~~~~  918 (931)
T PRK05092        878 TYGERAVDVFYVTD-LFGLKITNEARQAAIRRALLAALAEGE  918 (931)
T ss_pred             EcCCEEEEEEEEeC-CCCCcCCCHHHHHHHHHHHHHHhcCcc
Confidence            99999999999999 689999888899999999999997643

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.2e-23  Score=223.78  Aligned_cols=175  Identities=22%  Similarity=0.295  Sum_probs=142.7

Q ss_pred             CCCCEEEEeecCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHH
Q 044728           21 MNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERI   99 (450)
Q Consensus        21 ~~~p~V~i~~~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i   99 (450)
                      ..+|+|.++..++.+.++|+||+||+|.||+.+|.++...|+||++|+|+| .+||++|+|+|.+++|.++..+ +...+
T Consensus       669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~d-r~~~~  747 (867)
T COG2844         669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEED-RRAAL  747 (867)
T ss_pred             ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchh-HHHHH
Confidence            467999999999999999999999999999999999999999999999986 8899999999999999988743 44444


Q ss_pred             HHHhC----cCccCCCC------------cceeee--ccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee
Q 044728          100 QQSLG----PRARSFRS------------LRRSVG--VQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH  161 (450)
Q Consensus       100 ~~~L~----~~~~~~~~------------~~r~v~--~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~  161 (450)
                      +..|.    .....++.            .+..|.  ++.....|+++|.+.||||||+.++++|+++|++|++|+|+|.
T Consensus       748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~  827 (867)
T COG2844         748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF  827 (867)
T ss_pred             HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence            44332    22111110            111233  3667789999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728          162 NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK  198 (450)
Q Consensus       162 ~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~  198 (450)
                      |++++|+|+|++ ..|.++. ++..+.+.+.|.+++.
T Consensus       828 GErveD~F~vt~-~~~~~l~-~~~~q~l~~~ll~al~  862 (867)
T COG2844         828 GERVEDVFIVTD-ADGQALN-AELRQSLLQRLLEALL  862 (867)
T ss_pred             cccceeEEEEec-cccccCC-HHHHHHHHHHHHHHhc
Confidence            999999999999 6898884 4455666666655554

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.91  E-value=2.3e-23  Score=233.69  Aligned_cols=175  Identities=23%  Similarity=0.316  Sum_probs=147.9

Q ss_pred             CCCCEEEEeecCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEEeCCCCCCCchHHHHHH
Q 044728           21 MNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYIS-SDGEWFMDVFHVTDQNGNKLSEDDVSERI   99 (450)
Q Consensus        21 ~~~p~V~i~~~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~-t~~g~~~d~F~V~~~~g~~~~~~~~~~~i   99 (450)
                      ...|.|.+++....++++|+|+++||||||++|+++|..+|+||++|+|+ |.+|+++|+|+|.+.+|.++.+++.+++|
T Consensus       653 ~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i  732 (850)
T TIGR01693       653 SGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQEL  732 (850)
T ss_pred             CCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHH
Confidence            35789999987778999999999999999999999999999999999998 58999999999999999988776555555


Q ss_pred             H----HHhCcCccCC-----C----------Ccceee--eccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 044728          100 Q----QSLGPRARSF-----R----------SLRRSV--GVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEV  158 (450)
Q Consensus       100 ~----~~L~~~~~~~-----~----------~~~r~v--~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i  158 (450)
                      +    ++|.+.....     .          ..+.+|  +++.+..+|+|+|.|.||||||++|+++|+++|+||++|+|
T Consensus       733 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i  812 (850)
T TIGR01693       733 LQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKI  812 (850)
T ss_pred             HHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEE
Confidence            5    4554422100     0          011123  45788889999999999999999999999999999999999


Q ss_pred             EeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728          159 WTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL  197 (450)
Q Consensus       159 ~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l  197 (450)
                      .|.++++.|+|+|++ ..|.++++ ++++.|+++|.++|
T Consensus       813 ~t~~~~~~d~F~v~~-~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       813 TTFGEKAEDVFYVTD-LFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             EecCccceeEEEEEC-CCCCCCCH-HHHHHHHHHHHHHh
Confidence            999999999999999 58888876 78899999998765

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=4.6e-23  Score=230.04  Aligned_cols=181  Identities=15%  Similarity=0.166  Sum_probs=150.0

Q ss_pred             cCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728          120 QAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK  198 (450)
Q Consensus       120 ~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~  198 (450)
                      .+..+.+.|.|+++||||||++||++|+.+|+||++|+|+|. +|.+.|+|+|.+ +.|. ..+++++++|++.|.++|.
T Consensus       673 ~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~-~~~~-~~~~~~~~~i~~~l~~~l~  750 (856)
T PRK03059        673 SPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLD-PEED-VHYRDIINLVEHELAERLA  750 (856)
T ss_pred             cCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeC-CCCC-CChHHHHHHHHHHHHHHHc
Confidence            566789999999999999999999999999999999999875 899999999999 4565 4467899999999999999


Q ss_pred             ccccccccccccccccchhhhHHHHhhhccccccccccCCCCCCCCCCCEEEEEeccCCceEEEEEEecCCcChHHHHHH
Q 044728          199 GDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVC  278 (450)
Q Consensus       199 ~~~d~~~~~~~~s~~~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~  278 (450)
                      ++.+.. .+         +.+| ...  ..+            .+..++.|.+++..+.++|+|+|+++||||||++|++
T Consensus       751 ~~~~~~-~~---------~~~~-~~~--~~~------------~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~  805 (856)
T PRK03059        751 EQAPLP-EP---------SKGR-LSR--QVK------------HFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIAR  805 (856)
T ss_pred             CCCCcc-hh---------hccc-ccc--ccc------------CCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHH
Confidence            865321 00         0111 010  001            2335789999999999999999999999999999999


Q ss_pred             HHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHH
Q 044728          279 TLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAI  330 (450)
Q Consensus       279 ~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L  330 (450)
                      +|+.+|+||++|+|+|.+|+++|+|+|.+..   ..+++++++|++.|.++|
T Consensus       806 ~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~---~~~~~~~~~l~~~L~~~L  854 (856)
T PRK03059        806 VLAEHRVSVHTAKINTLGERVEDTFLIDGSG---LSDNRLQIQLETELLDAL  854 (856)
T ss_pred             HHHHCCCeEEEEEEeecCCEEEEEEEEcCCC---CCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999996433   445568999999998876

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=1.3e-22  Score=229.16  Aligned_cols=190  Identities=24%  Similarity=0.391  Sum_probs=160.6

Q ss_pred             ccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728          119 VQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT-HNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL  197 (450)
Q Consensus       119 ~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l  197 (450)
                      ..+..+.++|+|+++||||||++|+++|+.+|+||++|+|+| .+|.+.|+|+|++ ..|.++.+++++++|++.|.+++
T Consensus       726 ~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~~~L~~~l  804 (931)
T PRK05092        726 PDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLAKAIEDAL  804 (931)
T ss_pred             ecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHH
Confidence            356678999999999999999999999999999999999998 5889999999999 57887777889999999999999


Q ss_pred             hccccccccccccccccchhhhHHHHhhhccccccccccCCCCCCCCCCCEEEEEeccCCceEEEEEEecCCcChHHHHH
Q 044728          198 KGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAV  277 (450)
Q Consensus       198 ~~~~d~~~~~~~~s~~~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~  277 (450)
                      .++.+..   ..+       .+|....    ..         ...+..+|.|.++|..+.++|+|.|+++||||||++|+
T Consensus       805 ~~~~~~~---~~~-------~~r~~~~----~~---------~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~  861 (931)
T PRK05092        805 SGEVRLP---EAL-------AKRTKPK----KR---------ARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLT  861 (931)
T ss_pred             cCCCCCc---ccc-------ccccCcc----cc---------ccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHH
Confidence            8765331   111       1110000    00         01233579999999999999999999999999999999


Q ss_pred             HHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044728          278 CTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR  332 (450)
Q Consensus       278 ~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~  332 (450)
                      ++|+++|+||.+|+|.|.++++.|+|+|++.+|.++.+++.++.|+++|.++|..
T Consensus       862 ~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~  916 (931)
T PRK05092        862 RALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE  916 (931)
T ss_pred             HHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999988877889999999998853

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.82  E-value=6.2e-20  Score=143.83  Aligned_cols=72  Identities=26%  Similarity=0.387  Sum_probs=67.2

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChH-HHHHHHHHHhhcccc
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSE-TIESVRKEIGLTILR  409 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~-~~~~L~~~l~~~~l~  409 (450)
                      |+|||.++|||||||+|+++|+++|++|++|+|+|+|++|+|+|||++.+|.|+.++ ++++|+++|.+++=+
T Consensus         2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~   74 (75)
T cd04897           2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER   74 (75)
T ss_pred             EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999999999999999999999999999999864 778999999886533

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.81  E-value=9.6e-20  Score=141.73  Aligned_cols=69  Identities=22%  Similarity=0.416  Sum_probs=64.8

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCCh-HHHHHHHHHHhh
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKS-ETIESVRKEIGL  405 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~-~~~~~L~~~l~~  405 (450)
                      .|+|||.++|||||||+|+++|+++|++|++|||+|+|++++|+|||++.+|.|+++ +.+++|+++|..
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence            379999999999999999999999999999999999999999999999999999976 577899998864

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.78  E-value=7.4e-19  Score=137.73  Aligned_cols=71  Identities=18%  Similarity=0.425  Sum_probs=65.8

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEe--ecCceeeeEEEEEeCCCCCCCh-HHHHHHHHHHhhcccc
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVT--TRGSQAVNVFYVVDASGNPVKS-ETIESVRKEIGLTILR  409 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~--T~g~~a~D~F~v~~~~g~~l~~-~~~~~L~~~l~~~~l~  409 (450)
                      |+|||.+.|||||||+|+++|+++|++|++|||+  |+|++++|+||| +.+|.++++ ++++.|+++|.+++..
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~~   74 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMVC   74 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999999999999999  999999999999 888999876 5789999999987653

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.73  E-value=3.9e-17  Score=128.03  Aligned_cols=75  Identities=68%  Similarity=1.153  Sum_probs=71.4

Q ss_pred             eEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc
Q 044728          259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR  333 (450)
Q Consensus       259 ~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r  333 (450)
                      +|+|+|.|+||||||++|+++|+++|++|.+|+|.|.++++.|+|||++.+|.++.++++.++|+++|.++|.+|
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~   75 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR   75 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999999999999999999999999999999998888999999999988764

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.67  E-value=4.4e-16  Score=121.19  Aligned_cols=69  Identities=25%  Similarity=0.351  Sum_probs=65.4

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728          125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLL  194 (450)
Q Consensus       125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~  194 (450)
                      +|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+++.|+|||++ .+|.++.++++++.|+++|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence            4899999999999999999999999999999999999999999999999 68999998989899988874

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.66  E-value=1.1e-15  Score=141.44  Aligned_cols=141  Identities=11%  Similarity=0.153  Sum_probs=110.8

Q ss_pred             CCceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh----
Q 044728          256 DKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIK----  331 (450)
Q Consensus       256 ~~~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~----  331 (450)
                      ...+.+|+++|+||||++++++++|+++||||.+.+....+|++.-++.|.   +.+    ...++|+..|...-.    
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~~----~~~~~le~~L~~l~~~~~L   77 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GSW----NAITLIESTLPLKGAELDL   77 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CCh----hHHHHHHHHHHhhhhhcCe
Confidence            346789999999999999999999999999999999999999998888884   222    256778887754321    


Q ss_pred             ----ccC--------CCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCc--eeeeEEEEEeCCCCCCChHHHH
Q 044728          332 ----RRT--------SEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGS--QAVNVFYVVDASGNPVKSETIE  397 (450)
Q Consensus       332 ----~r~--------~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~--~a~D~F~v~~~~g~~l~~~~~~  397 (450)
                          ++.        +.++.++|.+.|||||+++||++|+++|+||...+..|++.  ...+.|.+.-...-|.+ ...+
T Consensus        78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~-~~~~  156 (190)
T PRK11589         78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS-QDAA  156 (190)
T ss_pred             EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC-CCHH
Confidence                121        12389999999999999999999999999999999999995  67788877666555543 2234


Q ss_pred             HHHHHHh
Q 044728          398 SVRKEIG  404 (450)
Q Consensus       398 ~L~~~l~  404 (450)
                      .|+++|.
T Consensus       157 ~L~~~l~  163 (190)
T PRK11589        157 NIEQAFK  163 (190)
T ss_pred             HHHHHHH
Confidence            4444444

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.63  E-value=2e-15  Score=118.36  Aligned_cols=72  Identities=18%  Similarity=0.217  Sum_probs=67.3

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE--eeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhhc
Q 044728          126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVW--THNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKG  199 (450)
Q Consensus       126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~--t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~~  199 (450)
                      |+++|.++||||||++|+++|+++|++|++|+|.  |.|+++.|+|+| + ..|.++.++++++.|+++|.+++..
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~~   74 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMVC   74 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhcC
Confidence            5799999999999999999999999999999999  999999999999 6 5788898999999999999988753

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.60  E-value=9.7e-15  Score=115.10  Aligned_cols=73  Identities=63%  Similarity=1.017  Sum_probs=67.8

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCC-CCCCCCHHHHHHHHHHHHHhhhc
Q 044728          126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEAT-GLPIDDPDTLAKIKRLLLYVLKG  199 (450)
Q Consensus       126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~-g~~i~~~~~~~~l~~~L~~~l~~  199 (450)
                      |+|+|.++||||||++|+++|+.+|+||++|+++|.++++.|+|+|++ .+ |.++.+++++++|++.|.++|.|
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d-~~~~~~~~~~~~~~~i~~~L~~~l~g   74 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD-EETGAPIDDPIRLASIEDRLDNVLRG   74 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc-CcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            579999999999999999999999999999999999999999999999 45 77787888999999999988864

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.59  E-value=1.2e-14  Score=114.27  Aligned_cols=71  Identities=25%  Similarity=0.405  Sum_probs=65.4

Q ss_pred             EEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHH
Q 044728          260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE-SPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAI  330 (450)
Q Consensus       260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L  330 (450)
                      ++|+|+++||||||++++++|+.+|+||++|+|.|. +|+++|+|+|++++|.++.++++++++++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            579999999999999999999999999999999998 79999999999999988877778999999997753

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.58  E-value=1.4e-14  Score=114.18  Aligned_cols=72  Identities=24%  Similarity=0.389  Sum_probs=66.7

Q ss_pred             EEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCC-CCCCCcHHHHHHHHHHHHHHHh
Q 044728          260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVD-GNPISSEAERQRVINCLEAAIK  331 (450)
Q Consensus       260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~-g~~~~~~~~~~~l~~~L~~~L~  331 (450)
                      |+|+|+++||||||++++++|+++|+||++|+|.|.+|+++|+|+|.+++ |.++.++++++++++.|.++|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            57999999999999999999999999999999999999999999999987 7777777789999999988763

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.54  E-value=6e-14  Score=111.15  Aligned_cols=70  Identities=19%  Similarity=0.365  Sum_probs=63.3

Q ss_pred             EEEEEecCCcChHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh
Q 044728          261 VVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIA-ESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIK  331 (450)
Q Consensus       261 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~  331 (450)
                      .++|+++||||||++++++|+++|+||++|+|.| .+|+++|+|+|++++|. ..+++++++++++|.++|.
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~   72 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLG   72 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHc
Confidence            5899999999999999999999999999999997 68999999999998777 4455689999999988874

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.54  E-value=5.2e-14  Score=110.57  Aligned_cols=71  Identities=27%  Similarity=0.469  Sum_probs=65.1

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728          126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL  197 (450)
Q Consensus       126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l  197 (450)
                      +.|+|+++||||||++++++|+.+|+||++|+|+|. +|++.|+|+|++ ..|.++.++++++++++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHhhC
Confidence            689999999999999999999999999999999998 699999999999 57888877889999999998764

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.52  E-value=8.8e-14  Score=110.19  Aligned_cols=68  Identities=29%  Similarity=0.479  Sum_probs=60.6

Q ss_pred             EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEee-cCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhc
Q 044728          339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTT-RGSQAVNVFYVVDASGNPVKSETIESVRKEIGLT  406 (450)
Q Consensus       339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T-~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~  406 (450)
                      ++||.+.||||||++|+++|+++|+||..|+|.| .++++.|+|||++..|...++++.++++++|.++
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~   70 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAV   70 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999996 8999999999999977744446777888888764

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.49  E-value=1.8e-13  Score=105.28  Aligned_cols=65  Identities=26%  Similarity=0.314  Sum_probs=56.4

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHh
Q 044728           37 TLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSL  103 (450)
Q Consensus        37 ~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L  103 (450)
                      .+|+|+++||||||++++++|..+|+||++|+|+| .+|+++|+|+|.+.+|.  .+..+.+.++++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~--~~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG--ETAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc--chHHHHHHHHHhh
Confidence            58999999999999999999999999999999986 78999999999999887  3344555666554

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.49  E-value=7e-13  Score=122.88  Aligned_cols=151  Identities=14%  Similarity=0.163  Sum_probs=106.6

Q ss_pred             CCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCcc---CC
Q 044728           34 RKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRAR---SF  110 (450)
Q Consensus        34 ~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~---~~  110 (450)
                      ..+.+|+|+++||||+.+.++++|+++||||.+.+++..+|++.-++.|   .+.    |.....++..|.....   +.
T Consensus         6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv---s~~----~~~~~~le~~L~~l~~~~~L~   78 (190)
T PRK11589          6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL---SGS----WNAITLIESTLPLKGAELDLL   78 (190)
T ss_pred             ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE---eCC----hhHHHHHHHHHHhhhhhcCeE
Confidence            4678999999999999999999999999999999999988887766666   222    3356677777755431   11


Q ss_pred             CCcceeee--ccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCC------eEEEEEEEeecCCCCCCCC
Q 044728          111 RSLRRSVG--VQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNS------RMASVVYITSEATGLPIDD  182 (450)
Q Consensus       111 ~~~~r~v~--~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~------~~~d~f~V~~~~~g~~i~~  182 (450)
                      ...++.-.  -......+.++|.+.||||+++.+|++|+++|+||.+-+..|.+.      .....|.+.-+ .+.    
T Consensus        79 i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP-~~~----  153 (190)
T PRK11589         79 IVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSP-ASQ----  153 (190)
T ss_pred             EEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcC-CCC----
Confidence            11111000  011222589999999999999999999999999999998888653      23444455542 222    


Q ss_pred             HHHHHHHHHHHHHhhh
Q 044728          183 PDTLAKIKRLLLYVLK  198 (450)
Q Consensus       183 ~~~~~~l~~~L~~~l~  198 (450)
                        ..+.|+++|.+...
T Consensus       154 --~~~~L~~~l~~l~~  167 (190)
T PRK11589        154 --DAANIEQAFKALCT  167 (190)
T ss_pred             --CHHHHHHHHHHHHH
Confidence              24667777765444

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.45  E-value=3.4e-13  Score=119.86  Aligned_cols=141  Identities=16%  Similarity=0.193  Sum_probs=113.9

Q ss_pred             CceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh-----
Q 044728          257 KGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIK-----  331 (450)
Q Consensus       257 ~~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~-----  331 (450)
                      .+|++|++++.||||+...+++...++||||+++|+...++.+..+..|.   |.    ++...+|+..|...=+     
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---gs----~dav~~le~~l~~l~~~~~L~   75 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---GS----WDAVTLLEATLPLLGAELDLL   75 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---eC----HHHHHHHHHHhhcccccCCeE
Confidence            46789999999999999999999999999999999999999888777776   33    3477888888854211     


Q ss_pred             ---ccC--------CCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCce--eeeEEEEEeCCCCCCChHHHHH
Q 044728          332 ---RRT--------SEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQ--AVNVFYVVDASGNPVKSETIES  398 (450)
Q Consensus       332 ---~r~--------~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~--a~D~F~v~~~~g~~l~~~~~~~  398 (450)
                         .|.        +..+.++|.+.|||||+.+||++|.++||||++....|+...  ..-.|+++-.-+.|.+ -....
T Consensus        76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~-~~i~~  154 (176)
T COG2716          76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN-LSISA  154 (176)
T ss_pred             EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc-CcHHH
Confidence               121        125899999999999999999999999999999999998643  6778999777777776 34456


Q ss_pred             HHHHHhh
Q 044728          399 VRKEIGL  405 (450)
Q Consensus       399 L~~~l~~  405 (450)
                      |+++|++
T Consensus       155 l~~~f~a  161 (176)
T COG2716         155 LRDAFEA  161 (176)
T ss_pred             HHHHHHH
Confidence            6665553

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.44  E-value=1.3e-12  Score=142.07  Aligned_cols=132  Identities=14%  Similarity=0.220  Sum_probs=108.5

Q ss_pred             EEEEEEe-cCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc-----
Q 044728          260 TVVNLRC-PDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR-----  333 (450)
Q Consensus       260 t~v~V~~-~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r-----  333 (450)
                      -.++|.. +|+||++.+++++|+.+|++|.+|++.+ +|.+...|.|....|.+.++.    .+++.+...+.+.     
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  621 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQ----EFLQAYKSGVYSELPDPA  621 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChH----HHHHHHHHhhcCCCCccc
Confidence            3678888 9999999999999999999999999999 888899999999889888665    4444444444322     


Q ss_pred             --CCC----ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhcc
Q 044728          334 --TSE----GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTI  407 (450)
Q Consensus       334 --~~~----~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~  407 (450)
                        .|+    .+++||++.||||+|+.|+++|.    +|.+|+++|.|..++|+||+..       +..+.++.+++..++
T Consensus       622 ~~~~~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~-------~~~r~~~~~~~~~~~  690 (693)
T PRK00227        622 PGITATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP-------GFDRATVERDVTRVL  690 (693)
T ss_pred             CCCCceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC-------cccHHHHHHHHHHHH
Confidence              122    47999999999999999999999    9999999999999999999971       123567777776654

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.43  E-value=1.1e-12  Score=100.90  Aligned_cols=65  Identities=18%  Similarity=0.236  Sum_probs=55.8

Q ss_pred             EEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHH
Q 044728          260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE-SPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAI  330 (450)
Q Consensus       260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L  330 (450)
                      .+|+|+++||||||++++++|+.+|+||++|+|+|. +|+++|+|+|++.+|.      ..+.|+++|.++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~------~~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG------ETAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc------chHHHHHHHHHhh
Confidence            479999999999999999999999999999999975 8999999999998775      2345666665544

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.30  E-value=2.1e-11  Score=95.53  Aligned_cols=68  Identities=31%  Similarity=0.574  Sum_probs=62.7

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCc
Q 044728           37 TLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGP  105 (450)
Q Consensus        37 ~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~  105 (450)
                      ++|+|+++||||+|++|+++|.++|+||+.|.++|.+++++|+|+|.+++|.++ +.+.+++|+++|..
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~~   69 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIGP   69 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhcc
Confidence            689999999999999999999999999999999988889999999999998877 56788999999864

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.30  E-value=2.4e-11  Score=95.21  Aligned_cols=67  Identities=22%  Similarity=0.341  Sum_probs=60.9

Q ss_pred             EEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHH
Q 044728          260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLE  327 (450)
Q Consensus       260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~  327 (450)
                      +.|+|+++||||+|++++++|+.+|+||.+|++.|.+++++|+|+|.++++.+. +++++++++++|.
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence            579999999999999999999999999999999998889999999999988877 5568888888774

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.24  E-value=3.1e-10  Score=123.77  Aligned_cols=144  Identities=13%  Similarity=0.100  Sum_probs=118.3

Q ss_pred             eEEEEEEe-CCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhhccccc
Q 044728          125 HTTIELTG-RDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKGDRDK  203 (450)
Q Consensus       125 ~t~i~v~~-~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~~~~d~  203 (450)
                      ...++|.. +|++|+|++++++|+.+|++|++|++.+ +|.+...|.|.+ ..|.+. ++   ..+++.+..++.|+.+.
T Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~-~~---~~~~~~~~~~~~~~~~~  619 (693)
T PRK00227        546 DGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDF-DP---QEFLQAYKSGVYSELPD  619 (693)
T ss_pred             CCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCC-Ch---HHHHHHHHHhhcCCCCc
Confidence            36788888 9999999999999999999999999999 889999999999 577765 45   66888888888887643


Q ss_pred             cccccccccccchhhhHHHHhhhccccccccccCCCCCCCCCCCEEEEEeccCCceEEEEEEecCCcChHHHHHHHHHhC
Q 044728          204 RSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKGYTVVNLRCPDRPKLLFDAVCTLTDM  283 (450)
Q Consensus       204 ~~~~~~~s~~~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLl~~i~~~L~~~  283 (450)
                      .                           .           ..+|.+.|..      ++++|.+.||||+++.++++|.  
T Consensus       620 ~---------------------------~-----------~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~--  653 (693)
T PRK00227        620 P---------------------------A-----------PGITATFWHG------NILEVRTEDRRGALGALLGVLP--  653 (693)
T ss_pred             c---------------------------c-----------CCCCceEeeC------cEEEEEeCccccHHHHHHHHhh--
Confidence            1                           0           1246666653      6899999999999999999999  


Q ss_pred             CceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHH
Q 044728          284 QYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAI  330 (450)
Q Consensus       284 glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L  330 (450)
                        +|..|++.|.|..++|.|++.+.        ..+.+++.++..+|
T Consensus       654 --~~~~~~~~~~g~~~~~~~~~~~~--------~~r~~~~~~~~~~~  690 (693)
T PRK00227        654 --DLLWITASTPGATMIVQAALKPG--------FDRATVERDVTRVL  690 (693)
T ss_pred             --hhhhHhhcCCCcceEEEEEecCc--------ccHHHHHHHHHHHH
Confidence              89999999999999999999821        13566777766654

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.21  E-value=1.3e-10  Score=89.93  Aligned_cols=69  Identities=45%  Similarity=0.734  Sum_probs=63.3

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhc
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLT  406 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~  406 (450)
                      |.++|.+.||||+|++|+++|+++|++|.++++.|.++.+.|+|++++.+|.+.+++..++|++.|.++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~   69 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA   69 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            578999999999999999999999999999999999889999999999999986656778899988764

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.19  E-value=1.8e-10  Score=89.09  Aligned_cols=69  Identities=26%  Similarity=0.440  Sum_probs=62.9

Q ss_pred             EEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHH
Q 044728          260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAA  329 (450)
Q Consensus       260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~  329 (450)
                      |.+.|+++|+||+|++++++|+.+|++|.++++.+.++.+.|+|++.+++|.+. +.++++++++.|.++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~-~~~~~~~i~~~l~~~   69 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPL-DPERQEALRAALGEA   69 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhh
Confidence            468999999999999999999999999999999998889999999999988884 556899999998765

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.07  E-value=9.5e-10  Score=98.06  Aligned_cols=154  Identities=15%  Similarity=0.170  Sum_probs=111.2

Q ss_pred             CCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCcc---CC
Q 044728           34 RKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRAR---SF  110 (450)
Q Consensus        34 ~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~---~~  110 (450)
                      ..+.+|+++++||||+...+++...+.||||.+.++...++.+.-+..|   .|.    |+-..+++.+|.....   +.
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~li---sgs----~dav~~le~~l~~l~~~~~L~   75 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLI---SGS----WDAVTLLEATLPLLGAELDLL   75 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEE---eeC----HHHHHHHHHHhhcccccCCeE
Confidence            4578999999999999999999999999999999999987766544333   333    6678899999866542   11


Q ss_pred             CCcceeee-c-cCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCCHHHH
Q 044728          111 RSLRRSVG-V-QAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITSEATGLPIDDPDTL  186 (450)
Q Consensus       111 ~~~~r~v~-~-~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~~~~g~~i~~~~~~  186 (450)
                      ....|.-. - ......+.+.|.+.||||++.++|.+|..+|+||++-.-.|.  .+.....|...- .-+-|.  .-..
T Consensus        76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~i-t~~lPa--~~~i  152 (176)
T COG2716          76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQI-TARLPA--NLSI  152 (176)
T ss_pred             EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhh-hccCCC--cCcH
Confidence            11111110 1 356678899999999999999999999999999998887774  344555665544 223333  1345


Q ss_pred             HHHHHHHHHhh
Q 044728          187 AKIKRLLLYVL  197 (450)
Q Consensus       187 ~~l~~~L~~~l  197 (450)
                      ..|++++++..
T Consensus       153 ~~l~~~f~al~  163 (176)
T COG2716         153 SALRDAFEALC  163 (176)
T ss_pred             HHHHHHHHHHH
Confidence            67777776543

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.88  E-value=2e-08  Score=77.22  Aligned_cols=69  Identities=36%  Similarity=0.634  Sum_probs=60.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHh
Q 044728          126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYV  196 (450)
Q Consensus       126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~  196 (450)
                      +.|.|.++|+||+|++|+++|+++|++|.++++.+.+++..+.|++.. ..+... +++++++|++.|..+
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~-~~~~~~-~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRPL-DPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhh
Confidence            368899999999999999999999999999999998778999999998 455554 567889999988764

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.87  E-value=2.4e-08  Score=76.74  Aligned_cols=69  Identities=35%  Similarity=0.688  Sum_probs=60.9

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhc
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLT  406 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~  406 (450)
                      +.+.|.+.|+||+|++|+.+|+++|++|.++++.|.+++..++|++..+++.+.++++.+.+++.|..+
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            368899999999999999999999999999999998889999999999888776556778888887653

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.73  E-value=1.2e-07  Score=79.36  Aligned_cols=114  Identities=21%  Similarity=0.238  Sum_probs=89.1

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCCccee
Q 044728           37 TLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRS  116 (450)
Q Consensus        37 ~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~~~r~  116 (450)
                      -+|+|+..|+||-|+.++..|.+.|+||..-.|.-.+.+-+-..+|.+++           .-.++|.+.. +       
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d-----------~A~~~Lee~g-F-------   64 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPD-----------EAHSVLEEAG-F-------   64 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChH-----------HHHHHHHHCC-c-------
Confidence            58999999999999999999999999999888876666655556653322           3466776654 1       


Q ss_pred             eeccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEee
Q 044728          117 VGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITS  173 (450)
Q Consensus       117 v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~  173 (450)
                          .-....++-|...|+||-|+.|+++|.++++|+.+++.++. ...+.-+|.+.+
T Consensus        65 ----~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed  118 (142)
T COG4747          65 ----TVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED  118 (142)
T ss_pred             ----EEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence                11225678899999999999999999999999999999986 455666666655

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.64  E-value=3.2e-07  Score=72.54  Aligned_cols=66  Identities=23%  Similarity=0.453  Sum_probs=55.7

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728          125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK  198 (450)
Q Consensus       125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~  198 (450)
                      ..+|++.|+||||+++.++++|+++|+||.+.+..+.++++..++.|+-+        ++..++++++|.++..
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~~   67 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELAE   67 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999872        3567888888876544

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.61  E-value=4.3e-07  Score=71.81  Aligned_cols=64  Identities=16%  Similarity=0.150  Sum_probs=53.3

Q ss_pred             eEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHH
Q 044728          259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAA  329 (450)
Q Consensus       259 ~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~  329 (450)
                      +.+|+|.|+||||++++++++|+++|+||.+.+..+.+|.+.-.+.|.-+       ++..++|+++|.+.
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999988888743       34678888888764

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.38  E-value=1.1e-05  Score=67.65  Aligned_cols=125  Identities=16%  Similarity=0.156  Sum_probs=90.9

Q ss_pred             EEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhccC-CCceE
Q 044728          261 VVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRT-SEGIS  339 (450)
Q Consensus       261 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r~-~~~t~  339 (450)
                      +|.|+..++||-|+.++..|..+|+||..-.|.-+++.-.-.+.|.++       ++..    +.|+++  +-+ ....+
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-------d~A~----~~Lee~--gF~Vr~~dV   71 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-------DEAH----SVLEEA--GFTVRETDV   71 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-------HHHH----HHHHHC--CcEEEeeeE
Confidence            688999999999999999999999999999998887766655666532       1122    233321  000 12357


Q ss_pred             EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec-CceeeeEEEEEeCCCCCCChHHHHHHHHHHhhccc
Q 044728          340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR-GSQAVNVFYVVDASGNPVKSETIESVRKEIGLTIL  408 (450)
Q Consensus       340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~-g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l  408 (450)
                      +-|...|+||-|..|+.+|.++++|+.++..-+. .+.|.-.|.+          +++++..++|.++..
T Consensus        72 laVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~----------ed~d~~~~aLed~gi  131 (142)
T COG4747          72 LAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRV----------EDIDRAIKALEDAGI  131 (142)
T ss_pred             EEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEh----------hHHHHHHHHHHHcCC
Confidence            8899999999999999999999999999887544 4556655554          234566666666444

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.35  E-value=1.9e-06  Score=63.92  Aligned_cols=67  Identities=22%  Similarity=0.370  Sum_probs=54.8

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcC
Q 044728           37 TLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPR  106 (450)
Q Consensus        37 ~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~  106 (450)
                      ++|+|.|||+.||-.++++++.+.|++|..+.++|++.|++-.|+|...... +  .-++..+++.|.+.
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~-~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPS-I--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCC-C--cccHHHHHHHHHhc
Confidence            4799999999999999999999999999999999999999999998764322 1  12455667766543

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.33  E-value=2.9e-06  Score=64.17  Aligned_cols=48  Identities=23%  Similarity=0.286  Sum_probs=39.2

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCC--eEEEEEEEEe
Q 044728           37 TLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGE--WFMDVFHVTD   84 (450)
Q Consensus        37 ~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g--~~~d~F~V~~   84 (450)
                      +.|.|.++||||+|++++++|.++|+||..+.+.+..+  +.+..+.+.+
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~   50 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD   50 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC
Confidence            57899999999999999999999999999999987443  4544444333

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.32  E-value=2.8e-06  Score=66.87  Aligned_cols=65  Identities=22%  Similarity=0.308  Sum_probs=53.1

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728          127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK  198 (450)
Q Consensus       127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~  198 (450)
                      +++|.|+||||+.++++++|+++|+||.+.+..+.++++...|.+.-+ .+.      ..+.+++.|....+
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~~------~~~~l~~~l~~l~~   65 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DSA------DSEALLKDLLFKAH   65 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CCC------CHHHHHHHHHHHHH
Confidence            378999999999999999999999999999988888888888888763 221      24667777766554

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.31  E-value=2.8e-06  Score=66.82  Aligned_cols=62  Identities=13%  Similarity=0.125  Sum_probs=50.4

Q ss_pred             EEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHH
Q 044728          261 VVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEA  328 (450)
Q Consensus       261 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  328 (450)
                      +|+|.|+||||+.++++++|+++|+||.+.+..+.++++.-.|.+.-+.+.      ..+.|+++|+.
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~------~~~~l~~~l~~   62 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSA------DSEALLKDLLF   62 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCC------CHHHHHHHHHH
Confidence            378999999999999999999999999999988888888778888755432      24566666654

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.30  E-value=3.7e-06  Score=63.61  Aligned_cols=63  Identities=24%  Similarity=0.433  Sum_probs=46.0

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      |.+.|..+||||+|++|+++|+++|+||..+.+.+.++.....|.+...+     ....+++.++|.+
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD-----EEDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE-----GHGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC-----CCCHHHHHHHHHc
Confidence            57899999999999999999999999999999998887433333332221     1344555555543

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.29  E-value=5.5e-06  Score=65.63  Aligned_cols=62  Identities=11%  Similarity=0.089  Sum_probs=48.9

Q ss_pred             EEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHH
Q 044728          260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEA  328 (450)
Q Consensus       260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  328 (450)
                      .+|++.|+||||+.+++++.|+++|+||.+.+..+.+|.+.-.+.+..+   +.    ..+.|++.|.+
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~----~~~~l~~~l~~   63 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WD----AIAKLEAALPG   63 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cc----cHHHHHHHHHH
Confidence            5789999999999999999999999999999999988877555555422   11    34566666654

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.29  E-value=4.9e-06  Score=65.90  Aligned_cols=64  Identities=25%  Similarity=0.445  Sum_probs=51.8

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728          126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL  197 (450)
Q Consensus       126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l  197 (450)
                      .+|++.|+||||+.+.|+++|+++|+||.+.+.++.++++.....+.- +    .   ...+.|++.|.+..
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~-~----~---~~~~~l~~~l~~~~   65 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG-S----W---DAIAKLEAALPGLA   65 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe-c----c---ccHHHHHHHHHHHH
Confidence            678999999999999999999999999999999998888876666665 2    1   12467777776533

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PRK07431 aspartate kinase; Provisional

Probab=98.24  E-value=0.002  Score=70.40  Aligned_cols=258  Identities=14%  Similarity=0.209  Sum_probs=148.2

Q ss_pred             cCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCCcceeeeccC
Q 044728           43 SANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQA  121 (450)
Q Consensus        43 ~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~~~r~v~~~~  121 (450)
                      .++.+|+++++...|.+.|+||.--..+. ..+..--+|.|.+.+-     ....+.+++ |.....     ...  ...
T Consensus       278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~~-l~~~~~-----~~~--i~~  344 (587)
T PRK07431        278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAEA-IAPALG-----GAE--VLV  344 (587)
T ss_pred             CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHHH-HHHHcC-----CCc--EEE
Confidence            57899999999999999999999766543 2333222466633211     111122222 211110     001  123


Q ss_pred             CCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728          122 ALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK  198 (450)
Q Consensus       122 ~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~  198 (450)
                      ..+...|.+.+.   +.||+++++..+|++.|++|....  +  ....-.|.|..          +..++..+.|++.+.
T Consensus       345 ~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s--Se~~Is~vv~~----------~d~~~av~~Lh~~f~  410 (587)
T PRK07431        345 ETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T--SEVKVSCVIDA----------EDGDKALRAVCEAFE  410 (587)
T ss_pred             eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c--CCCEEEEEEcH----------HHHHHHHHHHHHHhc
Confidence            456788888885   899999999999999999996555  2  12233344443          223455556666664


Q ss_pred             ccccccccccccccccchhhhHHHHhhhccccccccccCCCCCCCCCCCEEEEEeccCCceEEEEEE-ecCCcChHHHHH
Q 044728          199 GDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKGYTVVNLR-CPDRPKLLFDAV  277 (450)
Q Consensus       199 ~~~d~~~~~~~~s~~~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~-~~DrpGLl~~i~  277 (450)
                      -+...               ..+.+++   ...+            ..+.--+.  ...+...|++. .+++||+++++.
T Consensus       411 ~~~~~---------------~~~~~~~---~~~~------------~~~v~gIa--~~~~~~~i~l~~~~~~~g~~a~if  458 (587)
T PRK07431        411 LEDSQ---------------IEINPTA---SGQD------------EPEVRGVA--LDRNQAQLAIRNVPDRPGMAASIF  458 (587)
T ss_pred             cCCcc---------------cccCccc---cCCC------------CCcEEEEE--ccCCEEEEEECCCCCCccHHHHHH
Confidence            32210               0000110   0001            11111111  12234445443 578899999999


Q ss_pred             HHHHhCCceEEEEEEEe-cC--CeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhccC--------CCceEEEEeeC-
Q 044728          278 CTLTDMQYVVYHATVIA-ES--PEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRT--------SEGISLELCCE-  345 (450)
Q Consensus       278 ~~L~~~glnI~~A~I~t-~~--g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r~--------~~~t~iev~~~-  345 (450)
                      ..|+++|++|..-.... .+  |..--.|.+...         ...++.+.+.+ +.++.        ..-..|.+.+. 
T Consensus       459 ~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~---------~~~~~~~~l~~-l~~~~~~~~i~~~~~va~VSvVG~g  528 (587)
T PRK07431        459 GALAEANISVDMIVQSQRCRSDGTRDISFTVPKE---------DREAAQKVLRE-LAKQLPGAEVEDGPAIAKVSIVGAG  528 (587)
T ss_pred             HHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHH---------HHHHHHHHHHH-HHHhcCCceEEEeCCeEEEEEECCC
Confidence            99999999998764422 12  233334555431         22233222222 22111        23467888886 


Q ss_pred             --CCcchHHHHHHHHHHCCceEEEEE
Q 044728          346 --DRAGLLSDVTRIFRENGLSVTRAE  369 (450)
Q Consensus       346 --DrpGLL~~It~~l~~~gi~I~~Ak  369 (450)
                        .+||+++++.++|++.||+|....
T Consensus       529 m~~~~gv~~ri~~aL~~~~I~v~~i~  554 (587)
T PRK07431        529 MPGTPGVAARMFRALADAGINIEMIA  554 (587)
T ss_pred             ccCCcCHHHHHHHHHHHCCCcEEEee
Confidence              889999999999999999997765

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.05  E-value=1.7e-05  Score=58.91  Aligned_cols=67  Identities=15%  Similarity=0.218  Sum_probs=58.7

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHh
Q 044728          126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYV  196 (450)
Q Consensus       126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~  196 (450)
                      ++|+|.++|+.||=.+|++++.+.|++|..+.+.|.|..+--+|+|... . ..+  +-+|..|+++|.++
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~-~-~~~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR-P-PSI--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC-C-CCC--cccHHHHHHHHHhc
Confidence            4799999999999999999999999999999999999999999999873 2 223  35899999998764

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.03  E-value=1.2e-05  Score=63.06  Aligned_cols=65  Identities=17%  Similarity=0.256  Sum_probs=46.3

Q ss_pred             EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      +|.+.++||||++++||++|+++|+||...+..+..  ....|++.-....|-.+...++|+++|..
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~l~~~l~~   65 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDP--DSGRFFMRVEFELEGFDLSREALEAAFAP   65 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecC--CCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence            478999999999999999999999999999988742  22357775443333211235666665554

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.98  E-value=2.4e-05  Score=63.42  Aligned_cols=67  Identities=18%  Similarity=0.309  Sum_probs=52.9

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728          126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK  198 (450)
Q Consensus       126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~  198 (450)
                      .++++.|+|+||++++|+++|+++|+||.+.+..+.++++...+.+.-+  +...    ..+.|++.|..+..
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~~----~~~~L~~~l~~l~~   68 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESNL----DFAELQEELEELGK   68 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCCC----CHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999988887777777752  1011    24677777766443

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.97  E-value=2.7e-05  Score=63.17  Aligned_cols=64  Identities=9%  Similarity=0.090  Sum_probs=49.0

Q ss_pred             EEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHH
Q 044728          260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEA  328 (450)
Q Consensus       260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  328 (450)
                      ..|++.|+||||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+. ...    ..+.|++.|..
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~-~~~----~~~~L~~~l~~   65 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE-SNL----DFAELQEELEE   65 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC-CCC----CHHHHHHHHHH
Confidence            36899999999999999999999999999999988888776666666432 011    24556665554

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.89  E-value=8e-05  Score=59.06  Aligned_cols=65  Identities=22%  Similarity=0.324  Sum_probs=48.6

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC------CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728          127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN------SRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK  198 (450)
Q Consensus       127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~------~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~  198 (450)
                      ++++.|+|+||++++|+++|+++|+||.+.+..+.+      +.....+.+.-+ .+  .    ...++++.|..+..
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~--~----~~~~l~~~l~~l~~   71 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG--T----DLDALREELEELCD   71 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC--C----CHHHHHHHHHHHHH
Confidence            378999999999999999999999999999999876      445555555552 11  1    24667777765443

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.89  E-value=8.4e-05  Score=58.91  Aligned_cols=61  Identities=16%  Similarity=0.153  Sum_probs=45.8

Q ss_pred             EEEEecCCcChHHHHHHHHHhCCceEEEEEEEecC------CeEEEEEEEecCCCCCCCcHHHHHHHHHHHHH
Q 044728          262 VNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAES------PEAYQEYYIRHVDGNPISSEAERQRVINCLEA  328 (450)
Q Consensus       262 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~------g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  328 (450)
                      |+|.|+|+||+++++++.|+++|+||.+.+..+.+      +.+.-.+.+.-+.+  .    ...+|++.|..
T Consensus         2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~--~----~~~~l~~~l~~   68 (81)
T cd04869           2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG--T----DLDALREELEE   68 (81)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC--C----CHHHHHHHHHH
Confidence            78999999999999999999999999999998865      45554555554422  1    24556665554

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK00194 hypothetical protein; Validated

Probab=97.87  E-value=5.8e-05  Score=61.37  Aligned_cols=48  Identities=4%  Similarity=0.045  Sum_probs=41.8

Q ss_pred             eEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEe
Q 044728          259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIR  306 (450)
Q Consensus       259 ~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~  306 (450)
                      ...|+|.|+||||+++++++.|+++|+||.+.+-.+.++.+.-.+.+.
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~   50 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVD   50 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEE
Confidence            468999999999999999999999999999998888877766555554

>PRK00194 hypothetical protein; Validated

Probab=97.85  E-value=6.5e-05  Score=61.06  Aligned_cols=50  Identities=20%  Similarity=0.232  Sum_probs=42.8

Q ss_pred             eEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeC
Q 044728           36 ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQ   85 (450)
Q Consensus        36 ~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~   85 (450)
                      .+.|+|.|+||||+++.++++|++.|+||.+.+..+.+|.+.-.+.+.-+
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~   52 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS   52 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec
Confidence            57899999999999999999999999999999998877776655555433

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.82  E-value=0.00013  Score=57.12  Aligned_cols=35  Identities=20%  Similarity=0.436  Sum_probs=32.7

Q ss_pred             EEEEEecCCcChHHHHHHHHHhCCceEEEEEEEec
Q 044728          261 VVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE  295 (450)
Q Consensus       261 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~  295 (450)
                      +|+|.|+||||+++++++.|+++|+||.+.+..+.
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~   35 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD   35 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec
Confidence            37899999999999999999999999999999874

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.78  E-value=0.00052  Score=68.05  Aligned_cols=117  Identities=9%  Similarity=0.060  Sum_probs=67.0

Q ss_pred             eEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEE--ecC-CeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCC
Q 044728           36 ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYIS--SDG-EWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRS  112 (450)
Q Consensus        36 ~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~--t~~-g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~  112 (450)
                      ...|+|.|+||||+.+.|+++|+++|+||.+.+.+  +.. .+++ .+.+.+.....++-.++.+.++..-.+.. +   
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm-~i~~~~~~~~~~~~~~l~~~l~~l~~~l~-l---   83 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFM-RVSFHAQSAEAASVDTFRQEFQPVAEKFD-M---   83 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEE-EEEEEcCCCCCCCHHHHHHHHHHHHHHhC-C---
Confidence            46899999999999999999999999999999997  333 3443 22222211112332333333333222111 0   


Q ss_pred             cceeeeccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728          113 LRRSVGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT  160 (450)
Q Consensus       113 ~~r~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t  160 (450)
                         .+..........|-|...-+..-|..|........++..=+-+.+
T Consensus        84 ---~~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~vis  128 (289)
T PRK13010         84 ---QWAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIIS  128 (289)
T ss_pred             ---eEEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEE
Confidence               111112222334555555556667777777776666655444444

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.72  E-value=0.00023  Score=56.42  Aligned_cols=63  Identities=25%  Similarity=0.422  Sum_probs=49.5

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec--CceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR--GSQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~--g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      +.|+|.+.||||+|++|++++++.|+||..+.+.+.  ++.+.-.|.+.-.+     -+++.++.+.|..
T Consensus         7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d-----~~~L~~ii~~L~~   71 (80)
T PF13291_consen    7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD-----LEHLNQIIRKLRQ   71 (80)
T ss_dssp             EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS-----HHHHHHHHHHHCT
T ss_pred             EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC-----HHHHHHHHHHHHC
Confidence            579999999999999999999999999999999985  46677777775553     3577777777764

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.71  E-value=0.0011  Score=65.52  Aligned_cols=116  Identities=11%  Similarity=0.089  Sum_probs=70.1

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCCcce
Q 044728           38 LIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSD--GEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRR  115 (450)
Q Consensus        38 ~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~~~r  115 (450)
                      .|+|.||||||+.+.++++|++.|+||.+.+.+..  +|++.=.+.+.-+ +..++.+++.+.++.++.....+      
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~~~~l~~~l~~~~~~~~~l------   74 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLEESSLLAAFKSALAEKFEM------   74 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHHhCC------
Confidence            58999999999999999999999999999999974  4666534444333 22233343444444423222111      


Q ss_pred             eeeccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728          116 SVGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT  160 (450)
Q Consensus       116 ~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t  160 (450)
                      .+..........|-|.+.-+-.-|..|......-.+++.=+-+.+
T Consensus        75 ~i~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~vis  119 (280)
T TIGR00655        75 TWELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVIS  119 (280)
T ss_pred             EEEEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEE
Confidence            122111122334555555556677777777776666655444444

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.68  E-value=0.00033  Score=55.51  Aligned_cols=63  Identities=24%  Similarity=0.406  Sum_probs=48.8

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728          125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITSEATGLPIDDPDTLAKIKRLLL  194 (450)
Q Consensus       125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~  194 (450)
                      .+.|.|.+.||||+|++|+.++++.|+||.+..+.+.  ++.+...|.+.-.       +.+.++.+.+.|+
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~   70 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHC
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHH
Confidence            5778999999999999999999999999999999984  5677777776652       3456666666654

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.48  E-value=0.0022  Score=63.61  Aligned_cols=107  Identities=12%  Similarity=0.150  Sum_probs=64.0

Q ss_pred             eEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEE--ecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHH---Hh--
Q 044728          259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVI--AESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAA---IK--  331 (450)
Q Consensus       259 ~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~--t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~---L~--  331 (450)
                      ..+|+|.|+||||+.+.+++.|+++|+||.+.+..  +..+.+.-.+.+.+......    ..+.|+++|.+.   +.  
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~----~~~~l~~~l~~l~~~l~l~   84 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAA----SVDTFRQEFQPVAEKFDMQ   84 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCC----CHHHHHHHHHHHHHHhCCe
Confidence            45799999999999999999999999999999887  33343332323332211112    245566666543   21  


Q ss_pred             ---ccCCCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEE
Q 044728          332 ---RRTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAE  369 (450)
Q Consensus       332 ---~r~~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~Ak  369 (450)
                         +...+...|-|-+--+..-|.+|-.....-.++.+-+-
T Consensus        85 ~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~  125 (289)
T PRK13010         85 WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVG  125 (289)
T ss_pred             EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEE
Confidence               11122334444444445556667666666665544433

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.41  E-value=0.0014  Score=50.85  Aligned_cols=61  Identities=25%  Similarity=0.327  Sum_probs=46.8

Q ss_pred             EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      |.|.+.||||+|++|+.++++.|+||......+.. ..+.-.|.+.-.+     .++++++.+.|..
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~-----~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPS-----EEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCC-----HHHHHHHHHHHhc
Confidence            78999999999999999999999999998887653 5566666664443     2456666666654

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.41  E-value=0.0015  Score=50.62  Aligned_cols=61  Identities=11%  Similarity=0.209  Sum_probs=47.5

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728          128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLY  195 (450)
Q Consensus       128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (450)
                      |.|.+.|+||+|++|+.++++.|+||.+....+. .+.+...|.+.-.       +.++++++.+.|++
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHhc
Confidence            6789999999999999999999999999888765 4566666666541       34666777777653

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.39  E-value=0.00024  Score=57.22  Aligned_cols=68  Identities=18%  Similarity=0.239  Sum_probs=52.0

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728          125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK  198 (450)
Q Consensus       125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~  198 (450)
                      ..+|+|.|.||||+.+.++++|+++|+||++..-+-..|.....+.|.-+  ..    ......+++.|....+
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~~----~~d~~~lr~~l~~~~~   70 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--KE----VVDFAALRDELAAEGK   70 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--hH----hccHHHHHHHHHHHHH
Confidence            56899999999999999999999999999998776667888888877662  11    1223566666665444

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.39  E-value=0.005  Score=61.07  Aligned_cols=116  Identities=8%  Similarity=0.005  Sum_probs=67.2

Q ss_pred             eEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCCc
Q 044728           36 ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS--DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSL  113 (450)
Q Consensus        36 ~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~~  113 (450)
                      .+.|+|.|+||||+.+.++++|+++|+||.+.+.++  .++++.-.+.+..+.+.  +...+.+.++..-.+.. +    
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~--~~~~L~~~L~~l~~~l~-l----   79 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL--DEDALRAGFAPIAARFG-M----   79 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC--CHHHHHHHHHHHHHHhC-c----
Confidence            468999999999999999999999999999999985  34555444555444442  22323333333222111 0    


Q ss_pred             ceeeeccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728          114 RRSVGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT  160 (450)
Q Consensus       114 ~r~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t  160 (450)
                      ...+.+  ......|.|.+.-+-.-|..|........++..=+-+.+
T Consensus        80 ~i~i~~--~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis  124 (286)
T PRK13011         80 QWELHD--PAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS  124 (286)
T ss_pred             EEEEee--cccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence            011111  111223444444455566666666666665554444444

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.37  E-value=0.0053  Score=60.94  Aligned_cols=104  Identities=18%  Similarity=0.225  Sum_probs=64.1

Q ss_pred             ceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc---
Q 044728          258 GYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIA--ESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR---  332 (450)
Q Consensus       258 ~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~---  332 (450)
                      ....|+|.|+||||+.++++++|+++|+||.+.+..+  .+|.+.-.+.+.- +..+.    ..+.|+++|.+.-..   
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~~----~~~~L~~~L~~l~~~l~l   79 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLIF----NLETLRADFAALAEEFEM   79 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCCC----CHHHHHHHHHHHHHHhCC
Confidence            4568999999999999999999999999999999998  6775444444432 11111    256677666543211   


Q ss_pred             -----cCCCceEEEEeeCCCcchHHHHHHHHHHCCceEE
Q 044728          333 -----RTSEGISLELCCEDRAGLLSDVTRIFRENGLSVT  366 (450)
Q Consensus       333 -----r~~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~  366 (450)
                           ...+...|-|-+--+---|..|-.....-.++.+
T Consensus        80 ~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~  118 (286)
T PRK06027         80 DWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVE  118 (286)
T ss_pred             EEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcE
Confidence                 1122233333333334455555555555444433

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.29  E-value=0.0076  Score=59.81  Aligned_cols=48  Identities=10%  Similarity=0.090  Sum_probs=40.7

Q ss_pred             CeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEE
Q 044728           35 KATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS--DGEWFMDVFHV   82 (450)
Q Consensus        35 ~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V   82 (450)
                      ..+.|+|.|+||||+.+.++++|+++|+||.+.+.++  .+|.+.=.+.+
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v   54 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEF   54 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEE
Confidence            3578999999999999999999999999999999998  66754433443

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.28  E-value=0.0085  Score=59.25  Aligned_cols=105  Identities=11%  Similarity=0.183  Sum_probs=67.9

Q ss_pred             EEEEEecCCcChHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc-----
Q 044728          261 VVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE--SPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR-----  333 (450)
Q Consensus       261 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r-----  333 (450)
                      .|+|.|+||||+.+.+++.|+++|+||.+.+.+..  +|++.=.+.+.-+ +...    ..+.|+++|.+++..+     
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~----~~~~l~~~l~~~~~~~~~l~i   76 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRL----EESSLLAAFKSALAEKFEMTW   76 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCC----CHHHHHHHHHHHHHHHhCCEE
Confidence            58999999999999999999999999999998874  4666545555533 2112    2445666555522111     


Q ss_pred             ----CCCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEE
Q 044728          334 ----TSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEV  370 (450)
Q Consensus       334 ----~~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI  370 (450)
                          ..+...|-|-+--+---|.+|-.....-.++.+-+-+
T Consensus        77 ~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~v  117 (280)
T TIGR00655        77 ELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALV  117 (280)
T ss_pred             EEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEE
Confidence                1223344444444555677777777776665544433

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.24  E-value=0.0089  Score=59.30  Aligned_cols=106  Identities=12%  Similarity=0.156  Sum_probs=68.0

Q ss_pred             eEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc----
Q 044728          259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE--SPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR----  332 (450)
Q Consensus       259 ~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~----  332 (450)
                      ...|+|.|+||||+.+++++.|+++|+||.+.+..+.  ++.+.-.+.+..+.+.      ..+.|+++|.+.-..    
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~l~~~l~l~   80 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAPIAARFGMQ   80 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHHHHHHhCcE
Confidence            3579999999999999999999999999999998754  4555545555434332      245566666543211    


Q ss_pred             ---c-CCCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEE
Q 044728          333 ---R-TSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEV  370 (450)
Q Consensus       333 ---r-~~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI  370 (450)
                         + ..+...|-|-+--+---|.+|...+..-.++.+-+-+
T Consensus        81 i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~v  122 (286)
T PRK13011         81 WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGV  122 (286)
T ss_pred             EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEE
Confidence               1 1122344444444555677777777776665554444

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.17  E-value=0.0034  Score=47.83  Aligned_cols=46  Identities=20%  Similarity=0.392  Sum_probs=38.4

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEe
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVD  385 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~  385 (450)
                      ..+.|...|+||.|++|++.|+++|+||.+..+.+.++.  -+|.+..
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~   47 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV   47 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence            367889999999999999999999999999998776653  5566544

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.09  E-value=0.0046  Score=46.96  Aligned_cols=62  Identities=16%  Similarity=0.197  Sum_probs=42.7

Q ss_pred             EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-----ceeeeEEEEEeCCCCCCChHHHHHHHHHHhhc
Q 044728          340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-----SQAVNVFYVVDASGNPVKSETIESVRKEIGLT  406 (450)
Q Consensus       340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-----~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~  406 (450)
                      +.|..+|+||+|++|+++|+++|+||.+.......     +.+.-.|.+...     +.++.+.+.+.|.+.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~l~~~   67 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-----GAEHIEEIIAALREA   67 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHHc
Confidence            46788999999999999999999999988765432     223323333222     124566777777653

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.05  E-value=0.0007  Score=54.55  Aligned_cols=68  Identities=12%  Similarity=0.130  Sum_probs=47.5

Q ss_pred             eEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhC
Q 044728           36 ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLG  104 (450)
Q Consensus        36 ~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~  104 (450)
                      ..+|+|.++||||+.+.++++|+++|.||.+...+--+|++.=.+.|.-+. ...+-..+..+++....
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~-~~~d~~~lr~~l~~~~~   70 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISK-EVVDFAALRDELAAEGK   70 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCCh-HhccHHHHHHHHHHHHH
Confidence            368999999999999999999999999999888877777665444443321 11222334444554443

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.05  E-value=0.0037  Score=48.78  Aligned_cols=59  Identities=22%  Similarity=0.422  Sum_probs=43.3

Q ss_pred             EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      .|+|.+.||+|+|++|+.++++.|+||.+..+.+. +.  -.|.+.-.     +-+++..|.++|..
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v~-----~~~~L~~li~~L~~   60 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPTI-----EFEKLQTLMPEIRR   60 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEec-----CHHHHHHHHHHHhC
Confidence            47899999999999999999999999999998775 22  22222222     12466677776664

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.04  E-value=0.0058  Score=46.37  Aligned_cols=61  Identities=16%  Similarity=0.275  Sum_probs=42.3

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728          128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-----NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLY  195 (450)
Q Consensus       128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-----~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (450)
                      +.|..+|+||+|++|+.+++++|+||.+......     .+.....|.+...       +.+.++.+.+.|.+
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-------GAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            3578899999999999999999999998876643     2334444444431       33455666666543

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.03  E-value=0.0051  Score=48.50  Aligned_cols=63  Identities=11%  Similarity=0.242  Sum_probs=45.9

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEE-eCCCCCCChHHHHHHHHHHhh
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVV-DASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~-~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      +.|.+...|+||+|++|+.+|++.|+||++..+.-..+...-.+-++ ..+     +...++|.+.|.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~-----~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCT-----ENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECC-----HHHHHHHHHHHhC
Confidence            57899999999999999999999999999998763333322223232 322     3466778777776

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.01  E-value=0.0046  Score=47.28  Aligned_cols=62  Identities=18%  Similarity=0.266  Sum_probs=45.7

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEEEeCCCCCCChHHHHHHHHHHhhc
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG--SQAVNVFYVVDASGNPVKSETIESVRKEIGLT  406 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g--~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~  406 (450)
                      +.+.+..+|+||.|++|++.|+++|+||.+.......  ....-.|.++..       .+.+++.+.|.++
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~~~~~~L~~~   65 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ-------EDRERAKEILKEA   65 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH-------HHHHHHHHHHHHc
Confidence            4678899999999999999999999999988766652  234445555422       2456777777664

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.99  E-value=0.0025  Score=46.69  Aligned_cols=46  Identities=15%  Similarity=0.230  Sum_probs=39.2

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEee
Q 044728          128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-SRMASVVYITS  173 (450)
Q Consensus       128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~f~V~~  173 (450)
                      +.+...|+||.|++++.+|.++|+||.+..+...+ +.....|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            45788999999999999999999999999988765 66777777665

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.98  E-value=0.0043  Score=48.41  Aligned_cols=58  Identities=21%  Similarity=0.317  Sum_probs=42.7

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728          127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLL  194 (450)
Q Consensus       127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~  194 (450)
                      .|.|.+.||+|+|++|+.++++.|+||.+..+.+. +.  ..|.+.-       .+.+.+..+.+.|+
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v-------~~~~~L~~li~~L~   59 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPT-------IEFEKLQTLMPEIR   59 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEe-------cCHHHHHHHHHHHh
Confidence            47899999999999999999999999999999775 33  2222222       13456666666654

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.97  E-value=0.011  Score=48.67  Aligned_cols=83  Identities=7%  Similarity=0.127  Sum_probs=54.6

Q ss_pred             EEEEEecCCcChHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhccCCCceE
Q 044728          261 VVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE-SPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGIS  339 (450)
Q Consensus       261 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r~~~~t~  339 (450)
                      .|.++..|+||+++++++.|++.|+||.+-.+.-+ .....-...+..  +    + ...+++.+.|.+..       .+
T Consensus        10 tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~----~-~~i~Qi~kQL~KLi-------dV   75 (96)
T PRK08178         10 ILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D----D-QRLEQMISQIEKLE-------DV   75 (96)
T ss_pred             EEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C----c-hHHHHHHHHHhCCc-------CE
Confidence            48999999999999999999999999999988654 332222222332  1    1 36777777776642       25


Q ss_pred             EEEeeCCCcchHHH-HHHH
Q 044728          340 LELCCEDRAGLLSD-VTRI  357 (450)
Q Consensus       340 iev~~~DrpGLL~~-It~~  357 (450)
                      ++|.-.+...+++. +...
T Consensus        76 ikV~~l~~~~~v~~e~~~~   94 (96)
T PRK08178         76 LKVRRNQSDPTMFNKIAVF   94 (96)
T ss_pred             EEEEECCCchhHHHHHHHH
Confidence            66655544444443 4433

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.97  E-value=0.0024  Score=46.85  Aligned_cols=46  Identities=22%  Similarity=0.416  Sum_probs=39.0

Q ss_pred             EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEe
Q 044728          340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVD  385 (450)
Q Consensus       340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~  385 (450)
                      +++...|+||.|.+|+..|.++|+||.+..+.+.+ +++.-.|-+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            46788999999999999999999999999987665 66777776644

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.95  E-value=0.0031  Score=60.67  Aligned_cols=43  Identities=14%  Similarity=0.187  Sum_probs=38.0

Q ss_pred             CeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEE
Q 044728           35 KATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSD--GEWFM   77 (450)
Q Consensus        35 ~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~g~~~   77 (450)
                      ....++|.|||++|+.+.|++.|++.||||.++..+++  .|+++
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FF   50 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFF   50 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEE
Confidence            45799999999999999999999999999999999972  46554

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.95  E-value=0.0088  Score=45.22  Aligned_cols=61  Identities=18%  Similarity=0.396  Sum_probs=44.7

Q ss_pred             EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec-Cc-eeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR-GS-QAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~-g~-~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      .+.+.+.|+||+|.+|+++|+++|++|.+....+. ++ .+.-.|.+ +..    + .+.+++.+.|..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~----~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVV-EGD----D-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEE-ECC----H-HHHHHHHHHHhC
Confidence            57889999999999999999999999999998775 33 33333433 221    2 456666676664

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.93  E-value=0.0038  Score=57.19  Aligned_cols=64  Identities=20%  Similarity=0.379  Sum_probs=45.9

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      ..+.|.+.|+||+|++|+.+|+++|+||++..+.+........+.+.-+.+    +...++|+++|.+
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~----~~~ieqL~kQL~K   66 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGD----DRTIEQLTKQLYK   66 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECC----HHHHHHHHHHHHH
Confidence            478999999999999999999999999999998653333333444443321    2235666666664

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.92  E-value=0.0038  Score=47.50  Aligned_cols=46  Identities=15%  Similarity=0.270  Sum_probs=38.4

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728          126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS  173 (450)
Q Consensus       126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~  173 (450)
                      ..++|..+|+||.|++++.+|+++|+||.+..+...++.  .++.+..
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~   47 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV   47 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence            467889999999999999999999999999998776553  5555543

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.90  E-value=0.0058  Score=50.17  Aligned_cols=64  Identities=16%  Similarity=0.275  Sum_probs=49.5

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      ..+|.+...|+||+|++|+..|++.|+||++..+.-.+....-.+.+.-.+     +..++++.+.|.+
T Consensus         8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~-----~~~i~Qi~kQL~K   71 (96)
T PRK08178          8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND-----DQRLEQMISQIEK   71 (96)
T ss_pred             CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC-----chHHHHHHHHHhC
Confidence            478999999999999999999999999999998875554443344443321     3567888888876

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.87  E-value=0.0076  Score=46.76  Aligned_cols=62  Identities=21%  Similarity=0.321  Sum_probs=46.6

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCCHH-HHHHHHHHHHH
Q 044728          127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITSEATGLPIDDPD-TLAKIKRLLLY  195 (450)
Q Consensus       127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~~~~g~~i~~~~-~~~~l~~~L~~  195 (450)
                      .+.+.+.|+||++++|+++|+++|+||......+. ++.+.-.|.+...       +.+ .++++.+.|++
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHhc
Confidence            57899999999999999999999999999877553 3556666666541       223 56667666653

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.85  E-value=0.0095  Score=46.21  Aligned_cols=63  Identities=19%  Similarity=0.170  Sum_probs=46.3

Q ss_pred             EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      .+.+.+.||||+|++|++.++++|+||......+.. +.+.=.|.+...+-    +.+++++.++|.+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~----~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM----NGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch----HHHHHHHHHHHhc
Confidence            578999999999999999999999999998875533 44555566643320    1256677777664

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.80  E-value=0.0093  Score=45.98  Aligned_cols=63  Identities=24%  Similarity=0.363  Sum_probs=44.2

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG--SQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g--~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      +.|.+.+.|+||+|.+|+++|+++|++|+.....+..  +.+.=.| ++..    .+..+.+++.+.|.+
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i-~~~~----~~~~~l~~~i~~L~~   65 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVI-VTHE----TSEAALNAALAEIEA   65 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEE-EEcc----CCHHHHHHHHHHHHc
Confidence            4688999999999999999999999999999876543  3333233 3222    123455666666654

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.78  E-value=0.0071  Score=48.45  Aligned_cols=65  Identities=14%  Similarity=0.159  Sum_probs=47.9

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      .+|.+...|+||+|++|+..|++.|+||.+..+........-.+-+.-..|   ++...+++.+.|.+
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~---d~~~ieqI~kQL~K   67 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ---DDTSLHILIKKLKQ   67 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC---CHHHHHHHHHHHhC
Confidence            368899999999999999999999999999998755444444443433211   13466788887776

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.75  E-value=0.0098  Score=54.51  Aligned_cols=65  Identities=14%  Similarity=0.243  Sum_probs=48.1

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728          126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK  198 (450)
Q Consensus       126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~  198 (450)
                      ..+.+.+.|+||+|++|+++|+.+|+||.+-.+...  .+...-++.+..        ++...+.|.+.|.+...
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--------~~~~ieqL~kQL~KLid   69 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--------DDRTIEQLTKQLYKLVN   69 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--------CHHHHHHHHHHHHHHhH
Confidence            578999999999999999999999999999998652  333333333332        22336788888877654

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.75  E-value=0.0091  Score=47.09  Aligned_cols=64  Identities=9%  Similarity=0.127  Sum_probs=46.0

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-eCCeEEE-EEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728          126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT-HNSRMAS-VVYITSEATGLPIDDPDTLAKIKRLLLYVL  197 (450)
Q Consensus       126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~~~~~d-~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l  197 (450)
                      ..+.+...|+||.|++|+++|+..|.||.+-.+.- .+....- ++.+..        ++...++|.+.|.+..
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~--------~~~~i~qi~kQL~KLi   68 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC--------TENEATLLVSQLKKLI   68 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC--------CHHHHHHHHHHHhCCc
Confidence            57899999999999999999999999999888763 3333333 333222        2456677777776543

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.74  E-value=0.015  Score=44.42  Aligned_cols=47  Identities=17%  Similarity=0.241  Sum_probs=37.0

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-C-eEEEEEEEe
Q 044728          126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-S-RMASVVYIT  172 (450)
Q Consensus       126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~-~~~d~f~V~  172 (450)
                      +.+.+..+|+||.|+++++.|+++|+||.+....... + .....|.+.
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            4678899999999999999999999999988877652 2 333344444

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.72  E-value=0.009  Score=57.59  Aligned_cols=66  Identities=12%  Similarity=0.343  Sum_probs=47.1

Q ss_pred             ceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHH
Q 044728          258 GYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE--SPEAYQEYYIRHVDGNPISSEAERQRVINCLEA  328 (450)
Q Consensus       258 ~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  328 (450)
                      ...++++.|||+||+.+.|++.|+.+|+||.++.-++.  .|+++-...... ++.+.    ..+.|++.+..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~-~~~~~----~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG-EGGPL----DREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec-CCCcc----cHHHHHHHHHH
Confidence            45689999999999999999999999999999998863  455443333332 23332    34566666655

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.70  E-value=0.0073  Score=45.45  Aligned_cols=44  Identities=25%  Similarity=0.402  Sum_probs=37.3

Q ss_pred             EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEE
Q 044728          340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG--SQAVNVFYV  383 (450)
Q Consensus       340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g--~~a~D~F~v  383 (450)
                      +.+.+.|+||+|++|+++|+++|+||.+..+...+  +...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67899999999999999999999999999987764  455555655

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.68  E-value=0.012  Score=53.18  Aligned_cols=64  Identities=20%  Similarity=0.394  Sum_probs=47.6

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      .++.|...|+||.|++|+..|+++|+||++..+...++...-.+.+.-. |   ++...++|.++|.+
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~-~---d~~~i~qi~kQl~K   65 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV-G---DDKVLEQITKQLNK   65 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE-C---CHHHHHHHHHHHhc
Confidence            4789999999999999999999999999999877655333322322221 2   24567888888886

acetohydroxyacid synthase is a synonym.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.62  E-value=0.018  Score=45.61  Aligned_cols=66  Identities=21%  Similarity=0.369  Sum_probs=47.0

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCc-eeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGS-QAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~-~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      +.+.+...|+||.|++|...|+++|+||.+......+. ...-.|||... |. ..+.....+-+.|..
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~-~~-~~~~~~~~~l~~l~~   68 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE-GH-IEDPNVAEALEELKR   68 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE-CC-CCCHHHHHHHHHHHH
Confidence            45778889999999999999999999999998776643 45568888544 33 223344444444443

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.59  E-value=0.016  Score=52.32  Aligned_cols=65  Identities=17%  Similarity=0.259  Sum_probs=49.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728          126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN--SRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK  198 (450)
Q Consensus       126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~--~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~  198 (450)
                      ..+++...|+||.|++|+++|+.+|+||.+..+....  +...-++.|..        ++...+++.+.|.+...
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kli~   68 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKLVD   68 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcCcc
Confidence            4688999999999999999999999999998887653  33444455433        24567788888876553

acetohydroxyacid synthase is a synonym.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.57  E-value=0.015  Score=44.71  Aligned_cols=61  Identities=15%  Similarity=0.227  Sum_probs=42.9

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728          127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN--SRMASVVYITSEATGLPIDDPDTLAKIKRLLL  194 (450)
Q Consensus       127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~--~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~  194 (450)
                      .+.+.+.|+||++++++.+|+++|+||.+....+..  +.+.-.+.+..      . +.+.++.+.+.|.
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~------~-~~~~l~~~i~~L~   64 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE------T-SEAALNAALAEIE   64 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc------C-CHHHHHHHHHHHH
Confidence            478889999999999999999999999998876542  33443443333      1 3445555555554

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.56  E-value=0.013  Score=47.01  Aligned_cols=65  Identities=14%  Similarity=0.143  Sum_probs=47.6

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCe-EEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728          126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSR-MASVVYITSEATGLPIDDPDTLAKIKRLLLYVL  197 (450)
Q Consensus       126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~-~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l  197 (450)
                      ..+.+...|+||.|++|+++|+..|+||.+-.+... ... ..-++.+..   |    ++..++++.+.|.+..
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~---~----d~~~ieqI~kQL~Kli   69 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI---Q----DDTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC---C----CHHHHHHHHHHHhCCc
Confidence            468899999999999999999999999999988654 322 333343331   1    3456677887777644

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.53  E-value=0.022  Score=42.94  Aligned_cols=60  Identities=18%  Similarity=0.313  Sum_probs=43.4

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-C-CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728          127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-N-SRMASVVYITSEATGLPIDDPDTLAKIKRLLL  194 (450)
Q Consensus       127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~-~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~  194 (450)
                      .+.+.+.|+||+|++|+.+|+++|++|.+....+. + +.+.-.|.+..       .+ ..++.+.+.|.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~l~~~l~   63 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-------DD-DVIEQIVKQLN   63 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-------CH-HHHHHHHHHHh
Confidence            47788999999999999999999999999988765 3 34444444443       12 44555665554

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.47  E-value=0.022  Score=51.57  Aligned_cols=65  Identities=18%  Similarity=0.270  Sum_probs=49.4

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728          126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN--SRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK  198 (450)
Q Consensus       126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~--~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~  198 (450)
                      ..+++...|+||.|++|+++|+.+|+||.+..+....  +...-++.|..        ++...+++...|.++..
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLid   69 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLID   69 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcccc
Confidence            5789999999999999999999999999998876543  34444555543        34567788888876553

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.46  E-value=0.022  Score=51.59  Aligned_cols=62  Identities=19%  Similarity=0.354  Sum_probs=46.6

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCce--eeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQ--AVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~--a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      ..+.|...|+||.|++|+..|+++|+||.+..+....+.  ..-+|.+ +.+     +..++++.++|.+
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V-~~~-----~~~i~qi~kQl~K   66 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVT-SGD-----EQVIEQITKQLNK   66 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEE-ECC-----HHHHHHHHHHHhc
Confidence            478999999999999999999999999999987654433  2233333 222     4567888888776

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.41  E-value=0.016  Score=43.26  Aligned_cols=36  Identities=19%  Similarity=0.340  Sum_probs=31.2

Q ss_pred             EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC
Q 044728          339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG  374 (450)
Q Consensus       339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g  374 (450)
                      ++.+..+|+||-|++++.+|+++|+||.+.......
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            367889999999999999999999999988765443

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.39  E-value=0.024  Score=44.78  Aligned_cols=61  Identities=20%  Similarity=0.267  Sum_probs=45.9

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec--CceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR--GSQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~--g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      +.+.+...|+||.|++|+..|+..|.||++..+.-.  ++...-++-+ . .     +..+++|.+.|.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~-~-----~~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A-S-----ERPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C-C-----CchHHHHHHHHhc
Confidence            578999999999999999999999999999998753  3334444444 2 2     3446677777765

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.31  E-value=0.022  Score=42.91  Aligned_cols=33  Identities=18%  Similarity=0.429  Sum_probs=30.4

Q ss_pred             EEEeeCCCcchHHHHHHHHHHCCceEEEEEEee
Q 044728          340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTT  372 (450)
Q Consensus       340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T  372 (450)
                      +.+.+.|+||.|.+|++.|+++|++|.+.....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            678999999999999999999999999988765

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.26  E-value=0.015  Score=43.78  Aligned_cols=46  Identities=20%  Similarity=0.305  Sum_probs=38.7

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEee
Q 044728          128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN--SRMASVVYITS  173 (450)
Q Consensus       128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~--~~~~d~f~V~~  173 (450)
                      +.+.+.|+||++++|+.+|+++|+||.+......+  +...-.|.+.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~   49 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS   49 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC
Confidence            67889999999999999999999999999987754  56666666633

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.19  E-value=0.035  Score=41.95  Aligned_cols=47  Identities=13%  Similarity=0.352  Sum_probs=37.1

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEee
Q 044728          127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-SRMASVVYITS  173 (450)
Q Consensus       127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~f~V~~  173 (450)
                      .+.+.++|+||.|++++..|+++|+||.+....+.+ +...-.|.+.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~   49 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEG   49 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEec
Confidence            578899999999999999999999999988877653 44444444443

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.16  E-value=0.044  Score=40.14  Aligned_cols=61  Identities=18%  Similarity=0.293  Sum_probs=43.7

Q ss_pred             EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      |.+.+.|+||++.+|+..|.+++++|....+...+ +.+.-.|.+....     ..+...+.+.|..
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~   62 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD-----LEHLARIMRKLRQ   62 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC-----HHHHHHHHHHHhC
Confidence            46789999999999999999999999999988766 3333344443332     2355666666653

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.15  E-value=0.032  Score=44.03  Aligned_cols=63  Identities=14%  Similarity=0.217  Sum_probs=46.5

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728          126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL  197 (450)
Q Consensus       126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l  197 (450)
                      ..+.+...|+||.|++++++|+..|.||.+-.+...  ++...-++.|.+   +      ...+.|.+.|.++.
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~---~------~~i~ql~kQL~KL~   68 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS---E------RPIDLLSSQLNKLV   68 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC---C------chHHHHHHHHhcCc
Confidence            578999999999999999999999999999988753  333444454432   2      34566777776543

>PRK08577 hypothetical protein; Provisional

Probab=96.03  E-value=0.073  Score=46.74  Aligned_cols=77  Identities=17%  Similarity=0.164  Sum_probs=53.1

Q ss_pred             CEEEEeecCCC--CeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-c-CCeEEEEEEEEeCCCCCCCchHHHHHH
Q 044728           24 PRVTVDNTSNR--KATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-D-GEWFMDVFHVTDQNGNKLSEDDVSERI   99 (450)
Q Consensus        24 p~V~i~~~~~~--~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~-~g~~~d~F~V~~~~g~~~~~~~~~~~i   99 (450)
                      -.|.+.+....  ..+.+.|.+.|+||+|++++++|.+.|+||.+....+ . ++.+.-.|.+.-++.     +..++.+
T Consensus        42 ~~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~-----~~~l~~l  116 (136)
T PRK08577         42 KEIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS-----DIDLEEL  116 (136)
T ss_pred             CEEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc-----hhhHHHH
Confidence            35666655444  4789999999999999999999999999999988876 3 455544455543332     1133455


Q ss_pred             HHHhCc
Q 044728          100 QQSLGP  105 (450)
Q Consensus       100 ~~~L~~  105 (450)
                      .+.|..
T Consensus       117 ~~~L~~  122 (136)
T PRK08577        117 EEELKK  122 (136)
T ss_pred             HHHHHc
Confidence            555543

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.01  E-value=0.024  Score=43.36  Aligned_cols=44  Identities=30%  Similarity=0.492  Sum_probs=35.3

Q ss_pred             EEEeeCCCcchHHHHHHHHHHCCceEEEEEEee--cCceeeeEEEE
Q 044728          340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTT--RGSQAVNVFYV  383 (450)
Q Consensus       340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T--~g~~a~D~F~v  383 (450)
                      +-+...|+||.+++|++.|+++|+||.+.....  .++.+.-+|.+
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v   47 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV   47 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence            446889999999999999999999999888654  34556555555

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK08577 hypothetical protein; Provisional

Probab=95.99  E-value=0.056  Score=47.47  Aligned_cols=65  Identities=25%  Similarity=0.366  Sum_probs=46.2

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG--SQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g--~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      .+.+.|.+.|+||+|++|+++|+++|++|.+....+..  +.+.-.|.+.-.+.    +.++.++.+.|..
T Consensus        56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~----~~~l~~l~~~L~~  122 (136)
T PRK08577         56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS----DIDLEELEEELKK  122 (136)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc----hhhHHHHHHHHHc
Confidence            57899999999999999999999999999999877654  33333333322221    1345666666654

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.89  E-value=0.0094  Score=45.30  Aligned_cols=44  Identities=18%  Similarity=0.341  Sum_probs=34.9

Q ss_pred             EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEE
Q 044728          340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYV  383 (450)
Q Consensus       340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v  383 (450)
                      +-+.+.|+||+|.+|+.+|++.|+||.+....+.++.+.-.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence            45689999999999999999999999888766555555544544

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=95.89  E-value=0.066  Score=40.42  Aligned_cols=35  Identities=29%  Similarity=0.502  Sum_probs=31.8

Q ss_pred             EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec
Q 044728          339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR  373 (450)
Q Consensus       339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~  373 (450)
                      .+.+...|+||.|++|++.|++++++|.+....+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~   36 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE   36 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence            47789999999999999999999999998887665

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=95.87  E-value=3.6  Score=45.05  Aligned_cols=191  Identities=12%  Similarity=0.127  Sum_probs=114.5

Q ss_pred             CCeEEEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCcc--
Q 044728           34 RKATLIKVDSA---NKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRAR--  108 (450)
Q Consensus        34 ~~~~~V~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~--  108 (450)
                      .+...|+|.+.   +.+|+++++..+|.+.|++|.-..  + .+..+ +|.|...+     .++..+.|++.+.....  
T Consensus       346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-Se~~I-s~vv~~~d-----~~~av~~Lh~~f~~~~~~~  416 (587)
T PRK07431        346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-SEVKV-SCVIDAED-----GDKALRAVCEAFELEDSQI  416 (587)
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-CCCEE-EEEEcHHH-----HHHHHHHHHHHhccCCccc
Confidence            46678888874   899999999999999999996444  3 23332 25553322     13466777777743221  


Q ss_pred             -CCCC----cceeee-ccCCCceEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEEe-eC--CeEEEEEEEeecCCCC
Q 044728          109 -SFRS----LRRSVG-VQAALEHTTIELT-GRDRPGLLSEVFAVLSDLKCNVMGAEVWT-HN--SRMASVVYITSEATGL  178 (450)
Q Consensus       109 -~~~~----~~r~v~-~~~~~~~t~i~v~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~--~~~~d~f~V~~~~~g~  178 (450)
                       ..|.    ....|. .....+...|++. .++.+|+++++.+.|+++|++|..-.... .+  +...-.|.+..     
T Consensus       417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~-----  491 (587)
T PRK07431        417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK-----  491 (587)
T ss_pred             ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence             1111    000121 2345556666665 46889999999999999999998775432 12  23333455443     


Q ss_pred             CCCCHHHHHHHHHHHHHhhhccccccccccccccccchhhhHHHHhhhccccccccccCCCCCCCCCCCEEEEEeccCCc
Q 044728          179 PIDDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKG  258 (450)
Q Consensus       179 ~i~~~~~~~~l~~~L~~~l~~~~d~~~~~~~~s~~~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~  258 (450)
                           ..+.+....+.+ +..+.+                                           ...+.+.    .+
T Consensus       492 -----~~~~~~~~~l~~-l~~~~~-------------------------------------------~~~i~~~----~~  518 (587)
T PRK07431        492 -----EDREAAQKVLRE-LAKQLP-------------------------------------------GAEVEDG----PA  518 (587)
T ss_pred             -----HHHHHHHHHHHH-HHHhcC-------------------------------------------CceEEEe----CC
Confidence                 122222222222 221110                                           0112221    23


Q ss_pred             eEEEEEEec---CCcChHHHHHHHHHhCCceEEEEE
Q 044728          259 YTVVNLRCP---DRPKLLFDAVCTLTDMQYVVYHAT  291 (450)
Q Consensus       259 ~t~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~  291 (450)
                      ...|.|.|.   .+||+++++..+|++.|++|+...
T Consensus       519 va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~  554 (587)
T PRK07431        519 IAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA  554 (587)
T ss_pred             eEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence            456777775   789999999999999999996554

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.86  E-value=0.065  Score=41.30  Aligned_cols=61  Identities=15%  Similarity=0.140  Sum_probs=41.4

Q ss_pred             EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec--Cce-eeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR--GSQ-AVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~--g~~-a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      +.+.-+|+||-|++++..|+++|+||.+......  +.. ..-.+.++...     +...++|.++|.+
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~-----~~~~~~i~~~L~~   65 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMD-----RSKENELIEELKA   65 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEec-----chHHHHHHHHHhC
Confidence            6788999999999999999999999998865544  222 22233332211     1235677777655

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=95.85  E-value=0.038  Score=42.25  Aligned_cols=46  Identities=22%  Similarity=0.407  Sum_probs=37.5

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEee
Q 044728          128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITS  173 (450)
Q Consensus       128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~  173 (450)
                      +.+...|+||.+++++..|+++|+||.+......  ++...-+|.+..
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~   49 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE   49 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence            4578999999999999999999999998887653  456666666654

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=95.84  E-value=0.021  Score=42.65  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=30.6

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee
Q 044728          128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH  161 (450)
Q Consensus       128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~  161 (450)
                      +.+..+|+||-|++++.+|+++|+||.+...+..
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~   35 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVE   35 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEcc
Confidence            6788899999999999999999999998887554

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.83  E-value=0.06  Score=41.51  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=30.3

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee
Q 044728          128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH  161 (450)
Q Consensus       128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~  161 (450)
                      +.+..+|+||-|++++..|+++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            5778999999999999999999999998876553

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=95.82  E-value=0.031  Score=42.08  Aligned_cols=46  Identities=22%  Similarity=0.362  Sum_probs=36.1

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEee
Q 044728          128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITS  173 (450)
Q Consensus       128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~  173 (450)
                      +.+.+.|+||.+++++..|+++|+||.+......  ++...-.+.+.+
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~   49 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQ   49 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCC
Confidence            6788999999999999999999999998887663  344444444444

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=95.79  E-value=0.11  Score=41.02  Aligned_cols=48  Identities=25%  Similarity=0.339  Sum_probs=39.1

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEee
Q 044728          126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-SRMASVVYITS  173 (450)
Q Consensus       126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~f~V~~  173 (450)
                      +.+.+..+|+||.|+++...|+++|+||.+....... +...-.|+|.-
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~   50 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF   50 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence            4577788999999999999999999999998876653 34556777766

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.77  E-value=0.072  Score=36.94  Aligned_cols=35  Identities=37%  Similarity=0.616  Sum_probs=31.4

Q ss_pred             EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC
Q 044728          340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG  374 (450)
Q Consensus       340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g  374 (450)
                      |.+.+.|+||++++|+++|+++|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46789999999999999999999999999987654

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.75  E-value=0.089  Score=38.47  Aligned_cols=46  Identities=24%  Similarity=0.442  Sum_probs=36.4

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEee
Q 044728          128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-SRMASVVYITS  173 (450)
Q Consensus       128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~f~V~~  173 (450)
                      +.+.+.|+||.++.++..|.+++++|.+..+...+ +.....|.+..
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~   47 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEV   47 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEE
Confidence            45778999999999999999999999999887655 33444454543

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.72  E-value=0.014  Score=44.36  Aligned_cols=45  Identities=11%  Similarity=0.025  Sum_probs=36.3

Q ss_pred             EEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEe
Q 044728          262 VNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIR  306 (450)
Q Consensus       262 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~  306 (450)
                      +.+.+.|+||++++++..|+++|+||......+.+|.+.-.|.+.
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~   46 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID   46 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence            577899999999999999999999998876555556666555554

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.68  E-value=0.092  Score=40.81  Aligned_cols=63  Identities=17%  Similarity=0.345  Sum_probs=45.0

Q ss_pred             EEeeCCCcchHHHHHHHHHHCCceEEEEEEeec-CceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          341 ELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR-GSQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       341 ev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~-g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      -+...|+||-|++|...|+++|+||.+...... +....-.|||.-. |. ..+...+.+.+.|.+
T Consensus         3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~-~~-~~~~~~~~~l~~l~~   66 (75)
T cd04880           3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE-GH-IDDPDVKEALEELKR   66 (75)
T ss_pred             EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE-CC-CCCHHHHHHHHHHHH
Confidence            345579999999999999999999999976644 3467778989554 43 122444555555554

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.67  E-value=0.085  Score=40.34  Aligned_cols=62  Identities=21%  Similarity=0.369  Sum_probs=42.5

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec--CceeeeEEEEEeCCCCCCChHHHHHHHHHHhhcc
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR--GSQAVNVFYVVDASGNPVKSETIESVRKEIGLTI  407 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~--g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~  407 (450)
                      +.+.+..+|+||.|..|+++|+++|+||.+....-.  ++...=.|.+...+        .+++.+.|.+..
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~--------~~~~~~~L~~~G   65 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN--------PRPIIEDLRRAG   65 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC--------HHHHHHHHHHCC
Confidence            468889999999999999999999999998865432  23344344442211        125666666543

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.58  E-value=0.08  Score=41.35  Aligned_cols=62  Identities=18%  Similarity=0.293  Sum_probs=44.3

Q ss_pred             EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHh
Q 044728          339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPVKSETIESVRKEIG  404 (450)
Q Consensus       339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~  404 (450)
                      .|-+...|+||-|++|-..|+.+|||+......... ..-+-.|||.-. |   .+...+++-+.|.
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~-~---~~~~~~~~l~~L~   64 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCE-V---DRGDLDQLISSLR   64 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEE-c---ChHHHHHHHHHHH
Confidence            344556899999999999999999999998877554 446778999544 5   2233444444443

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=95.52  E-value=0.089  Score=42.93  Aligned_cols=65  Identities=20%  Similarity=0.352  Sum_probs=47.4

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      +.|-+...|+||-|+++-..|+++|||+.+....... ..-+-.|||.-. |. . +...+++-+.|..
T Consensus        15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDie-g~-~-~~~~~~~l~~L~~   80 (90)
T cd04931          15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLD-KK-S-APALDPIIKSLRN   80 (90)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE-cC-C-CHHHHHHHHHHHH
Confidence            5666777999999999999999999999999887654 446678999544 54 2 3444444444443

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.47  E-value=0.057  Score=40.94  Aligned_cols=56  Identities=13%  Similarity=0.217  Sum_probs=39.2

Q ss_pred             CCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728          134 DRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL  197 (450)
Q Consensus       134 DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l  197 (450)
                      |+||.|.+|+++|...|.||.+..+...  ++...-++.+..    .    +...+.|.+.|.+..
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~----~----~~~i~~l~~Ql~Kli   58 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG----D----DREIEQLVKQLEKLI   58 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---------CCHHHHHHHHHHCST
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee----C----chhHHHHHHHHhccC
Confidence            7899999999999999999999999873  444454554444    1    134566777776543

>PRK04435 hypothetical protein; Provisional

Probab=95.44  E-value=0.077  Score=47.35  Aligned_cols=74  Identities=11%  Similarity=0.068  Sum_probs=53.3

Q ss_pred             EEeecCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCc
Q 044728           27 TVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGP  105 (450)
Q Consensus        27 ~i~~~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~  105 (450)
                      -+.....+..+.+.+.++|+||+|++|+.+|++.|+||....... .+|.+.-.|.|...+.     ...++.|.+.|..
T Consensus        60 ~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~~  134 (147)
T PRK04435         60 PFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLRN  134 (147)
T ss_pred             CccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHHc
Confidence            344444566789999999999999999999999999999888766 4576665666644321     1245556566544

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.33  E-value=0.026  Score=43.87  Aligned_cols=66  Identities=17%  Similarity=0.263  Sum_probs=46.8

Q ss_pred             EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec--Cce--eeeEEEEEeCCCCCCC-hHHHHHHHHHHhh
Q 044728          339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR--GSQ--AVNVFYVVDASGNPVK-SETIESVRKEIGL  405 (450)
Q Consensus       339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~--g~~--a~D~F~v~~~~g~~l~-~~~~~~L~~~l~~  405 (450)
                      -+|+.+.-||-++|+||-+|..+|+.|.+|.|.-+  +++  .+-.|.+.+..+. ++ ...+.++.+.+..
T Consensus         2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~-~~~~~~r~~i~drv~~   72 (77)
T cd04898           2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KLGGRQRSKVVDRVTK   72 (77)
T ss_pred             cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCcc-ccchHHHHHHHHHHHH
Confidence            47899999999999999999999999999999632  344  4455666555433 44 2334555544443

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=95.27  E-value=0.16  Score=45.31  Aligned_cols=69  Identities=19%  Similarity=0.244  Sum_probs=51.4

Q ss_pred             cCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728          120 QAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITSEATGLPIDDPDTLAKIKRLLL  194 (450)
Q Consensus       120 ~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~  194 (450)
                      ........|.+...|+||+|++|..+|+++|+||........ ++.+.-.|.+...  +  .  ...++.|.+.|+
T Consensus        64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs--~--~--~~~L~~Li~~L~  133 (147)
T PRK04435         64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS--S--M--EGDIDELLEKLR  133 (147)
T ss_pred             cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC--C--h--HHHHHHHHHHHH
Confidence            346678899999999999999999999999999998876553 4556666666552  1  1  125566666664

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.18  E-value=0.044  Score=42.65  Aligned_cols=70  Identities=20%  Similarity=0.227  Sum_probs=50.1

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728          128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL  197 (450)
Q Consensus       128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l  197 (450)
                      ++++++-||-.|+|+|-+|+..|+-|.+|.|..+  +++-..+|.+.-...+..+..+..-.++.+.+...+
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l   74 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL   74 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999753  667666664433122333444444466666665544

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.18  E-value=0.099  Score=39.61  Aligned_cols=56  Identities=21%  Similarity=0.468  Sum_probs=36.9

Q ss_pred             CCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          346 DRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       346 DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      |+||.|.+|+.+|...|+||++..+........-.+.++-. |.   +...++|.+.|.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~-~~---~~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS-GD---DREIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE-S----CCHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe-eC---chhHHHHHHHHhc
Confidence            78999999999999999999999998743332222333222 11   2345667777765

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.13  E-value=0.11  Score=35.88  Aligned_cols=34  Identities=18%  Similarity=0.320  Sum_probs=31.1

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 044728           39 IKVDSANKRGSLLELVQVLNDLDLIIRRAYISSD   72 (450)
Q Consensus        39 V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~   72 (450)
                      |.|.++|++|++.+++++|.+.|++|........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~   34 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTS   34 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEc
Confidence            4688999999999999999999999999998763

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK06635 aspartate kinase; Reviewed

Probab=95.09  E-value=0.51  Score=49.02  Aligned_cols=108  Identities=15%  Similarity=0.206  Sum_probs=68.5

Q ss_pred             EEEEEE-cCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCCcc
Q 044728           37 TLIKVD-SANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLR  114 (450)
Q Consensus        37 ~~V~V~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~~~  114 (450)
                      ..|+|. ..++||.++++..+|.+.|+||.-...+. .+|+..-.|.|...+.     +...+.|++.-....      .
T Consensus       263 ~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~~~~~~~------~  331 (404)
T PRK06635        263 AKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEEVKDEIG------A  331 (404)
T ss_pred             EEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHHHHHHcC------c
Confidence            444444 47899999999999999999999655543 3334444566532111     112223333110000      0


Q ss_pred             eeeeccCCCceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 044728          115 RSVGVQAALEHTTIELTG---RDRPGLLSEVFAVLSDLKCNVMGAE  157 (450)
Q Consensus       115 r~v~~~~~~~~t~i~v~~---~DrpGLl~~i~~~L~~~glnI~~A~  157 (450)
                      ..  .....+...+++.+   +|.||.++++..+|+++|+||....
T Consensus       332 ~~--i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        332 ES--VTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             ce--EEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence            01  12345677788876   6899999999999999999998753

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=95.09  E-value=0.74  Score=47.77  Aligned_cols=106  Identities=18%  Similarity=0.322  Sum_probs=68.5

Q ss_pred             CeEEEEEE---cCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCC
Q 044728           35 KATLIKVD---SANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFR  111 (450)
Q Consensus        35 ~~~~V~V~---~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~  111 (450)
                      +...|+|.   .++++|.++++..+|.+.|++|.--.....+...  +|.|...+     -++..+.|++.+....    
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~I--s~~V~~~d-----~~~a~~~L~~~~~~~~----  327 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSI--SLTVDETD-----ADEAVRALKDQSGAAG----  327 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCceE--EEEEeHHH-----HHHHHHHHHHHHHhcC----
Confidence            34567777   6789999999999999999999744332122112  35552211     1223344444332111    


Q ss_pred             CcceeeeccCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEE
Q 044728          112 SLRRSVGVQAALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNVMG  155 (450)
Q Consensus       112 ~~~r~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI~~  155 (450)
                        ...  .....+...|.+.+.   ++||+++++..+|++.|+||..
T Consensus       328 --~~~--i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       328 --LDR--VEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             --Cce--EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence              001  123556788888884   7899999999999999999984

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK07334 threonine dehydratase; Provisional

Probab=95.02  E-value=0.12  Score=53.73  Aligned_cols=65  Identities=17%  Similarity=0.196  Sum_probs=49.6

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec-----CceeeeEEEEEeCCCCCCChHHHHHHHHHHhhc
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR-----GSQAVNVFYVVDASGNPVKSETIESVRKEIGLT  406 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~-----g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~  406 (450)
                      ...|+|.+.||||+|++|+++|++.++||.+....+.     ++.+.-.|.|.-.+     .+++.++.+.|...
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d-----~~~L~~vi~~Lr~~  395 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD-----AAHLQEVIAALRAA  395 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC-----HHHHHHHHHHHHHc
Confidence            4789999999999999999999999999999998764     34444445443332     25677777777763

>PRK07334 threonine dehydratase; Provisional

Probab=95.00  E-value=0.15  Score=53.13  Aligned_cols=66  Identities=20%  Similarity=0.241  Sum_probs=50.4

Q ss_pred             CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728          123 LEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-----NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLY  195 (450)
Q Consensus       123 ~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-----~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (450)
                      .-...|.|.+.||||+|++|+.+|++.++||.+....+.     ++.+.-.|.+.-       .+.++++++.+.|++
T Consensus       324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA  394 (403)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            335899999999999999999999999999999998764     344444444443       134677777777765

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=94.91  E-value=0.2  Score=38.17  Aligned_cols=46  Identities=20%  Similarity=0.350  Sum_probs=36.5

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEE
Q 044728           37 TLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS--DGEWFMDVFHV   82 (450)
Q Consensus        37 ~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V   82 (450)
                      +.+.+..+|+||.+..++.+|.+.|+||......-  .++...-.|.+
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v   49 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRV   49 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEE
Confidence            57899999999999999999999999999887642  33555433443

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=94.46  E-value=2.1  Score=44.38  Aligned_cols=101  Identities=10%  Similarity=0.118  Sum_probs=67.2

Q ss_pred             CceEEEEEE---ecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc-
Q 044728          257 KGYTVVNLR---CPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR-  332 (450)
Q Consensus       257 ~~~t~v~V~---~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~-  332 (450)
                      .+...|.|.   ..++||+++++..+|+++|++|..-......  .--+|.|..         +..+++.+.|.+.+.. 
T Consensus       258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~---------~d~~~a~~~L~~~~~~~  326 (401)
T TIGR00656       258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE---------TDADEAVRALKDQSGAA  326 (401)
T ss_pred             CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH---------HHHHHHHHHHHHHHHhc
Confidence            355678888   5788999999999999999999754322111  222355532         1233344444443211 


Q ss_pred             c------CCCceEEEEeeC---CCcchHHHHHHHHHHCCceEEEE
Q 044728          333 R------TSEGISLELCCE---DRAGLLSDVTRIFRENGLSVTRA  368 (450)
Q Consensus       333 r------~~~~t~iev~~~---DrpGLL~~It~~l~~~gi~I~~A  368 (450)
                      .      .....+|.|.+.   ++||+++++.++|++.||||...
T Consensus       327 ~~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i  371 (401)
T TIGR00656       327 GLDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI  371 (401)
T ss_pred             CCceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence            1      123456777775   79999999999999999999853

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK11899 prephenate dehydratase; Provisional

Probab=94.37  E-value=0.18  Score=49.93  Aligned_cols=53  Identities=23%  Similarity=0.310  Sum_probs=43.3

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCC
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNP  390 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~  390 (450)
                      .|.|-+...|+||.|+++-..|+++|||+.+....-.+ ..-+-+|||. -+|..
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id-~eg~~  247 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYAD-IEGHP  247 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEE-EECCC
Confidence            45666666899999999999999999999999988654 5578899994 44654

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=94.32  E-value=0.27  Score=38.53  Aligned_cols=49  Identities=16%  Similarity=0.255  Sum_probs=39.4

Q ss_pred             EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCC
Q 044728          340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGN  389 (450)
Q Consensus       340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~  389 (450)
                      |-+...|+||-|+++-..|+.+|||+......... ...+-.|||.-. |.
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e-~~   52 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCE-CD   52 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE-cC
Confidence            44556899999999999999999999999887654 447789999544 44

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06635 aspartate kinase; Reviewed

Probab=93.85  E-value=0.79  Score=47.61  Aligned_cols=103  Identities=12%  Similarity=0.209  Sum_probs=68.4

Q ss_pred             ceEEEEEE-ecCCcChHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHH---Hhc
Q 044728          258 GYTVVNLR-CPDRPKLLFDAVCTLTDMQYVVYHATVIAE-SPEAYQEYYIRHVDGNPISSEAERQRVINCLEAA---IKR  332 (450)
Q Consensus       258 ~~t~v~V~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~---L~~  332 (450)
                      +...|+|. ..++||.++++..+|++.|+||........ +|..--.|.|.+         +..++..+.|.+.   +.-
T Consensus       261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~---------~~~~~a~~~L~~~~~~~~~  331 (404)
T PRK06635        261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR---------DDLEKALELLEEVKDEIGA  331 (404)
T ss_pred             CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH---------HHHHHHHHHHHHHHHHcCc
Confidence            34445544 467899999999999999999996543322 234555566642         1233334444431   111


Q ss_pred             c-C---CCceEEEEee---CCCcchHHHHHHHHHHCCceEEEEE
Q 044728          333 R-T---SEGISLELCC---EDRAGLLSDVTRIFRENGLSVTRAE  369 (450)
Q Consensus       333 r-~---~~~t~iev~~---~DrpGLL~~It~~l~~~gi~I~~Ak  369 (450)
                      + .   ....++.|.+   .|+||++++|.++|++.||||....
T Consensus       332 ~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        332 ESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             ceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence            1 1   2346788876   5999999999999999999998853

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.60  E-value=0.047  Score=43.86  Aligned_cols=61  Identities=28%  Similarity=0.387  Sum_probs=42.4

Q ss_pred             EEEEeeCC-CcchHHHHHHHHHHCCceEEEEEEe-ec----C----ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          339 SLELCCED-RAGLLSDVTRIFRENGLSVTRAEVT-TR----G----SQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       339 ~iev~~~D-rpGLL~~It~~l~~~gi~I~~AkI~-T~----g----~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      ++.|.+.| ++|++++|+++|+++|+||...+-- .+    +    .+..-.|.|+   |.+.   ..+.|+++|.+
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~---~~~~---~~~~lr~~L~~   71 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVR---GQPA---DLEALRAALLE   71 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEe---CCCC---CHHHHHHHHHH
Confidence            47889999 9999999999999999999765422 11    1    2345567775   3332   34566676664

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.55  E-value=0.48  Score=36.13  Aligned_cols=60  Identities=25%  Similarity=0.300  Sum_probs=39.3

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE-EEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728          128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVV-YITSEATGLPIDDPDTLAKIKRLLLY  195 (450)
Q Consensus       128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f-~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (450)
                      +.|.-+|+||-|.+++.+++. |.||...+-...+.....++ .+..       .+++..+.+.+.|.+
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~-------~~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV-------PDREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            357789999999999999999 99998775543321222222 2322       134566777776654

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=93.54  E-value=0.35  Score=53.96  Aligned_cols=63  Identities=17%  Similarity=0.245  Sum_probs=48.8

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG--SQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g--~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      ..|.|.+.||+|||++|+.++++.++||..+.+.+..  ..+.-.|.|.-.+     -.++.++.+.|..
T Consensus       667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~-----~~~L~~l~~~L~~  731 (743)
T PRK10872        667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN-----LQVLGRVLGKLNQ  731 (743)
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC-----HHHHHHHHHHHhc
Confidence            5899999999999999999999999999999987753  4455556554342     2466677776664

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.45  E-value=0.049  Score=43.76  Aligned_cols=62  Identities=21%  Similarity=0.302  Sum_probs=43.8

Q ss_pred             EEEEEeCC-CcchHHHHHHHHHhCCceEEEEEEEee---------CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHh
Q 044728          127 TIELTGRD-RPGLLSEVFAVLSDLKCNVMGAEVWTH---------NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYV  196 (450)
Q Consensus       127 ~i~v~~~D-rpGLl~~i~~~L~~~glnI~~A~i~t~---------~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~  196 (450)
                      .|+|.|+| ..|++++++++|+++|+||.+.+-.+.         .......|.|+.+    +. +   .+.+++.|.++
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~~-~---~~~lr~~L~~l   72 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----PA-D---LEALRAALLEL   72 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----CC-C---HHHHHHHHHHH
Confidence            37899999 999999999999999999976554321         1245567777752    11 2   35677777643

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=93.13  E-value=0.47  Score=52.94  Aligned_cols=64  Identities=22%  Similarity=0.311  Sum_probs=49.6

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728          124 EHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITSEATGLPIDDPDTLAKIKRLLL  194 (450)
Q Consensus       124 ~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~  194 (450)
                      -...|.|.+.||+|+|++|+.++++.++||.+..+.+.  ++.+...|.|.-       .+.+.+.++.+.|+
T Consensus       665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L~  730 (743)
T PRK10872        665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKLN  730 (743)
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence            35688999999999999999999999999999998775  455555555543       13466777777765

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=93.08  E-value=0.41  Score=45.20  Aligned_cols=48  Identities=17%  Similarity=0.285  Sum_probs=39.7

Q ss_pred             CceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec--CceeeeEEEE
Q 044728          336 EGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR--GSQAVNVFYV  383 (450)
Q Consensus       336 ~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~--g~~a~D~F~v  383 (450)
                      ..+.+-+.-.|+||.+..|+.+|.++||||....+.-.  |+.|.-+.-+
T Consensus       147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v  196 (208)
T TIGR00719       147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI  196 (208)
T ss_pred             CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence            35678888899999999999999999999999998743  5666655555

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=93.04  E-value=1  Score=34.82  Aligned_cols=64  Identities=16%  Similarity=0.239  Sum_probs=42.7

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728          128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNS-RMASVVYITSEATGLPIDDPDTLAKIKRLLLY  195 (450)
Q Consensus       128 i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~-~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (450)
                      +.+..+|+||-|+++..+|+++|+||.+.......+ ...-.|++.-  .|. . ++...+.+.+.|.+
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~--~~~-~-~~~~~~~~l~~l~~   66 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF--EGH-I-DDPDVKEALEELKR   66 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE--ECC-C-CCHHHHHHHHHHHH
Confidence            345568999999999999999999999986665433 4455666665  232 2 22344545455543

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.95  E-value=0.58  Score=35.65  Aligned_cols=31  Identities=16%  Similarity=0.114  Sum_probs=27.1

Q ss_pred             EEEecCCcChHHHHHHHHHhCCceEEEEEEEe
Q 044728          263 NLRCPDRPKLLFDAVCTLTDMQYVVYHATVIA  294 (450)
Q Consensus       263 ~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t  294 (450)
                      .|.-|||||-|.+++..++. |.||.+.+-..
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~   32 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRN   32 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEc
Confidence            57789999999999999999 99999875544

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=92.84  E-value=0.46  Score=36.09  Aligned_cols=47  Identities=17%  Similarity=0.431  Sum_probs=37.2

Q ss_pred             CCceEEEEEEeC----CCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728          122 ALEHTTIELTGR----DRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS  173 (450)
Q Consensus       122 ~~~~t~i~v~~~----DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~  173 (450)
                      +.++..|+|.++    |.||++++++..|++.|+||....  |   ...+.+.|..
T Consensus         3 ~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~   53 (65)
T PF13840_consen    3 EEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE   53 (65)
T ss_dssp             ESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred             cCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence            346778888887    799999999999999999998777  4   4456666665

>PRK06291 aspartate kinase; Provisional

Probab=92.60  E-value=4.2  Score=43.21  Aligned_cols=108  Identities=15%  Similarity=0.257  Sum_probs=70.8

Q ss_pred             CeEEEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCC
Q 044728           35 KATLIKVDSA---NKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFR  111 (450)
Q Consensus        35 ~~~~V~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~  111 (450)
                      +...|+|.+.   +.+|+++++..+|.+.|++|.-....+.....  +|.|...+     -+...+.|++.+....    
T Consensus       320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI--sf~V~~~d-----~~~av~~L~~~~~~~~----  388 (465)
T PRK06291        320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI--SLVVDEAD-----LEKALKALRREFGEGL----  388 (465)
T ss_pred             CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE--EEEEeHHH-----HHHHHHHHHHHHHHhc----
Confidence            3466777653   78999999999999999999865544432122  25553321     0223444555544211    


Q ss_pred             CcceeeeccCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 044728          112 SLRRSVGVQAALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNVMGAE  157 (450)
Q Consensus       112 ~~~r~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI~~A~  157 (450)
                        ...+  ....+...|.+.|.   +++|+.+++..+|+..|+||....
T Consensus       389 --~~~i--~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is  433 (465)
T PRK06291        389 --VRDV--TFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS  433 (465)
T ss_pred             --Ccce--EEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence              0011  23455778888885   799999999999999999998443

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=92.58  E-value=0.57  Score=52.20  Aligned_cols=64  Identities=8%  Similarity=0.163  Sum_probs=48.7

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCc-eeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGS-QAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~-~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      ...|.|.+.||+|+|.+|+.++++.++||.++.+.+..+ .+.-.|-|.-.+     -.++..|.+.|..
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~-----~~~L~~i~~~Lr~  690 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARD-----RVHLANIMRKIRV  690 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECC-----HHHHHHHHHHHhC
Confidence            358999999999999999999999999999999877653 445455554332     2466666666664

>PRK08210 aspartate kinase I; Reviewed

Probab=92.50  E-value=4.2  Score=42.24  Aligned_cols=99  Identities=19%  Similarity=0.277  Sum_probs=66.3

Q ss_pred             CeEEEEEEcCCC-cchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCCc
Q 044728           35 KATLIKVDSANK-RGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSL  113 (450)
Q Consensus        35 ~~~~V~V~~~Dr-pGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~~  113 (450)
                      +...|+|...+. ||.+++|..+|.+.|+||.-..++. . ..  +|.+...         ..+++++.|.....     
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~-~-~i--s~~v~~~---------~~~~a~~~l~~~~~-----  331 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP-T-EV--VFTVSDE---------DSEKAKEILENLGL-----  331 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC-c-eE--EEEEcHH---------HHHHHHHHHHHhCC-----
Confidence            446777776554 9999999999999999999764442 2 22  3554321         12233444433210     


Q ss_pred             ceeeeccCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEE
Q 044728          114 RRSVGVQAALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNVMG  155 (450)
Q Consensus       114 ~r~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI~~  155 (450)
                        .+  ....+...|.|.+.   ++||+++++..+|++.|+||..
T Consensus       332 --~v--~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        332 --KP--SVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             --cE--EEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence              11  13455777888874   8999999999999999999974

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=92.50  E-value=0.55  Score=44.35  Aligned_cols=54  Identities=20%  Similarity=0.206  Sum_probs=44.5

Q ss_pred             cCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEee
Q 044728          120 QAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITS  173 (450)
Q Consensus       120 ~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~  173 (450)
                      +..++...+.+.-.|+||....++.+|.++|+||...++...  ++.+..+..+..
T Consensus       143 d~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~  198 (208)
T TIGR00719       143 EFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK  198 (208)
T ss_pred             EecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence            556677788888999999999999999999999999999875  455665555544

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=92.24  E-value=0.56  Score=46.17  Aligned_cols=54  Identities=19%  Similarity=0.328  Sum_probs=44.3

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCC
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPV  391 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l  391 (450)
                      .|.|=+...|+||-|+++-.+|+.+|||+.+....-.+ .-.+-+|||. -+|..-
T Consensus       194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD-~eg~~~  248 (279)
T COG0077         194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFID-IEGHID  248 (279)
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEE-EecCcC
Confidence            57777788899999999999999999999999987544 5588899994 445543

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=92.15  E-value=1.3  Score=36.06  Aligned_cols=68  Identities=12%  Similarity=0.154  Sum_probs=44.1

Q ss_pred             eEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecC-CeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHH
Q 044728          259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAES-PEAYQEYYIRHVDGNPISSEAERQRVINCLEAAI  330 (450)
Q Consensus       259 ~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~-g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L  330 (450)
                      .+-+.+..+|+||-|+++-..|+.+|+|+..-.-.-.. ...--.|+|. .+|. . ++ ..+.+.+.|.+.|
T Consensus        14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVD-ieg~-~-~~-~~~~~l~~L~~~~   82 (90)
T cd04931          14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFIN-LDKK-S-AP-ALDPIIKSLRNDI   82 (90)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE-EEcC-C-CH-HHHHHHHHHHHHh
Confidence            35566666999999999999999999999977665432 2222345554 3444 2 22 4555555555544

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=92.10  E-value=0.74  Score=51.32  Aligned_cols=63  Identities=17%  Similarity=0.220  Sum_probs=48.8

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728          125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-SRMASVVYITSEATGLPIDDPDTLAKIKRLLL  194 (450)
Q Consensus       125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~  194 (450)
                      ...|.|.+.||+|+|++|+.+++..++||.++.+.+.+ +.+...|.+.-       .+.+.+.+|-..|+
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr  689 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIR  689 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence            56888999999999999999999999999999987764 44455555543       13456777777765

>PRK09034 aspartate kinase; Reviewed

Probab=91.90  E-value=4.8  Score=42.64  Aligned_cols=108  Identities=14%  Similarity=0.177  Sum_probs=66.9

Q ss_pred             eEEEEEE---cCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCC
Q 044728           36 ATLIKVD---SANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRS  112 (450)
Q Consensus        36 ~~~V~V~---~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~  112 (450)
                      .+.|+|.   .++++|.++++.++|++.|++|.-.  . .+... -+|.|.+.+   +.. ..+..+...|.....    
T Consensus       308 i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~-ss~~s-is~~v~~~~---~~~-a~~~~l~~el~~~~~----  375 (454)
T PRK09034        308 FTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--P-SGIDD-LSIIIRERQ---LTP-KKEDEILAEIKQELN----  375 (454)
T ss_pred             EEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--c-CCCcE-EEEEEeHHH---hhH-HHHHHHHHHHHHhhC----
Confidence            3556665   3678999999999999999999864  2 22222 236654322   110 011223222321110    


Q ss_pred             cceeeeccCCCceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEE
Q 044728          113 LRRSVGVQAALEHTTIELTG---RDRPGLLSEVFAVLSDLKCNVMGAEV  158 (450)
Q Consensus       113 ~~r~v~~~~~~~~t~i~v~~---~DrpGLl~~i~~~L~~~glnI~~A~i  158 (450)
                       ...  .....+...|.+.+   .+.||+++++..+|+++|+||.....
T Consensus       376 -~~~--I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq  421 (454)
T PRK09034        376 -PDE--LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQ  421 (454)
T ss_pred             -Cce--EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence             001  12345677888866   47899999999999999999987654

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=91.87  E-value=0.63  Score=48.20  Aligned_cols=53  Identities=23%  Similarity=0.354  Sum_probs=43.3

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEee-cCceeeeEEEEEeCCCCC
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTT-RGSQAVNVFYVVDASGNP  390 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T-~g~~a~D~F~v~~~~g~~  390 (450)
                      .|.|-+...|+||.|+++-..|+.+|||+.+....- .+..-+-.|||.- +|..
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~-eg~~  350 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV-QANL  350 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE-eCCC
Confidence            455667778999999999999999999999999884 4556888999944 4644

>PRK08210 aspartate kinase I; Reviewed

Probab=91.86  E-value=2.8  Score=43.58  Aligned_cols=97  Identities=10%  Similarity=0.238  Sum_probs=66.3

Q ss_pred             CceEEEEEEecCC-cChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc--
Q 044728          257 KGYTVVNLRCPDR-PKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR--  333 (450)
Q Consensus       257 ~~~t~v~V~~~Dr-pGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r--  333 (450)
                      .+-..|+|...+. ||.++++...|+++|+||.......  ..  -+|.+..         ...+++.+.|.+. ...  
T Consensus       269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~~--is~~v~~---------~~~~~a~~~l~~~-~~~v~  334 (403)
T PRK08210        269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--TE--VVFTVSD---------EDSEKAKEILENL-GLKPS  334 (403)
T ss_pred             CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--ce--EEEEEcH---------HHHHHHHHHHHHh-CCcEE
Confidence            3455677776665 9999999999999999999773331  21  2355542         1334444444432 111  


Q ss_pred             -CCCceEEEEeeC---CCcchHHHHHHHHHHCCceEEE
Q 044728          334 -TSEGISLELCCE---DRAGLLSDVTRIFRENGLSVTR  367 (450)
Q Consensus       334 -~~~~t~iev~~~---DrpGLL~~It~~l~~~gi~I~~  367 (450)
                       ...-.+|.|.+.   ++||+++++.++|++.||+|.+
T Consensus       335 ~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        335 VRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             EeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence             123467777775   8999999999999999999975

>PRK08818 prephenate dehydrogenase; Provisional

Probab=91.85  E-value=0.46  Score=48.88  Aligned_cols=50  Identities=18%  Similarity=0.331  Sum_probs=40.0

Q ss_pred             ceEEEEeeC-CCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCC
Q 044728          337 GISLELCCE-DRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDAS  387 (450)
Q Consensus       337 ~t~iev~~~-DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~  387 (450)
                      .+.|.+.-+ |+||.|++|+.+|+.+||||.+..+ .....-+..|||.-..
T Consensus       295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~~  345 (370)
T PRK08818        295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFEP  345 (370)
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEec
Confidence            466777776 9999999999999999999999998 4444444459996654

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=91.84  E-value=0.79  Score=51.04  Aligned_cols=64  Identities=22%  Similarity=0.262  Sum_probs=47.4

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      ...|.|.+.||+|+|++|+.++++.++||.+..+.+.. ..+.-.|-|.-.+     -.++..+...|..
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~-----~~~L~~ii~~L~~  674 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN-----YKHLLKIMLKIKT  674 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC-----HHHHHHHHHHHhC
Confidence            35899999999999999999999999999999998764 3344344443332     2456666666653

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK09034 aspartate kinase; Reviewed

Probab=91.38  E-value=4.5  Score=42.86  Aligned_cols=107  Identities=11%  Similarity=0.167  Sum_probs=68.7

Q ss_pred             ceEEEEEEe---cCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc-
Q 044728          258 GYTVVNLRC---PDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR-  333 (450)
Q Consensus       258 ~~t~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r-  333 (450)
                      +.+.|++.+   +++||+++++...|+++|++|.-.   + .+..--+|.|.+.+   ... .....+.+.|...+... 
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~-ss~~sis~~v~~~~---~~~-a~~~~l~~el~~~~~~~~  378 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---P-SGIDDLSIIIRERQ---LTP-KKEDEILAEIKQELNPDE  378 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---c-CCCcEEEEEEeHHH---hhH-HHHHHHHHHHHHhhCCce
Confidence            456677764   678999999999999999999875   2 22222346666421   100 01123333333222110 


Q ss_pred             ---CCCceEEEEeeC---CCcchHHHHHHHHHHCCceEEEEEEee
Q 044728          334 ---TSEGISLELCCE---DRAGLLSDVTRIFRENGLSVTRAEVTT  372 (450)
Q Consensus       334 ---~~~~t~iev~~~---DrpGLL~~It~~l~~~gi~I~~AkI~T  372 (450)
                         ...-..|.+.+.   ++||++++|..+|++.||||....-.+
T Consensus       379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence               023467888654   899999999999999999999875433

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=91.31  E-value=1  Score=50.24  Aligned_cols=64  Identities=19%  Similarity=0.204  Sum_probs=49.0

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728          124 EHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-SRMASVVYITSEATGLPIDDPDTLAKIKRLLL  194 (450)
Q Consensus       124 ~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~  194 (450)
                      -...|.|.+.||+|+|++|+.+++..++||.+..+.+.. +.+...|.|.-       .+...+.+|-..|+
T Consensus       609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~  673 (683)
T TIGR00691       609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIK  673 (683)
T ss_pred             eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence            356888999999999999999999999999999997763 55544555443       13456677776665

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=91.20  E-value=0.76  Score=41.43  Aligned_cols=37  Identities=14%  Similarity=0.408  Sum_probs=33.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCC
Q 044728          127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNS  163 (450)
Q Consensus       127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~  163 (450)
                      -+.+.+.++||.|.++++.++++|.||..++.+..++
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~   40 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKD   40 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhcc
Confidence            3678899999999999999999999999999988643

>PRK06291 aspartate kinase; Provisional

Probab=90.76  E-value=6.6  Score=41.76  Aligned_cols=102  Identities=10%  Similarity=0.157  Sum_probs=68.6

Q ss_pred             CceEEEEEEec---CCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc-
Q 044728          257 KGYTVVNLRCP---DRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR-  332 (450)
Q Consensus       257 ~~~t~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~-  332 (450)
                      .+...|.|.+.   +.||+++++..+|+++|++|......+..  .--+|.|..         ...++..+.|.+.+.. 
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~---------~d~~~av~~L~~~~~~~  387 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDE---------ADLEKALKALRREFGEG  387 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeH---------HHHHHHHHHHHHHHHHh
Confidence            35567888765   68999999999999999999865333322  222355542         1223333444443321 


Q ss_pred             cC------CCceEEEEeeC---CCcchHHHHHHHHHHCCceEEEEE
Q 044728          333 RT------SEGISLELCCE---DRAGLLSDVTRIFRENGLSVTRAE  369 (450)
Q Consensus       333 r~------~~~t~iev~~~---DrpGLL~~It~~l~~~gi~I~~Ak  369 (450)
                      ..      ..-.+|.|.+.   +++|++.++..+|++.||+|....
T Consensus       388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is  433 (465)
T PRK06291        388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS  433 (465)
T ss_pred             cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence            11      23467888886   799999999999999999998544

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=90.55  E-value=0.51  Score=49.30  Aligned_cols=60  Identities=25%  Similarity=0.450  Sum_probs=47.4

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHH
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVR  400 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~  400 (450)
                      .+.|-+.-.|+||.++.|+..|+++|+||.+.+....|+.+.-+|-+   ++ ++.++-+++|+
T Consensus       338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~-~~~~~~~~~i~  397 (409)
T PRK11790        338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DA-DYAEEALDALK  397 (409)
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CC-CCcHHHHHHHH
Confidence            47888899999999999999999999999999999999777766655   33 33434444444

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=90.55  E-value=0.88  Score=38.86  Aligned_cols=50  Identities=12%  Similarity=0.085  Sum_probs=41.0

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCce-eeeEEEEEeC
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQ-AVNVFYVVDA  386 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~-a~D~F~v~~~  386 (450)
                      .+.|-+...|+||-|++|-..|+.+|||+........+.. -+-.|||.-.
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdie   91 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCE   91 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEE
Confidence            4667777799999999999999999999999998876544 5678888543

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06545 prephenate dehydrogenase; Validated

Probab=90.46  E-value=1.7  Score=44.50  Aligned_cols=50  Identities=20%  Similarity=0.268  Sum_probs=43.1

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeC
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDA  386 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~  386 (450)
                      .+.+.|.-+||||-|+.|+..|.+.||||.+.+|.-.-+...-++.++..
T Consensus       290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~  339 (359)
T PRK06545        290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFK  339 (359)
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeC
Confidence            48899999999999999999999999999999997666666666666555

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=90.44  E-value=1.5  Score=34.06  Aligned_cols=47  Identities=9%  Similarity=0.221  Sum_probs=36.8

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEee
Q 044728          127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNS-RMASVVYITS  173 (450)
Q Consensus       127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~-~~~d~f~V~~  173 (450)
                      .+.+..+|+||-|+++-..|+.+|+|+..-......+ ...=.|+|.-
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~   49 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC   49 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence            3455668999999999999999999999888766543 3455777765

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=90.16  E-value=1.2  Score=46.56  Aligned_cols=52  Identities=13%  Similarity=0.187  Sum_probs=44.6

Q ss_pred             CCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728          122 ALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS  173 (450)
Q Consensus       122 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~  173 (450)
                      ......|.+.-.|+||.++.|+.+|+++|+||...+..+.++.+.-+|.+..
T Consensus       335 ~~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~  386 (409)
T PRK11790        335 HPGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA  386 (409)
T ss_pred             CCCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC
Confidence            3467888889999999999999999999999999999888877777665543

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=90.03  E-value=2.5  Score=33.77  Aligned_cols=60  Identities=17%  Similarity=0.223  Sum_probs=37.1

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-eeCCeEEEEEEEeecCCCCCCCC-HHHHHHHHHHHHH
Q 044728          127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVW-THNSRMASVVYITSEATGLPIDD-PDTLAKIKRLLLY  195 (450)
Q Consensus       127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~-t~~~~~~d~f~V~~~~~g~~i~~-~~~~~~l~~~L~~  195 (450)
                      ++.|.-+|+||-|++++.+|+  +.||....-. ...+.+.-.+.+.. +      + ++..+++.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~-~------~~~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSV-A------NGAEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEe-C------CcHHHHHHHHHHHHH
Confidence            577888999999999999999  5555533222 22233333343433 1      2 3556777777654

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06382 threonine dehydratase; Provisional

Probab=90.01  E-value=4  Score=42.58  Aligned_cols=67  Identities=22%  Similarity=0.169  Sum_probs=48.3

Q ss_pred             CCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-----eCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728          122 ALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT-----HNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLY  195 (450)
Q Consensus       122 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-----~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (450)
                      ....+.+.|.-+|+||-|++++..|.++|+||.+.....     ..+...-.|.|...       +++..+.|.+.|++
T Consensus       327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~  398 (406)
T PRK06382        327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE  398 (406)
T ss_pred             cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            344778999999999999999999999999998876642     13445566666651       23444566666654

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=89.69  E-value=19  Score=38.21  Aligned_cols=120  Identities=14%  Similarity=0.202  Sum_probs=75.5

Q ss_pred             CCeEEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCC
Q 044728           34 RKATLIKVDS---ANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSF  110 (450)
Q Consensus        34 ~~~~~V~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~  110 (450)
                      ++.+.|+|..   ...+|..+++..+|.+.|+||.--........  -+|.|...+.     +...+.+++.......  
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~--  375 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA--  375 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc--
Confidence            4556666664   33459999999999999999985544432222  2366533221     2233444444432210  


Q ss_pred             CCcceeeeccCCCceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728          111 RSLRRSVGVQAALEHTTIELTG---RDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS  173 (450)
Q Consensus       111 ~~~~r~v~~~~~~~~t~i~v~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~  173 (450)
                             ......+...|.+++   ...||..+++..+|++.|+||....  +  ....-.|.|..
T Consensus       376 -------~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is--s--Se~~Is~vV~~  430 (447)
T COG0527         376 -------EVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS--S--SEISISFVVDE  430 (447)
T ss_pred             -------eEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE--c--CCceEEEEEcc
Confidence                   112345567777776   4778999999999999999999877  2  13444555554

>PRK09181 aspartate kinase; Validated

Probab=89.40  E-value=14  Score=39.53  Aligned_cols=105  Identities=16%  Similarity=0.213  Sum_probs=66.7

Q ss_pred             CeEEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCC
Q 044728           35 KATLIKVDS---ANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFR  111 (450)
Q Consensus        35 ~~~~V~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~  111 (450)
                      +.+.|+|.+   .+.+|+.+++.++|.+.|++|.  .+.+...  .-+|.|...  .    + ..+++.+.|.....   
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~--sis~~v~~~--~----~-~~~~~~~~L~~~~~---  393 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNAN--TITHYLWGS--L----K-TLKRVIAELEKRYP---  393 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCc--EEEEEEcCC--h----H-HHHHHHHHHHHhcC---
Confidence            456667754   3789999999999999999997  3433221  123555332  1    1 12233333322110   


Q ss_pred             CcceeeeccCCCceEEEEEEeCC--CcchHHHHHHHHHhCCceEEEEEE
Q 044728          112 SLRRSVGVQAALEHTTIELTGRD--RPGLLSEVFAVLSDLKCNVMGAEV  158 (450)
Q Consensus       112 ~~~r~v~~~~~~~~t~i~v~~~D--rpGLl~~i~~~L~~~glnI~~A~i  158 (450)
                        ...+  . ..+...|.++|..  +||+.+++..+|++.|+||..-..
T Consensus       394 --~~~i--~-~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q  437 (475)
T PRK09181        394 --NAEV--T-VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ  437 (475)
T ss_pred             --CceE--E-ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence              0012  1 2567888888754  899999999999999999976543

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=89.31  E-value=1.5  Score=48.60  Aligned_cols=65  Identities=28%  Similarity=0.395  Sum_probs=48.3

Q ss_pred             CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEE-EEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728          123 LEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMA-SVVYITSEATGLPIDDPDTLAKIKRLLL  194 (450)
Q Consensus       123 ~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~-d~f~V~~~~~g~~i~~~~~~~~l~~~L~  194 (450)
                      .-...|.|.+.||+|+|++|+.+|+..++||.+....+.+++.. -.|.+.-       .+...+.+|-..|.
T Consensus       625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v-------~n~~~L~~i~~~l~  690 (701)
T COG0317         625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV-------KNLNHLGRVLARLK  690 (701)
T ss_pred             ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE-------CcHHHHHHHHHHHh
Confidence            45678899999999999999999999999999999888644433 3333333       23456666666664

>TIGR00657 asp_kinases aspartate kinase

Probab=89.11  E-value=17  Score=38.23  Aligned_cols=108  Identities=20%  Similarity=0.257  Sum_probs=66.0

Q ss_pred             CeEEEEEEcC-CC-cchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCC
Q 044728           35 KATLIKVDSA-NK-RGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRS  112 (450)
Q Consensus        35 ~~~~V~V~~~-Dr-pGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~  112 (450)
                      +...|+|.+. .. +|.++++.+.|.+.|++|.-....+.. .. -.|.|...+-     +...+.|........     
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se-~s-Is~~I~~~~~-----~~a~~~L~~~~~~~~-----  368 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE-TS-ISFTVDKEDA-----DQAKTLLKSELNLSA-----  368 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC-ce-EEEEEEHHHH-----HHHHHHHHHHHHhcC-----
Confidence            3455666542 23 799999999999999999866543332 11 1355433211     112222221111110     


Q ss_pred             cceeeeccCCCceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 044728          113 LRRSVGVQAALEHTTIELTG---RDRPGLLSEVFAVLSDLKCNVMGAE  157 (450)
Q Consensus       113 ~~r~v~~~~~~~~t~i~v~~---~DrpGLl~~i~~~L~~~glnI~~A~  157 (450)
                       ...  .....+...|++.+   .+.||+++++..+|+.+|+||....
T Consensus       369 -~~~--I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       369 -LSS--VEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             -cce--EEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence             001  12455677888865   4789999999999999999997665

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK06545 prephenate dehydrogenase; Validated

Probab=88.93  E-value=1.4  Score=45.04  Aligned_cols=53  Identities=17%  Similarity=0.260  Sum_probs=44.6

Q ss_pred             CCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728          121 AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS  173 (450)
Q Consensus       121 ~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~  173 (450)
                      .-+..+.+.|.-+|+||-+++|+..|...|+||.+.+|....+....++.++-
T Consensus       286 ~~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~  338 (359)
T PRK06545        286 AIPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF  338 (359)
T ss_pred             CCCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence            34578999999999999999999999999999999999776555555665554

>PRK06382 threonine dehydratase; Provisional

Probab=88.66  E-value=2.1  Score=44.65  Aligned_cols=68  Identities=18%  Similarity=0.190  Sum_probs=48.4

Q ss_pred             CCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEe----ec-CceeeeEEEEEeCCCCCCChHHHHHHHHHHhhcc
Q 044728          335 SEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVT----TR-GSQAVNVFYVVDASGNPVKSETIESVRKEIGLTI  407 (450)
Q Consensus       335 ~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~----T~-g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~  407 (450)
                      .+.+.+.|.-+|+||-|.+|++.|.++|+||.+....    .. -+.+.=+|.|...+     ....++|.+.|.+..
T Consensus       328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~-----~~~~~~v~~~L~~~G  400 (406)
T PRK06382        328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG-----QDHLDRILNALREMG  400 (406)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC-----HHHHHHHHHHHHHCC
Confidence            3467999999999999999999999999999877653    11 22344556664431     244457777777643

>PRK12483 threonine dehydratase; Reviewed

Probab=88.63  E-value=16  Score=39.43  Aligned_cols=141  Identities=10%  Similarity=0.109  Sum_probs=87.5

Q ss_pred             ceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHH-HHHHHHHHHH-H-----
Q 044728          258 GYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAER-QRVINCLEAA-I-----  330 (450)
Q Consensus       258 ~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~-~~l~~~L~~~-L-----  330 (450)
                      ....+.|.-+||||-|.+++..|...  ||.+..-......-..+++.....+.     +.. +.|.+.|.+. .     
T Consensus       344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~-----~~~~~~i~~~l~~~g~~~~dl  416 (521)
T PRK12483        344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPR-----HDPRAQLLASLRAQGFPVLDL  416 (521)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCCh-----hhhHHHHHHHHHHCCCCeEEC
Confidence            44578899999999999999999988  88776554432222333433332221     233 6677777532 0     


Q ss_pred             --------------hccCC---CceEEEEeeCCCcchHHHHHHHHHH-CCceEEEEEEeecCceeeeEEEEEeCCCCCCC
Q 044728          331 --------------KRRTS---EGISLELCCEDRAGLLSDVTRIFRE-NGLSVTRAEVTTRGSQAVNVFYVVDASGNPVK  392 (450)
Q Consensus       331 --------------~~r~~---~~t~iev~~~DrpGLL~~It~~l~~-~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~  392 (450)
                                    .++.+   +.-++.+.=+.|||-|.++++.|.. .+|.-.+=+.  .|.....+| |    |-.+.
T Consensus       417 sdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR~--~~~~~a~v~-v----gi~~~  489 (521)
T PRK12483        417 TDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYRN--HGAADGRVL-A----GLQVP  489 (521)
T ss_pred             CCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeecC--CCCCceEEE-E----EEeeC
Confidence                          11222   3458889999999999999999986 3555444433  355555565 3    21122


Q ss_pred             hHHHHHHHHHHhhccccccc
Q 044728          393 SETIESVRKEIGLTILRVKD  412 (450)
Q Consensus       393 ~~~~~~L~~~l~~~~l~~~~  412 (450)
                      +++.+++.+.|.+.-....|
T Consensus       490 ~~~~~~~~~~l~~~gy~~~d  509 (521)
T PRK12483        490 EDERAALDAALAALGYPYWE  509 (521)
T ss_pred             hhHHHHHHHHHHHCCCCeEE
Confidence            35567888888775555433

>PRK06349 homoserine dehydrogenase; Provisional

Probab=88.62  E-value=1.9  Score=45.36  Aligned_cols=65  Identities=22%  Similarity=0.392  Sum_probs=47.1

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      .+.|.+...|+||.|++|+..|.++|++|.+..-....+....++++++..    ++.++++..++|.+
T Consensus       348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~----~e~~l~~~i~~L~~  412 (426)
T PRK06349        348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHET----SEAALRAALAAIEA  412 (426)
T ss_pred             eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeC----CHHHHHHHHHHHhc
Confidence            488999999999999999999999999999886544333455677777643    22344555555543

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=88.54  E-value=1.5  Score=33.30  Aligned_cols=45  Identities=11%  Similarity=0.273  Sum_probs=33.4

Q ss_pred             CceEEEEEEec----CCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEe
Q 044728          257 KGYTVVNLRCP----DRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIR  306 (450)
Q Consensus       257 ~~~t~v~V~~~----DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~  306 (450)
                      .+...|.|.++    |.||+.++++..|++.|++|....     .+.-+.|.|.
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is-----S~~~~~ilV~   52 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS-----SEISISILVK   52 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE-----ESSEEEEEEE
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE-----EeeeEEEEEe
Confidence            34567888887    799999999999999999998665     2333445555

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=88.54  E-value=1.5  Score=39.53  Aligned_cols=37  Identities=19%  Similarity=0.112  Sum_probs=33.7

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCC
Q 044728           38 LIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGE   74 (450)
Q Consensus        38 ~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g   74 (450)
                      -+.|.+.|+||.|.++++++++.|.||..|+.+. .+|
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g   41 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDG   41 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccC
Confidence            4788899999999999999999999999999986 555

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=87.69  E-value=2.6  Score=46.65  Aligned_cols=74  Identities=18%  Similarity=0.136  Sum_probs=50.6

Q ss_pred             EEEEecc-CCceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEE-EEEEecCCCCCCCcHHHHHHHHHHH
Q 044728          249 VTVESCT-DKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQ-EYYIRHVDGNPISSEAERQRVINCL  326 (450)
Q Consensus       249 V~v~~~~-~~~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d-~F~V~~~~g~~~~~~~~~~~l~~~L  326 (450)
                      |.|.... ..-...|.|.+.||+|+|++++.+|+..+.||......+.++.+.. .|.+.-      .+-..+..+...|
T Consensus       616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v------~n~~~L~~i~~~l  689 (701)
T COG0317         616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV------KNLNHLGRVLARL  689 (701)
T ss_pred             EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE------CcHHHHHHHHHHH
Confidence            3555543 3345689999999999999999999999999999988876443333 333331      1223556666555


Q ss_pred             HH
Q 044728          327 EA  328 (450)
Q Consensus       327 ~~  328 (450)
                      .+
T Consensus       690 ~~  691 (701)
T COG0317         690 KQ  691 (701)
T ss_pred             hc
Confidence            43

>PLN02551 aspartokinase

Probab=87.66  E-value=22  Score=38.44  Aligned_cols=113  Identities=16%  Similarity=0.178  Sum_probs=67.6

Q ss_pred             CeEEEEEEcC---CCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCC
Q 044728           35 KATLIKVDSA---NKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFR  111 (450)
Q Consensus        35 ~~~~V~V~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~  111 (450)
                      +.+.|+|.+.   +.+|.++++...|.+.|++|.-.  .+.. .. -+|.|...+-.  ..+.+.+.+++.+.+...   
T Consensus       365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe-~s-Is~~v~~~~~~--~~~~i~~~l~~l~~el~~---  435 (521)
T PLN02551        365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE-VS-ISLTLDPSKLW--SRELIQQELDHLVEELEK---  435 (521)
T ss_pred             CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC-CE-EEEEEehhHhh--hhhhHHHHHHHHHHHhhc---
Confidence            4467777654   68999999999999999999855  2322 11 13555332211  001011112221111110   


Q ss_pred             CcceeeeccCCCceEEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728          112 SLRRSVGVQAALEHTTIELTGR--DRPGLLSEVFAVLSDLKCNVMGAEVWT  160 (450)
Q Consensus       112 ~~~r~v~~~~~~~~t~i~v~~~--DrpGLl~~i~~~L~~~glnI~~A~i~t  160 (450)
                        ...+  ....+...|.|+|.  ..||+++++..+|+..|+||......+
T Consensus       436 --~~~V--~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga  482 (521)
T PLN02551        436 --IAVV--NLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA  482 (521)
T ss_pred             --CCeE--EEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence              0011  23456777888764  688999999999999999998665433

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=87.62  E-value=13  Score=42.36  Aligned_cols=114  Identities=13%  Similarity=0.264  Sum_probs=72.5

Q ss_pred             CCeEEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCC
Q 044728           34 RKATLIKVDS---ANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSF  110 (450)
Q Consensus        34 ~~~~~V~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~  110 (450)
                      ++.+.|+|.+   +++||.++++..+|.+.|++|.-....+.. ..+ +|.|...+.     +...+.|++.+...... 
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe-~sI-sf~V~~~d~-----~~av~~L~~~f~~el~~-  384 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE-YSI-SFCVPQSDA-----AKAKRALEEEFALELKE-  384 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC-ceE-EEEEeHHHH-----HHHHHHHHHHHHHHhcc-
Confidence            3556788865   478999999999999999999755544322 222 355543221     22334444444211100 


Q ss_pred             CCcceeeeccCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEE
Q 044728          111 RSLRRSVGVQAALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNVMGAEV  158 (450)
Q Consensus       111 ~~~~r~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI~~A~i  158 (450)
                       .....  .....+...|.+.+.   ++||+++++..+|.+.|+||....-
T Consensus       385 -~~~~~--i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isq  432 (819)
T PRK09436        385 -GLLEP--LEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQ  432 (819)
T ss_pred             -CCcce--EEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEe
Confidence             00001  123456788888885   7899999999999999999986543

>TIGR00657 asp_kinases aspartate kinase

Probab=87.54  E-value=15  Score=38.60  Aligned_cols=101  Identities=12%  Similarity=0.156  Sum_probs=65.1

Q ss_pred             ceEEEEEEecC-C-cChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc-C
Q 044728          258 GYTVVNLRCPD-R-PKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR-T  334 (450)
Q Consensus       258 ~~t~v~V~~~D-r-pGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r-~  334 (450)
                      +...|.|.+.+ . ||.++++..+|+++|++|......+. + .--.|.|...         ..++..+.|....... .
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~s-e-~sIs~~I~~~---------~~~~a~~~L~~~~~~~~~  369 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSS-E-TSISFTVDKE---------DADQAKTLLKSELNLSAL  369 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC-C-ceEEEEEEHH---------HHHHHHHHHHHHHHhcCc
Confidence            45567777644 3 79999999999999999986642222 2 1123555421         2222233333221111 1


Q ss_pred             ------CCceEEEEeeC---CCcchHHHHHHHHHHCCceEEEEE
Q 044728          335 ------SEGISLELCCE---DRAGLLSDVTRIFRENGLSVTRAE  369 (450)
Q Consensus       335 ------~~~t~iev~~~---DrpGLL~~It~~l~~~gi~I~~Ak  369 (450)
                            .....+.+.+.   ++||++++|.+.|++.||||....
T Consensus       370 ~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       370 SSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             ceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence                  23467888654   789999999999999999998775

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=87.25  E-value=4.9  Score=32.01  Aligned_cols=66  Identities=14%  Similarity=0.182  Sum_probs=40.5

Q ss_pred             EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEe-ecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhccccc
Q 044728          339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVT-TRGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTILRV  410 (450)
Q Consensus       339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~-T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l~~  410 (450)
                      ++.|.-+||||=|++++++|+..+|+  ...-. ...+.+.-.+-+...+|    .++.+++.+.|.+.....
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~~anI~--~~~y~~~~~~~~~v~i~ie~~~~----~~~~~~i~~~L~~~G~~~   69 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIGPRNIT--EFNYRYADEKDAHIFVGVSVANG----AEELAELLEDLKSAGYEV   69 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhCCCcee--EEEEEccCCCeeEEEEEEEeCCc----HHHHHHHHHHHHHCCCCe
Confidence            57888999999999999999955544  32222 11233333333433311    256678888888755544

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09181 aspartate kinase; Validated

Probab=87.14  E-value=8.5  Score=41.07  Aligned_cols=101  Identities=13%  Similarity=0.118  Sum_probs=68.7

Q ss_pred             ceEEEEEEec---CCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc-c
Q 044728          258 GYTVVNLRCP---DRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR-R  333 (450)
Q Consensus       258 ~~t~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~-r  333 (450)
                      +.+.|+|.+.   +.||+.+++...|+++|++|.  -+.+..  .--+|.|.+.    .   ...+++.+.|.+.+.. .
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~----~---~~~~~~~~~L~~~~~~~~  396 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS----L---KTLKRVIAELEKRYPNAE  396 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC----h---HHHHHHHHHHHHhcCCce
Confidence            5667777544   689999999999999999998  233322  2234566432    0   1334455555543321 1


Q ss_pred             --CCCceEEEEeeCC--CcchHHHHHHHHHHCCceEEEEE
Q 044728          334 --TSEGISLELCCED--RAGLLSDVTRIFRENGLSVTRAE  369 (450)
Q Consensus       334 --~~~~t~iev~~~D--rpGLL~~It~~l~~~gi~I~~Ak  369 (450)
                        ...-.+|.|.+..  +||+.+++.++|++.||||....
T Consensus       397 i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~  436 (475)
T PRK09181        397 VTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH  436 (475)
T ss_pred             EEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE
Confidence              2345678888765  89999999999999999998755

>PRK09084 aspartate kinase III; Validated

Probab=86.92  E-value=27  Score=36.93  Aligned_cols=103  Identities=17%  Similarity=0.242  Sum_probs=63.0

Q ss_pred             CeEEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCC
Q 044728           35 KATLIKVDS---ANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFR  111 (450)
Q Consensus        35 ~~~~V~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~  111 (450)
                      +...|+|.+   .+.+|.++++...|.+.|++|.-..  +.. . --+|.|...+-..-......+++.+.|....    
T Consensus       305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse-~-sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~----  376 (448)
T PRK09084        305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TSE-V-SVSLTLDTTGSTSTGDTLLTQALLTELSQLC----  376 (448)
T ss_pred             CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--ccC-c-EEEEEEechhhhhhhhHHHHHHHHHHHhcCC----
Confidence            456777765   4789999999999999999998554  221 1 1235554322110000112233433343211    


Q ss_pred             CcceeeeccCCCceEEEEEEeC---CCcchHHHHHHHHHhCCc
Q 044728          112 SLRRSVGVQAALEHTTIELTGR---DRPGLLSEVFAVLSDLKC  151 (450)
Q Consensus       112 ~~~r~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~gl  151 (450)
                          .+  .-..+...|.+.|.   ++||+++++..+|...++
T Consensus       377 ----~i--~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI  413 (448)
T PRK09084        377 ----RV--EVEEGLALVALIGNNLSKACGVAKRVFGVLEPFNI  413 (448)
T ss_pred             ----eE--EEECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence                11  23556788888885   789999999999987543

>PRK12483 threonine dehydratase; Reviewed

Probab=86.63  E-value=19  Score=38.90  Aligned_cols=116  Identities=17%  Similarity=0.180  Sum_probs=72.4

Q ss_pred             CeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCcc----C
Q 044728           35 KATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRAR----S  109 (450)
Q Consensus        35 ~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~----~  109 (450)
                      ....+.|..|||||-|.+++.+|...  ||.+..-.. ..+.+ ..++..+-.+.    ++..+.|.+.|.+..-    +
T Consensus       344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~-~v~v~ie~~~~----~~~~~~i~~~l~~~g~~~~dl  416 (521)
T PRK12483        344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREA-HLFVGVQTHPR----HDPRAQLLASLRAQGFPVLDL  416 (521)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCee-EEEEEEEeCCh----hhhHHHHHHHHHHCCCCeEEC
Confidence            45788999999999999999999988  888766654 33333 23433333222    2233677777765441    0


Q ss_pred             CC-----Ccce-eeec-c-CCCceEEEEEEeCCCcchHHHHHHHHHh-CCceEEEEE
Q 044728          110 FR-----SLRR-SVGV-Q-AALEHTTIELTGRDRPGLLSEVFAVLSD-LKCNVMGAE  157 (450)
Q Consensus       110 ~~-----~~~r-~v~~-~-~~~~~t~i~v~~~DrpGLl~~i~~~L~~-~glnI~~A~  157 (450)
                      ..     ..-| -|.- . ....--.+.|.-|.|||-|.+++..|.. .+++-.+=+
T Consensus       417 sdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR  473 (521)
T PRK12483        417 TDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYR  473 (521)
T ss_pred             CCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeec
Confidence            00     0000 0111 1 1234567788889999999999999997 366554433

>PLN02317 arogenate dehydratase

Probab=86.52  E-value=3  Score=43.04  Aligned_cols=67  Identities=15%  Similarity=0.206  Sum_probs=47.0

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCce---------------eeeEEEEEeCCCCCCChHHHHHHHH
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQ---------------AVNVFYVVDASGNPVKSETIESVRK  401 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~---------------a~D~F~v~~~~g~~l~~~~~~~L~~  401 (450)
                      .|.|-+.-.|+||.|+++-.+|+.+|||+..........+               -+-.|||.-. |..- +...+..-+
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~e-g~~~-d~~~~~aL~  360 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFE-ASMA-DPRAQNALA  360 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEE-cCcC-CHHHHHHHH
Confidence            3667777789999999999999999999999987765443               4569999544 5432 333333334


Q ss_pred             HHhh
Q 044728          402 EIGL  405 (450)
Q Consensus       402 ~l~~  405 (450)
                      .|.+
T Consensus       361 ~L~~  364 (382)
T PLN02317        361 HLQE  364 (382)
T ss_pred             HHHH
Confidence            4443

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=86.44  E-value=11  Score=42.92  Aligned_cols=102  Identities=9%  Similarity=0.128  Sum_probs=68.8

Q ss_pred             CceEEEEEEec---CCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHH---
Q 044728          257 KGYTVVNLRCP---DRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAI---  330 (450)
Q Consensus       257 ~~~t~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L---  330 (450)
                      .+.+.|.|.+.   .+||+++++..+|+++|++|......+. + .--+|.|...         ..++..+.|.+.+   
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssS-e-~sIsf~V~~~---------d~~~av~~L~~~f~~e  381 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSS-E-YSISFCVPQS---------DAAKAKRALEEEFALE  381 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCC-C-ceEEEEEeHH---------HHHHHHHHHHHHHHHH
Confidence            46678888765   6899999999999999999975543322 2 2224555531         2233333343332   


Q ss_pred             -hc-cC------CCceEEEEeeC---CCcchHHHHHHHHHHCCceEEEEE
Q 044728          331 -KR-RT------SEGISLELCCE---DRAGLLSDVTRIFRENGLSVTRAE  369 (450)
Q Consensus       331 -~~-r~------~~~t~iev~~~---DrpGLL~~It~~l~~~gi~I~~Ak  369 (450)
                       .. ..      ..-.+|.|.+.   ++||++.++..+|.+.||||....
T Consensus       382 l~~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        382 LKEGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             hccCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence             21 11      23467888886   789999999999999999998654

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=86.34  E-value=6.1  Score=30.84  Aligned_cols=61  Identities=16%  Similarity=0.216  Sum_probs=39.4

Q ss_pred             EEEEe---eCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHH-HHHHHHhh
Q 044728          339 SLELC---CEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIE-SVRKEIGL  405 (450)
Q Consensus       339 ~iev~---~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~-~L~~~l~~  405 (450)
                      .|+|.   ..++||++++|...|+++||+|....  | ++ ..=.|-|...  .+..++.+. +|.++|..
T Consensus         3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~~--d~~~~~~~~~~l~~~l~~   67 (75)
T cd04932           3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDNT--GSTSDQLLTQALLKELSQ   67 (75)
T ss_pred             EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEecc--ccchhHHHHHHHHHHHHh
Confidence            45552   46889999999999999999999874  3 33 3334555432  222223333 66666665

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=86.27  E-value=5.3  Score=31.20  Aligned_cols=47  Identities=13%  Similarity=0.260  Sum_probs=36.9

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEee
Q 044728          127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-SRMASVVYITS  173 (450)
Q Consensus       127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~f~V~~  173 (450)
                      .+.+..+|+||-|+++-..|+.+|+|+..-...... ....=.|+|.-
T Consensus         2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~   49 (74)
T cd04929           2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC   49 (74)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence            345556899999999999999999999988877643 33555777765

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PLN02551 aspartokinase

Probab=85.79  E-value=34  Score=37.04  Aligned_cols=105  Identities=14%  Similarity=0.168  Sum_probs=66.7

Q ss_pred             CceEEEEEEec---CCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHH---HH
Q 044728          257 KGYTVVNLRCP---DRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEA---AI  330 (450)
Q Consensus       257 ~~~t~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~---~L  330 (450)
                      .+.+.|+|.+.   +.||.++++...|+++|++|.--  .+. + .--+|.+...+-.      ..+.+++.+.+   .|
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssS-e-~sIs~~v~~~~~~------~~~~i~~~l~~l~~el  433 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATS-E-VSISLTLDPSKLW------SRELIQQELDHLVEEL  433 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--ecc-C-CEEEEEEehhHhh------hhhhHHHHHHHHHHHh
Confidence            35567888655   68999999999999999999866  222 2 2224566532211      11122222221   22


Q ss_pred             hc--cC---CCceEEEEeeC--CCcchHHHHHHHHHHCCceEEEEEEe
Q 044728          331 KR--RT---SEGISLELCCE--DRAGLLSDVTRIFRENGLSVTRAEVT  371 (450)
Q Consensus       331 ~~--r~---~~~t~iev~~~--DrpGLL~~It~~l~~~gi~I~~AkI~  371 (450)
                      .+  +.   ....+|.|.+.  .+||+++++.++|++.||||......
T Consensus       434 ~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqg  481 (521)
T PLN02551        434 EKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQG  481 (521)
T ss_pred             hcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEec
Confidence            21  11   23456666654  68999999999999999999876633

>PRK14646 hypothetical protein; Provisional

Probab=85.63  E-value=10  Score=34.09  Aligned_cols=92  Identities=12%  Similarity=0.097  Sum_probs=61.8

Q ss_pred             ChHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc--cCCCceEEEEeeCCC
Q 044728          271 KLLFDAVCTLTDMQYVVYHATVIAESP-EAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR--RTSEGISLELCCEDR  347 (450)
Q Consensus       271 GLl~~i~~~L~~~glnI~~A~I~t~~g-~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~--r~~~~t~iev~~~Dr  347 (450)
                      .+...+..++..+|+.+.+..+...++ +++ .++|..++|..+.- +.++.+-+.+.+.|..  ..+..|.+||+++.=
T Consensus         8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~L-rV~IDk~~g~gVtl-dDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGl   85 (155)
T PRK14646          8 KLEILLEKVANEFDLKICSLNIQTNQNPIVI-KIIIKKTNGDDISL-DDCALFNTPASEEIENSNLLNCSYVLEISSQGV   85 (155)
T ss_pred             HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEE-EEEEECCCCCCccH-HHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCC
Confidence            456678888999999999999998765 555 44554444433433 3788898999888863  356789999998733


Q ss_pred             cchHHHHHHHHHHCCce
Q 044728          348 AGLLSDVTRIFRENGLS  364 (450)
Q Consensus       348 pGLL~~It~~l~~~gi~  364 (450)
                      ---|..--.+-.-.|=.
T Consensus        86 dRpL~~~~df~r~~G~~  102 (155)
T PRK14646         86 SDELTSERDFKTFKGFP  102 (155)
T ss_pred             CCcCCCHHHHHHhCCCE
Confidence            33344444444444433

>PRK14630 hypothetical protein; Provisional

Probab=85.54  E-value=7.3  Score=34.56  Aligned_cols=77  Identities=8%  Similarity=0.037  Sum_probs=56.3

Q ss_pred             CCcChHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhccCCCceEEEEeeC-
Q 044728          268 DRPKLLFDAVCTLTDMQYVVYHATVIAESP-EAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCE-  345 (450)
Q Consensus       268 DrpGLl~~i~~~L~~~glnI~~A~I~t~~g-~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r~~~~t~iev~~~-  345 (450)
                      |.-.+-..+..++..+|+.+.+......++ ..+ .+++....|-.+   +.++.+-+.+...|....+..|.+||+++ 
T Consensus         6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~l-rV~Id~~~gV~i---dDC~~vSr~i~~~ld~~i~~~Y~LEVSSPG   81 (143)
T PRK14630          6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKI-QIVLYKKDSFGV---DTLCDLHKMILLILEAVLKYNFSLEISTPG   81 (143)
T ss_pred             cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEE-EEEEECCCCCCH---HHHHHHHHHHHHHhcccCCCCeEEEEeCCC
Confidence            445566778889999999999999877654 554 445544445333   37888888887777655577899999987 


Q ss_pred             -CCc
Q 044728          346 -DRA  348 (450)
Q Consensus       346 -Drp  348 (450)
                       |||
T Consensus        82 ldRp   85 (143)
T PRK14630         82 INRK   85 (143)
T ss_pred             CCCc
Confidence             666

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=85.45  E-value=1.6  Score=41.90  Aligned_cols=46  Identities=15%  Similarity=0.172  Sum_probs=36.9

Q ss_pred             EEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEE--EEEEe
Q 044728          261 VVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQ--EYYIR  306 (450)
Q Consensus       261 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d--~F~V~  306 (450)
                      .|.+...|.||++.+|+++|+..|+||.+.-+--....++.  +..++
T Consensus        79 vinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~  126 (309)
T KOG2663|consen   79 VINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQ  126 (309)
T ss_pred             eEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEe
Confidence            58899999999999999999999999999877655444444  44454

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=85.03  E-value=15  Score=37.81  Aligned_cols=65  Identities=17%  Similarity=0.265  Sum_probs=45.3

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe---e--CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728          124 EHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT---H--NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLY  195 (450)
Q Consensus       124 ~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t---~--~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (450)
                      ....+.|.-+|+||.|++++..++++|.||.+..-..   .  .+.+.-.+.+...       +++..+.|.+.|++
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-------~~~~~~~i~~~L~~  373 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-------GKEHLDEILKILRD  373 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            3558899999999999999999999999999885442   1  2344444555441       23455666666653

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=84.56  E-value=3.9  Score=36.95  Aligned_cols=67  Identities=22%  Similarity=0.350  Sum_probs=46.8

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728          125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK  198 (450)
Q Consensus       125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~  198 (450)
                      ...+.+.-.|.||.|+++++.|+..|.||.+-.+.-. .....-+-.|..   |    ++...+++...|.++..
T Consensus         4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g----~~~~~EQi~kQL~kLid   71 (163)
T COG0440           4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---G----DEQVLEQIIKQLNKLID   71 (163)
T ss_pred             eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---C----CcchHHHHHHHHHhhcc
Confidence            4567888899999999999999999999999888643 222333333333   2    23456777777776554

>PRK14636 hypothetical protein; Provisional

Probab=84.48  E-value=9.1  Score=35.20  Aligned_cols=80  Identities=9%  Similarity=0.052  Sum_probs=56.6

Q ss_pred             CcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc--cCCCceEEEEeeC-
Q 044728          269 RPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR--RTSEGISLELCCE-  345 (450)
Q Consensus       269 rpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~--r~~~~t~iev~~~-  345 (450)
                      .+-+...+..++..+|+.+.+..+...++..+-.++|..+++..+.- +.++.+-+.|...|..  ..+..|.+||+++ 
T Consensus         4 ~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~l-DDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSPG   82 (176)
T PRK14636          4 IAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVI-EDCAALSRRLSDVFDELDPIEDAYRLEVSSPG   82 (176)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCH-HHHHHHHHHHHHHhccCcCCCCCeEEEEeCCC
Confidence            34566778888999999999999888765433344554443333433 3788999999888863  2467899999987 


Q ss_pred             -CCcc
Q 044728          346 -DRAG  349 (450)
Q Consensus       346 -DrpG  349 (450)
                       |||=
T Consensus        83 ldRpL   87 (176)
T PRK14636         83 IDRPL   87 (176)
T ss_pred             CCCCC
Confidence             6663

>PRK14634 hypothetical protein; Provisional

Probab=84.47  E-value=12  Score=33.67  Aligned_cols=77  Identities=18%  Similarity=0.206  Sum_probs=56.2

Q ss_pred             cChHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc--CCCceEEEEeeC-
Q 044728          270 PKLLFDAVCTLTDMQYVVYHATVIAESP-EAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR--TSEGISLELCCE-  345 (450)
Q Consensus       270 pGLl~~i~~~L~~~glnI~~A~I~t~~g-~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r--~~~~t~iev~~~-  345 (450)
                      +.+..-+..++..+|+.+.+..+...++ +++ ..+|..+.|..++- +.++.+-+.+...|...  .+..|.+||+++ 
T Consensus         7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~l-rV~ID~~~g~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG   84 (155)
T PRK14634          7 PDLETLASATAADKGFELCGIQVLTHLQPMTL-QVQIRRSSGSDVSL-DDCAGFSGPMGEALEASQLLTEAYVLEISSPG   84 (155)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEE-EEEEECCCCCcccH-HHHHHHHHHHHHHhcccccCCCCeEEEEeCCC
Confidence            4566677788999999999999988754 555 45555455643433 37889999998888642  467899999987 


Q ss_pred             -CCc
Q 044728          346 -DRA  348 (450)
Q Consensus       346 -Drp  348 (450)
                       |||
T Consensus        85 ldRp   88 (155)
T PRK14634         85 IGDQ   88 (155)
T ss_pred             CCCc
Confidence             666

>PRK08198 threonine dehydratase; Provisional

Probab=84.38  E-value=7.3  Score=40.47  Aligned_cols=39  Identities=23%  Similarity=0.394  Sum_probs=34.4

Q ss_pred             CCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728          122 ALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT  160 (450)
Q Consensus       122 ~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t  160 (450)
                      ......+.|.-+|+||-|+++...++++|.||.+.....
T Consensus       324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~  362 (404)
T PRK08198        324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR  362 (404)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence            445678999999999999999999999999999887653

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=84.18  E-value=3  Score=35.62  Aligned_cols=49  Identities=12%  Similarity=0.156  Sum_probs=38.9

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCe-EEEEEEEee
Q 044728          125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSR-MASVVYITS  173 (450)
Q Consensus       125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~-~~d~f~V~~  173 (450)
                      .+.+.+..+|+||-|+++-..|+.+|+|+..-......+. ..=.|+|.-
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi   90 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC   90 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence            5677777799999999999999999999998887765433 344666664

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=84.11  E-value=3.3  Score=37.41  Aligned_cols=63  Identities=25%  Similarity=0.386  Sum_probs=43.4

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEe-ecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVT-TRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~-T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      .++.+.-.|.||.|..++..|++.|+||++..+. |.-.....+=.+...+     +...+++.+.|..
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~-----~~~~EQi~kQL~k   68 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGD-----EQVLEQIIKQLNK   68 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCC-----cchHHHHHHHHHh
Confidence            4677888999999999999999999999998875 3333333222233222     2345666666665

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=84.03  E-value=6.2  Score=40.61  Aligned_cols=68  Identities=13%  Similarity=0.135  Sum_probs=47.8

Q ss_pred             CceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEe----e-cCceeeeEEEEEeCCCCCCChHHHHHHHHHHhhccc
Q 044728          336 EGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVT----T-RGSQAVNVFYVVDASGNPVKSETIESVRKEIGLTIL  408 (450)
Q Consensus       336 ~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~----T-~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~~~l  408 (450)
                      +...+.|.-+||||.|.+|++.+++.|.||....-.    + .-+.+.=.+.+....     .+..++|.+.|.+...
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~-----~~~~~~i~~~L~~~G~  376 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG-----KEHLDEILKILRDMGY  376 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC-----HHHHHHHHHHHHHcCC
Confidence            446899999999999999999999999999887533    1 123444444443331     3556788888876443

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=83.87  E-value=6.3  Score=30.72  Aligned_cols=56  Identities=18%  Similarity=0.318  Sum_probs=37.3

Q ss_pred             CCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          345 EDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       345 ~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      .+.||++++|.++|+++||||...-  + ++ ..=.|-|.... ..+.++..++|.++|..
T Consensus        12 ~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~~-~~~~~~~~~~l~~el~~   67 (75)
T cd04935          12 WQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPDP-NGLDPDVLDALLDDLNQ   67 (75)
T ss_pred             CCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCcc-cccchHHHHHHHHHHHh
Confidence            4789999999999999999999874  2 33 22344443332 11333456677777765

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=83.80  E-value=2.8  Score=40.39  Aligned_cols=38  Identities=24%  Similarity=0.317  Sum_probs=33.5

Q ss_pred             CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728          123 LEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT  160 (450)
Q Consensus       123 ~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t  160 (450)
                      ....+|.+...|.||.+++|+++|+..|.||.+--+--
T Consensus        75 ~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~  112 (309)
T KOG2663|consen   75 VKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL  112 (309)
T ss_pred             ccceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence            34677888889999999999999999999999987754

>PRK08818 prephenate dehydrogenase; Provisional

Probab=83.47  E-value=2.6  Score=43.39  Aligned_cols=49  Identities=20%  Similarity=0.150  Sum_probs=38.2

Q ss_pred             ceEEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728          124 EHTTIELTGR-DRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS  173 (450)
Q Consensus       124 ~~t~i~v~~~-DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~  173 (450)
                      ..+.+.+.-+ |+||.|++++..|+.+|+||.+-++.-.. ...-.|++.=
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r-~~~y~f~i~~  343 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTP-AGELHFRIGF  343 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEeccc-CceEEEEEEE
Confidence            5777888886 99999999999999999999999993222 2222377665

>PRK06349 homoserine dehydrogenase; Provisional

Probab=83.05  E-value=4.8  Score=42.28  Aligned_cols=54  Identities=17%  Similarity=0.231  Sum_probs=41.9

Q ss_pred             cCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728          120 QAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS  173 (450)
Q Consensus       120 ~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~  173 (450)
                      +.....+.|.+...|+||.|++|+++|.++|+||.+.......+....++.++.
T Consensus       343 ~~~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~  396 (426)
T PRK06349        343 EEIESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH  396 (426)
T ss_pred             HHhceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence            344557889999999999999999999999999998765543334455566666

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=82.97  E-value=5.8  Score=39.13  Aligned_cols=50  Identities=18%  Similarity=0.278  Sum_probs=41.5

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCe-EEEEEEEee
Q 044728          124 EHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSR-MASVVYITS  173 (450)
Q Consensus       124 ~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~-~~d~f~V~~  173 (450)
                      ..|.|-+..+|+||.|+++-++|+.+|+|...-......+. ..=.|+|.-
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~  243 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI  243 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE
Confidence            58888888899999999999999999999998887765544 455777765

>PRK11899 prephenate dehydratase; Provisional

Probab=82.82  E-value=7.5  Score=38.47  Aligned_cols=49  Identities=18%  Similarity=0.192  Sum_probs=40.7

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCe-EEEEEEEee
Q 044728          125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSR-MASVVYITS  173 (450)
Q Consensus       125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~-~~d~f~V~~  173 (450)
                      .|.+.+..+|+||.|+++-.+|+.+|+|+.+-......+. ..=.|++.-
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~  243 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI  243 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence            5777778899999999999999999999998888765444 555788876

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=82.28  E-value=3.2  Score=44.86  Aligned_cols=61  Identities=28%  Similarity=0.521  Sum_probs=43.8

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEee--cCceeeeEEEEEeCCCCCCChHHHHHHHH
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTT--RGSQAVNVFYVVDASGNPVKSETIESVRK  401 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T--~g~~a~D~F~v~~~~g~~l~~~~~~~L~~  401 (450)
                      .+.+=+.-.|+||.+..|+..|.+++|||...++.-  .|+.+.-+|.+    ..+++++.+++|++
T Consensus       452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~----D~~v~~~~l~~i~~  514 (526)
T PRK13581        452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV----DDPVPEEVLEELRA  514 (526)
T ss_pred             ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC----CCCCCHHHHHHHhc
Confidence            456666779999999999999999999999988764  34555555544    33455555555553

>PRK14645 hypothetical protein; Provisional

Probab=82.03  E-value=16  Score=32.90  Aligned_cols=90  Identities=23%  Similarity=0.249  Sum_probs=61.4

Q ss_pred             CcChHHHHHHHHHhCCceEEEEEEEecCC-eEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcc--CCCceEEEEeeC
Q 044728          269 RPKLLFDAVCTLTDMQYVVYHATVIAESP-EAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRR--TSEGISLELCCE  345 (450)
Q Consensus       269 rpGLl~~i~~~L~~~glnI~~A~I~t~~g-~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r--~~~~t~iev~~~  345 (450)
                      ...+-..+..++..+|+.+.+..+...++ .++- ++|...+|..+.- +.++.+-+.+...|...  .+..|.|||+++
T Consensus         8 ~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilr-V~ID~~~~~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSP   85 (154)
T PRK14645          8 NPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVL-VRIDRKDEQPVTV-EDLERASRALEAELDRLDPIEGEYRLEVESP   85 (154)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEE-EEEECCCCCCcCH-HHHHHHHHHHHHHhcccccCCCceEEEEeCC
Confidence            34566778889999999999999987764 5554 4444333433433 37888999998888643  467899999987


Q ss_pred             --CCcchHHHHHHHHHHCC
Q 044728          346 --DRAGLLSDVTRIFRENG  362 (450)
Q Consensus       346 --DrpGLL~~It~~l~~~g  362 (450)
                        |||  |...-.+-.-.|
T Consensus        86 GldRp--L~~~~df~r~~G  102 (154)
T PRK14645         86 GPKRP--LFTARHFERFAG  102 (154)
T ss_pred             CCCCC--CCCHHHHHHhCC
Confidence              555  444444444444

>PRK08198 threonine dehydratase; Provisional

Probab=81.93  E-value=9.1  Score=39.77  Aligned_cols=66  Identities=14%  Similarity=0.173  Sum_probs=45.5

Q ss_pred             CeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-----cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcC
Q 044728           35 KATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-----DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPR  106 (450)
Q Consensus        35 ~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-----~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~  106 (450)
                      ....+.|..+|+||-|+++...+.+.|.||.+....-     ..+.+--.+.| +-.+     ++..+.|.+.|.+.
T Consensus       326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~i-e~~~-----~~~~~~l~~~L~~~  396 (404)
T PRK08198        326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTL-ETRG-----PEHIEEILDALRDA  396 (404)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEE-EeCC-----HHHHHHHHHHHHHC
Confidence            3468999999999999999999999999999988752     22443322332 3221     33455666666543

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=81.33  E-value=3.7  Score=44.40  Aligned_cols=54  Identities=22%  Similarity=0.375  Sum_probs=42.7

Q ss_pred             cCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEee
Q 044728          120 QAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITS  173 (450)
Q Consensus       120 ~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~  173 (450)
                      +-.++...+.+...|+||.++.++..|.++|+||...++...  ++.+..++.+..
T Consensus       447 ~~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~  502 (526)
T PRK13581        447 DAKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDD  502 (526)
T ss_pred             EeeCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCC
Confidence            445566777777899999999999999999999999998763  455666665544

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=81.17  E-value=3  Score=45.04  Aligned_cols=61  Identities=21%  Similarity=0.508  Sum_probs=44.4

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEe--ecCceeeeEEEEEeCCCCCCChHHHHHHHH
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVT--TRGSQAVNVFYVVDASGNPVKSETIESVRK  401 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~--T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~  401 (450)
                      .+.+=+.-.|+||.+..|+..|.+++|||...++.  ..|+++.-++.+    ..+++++.+++|++
T Consensus       451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~----D~~v~~~~l~~i~~  513 (525)
T TIGR01327       451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL----DQPVPDEVLEEIKA  513 (525)
T ss_pred             ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc----CCCCCHHHHHHHhc
Confidence            45566667899999999999999999999988876  345666655555    33555555555553

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK09224 threonine dehydratase; Reviewed

Probab=80.91  E-value=53  Score=35.32  Aligned_cols=137  Identities=12%  Similarity=0.120  Sum_probs=83.6

Q ss_pred             ceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHH------H-
Q 044728          258 GYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAA------I-  330 (450)
Q Consensus       258 ~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~------L-  330 (450)
                      .-..+.|.-|||||-|.+++..|.  +.||...+-.-.+.....+|+.....+.    +...+.|.+.|++.      + 
T Consensus       327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~ls  400 (504)
T PRK09224        327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDLS  400 (504)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEECC
Confidence            345788999999999999999999  6888876544333223334444332221    11266777777542      0 


Q ss_pred             -------------hccCC---CceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChH
Q 044728          331 -------------KRRTS---EGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSE  394 (450)
Q Consensus       331 -------------~~r~~---~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~  394 (450)
                                   .++.+   +.-.+.+.=+.|||-|-++...|. -+-||...+=.-.|...--++ |    |-.+.+.
T Consensus       401 ~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr~~~~~~g~vl-v----gi~~~~~  474 (504)
T PRK09224        401 DDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYRNHGADYGRVL-A----GFQVPDA  474 (504)
T ss_pred             CCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEccCCcccccEE-E----EEecChh
Confidence                         12222   235788999999999999999776 778888888653343222222 2    2111122


Q ss_pred             HHHHHHHHHhhc
Q 044728          395 TIESVRKEIGLT  406 (450)
Q Consensus       395 ~~~~L~~~l~~~  406 (450)
                      +.++|.+.+.+.
T Consensus       475 ~~~~~~~~l~~~  486 (504)
T PRK09224        475 DEPEFEAFLDEL  486 (504)
T ss_pred             hHHHHHHHHHHc
Confidence            456777777653

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=80.13  E-value=54  Score=37.74  Aligned_cols=103  Identities=16%  Similarity=0.200  Sum_probs=64.4

Q ss_pred             CeEEEEEE---cCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCC
Q 044728           35 KATLIKVD---SANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFR  111 (450)
Q Consensus        35 ~~~~V~V~---~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~  111 (450)
                      +.+.|+|.   ..+.+|.++++.+.|.+.|++|.-.  .+.. .. -+|.+.+.+.  ....+.++.+...|....    
T Consensus       321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~sse-~s-is~~i~~~~~--~~~~~~~~~l~~~l~~~~----  390 (861)
T PRK08961        321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSSE-TN-VTVSLDPSEN--LVNTDVLAALSADLSQIC----  390 (861)
T ss_pred             CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcCC-CE-EEEEEccccc--cchHHHHHHHHHHHhhcC----
Confidence            44667774   4578999999999999999999643  3322 11 1344433221  101223444444443211    


Q ss_pred             CcceeeeccCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceE
Q 044728          112 SLRRSVGVQAALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNV  153 (450)
Q Consensus       112 ~~~r~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI  153 (450)
                          .+.  ...+...|.|++.   .+||+.+++..+|++.|+++
T Consensus       391 ----~i~--~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~  429 (861)
T PRK08961        391 ----RVK--IIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL  429 (861)
T ss_pred             ----cEE--EeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence                111  2345688888884   88999999999999977655

>PRK11898 prephenate dehydratase; Provisional

Probab=80.10  E-value=7.4  Score=38.56  Aligned_cols=66  Identities=21%  Similarity=0.259  Sum_probs=45.6

Q ss_pred             eEEEEeeC-CCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          338 ISLELCCE-DRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       338 t~iev~~~-DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      +.|-+.-. |+||-|+++-..|+++|||+......-.. ..-+-.|||.- +|.. ++...+++-+.|.+
T Consensus       197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~-eg~~-~~~~~~~al~~L~~  264 (283)
T PRK11898        197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDV-EGHI-DDVLVAEALKELEA  264 (283)
T ss_pred             EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEE-EccC-CCHHHHHHHHHHHH
Confidence            44555554 46999999999999999999999877543 44677899954 4543 33344444454444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	450
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1u8s_A	192	Glycine cleavage system transcriptional repressor,	6e-05
1u8s_A	192	Glycine cleavage system transcriptional repressor,	6e-04
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 75/468 (16%), Positives = 148/468 (31%), Gaps = 173/468 (36%)

Query: 1   MDCWSSSFAVVDEFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLL--------- 51
            DC       V +  K +L     +  +D+       +I    A      L         
Sbjct: 33  FDCKD-----VQDMPKSILS----KEEIDH-------IIMSKDAVSGTLRLFWTLLSKQE 76

Query: 52  ELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQ-----QSLGP- 105
           E+VQ    ++ ++R  Y     ++ M       +  + ++   + +R +     Q     
Sbjct: 77  EMVQKF--VEEVLRINY-----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129

Query: 106 ---RARSFRSLRRSVGVQAALEHTTIELTGRDRPGLLSE----------VFAVLSD--LK 150
              R + +  LR+      AL     EL  R    +L +             V     ++
Sbjct: 130 NVSRLQPYLKLRQ------ALL----EL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 151 CNVMGAEV-WTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLKGD---RDKRSA 206
           C  M  ++ W +                   + P+T+ ++ + LLY +  +   R   S+
Sbjct: 178 CK-MDFKIFWLNLKN---------------CNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 207 NTAVSVDSTHKE-RRLHQMMYADRDY--------DMNYAESGSA-SGRSKPLVTV--ESC 254
           N  + + S   E RRL       + Y        ++  A++ +A +   K L+T   +  
Sbjct: 222 NIKLRIHSIQAELRRL----LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 255 TD----------------KGYT----------VVNLRCPDRPK---------------LL 273
           TD                   T           ++ R  D P+                +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 274 FDAVCTLTDMQYVVY--HATVIAES-----PEAYQEYYIRHV---DGNPISS-------- 315
            D + T  + ++V      T+I  S     P  Y++ + R         I +        
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 316 ---EAERQRVINCLE--AAIKRRTSE------GISLELC--CEDRAGL 350
              +++   V+N L   + ++++  E       I LEL    E+   L
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 59/445 (13%), Positives = 122/445 (27%), Gaps = 157/445 (35%)

Query: 13  EFEKLVLRMNPPRVTVDNTSNRKATLIKVDSANKRGSLLEL--VQ---VLNDLD-----L 62
            +       +  ++ + +       L+K  S      LL L  VQ     N  +     L
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLK--SKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 63  IIRRAYISSDGEWFMDVFHVT-DQNGNKLSEDDVSERIQQSLGPRARSFRSLRRSVGVQA 121
           +  R    +D        H++ D +   L+ D+V   + + L       + L R    + 
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD---CRPQDLPR----EV 322

Query: 122 ALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASV----------- 168
              +          P  LS +   + D        + W H    ++ ++           
Sbjct: 323 LTTN----------PRRLSIIAESIRDGLAT---WDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 169 ---------------VYITSEA-----TGLPIDDPDTLAK--IKRLLLYVLKGDRDKRSA 206
                           +I +         +   D   +     K  L+       +K+  
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-------EKQPK 422

Query: 207 NTAVSVDSTH--------KERRLHQMM---Y-ADRDYDMNYAESGSASGRSKPLVTVESC 254
            + +S+ S +         E  LH+ +   Y   + +D +            P       
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD--------DLIPP------Y 468

Query: 255 TDKGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVI--AESPEAYQEYY-------- 304
            D  Y              +          ++ +H   I   E    ++  +        
Sbjct: 469 LD-QY-------------FY---------SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 305 -IRHVDGNP--------------------IS-SEAERQRVINCLEAAIKRRTSEGISLEL 342
            IRH D                       I  ++ + +R++N +   + +     I  + 
Sbjct: 506 KIRH-DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564

Query: 343 CCEDRAGLLSDVTRIFRENGLSVTR 367
               R  L+++   IF E    V R
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQVQR 589

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 42.8 bits (100), Expect = 6e-05
 Identities = 17/158 (10%), Positives = 45/158 (28%), Gaps = 3/158 (1%)

Query: 38  LIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSE 97
           +I     ++ G   E+V+++      I  + I+  G+ F  +  ++    N    +    
Sbjct: 8   VITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLP 67

Query: 98  RIQQSLGPRARSFRSLRRSVGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAE 157
            + Q       +          Q       + +   D+ GL  +     +  +  +    
Sbjct: 68  LLGQQHD--LITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLS 125

Query: 158 VWTHNSRMASVVYITSEATG-LPIDDPDTLAKIKRLLL 194
             T +                  +D    L +++    
Sbjct: 126 AQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFD 163

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 12/55 (21%), Positives = 27/55 (49%)

Query: 124 EHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGL 178
           +H  I   G DRPG+ +EV  +++   CN++ + +         ++ I+   + +
Sbjct: 5   QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNI 59

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 9/64 (14%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDT 185
             I + G D+ G+ +++  V+S    N+    +   +  +     +      + + + D 
Sbjct: 6   AGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKD-GIF-TCNLM-----IFVKNTDK 58

Query: 186 LAKI 189
           L  +
Sbjct: 59  LTTL 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	450
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.78
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.73
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.73
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.62
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.8
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.72
2f06_A	144	Conserved hypothetical protein; structural genomic	98.61
2f06_A	144	Conserved hypothetical protein; structural genomic	98.58
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	98.13
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.09
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.04
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.98
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.8
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.61
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.55
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.48
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.41
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.38
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.36
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.35
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.27
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.25
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.19
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.18
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.17
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.13
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.12
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.1
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	96.98
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.94
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	96.78
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.75
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.75
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.73
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.49
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.48
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.31
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	96.13
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.05
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.01
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.84
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.8
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.61
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.43
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.25
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.03
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	94.18
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	92.85
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	92.63
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	91.76
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	91.02
3luy_A	329	Probable chorismate mutase; structural genomics, A	91.0
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	90.65
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	90.45
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	90.4
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	88.91
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	87.65
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	87.33
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	86.87
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	85.89
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	85.29
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	85.23
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	83.23

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.78  E-value=1.2e-18  Score=161.70  Aligned_cols=143  Identities=13%  Similarity=0.109  Sum_probs=113.2

Q ss_pred             ceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc-----
Q 044728          258 GYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR-----  332 (450)
Q Consensus       258 ~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~-----  332 (450)
                      ..++|+|+|+||||||++++++|+++|+||++|++++..|.+.-.|.|..+..   ....+++.|++.|...+.+     
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~---~~~~~~~~l~~~L~~~~~~~~~~~   80 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAK---DGKLIQSALESALPGFQISTRRAS   80 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSS---SSHHHHHHHHHHSTTCEEEEEECC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCc---cchhHHHHHHHHHHHHHHhcCCeE
Confidence            35689999999999999999999999999999999987665444788865421   2223577787777654321     


Q ss_pred             c--------CCCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEEEeCCCCCCChHHHHHHHHH
Q 044728          333 R--------TSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG--SQAVNVFYVVDASGNPVKSETIESVRKE  402 (450)
Q Consensus       333 r--------~~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g--~~a~D~F~v~~~~g~~l~~~~~~~L~~~  402 (450)
                      +        ....++|+|.++|||||+++|+++|+++|+||..++..|.+  +++.++||++...+.+ .+.. ++|+++
T Consensus        81 ~~~~~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~~~-~~l~~~  158 (195)
T 2nyi_A           81 SVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-FPLY-QEVVTA  158 (195)
T ss_dssp             CC----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GGGH-HHHHHH
T ss_pred             EEEeCCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-CCcc-HHHHHH
Confidence            0        11358999999999999999999999999999999999998  8889999998876654 2335 777777


Q ss_pred             Hhh
Q 044728          403 IGL  405 (450)
Q Consensus       403 l~~  405 (450)
                      |..
T Consensus       159 l~~  161 (195)
T 2nyi_A          159 LSR  161 (195)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            763

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.73  E-value=7.2e-17  Score=149.62  Aligned_cols=155  Identities=15%  Similarity=0.191  Sum_probs=113.4

Q ss_pred             CeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCcc---CC
Q 044728           35 KATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRAR---SF  110 (450)
Q Consensus        35 ~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~---~~  110 (450)
                      ..++|+|+|+||||||+.|+++|+++|+||++|++++ .+++++ .|.|..+. .  .....++.|++.|.....   +.
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~~-~--~~~~~~~~l~~~L~~~~~~~~~~   79 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLNA-K--DGKLIQSALESALPGFQISTRRA   79 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEESS-S--SSHHHHHHHHHHSTTCEEEEEEC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEecC-c--cchhHHHHHHHHHHHHHHhcCCe
Confidence            3579999999999999999999999999999999997 555666 77776442 1  223467888888875431   11


Q ss_pred             CCcceeeeccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEeecCCCCCCCCHHHHHH
Q 044728          111 RSLRRSVGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN--SRMASVVYITSEATGLPIDDPDTLAK  188 (450)
Q Consensus       111 ~~~~r~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~--~~~~d~f~V~~~~~g~~i~~~~~~~~  188 (450)
                      ......-. ......++|+|.|+||||+++.|+++|+++|+||.+++.+|.+  .+..+.|++... .+.+  ++.. +.
T Consensus        80 ~~~~~~~~-~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~-~~~~--~~~~-~~  154 (195)
T 2nyi_A           80 SSVAERHV-SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSR-VAFP--FPLY-QE  154 (195)
T ss_dssp             CCC----C-CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEE-EEEE--GGGH-HH
T ss_pred             EEEEeCCc-CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEE-EEcC--CCcc-HH
Confidence            00000001 3445679999999999999999999999999999999999976  556677776652 2221  2335 77


Q ss_pred             HHHHHHHhhh
Q 044728          189 IKRLLLYVLK  198 (450)
Q Consensus       189 l~~~L~~~l~  198 (450)
                      |++.|..+..
T Consensus       155 l~~~l~~~a~  164 (195)
T 2nyi_A          155 VVTALSRVEE  164 (195)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888876554

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.73  E-value=1e-16  Score=148.05  Aligned_cols=139  Identities=16%  Similarity=0.169  Sum_probs=109.9

Q ss_pred             eEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc------
Q 044728          259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR------  332 (450)
Q Consensus       259 ~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~------  332 (450)
                      ..+|+|+|+||||++++++++|+++|+||.++++.+..|.+.-.|.|..+       +..++.|++.|.+....      
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~~~~~~~~~~~   78 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-------PSNITRVETTLPLLGQQHDLITM   78 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-------HHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC-------CCCHHHHHHHHHHHHHhcCCEEE
Confidence            46899999999999999999999999999999999987776668888643       13677888888765421      


Q ss_pred             --cC---C-----CceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCc----eeeeEEEEEeCCCCCCChHHHHH
Q 044728          333 --RT---S-----EGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGS----QAVNVFYVVDASGNPVKSETIES  398 (450)
Q Consensus       333 --r~---~-----~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~----~a~D~F~v~~~~g~~l~~~~~~~  398 (450)
                        +.   +     ..++|+|.++||||++++|+++|+++|+||..++..|.++    +..+.|+++...+.+ .+...++
T Consensus        79 ~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~-~~~~~~~  157 (192)
T 1u8s_A           79 MKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-SGCNLMQ  157 (192)
T ss_dssp             EEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-TTSCHHH
T ss_pred             EEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC-CCCCHHH
Confidence              11   1     2489999999999999999999999999999999999985    689999998876544 2234567


Q ss_pred             HHHHHhh
Q 044728          399 VRKEIGL  405 (450)
Q Consensus       399 L~~~l~~  405 (450)
                      |+++|..
T Consensus       158 l~~~l~~  164 (192)
T 1u8s_A          158 LQEEFDA  164 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777764

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.62  E-value=6e-15  Score=136.15  Aligned_cols=153  Identities=12%  Similarity=0.114  Sum_probs=104.7

Q ss_pred             eEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCc---cCCCC
Q 044728           36 ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRA---RSFRS  112 (450)
Q Consensus        36 ~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~---~~~~~  112 (450)
                      .++|+|+|+||||+++.++++|++.|+||.++++++..|.+.-.|.|..+.       ...+.|++.|....   .+...
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-------~~~~~l~~~L~~~~~~~~~~~~   78 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-------SNITRVETTLPLLGQQHDLITM   78 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-------HHHHHHHHHHHHHHHHHTCEEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-------CCHHHHHHHHHHHHHhcCCEEE
Confidence            478999999999999999999999999999999998665554477775431       23445555543211   01000


Q ss_pred             ccee--eeccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCC----eEEEEEEEeecCCCCCCCCHHHH
Q 044728          113 LRRS--VGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNS----RMASVVYITSEATGLPIDDPDTL  186 (450)
Q Consensus       113 ~~r~--v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~----~~~d~f~V~~~~~g~~i~~~~~~  186 (450)
                      ..+.  -........+.|+|.++||||++++|+++|+++|+||.+++..|.+.    +..+.|++... .+.+  ++...
T Consensus        79 ~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~-~~~~--~~~~~  155 (192)
T 1u8s_A           79 MKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAIS-ARVD--SGCNL  155 (192)
T ss_dssp             EEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEE-EEEC--TTSCH
T ss_pred             EEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEE-EeCC--CCCCH
Confidence            0000  00133456889999999999999999999999999999999999863    46677766552 2211  12235


Q ss_pred             HHHHHHHHHhhh
Q 044728          187 AKIKRLLLYVLK  198 (450)
Q Consensus       187 ~~l~~~L~~~l~  198 (450)
                      +.|++.|..+..
T Consensus       156 ~~l~~~l~~~~~  167 (192)
T 1u8s_A          156 MQLQEEFDALCT  167 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            778888876544

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.80  E-value=1.5e-07  Score=96.35  Aligned_cols=123  Identities=9%  Similarity=-0.008  Sum_probs=90.1

Q ss_pred             ceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHH---Hh---
Q 044728          258 GYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAA---IK---  331 (450)
Q Consensus       258 ~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~---L~---  331 (450)
                      ...+|+|.|+||||+.+.+++.|+++|+||.+.+..+.+|++.-...+.-+.+. .    ..+.|++.|...   +.   
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-~----~~~~l~~~l~~~~~~~~~~~   85 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-A----DGPALRHDVEAAIRKVGLDV   85 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-H----TSHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-C----CHHHHHHHHHHHHHHcCeEE
Confidence            346899999999999999999999999999999999888876555555422110 0    125666666543   21   


Q ss_pred             ------c--cC--CCceEEEEeeCC-CcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEe
Q 044728          332 ------R--RT--SEGISLELCCED-RAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVD  385 (450)
Q Consensus       332 ------~--r~--~~~t~iev~~~D-rpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~  385 (450)
                            .  +.  ..++.+++.+.| +||++.+|+.+|+++|+||...+.-+......--|++..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~  150 (415)
T 3p96_A           86 SIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSV  150 (415)
T ss_dssp             EEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEEC
T ss_pred             EEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeC
Confidence                  0  11  135899999999 999999999999999999999887763333332366643

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.72  E-value=2e-07  Score=95.39  Aligned_cols=151  Identities=15%  Similarity=0.078  Sum_probs=97.6

Q ss_pred             CeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCc---cCCC
Q 044728           35 KATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRA---RSFR  111 (450)
Q Consensus        35 ~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~---~~~~  111 (450)
                      ..+.|+|.|+||||+.+.++++|+++|+||.+.+.++.+|++.=...+.-+++. .+    .+.|++.|....   .+..
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-~~----~~~l~~~l~~~~~~~~~~~   85 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-AD----GPALRHDVEAAIRKVGLDV   85 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-HT----SHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-CC----HHHHHHHHHHHHHHcCeEE
Confidence            357899999999999999999999999999999999877766433333222211 11    134444442211   1100


Q ss_pred             Cccee--eeccCCCceEEEEEEeCC-CcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHH
Q 044728          112 SLRRS--VGVQAALEHTTIELTGRD-RPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAK  188 (450)
Q Consensus       112 ~~~r~--v~~~~~~~~t~i~v~~~D-rpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~  188 (450)
                      .....  -.......+..+++.+.| ++|++.+|+.+++++|+||.+.+..+......--|.+..+    + .+   .+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~----~-~~---~~~  157 (415)
T 3p96_A           86 SIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVP----P-GA---DEA  157 (415)
T ss_dssp             EEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECC----T-TC---HHH
T ss_pred             EEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCC----C-CC---HHH
Confidence            00000  000134568899999999 9999999999999999999998887743334344666542    1 12   345


Q ss_pred             HHHHHHHhhh
Q 044728          189 IKRLLLYVLK  198 (450)
Q Consensus       189 l~~~L~~~l~  198 (450)
                      ++..+.+.+.
T Consensus       158 l~~~l~~l~~  167 (415)
T 3p96_A          158 LRTALNRVSS  167 (415)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            5666655443

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.61  E-value=1.1e-06  Score=76.55  Aligned_cols=112  Identities=9%  Similarity=0.079  Sum_probs=75.5

Q ss_pred             EEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhccCCCceE
Q 044728          260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGIS  339 (450)
Q Consensus       260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r~~~~t~  339 (450)
                      ..++|..+|+||.++++++.|++.|+||..-.+....+...-.|.+.        +   .++.++.|.+. .-......+
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~--------d---~~~a~~~L~~~-G~~v~~~sv   74 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS--------D---PDKAYKALKDN-HFAVNITDV   74 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES--------C---HHHHHHHHHHT-TCCEEEEEE
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC--------C---HHHHHHHHHHc-CCeEeeeeE
Confidence            36888999999999999999999999999887754332222224332        1   23334444431 111111246


Q ss_pred             EEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEE
Q 044728          340 LELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYV  383 (450)
Q Consensus       340 iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v  383 (450)
                      +-+..+|+||.+++|+++|++.||||.+......+.++.-+|.+
T Consensus        75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~  118 (144)
T 2f06_A           75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP  118 (144)
T ss_dssp             EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence            77788899999999999999999999887755234445444433

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.58  E-value=9.8e-07  Score=76.94  Aligned_cols=112  Identities=17%  Similarity=0.189  Sum_probs=76.4

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCCccee
Q 044728           37 TLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSLRRS  116 (450)
Q Consensus        37 ~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~~~r~  116 (450)
                      .+|+|..+|+||.++++++.|++.|+||..-.+....++..-.|.+.        +.   ++.++.|.....        
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~--------d~---~~a~~~L~~~G~--------   67 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS--------DP---DKAYKALKDNHF--------   67 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES--------CH---HHHHHHHHHTTC--------
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC--------CH---HHHHHHHHHcCC--------
Confidence            58899999999999999999999999999887763222111124321        12   233444433221        


Q ss_pred             eeccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEE
Q 044728          117 VGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYI  171 (450)
Q Consensus       117 v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V  171 (450)
                          ......++.+..+|+||.+++++++|+++|+||.+...+..++...-+|.+
T Consensus        68 ----~v~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~  118 (144)
T 2f06_A           68 ----AVNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP  118 (144)
T ss_dssp             ----CEEEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             ----eEeeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence                001124677788999999999999999999999887766334455545544

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=98.13  E-value=0.0025  Score=68.16  Aligned_cols=267  Identities=12%  Similarity=0.157  Sum_probs=157.0

Q ss_pred             EEEEEE-cCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCC--
Q 044728           37 TLIKVD-SANKRGSLLELVQVLNDLDLIIRRAYISS-DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRS--  112 (450)
Q Consensus        37 ~~V~V~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~--  112 (450)
                      +.|+|. .++.||.++++...|++.|++|.-...+. .+|..--+|.|...+-     +...+.+++ +.......++  
T Consensus       271 ~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~-----~~a~~~l~~-~~~el~~~~~~~  344 (600)
T 3l76_A          271 AKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLL-----NTAEAVTSA-IAPALRSYPEAD  344 (600)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGH-----HHHHHHHHH-HGGGGSSSTTCS
T ss_pred             EEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHH-----HHHHHHHHH-HHHHhhcccccc
Confidence            445554 47999999999999999999996444332 4555544576633211     111122222 2211100000  


Q ss_pred             cceeeeccCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHH
Q 044728          113 LRRSVGVQAALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKI  189 (450)
Q Consensus       113 ~~r~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l  189 (450)
                      ....+  ....+...|.|++.   .+||..+++..+|+++|+||....  |.  ...-.|.|..          +..++.
T Consensus       345 ~~~~v--~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS--e~~Is~vI~~----------~d~~~A  408 (600)
T 3l76_A          345 QEAEI--IVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS--EVKVSCVIDQ----------RDADRA  408 (600)
T ss_dssp             SSSEE--EEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC--SSEEEEEEEG----------GGHHHH
T ss_pred             Cccee--EecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC--CCEEEEEEcH----------HHHHHH
Confidence            01122  23566888999985   799999999999999999997665  32  2344455554          122344


Q ss_pred             HHHHHHhhhccccccccccccccccchhhhHHHHhhhccccccccccCCCCCCCCCCCEEEEEeccCCceEEEEEE-ecC
Q 044728          190 KRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDKGYTVVNLR-CPD  268 (450)
Q Consensus       190 ~~~L~~~l~~~~d~~~~~~~~s~~~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~-~~D  268 (450)
                      .+.|++.+..+. .   +. .        .+       ....+.          ..-.-|..+    .+.+.|+|. .+|
T Consensus       409 v~aLh~~f~~~~-t---~~-~--------~~-------~~~~~~----------~~v~Gia~~----~~~a~i~i~~~~~  454 (600)
T 3l76_A          409 IAALSNAFGVTL-S---PP-K--------NQ-------TDTSHL----------PAVRGVALD----QDQAQIAIRHVPD  454 (600)
T ss_dssp             HHHHHHHTTCCB-C---CC-C--------CC-------CC---C----------CSCCEEEEE----CSEEEEEEEEEES
T ss_pred             HHHHHHhhcccC-C---Cc-c--------cc-------cccccc----------CceEEEEee----CCEEEEEEecCCC
Confidence            456666554321 0   00 0        00       000010          001233332    355566664 589


Q ss_pred             CcChHHHHHHHHHhCCceEEEEEEEec----CC--eEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhccC--------
Q 044728          269 RPKLLFDAVCTLTDMQYVVYHATVIAE----SP--EAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRT--------  334 (450)
Q Consensus       269 rpGLl~~i~~~L~~~glnI~~A~I~t~----~g--~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r~--------  334 (450)
                      +||+.+++...|++.|+||.--.....    +|  ..--+|.|..         ...++..+.|++. ....        
T Consensus       455 ~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~---------~d~~~a~~~l~~~-~~~~~~~~v~~~  524 (600)
T 3l76_A          455 RPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE---------GDSSQAEAILQPL-IKDWLDAAIVVN  524 (600)
T ss_dssp             STTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH---------HHHHHHHHHHHHH-TTTSTTCEEEEE
T ss_pred             CccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH---------HHHHHHHHHHHHH-HHhcCCceEEEe
Confidence            999999999999999999954333221    24  3344566653         2444445555542 2211        


Q ss_pred             CCceEEEEee---CCCcchHHHHHHHHHHCCceEEEEE
Q 044728          335 SEGISLELCC---EDRAGLLSDVTRIFRENGLSVTRAE  369 (450)
Q Consensus       335 ~~~t~iev~~---~DrpGLL~~It~~l~~~gi~I~~Ak  369 (450)
                      +.-..|.|.+   ..+||+.+++.++|++.||||....
T Consensus       525 ~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          525 KAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             CCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             CCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence            2346788877   4999999999999999999998866

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.09  E-value=1.8e-05  Score=62.99  Aligned_cols=67  Identities=12%  Similarity=0.221  Sum_probs=53.2

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728          124 EHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL  197 (450)
Q Consensus       124 ~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l  197 (450)
                      ....|+|.++||||++++|+++|+++|+||.+....+.++.+...+.+.-+  +     ...++.|.+.|.++.
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~-----~~~l~~l~~~L~~~~   70 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--E-----KQDFTYLRNEFEAFG   70 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--S-----CCCHHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--C-----CCCHHHHHHHHHHHH
Confidence            357899999999999999999999999999999998877777777777542  2     123567777776544

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.04  E-value=3.6e-05  Score=61.22  Aligned_cols=64  Identities=6%  Similarity=0.033  Sum_probs=49.9

Q ss_pred             eEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHH
Q 044728          259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEA  328 (450)
Q Consensus       259 ~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  328 (450)
                      ...|.|.++||||++++++++|+++|+||.+....+.+|.+.-.+.+.-++..      ..+.|.+.|.+
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~------~l~~l~~~L~~   68 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQ------DFTYLRNEFEA   68 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCC------CHHHHHHHHHH
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCC------CHHHHHHHHHH
Confidence            35799999999999999999999999999999998877877666666433211      35566666654

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.98  E-value=2.8e-05  Score=61.19  Aligned_cols=64  Identities=6%  Similarity=0.193  Sum_probs=50.7

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      .+.|.|.+.||||+|++|+++|++.|+||.++.+.+.++.+...|.+...+     ...++++.++|.+
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~-----~~~l~~l~~~L~~   68 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKN-----TDKLTTLMDKLRK   68 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESS-----HHHHHHHHHHHTT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECC-----HHHHHHHHHHHhc
Confidence            357899999999999999999999999999999988766666666664432     3456677777764

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.80  E-value=0.0001  Score=57.93  Aligned_cols=63  Identities=17%  Similarity=0.312  Sum_probs=47.8

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHH
Q 044728          125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLL  194 (450)
Q Consensus       125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~  194 (450)
                      .+.|.|.+.|+||+|++|+++|++.|+||.+....+.++.+...|.+...       +...++++.+.|.
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~L~   67 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-------NTDKLTTLMDKLR   67 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-------SHHHHHHHHHHHT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence            56788999999999999999999999999999998865555555555441       3445555555553

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.61  E-value=0.00052  Score=61.16  Aligned_cols=102  Identities=13%  Similarity=0.226  Sum_probs=72.8

Q ss_pred             ceEEEEEE-ecCCcChHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHH---Hhc
Q 044728          258 GYTVVNLR-CPDRPKLLFDAVCTLTDMQYVVYHATVIA-ESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAA---IKR  332 (450)
Q Consensus       258 ~~t~v~V~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~---L~~  332 (450)
                      +.+.|+|. .+|+||.++++...|+++|+||..-.... .+|...-+|.|...         ..++..+.|.+.   +..
T Consensus        24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~---------~~~~a~~~l~~~~~~l~~   94 (167)
T 2re1_A           24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRG---------DYKQTLEILSERQDSIGA   94 (167)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGG---------GHHHHHHHHHHSSTTTTC
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEech---------HHHHHHHHHHHHHHHcCC
Confidence            56788888 49999999999999999999998765432 24555556777631         223333444432   111


Q ss_pred             c----CCCceEEEEeeCC---CcchHHHHHHHHHHCCceEEEE
Q 044728          333 R----TSEGISLELCCED---RAGLLSDVTRIFRENGLSVTRA  368 (450)
Q Consensus       333 r----~~~~t~iev~~~D---rpGLL~~It~~l~~~gi~I~~A  368 (450)
                      .    ......+.|.+.+   +||+++++.++|++.||||+..
T Consensus        95 ~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i  137 (167)
T 2re1_A           95 ASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI  137 (167)
T ss_dssp             SEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred             ceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence            0    0234789999987   9999999999999999999994

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.55  E-value=0.00071  Score=60.25  Aligned_cols=110  Identities=13%  Similarity=0.148  Sum_probs=74.8

Q ss_pred             CCeEEEEEE-cCCCcchHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCC
Q 044728           34 RKATLIKVD-SANKRGSLLELVQVLNDLDLIIRRAYIS-SDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFR  111 (450)
Q Consensus        34 ~~~~~V~V~-~~DrpGLl~~i~~~L~~~glnI~~A~i~-t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~  111 (450)
                      ++.+.|+|. .+|+||.++++.++|++.|+||.--... +.+|...-+|.|...+.     ++..+.+++ +.....  .
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~l~--~   94 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDY-----KQTLEILSE-RQDSIG--A   94 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGH-----HHHHHHHHH-SSTTTT--C
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHH-----HHHHHHHHH-HHHHcC--C
Confidence            356889998 5999999999999999999999876664 23454444576633111     222233333 221111  0


Q ss_pred             CcceeeeccCCCceEEEEEEeCC---CcchHHHHHHHHHhCCceEEEE
Q 044728          112 SLRRSVGVQAALEHTTIELTGRD---RPGLLSEVFAVLSDLKCNVMGA  156 (450)
Q Consensus       112 ~~~r~v~~~~~~~~t~i~v~~~D---rpGLl~~i~~~L~~~glnI~~A  156 (450)
                         ..+  ....+...+.|.+.+   +||.++++..+|+++|+||...
T Consensus        95 ---~~i--~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i  137 (167)
T 2re1_A           95 ---ASI--DGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI  137 (167)
T ss_dssp             ---SEE--EEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred             ---ceE--EecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence               111  234568899999976   9999999999999999999984

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.48  E-value=0.0039  Score=60.52  Aligned_cols=117  Identities=8%  Similarity=0.038  Sum_probs=69.9

Q ss_pred             eEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCCc
Q 044728           36 ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS--DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRSL  113 (450)
Q Consensus        36 ~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~~  113 (450)
                      .+.++|.|+||||+.+.|+++|+++|+||.+.+.++  ..|++.=...+.-+++ ..+.+    .|++.|..... ..  
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~~~~----~L~~~f~~la~-~~--   77 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VIPLA----SLRTGFGVIAA-KF--   77 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CCCHH----HHHHHHHHHHH-HT--
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CCCHH----HHHHHHHHHHH-Hc--
Confidence            368999999999999999999999999999999985  4576654444433332 22323    44444422110 00  


Q ss_pred             ceeeeccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728          114 RRSVGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT  160 (450)
Q Consensus       114 ~r~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t  160 (450)
                      .-.+..........|-|....+-.-|.+|-.....-.+++.-+-+.+
T Consensus        78 ~m~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  124 (288)
T 3obi_A           78 TMGWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS  124 (288)
T ss_dssp             TCEEEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred             CCEEEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence            01122211222344555555555577777777776666655454554

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.41  E-value=0.0028  Score=61.52  Aligned_cols=116  Identities=9%  Similarity=0.026  Sum_probs=66.4

Q ss_pred             CeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCC
Q 044728           35 KATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS--DGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRS  112 (450)
Q Consensus        35 ~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~  112 (450)
                      ..+.++|.|+||||+.+.|+++|+++|+||.+.+.++  ..|++.=...+ +..+..+  +    .|++.|..... .. 
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~-~~~~~~~--~----~L~~~f~~la~-~~-   76 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSV-EIPVAGV--N----DFNSAFGKVVE-KY-   76 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEE-ECCC-----C----HHHHHHHHHHG-GG-
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEE-EcCCCCH--H----HHHHHHHHHHH-Hc-
Confidence            4578999999999999999999999999999999985  45766433332 2222111  2    34444422110 00 


Q ss_pred             cceeeeccCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 044728          113 LRRSVGVQAALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT  160 (450)
Q Consensus       113 ~~r~v~~~~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t  160 (450)
                       .-.+..........|-|....+-.-|.+|-.....-.+++.=+-+.+
T Consensus        77 -~m~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  123 (287)
T 3nrb_A           77 -NAEWWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIIS  123 (287)
T ss_dssp             -TCEEEEEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEE
T ss_pred             -CCeeEeeccCCCcEEEEEEeCCCcCHHHHHHHHHCCCCCeEEEEEEe
Confidence             01122211112233444444444567777777766666555444555

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.38  E-value=0.0048  Score=59.82  Aligned_cols=46  Identities=9%  Similarity=0.070  Sum_probs=39.2

Q ss_pred             eEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEE
Q 044728           36 ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS--DGEWFMDVFH   81 (450)
Q Consensus        36 ~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t--~~g~~~d~F~   81 (450)
                      .+.++|.|+||||+.+.++++|++.|+||.+.+.++  ..|++.=...
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~   55 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVE   55 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEE
Confidence            378999999999999999999999999999999996  4566643333

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.36  E-value=0.0016  Score=58.67  Aligned_cols=114  Identities=11%  Similarity=0.117  Sum_probs=77.0

Q ss_pred             CceEEEEE-EecCCcChHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044728          257 KGYTVVNL-RCPDRPKLLFDAVCTLTDMQYVVYHATVIAE---SPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR  332 (450)
Q Consensus       257 ~~~t~v~V-~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~---~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~  332 (450)
                      .+.+.|+| ..+|+||.++++...|++.|+||..-...+.   ++..--.|.+..         ...++..+.|.+....
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~---------~d~~~a~~~l~~~~~~   83 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR---------SDGRRAMEILKKLQVQ   83 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH---------HHHHHHHHHHHTTTTT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc---------ccHHHHHHHHHHHHHh
Confidence            35667777 4699999999999999999999987655543   333333477653         1333444445432111


Q ss_pred             ---c----CCCceEEEEeeC---CCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEE
Q 044728          333 ---R----TSEGISLELCCE---DRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYV  383 (450)
Q Consensus       333 ---r----~~~~t~iev~~~---DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v  383 (450)
                         .    .....+|.|.+.   ++||+++++.++|++.||||....  |..  ..-.|.|
T Consensus        84 ~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe--~~Is~vV  140 (178)
T 2dtj_A           84 GNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSE--IRISVLI  140 (178)
T ss_dssp             TTCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EET--TEEEEEE
T ss_pred             cCCCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCC--CeEEEEE
Confidence               1    123467788887   899999999999999999999943  322  3335666

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.35  E-value=0.003  Score=61.68  Aligned_cols=47  Identities=17%  Similarity=0.285  Sum_probs=39.9

Q ss_pred             eEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEE
Q 044728           36 ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSD--GEWFMDVFHV   82 (450)
Q Consensus        36 ~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~g~~~d~F~V   82 (450)
                      .+.++|.|+||||+.+.|+++|++.|+||.+.+.+++  .|++.=...+
T Consensus        22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~   70 (302)
T 3o1l_A           22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEI   70 (302)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEE
Confidence            4689999999999999999999999999999999974  5766534333

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.27  E-value=0.0077  Score=58.43  Aligned_cols=106  Identities=15%  Similarity=0.153  Sum_probs=68.4

Q ss_pred             eEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHH---Hhc-
Q 044728          259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIA--ESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAA---IKR-  332 (450)
Q Consensus       259 ~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~---L~~-  332 (450)
                      ...++|.|+||||+.+++++.|+++|+||.+.+.++  ..|++.-...+.-+.+ ..    ..+.|++.|...   +.- 
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~----~~~~L~~~f~~la~~~~m~   80 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VI----PLASLRTGFGVIAAKFTMG   80 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CC----CHHHHHHHHHHHHHHTTCE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CC----CHHHHHHHHHHHHHHcCCE
Confidence            357999999999999999999999999999999875  3566554444432222 12    245666666542   210 


Q ss_pred             ----cCCCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEE
Q 044728          333 ----RTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAE  369 (450)
Q Consensus       333 ----r~~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~Ak  369 (450)
                          ...+...|-|-.--+---|.+|-.....-.++++-+-
T Consensus        81 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~  121 (288)
T 3obi_A           81 WHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTA  121 (288)
T ss_dssp             EEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEE
T ss_pred             EEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEE
Confidence                1223334444444444577788877777666655433

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.25  E-value=0.0031  Score=56.68  Aligned_cols=109  Identities=17%  Similarity=0.202  Sum_probs=73.5

Q ss_pred             CCeEEEEE-EcCCCcchHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCcc-
Q 044728           34 RKATLIKV-DSANKRGSLLELVQVLNDLDLIIRRAYISSD---GEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRAR-  108 (450)
Q Consensus        34 ~~~~~V~V-~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~---~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~-  108 (450)
                      ++.+.|+| ..+|+||.++++.+.|++.|+||.--...+.   +|..--.|.+...+         .++.++.|..... 
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d---------~~~a~~~l~~~~~~   83 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSD---------GRRAMEILKKLQVQ   83 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHH---------HHHHHHHHHTTTTT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcccc---------HHHHHHHHHHHHHh
Confidence            46688888 4699999999999999999999986655532   33332236653311         1223344432110 


Q ss_pred             CCCCcceeeeccCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEE
Q 044728          109 SFRSLRRSVGVQAALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNVMGA  156 (450)
Q Consensus       109 ~~~~~~r~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI~~A  156 (450)
                      ..   ...+  ....+...|.|+|.   ++||.++++..+|++.|+||...
T Consensus        84 ~~---~~~v--~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~i  129 (178)
T 2dtj_A           84 GN---WTNV--LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  129 (178)
T ss_dssp             TT---CSEE--EEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred             cC---CCeE--EEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEE
Confidence            00   0112  23456788888885   89999999999999999999884

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.19  E-value=0.0077  Score=58.35  Aligned_cols=102  Identities=12%  Similarity=0.076  Sum_probs=63.4

Q ss_pred             eEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc----
Q 044728          259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIA--ESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR----  332 (450)
Q Consensus       259 ~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~----  332 (450)
                      ...++|.|+||||+++++++.|+++|+||.+.+.++  ..|++.-...+..+.  ..    ..+.|++.|.+.-.+    
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~----~~~~L~~~f~~la~~l~m~   81 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD--DF----DEAGFRAGLAERSEAFGMA   81 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS--SC----CHHHHHHHHHHHHGGGTCE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC--CC----CHHHHHHHHHHHHHHcCCE
Confidence            357999999999999999999999999999999885  356654344443222  12    356677777543211    


Q ss_pred             ----cCCCceEEEEeeCCCcchHHHHHHHHHHCCceEE
Q 044728          333 ----RTSEGISLELCCEDRAGLLSDVTRIFRENGLSVT  366 (450)
Q Consensus       333 ----r~~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~  366 (450)
                          ...+...|=|-+--+---|.+|-.....-.++.+
T Consensus        82 ~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~  119 (286)
T 3n0v_A           82 FELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMD  119 (286)
T ss_dssp             EEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCCE
T ss_pred             EEeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCcE
Confidence                1122223333333333466666666665555443

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.18  E-value=0.0069  Score=59.10  Aligned_cols=102  Identities=14%  Similarity=0.161  Sum_probs=62.5

Q ss_pred             EEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHH---Hhc--
Q 044728          260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAE--SPEAYQEYYIRHVDGNPISSEAERQRVINCLEAA---IKR--  332 (450)
Q Consensus       260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~---L~~--  332 (450)
                      .+++|.|+||||++++|++.|+++|+||.+++.++.  .|++.=...+.-+.+ ..    ..+.|+++|...   +.-  
T Consensus        23 ~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~-~~----~~~~L~~~l~~la~~l~m~~   97 (302)
T 3o1l_A           23 FRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL-PF----DLDGFREAFTPIAEEFSMDW   97 (302)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS-SS----CHHHHHHHHHHHHHHHTCEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC-CC----CHHHHHHHHHHHHHHhCCee
Confidence            479999999999999999999999999999998874  566554444432221 11    245666666432   211  


Q ss_pred             ---cCCCceEEEEeeCCCcchHHHHHHHHHHCCceEE
Q 044728          333 ---RTSEGISLELCCEDRAGLLSDVTRIFRENGLSVT  366 (450)
Q Consensus       333 ---r~~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~  366 (450)
                         ...+...|-|-+--+---|.+|-.....-.++.+
T Consensus        98 ~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~  134 (302)
T 3o1l_A           98 RITDSAQKKRVVLMASRESHCLADLLHRWHSDELDCD  134 (302)
T ss_dssp             EEEETTSCCEEEEEECSCCHHHHHHHHHHHTTCSCSE
T ss_pred             eecccCCCcEEEEEEeCCchhHHHHHHHHHCCCCCcE
Confidence               1122222333322233356677666666555443

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.17  E-value=0.0079  Score=58.46  Aligned_cols=42  Identities=10%  Similarity=0.193  Sum_probs=37.9

Q ss_pred             eEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeEE
Q 044728           36 ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS--DGEWFM   77 (450)
Q Consensus        36 ~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t--~~g~~~   77 (450)
                      .+.++|.|+||||+.+.|+++|++.|+||.+.+.++  ..|++.
T Consensus        10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff   53 (292)
T 3lou_A           10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFF   53 (292)
T ss_dssp             EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEE
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceE
Confidence            478999999999999999999999999999999996  457664

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.13  E-value=0.0031  Score=56.06  Aligned_cols=109  Identities=11%  Similarity=0.146  Sum_probs=73.0

Q ss_pred             CCeEEEEEEc-CCCcchHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccC
Q 044728           34 RKATLIKVDS-ANKRGSLLELVQVLNDLDLIIRRAYISSD---GEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARS  109 (450)
Q Consensus        34 ~~~~~V~V~~-~DrpGLl~~i~~~L~~~glnI~~A~i~t~---~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~  109 (450)
                      ++.+.|+|.. +|+||.++++.++|++.|+||.--.....   .|...-+|.|...+.     ++..+.|++...+.. .
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~-----~~a~~~L~~~~~~~~-~   87 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFA-----QEALEALEPVLAEIG-G   87 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGH-----HHHHHHHHHHHHHHC-C
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHH-----HHHHHHHHHHHHHhC-C
Confidence            4667888876 99999999999999999999986554322   344434577644221     122223332111111 0


Q ss_pred             CCCcceeeeccCCCceEEEEEEeCC---CcchHHHHHHHHHhCCceEEEE
Q 044728          110 FRSLRRSVGVQAALEHTTIELTGRD---RPGLLSEVFAVLSDLKCNVMGA  156 (450)
Q Consensus       110 ~~~~~r~v~~~~~~~~t~i~v~~~D---rpGLl~~i~~~L~~~glnI~~A  156 (450)
                            .+  ....+...+.|+|.+   +||.++++..+|++.|+||...
T Consensus        88 ------~v--~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  129 (167)
T 2dt9_A           88 ------EA--ILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI  129 (167)
T ss_dssp             ------EE--EEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE
T ss_pred             ------cE--EEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence                  11  234567889999976   9999999999999999999443

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.12  E-value=0.002  Score=57.27  Aligned_cols=120  Identities=9%  Similarity=0.060  Sum_probs=76.9

Q ss_pred             CceEEEEEEe-cCCcChHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc
Q 044728          257 KGYTVVNLRC-PDRPKLLFDAVCTLTDMQYVVYHATVIAE---SPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR  332 (450)
Q Consensus       257 ~~~t~v~V~~-~DrpGLl~~i~~~L~~~glnI~~A~I~t~---~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~  332 (450)
                      .+.+.|+|.+ +|+||.++++..+|++.|+||..-.....   .|..--+|.|...+.      ++..++-+.+...+.-
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~------~~a~~~L~~~~~~~~~   87 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFA------QEALEALEPVLAEIGG   87 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGH------HHHHHHHHHHHHHHCC
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHH------HHHHHHHHHHHHHhCC
Confidence            4566777776 89999999999999999999987543322   234555677764211      1111221223222321


Q ss_pred             c---CCCceEEEEeeCC---CcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeC
Q 044728          333 R---TSEGISLELCCED---RAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDA  386 (450)
Q Consensus       333 r---~~~~t~iev~~~D---rpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~  386 (450)
                      .   .+...++.|.+.+   +||+++++.++|++.||||....  |- +. .-.|.|...
T Consensus        88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~S-e~-~is~vv~~~  143 (167)
T 2dt9_A           88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TS-EV-RISVIIPAE  143 (167)
T ss_dssp             EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--EC-SS-EEEEEEEGG
T ss_pred             cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--cc-CC-EEEEEEeHH
Confidence            1   1234668899886   99999999999999999996543  33 22 345656433

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.10  E-value=0.01  Score=57.62  Aligned_cols=107  Identities=14%  Similarity=0.156  Sum_probs=63.9

Q ss_pred             eEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEecC-CCCCCCcHHHHHHHHHHHHHH---Hhc
Q 044728          259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIA--ESPEAYQEYYIRHV-DGNPISSEAERQRVINCLEAA---IKR  332 (450)
Q Consensus       259 ~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~F~V~~~-~g~~~~~~~~~~~l~~~L~~~---L~~  332 (450)
                      ...++|.|+||||+++++++.|+++|+||.+++.++  ..|++.-...+.-+ .+...    ..+.|++.|.+.   +.-
T Consensus        10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~----~~~~L~~~f~~la~~~~m   85 (292)
T 3lou_A           10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADAL----RVDALRREFEPIAERFRM   85 (292)
T ss_dssp             EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----C----CHHHHHHHHHHHHHHHTC
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCC----CHHHHHHHHHHHHHhcCc
Confidence            457999999999999999999999999999999885  35665433333321 01012    245666666542   211


Q ss_pred             -----cCCCceEEEEeeCCCcchHHHHHHHHHHCCceEEEEE
Q 044728          333 -----RTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRAE  369 (450)
Q Consensus       333 -----r~~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~Ak  369 (450)
                           ...+...|=|-+--+---|.+|-.....-.++++-+-
T Consensus        86 ~~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~  127 (292)
T 3lou_A           86 QWAIHDVAARPKVLIMVSKLEHCLADLLFRWKMGELKMDIVG  127 (292)
T ss_dssp             EEEEEETTSCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEE
T ss_pred             EEEeeccCCCCEEEEEEcCCCcCHHHHHHHHHcCCCCcEEEE
Confidence                 1122223333332233367777777766655544333

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=96.98  E-value=0.018  Score=55.86  Aligned_cols=103  Identities=12%  Similarity=0.140  Sum_probs=64.1

Q ss_pred             eEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc----
Q 044728          259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIA--ESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR----  332 (450)
Q Consensus       259 ~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~----  332 (450)
                      ...++|.|+||||+++++++.|+++|+||.+++.++  ..|++.=...+.. .+  .    ..+.|++.|...-.+    
T Consensus         7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~~--~----~~~~L~~~f~~la~~~~m~   79 (287)
T 3nrb_A            7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI-PV--A----GVNDFNSAFGKVVEKYNAE   79 (287)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC-CC---------CHHHHHHHHHHGGGTCE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc-CC--C----CHHHHHHHHHHHHHHcCCe
Confidence            467999999999999999999999999999999875  3565543333332 11  1    233666666543211    


Q ss_pred             ----cCCCceEEEEeeCCCcchHHHHHHHHHHCCceEEEE
Q 044728          333 ----RTSEGISLELCCEDRAGLLSDVTRIFRENGLSVTRA  368 (450)
Q Consensus       333 ----r~~~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~A  368 (450)
                          ...+...|-|-.--+---|.+|-.....-.++++-+
T Consensus        80 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~  119 (287)
T 3nrb_A           80 WWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDMEVV  119 (287)
T ss_dssp             EEEEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEE
T ss_pred             eEeeccCCCcEEEEEEeCCCcCHHHHHHHHHCCCCCeEEE
Confidence                112233343333333457777777777766654433

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.94  E-value=0.0027  Score=56.48  Aligned_cols=65  Identities=17%  Similarity=0.234  Sum_probs=51.3

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728          125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN--SRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL  197 (450)
Q Consensus       125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~--~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l  197 (450)
                      ...|.|...|+||+|++|+++|+++|+||.+..+.+..  +...-+|.|..        ++..+++|.+.|.++.
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~--------d~~~leqI~kqL~Kl~   69 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--------DEKVLEQIEKQLHKLV   69 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec--------cHHHHHHHHHHHcCCC
Confidence            36789999999999999999999999999999987542  55566666653        2467788888887643

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=96.78  E-value=0.16  Score=54.06  Aligned_cols=191  Identities=14%  Similarity=0.174  Sum_probs=119.0

Q ss_pred             CCeEEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCC
Q 044728           34 RKATLIKVDS---ANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSF  110 (450)
Q Consensus        34 ~~~~~V~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~  110 (450)
                      .+...|.|.+   ..+||..+++..+|.+.|+||.-..  +. ...+ +|.|...+     .++..+.|.+.+......+
T Consensus       353 ~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS-e~~I-s~vI~~~d-----~~~Av~aLh~~f~~~~t~~  423 (600)
T 3l76_A          353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS-EVKV-SCVIDQRD-----ADRAIAALSNAFGVTLSPP  423 (600)
T ss_dssp             CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC-SSEE-EEEEEGGG-----HHHHHHHHHHHTTCCBCCC
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC-CCEE-EEEEcHHH-----HHHHHHHHHHhhcccCCCc
Confidence            4667888886   4899999999999999999997554  33 2222 35554332     1345666777765431100


Q ss_pred             C-----Ccceeee-ccCCCceEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEEee----CC--eEEEEEEEeecCCC
Q 044728          111 R-----SLRRSVG-VQAALEHTTIELT-GRDRPGLLSEVFAVLSDLKCNVMGAEVWTH----NS--RMASVVYITSEATG  177 (450)
Q Consensus       111 ~-----~~~r~v~-~~~~~~~t~i~v~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t~----~~--~~~d~f~V~~~~~g  177 (450)
                      .     .....|. ...+.+...|+|. .+|+||..++|.+.|+++|+||.-......    .|  ...-.|.|..    
T Consensus       424 ~~~~~~~~~~~v~Gia~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~----  499 (600)
T 3l76_A          424 KNQTDTSHLPAVRGVALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE----  499 (600)
T ss_dssp             CCCCC---CCSCCEEEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH----
T ss_pred             cccccccccCceEEEEeeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH----
Confidence            0     0011122 2445667777775 489999999999999999999965544432    13  2344666655    


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhccccccccccccccccchhhhHHHHhhhccccccccccCCCCCCCCCCCEEEEEeccCC
Q 044728          178 LPIDDPDTLAKIKRLLLYVLKGDRDKRSANTAVSVDSTHKERRLHQMMYADRDYDMNYAESGSASGRSKPLVTVESCTDK  257 (450)
Q Consensus       178 ~~i~~~~~~~~l~~~L~~~l~~~~d~~~~~~~~s~~~~~l~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~  257 (450)
                            +.+++..+.|.+ +..+.                              .             ...|.++    .
T Consensus       500 ------~d~~~a~~~l~~-~~~~~------------------------------~-------------~~~v~~~----~  525 (600)
T 3l76_A          500 ------GDSSQAEAILQP-LIKDW------------------------------L-------------DAAIVVN----K  525 (600)
T ss_dssp             ------HHHHHHHHHHHH-HTTTS------------------------------T-------------TCEEEEE----C
T ss_pred             ------HHHHHHHHHHHH-HHHhc------------------------------C-------------CceEEEe----C
Confidence                  222333333332 22111                              0             1123332    2


Q ss_pred             ceEEEEEEe---cCCcChHHHHHHHHHhCCceEEEEE
Q 044728          258 GYTVVNLRC---PDRPKLLFDAVCTLTDMQYVVYHAT  291 (450)
Q Consensus       258 ~~t~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~  291 (450)
                      +...|.|.|   +.+||.-+++..+|++.|+||..-.
T Consensus       526 ~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          526 AIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             CEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             CeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence            456677775   6899999999999999999997543

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.75  E-value=0.012  Score=53.12  Aligned_cols=111  Identities=13%  Similarity=0.155  Sum_probs=73.3

Q ss_pred             CCeEEEEEE-cCCCcchHHHHHHHHHhCCceEEEEEEEe-c--CCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccC
Q 044728           34 RKATLIKVD-SANKRGSLLELVQVLNDLDLIIRRAYISS-D--GEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARS  109 (450)
Q Consensus        34 ~~~~~V~V~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~--~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~  109 (450)
                      ++.+.|+|. .+|+||.++++...|++.|+||.--.... .  +|..--+|.|...+-.+  ..+.+++++..+..    
T Consensus        14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~--a~~~L~~~~~el~~----   87 (181)
T 3s1t_A           14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPA--AVEKLDSLRNEIGF----   87 (181)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHH--HHHHHHHTHHHHCC----
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHH--HHHHHHHHHHhcCc----
Confidence            345666664 59999999999999999999997555432 2  46555567764432110  01112222222210    


Q ss_pred             CCCcceeeeccCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 044728          110 FRSLRRSVGVQAALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNVMGAE  157 (450)
Q Consensus       110 ~~~~~r~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI~~A~  157 (450)
                           ..+.  ...+...+.++|.   +.||..+++..+|++.|+||....
T Consensus        88 -----~~v~--~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           88 -----SQLL--YDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             -----SEEE--EESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             -----ceEE--EeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence                 1122  2456788888875   899999999999999999998876

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.75  E-value=0.004  Score=55.34  Aligned_cols=62  Identities=19%  Similarity=0.324  Sum_probs=49.2

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG--SQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g--~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      +.|.|...|+||+|++|+.+|++.|+||.++.+.+..  +...-+|.+. .+     +..+++|.++|.+
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~d-----~~~leqI~kqL~K   67 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-GD-----EKVLEQIEKQLHK   67 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-SC-----HHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-cc-----HHHHHHHHHHHcC
Confidence            5789999999999999999999999999999987543  3455556554 22     4577888888876

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.73  E-value=0.0049  Score=54.80  Aligned_cols=65  Identities=17%  Similarity=0.179  Sum_probs=51.7

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728          125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL  197 (450)
Q Consensus       125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l  197 (450)
                      ...|.|...|+||+|++|+++|+++|+||.+..+.+.  .+...-+|.|..        ++..+++|.+.|.++.
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~--------d~~~leql~kQL~Kl~   70 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKLI   70 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec--------cHHHHHHHHHHhcCCC
Confidence            4678999999999999999999999999999988753  355666666664        2457788888887643

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.49  E-value=0.0088  Score=52.82  Aligned_cols=58  Identities=29%  Similarity=0.495  Sum_probs=43.0

Q ss_pred             EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHh
Q 044728          339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIG  404 (450)
Q Consensus       339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~  404 (450)
                      .|+|.+.||+|+|++|+++|+++++||..+.+.+.|.     +|+.-+.   ........|.+.+.
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~-----i~~~~~~---~~~~~~~~L~~~l~   59 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR-----IYLNFAE---LEFESFSSLMAEIR   59 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE-----EEEEECC---CCHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE-----EEEEEEe---CCHHHHHHHHHHHH
Confidence            4899999999999999999999999999999977642     5554441   12234455555444

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.48  E-value=0.0075  Score=53.59  Aligned_cols=62  Identities=21%  Similarity=0.329  Sum_probs=48.9

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC--ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG--SQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g--~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      +.|.|...|+||+|++|+.+|++.|+||.++.+.+..  +...-+|-+...      +..+++|.++|.+
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d------~~~leql~kQL~K   68 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP------DEIVEQITKQLNK   68 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC------HHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc------HHHHHHHHHHhcC
Confidence            5789999999999999999999999999999986433  345555655422      4577888888876

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.31  E-value=0.023  Score=51.14  Aligned_cols=106  Identities=10%  Similarity=0.097  Sum_probs=70.4

Q ss_pred             ceEEEEE-EecCCcChHHHHHHHHHhCCceEEEEEEE-ec--CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc-
Q 044728          258 GYTVVNL-RCPDRPKLLFDAVCTLTDMQYVVYHATVI-AE--SPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR-  332 (450)
Q Consensus       258 ~~t~v~V-~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t~--~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~-  332 (450)
                      +.+.|+| ..+|+||.++++...|++.|+||.--... +.  .|..--+|.|...+.      +...++.+.+...+.. 
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~------~~a~~~L~~~~~el~~~   88 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVG------PAAVEKLDSLRNEIGFS   88 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTH------HHHHHHHHHTHHHHCCS
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHH------HHHHHHHHHHHHhcCcc
Confidence            4445555 36899999999999999999999755432 22  456666788864211      1112211222222211 


Q ss_pred             cC---CCceEEEEeeC---CCcchHHHHHHHHHHCCceEEEEE
Q 044728          333 RT---SEGISLELCCE---DRAGLLSDVTRIFRENGLSVTRAE  369 (450)
Q Consensus       333 r~---~~~t~iev~~~---DrpGLL~~It~~l~~~gi~I~~Ak  369 (450)
                      ..   ..-.++.|.+.   ++||+.+++.++|++.||||....
T Consensus        89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence            01   23467777776   899999999999999999999877

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=96.13  E-value=0.01  Score=54.37  Aligned_cols=121  Identities=14%  Similarity=0.151  Sum_probs=77.3

Q ss_pred             CCCCEE-EEeecCCCCeEEEEEE-cCCCcchHHHHHHHHHhCCceEEEEEEEe---cCCeEEEEEEEEeCCCCCCCchHH
Q 044728           21 MNPPRV-TVDNTSNRKATLIKVD-SANKRGSLLELVQVLNDLDLIIRRAYISS---DGEWFMDVFHVTDQNGNKLSEDDV   95 (450)
Q Consensus        21 ~~~p~V-~i~~~~~~~~~~V~V~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t---~~g~~~d~F~V~~~~g~~~~~~~~   95 (450)
                      +.+|.| -|..  .++.+.|+|. .+|+||..+++.+.|++.|+||---.+..   .++..--+|.+...+         
T Consensus        21 mE~~vVtGIa~--~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d---------   89 (200)
T 4go7_X           21 MEDPILTGVAH--DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV---------   89 (200)
T ss_dssp             CCSCEEEEEEE--ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGG---------
T ss_pred             cccCcEEEEEc--cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhh---------
Confidence            455655 3322  3456788886 59999999999999999999998655432   234555567764322         


Q ss_pred             HHHHHHHhCcCcc-CCCCcceeeeccCCCceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 044728           96 SERIQQSLGPRAR-SFRSLRRSVGVQAALEHTTIELTG---RDRPGLLSEVFAVLSDLKCNVMGAE  157 (450)
Q Consensus        96 ~~~i~~~L~~~~~-~~~~~~r~v~~~~~~~~t~i~v~~---~DrpGLl~~i~~~L~~~glnI~~A~  157 (450)
                      .+...+.|..... +.   ...+  ..+.+...|.+++   +..||..+++..+|++.|+||.--.
T Consensus        90 ~~~~~~~l~~~~~~~~---~~~v--~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X           90 GPAAVEKLDSLRNEIG---FSQL--LYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             HHHHHHHHHTTHHHHC---CSEE--EEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             HHHHHHHHHHHHhhhc---eeeE--EEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence            1122222222110 00   0111  2344566777776   7899999999999999999998764

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.05  E-value=0.021  Score=51.79  Aligned_cols=66  Identities=12%  Similarity=0.278  Sum_probs=50.4

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-eeC-CeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhhh
Q 044728          125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVW-THN-SRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVLK  198 (450)
Q Consensus       125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~-t~~-~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l~  198 (450)
                      ...|+|...|+||.|++|+++|+.+|+||.+..+. |.+ +...-++.|...        +..+++|.+.|.++..
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--------e~~ieqL~kQL~KLid   96 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--------DKTIEQIEKQAYKLVE   96 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--------TTHHHHHHHHHTTSTT
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--------HHHHHHHHHHhcCcCc
Confidence            57899999999999999999999999999998886 444 445556666541        2356777777766543

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.01  E-value=0.022  Score=51.68  Aligned_cols=63  Identities=17%  Similarity=0.317  Sum_probs=48.8

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEe-ecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVT-TRG-SQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~-T~g-~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      ...|.|...|+||.|++|+.+|++.|+||.+..+. |.. +...-++.|...      +..+++|.++|.+
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~------e~~ieqL~kQL~K   93 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD------DKTIEQIEKQAYK   93 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC------TTHHHHHHHHHTT
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC------HHHHHHHHHHhcC
Confidence            36899999999999999999999999999998886 433 334445555433      3467888888887

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.84  E-value=0.027  Score=51.64  Aligned_cols=131  Identities=10%  Similarity=0.092  Sum_probs=80.8

Q ss_pred             CceEEEEEE-ecCCcChHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHH---HH
Q 044728          257 KGYTVVNLR-CPDRPKLLFDAVCTLTDMQYVVYHATVIAE---SPEAYQEYYIRHVDGNPISSEAERQRVINCLE---AA  329 (450)
Q Consensus       257 ~~~t~v~V~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t~---~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~---~~  329 (450)
                      .+.+.|+|. .+|+||+.+++...|++.|+||.---....   ++...-+|.+...         ..++..+.|.   ..
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~---------d~~~~~~~l~~~~~~  103 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD---------VGPAAVEKLDSLRNE  103 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG---------GHHHHHHHHHTTHHH
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh---------hHHHHHHHHHHHHhh
Confidence            456677776 589999999999999999999986433221   3455566777632         2222223332   22


Q ss_pred             Hhcc-C---CCceEEEEee---CCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHH
Q 044728          330 IKRR-T---SEGISLELCC---EDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKE  402 (450)
Q Consensus       330 L~~r-~---~~~t~iev~~---~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~  402 (450)
                      +... .   +.-..+.|.+   ..+||+.+++.++|++.||||....  |-  ...=.|.|...+.    +.-...|.++
T Consensus       104 ~~~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs--tS--Ei~IS~vV~~~d~----~~Av~aLH~~  175 (200)
T 4go7_X          104 IGFSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TS--EIRISVLCRDTEL----DKAVVALHEA  175 (200)
T ss_dssp             HCCSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE--EC--SSEEEEEEEGGGH----HHHHHHHHHH
T ss_pred             hceeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE--cc--CCEEEEEEeHHHH----HHHHHHHHHH
Confidence            2111 0   2234455544   5899999999999999999999875  31  2233455643321    1234566666


Q ss_pred             Hh
Q 044728          403 IG  404 (450)
Q Consensus       403 l~  404 (450)
                      |.
T Consensus       176 F~  177 (200)
T 4go7_X          176 FG  177 (200)
T ss_dssp             HT
T ss_pred             hC
Confidence            54

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.80  E-value=0.17  Score=51.44  Aligned_cols=109  Identities=16%  Similarity=0.143  Sum_probs=73.2

Q ss_pred             CeEEEEEE-cCCCcchHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCC
Q 044728           35 KATLIKVD-SANKRGSLLELVQVLNDLDLIIRRAYISSD---GEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSF  110 (450)
Q Consensus        35 ~~~~V~V~-~~DrpGLl~~i~~~L~~~glnI~~A~i~t~---~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~  110 (450)
                      +.+.|+|. .+|+||.++++.+.|++.|+||.--.+.|.   +|...-+|.|...+     .++..+.+++...+.. . 
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~-----~~~a~~~l~~~~~~~~-~-  335 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSD-----GRRAMEILKKLQVQGN-W-  335 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTT-----HHHHHHHHHHHHTTTT-C-
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechh-----HHHHHHHHHHHHHHcC-C-
Confidence            44667777 699999999999999999999986655443   45344457664321     1222333333222211 0 


Q ss_pred             CCcceeeeccCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEE
Q 044728          111 RSLRRSVGVQAALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNVMGA  156 (450)
Q Consensus       111 ~~~~r~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI~~A  156 (450)
                          ..+.  ...+...+.|++.   +.||.++++..+|++.|+||...
T Consensus       336 ----~~v~--~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  378 (421)
T 3ab4_A          336 ----TNVL--YDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  378 (421)
T ss_dssp             ----SEEE--EECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE
T ss_pred             ----ceEE--EeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE
Confidence                1122  2456778888884   89999999999999999999843

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.61  E-value=0.073  Score=54.25  Aligned_cols=104  Identities=11%  Similarity=0.105  Sum_probs=72.2

Q ss_pred             CceEEEEEE-ecCCcChHHHHHHHHHhCCceEEEEEEEec---CCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHH---H
Q 044728          257 KGYTVVNLR-CPDRPKLLFDAVCTLTDMQYVVYHATVIAE---SPEAYQEYYIRHVDGNPISSEAERQRVINCLEA---A  329 (450)
Q Consensus       257 ~~~t~v~V~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t~---~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~---~  329 (450)
                      .+.+.|+|. .+|+||.++++...|+++|+||..-...|.   .|...-+|.|...         ..++..+.|.+   .
T Consensus       262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~---------~~~~a~~~l~~~~~~  332 (421)
T 3ab4_A          262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS---------DGRRAMEILKKLQVQ  332 (421)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT---------THHHHHHHHHHHHTT
T ss_pred             CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech---------hHHHHHHHHHHHHHH
Confidence            356788888 699999999999999999999987654443   3445556777631         11222233333   2


Q ss_pred             Hhc-c---CCCceEEEEeeC---CCcchHHHHHHHHHHCCceEEEEE
Q 044728          330 IKR-R---TSEGISLELCCE---DRAGLLSDVTRIFRENGLSVTRAE  369 (450)
Q Consensus       330 L~~-r---~~~~t~iev~~~---DrpGLL~~It~~l~~~gi~I~~Ak  369 (450)
                      +.. .   ...-.++.|.+.   ++||+++++.++|++.||||....
T Consensus       333 ~~~~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is  379 (421)
T 3ab4_A          333 GNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS  379 (421)
T ss_dssp             TTCSEEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE
T ss_pred             cCCceEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence            211 0   122356788876   899999999999999999999553

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.43  E-value=0.057  Score=47.45  Aligned_cols=59  Identities=19%  Similarity=0.252  Sum_probs=44.6

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Q 044728          127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLY  195 (450)
Q Consensus       127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~  195 (450)
                      .|+|.+.||+|+|++|+.+|+.+++||..+.+.+. |.    +++.-+     ..+.+.+..+...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~----i~~~~~-----~~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR----IYLNFA-----ELEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE----EEEEEC-----CCCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE----EEEEEE-----eCCHHHHHHHHHHHHc
Confidence            47899999999999999999999999999999765 32    334331     1134566777777654

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.25  E-value=0.028  Score=51.81  Aligned_cols=49  Identities=10%  Similarity=0.209  Sum_probs=36.4

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-----CeEEEEEEEee
Q 044728          125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-----SRMASVVYITS  173 (450)
Q Consensus       125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-----~~~~d~f~V~~  173 (450)
                      ...|.|.+.||||+|++|+.+|+++++||...+..+..     +.+.-.+.+.+
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d   57 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG   57 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECS
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECC
Confidence            46789999999999999999999999999999998853     34555555544

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.03  E-value=0.038  Score=50.97  Aligned_cols=46  Identities=17%  Similarity=0.054  Sum_probs=35.0

Q ss_pred             eEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEec-----CCeEEEEEE
Q 044728           36 ATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSD-----GEWFMDVFH   81 (450)
Q Consensus        36 ~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-----~g~~~d~F~   81 (450)
                      ...|.|.+.||||+|++|+.+|++.+.||...++.++     +|.+.-.+-
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IE   54 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFE   54 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEE
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEE
Confidence            3688999999999999999999999999999999874     566654333

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=92.85  E-value=0.25  Score=47.55  Aligned_cols=67  Identities=15%  Similarity=0.219  Sum_probs=48.7

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      .|.|-+...|+||-|+++-..|+.+|||+.+....-.. ..-+-.|||. -+|..-+ ...++.-++|..
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD-~eg~~~d-~~v~~aL~~L~~  267 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYAD-FIGHRED-QNVHNALENLRE  267 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEE-EESCTTS-HHHHHHHHHHHT
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEE-EecCCCc-HHHHHHHHHHHH
Confidence            45666666799999999999999999999999987655 4478899994 4465533 333444444443

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=91.76  E-value=0.39  Score=46.88  Aligned_cols=90  Identities=14%  Similarity=0.230  Sum_probs=60.7

Q ss_pred             hCC-ceEEEEEEEecC-CeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhccCCCceEEEEeeC-CCcchHHHHHHHH
Q 044728          282 DMQ-YVVYHATVIAES-PEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCCE-DRAGLLSDVTRIF  358 (450)
Q Consensus       282 ~~g-lnI~~A~I~t~~-g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r~~~~t~iev~~~-DrpGLL~~It~~l  358 (450)
                      ..| ++|+.-.|.... ++.  .|+|..........                 .....|.|-+..+ |+||-|+++-..|
T Consensus       163 ~Yg~L~il~~~I~D~~~N~T--RFlvl~~~~~~~~~-----------------~~~~kTSl~f~~~~~~pGaL~~~L~~F  223 (313)
T 3mwb_A          163 EQPGLNVLAEDIGDNPDAVT--RFILVSRPGALPER-----------------TGADKTTVVVPLPEDHPGALMEILDQF  223 (313)
T ss_dssp             HCTTCEEEESCCCSCTTCEE--EEEEEECSCCCCCC-----------------CSSEEEEEEEECSSCCTTHHHHHHHHH
T ss_pred             HcCChhhhhhcccCCCccee--EEEEEecCCCCCCC-----------------CCCCeEEEEEEeCCCCCCHHHHHHHHH
Confidence            467 888887776643 333  36666433221100                 0112467777775 9999999999999


Q ss_pred             HHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCC
Q 044728          359 RENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPV  391 (450)
Q Consensus       359 ~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l  391 (450)
                      +.+|||+.+....-.. ..-+-.|||. -+|..-
T Consensus       224 a~~gINLtkIESRP~~~~~~~Y~FfiD-~eg~~~  256 (313)
T 3mwb_A          224 ASRGVNLSRIESRPTGQYLGHYFFSID-ADGHAT  256 (313)
T ss_dssp             HTTTCCEEEEEEEECSSSTTSEEEEEE-EESCTT
T ss_pred             HHCCccEEEEEEeecCCCCccEEEEEE-EeCCCC
Confidence            9999999999887554 4477899994 446553

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=91.02  E-value=0.39  Score=48.61  Aligned_cols=48  Identities=23%  Similarity=0.364  Sum_probs=42.6

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEe
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVD  385 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~  385 (450)
                      ..|-+.-.|+||.+..|+.+|+++||||......+.|+.+.-++.+..
T Consensus       332 ~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~  379 (404)
T 1sc6_A          332 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEA  379 (404)
T ss_dssp             EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEEC
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCC
Confidence            567788899999999999999999999999999998888887777743

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=91.00  E-value=0.88  Score=44.67  Aligned_cols=46  Identities=22%  Similarity=0.374  Sum_probs=38.0

Q ss_pred             CCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCC
Q 044728          346 DRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPVK  392 (450)
Q Consensus       346 DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l~  392 (450)
                      |+||-|+++-..|+.+|||+.+....... ..-+-.|||. -+|..-+
T Consensus       217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD-~eg~~~d  263 (329)
T 3luy_A          217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVT-LDAAPWE  263 (329)
T ss_dssp             CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEE-ESSCTTS
T ss_pred             CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEE-EeCCcCC
Confidence            89999999999999999999999987554 4578899984 4566543

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=90.65  E-value=0.95  Score=43.11  Aligned_cols=97  Identities=13%  Similarity=0.190  Sum_probs=64.6

Q ss_pred             hCCceEEEEEEEecC-CeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhccCCCceEEEEee---CCCcchHHHHHHH
Q 044728          282 DMQYVVYHATVIAES-PEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKRRTSEGISLELCC---EDRAGLLSDVTRI  357 (450)
Q Consensus       282 ~~glnI~~A~I~t~~-g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~r~~~~t~iev~~---~DrpGLL~~It~~  357 (450)
                      ..|++|+.-.|.... ++.  .|+|..... +..                    ...|.|-+..   .|+||-|+++-..
T Consensus       153 ~ygL~il~~~I~D~~~N~T--RF~vl~~~~-~~~--------------------~~ktsl~f~~~~~~~~pGaL~~~L~~  209 (267)
T 2qmw_A          153 AYGFTPIDTHIEDYPHNVT--RFLVIKNQQ-QFD--------------------QNATSLMFLITPMHDKPGLLASVLNT  209 (267)
T ss_dssp             GGTCCEEEECCCSCSCCEE--EEEEEESCC-CCC--------------------SSCSEEEEEEEESSCCTTHHHHHHHH
T ss_pred             HCCCcEeeccccCCCCCce--EEEEEecCC-CCC--------------------CCeEEEEEEcCCCCCCcChHHHHHHH
Confidence            348888888776653 333  366664322 110                    1245666677   8999999999999


Q ss_pred             HHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHh
Q 044728          358 FRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPVKSETIESVRKEIG  404 (450)
Q Consensus       358 l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~  404 (450)
                      |+.+|||+.+....... ..-+-.|||.-.  . ..+...++.-++|.
T Consensus       210 Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e--~-~~d~~v~~aL~~L~  254 (267)
T 2qmw_A          210 FALFNINLSWIESRPLKTQLGMYRFFVQAD--S-AITTDIKKVIAILE  254 (267)
T ss_dssp             HHTTTCCEEEEEEEECSSSTTCEEEEEEES--C-CSCHHHHHHHHHHH
T ss_pred             HHHcCCCeeEEEEeecCCCCccEEEEEEEe--c-CCcHHHHHHHHHHH
Confidence            99999999999987654 447889999655  3 23344444444443

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=90.45  E-value=1  Score=47.14  Aligned_cols=62  Identities=19%  Similarity=0.398  Sum_probs=47.9

Q ss_pred             CceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec--CceeeeEEEEEeCCCCCCChHHHHHHHH
Q 044728          336 EGISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR--GSQAVNVFYVVDASGNPVKSETIESVRK  401 (450)
Q Consensus       336 ~~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~--g~~a~D~F~v~~~~g~~l~~~~~~~L~~  401 (450)
                      ..+.+-+.-.|+||.+..|+..|.++||||...++.-.  |+.+.-++.+    ..+++++.+++|++
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v----d~~~~~~~l~~l~~  516 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL----DQDVPDDVRTAIAA  516 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE----SSCCCHHHHHHHHH
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE----CCCCCHHHHHHHhc
Confidence            45788899999999999999999999999999999754  5556656655    23455555666654

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=90.40  E-value=0.78  Score=48.01  Aligned_cols=64  Identities=16%  Similarity=0.228  Sum_probs=49.6

Q ss_pred             CCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCCHHHHHHHH
Q 044728          121 AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITSEATGLPIDDPDTLAKIK  190 (450)
Q Consensus       121 ~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~~~~g~~i~~~~~~~~l~  190 (450)
                      ..+....+.+.-.|+||.+..|+..|.++|+||.+.++...  ++.+.-++.+.+     ++ +++.+++|+
T Consensus       450 ~~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~-----~~-~~~~l~~l~  515 (529)
T 1ygy_A          450 LRAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ-----DV-PDDVRTAIA  515 (529)
T ss_dssp             EESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS-----CC-CHHHHHHHH
T ss_pred             ecCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC-----CC-CHHHHHHHh
Confidence            45567888999999999999999999999999999999874  555666666654     24 344555554

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=88.91  E-value=0.9  Score=46.53  Aligned_cols=120  Identities=15%  Similarity=0.234  Sum_probs=73.8

Q ss_pred             eEEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCCC
Q 044728           36 ATLIKVDS---ANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFRS  112 (450)
Q Consensus        36 ~~~V~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~~  112 (450)
                      .+.|+|..   ++.||..+++..+|++.|++|.-.  .+....  -+|.|...+-.+ ...++.++++..+...      
T Consensus       298 ~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~~~~~--is~~V~~~d~~~-~~~~~~~el~~~~~~~------  366 (446)
T 3tvi_A          298 FTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PSGVDS--VSLVIEDCKLDG-KCDKIIEEIKKQCNPD------  366 (446)
T ss_dssp             EEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CEETTE--EEEEEEHHHHTT-THHHHHHHHHHHSCCS------
T ss_pred             EEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ecCCCE--EEEEEecchHHH-HHHHHHHHHHHhcCCC------
Confidence            45677764   699999999999999999999743  221111  236664432111 0122334444333211      


Q ss_pred             cceeeeccCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728          113 LRRSVGVQAALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS  173 (450)
Q Consensus       113 ~~r~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~  173 (450)
                         .+.  ...+...|.|+|.   ..||..+++..+|++.|+||....--|.  ...-.|.|..
T Consensus       367 ---~v~--v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtS--ei~Is~vV~~  423 (446)
T 3tvi_A          367 ---SIE--IHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSS--EINVIVGVET  423 (446)
T ss_dssp             ---EEE--EEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSC--TTEEEEEEEG
T ss_pred             ---cEE--EeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCC--CceEEEEEcH
Confidence               111  2456788899875   6899999999999999999986543222  2333455544

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=87.65  E-value=2.2  Score=43.60  Aligned_cols=117  Identities=9%  Similarity=0.093  Sum_probs=74.0

Q ss_pred             ceEEEEEEe---cCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc-c
Q 044728          258 GYTVVNLRC---PDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEAAIKR-R  333 (450)
Q Consensus       258 ~~t~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~~L~~-r  333 (450)
                      +.+.|+|.+   ++.||..+++...|+++|++|..-  .+..  .--+|.|...+-..     ...++.+.|...+.. .
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~~~--~~is~~V~~~d~~~-----~~~~~~~el~~~~~~~~  367 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PSGV--DSVSLVIEDCKLDG-----KCDKIIEEIKKQCNPDS  367 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CEET--TEEEEEEEHHHHTT-----THHHHHHHHHHHSCCSE
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ecCC--CEEEEEEecchHHH-----HHHHHHHHHHHhcCCCc
Confidence            567788885   699999999999999999999753  2211  12346665321100     123333444433211 0


Q ss_pred             C---CCceEEEEeeC---CCcchHHHHHHHHHHCCceEEEEEEeecCce-eeeEEEEEeC
Q 044728          334 T---SEGISLELCCE---DRAGLLSDVTRIFRENGLSVTRAEVTTRGSQ-AVNVFYVVDA  386 (450)
Q Consensus       334 ~---~~~t~iev~~~---DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~-a~D~F~v~~~  386 (450)
                      .   ..-.+|.|.+.   .+||+.+++.++|++.||||....   +|.. ..=.|.|...
T Consensus       368 v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs---qgtSei~Is~vV~~~  424 (446)
T 3tvi_A          368 IEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMID---QGSSEINVIVGVETV  424 (446)
T ss_dssp             EEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE---ECSCTTEEEEEEEGG
T ss_pred             EEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE---ecCCCceEEEEEcHH
Confidence            0   12357888876   589999999999999999998764   3332 2234556433

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=87.33  E-value=1.6  Score=44.08  Aligned_cols=48  Identities=10%  Similarity=0.007  Sum_probs=42.2

Q ss_pred             eEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEe
Q 044728          259 YTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIR  306 (450)
Q Consensus       259 ~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~  306 (450)
                      ...+.+.-.|+||.+.+++.+|+++|+||...+..+.++.++-++.|.
T Consensus       331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD  378 (404)
T 1sc6_A          331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIE  378 (404)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEE
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcC
Confidence            446888899999999999999999999999999999888887666665

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=86.87  E-value=1.1  Score=45.56  Aligned_cols=62  Identities=23%  Similarity=0.306  Sum_probs=47.9

Q ss_pred             cCCCCEEEEeecCCCCeEEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCC
Q 044728           20 RMNPPRVTVDNTSNRKATLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQN   86 (450)
Q Consensus        20 ~~~~p~V~i~~~~~~~~~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~   86 (450)
                      .++.|.|....  ..+...|.+.-+|.||.+..|..+|.+.|+||.+-.-.|.+++++   .+.|-+
T Consensus       329 ~Vn~p~~~~~~--~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y---~~~d~~  390 (416)
T 3k5p_A          329 AVNFPQVQLPP--RPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGY---LVMEAD  390 (416)
T ss_dssp             BSSSCCCCCCC--CSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEE---EEEEEC
T ss_pred             eeeCCCcCCCC--CCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEE---EEEEec
Confidence            44556665432  235689999999999999999999999999999777778777773   445544

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=85.89  E-value=3.4  Score=41.77  Aligned_cols=52  Identities=19%  Similarity=0.187  Sum_probs=43.4

Q ss_pred             CCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEe
Q 044728          121 AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYIT  172 (450)
Q Consensus       121 ~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~  172 (450)
                      ...+...|.+.-.|.||.|..|..+|+++|+||..-...|.++.+--+.-|.
T Consensus       339 ~~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~  390 (416)
T 3k5p_A          339 PRPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEAD  390 (416)
T ss_dssp             CCSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred             CCCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEec
Confidence            3456789999999999999999999999999999999988776654444443

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=85.29  E-value=1.7  Score=44.48  Aligned_cols=50  Identities=26%  Similarity=0.475  Sum_probs=35.6

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec--CceeeeEEEEEeC
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR--GSQAVNVFYVVDA  386 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~--g~~a~D~F~v~~~  386 (450)
                      .|.+.+...|+||.|++|+.+|.++||+|++..=.-.  ++....+..+|..
T Consensus       359 ~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~  410 (444)
T 3mtj_A          359 AYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHV  410 (444)
T ss_dssp             EEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECS
T ss_pred             eeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEecc
Confidence            4789999999999999999999999999998753321  1112345556554

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=85.23  E-value=3.6  Score=42.83  Aligned_cols=137  Identities=14%  Similarity=0.150  Sum_probs=83.9

Q ss_pred             CeEEEEEEc---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCC-chHHHHHHHHHhCcCccCC
Q 044728           35 KATLIKVDS---ANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLS-EDDVSERIQQSLGPRARSF  110 (450)
Q Consensus        35 ~~~~V~V~~---~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~-~~~~~~~i~~~L~~~~~~~  110 (450)
                      +.+.|+|..   +++||..+++..+|++.|++|.--. +.....   +|.|...+..+.. ..+.++++.+.|....   
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~-sse~si---s~~v~~~~~~~~~~~~~~l~~~~~el~~~~---  412 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA-TSEVSI---SLTLDPSKLWSRELIQQELDHVVEELEKIA---  412 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE-EETTEE---EEEECCGGGSSSCCCHHHHHHHHHHHTTTS---
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE-eCCCeE---EEEEechHhhhhhHHHHHHHHHHHHhCCCC---
Confidence            446777774   7899999999999999999998552 222222   3555332211110 1234455555554311   


Q ss_pred             CCcceeeeccCCCceEEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEeecCCCCCCCCHHHHH
Q 044728          111 RSLRRSVGVQAALEHTTIELTGR--DRPGLLSEVFAVLSDLKCNVMGAEVWTHNS-RMASVVYITSEATGLPIDDPDTLA  187 (450)
Q Consensus       111 ~~~~r~v~~~~~~~~t~i~v~~~--DrpGLl~~i~~~L~~~glnI~~A~i~t~~~-~~~d~f~V~~~~~g~~i~~~~~~~  187 (450)
                           .+.  -..+...|.|++.  ..||..+++..+|++.|+||....   .|. ...-.|.|..          +..+
T Consensus       413 -----~v~--~~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIs---qGsSei~Is~vV~~----------~d~~  472 (510)
T 2cdq_A          413 -----VVN--LLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMIS---QGASKVNISFIVNE----------AEAE  472 (510)
T ss_dssp             -----EEE--EEEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEE---ECTTCSEEEEEEEH----------HHHH
T ss_pred             -----eEE--EeCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEE---ecCCcceEEEEEeH----------HHHH
Confidence                 121  2445777888886  778999999999999999997653   222 2334455554          2334


Q ss_pred             HHHHHHHHhhh
Q 044728          188 KIKRLLLYVLK  198 (450)
Q Consensus       188 ~l~~~L~~~l~  198 (450)
                      +--+.|++.+-
T Consensus       473 ~Av~aLH~~f~  483 (510)
T 2cdq_A          473 GCVQALHKSFF  483 (510)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            44455666554

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=83.23  E-value=0.84  Score=39.58  Aligned_cols=113  Identities=13%  Similarity=0.102  Sum_probs=67.8

Q ss_pred             CeEEEEEE---cCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEEeCCCCCCCchHHHHHHHHHhCcCccCCC
Q 044728           35 KATLIKVD---SANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEDDVSERIQQSLGPRARSFR  111 (450)
Q Consensus        35 ~~~~V~V~---~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V~~~~g~~~~~~~~~~~i~~~L~~~~~~~~  111 (450)
                      +.+.|+|.   .+++||..+++..+|++.|+||.--.  +....  -+|.|.+.+        ..+++.+.|....    
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~--~s~~~--Isf~v~~~~--------~~~~il~~l~~~~----   80 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVA--TSEVG--VSLTIDNDK--------NLPDIVRALSDIG----   80 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEE--CCSSE--EEEEESCCT--------THHHHHHHHTTTE----
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEE--ecCCE--EEEEECChH--------HHHHHHHHHhccC----
Confidence            45778877   37899999999999999999996332  22221  236653221        1223333333211    


Q ss_pred             CcceeeeccCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728          112 SLRRSVGVQAALEHTTIELTGR---DRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS  173 (450)
Q Consensus       112 ~~~r~v~~~~~~~~t~i~v~~~---DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~  173 (450)
                          .+.  ...+...|.++|.   ++||..+++..+|+  |+||....-.+.  ...-.|.|..
T Consensus        81 ----~v~--~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~S--e~~is~vv~~  135 (157)
T 3mah_A           81 ----DVT--VDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGS--NYNVSVLVKA  135 (157)
T ss_dssp             ----EEE--EEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSS--SSCEEEEEEG
T ss_pred             ----eEE--EeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCC--CCEEEEEEcH
Confidence                122  2345678888874   78999999999999  999876432221  2334455554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	450
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	8e-06
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	0.002
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	2e-05
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	2e-04
d1zpva1	83	d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Strepto	0.003

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 41.7 bits (98), Expect = 8e-06
 Identities = 7/65 (10%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 128 IELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLA 187
           + +   ++ G+L ++  ++++   N+  A+ +                     D    L 
Sbjct: 4   LRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGK-ALIYFEIEGGDFEKILE 62

Query: 188 KIKRL 192
           ++K  
Sbjct: 63  RVKTF 67

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 35.1 bits (81), Expect = 0.002
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVK-SETIE 397
            L +  E++ G+L D+T I  E G ++T A+             ++          + +E
Sbjct: 3   GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILE 62

Query: 398 SVRK 401
            V+ 
Sbjct: 63  RVKT 66

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 124 EHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDP 183
           +H  I   G DRPG+ +EV  +++   CN++ + +         ++ I+          P
Sbjct: 4   QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG--------SP 55

Query: 184 DTLAKIKRLL 193
             + +++  L
Sbjct: 56  SNITRVETTL 65

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 10/66 (15%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 344 CEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKS--ETIESVRK 401
             DR G+ ++V R+  + G ++  + +   G +   +  ++  S + +     T+  + +
Sbjct: 12  GTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFT-LLMLISGSPSNITRVETTLPLLGQ 70

Query: 402 EIGLTI 407
           +  L  
Sbjct: 71  QHDLIT 76

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 34.7 bits (80), Expect = 0.003
 Identities = 7/27 (25%), Positives = 17/27 (62%)

Query: 128 IELTGRDRPGLLSEVFAVLSDLKCNVM 154
           I + G+D+ G+++ V   +++L  N+ 
Sbjct: 5   ITVVGKDKSGIVAGVSGKIAELGLNID 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	450
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.68
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.63
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.49
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.45
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.19
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.91
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.8
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.73
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.58
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.47
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.4
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.4
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.35
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.13
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.08
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.07
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.04
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.99
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.92
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.84
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.81
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.47
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	95.92
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	95.33
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	90.53
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	90.35
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	83.83
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	81.34

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.68  E-value=7.3e-08  Score=75.02  Aligned_cols=67  Identities=21%  Similarity=0.491  Sum_probs=57.7

Q ss_pred             CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728          123 LEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL  197 (450)
Q Consensus       123 ~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l  197 (450)
                      .++++|++.|+||||++++++++|+++|+||.+++..+.++.....+.|.-+        +..++++++.|.++-
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~--------~~~~~~l~~~L~~l~   69 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPLLG   69 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC--------cccHHHHHHHHHHHH
Confidence            5688999999999999999999999999999999999999999888888762        345677888776543

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.63  E-value=1.1e-07  Score=73.87  Aligned_cols=65  Identities=17%  Similarity=0.101  Sum_probs=54.7

Q ss_pred             CceEEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHH
Q 044728          257 KGYTVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEA  328 (450)
Q Consensus       257 ~~~t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  328 (450)
                      ..+.+|+|.|+||||++++++++|+++|+||.+++..+.++.+.-.+.|.-+       +...++|++.|.+
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~-------~~~~~~l~~~L~~   67 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-------PSNITRVETTLPL   67 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-------HHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC-------cccHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999988877777631       2356777777754

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.49  E-value=4.1e-07  Score=70.07  Aligned_cols=63  Identities=6%  Similarity=0.044  Sum_probs=50.0

Q ss_pred             EEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEecCCCCCCCcHHHHHHHHHHHHH
Q 044728          260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEAYQEYYIRHVDGNPISSEAERQRVINCLEA  328 (450)
Q Consensus       260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~F~V~~~~g~~~~~~~~~~~l~~~L~~  328 (450)
                      .+|+|.|+||||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+.+.      ..++|+++|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~------~~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQ------DFTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCC------CHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCC------CHHHHHHHHHH
Confidence            4799999999999999999999999999999998888877766766644322      23456666643

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.45  E-value=6.7e-07  Score=68.84  Aligned_cols=64  Identities=14%  Similarity=0.274  Sum_probs=52.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHh
Q 044728          126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYV  196 (450)
Q Consensus       126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~  196 (450)
                      ++|++.|+||||+++.++++|+++|+||.+..-++.++.....+.+.-+ .+.   +   .+++++.|...
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~-~~~---~---~~~l~~~l~~l   66 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD-EKQ---D---FTYLRNEFEAF   66 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-SCC---C---HHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEe-cCC---C---HHHHHHHHHHH
Confidence            6899999999999999999999999999999999988888887777762 222   2   35577777653

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.19  E-value=1.4e-06  Score=68.48  Aligned_cols=67  Identities=13%  Similarity=0.228  Sum_probs=46.5

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCc----eeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGS----QAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~----~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      ..++|.++|||||+++||++|+++|+||..+.-.|+..    ...+.|.++-....|-+ ...++|+++|..
T Consensus         7 v~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~-~~~~~l~~~l~~   77 (93)
T d1u8sa2           7 VEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSG-CNLMQLQEEFDA   77 (93)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTT-SCHHHHHHHHHH
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCcc-ccHHHHHHHHHH
Confidence            35678899999999999999999999999999888654    34557776554333321 234566665553

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.91  E-value=1.2e-05  Score=62.86  Aligned_cols=37  Identities=11%  Similarity=0.146  Sum_probs=33.7

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee
Q 044728          125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH  161 (450)
Q Consensus       125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~  161 (450)
                      ...|+|.|+||||++++|+++|+++|+||.+.+..+.
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~   42 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTI   42 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccc
Confidence            5677888999999999999999999999999988774

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.80  E-value=4.7e-05  Score=56.43  Aligned_cols=47  Identities=17%  Similarity=0.225  Sum_probs=43.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 044728          127 TIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMASVVYITS  173 (450)
Q Consensus       127 ~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d~f~V~~  173 (450)
                      +|.|..+|+||-|++++++|.++|+||++.+++..++.+.-+|.+.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            57888999999999999999999999999999998888888888866

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.73  E-value=3.4e-05  Score=57.18  Aligned_cols=47  Identities=15%  Similarity=0.222  Sum_probs=42.9

Q ss_pred             EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEe
Q 044728          339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVD  385 (450)
Q Consensus       339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~  385 (450)
                      +|.|.-+|+||-|++++++|.+.||||++..+...++.+.-+|.+.|
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            57899999999999999999999999999999988899988888743

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.58  E-value=0.00022  Score=53.58  Aligned_cols=61  Identities=20%  Similarity=0.397  Sum_probs=45.6

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeec--CceeeeEEEEEeCCCCCCChHHHHHHHH
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTR--GSQAVNVFYVVDASGNPVKSETIESVRK  401 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~--g~~a~D~F~v~~~~g~~l~~~~~~~L~~  401 (450)
                      ++.+-+.-.|+||+|++|+.+|++.|+||....+.+.  |+.+.-++-+   + .++.++-+++|++
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v---D-~~~~~~vl~~I~~   65 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL---D-QDVPDDVRTAIAA   65 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE---S-SCCCHHHHHHHHH
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc---C-CCccHHHHHHHHc
Confidence            5688899999999999999999999999999998765  4555545544   2 3455444455544

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.47  E-value=0.00019  Score=52.80  Aligned_cols=45  Identities=16%  Similarity=0.305  Sum_probs=39.9

Q ss_pred             EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEE
Q 044728          339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYV  383 (450)
Q Consensus       339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v  383 (450)
                      .|.|...||||.|++|+.+|++.|+||++..+....+.+.-.|-+
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv   49 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV   49 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEE
Confidence            478999999999999999999999999999998777777666655

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.40  E-value=0.00052  Score=51.47  Aligned_cols=48  Identities=17%  Similarity=0.272  Sum_probs=40.5

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEE
Q 044728          124 EHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYI  171 (450)
Q Consensus       124 ~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V  171 (450)
                      +.+.+.+.-.|+||.++.|+.+|+++|+||...++.+.  ++.+.-++.+
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v   51 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL   51 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc
Confidence            46788899999999999999999999999999999874  5556555555

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.40  E-value=0.00012  Score=55.02  Aligned_cols=61  Identities=23%  Similarity=0.371  Sum_probs=40.9

Q ss_pred             EEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ce--eeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          339 SLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQ--AVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       339 ~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~--a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      -|.|.+.||||+|++|+.+|+++++||.+....+.. +.  ..-.|++.+..+      ++++|-+.|..
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~------~l~~ll~kL~~   66 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG------DFEKILERVKT   66 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS------CHHHHHHHHHT
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcc------cHHHHHHHHHc
Confidence            478999999999999999999999999999877642 23  445666655431      24556565553

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.35  E-value=0.00017  Score=53.12  Aligned_cols=46  Identities=20%  Similarity=0.218  Sum_probs=39.6

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEE
Q 044728           37 TLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISSDGEWFMDVFHV   82 (450)
Q Consensus        37 ~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~g~~~d~F~V   82 (450)
                      -++.|+..||||.|++++++|.+.|+||..-.+....++.+-.|.|
T Consensus         4 ~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv   49 (70)
T d2f06a2           4 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV   49 (70)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEE
Confidence            3799999999999999999999999999999988655666656665

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.13  E-value=0.00015  Score=54.42  Aligned_cols=39  Identities=18%  Similarity=0.072  Sum_probs=30.7

Q ss_pred             EEEEEEcCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCe
Q 044728           37 TLIKVDSANKRGSLLELVQVLNDLDLIIRRAYISS-DGEW   75 (450)
Q Consensus        37 ~~V~V~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~~g~   75 (450)
                      .-|.|.+.||||+|++++.++++.|.||...+..+ .+|.
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~   41 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGE   41 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSST
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCe
Confidence            35889999999999999999999999999999987 4554

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.08  E-value=0.0012  Score=49.10  Aligned_cols=64  Identities=17%  Similarity=0.182  Sum_probs=49.3

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-e-CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728          126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWT-H-NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL  197 (450)
Q Consensus       126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t-~-~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l  197 (450)
                      ..|.+...|+||.|++|+++|+..|+||.+..+.. . .+...-++.+..        +++.++++.+.|.+..
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~--------~~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC--------CHHHHHHHHHHHhCCc
Confidence            46889999999999999999999999999999874 3 344444555544        3467788888887654

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.07  E-value=0.0016  Score=48.64  Aligned_cols=65  Identities=14%  Similarity=0.268  Sum_probs=47.3

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728          125 HTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH--NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL  197 (450)
Q Consensus       125 ~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~--~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l  197 (450)
                      ...|.+...|+||+|++|+++|+..|+||.+..+...  .+...-++.+..        +++..+++.+.|.+..
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g--------~~~~i~qi~kQl~Kli   69 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG--------DDKTIEQIEKQAYKLV   69 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE--------CTTHHHHHHHHHTTST
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEc--------CHHHHHHHHHHHhCCc
Confidence            4678999999999999999999999999999988754  233334444443        1235577777776543

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.04  E-value=0.0011  Score=49.46  Aligned_cols=65  Identities=15%  Similarity=0.356  Sum_probs=48.8

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      .+.|.+...|+||+|.+|+..|++.|+||++..+........-.+-+.-. |   ++...+++.+.|.+
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~-g---~~~~i~qi~kQl~K   67 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK-G---DDKTIEQIEKQAYK   67 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE-E---CTTHHHHHHHHHTT
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEE-c---CHHHHHHHHHHHhC
Confidence            36789999999999999999999999999999988655554444433322 1   13456788777776

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.0029  Score=47.85  Aligned_cols=44  Identities=14%  Similarity=0.186  Sum_probs=37.3

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCeEEE
Q 044728          124 EHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSRMAS  167 (450)
Q Consensus       124 ~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~~~d  167 (450)
                      ....+.+.-.|+||.+++|+++|+++|+||.+....+.++....
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a   53 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYV   53 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEE
Confidence            45688888999999999999999999999999988886544433

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.0016  Score=48.31  Aligned_cols=65  Identities=20%  Similarity=0.302  Sum_probs=47.5

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCCHHHHHHHHHHHHHhh
Q 044728          126 TTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTH-NSRMASVVYITSEATGLPIDDPDTLAKIKRLLLYVL  197 (450)
Q Consensus       126 t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~-~~~~~d~f~V~~~~~g~~i~~~~~~~~l~~~L~~~l  197 (450)
                      ..+.+...|+||.|++++++|+..|+||.+..+... ......+-.+..   |    +++.++++.+.|.+..
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~---~----~~~~i~qi~kQL~Kli   67 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---G----DEKVLEQIEKQLHKLV   67 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---S----CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE---C----CHHHHHHHHHHHhCCC
Confidence            468889999999999999999999999999998743 333332222333   2    3566788888887654

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.0016  Score=48.43  Aligned_cols=64  Identities=19%  Similarity=0.364  Sum_probs=47.8

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      ..+.+...|+||+|++|+..|++.|+||++..+.-......-.|-+... |   ++...+++.+.|.+
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~-~---~~~~i~qi~kQL~K   65 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G---DEKVLEQIEKQLHK   65 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S---CHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE-C---CHHHHHHHHHHHhC
Confidence            3688899999999999999999999999999988444444434444332 1   24567788887776

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.81  E-value=0.0016  Score=48.45  Aligned_cols=64  Identities=23%  Similarity=0.404  Sum_probs=46.5

Q ss_pred             eEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          338 ISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       338 t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      ..|.+...|+||+|++|+..|++.|+||++..+.-......-.+-+.-. |   ++...+++.+.|.+
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~-~---~~~~i~qi~kQL~K   66 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN-G---PDEIVEQITKQLNK   66 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE-E---CHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEE-C---CHHHHHHHHHHHhC
Confidence            4688999999999999999999999999999987443333323333222 1   14567788887776

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.012  Score=44.18  Aligned_cols=40  Identities=8%  Similarity=-0.003  Sum_probs=34.4

Q ss_pred             EEEEEEecCCcChHHHHHHHHHhCCceEEEEEEEecCCeE
Q 044728          260 TVVNLRCPDRPKLLFDAVCTLTDMQYVVYHATVIAESPEA  299 (450)
Q Consensus       260 t~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~  299 (450)
                      ..+.+.-.|+||.+++|++.|+++|+||.+....+.++..
T Consensus        12 ~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~   51 (84)
T d1sc6a3          12 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMG   51 (84)
T ss_dssp             EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEE
T ss_pred             eEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCc
Confidence            3577778999999999999999999999999888875433

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.92  E-value=0.018  Score=42.91  Aligned_cols=60  Identities=18%  Similarity=0.227  Sum_probs=44.1

Q ss_pred             eeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHhh
Q 044728          343 CCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPVKSETIESVRKEIGL  405 (450)
Q Consensus       343 ~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~~  405 (450)
                      ...|+||-|+++-..|+++|||+......-.. ..-+-.|||.-. |.. ++ ..+.+-++|..
T Consensus         8 ~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~-g~~-~~-~~~~~l~~L~~   68 (80)
T d2qmwa2           8 PMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SAI-TT-DIKKVIAILET   68 (80)
T ss_dssp             ESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CCS-CH-HHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEe-cCC-cH-HHHHHHHHHHH
Confidence            34699999999999999999999999877554 447789999654 643 33 34444445443

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.33  E-value=0.01  Score=46.02  Aligned_cols=65  Identities=23%  Similarity=0.380  Sum_probs=48.8

Q ss_pred             ceEEEEeeCCCcchHHHHHHHHHHCCceEEEEEEeecC-ceeeeEEEEEeCCCCCCChHHHHHHHHHHh
Q 044728          337 GISLELCCEDRAGLLSDVTRIFRENGLSVTRAEVTTRG-SQAVNVFYVVDASGNPVKSETIESVRKEIG  404 (450)
Q Consensus       337 ~t~iev~~~DrpGLL~~It~~l~~~gi~I~~AkI~T~g-~~a~D~F~v~~~~g~~l~~~~~~~L~~~l~  404 (450)
                      .|.|-+...|+||-|+++-..|+++|||+......... ....-.|||. -+|..  +..++.+-+.|.
T Consensus        16 ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id-~eg~~--~~~i~~~l~~L~   81 (97)
T d1phza1          16 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTY-LDKRT--KPVLGSIIKSLR   81 (97)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEEC-BCGGG--HHHHHHHHHHHH
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEE-cccCC--hHHHHHHHHHHH
Confidence            57888888999999999999999999999998877544 4467789994 45652  334444444444

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.53  E-value=0.54  Score=34.36  Aligned_cols=45  Identities=18%  Similarity=0.251  Sum_probs=35.8

Q ss_pred             EEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeCCe-EEEEEEEee
Q 044728          129 ELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHNSR-MASVVYITS  173 (450)
Q Consensus       129 ~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~~~-~~d~f~V~~  173 (450)
                      .+...|+||.|+++-..|+++|+|+..-......+. ..=.|+|.-
T Consensus         6 i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~   51 (80)
T d2qmwa2           6 ITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA   51 (80)
T ss_dssp             EEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred             EEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence            334469999999999999999999998887765444 455788876

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.35  E-value=0.24  Score=37.82  Aligned_cols=53  Identities=9%  Similarity=0.128  Sum_probs=42.3

Q ss_pred             CCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEee
Q 044728          121 AALEHTTIELTGRDRPGLLSEVFAVLSDLKCNVMGAEVWTHN-SRMASVVYITS  173 (450)
Q Consensus       121 ~~~~~t~i~v~~~DrpGLl~~i~~~L~~~glnI~~A~i~t~~-~~~~d~f~V~~  173 (450)
                      ...+.|.|.+..+|+||.|+++-..|+++|+|+......... ....=.|+|.-
T Consensus        12 ~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~   65 (97)
T d1phza1          12 NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL   65 (97)
T ss_dssp             CSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB
T ss_pred             CCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEc
Confidence            455678888889999999999999999999999887776543 33455688865

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.83  E-value=0.78  Score=34.33  Aligned_cols=45  Identities=22%  Similarity=0.356  Sum_probs=34.3

Q ss_pred             eEEEEeeC---CCcchHHHHHHHHHHCCceEEEEEEeecCceeeeEEEEEeC
Q 044728          338 ISLELCCE---DRAGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFYVVDA  386 (450)
Q Consensus       338 t~iev~~~---DrpGLL~~It~~l~~~gi~I~~AkI~T~g~~a~D~F~v~~~  386 (450)
                      +.|.|.+.   ++||++++|..+|++.||||.....+    ...=.|.|.+.
T Consensus        14 a~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~S----e~~is~~v~~~   61 (91)
T d2cdqa2          14 TMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATS----EVSISLTLDPS   61 (91)
T ss_dssp             EEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEE----TTEEEEEECCG
T ss_pred             EEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEec----CCeEEEEEchh
Confidence            57788764   99999999999999999999998632    22235666443

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.34  E-value=0.72  Score=34.52  Aligned_cols=36  Identities=19%  Similarity=0.366  Sum_probs=31.7

Q ss_pred             CCceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 044728          122 ALEHTTIELTG---RDRPGLLSEVFAVLSDLKCNVMGAE  157 (450)
Q Consensus       122 ~~~~t~i~v~~---~DrpGLl~~i~~~L~~~glnI~~A~  157 (450)
                      ..+.+.|+|.+   +++||.++++..+|+++|+||.-..
T Consensus        10 ~~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          10 KRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             eCCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            45678889987   5999999999999999999998775