Citrus Sinensis ID: 044754

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSSWLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVEVQ
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHHccccHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEcccccEEEEEccccHHHHHHHcccccHHHHHHHHHHccccHHHHcHcccccccHHHHHHccccccEEc
Coil and Loop (DISEMBL)
MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAvtnrgsgqkspgkaykeyrMDDYSSWLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVEVQ
Flexible Loop (DISEMBL)
MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLavtnrgsgqkspgkaykeyrMDDYSSWLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAaadkfsrerlssvevq
Low Complexity Region (SEG)
MARCCnslfvvlnvvtfllsvfIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYlvllmliivgvislTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSSWLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVEVQ
Disordered region (IsUnstruct)
***CCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTN**************YRMDDYSSWLRKRMNDEENWRKIKSCFVATNICSDFERRHVN******************
Disordered Region (DISOPRED)
**RCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSSWLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSV***
Disordered Region (DISEMBL)
MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTN**********AYKEYRMDDYSSWLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAAD*************
Disordered Region (DISPRO)
**RCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSSWLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVEVQ
Transmembrane Helix (TMHMM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSSWLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVEVQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
Q8S8Q6	273	Tetraspanin-8 OS=Arabidop	yes	no	0.982	0.619	0.435	1e-39
Q9SUD4	263	Tetraspanin-7 OS=Arabidop	no	no	0.982	0.642	0.417	8e-37
Q9M0B7	272	Tetraspanin-9 OS=Arabidop	no	no	0.982	0.621	0.417	3e-35
Q9C7C1	282	Tetraspanin-6 OS=Arabidop	no	no	0.953	0.581	0.4	3e-30
F4I214	284	Tetraspanin-10 OS=Arabido	no	no	0.843	0.510	0.412	5e-29
Q9M1E7	285	Tetraspanin-3 OS=Arabidop	no	no	0.976	0.589	0.388	1e-28
Q9LSS4	327	Tetraspanin-4 OS=Arabidop	no	no	0.953	0.501	0.369	4e-21
Q84WF6	281	Tetraspanin-5 OS=Arabidop	no	no	0.843	0.516	0.369	2e-19
Q9LPR6	271	Tetraspanin-11 OS=Arabido	no	no	0.976	0.619	0.292	4e-19
Q9FIQ5	269	Protein TORNADO 2 OS=Arab	no	no	0.941	0.602	0.327	2e-17

>sp|Q8S8Q6|TET8_ARATH Tetraspanin-8 OS=Arabidopsis thaliana GN=TET8 PE=2 SV=1

 Score =  162 bits (410), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 117/170 (68%), Gaps = 1/170 (0%)

Query: 1   MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60
           MARC N+L  +LN + FLLS+ I+  G+ L    +TEC++FL KPV+ LG F+M++++ G
Sbjct: 1   MARCSNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAG 60

Query: 61  IRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSS 120
           + G+CC  +  LW YL ++ L+I+ V  +TVF   VTN+G+G+   GK YKEY++ DYS+
Sbjct: 61  LIGSCCRVTWLLWVYLFVMFLLILLVFCITVFAFVVTNKGAGEAIEGKGYKEYKLGDYST 120

Query: 121 WLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVE 170
           WL+KR+ + +NW KI+SC V + +CS  E + VN    + F +E L++++
Sbjct: 121 WLQKRVENGKNWNKIRSCLVESKVCSKLEAKFVN-VPVNSFYKEHLTALQ 169

May be involved in the regulation of cell differentiation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUD4|TET7_ARATH Tetraspanin-7 OS=Arabidopsis thaliana GN=TET7 PE=2 SV=1

 Score =  152 bits (385), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 113/170 (66%), Gaps = 1/170 (0%)

Query: 1   MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60
           M +C N+L  +LN  TFLLS+ I+  G+ L    ATEC++FL KP+++LG F+M +S+ G
Sbjct: 1   MVQCSNNLLGILNFFTFLLSIPILSAGIWLGKNAATECERFLDKPMVVLGIFLMFVSIAG 60

Query: 61  IRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSS 120
           + GACC  S  LW YL  + L+I+     T+F  AVTNRG+G+    + YKEY + DYS+
Sbjct: 61  LVGACCRVSCLLWLYLFAMFLLILLGFCFTIFAFAVTNRGAGEVISDRGYKEYHVADYSN 120

Query: 121 WLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVE 170
           WL+KR+N+ +NW +I+SC + +++CS +  R+ +    D F +  L++++
Sbjct: 121 WLQKRVNNAKNWERIRSCLMYSDVCSTYRTRYASINVED-FYKSNLNALQ 169

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0B7|TET9_ARATH Tetraspanin-9 OS=Arabidopsis thaliana GN=TET9 PE=2 SV=1

 Score =  147 bits (371), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 109/170 (64%), Gaps = 1/170 (0%)

Query: 1   MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60
           M R  NSL  +LN   FLLSV I+  G+ L     T+C++FL KP++ LG F+MII++ G
Sbjct: 1   MVRFSNSLVGILNFFVFLLSVPILSTGIWLSLKATTQCERFLDKPMIALGVFLMIIAIAG 60

Query: 61  IRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSS 120
           + G+CC  +  LWSYL ++  +I+ V+  T+F   VT++GSG+   GKAYKEYR++ YS 
Sbjct: 61  VVGSCCRVTWLLWSYLFVMFFLILIVLCFTIFAFVVTSKGSGETIQGKAYKEYRLEAYSD 120

Query: 121 WLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVE 170
           WL++R+N+ ++W  I+SC   +  C + E    N   +D F +E L++ E
Sbjct: 121 WLQRRVNNAKHWNSIRSCLYESKFCYNLELVTANHTVSD-FYKEDLTAFE 169

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7C1|TET6_ARATH Tetraspanin-6 OS=Arabidopsis thaliana GN=TET6 PE=2 SV=1

 Score =  131 bits (329), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 107/170 (62%), Gaps = 6/170 (3%)

Query: 1   MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60
           M R  N++  VLN++T L S+ I+    L     +T C+ FLQ P+L++GF I+I+SL G
Sbjct: 1   MYRFSNTVIGVLNLLTLLASIPII-GTALYKARSSTTCENFLQTPLLVIGFIILIVSLAG 59

Query: 61  IRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSS 120
             GAC + +  LW YLV+++ +I  ++ LT+F L VT++G G + PG+ YKEYR+ DY  
Sbjct: 60  FIGACFNVAWALWVYLVVMIFLIATLMGLTLFGLVVTSQGGGVEVPGRIYKEYRLGDYHP 119

Query: 121 WLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVE 170
           WLR+R+ D E W  I+SC +++  C+  E    +    D F R+ ++SV+
Sbjct: 120 WLRERVRDPEYWNSIRSCILSSKTCTKIE----SWTTLDYFQRD-MTSVQ 164

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|F4I214|TET10_ARATH Tetraspanin-10 OS=Arabidopsis thaliana GN=TET10 PE=2 SV=1

 Score =  127 bits (318), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 95/148 (64%), Gaps = 3/148 (2%)

Query: 7   SLFVV--LNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGA 64
           S FV+  +N++T LL+V ++ FGV + +T    C + L  PV+ LG FI +IS+IG  GA
Sbjct: 6   STFVIRWVNLLTMLLAVAVIIFGVWM-STHNDGCRRSLTFPVIALGGFIFLISIIGFLGA 64

Query: 65  CCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSSWLRK 124
           C  S   LW YL +L+++++ ++  TV    VTN GSG  +PG  YKEY+++DYSSW  K
Sbjct: 65  CKRSVALLWIYLAVLLIVLIAILVFTVLAFIVTNNGSGHTNPGLRYKEYKLNDYSSWFLK 124

Query: 125 RMNDEENWRKIKSCFVATNICSDFERRH 152
           ++N+  NW ++KSC V +  C    +++
Sbjct: 125 QLNNTSNWIRLKSCLVKSEQCRKLSKKY 152

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1E7|TET3_ARATH Tetraspanin-3 OS=Arabidopsis thaliana GN=TET3 PE=2 SV=1

 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 101/170 (59%), Gaps = 2/170 (1%)

Query: 3   RCCNSLFVVLNVVTFLLSVFIVWFGVLLIT-TEATECDKFLQKPVLLLGFFIMIISLIGI 61
           R  N L  ++N +TFLLS+ I+  G+ L +   +T+C +FLQ P++++G  IM++SL G 
Sbjct: 2   RTSNHLIGLVNFLTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIVIGISIMVVSLAGF 61

Query: 62  RGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSSW 121
            GAC  +   +W YLV+++LII  +I   +F  AVT++GSG+    + Y +Y ++DYS W
Sbjct: 62  AGACYRNKFLMWLYLVVMLLIIAALIGFIIFAYAVTDKGSGRTVLNRGYLDYYLEDYSGW 121

Query: 122 LRKRMNDEENWRKIKSCFVATNICSDFERRHVNAA-AADKFSRERLSSVE 170
           L+ R++D+  W KI SC   +  C    R        AD F   RLS VE
Sbjct: 122 LKDRVSDDSYWGKISSCLRDSGACRKIGRNFNGVPETADMFFLRRLSPVE 171

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSS4|TET4_ARATH Tetraspanin-4 OS=Arabidopsis thaliana GN=TET4 PE=3 SV=1

 Score =  100 bits (249), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 96/168 (57%), Gaps = 4/168 (2%)

Query: 6   NSLFVVLNVVTFLLSVFIVWFGVLLIT-TEATECDKFLQKPVLLLGFFIMIISLIGIRGA 64
           ++L  ++N  TFLLS+ I+  G+ L +   +T+C +FLQ P++++G  IM+ISL GI GA
Sbjct: 5   SNLIGLINFFTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIIIGISIMVISLAGIAGA 64

Query: 65  CCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSSWLRK 124
           C  +   +W YL  +  +I  +I  T+F   VT++GSG+    + Y +Y ++DYS WL+ 
Sbjct: 65  CYQNKFLMWLYLFTMFFVIAALIGFTIFAYVVTDKGSGRFVMNRRYLDYYLNDYSGWLKD 124

Query: 125 RMNDEENWRKIKSCFVATNICSDFERRHVNAAA--ADKFSRERLSSVE 170
           R+ D   WR I SC   + +C     R +N     A  F    LS VE
Sbjct: 125 RVTDNGYWRDIGSCVRDSGVCKKIG-RDLNGVPETAHMFYFRNLSPVE 171

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WF6|TET5_ARATH Tetraspanin-5 OS=Arabidopsis thaliana GN=TET5 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 1/146 (0%)

Query: 1   MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60
           M R  N++   LN++T + S+ ++    L +    T C+ FLQKP+L+LG  I+I+S+ G
Sbjct: 1   MNRMSNTVIGFLNILTLISSIVLL-GSALWMGRSKTTCEHFLQKPLLILGLAILILSVAG 59

Query: 61  IRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSS 120
           + GACC  +  LW YL  ++ IIV ++ LT+F   VT+   G    G+ YKE++++ Y  
Sbjct: 60  LVGACCDVAWVLWVYLFFMVFIIVALMGLTLFGFIVTSHSGGVVVDGRVYKEFKLEAYHP 119

Query: 121 WLRKRMNDEENWRKIKSCFVATNICS 146
           WL+ R+ D   W  IK+C + +  CS
Sbjct: 120 WLKTRVVDTNYWVTIKTCLLGSVTCS 145

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPR6|TET11_ARATH Tetraspanin-11 OS=Arabidopsis thaliana GN=TET11 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 92/171 (53%), Gaps = 3/171 (1%)

Query: 1   MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEA-TECDKFLQKPVLLLGFFIMIISLI 59
           M R  N +  + N +  L+    + + + +   +  T+C+  ++ P+L  G  + ++SL+
Sbjct: 1   MFRVSNFMVGLANTLVMLVGASAIGYSIYMFVHQGVTDCESAIRIPLLTTGLILFLVSLL 60

Query: 60  GIRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYS 119
           G+ G+C   +  + SYL++L   IV ++  ++F   VTN+G+G+   G+ YKEYR  D+S
Sbjct: 61  GVIGSCFKENLAMVSYLIILFGGIVALMIFSIFLFFVTNKGAGRVVSGRGYKEYRTVDFS 120

Query: 120 SWLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVE 170
           +WL   +  +  W  I+SC    N+C D     V +  AD F  + LS ++
Sbjct: 121 TWLNGFVGGKR-WVGIRSCLAEANVCDDLSDGRV-SQIADAFYHKNLSPIQ 169

May be involved in the regulation of cell differentiation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIQ5|TRN2_ARATH Protein TORNADO 2 OS=Arabidopsis thaliana GN=TRN2 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 3/165 (1%)

Query: 6   NSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGAC 65
           N++   +N +T LLS+ ++  G+ L       C K LQ PV++LG  I+++ L G  G  
Sbjct: 5   NNVIGCINFITVLLSIPVIGAGIWLAIGTVNSCVKLLQWPVIILGVLILLVGLAGFIGGF 64

Query: 66  CHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSSWLRKR 125
              +  L  YL+ ++++IV +  L  F   VT RGSG   P +AY EY + D+S WLR+R
Sbjct: 65  WRITWLLVVYLIAMLILIVLLGCLVGFIYMVTIRGSGHPEPSRAYLEYSLQDFSGWLRRR 124

Query: 126 MNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVE 170
           +     W +I++C   T IC +  +R+     A  F    L  ++
Sbjct: 125 VQRSYKWERIRTCLSTTTICPELNQRY---TLAQDFFNAHLDPIQ 166

Involved in the basipetal transport of auxin (IAA) that modulates growth and organs organization, as well as cell differentiation. Regulates shoot apical meristem (SAM) organization in the peripheral zone. Required for initial meristematic divisions in the epidermal/lateral root cap leading to the formation of epidermal cells and a clone of lateral root cap cells, as well as for the maintenance of the radial pattern of cell specification in the root, thus regulating the distinction between the lateral root cap and epidermis. Together with WIH peptides, promotes megasporogenesis.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
224143855	264	predicted protein [Populus trichocarpa]	0.982	0.640	0.452	4e-40
224088370	271	predicted protein [Populus trichocarpa]	0.982	0.623	0.458	7e-39
51968454	273	similar to senescence-associated protein	0.982	0.619	0.435	4e-38
79592093	273	tetraspanin8 [Arabidopsis thaliana] gi|7	0.982	0.619	0.435	4e-38
255574603	271	conserved hypothetical protein [Ricinus	0.982	0.623	0.447	2e-37
297825293	273	hypothetical protein ARALYDRAFT_481243 [	0.982	0.619	0.435	2e-37
380719865	272	senescence-associated protein [Vitis qui	0.982	0.621	0.447	6e-37
225445732	272	PREDICTED: uncharacterized protein LOC10	0.982	0.621	0.447	8e-37
147858412	272	hypothetical protein VITISV_035079 [Viti	0.982	0.621	0.447	9e-37
312281535	272	unnamed protein product [Thellungiella h	0.982	0.621	0.429	3e-36

>gi|224143855|ref|XP_002325098.1| predicted protein [Populus trichocarpa] gi|222866532|gb|EEF03663.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 117/170 (68%), Gaps = 1/170 (0%)

Query: 1   MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60
           M R  N+L  +LN +TFLLS+ I+W G+ L     +ECDKF   PV++LG F++++SL G
Sbjct: 1   MFRLSNNLVGILNFITFLLSIPILWAGIWLKNKGTSECDKFFDTPVIILGIFLLLVSLAG 60

Query: 61  IRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSS 120
           + GACC  S  LW+YL+++ L+IV +   T+F   VTN+G+GQ   GK YKEY++ DYS+
Sbjct: 61  LIGACCRVSWLLWAYLLVMFLLIVLLFCFTIFAFVVTNKGAGQVLSGKGYKEYKLGDYSN 120

Query: 121 WLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVE 170
           WL+KR+ +++NWRKIKSC +   +CSDF ++  N      ++R  LS+++
Sbjct: 121 WLQKRVGNQKNWRKIKSCLIDAKVCSDFNQKFANDTVEVLYTRH-LSALQ 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088370|ref|XP_002308429.1| predicted protein [Populus trichocarpa] gi|118489732|gb|ABK96667.1| unknown [Populus trichocarpa x Populus deltoides] gi|222854405|gb|EEE91952.1| predicted protein [Populus trichocarpa]

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 118/170 (69%), Gaps = 1/170 (0%)

Query: 1   MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60
           M R  N+L  +LN +TFLLS+ I+W G+ L    A+EC+KFL  PV++LG F++++SL G
Sbjct: 1   MFRLSNNLVGILNFITFLLSIPILWAGIWLRNKGASECEKFLDTPVIVLGVFLLVVSLAG 60

Query: 61  IRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSS 120
           + GACC  S  LW YLV++ L+IV +   T+ T  VTN+G+G+    K YKEYR+ DYS+
Sbjct: 61  LIGACCGVSWLLWVYLVVMFLLIVVLFCFTILTFVVTNKGAGKVLSDKGYKEYRLGDYSN 120

Query: 121 WLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVE 170
           WL+KR+   +NW KIKSC +   IC+DF++R++N +    ++R  LS+++
Sbjct: 121 WLQKRVTSGKNWSKIKSCLIDAKICTDFQQRYLNDSLTVLYTRH-LSALQ 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51968454|dbj|BAD42919.1| similar to senescence-associated protein [Arabidopsis thaliana]

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 117/170 (68%), Gaps = 1/170 (0%)

Query: 1   MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60
           MARC N+L  +LN + FLLS+ I+  G+ L    +TEC++FL KPV+ LG F+M++++ G
Sbjct: 1   MARCSNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAG 60

Query: 61  IRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSS 120
           + G+CC  +  LW YL ++ L+I+ V  +TVF   VTN+G+G+   GK YKEY++ DYS+
Sbjct: 61  LVGSCCRVTWLLWVYLFVMFLLILLVFCITVFAFVVTNKGAGEAIEGKGYKEYKLGDYST 120

Query: 121 WLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVE 170
           WL+KR+ + +NW KI+SC V + +CS  E + VN    + F +E L++++
Sbjct: 121 WLQKRVENGKNWNKIRSCLVESKVCSKLEAKFVN-VPVNSFYKEHLTALQ 169

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79592093|ref|NP_850045.2| tetraspanin8 [Arabidopsis thaliana] gi|75248018|sp|Q8S8Q6.1|TET8_ARATH RecName: Full=Tetraspanin-8 gi|20197174|gb|AAM14957.1| hypothetical protein [Arabidopsis thaliana] gi|330252399|gb|AEC07493.1| tetraspanin8 [Arabidopsis thaliana]

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 117/170 (68%), Gaps = 1/170 (0%)

Query: 1   MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60
           MARC N+L  +LN + FLLS+ I+  G+ L    +TEC++FL KPV+ LG F+M++++ G
Sbjct: 1   MARCSNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAG 60

Query: 61  IRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSS 120
           + G+CC  +  LW YL ++ L+I+ V  +TVF   VTN+G+G+   GK YKEY++ DYS+
Sbjct: 61  LIGSCCRVTWLLWVYLFVMFLLILLVFCITVFAFVVTNKGAGEAIEGKGYKEYKLGDYST 120

Query: 121 WLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVE 170
           WL+KR+ + +NW KI+SC V + +CS  E + VN    + F +E L++++
Sbjct: 121 WLQKRVENGKNWNKIRSCLVESKVCSKLEAKFVN-VPVNSFYKEHLTALQ 169

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574603|ref|XP_002528212.1| conserved hypothetical protein [Ricinus communis] gi|223532373|gb|EEF34169.1| conserved hypothetical protein [Ricinus communis]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 116/170 (68%), Gaps = 1/170 (0%)

Query: 1   MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60
           M R  N+L   LN +TFLLS+ I+  G+ L     +EC++FL  PV++LG F+M++SL G
Sbjct: 1   MFRLSNNLVGFLNFITFLLSIPILGAGIWLRNHGTSECERFLDTPVIVLGVFLMLVSLAG 60

Query: 61  IRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSS 120
           + GACC  S  LW YL+++ ++IV +   T+F   VTN+G+GQ   G+ YKEYR+ DYS+
Sbjct: 61  LVGACCRVSWLLWLYLLVMFILIVLLFCFTIFAFVVTNKGAGQVLSGRGYKEYRLGDYSN 120

Query: 121 WLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVE 170
           WL+KR+N+ +NW KIKSC   + +CSDF ++++N      ++R  LS+V+
Sbjct: 121 WLQKRVNNTKNWNKIKSCLADSKVCSDFNQKYLNDTLTILYTRH-LSAVQ 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825293|ref|XP_002880529.1| hypothetical protein ARALYDRAFT_481243 [Arabidopsis lyrata subsp. lyrata] gi|297326368|gb|EFH56788.1| hypothetical protein ARALYDRAFT_481243 [Arabidopsis lyrata subsp. lyrata]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 114/170 (67%), Gaps = 1/170 (0%)

Query: 1   MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60
           MARC N+L  +LN + FLLS+ I+  G+ L    +TEC++FL KPV+ LG F+M++++ G
Sbjct: 1   MARCSNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAG 60

Query: 61  IRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSS 120
           + G+CC  +  LW YL ++ L+I+ V  +TVF   VTN+G+G+   GK YKEY++ DYS 
Sbjct: 61  LIGSCCRVTWLLWVYLFVMFLLILLVFCITVFAFVVTNKGAGEAIEGKGYKEYKLGDYSD 120

Query: 121 WLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVE 170
           WL+KR+ + +NW KI+SC V + +CS  E + VN      F  E L++++
Sbjct: 121 WLQKRVENGKNWNKIRSCLVESKVCSKLEAKFVNVPVTS-FYNEHLTALQ 169

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380719865|gb|AFD63133.1| senescence-associated protein [Vitis quinquangularis]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 113/170 (66%), Gaps = 1/170 (0%)

Query: 1   MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60
           M R  N+L  +LN +TFLLSV I+  G+ L    +T+C+KFL+KPV+ LG F+M++SL G
Sbjct: 1   MFRLSNNLVGILNFITFLLSVPILGAGIWLSHRASTDCEKFLEKPVIALGVFLMVVSLAG 60

Query: 61  IRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSS 120
           + GACC  S  LW YL+++ L+IV +   T+F   VTN+G+G+   GK YKEYR+ DYS+
Sbjct: 61  LIGACCRVSWLLWVYLLVMFLLIVLLFCFTIFAFVVTNKGAGEVLSGKGYKEYRLGDYSN 120

Query: 121 WLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVE 170
           WL+KR+N+ +NW +IKSC     +C    +  V     ++F  E+LS ++
Sbjct: 121 WLQKRVNNTKNWNRIKSCLQDGKVCQSLSQDKV-GETVEQFYAEQLSPIQ 169

Source: Vitis quinquangularis

Species: Vitis quinquangularis

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445732|ref|XP_002271684.1| PREDICTED: uncharacterized protein LOC100243286 [Vitis vinifera]

 Score =  158 bits (399), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 112/170 (65%), Gaps = 1/170 (0%)

Query: 1   MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60
           M R  N+L  +LN +TFLLSV I+  G+ L    +T+C+KFL+KPV+ LG F+M++SL G
Sbjct: 1   MFRLSNNLVGILNFITFLLSVPILGAGIWLSHRASTDCEKFLEKPVIALGVFLMVVSLAG 60

Query: 61  IRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSS 120
           + GACC  S  LW YL+++ L+IV +   T+F   VTN+G+G+   GK YKEYR+ DYS+
Sbjct: 61  LIGACCRVSWLLWVYLLVMFLLIVLLFCFTIFAFVVTNKGAGEVLSGKGYKEYRLGDYSN 120

Query: 121 WLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVE 170
           WL+KR+N+ +NW +IKSC     +C    +  V      +F  E+LS ++
Sbjct: 121 WLQKRVNNTKNWNRIKSCLQDGKVCQSLSQDKV-GETVQQFYAEQLSPIQ 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858412|emb|CAN83511.1| hypothetical protein VITISV_035079 [Vitis vinifera]

 Score =  158 bits (399), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 112/170 (65%), Gaps = 1/170 (0%)

Query: 1   MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60
           M R  N+L  +LN +TFLLSV I+  G+ L    +T+C+KFL+KPV+ LG F+M++SL G
Sbjct: 1   MFRLSNNLVGILNFITFLLSVPILGAGIWLSHRASTDCEKFLEKPVIALGVFLMVVSLAG 60

Query: 61  IRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSS 120
           + GACC  S  LW YL+++ L+IV +   T+F   VTN+G+G+   GK YKEYR+ DYS+
Sbjct: 61  LIGACCRVSWLLWVYLLVMFLLIVLLFCFTIFAFVVTNKGAGEVLSGKGYKEYRLGDYSN 120

Query: 121 WLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVE 170
           WL+KR+N+ +NW +IKSC     +C    +  V      +F  E+LS ++
Sbjct: 121 WLQKRVNNTKNWNRIKSCLQDGKVCQSLSQDKV-GETVQQFYAEQLSPIQ 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281535|dbj|BAJ33633.1| unnamed protein product [Thellungiella halophila]

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 120/170 (70%), Gaps = 1/170 (0%)

Query: 1   MARCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60
           M RC N+L  +LN V FLLS+ I+  G+ L    +TEC++FL KPV+ LG F+M++++ G
Sbjct: 1   MVRCSNNLVGILNFVVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAG 60

Query: 61  IRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSS 120
           + G+CC  +  LW+YL+++ L+I+ V  +T+F   VTN+G+G+K  G+ YKEYR+ DYS+
Sbjct: 61  LIGSCCRVTWLLWTYLLVMFLLILLVFCITIFAFVVTNKGAGEKVSGRGYKEYRLGDYSN 120

Query: 121 WLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVE 170
           WL+KR+N+++NW +I+SC V + +CS  E + V+    + F  E L++++
Sbjct: 121 WLQKRVNNDKNWNRIRSCLVESKVCSKLEAKLVD-VPVNSFYNEHLTALQ 169

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2048982	273	TET8 "AT2G23810" [Arabidopsis	0.982	0.619	0.364	3.8e-30
TAIR|locus:2132992	263	TET7 "AT4G28050" [Arabidopsis	0.831	0.543	0.388	7.1e-29
TAIR|locus:2118696	272	TET9 "AT4G30430" [Arabidopsis	0.831	0.525	0.381	3.5e-27
TAIR|locus:2099272	282	TET6 "AT3G12090" [Arabidopsis	0.761	0.464	0.389	6.8e-24
TAIR|locus:2038488	284	TET10 "tetraspanin10" [Arabido	0.75	0.454	0.392	7.8e-23
TAIR|locus:2085692	285	TET3 "AT3G45600" [Arabidopsis	0.837	0.505	0.342	1e-20
TAIR|locus:2144050	327	TET4 "tetraspanin4" [Arabidops	0.831	0.437	0.346	9.2e-20
TAIR|locus:2014054	271	TET11 "AT1G18520" [Arabidopsis	0.773	0.490	0.303	1.1e-16
TAIR|locus:2178570	269	TRN2 "AT5G46700" [Arabidopsis	0.773	0.494	0.315	1.4e-16
TAIR|locus:2050354	270	TET2 "AT2G19580" [Arabidopsis	0.819	0.522	0.275	2.3e-16

TAIR|locus:2048982 TET8 "AT2G23810" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 62/170 (36%), Positives = 96/170 (56%)

Query:     1 MARCCXXXXXXXXXXXXXXXXXIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIG 60
             MARC                  I+  G+ L    +TEC++FL KPV+ LG F+M++++ G
Sbjct:     1 MARCSNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAG 60

Query:    61 IRGACCHSSGYLWSYXXXXXXXXXXXXXXTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSS 120
             + G+CC  +  LW Y              TVF   VTN+G+G+   GK YKEY++ DYS+
Sbjct:    61 LIGSCCRVTWLLWVYLFVMFLLILLVFCITVFAFVVTNKGAGEAIEGKGYKEYKLGDYST 120

Query:   121 WLRKRMNDEENWRKIKSCFVATNICSDFERRHVNAAAADKFSRERLSSVE 170
             WL+KR+ + +NW KI+SC V + +CS  E + VN    + F +E L++++
Sbjct:   121 WLQKRVENGKNWNKIRSCLVESKVCSKLEAKFVNVPV-NSFYKEHLTALQ 169

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2132992 TET7 "AT4G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 56/144 (38%), Positives = 90/144 (62%)

Query:    27 GVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYXXXXXXXXXXX 86
             G+ L    ATEC++FL KP+++LG F+M +S+ G+ GACC  S  LW Y           
Sbjct:    27 GIWLGKNAATECERFLDKPMVVLGIFLMFVSIAGLVGACCRVSCLLWLYLFAMFLLILLG 86

Query:    87 XXXTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSSWLRKRMNDEENWRKIKSCFVATNICS 146
                T+F  AVTNRG+G+    + YKEY + DYS+WL+KR+N+ +NW +I+SC + +++CS
Sbjct:    87 FCFTIFAFAVTNRGAGEVISDRGYKEYHVADYSNWLQKRVNNAKNWERIRSCLMYSDVCS 146

Query:   147 DFERRHVNAAAADKFSRERLSSVE 170
              +  R+ +    D F +  L++++
Sbjct:   147 TYRTRYASINVED-FYKSNLNALQ 169

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

TAIR|locus:2118696 TET9 "AT4G30430" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 55/144 (38%), Positives = 86/144 (59%)

Query:    27 GVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYXXXXXXXXXXX 86
             G+ L     T+C++FL KP++ LG F+MII++ G+ G+CC  +  LWSY           
Sbjct:    27 GIWLSLKATTQCERFLDKPMIALGVFLMIIAIAGVVGSCCRVTWLLWSYLFVMFFLILIV 86

Query:    87 XXXTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSSWLRKRMNDEENWRKIKSCFVATNICS 146
                T+F   VT++GSG+   GKAYKEYR++ YS WL++R+N+ ++W  I+SC   +  C 
Sbjct:    87 LCFTIFAFVVTSKGSGETIQGKAYKEYRLEAYSDWLQRRVNNAKHWNSIRSCLYESKFCY 146

Query:   147 DFERRHVNAAAADKFSRERLSSVE 170
             + E    N   +D F +E L++ E
Sbjct:   147 NLELVTANHTVSD-FYKEDLTAFE 169

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2099272 TET6 "AT3G12090" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 53/136 (38%), Positives = 80/136 (58%)

Query:    35 ATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYXXXXXXXXXXXXXXTVFTL 94
             +T C+ FLQ P+L++GF I+I+SL G  GAC + +  LW Y              T+F L
Sbjct:    34 STTCENFLQTPLLVIGFIILIVSLAGFIGACFNVAWALWVYLVVMIFLIATLMGLTLFGL 93

Query:    95 AVTNRGSGQKSPGKAYKEYRMDDYSSWLRKRMNDEENWRKIKSCFVATNICSDFERRHVN 154
              VT++G G + PG+ YKEYR+ DY  WLR+R+ D E W  I+SC +++  C+  E    +
Sbjct:    94 VVTSQGGGVEVPGRIYKEYRLGDYHPWLRERVRDPEYWNSIRSCILSSKTCTKIE----S 149

Query:   155 AAAADKFSRERLSSVE 170
                 D F R+ ++SV+
Sbjct:   150 WTTLDYFQRD-MTSVQ 164

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2038488 TET10 "tetraspanin10" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 51/130 (39%), Positives = 72/130 (55%)

Query:    23 IVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYXXXXXXX 82
             ++ FGV + +T    C + L  PV+ LG FI +IS+IG  GAC  S   LW Y       
Sbjct:    24 VIIFGVWM-STHNDGCRRSLTFPVIALGGFIFLISIIGFLGACKRSVALLWIYLAVLLIV 82

Query:    83 XXXXXXXTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSSWLRKRMNDEENWRKIKSCFVAT 142
                    TV    VTN GSG  +PG  YKEY+++DYSSW  K++N+  NW ++KSC V +
Sbjct:    83 LIAILVFTVLAFIVTNNGSGHTNPGLRYKEYKLNDYSSWFLKQLNNTSNWIRLKSCLVKS 142

Query:   143 NICSDFERRH 152
               C    +++
Sbjct:   143 EQCRKLSKKY 152

GO:0005576 "extracellular region" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2085692 TET3 "AT3G45600" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 50/146 (34%), Positives = 76/146 (52%)

Query:    27 GVLLIT-TEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYXXXXXXXXXX 85
             G+ L +   +T+C +FLQ P++++G  IM++SL G  GAC  +   +W Y          
Sbjct:    26 GIWLSSRANSTDCLRFLQWPLIVIGISIMVVSLAGFAGACYRNKFLMWLYLVVMLLIIAA 85

Query:    86 XXXXTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSSWLRKRMNDEENWRKIKSCFVATNIC 145
                  +F  AVT++GSG+    + Y +Y ++DYS WL+ R++D+  W KI SC   +  C
Sbjct:    86 LIGFIIFAYAVTDKGSGRTVLNRGYLDYYLEDYSGWLKDRVSDDSYWGKISSCLRDSGAC 145

Query:   146 SDFERRHVNAA-AADKFSRERLSSVE 170
                 R        AD F   RLS VE
Sbjct:   146 RKIGRNFNGVPETADMFFLRRLSPVE 171

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2144050 TET4 "tetraspanin4" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 51/147 (34%), Positives = 76/147 (51%)

Query:    27 GVLLIT-TEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYXXXXXXXXXX 85
             G+ L +   +T+C +FLQ P++++G  IM+ISL GI GAC  +   +W Y          
Sbjct:    26 GIWLSSRANSTDCLRFLQWPLIIIGISIMVISLAGIAGACYQNKFLMWLYLFTMFFVIAA 85

Query:    86 XXXXTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSSWLRKRMNDEENWRKIKSCFVATNIC 145
                 T+F   VT++GSG+    + Y +Y ++DYS WL+ R+ D   WR I SC   + +C
Sbjct:    86 LIGFTIFAYVVTDKGSGRFVMNRRYLDYYLNDYSGWLKDRVTDNGYWRDIGSCVRDSGVC 145

Query:   146 SDFERRHVNAA--AADKFSRERLSSVE 170
                 R  +N     A  F    LS VE
Sbjct:   146 KKIGR-DLNGVPETAHMFYFRNLSPVE 171

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2014054 TET11 "AT1G18520" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 41/135 (30%), Positives = 70/135 (51%)

Query:    36 TECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYXXXXXXXXXXXXXXTVFTLA 95
             T+C+  ++ P+L  G  + ++SL+G+ G+C   +  + SY              ++F   
Sbjct:    37 TDCESAIRIPLLTTGLILFLVSLLGVIGSCFKENLAMVSYLIILFGGIVALMIFSIFLFF 96

Query:    96 VTNRGSGQKSPGKAYKEYRMDDYSSWLRKRMNDEENWRKIKSCFVATNICSDFERRHVNA 155
             VTN+G+G+   G+ YKEYR  D+S+WL   +  +  W  I+SC    N+C D     V+ 
Sbjct:    97 VTNKGAGRVVSGRGYKEYRTVDFSTWLNGFVGGKR-WVGIRSCLAEANVCDDLSDGRVSQ 155

Query:   156 AAADKFSRERLSSVE 170
              A D F  + LS ++
Sbjct:   156 IA-DAFYHKNLSPIQ 169

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2178570 TRN2 "AT5G46700" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 42/133 (31%), Positives = 62/133 (46%)

Query:    23 IVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYXXXXXXX 82
             ++  G+ L       C K LQ PV++LG  I+++ L G  G     +  L  Y       
Sbjct:    22 VIGAGIWLAIGTVNSCVKLLQWPVIILGVLILLVGLAGFIGGFWRITWLLVVYLIAMLIL 81

Query:    83 XXXXXXXTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSSWLRKRMNDEENWRKIKSCFVAT 142
                      F   VT RGSG   P +AY EY + D+S WLR+R+     W +I++C   T
Sbjct:    82 IVLLGCLVGFIYMVTIRGSGHPEPSRAYLEYSLQDFSGWLRRRVQRSYKWERIRTCLSTT 141

Query:   143 NICSDFERRHVNA 155
              IC +  +R+  A
Sbjct:   142 TICPELNQRYTLA 154

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009933 "meristem structural organization" evidence=IMP

GO:0009956 "radial pattern formation" evidence=IMP

GO:0010015 "root morphogenesis" evidence=RCA;IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0040007 "growth" evidence=RCA

TAIR|locus:2050354 TET2 "AT2G19580" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 40/145 (27%), Positives = 73/145 (50%)

Query:    27 GVLLITTEATECDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYXXXXXXXXXXX 86
             G+ L +    EC   L+ PV++LG  I+++S  G  GA  +    L  Y           
Sbjct:    26 GIWLASKPDNECVNLLRWPVVVLGVLILVVSATGFIGAYKYKETLLAVYLCCMAILIGLL 85

Query:    87 XXXTVFTLAVTNRGSGQKSPGKAYKEYRMDDYSSWLRKRMNDEENWRKIKSCFVATNICS 146
                 +F   VT      + PG+ YKEYR++ +S+WL++ + D +NW ++++C   TN+C 
Sbjct:    86 LVVLIFAFVVTRPDGSYRVPGRGYKEYRLEGFSNWLKENVVDSKNWGRLRACLADTNVCP 145

Query:   147 DFERRHVNAAAADKF-SRERLSSVE 170
                +  + A   D+F S  +++ ++
Sbjct:   146 KLNQEFITA---DQFFSSSKITPLQ 167

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XVIII.3026.1 hypothetical protein (264 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
pfam00335	221	pfam00335, Tetraspannin, Tetraspanin family	1e-13

>gnl|CDD|215864 pfam00335, Tetraspannin, Tetraspanin family

 Score = 65.5 bits (160), Expect = 1e-13
 Identities = 25/125 (20%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 4   CCNSLFVVLNVVTFLLSVFIVWFGVLL-------ITTEATECDKFLQKPVLLLGFFIMII 56
           C   L  +LN++  LL + ++  G+ L       +     +  + L   +++LG  I+++
Sbjct: 1   CLKYLLFLLNLLFLLLGLALLAVGIWLLVIAKDYLAIALNDSIRALYILIIVLGVIILLV 60

Query: 57  SLIGIRGACCHSSGYLWSYLVLLMLIIVGVISLTVFTLAVTNRGSGQKSPGKAYKEYRMD 116
             +G  GA   S   L +Y +LL+++ +  I+  +      ++       G  YK+   +
Sbjct: 61  GFLGCCGAIKESRCLLLTYFILLLILFILEIAAGILAFVYRDKLESSLKEGLNYKDKSYN 120

Query: 117 DYSSW 121
           D  + 
Sbjct: 121 DDPNL 125

Length = 221

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
KOG3882	237	consensus Tetraspanin family integral membrane pro	99.89
PF00335	221	Tetraspannin: Tetraspanin family RDS_ROM1 subfamil	99.53
cd03154	100	TM4SF3_like_LEL Tetraspanin, extracellular domain	94.49
cd03161	104	TM4SF2_6_like_LEL Tetraspanin, extracellular domai	90.19
cd03163	105	TM4SF8_like_LEL Tetraspanin, extracellular domain	89.54
cd03159	121	TM4SF9_like_LEL Tetraspanin, extracellular domain	88.95
PF05915	115	DUF872: Eukaryotic protein of unknown function (DU	86.31
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	84.62
cd03164	86	CD53_like_LEL Tetraspanin, extracellular domain or	84.4
cd03160	117	CD37_CD82_like_LEL Tetraspanin, extracellular doma	84.14
cd03158	119	penumbra_like_LEL Tetraspanin, extracellular domai	84.14

>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]

Probab=99.89  E-value=1e-23  Score=172.06  Aligned_cols=139  Identities=18%  Similarity=0.365  Sum_probs=112.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc------chhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHH
Q 044754            3 RCCNSLFVVLNVVTFLLSVFIVWFGVLLITTEATECD------KFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYL   76 (172)
Q Consensus         3 ~~~~~ll~~~N~l~~l~G~~ll~~Giw~~~~~~~~~~------~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~   76 (172)
                      ++.||+++++|+++|++|++++++|+|+..++.....      ....+.++++|.+++++|++||+||+|||+|+|.+|+
T Consensus         7 ~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~~~~~~~~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~   86 (237)
T KOG3882|consen    7 SCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLESDFLVPAYILIAVGGVVFLVGFLGCCGALRESRCLLLSYF   86 (237)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhccccchhcchhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHH
Confidence            5899999999999999999999999999988542111      1123457899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhheeeecCCCCccC---CCcccccccccc----chhHHhhhc-----CCcCCCcc------cCcc
Q 044754           77 VLLMLIIVGVISLTVFTLAVTNRGSGQKS---PGKAYKEYRMDD----YSSWLRKRM-----NDEENWRK------IKSC  138 (172)
Q Consensus        77 ~~l~ll~l~el~~~i~~~~~~~~~~~~~~---~~~~~~~y~~~~----~~~~lQ~~~-----~~~~dW~~------~~sC  138 (172)
                      +++++++++|++.++++++++++.+++..   ..+.++.|+.++    ..|.+|+++     ++++||..      |.||
T Consensus        87 ~~l~l~~i~e~~~~i~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~d~~Q~~~~CCG~~~~~~~~~~~~~~vP~SC  166 (237)
T KOG3882|consen   87 ILLLLLFIAELAAGILAFVFRDSLRDELEEQLLKSIWNNYSSDPDLGEAWDKLQRELKCCGVNGYSDYFNCSSNNVPPSC  166 (237)
T ss_pred             HHHHHHHHHHHHHHHHhheeHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhccCCcCCCchHHhcCCCCCCCccc
Confidence            99999999999999999999887665432   235556676554    358899986     78888843      5678


Q ss_pred             ccC
Q 044754          139 FVA  141 (172)
Q Consensus       139 ~~~  141 (172)
                      +.+
T Consensus       167 C~~  169 (237)
T KOG3882|consen  167 CKR  169 (237)
T ss_pred             CCC
Confidence            764

>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []

Probab=99.53  E-value=3.1e-16  Score=122.52  Aligned_cols=132  Identities=22%  Similarity=0.493  Sum_probs=18.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhh-cccccc-----ccchhhhhHHHHHHHHHHHHHHhhHHhhhcchhHHHHHHH
Q 044754            4 CCNSLFVVLNVVTFLLSVFIVWFGVLLI-TTEATE-----CDKFLQKPVLLLGFFIMIISLIGIRGACCHSSGYLWSYLV   77 (172)
Q Consensus         4 ~~~~ll~~~N~l~~l~G~~ll~~Giw~~-~~~~~~-----~~~~~~~~~i~~G~~i~~vs~~G~~GA~~e~~~lL~~y~~   77 (172)
                      |.|+++.++|++++++|++++++|+|+. .+...+     .........+.+|+++++++++|++|+.|||++++..|.+
T Consensus         1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~   80 (221)
T PF00335_consen    1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSSSFISYVIIILIFIGIFILIISFLGCIGACRKNRCLLIIYII   80 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccc
Confidence            5789999999999999999999999993 222111     1112234456799999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhheeeecCCCCccCCC---ccccccc----cccchhHHhhhc-----CCcCCCccc
Q 044754           78 LLMLIIVGVISLTVFTLAVTNRGSGQKSPG---KAYKEYR----MDDYSSWLRKRM-----NDEENWRKI  135 (172)
Q Consensus        78 ~l~ll~l~el~~~i~~~~~~~~~~~~~~~~---~~~~~y~----~~~~~~~lQ~~~-----~~~~dW~~~  135 (172)
                      ++++++++|++.+++++..+++........   ...+.+.    ..+..|.+|+++     ++++||...
T Consensus        81 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iq~~~~CCG~~~~~d~~~~  150 (221)
T PF00335_consen   81 LLILLFVLELVVGIVAFSYRDQLNSSLKDGLSLRCMKSYNSNESFSEAWDNIQEKFECCGVNSPDDWFTS  150 (221)
T ss_dssp             -------------------HHHHHHHHHHHHHHHHHHSSTT-CHHHHHHHHHHHHHT--SSTTCHHHHHH
T ss_pred             chhhHHHHHHHHHHhhhhccccccccccccccchhhhccccccchhhheecccccccccCCCCCcccccc
Confidence            999999999999999999887654322110   0011111    111236788886     688888754

CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.

>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily

Probab=94.49  E-value=0.0044  Score=43.56  Aligned_cols=56  Identities=9%  Similarity=-0.007  Sum_probs=33.7

Q ss_pred             HhhheeeecCCCCcc--CCCccccccccc-----cchhHHhhhc-----CCcCCCc---ccCcc-ccCCCcC
Q 044754           90 TVFTLAVTNRGSGQK--SPGKAYKEYRMD-----DYSSWLRKRM-----NDEENWR---KIKSC-FVATNIC  145 (172)
Q Consensus        90 ~i~~~~~~~~~~~~~--~~~~~~~~y~~~-----~~~~~lQ~~~-----~~~~dW~---~~~sC-~~~~~~C  145 (172)
                      ||++|+++++....+  ...+.+++|..+     +..|.+|+++     +++.||.   .|.|| +.....|
T Consensus         1 gi~~~v~r~~i~~~i~~~~~~~i~~y~~~~~~~~~~~d~lQ~~l~CCG~~~~~d~~~~~vP~SCcc~~~~~c   72 (100)
T cd03154           1 GIVGAVYKPKIENELKEKNTKLLSLLGQNAKSVKKSLEKFQKELKCCGLVNGADDWGNDIPASCNCTTTQSD   72 (100)
T ss_pred             CEEEEEeHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCCCCchhhccCCCCCCCcCCCCCCC
Confidence            578889988765433  123455555422     2248899997     5666663   35788 4444445

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.

>cd03161 TM4SF2_6_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily

Probab=90.19  E-value=0.033  Score=39.08  Aligned_cols=30  Identities=17%  Similarity=0.345  Sum_probs=21.2

Q ss_pred             chhHHhhhc-----CCcCCCc---------ccCccccCCCcCcc
Q 044754          118 YSSWLRKRM-----NDEENWR---------KIKSCFVATNICSD  147 (172)
Q Consensus       118 ~~~~lQ~~~-----~~~~dW~---------~~~sC~~~~~~C~~  147 (172)
                      ..|.+|+++     ++++||.         .|.||+.....|..
T Consensus        31 ~~d~iQ~~l~CCG~~~~~Dw~~~~~~~~~~vP~SCC~~~~~C~~   74 (104)
T cd03161          31 AVDTVQRTLHCCGVENYTDWLNSPYFLEKGIPLSCCKNRSDCSP   74 (104)
T ss_pred             HHHHHHhcCcCcCCCChhhhhccccccCCCcCcccccCCCCCCc
Confidence            358899987     7899995         25688755446753

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.

>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily

Probab=89.54  E-value=0.036  Score=39.17  Aligned_cols=29  Identities=17%  Similarity=0.525  Sum_probs=20.3

Q ss_pred             chhHHhhhc-----CCcCCCc------------ccCccccC-CCcCc
Q 044754          118 YSSWLRKRM-----NDEENWR------------KIKSCFVA-TNICS  146 (172)
Q Consensus       118 ~~~~lQ~~~-----~~~~dW~------------~~~sC~~~-~~~C~  146 (172)
                      ..|.+|+++     ++++||.            .|.||+.. ...|.
T Consensus        32 ~~d~iQ~~l~CCG~~~~~Dw~~~~~~~~~~~~~vP~SCC~~~~~~C~   78 (105)
T cd03163          32 AVDYLQRQLQCCGIHNYTDWENTPWFKESKNNSVPLSCCKETFTSCT   78 (105)
T ss_pred             HHHHHHHhCcccCCCCHHHHhhchhhhcCCCCccCcCccCCCCCCcc
Confidence            358899997     7899995            25688743 34674

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.

>cd03159 TM4SF9_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily

Probab=88.95  E-value=0.033  Score=40.58  Aligned_cols=16  Identities=13%  Similarity=0.532  Sum_probs=13.3

Q ss_pred             chhHHhhhc-----CCcCCCc
Q 044754          118 YSSWLRKRM-----NDEENWR  133 (172)
Q Consensus       118 ~~~~lQ~~~-----~~~~dW~  133 (172)
                      ..|.+|+++     ++++||.
T Consensus        31 ~~D~iQ~~l~CCG~~~~~DW~   51 (121)
T cd03159          31 LIDFLQEYWQCCGARGPDDWN   51 (121)
T ss_pred             HHHHHHHhccCCCCCChHHhc
Confidence            358899997     7999995

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.

>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins

Probab=86.31  E-value=2  Score=31.72  Aligned_cols=48  Identities=21%  Similarity=0.410  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHH
Q 044754           10 VVLNVVTFLLSVFIVWFGVLLITTEATECDKFLQKPVLLLGFFIMIISL   58 (172)
Q Consensus        10 ~~~N~l~~l~G~~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~vs~   58 (172)
                      .++-++.+++|.+++.+|..+....- +....-.++++++|+++++=|+
T Consensus        44 I~la~~Lli~G~~li~~g~l~~~~~i-~~~~~~~~~llilG~L~fIPG~   91 (115)
T PF05915_consen   44 IALAVFLLIFGTVLIIIGLLLFFGHI-DGDRDRGWALLILGILCFIPGF   91 (115)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccc-CCCCcccchHHHHHHHHHhccH
Confidence            44556778899999999988876541 1112234688999999887664

The function of this currently unknown.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=84.62  E-value=2.5  Score=33.05  Aligned_cols=20  Identities=10%  Similarity=0.531  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 044754           11 VLNVVTFLLSVFIVWFGVLL   30 (172)
Q Consensus        11 ~~N~l~~l~G~~ll~~Giw~   30 (172)
                      +.+++..++|+++++.||-.
T Consensus         6 i~~i~~iilgilli~~gI~~   25 (191)
T PF04156_consen    6 IISIILIILGILLIASGIAA   25 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34555556666655555544

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family

Probab=84.40  E-value=0.084  Score=35.96  Aligned_cols=22  Identities=18%  Similarity=0.490  Sum_probs=17.4

Q ss_pred             hhHHhhhc-----CCcCCCcc--cCcccc
Q 044754          119 SSWLRKRM-----NDEENWRK--IKSCFV  140 (172)
Q Consensus       119 ~~~lQ~~~-----~~~~dW~~--~~sC~~  140 (172)
                      .|.+|+++     ++++||..  |.||+.
T Consensus        32 ~d~iQ~~l~CCG~~~~~Dw~~~vP~SCC~   60 (86)
T cd03164          32 WDMIQSNLQCCGINGTTDWGSGVPSSCCS   60 (86)
T ss_pred             HHHHHHHhcCCCCCChhhhCCCCChhhcC
Confidence            58899997     79999964  568864

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.

>cd03160 CD37_CD82_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family

Probab=84.14  E-value=0.12  Score=37.29  Aligned_cols=15  Identities=7%  Similarity=0.525  Sum_probs=12.7

Q ss_pred             hhHHhhhc-----CCcCCCc
Q 044754          119 SSWLRKRM-----NDEENWR  133 (172)
Q Consensus       119 ~~~lQ~~~-----~~~~dW~  133 (172)
                      .|.+|+++     +++.||.
T Consensus        36 ~d~iQ~~l~CCG~~~~~Dw~   55 (117)
T cd03160          36 WDYVQFQLQCCGWTGPQDWT   55 (117)
T ss_pred             HHHHHhhCcccCCCCchhHH
Confidence            58899997     7899995

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptos

>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family

Probab=84.14  E-value=0.099  Score=37.93  Aligned_cols=15  Identities=20%  Similarity=0.703  Sum_probs=12.7

Q ss_pred             hhHHhhhc-----CCcCCCc
Q 044754          119 SSWLRKRM-----NDEENWR  133 (172)
Q Consensus       119 ~~~lQ~~~-----~~~~dW~  133 (172)
                      .|.+|+++     +++.||.
T Consensus        32 ~d~lQ~~l~CCG~~~~~Dw~   51 (119)
T cd03158          32 IDFVQKEFKCCGGDDYRDWS   51 (119)
T ss_pred             HHHHHHHccCCCCCChhhcc
Confidence            58899997     7899995

Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00