Citrus Sinensis ID: 044770
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | 2.2.26 [Sep-21-2011] | |||||||
| Q940Q2 | 534 | Pentatricopeptide repeat- | yes | no | 0.995 | 0.865 | 0.681 | 0.0 | |
| Q9XI21 | 594 | Pentatricopeptide repeat- | no | no | 0.965 | 0.754 | 0.266 | 3e-45 | |
| Q9C977 | 596 | Pentatricopeptide repeat- | no | no | 0.965 | 0.751 | 0.260 | 9e-45 | |
| O22714 | 491 | Pentatricopeptide repeat- | no | no | 0.924 | 0.873 | 0.278 | 4e-34 | |
| Q9LRP6 | 610 | Pentatricopeptide repeat- | no | no | 0.950 | 0.722 | 0.246 | 5e-30 | |
| Q9SY07 | 532 | Pentatricopeptide repeat- | no | no | 0.954 | 0.832 | 0.232 | 1e-25 | |
| Q8LPS6 | 524 | Pentatricopeptide repeat- | no | no | 0.851 | 0.753 | 0.230 | 3e-24 | |
| Q84JR3 | 492 | Pentatricopeptide repeat- | no | no | 0.963 | 0.908 | 0.216 | 1e-22 | |
| Q93WC5 | 502 | Pentatricopeptide repeat- | no | no | 0.946 | 0.874 | 0.235 | 1e-22 | |
| Q9FZ24 | 537 | Pentatricopeptide repeat- | no | no | 0.948 | 0.819 | 0.217 | 5e-22 |
| >sp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590, mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/462 (68%), Positives = 387/462 (83%)
Query: 1 IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
IE+LP+G VGSA QSWM +GFPVH G+++H+INRLRKL NKRALE+MEW+IRERPYR
Sbjct: 72 IEKLPKGVTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWIIRERPYRL 131
Query: 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
EL+YSYLLEFT+K HG+SQGEKLF +P+++QNELLYNNLVIACLD+GVI+L+LEYMKK
Sbjct: 132 GELEYSYLLEFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKK 191
Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
MR LG+ S+LV+NRLII NS+PGRRK I L MKADK PHVST+HILMK+EAN+HN
Sbjct: 192 MRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHN 251
Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
I+G++K + MK++ VEPNEVSYCILA AHAVARLYTVAE Y E +EKS+TG+NWSTLD+
Sbjct: 252 IDGVLKAFDGMKKAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSITGDNWSTLDI 311
Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
L+ILYG L K K+L R W ++ +VRSKSY+LA EAF R+ + RAEELWLEM++VK
Sbjct: 312 LMILYGRLGKEKELARTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAEELWLEMKNVKG 371
Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
LK TEQ+NS++SVYCK+G I+KA G+ +EM+ NG KPN+ITYRHLALGC K+ L++E K
Sbjct: 372 LKETEQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLMKEALK 431
Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
+E+G+ L T+K + SSTPWLETTLSIIE FAEKGDV N+E LFEE+K A Y +Y FVYN
Sbjct: 432 NIEMGLNLKTSKSIGSSTPWLETTLSIIECFAEKGDVENSEKLFEEVKNAKYNRYAFVYN 491
Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
L KAYVKAK+ DPNL +RM+LGGARPDAE+YSLLKL EQ++
Sbjct: 492 ALFKAYVKAKVYDPNLFKRMVLGGARPDAESYSLLKLVEQYK 533
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XI21|PPR44_ARATH Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 122/457 (26%), Positives = 236/457 (51%), Gaps = 9/457 (1%)
Query: 7 GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
G VGSA W+ +G +R E ++ +LRK ++ RAL++ EW+ + + +E DY+
Sbjct: 139 GLSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDENKQFEMEERDYA 198
Query: 67 YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
L+ K G +GE IP+ ++ EL+Y L+ + ++ + KM+ LG
Sbjct: 199 CRLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGF 258
Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
+S N+++IL ++K I ++L ++ + + P+++T+ IL+ + + ++I G+ +
Sbjct: 259 PLSTFTCNQMLILYKRVDKKK-IADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQ 317
Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
+ MK VE + + ++A +A A L AE ++ +E N L+ +YG
Sbjct: 318 IVETMKSEGVELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKDLLSVYG 377
Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
YL + ++ R+W +E P R + AI AFG+I +V AE ++ ++ + ++
Sbjct: 378 YLQREDEVRRVWKICEENP--RYNEVLAAILAFGKIDKVKDAEAVFEKVLKMSHRVSSNV 435
Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
Y+ ++ VY + + + L+K+MS +GC A+T+ + ++ VE+ +L
Sbjct: 436 YSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEVEKAESSLS--- 492
Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
K I +K+++ P + + + ++ + +GDV N E +F+ +K+A Y + Y TLI+AY
Sbjct: 493 KAIQSKQIK---PLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGYQSRFWAYQTLIQAY 549
Query: 427 VKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
V AK + RM P+ + L A+ F+K
Sbjct: 550 VNAKAPAYGMKERMKADNIFPNKRLAAQLAKADPFKK 586
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (459), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 119/457 (26%), Positives = 234/457 (51%), Gaps = 9/457 (1%)
Query: 7 GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
G +GSA W+ EG + R EI ++ +LR+ ++ RAL++ EW+ + E DY+
Sbjct: 141 GLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTERDYA 200
Query: 67 YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
L+ T+K G+ +GE IPK ++ E+LY L+ C+ G +K S KM+ LG
Sbjct: 201 SRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDLGF 260
Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
+S +++++L+ R+K I ++L M+ + + P + T+ IL+ ++ ++I G+ +
Sbjct: 261 PLSGFTCDQMLLLHKRIDRKK-IADVLLLMEKENIKPSLLTYKILIDVKGATNDISGMEQ 319
Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
+ MK VE + + + A ++ A L AE ++ +E N L+ +Y
Sbjct: 320 ILETMKDEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLSIYA 379
Query: 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
L + +++RIW + P + + AI+AFG++ +V AE ++ ++ + + ++
Sbjct: 380 SLGREDEVKRIWKICESKPYF--EESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSST 437
Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
Y+ ++ VY + + K L+K M+ +GC+ A T+ L ++ VE+ L+
Sbjct: 438 YSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLDKAS 497
Query: 367 KLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426
K TK + +S + I++ ++++GDV N E +F ++++A YT + L++AY
Sbjct: 498 KQSHTKLMMNSFMY------IMDEYSKRGDVHNTEKIFLKMREAGYTSRLRQFQALMQAY 551
Query: 427 VKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
+ AK + R+ P+ + L + F+K
Sbjct: 552 INAKSPAYGMRDRLKADNIFPNKSMAAQLAQGDPFKK 588
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 124/445 (27%), Positives = 212/445 (47%), Gaps = 16/445 (3%)
Query: 24 VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEK 83
V + E+ +I +LR L AL++ E V+ ER D + L+ K I+ GE
Sbjct: 53 VFKWEVGDTIKKLRNRGLYYPALKLSE-VMEERGMNKTVSDQAIHLDLVAKAREITAGEN 111
Query: 84 LFCCIPKDYQNELLYNNLVIACLDKGVIKLSLE-YMKKMRVLGHSISYLVFNRLIILNSS 142
F +P+ + EL Y +L + C K ++ E + KM+ L + S + +N L+ L +
Sbjct: 112 YFVDLPETSKTELTYGSL-LNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTK 170
Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS-EVEPNEV 201
G + +P +++++KA+ V P T+++ M+ A ++I G+ +V +M R V P+
Sbjct: 171 TGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWT 230
Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
+Y +A+ + A L AE ++ LE T +++ LI LYG L K ++ RIW ++
Sbjct: 231 TYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSL 290
Query: 262 Q-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
+ +P + +Y+ I+ ++ + AE L+ E Q+ N +I Y + G I
Sbjct: 291 RLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLI 350
Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG--FKALELGMKLITTKKVRSST 378
KA+ L ++ G K NA T+ F V+ G +ALE K ++ K
Sbjct: 351 QKANELKEKAPRRGGKLNAKTWE-----IFMDYYVKSGDMARALECMSKAVSIGK-GDGG 404
Query: 379 PWL---ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN 435
WL ET +++ F +K DV AENL E LK ++ LI+ Y A + P
Sbjct: 405 KWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGKSHPA 464
Query: 436 LLRRMILGGARPDAETYSLLKLAEQ 460
+ RR+ + + T LL Q
Sbjct: 465 MRRRLKMENVEVNEATKKLLDEVSQ 489
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRP6|PP234_ARATH Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 113/458 (24%), Positives = 217/458 (47%), Gaps = 17/458 (3%)
Query: 10 VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
V + W++EG + + E+ +I+ LRK + L++ EW+ + E +Y+ L
Sbjct: 157 VKHVLEKWVKEGKDLSQAEVTLAIHNLRKRKSYAMCLQLWEWLGANTQFEFTEANYASQL 216
Query: 70 EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
+ K H + + E IP+ + E++Y L+ C+ K + + + KM+ L S
Sbjct: 217 DLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFPTS 276
Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
N+L++L S R+K I ++L M+ + + P +T+H L+ + +I G+ K+
Sbjct: 277 VFACNQLLLLYSMHDRKK-ISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKIVE 335
Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE-KSMTGNNWSTLDVLIILYGYL 248
+K +E + ILA + A L A+ ++ +E K + W L+ LY +
Sbjct: 336 TIKEEGIELDPELQSILAKYYIRAGLKERAQDLMKEIEGKGLQQTPW-VCRSLLPLYADI 394
Query: 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
++ R+ V + P R + + AI+A+G++ +V AE ++ + ++ Y
Sbjct: 395 GDSDNVRRLSRFVDQNP--RYDNCISAIKAWGKLKEVEEAEAVFERLVEKYKIFPMMPYF 452
Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG-MK 367
+++ +Y +N + K L+K M G T+ LV+ KA E+G +
Sbjct: 453 ALMEIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHA---------LVKLYIKAGEVGKAE 503
Query: 368 LITTKKVRSST--PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
LI + + + P T ++I+E +A++GDV N E +F ++K+A+Y Y T++ A
Sbjct: 504 LILNRATKDNKMRPMFTTYMAILEEYAKRGDVHNTEKVFMKMKRASYAAQLMQYETVLLA 563
Query: 426 YVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
Y+ AK ++ RM P+ + L F+K
Sbjct: 564 YINAKTPAYGMIERMKADNVFPNKSLAAKLAQVNPFKK 601
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 105/451 (23%), Positives = 201/451 (44%), Gaps = 8/451 (1%)
Query: 13 AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFT 72
+ W EG V + E+ + LRK++ K ALE+ EW++ + + + DY+ L+
Sbjct: 80 TIRKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLI 139
Query: 73 IKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV 132
K G++ EK F +P + +L+ + + + + +KM G S L
Sbjct: 140 SKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLP 199
Query: 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192
+N ++ + S G+ + +P +++++K + +P + T+++ + A+ +++EG KVY K
Sbjct: 200 YNHMLSMYISRGQFEKVPVLIKELKI-RTSPDIVTYNLWLTAFASGNDVEGAEKVYLKAK 258
Query: 193 RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252
++ P+ V+Y +L +A A ++ +EK ++ N LI L+ L
Sbjct: 259 EEKLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDKD 318
Query: 253 DLERIWATVQ-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311
+ W V+ + Y+ I A ++ + +A+ L+ E +SV N ++
Sbjct: 319 GVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLIL 378
Query: 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371
+ Y + + + G P+ T+ L K +E K L+ K I +
Sbjct: 379 AEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDME---KVLDCFGKAIDS 435
Query: 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431
V+ T + + E+G+V AE L L+KA Y T +YN+L++ Y KA
Sbjct: 436 --VKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVN-TQLYNSLLRTYAKAGE 492
Query: 432 NDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
+ RM D ET L++L Q +
Sbjct: 493 MALIVEERMAKDNVELDEETKELIRLTSQMR 523
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/407 (23%), Positives = 182/407 (44%), Gaps = 12/407 (2%)
Query: 10 VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVI-RERPYRPKELDYSYL 68
S W + G + + E+ + LRK + +ALEV +W+ R +R D +
Sbjct: 83 AASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLSASDAAIQ 142
Query: 69 LEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSI 128
L+ K GI E+ F +P+++++ +Y +L+ A + + + + MR G+++
Sbjct: 143 LDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYAL 202
Query: 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188
L FN ++ L + + ++ +MK + + +++I + + ++E + VY
Sbjct: 203 HPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVY 262
Query: 189 SDMKRS-EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247
MK + PN ++ +AT + AE + +E +TG N L+ LYG
Sbjct: 263 QQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGS 322
Query: 248 LAKGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306
L K+L R+W + + P++ + Y + + R+ + AE+++ E VK
Sbjct: 323 LGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRI 382
Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366
N +++ Y KN ++ A GL M G KP++ T+ LA+G + + E L
Sbjct: 383 PNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAF 442
Query: 367 KLITTKKVRSSTPWLETTLSIIEIFA---EKGDVGNAENLFEELKKA 410
S+ W L + F E+ DV + E + E L+++
Sbjct: 443 ------SAEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQS 483
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/458 (21%), Positives = 210/458 (45%), Gaps = 11/458 (2%)
Query: 5 PRGEPVGSAF---QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK 61
P G+P S + Q+W++ G V E+ ++ LR+ + ALEV +W+
Sbjct: 33 PLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFS 92
Query: 62 ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121
+++ L+ + +G E+ F + + Y+N+ Y L+ + + ++ SL + +KM
Sbjct: 93 PTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKM 152
Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
+ +G S L +N ++ L ++ G+ + +P +L +MK + VAP ++ I + +++
Sbjct: 153 KEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDL 212
Query: 182 EGLMKVYSDM-KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
E + DM +R ++ + +Y + A + A ++ E + + +
Sbjct: 213 ERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKDGEGYNH 272
Query: 241 LIILYGYLAKGKDLERIWATVQELPNVR-SKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
LI LY L K ++ R+W +++ R ++ Y+ +++ +I + AEE+ E +S
Sbjct: 273 LITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSG 332
Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
N+VI Y +KA +L++++ G ++ +A + +E F
Sbjct: 333 NCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAF 392
Query: 360 KALELGMKL-ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418
K ++ + + + ++K R P L S++ ++G + E+ L+ +
Sbjct: 393 KCMKTALGVEVGSRKWR---PGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNKQ-M 448
Query: 419 YNTLIKAYVK-AKINDPNLLRRMILGGARPDAETYSLL 455
Y+ L+KA ++ N LL+RM D ET +L
Sbjct: 449 YHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVIL 486
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 107/455 (23%), Positives = 195/455 (42%), Gaps = 16/455 (3%)
Query: 7 GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
G + ++ EG PV + ++ LRK + +RALE+ EW+ R+ D++
Sbjct: 53 GGKMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWMERKEIAFTGS-DHA 111
Query: 67 YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLV-IACLDKGVIKLSLEYMKKMRVLG 125
L K+ G+ E F + +N+ Y +L+ C++K +K + + M L
Sbjct: 112 IRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHF-ENMVDLN 170
Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
H + L FN L+ + G+ + +P ++ MK + P T+ + ++ + +++G+
Sbjct: 171 HVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVE 230
Query: 186 KVYSDMK-RSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244
KV +MK E + ++ LA + LY AE +++LE +M + LI L
Sbjct: 231 KVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNPDVRDCYHFLINL 290
Query: 245 YGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303
Y +A ++ R+W +++ PNV + SY+ + A ++ + ++++ E +S
Sbjct: 291 YTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYD 350
Query: 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363
N IS Y K ++A + +M CK R L + N +
Sbjct: 351 MRMANVAISSYLKQNMYEEAEAVFNG-AMKKCKGQFSKARQLLMMHLLKN------DQAD 403
Query: 364 LGMKLITTKKVRSSTPWL---ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
L +K + W E S F E DV AE + L K + + Y
Sbjct: 404 LALKHFEAAVLDQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLS-SETYT 462
Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
L+K Y+ A P++ +R+ G D E LL
Sbjct: 463 LLMKTYLAAGKACPDMKKRLEEQGILVDEEQECLL 497
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 100/460 (21%), Positives = 204/460 (44%), Gaps = 20/460 (4%)
Query: 7 GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
G V ++ EG V + ++F LRK + + A E+ +W + +R D++
Sbjct: 84 GGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDW-MEKRKMTFSVSDHA 142
Query: 67 YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIAC----LDKGVIKLSLEYMKKMR 122
L+ K G+ E F + +N ++ C L++ K E M ++
Sbjct: 143 ICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELN 202
Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
+ +S L FN ++ + + + +P ++ MK ++P T+ I M+ + ++++
Sbjct: 203 FVNNS---LPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLD 259
Query: 183 GLMKVYSDM-KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
GL K+ +M K SE + ++ LA + A LY A++ ++++E+ M NN + L
Sbjct: 260 GLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFL 319
Query: 242 IILYGYLAKGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
+ LY ++KG ++ R+W ++++ P V + SY++ ++A ++ + ++++ E +S
Sbjct: 320 MSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCW 379
Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
N I+ Y K ++A +L P + + L + +++ + K
Sbjct: 380 AYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMK 439
Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG-DVGNAEN---LFEELKKANYTKYT 416
LE + + + + W +S+ + EK DV AE+ + K + T
Sbjct: 440 HLEAAVS--DSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSNWKPLDSETMT 497
Query: 417 FVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
F LIK Y A+ P++ R+ E LLK
Sbjct: 498 F----LIKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLLK 533
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | ||||||
| 225434953 | 550 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.84 | 0.794 | 0.0 | |
| 255584236 | 521 | pentatricopeptide repeat-containing prot | 0.993 | 0.884 | 0.774 | 0.0 | |
| 356557435 | 507 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.911 | 0.753 | 0.0 | |
| 224106481 | 525 | predicted protein [Populus trichocarpa] | 0.995 | 0.88 | 0.751 | 0.0 | |
| 356547249 | 507 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.911 | 0.746 | 0.0 | |
| 449450908 | 527 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.876 | 0.725 | 0.0 | |
| 15222438 | 534 | pentatricopeptide repeat-containing prot | 0.995 | 0.865 | 0.681 | 0.0 | |
| 297849054 | 536 | pentatricopeptide repeat-containing prot | 0.995 | 0.861 | 0.679 | 0.0 | |
| 8778536 | 555 | F22G5.3 [Arabidopsis thaliana] | 0.995 | 0.832 | 0.652 | 0.0 | |
| 242078281 | 521 | hypothetical protein SORBIDRAFT_07g00420 | 0.991 | 0.882 | 0.617 | 1e-171 |
| >gi|225434953|ref|XP_002281058.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/462 (79%), Positives = 412/462 (89%)
Query: 1 IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
IE+LPRGEPVG AFQSWM EG P+HRG IFH+INRLRKL+ NKRALEVMEWV+RERPYRP
Sbjct: 88 IEKLPRGEPVGLAFQSWMGEGCPIHRGHIFHAINRLRKLKFNKRALEVMEWVVRERPYRP 147
Query: 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
KELDYSYLLEFT K HGISQGEKLF +P ++QNELLYNNLVIACLDKGVI+LSL YMKK
Sbjct: 148 KELDYSYLLEFTTKLHGISQGEKLFSHVPLEFQNELLYNNLVIACLDKGVIRLSLAYMKK 207
Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
MR LGH ISYLVFNRLIIL+SSP RRK IP IL QMKADKVA HVST++ILMKIEAN+HN
Sbjct: 208 MRELGHPISYLVFNRLIILHSSPHRRKIIPRILTQMKADKVARHVSTYNILMKIEANEHN 267
Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
IEGL+KV+ +MK+ +VEPNEVSYC+LATAHAVA+LYTVAE YVEA+EKS+TGNNWSTLDV
Sbjct: 268 IEGLVKVFGEMKQQQVEPNEVSYCLLATAHAVAKLYTVAEAYVEAVEKSITGNNWSTLDV 327
Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
LIILYGYL K DLER W VQELP+VRSKSY+LAIEAFGRI Q++RAEELWLE++S K+
Sbjct: 328 LIILYGYLGKPTDLERTWGIVQELPHVRSKSYMLAIEAFGRIGQLNRAEELWLEIKSKKE 387
Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
LK+TEQ+NS+ISVY K+GFIDKASGL +EM MNGCK NAITYR+LALGC K+ L+EE K
Sbjct: 388 LKSTEQFNSMISVYSKHGFIDKASGLFREMEMNGCKANAITYRNLALGCLKAGLLEEALK 447
Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
LELG L + ++R S PWLETTLSI+EIF+E GDV NAE LFEELK ANYT+YTFVYN
Sbjct: 448 TLELGKGLTISTRIRKSIPWLETTLSIVEIFSENGDVENAEKLFEELKTANYTRYTFVYN 507
Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
TLIKAYVKAK+ DPNLLRRMILGGARPDAETYSL+KLAEQFQ
Sbjct: 508 TLIKAYVKAKVYDPNLLRRMILGGARPDAETYSLMKLAEQFQ 549
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255584236|ref|XP_002532856.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527393|gb|EEF29534.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/461 (77%), Positives = 408/461 (88%)
Query: 1 IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
IE+LPRGEP+G AFQSWMREGFP+HRG++FH+INRLRKL+LNKRALEVMEWVIRERPYRP
Sbjct: 59 IEKLPRGEPIGLAFQSWMREGFPIHRGDVFHAINRLRKLKLNKRALEVMEWVIRERPYRP 118
Query: 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
KELDYSYLLEFT K HGIS GEKLF IP ++QNELLYNNLVIACL+KGVI+LSLEYMKK
Sbjct: 119 KELDYSYLLEFTTKLHGISHGEKLFTRIPTEFQNELLYNNLVIACLEKGVIRLSLEYMKK 178
Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
MR LGH IS+L+FNRLIIL+SSPGRRK IP IL QMKADKV HVST++ILMKIEAN+HN
Sbjct: 179 MRELGHPISHLIFNRLIILHSSPGRRKMIPKILTQMKADKVVRHVSTYNILMKIEANEHN 238
Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
+EGL+KV+ +MKR EVEPNEVS+CILA AHAVARLYTVAE YVEA+EKS TG+NWSTLDV
Sbjct: 239 VEGLIKVFGEMKRLEVEPNEVSFCILAIAHAVARLYTVAEAYVEAVEKSYTGDNWSTLDV 298
Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
LIILYGYL KGK L+RIW TV+ELP+VRSKSY+LAIEAFGRI Q+ RAEELWLEM+S+K
Sbjct: 299 LIILYGYLRKGKKLDRIWGTVKELPHVRSKSYILAIEAFGRIGQLGRAEELWLEMKSLKG 358
Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
LK+TEQ+NS++S+YCK G + KA+ + +EM NGCKPNAIT+RHLALGC K+ LVEE K
Sbjct: 359 LKSTEQFNSMLSIYCKCGLVKKATDIFREMDRNGCKPNAITFRHLALGCLKAELVEEALK 418
Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
LE+GM T+ K+++S PWLETT SI+EIFAEKGDV NAE FEEL KA Y +YTFVYN
Sbjct: 419 TLEMGMDFTTSNKIKNSIPWLETTFSIVEIFAEKGDVANAEKFFEELHKAKYARYTFVYN 478
Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQF 461
TLIKAYVKAK+ P LLRRMILGGARPDAETYSL+KL EQF
Sbjct: 479 TLIKAYVKAKVYVPYLLRRMILGGARPDAETYSLIKLIEQF 519
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356557435|ref|XP_003547021.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/462 (75%), Positives = 408/462 (88%)
Query: 1 IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
IE+LP+GE VGSAF+SWMR+G PVH G+IFH+INRLRKL +NKRAL+VMEWVIRERPYRP
Sbjct: 45 IEKLPKGESVGSAFRSWMRDGLPVHGGDIFHAINRLRKLNMNKRALQVMEWVIRERPYRP 104
Query: 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
+ELDYSYL+EFT K HGIS GEKLF IP ++Q+ELLYNNLVIACLDKGVIKLSLEYMKK
Sbjct: 105 RELDYSYLVEFTTKLHGISHGEKLFSRIPVEFQSELLYNNLVIACLDKGVIKLSLEYMKK 164
Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
MR LG IS+LVFNRLIIL+SSPGRRK IP +L QMKADKV PHVST++ILMKIEAN+HN
Sbjct: 165 MRELGFPISHLVFNRLIILHSSPGRRKMIPKLLTQMKADKVTPHVSTYNILMKIEANEHN 224
Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
+E L+KV+ MK ++VEPNE+SYCILA AHAVARLYT E YVEA+EKS+TGNNWSTLDV
Sbjct: 225 LENLVKVFGRMKVAQVEPNEISYCILAIAHAVARLYTATEAYVEAVEKSITGNNWSTLDV 284
Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
L++LYGYL K+LER+WAT+QELP++RSKSY+LAIEAFGRI Q++RAEE+WLEM+S K
Sbjct: 285 LLMLYGYLGNQKELERVWATIQELPSIRSKSYMLAIEAFGRIGQLNRAEEIWLEMKSTKG 344
Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
LK+ EQ+NS++SVYCK+GFID+A+ L K M +GCKPNAITY LALGC KS + E+ K
Sbjct: 345 LKSVEQFNSMMSVYCKHGFIDRAAKLYKNMKASGCKPNAITYHQLALGCLKSGMAEQALK 404
Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
L+LG++L +K+VR+STPWLETTLSI+EIFAEKGDVGN E LFEE KA Y +YTFVYN
Sbjct: 405 TLDLGLRLTISKRVRNSTPWLETTLSIVEIFAEKGDVGNVERLFEEFHKAKYCRYTFVYN 464
Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
TLIKAYVKAKI +PNLL+RMILGGARPDAETYSLLK+AEQFQ
Sbjct: 465 TLIKAYVKAKIYNPNLLKRMILGGARPDAETYSLLKIAEQFQ 506
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224106481|ref|XP_002314181.1| predicted protein [Populus trichocarpa] gi|222850589|gb|EEE88136.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/462 (75%), Positives = 409/462 (88%)
Query: 1 IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
IE+LPRGE VG AFQSWM EGFP+HRG++FH+INRLRKL+LNKRALEVMEWV+RERPYR
Sbjct: 63 IEKLPRGESVGYAFQSWMGEGFPIHRGDVFHTINRLRKLRLNKRALEVMEWVVRERPYRL 122
Query: 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
KELDYSYLLEFT K+HGIS GEKLF +P ++QNELLYNNLVI+CL+KGVI+LSL+YMKK
Sbjct: 123 KELDYSYLLEFTTKHHGISHGEKLFLHVPSEFQNELLYNNLVISCLEKGVIRLSLDYMKK 182
Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
MR GH ISYL+FNRLIIL+SSPG RK IP IL QM+ADKV PHVST++ILMKIEAN+HN
Sbjct: 183 MREQGHPISYLIFNRLIILHSSPGSRKMIPKILAQMRADKVVPHVSTYNILMKIEANEHN 242
Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
I+GL+KV++DMKR +VEPNEVS+CILATAHA ARLYTVAE YVEA+EKS +G+NWSTLDV
Sbjct: 243 IDGLVKVFNDMKRFKVEPNEVSFCILATAHAAARLYTVAEAYVEAVEKSCSGDNWSTLDV 302
Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
LIILYG+L K K+LER W V ELP+VRSKSY+LAIEA+G+I Q+SRAEELWLEM+S+
Sbjct: 303 LIILYGHLGKEKELERTWGIVLELPHVRSKSYMLAIEAYGKIGQLSRAEELWLEMKSIHG 362
Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
L++TEQ+NS++SVYCK+G I KA+G +EM +NGCK N+IT+RHLALGC K+NLVEE K
Sbjct: 363 LRSTEQFNSMLSVYCKHGLIKKATGNFREMEINGCKANSITFRHLALGCLKANLVEEALK 422
Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
LE+G L T+ +V++STPWLETTLSIIE+FAEKGDV N E LFEEL KA Y ++TFV+N
Sbjct: 423 TLEMGKNLTTSNRVKNSTPWLETTLSIIELFAEKGDVVNVEKLFEELAKAKYIRHTFVFN 482
Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
LIKAYVKAKI PNLLRRMILGGARPDAETYSL+KLAEQF+
Sbjct: 483 ILIKAYVKAKIYSPNLLRRMILGGARPDAETYSLIKLAEQFR 524
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547249|ref|XP_003542028.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/462 (74%), Positives = 405/462 (87%)
Query: 1 IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
IERLP+GE VG+AF SWMR+G PVH ++FH++NRLRKL +NKRAL+VMEWVIRERPYRP
Sbjct: 45 IERLPKGESVGAAFCSWMRDGLPVHGVDVFHAVNRLRKLNMNKRALQVMEWVIRERPYRP 104
Query: 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
KELDYSYL+EFT K HGIS GEKLF IP ++QNELLYNNLVIACLDKGVIKLSLEYMKK
Sbjct: 105 KELDYSYLVEFTTKLHGISHGEKLFSRIPVEFQNELLYNNLVIACLDKGVIKLSLEYMKK 164
Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
MR LG IS+LVFNRLIIL+SSPGRRK IP +L QMKADKV PHVST++ILMKIEAN+HN
Sbjct: 165 MRELGFLISHLVFNRLIILHSSPGRRKMIPKLLTQMKADKVTPHVSTYNILMKIEANEHN 224
Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
+E L+K +S MK ++V PNE+SYCILA AHAVARLYT E YVEA+EKS+TGNNWSTLDV
Sbjct: 225 LENLVKFFSRMKVAQVAPNEISYCILAIAHAVARLYTATEAYVEAVEKSITGNNWSTLDV 284
Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
L++LYGYL K+LER+WAT++ELP+VRSKSY+LAIEAFGRI Q+++AEELWLEM+S K
Sbjct: 285 LLMLYGYLGNQKELERVWATIRELPSVRSKSYMLAIEAFGRIGQLNQAEELWLEMESTKG 344
Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
LK+ EQ+NS++SVYCK+GFI KA+ L K M +GCKPNAITYR LALGC KS + E+G K
Sbjct: 345 LKSVEQFNSMMSVYCKHGFIGKAAKLYKNMKASGCKPNAITYRQLALGCLKSGMAEQGLK 404
Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
L+LG++L +K+VR+S PWLETTLSI+EIFAEKGD+GN E LFEE K+ Y +YTFVYN
Sbjct: 405 TLDLGLRLTISKRVRNSIPWLETTLSIVEIFAEKGDMGNVERLFEEFHKSKYCRYTFVYN 464
Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
TLIKAYVKAKI DPNLL+RMILGGARPDAETYSLLK+AEQF+
Sbjct: 465 TLIKAYVKAKIYDPNLLKRMILGGARPDAETYSLLKIAEQFR 506
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450908|ref|XP_004143204.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial-like [Cucumis sativus] gi|449517541|ref|XP_004165804.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/463 (72%), Positives = 403/463 (87%), Gaps = 1/463 (0%)
Query: 1 IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
IER+P+GE VG AF+SWM +GFP+HRG+IFH+INRLRKL+ NKRALEVMEWVIRE+PYR
Sbjct: 64 IERIPKGELVGYAFRSWMGDGFPIHRGDIFHAINRLRKLERNKRALEVMEWVIREKPYRI 123
Query: 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
ELDYSYLLEFTIK+HGISQGEKLF IP ++Q ELL+NNLVIACLDKG I+LSL YM+K
Sbjct: 124 NELDYSYLLEFTIKHHGISQGEKLFSNIPVEFQGELLFNNLVIACLDKGAIRLSLAYMRK 183
Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
MR +GHSIS+LVFNRLIIL+SS RRK IP IL QMKADKV HVST++ILMKIEAN+HN
Sbjct: 184 MREVGHSISHLVFNRLIILHSSFRRRKIIPKILSQMKADKVPLHVSTYNILMKIEANEHN 243
Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
IEGLM+V+SDM+R++VEPNEVSYCI+ATAHAVA+LYTV E YVEALEKS+ GNNWST DV
Sbjct: 244 IEGLMRVFSDMRRAKVEPNEVSYCIVATAHAVAKLYTVVEAYVEALEKSIAGNNWSTYDV 303
Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
LIILYGYL K K+LER W +Q P++ SKS++LAIEAFGRI +SRAEELWLEM++ +
Sbjct: 304 LIILYGYLNKEKELERTWGIIQGFPHIPSKSFILAIEAFGRIGLLSRAEELWLEMKTKRG 363
Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
+KAT+Q+NS++SVYC++G I KA+ + +++ NGCKPNAIT+RHLA GC K+ LVEE K
Sbjct: 364 IKATDQFNSILSVYCRHGLIKKATEIFRKIEANGCKPNAITFRHLAFGCLKAGLVEEALK 423
Query: 361 ALELGMKLI-TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419
L+LG +TK VR STPWLETTLS+IEI AE+GD+ N E LF+ELK+A YT+YTFVY
Sbjct: 424 TLDLGSNTTSSTKIVRKSTPWLETTLSMIEILAERGDIENTEKLFKELKEAKYTRYTFVY 483
Query: 420 NTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
NTLIKAYVKAKI++PNLLRRMI+GGARPD+ETYSL+KL+EQFQ
Sbjct: 484 NTLIKAYVKAKIHNPNLLRRMIVGGARPDSETYSLIKLSEQFQ 526
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222438|ref|NP_172238.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75163930|sp|Q940Q2.1|PPR19_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g07590, mitochondrial; Flags: Precursor gi|15809864|gb|AAL06860.1| At1g07590/F22G5_2 [Arabidopsis thaliana] gi|332190025|gb|AEE28146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/462 (68%), Positives = 387/462 (83%)
Query: 1 IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
IE+LP+G VGSA QSWM +GFPVH G+++H+INRLRKL NKRALE+MEW+IRERPYR
Sbjct: 72 IEKLPKGVTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWIIRERPYRL 131
Query: 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
EL+YSYLLEFT+K HG+SQGEKLF +P+++QNELLYNNLVIACLD+GVI+L+LEYMKK
Sbjct: 132 GELEYSYLLEFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKK 191
Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
MR LG+ S+LV+NRLII NS+PGRRK I L MKADK PHVST+HILMK+EAN+HN
Sbjct: 192 MRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHN 251
Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
I+G++K + MK++ VEPNEVSYCILA AHAVARLYTVAE Y E +EKS+TG+NWSTLD+
Sbjct: 252 IDGVLKAFDGMKKAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSITGDNWSTLDI 311
Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
L+ILYG L K K+L R W ++ +VRSKSY+LA EAF R+ + RAEELWLEM++VK
Sbjct: 312 LMILYGRLGKEKELARTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAEELWLEMKNVKG 371
Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
LK TEQ+NS++SVYCK+G I+KA G+ +EM+ NG KPN+ITYRHLALGC K+ L++E K
Sbjct: 372 LKETEQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLMKEALK 431
Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
+E+G+ L T+K + SSTPWLETTLSIIE FAEKGDV N+E LFEE+K A Y +Y FVYN
Sbjct: 432 NIEMGLNLKTSKSIGSSTPWLETTLSIIECFAEKGDVENSEKLFEEVKNAKYNRYAFVYN 491
Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
L KAYVKAK+ DPNL +RM+LGGARPDAE+YSLLKL EQ++
Sbjct: 492 ALFKAYVKAKVYDPNLFKRMVLGGARPDAESYSLLKLVEQYK 533
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297849054|ref|XP_002892408.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338250|gb|EFH68667.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/462 (67%), Positives = 386/462 (83%)
Query: 1 IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
IE+LP+G VGSA QSWM +GFPVH G+++H+INRLRKL NKRALE+MEW+IRERPYRP
Sbjct: 74 IEKLPKGVTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWIIRERPYRP 133
Query: 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
EL+YSYLLEFT+K HG+SQGEKLF +P+++QNELLYNNLVIACLD+GVI+L+LEYMKK
Sbjct: 134 GELEYSYLLEFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKK 193
Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
MR LG+ S+LV+NRLII NS+PGRRK I L MKADK PHVST+HILMK+EAN+HN
Sbjct: 194 MRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHN 253
Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
I+G++K + MK++ VEPNEVSYCILA AHAVARLYTVAE Y E +EKS+TGNNWSTLD+
Sbjct: 254 IDGVLKAFDGMKKAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSVTGNNWSTLDI 313
Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
L+ILYG L K K+L R W ++ +VRSKSY+LA EAF ++ + RAEELWLEM++V+
Sbjct: 314 LMILYGRLGKEKELVRTWNVIRGFHHVRSKSYLLATEAFAQVGNLDRAEELWLEMKNVRG 373
Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
LK TEQ+NS++SVYCK+G I+KA G+ +EM +G KPN+ITYRHLALGC K+ L++E K
Sbjct: 374 LKETEQFNSLLSVYCKDGLIEKAIGVFREMMGDGFKPNSITYRHLALGCAKAKLMKEALK 433
Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
+E+G L T+ +RSSTPWLETTLSIIE FAEKGDV N+E LFEE+K A Y +Y FVYN
Sbjct: 434 NIEMGSNLKTSNSIRSSTPWLETTLSIIECFAEKGDVENSEKLFEEVKNAKYNRYAFVYN 493
Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
L KAYVKAK+ DPNL +RM+LGGARPDAE+YSLLKL EQ++
Sbjct: 494 ALFKAYVKAKVYDPNLFKRMVLGGARPDAESYSLLKLVEQYK 535
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8778536|gb|AAF79544.1|AC022464_2 F22G5.3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/483 (65%), Positives = 387/483 (80%), Gaps = 21/483 (4%)
Query: 1 IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALE------------- 47
IE+LP+G VGSA QSWM +GFPVH G+++H+INRLRKL NKRALE
Sbjct: 72 IEKLPKGVTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALEMSNLGMLLDRNEF 131
Query: 48 --------VMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYN 99
+MEW+IRERPYR EL+YSYLLEFT+K HG+SQGEKLF +P+++QNELLYN
Sbjct: 132 LLMKILLNLMEWIIRERPYRLGELEYSYLLEFTVKLHGVSQGEKLFTRVPQEFQNELLYN 191
Query: 100 NLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD 159
NLVIACLD+GVI+L+LEYMKKMR LG+ S+LV+NRLII NS+PGRRK I L MKAD
Sbjct: 192 NLVIACLDQGVIRLALEYMKKMRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKAD 251
Query: 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219
K PHVST+HILMK+EAN+HNI+G++K + MK++ VEPNEVSYCILA AHAVARLYTVA
Sbjct: 252 KATPHVSTYHILMKLEANEHNIDGVLKAFDGMKKAGVEPNEVSYCILAMAHAVARLYTVA 311
Query: 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF 279
E Y E +EKS+TG+NWSTLD+L+ILYG L K K+L R W ++ +VRSKSY+LA EAF
Sbjct: 312 EAYTEEIEKSITGDNWSTLDILMILYGRLGKEKELARTWNVIRGFHHVRSKSYLLATEAF 371
Query: 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
R+ + RAEELWLEM++VK LK TEQ+NS++SVYCK+G I+KA G+ +EM+ NG KPN+
Sbjct: 372 ARVGNLDRAEELWLEMKNVKGLKETEQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNS 431
Query: 340 ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399
ITYRHLALGC K+ L++E K +E+G+ L T+K + SSTPWLETTLSIIE FAEKGDV N
Sbjct: 432 ITYRHLALGCAKAKLMKEALKNIEMGLNLKTSKSIGSSTPWLETTLSIIECFAEKGDVEN 491
Query: 400 AENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAE 459
+E LFEE+K A Y +Y FVYN L KAYVKAK+ DPNL +RM+LGGARPDAE+YSLLKL E
Sbjct: 492 SEKLFEEVKNAKYNRYAFVYNALFKAYVKAKVYDPNLFKRMVLGGARPDAESYSLLKLVE 551
Query: 460 QFQ 462
Q++
Sbjct: 552 QYK 554
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242078281|ref|XP_002443909.1| hypothetical protein SORBIDRAFT_07g004200 [Sorghum bicolor] gi|241940259|gb|EES13404.1| hypothetical protein SORBIDRAFT_07g004200 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust.
Identities = 284/460 (61%), Positives = 373/460 (81%)
Query: 3 RLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE 62
R+ R VG+A + WM +G VHRG +FH+INRLR+ +L++ AL+VMEW++RERPY+ E
Sbjct: 61 RVERAASVGAAMRGWMADGRAVHRGHVFHAINRLRRHRLHRTALQVMEWIVRERPYKLSE 120
Query: 63 LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMR 122
LDYSYLLEFT K HGIS+ E LF +P++YQ ELLYNNLV+A LD +IK S YM+KMR
Sbjct: 121 LDYSYLLEFTAKVHGISEAESLFLRVPQEYQKELLYNNLVMAALDLDLIKHSYAYMRKMR 180
Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
L IS V+NRLIIL+SSP RRKTI IL QMKAD+V PH ST++IL+KI+AN+HNI+
Sbjct: 181 ELSLPISPYVYNRLIILHSSPSRRKTISKILYQMKADRVTPHTSTYNILLKIQANEHNID 240
Query: 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242
GL +V+SDMKR+++EPNE++Y ILA +HAVARLYTV TYVEA+E SMTG NWSTL++L+
Sbjct: 241 GLARVFSDMKRAKIEPNEITYGILAISHAVARLYTVCHTYVEAIENSMTGTNWSTLEILL 300
Query: 243 ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
ILYGYL K K+L+R W +Q+LP+VRSKS+ +AIEAFG++ + +AE++W++++S K+L
Sbjct: 301 ILYGYLGKEKELKRTWEIMQDLPHVRSKSFTVAIEAFGKVGSIDQAEKIWVQIKSTKKLS 360
Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
TEQ+NS++SVYC++G +DKAS + KEM NGC+PNAITYRHLALGC KS LV+E +
Sbjct: 361 LTEQFNSILSVYCRHGVVDKASSVFKEMRANGCQPNAITYRHLALGCLKSGLVKEALNTI 420
Query: 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422
++G K + TKKVRSSTPWLETT ++E FAE GD+ NA+ L+ EL ++ Y++ +FVYNTL
Sbjct: 421 DMGKKEVVTKKVRSSTPWLETTHLLLENFAEIGDLENAKRLYSELNESKYSRNSFVYNTL 480
Query: 423 IKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
+KAYVKAK+ +P+LLR MIL GA PDAETYSLL+L EQF+
Sbjct: 481 LKAYVKAKVYEPDLLRTMILRGAMPDAETYSLLRLIEQFK 520
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 464 | ||||||
| TAIR|locus:2024952 | 534 | AT1G07590 [Arabidopsis thalian | 0.995 | 0.865 | 0.681 | 1.4e-174 | |
| TAIR|locus:2037823 | 594 | AT1G15480 "AT1G15480" [Arabido | 0.963 | 0.752 | 0.270 | 2e-47 | |
| TAIR|locus:2034215 | 596 | PPR596 "AT1G80270" [Arabidopsi | 0.963 | 0.75 | 0.266 | 4.8e-46 | |
| TAIR|locus:2036586 | 491 | AT1G60770 [Arabidopsis thalian | 0.924 | 0.873 | 0.278 | 2.4e-37 | |
| TAIR|locus:2092565 | 610 | AT3G15590 "AT3G15590" [Arabido | 0.956 | 0.727 | 0.252 | 1.8e-36 | |
| TAIR|locus:2140220 | 532 | AT4G02820 "AT4G02820" [Arabido | 0.948 | 0.827 | 0.233 | 2.3e-31 | |
| TAIR|locus:2141360 | 502 | AT4G01990 [Arabidopsis thalian | 0.946 | 0.874 | 0.237 | 1.1e-25 | |
| TAIR|locus:2204793 | 524 | AT1G02150 [Arabidopsis thalian | 0.853 | 0.755 | 0.231 | 2.5e-25 | |
| TAIR|locus:2204808 | 537 | AT1G02370 "AT1G02370" [Arabido | 0.952 | 0.823 | 0.222 | 5e-25 | |
| TAIR|locus:504955535 | 492 | AT4G21705 "AT4G21705" [Arabido | 0.959 | 0.904 | 0.221 | 3.1e-24 |
| TAIR|locus:2024952 AT1G07590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1696 (602.1 bits), Expect = 1.4e-174, P = 1.4e-174
Identities = 315/462 (68%), Positives = 387/462 (83%)
Query: 1 IERLPRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP 60
IE+LP+G VGSA QSWM +GFPVH G+++H+INRLRKL NKRALE+MEW+IRERPYR
Sbjct: 72 IEKLPKGVTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWIIRERPYRL 131
Query: 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKK 120
EL+YSYLLEFT+K HG+SQGEKLF +P+++QNELLYNNLVIACLD+GVI+L+LEYMKK
Sbjct: 132 GELEYSYLLEFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKK 191
Query: 121 MRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180
MR LG+ S+LV+NRLII NS+PGRRK I L MKADK PHVST+HILMK+EAN+HN
Sbjct: 192 MRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHN 251
Query: 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
I+G++K + MK++ VEPNEVSYCILA AHAVARLYTVAE Y E +EKS+TG+NWSTLD+
Sbjct: 252 IDGVLKAFDGMKKAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSITGDNWSTLDI 311
Query: 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
L+ILYG L K K+L R W ++ +VRSKSY+LA EAF R+ + RAEELWLEM++VK
Sbjct: 312 LMILYGRLGKEKELARTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAEELWLEMKNVKG 371
Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
LK TEQ+NS++SVYCK+G I+KA G+ +EM+ NG KPN+ITYRHLALGC K+ L++E K
Sbjct: 372 LKETEQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLMKEALK 431
Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420
+E+G+ L T+K + SSTPWLETTLSIIE FAEKGDV N+E LFEE+K A Y +Y FVYN
Sbjct: 432 NIEMGLNLKTSKSIGSSTPWLETTLSIIECFAEKGDVENSEKLFEEVKNAKYNRYAFVYN 491
Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
L KAYVKAK+ DPNL +RM+LGGARPDAE+YSLLKL EQ++
Sbjct: 492 ALFKAYVKAKVYDPNLFKRMVLGGARPDAESYSLLKLVEQYK 533
|
|
| TAIR|locus:2037823 AT1G15480 "AT1G15480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 124/458 (27%), Positives = 240/458 (52%)
Query: 7 GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
G VGSA W+ +G +R E ++ +LRK ++ RAL++ EW+ + + +E DY+
Sbjct: 139 GLSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDENKQFEMEERDYA 198
Query: 67 YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
L+ K G +GE IP+ ++ EL+Y L+ + ++ + KM+ LG
Sbjct: 199 CRLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGF 258
Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
+S N+++IL ++K I ++L ++ + + P+++T+ IL+ + + ++I G+ +
Sbjct: 259 PLSTFTCNQMLILYKRVDKKK-IADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQ 317
Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE-KSMTGNNWSTLDVLIILY 245
+ MK VE + + ++A +A A L AE ++ +E +S+ N D+L + Y
Sbjct: 318 IVETMKSEGVELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKDLLSV-Y 376
Query: 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
GYL + ++ R+W +E P R + AI AFG+I +V AE ++ ++ + ++
Sbjct: 377 GYLQREDEVRRVWKICEENP--RYNEVLAAILAFGKIDKVKDAEAVFEKVLKMSHRVSSN 434
Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365
Y+ ++ VY + + + L+K+MS +GC A+T+ + ++ VE+ +L
Sbjct: 435 VYSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEVEKAESSLS-- 492
Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
K I +K+++ P + + + ++ + +GDV N E +F+ +K+A Y + Y TLI+A
Sbjct: 493 -KAIQSKQIK---PLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGYQSRFWAYQTLIQA 548
Query: 426 YVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
YV AK + RM P+ + L A+ F+K
Sbjct: 549 YVNAKAPAYGMKERMKADNIFPNKRLAAQLAKADPFKK 586
|
|
| TAIR|locus:2034215 PPR596 "AT1G80270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 122/458 (26%), Positives = 238/458 (51%)
Query: 7 GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
G +GSA W+ EG + R EI ++ +LR+ ++ RAL++ EW+ + E DY+
Sbjct: 141 GLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTERDYA 200
Query: 67 YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126
L+ T+K G+ +GE IPK ++ E+LY L+ C+ G +K S KM+ LG
Sbjct: 201 SRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDLGF 260
Query: 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186
+S +++++L+ R+K I ++L M+ + + P + T+ IL+ ++ ++I G+ +
Sbjct: 261 PLSGFTCDQMLLLHKRIDRKK-IADVLLLMEKENIKPSLLTYKILIDVKGATNDISGMEQ 319
Query: 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE-KSMTGNNWSTLDVLIILY 245
+ MK VE + + + A ++ A L AE ++ +E +S+ N + D+L I Y
Sbjct: 320 ILETMKDEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLSI-Y 378
Query: 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305
L + +++RIW + P + AI+AFG++ +V AE ++ ++ + + ++
Sbjct: 379 ASLGREDEVKRIWKICESKPYFEES--LAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSS 436
Query: 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365
Y+ ++ VY + + K L+K M+ +GC+ A T+ L ++ VE+ L+
Sbjct: 437 TYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLDKA 496
Query: 366 MKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
K TK + +S + I++ ++++GDV N E +F ++++A YT + L++A
Sbjct: 497 SKQSHTKLMMNSFMY------IMDEYSKRGDVHNTEKIFLKMREAGYTSRLRQFQALMQA 550
Query: 426 YVKAKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
Y+ AK + R+ P+ + L + F+K
Sbjct: 551 YINAKSPAYGMRDRLKADNIFPNKSMAAQLAQGDPFKK 588
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| TAIR|locus:2036586 AT1G60770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 124/445 (27%), Positives = 212/445 (47%)
Query: 24 VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEK 83
V + E+ +I +LR L AL++ E V+ ER D + L+ K I+ GE
Sbjct: 53 VFKWEVGDTIKKLRNRGLYYPALKLSE-VMEERGMNKTVSDQAIHLDLVAKAREITAGEN 111
Query: 84 LFCCIPKDYQNELLYNNLVIACLDKGVIKLSLE-YMKKMRVLGHSISYLVFNRLIILNSS 142
F +P+ + EL Y +L + C K ++ E + KM+ L + S + +N L+ L +
Sbjct: 112 YFVDLPETSKTELTYGSL-LNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTK 170
Query: 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS-EVEPNEV 201
G + +P +++++KA+ V P T+++ M+ A ++I G+ +V +M R V P+
Sbjct: 171 TGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWT 230
Query: 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261
+Y +A+ + A L AE ++ LE T +++ LI LYG L K ++ RIW ++
Sbjct: 231 TYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSL 290
Query: 262 Q-ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320
+ +P + +Y+ I+ ++ + AE L+ E Q+ N +I Y + G I
Sbjct: 291 RLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLI 350
Query: 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG--FKALELGMKLITTKKVRSST 378
KA+ L ++ G K NA T+ F V+ G +ALE K ++ K
Sbjct: 351 QKANELKEKAPRRGGKLNAKTWE-----IFMDYYVKSGDMARALECMSKAVSIGK-GDGG 404
Query: 379 PWL---ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN 435
WL ET +++ F +K DV AENL E LK ++ LI+ Y A + P
Sbjct: 405 KWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAGKSHPA 464
Query: 436 LLRRMILGGARPDAETYSLLKLAEQ 460
+ RR+ + + T LL Q
Sbjct: 465 MRRRLKMENVEVNEATKKLLDEVSQ 489
|
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| TAIR|locus:2092565 AT3G15590 "AT3G15590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 396 (144.5 bits), Expect = 1.8e-36, P = 1.8e-36
Identities = 115/455 (25%), Positives = 215/455 (47%)
Query: 10 VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLL 69
V + W++EG + + E+ +I+ LRK + L++ EW+ + E +Y+ L
Sbjct: 157 VKHVLEKWVKEGKDLSQAEVTLAIHNLRKRKSYAMCLQLWEWLGANTQFEFTEANYASQL 216
Query: 70 EFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS 129
+ K H + + E IP+ + E++Y L+ C+ K + + + KM+ L S
Sbjct: 217 DLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFPTS 276
Query: 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189
N+L++L S R+K I ++L M+ + + P +T+H L+ + +I G+ K+
Sbjct: 277 VFACNQLLLLYSMHDRKK-ISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKIVE 335
Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE-KSMTGNNWSTLDVLIILYGYL 248
+K +E + ILA + A L A+ ++ +E K + W L+ LY +
Sbjct: 336 TIKEEGIELDPELQSILAKYYIRAGLKERAQDLMKEIEGKGLQQTPWVCRS-LLPLYADI 394
Query: 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
++ R+ V + P R + + AI+A+G++ +V AE ++ + ++ Y
Sbjct: 395 GDSDNVRRLSRFVDQNP--RYDNCISAIKAWGKLKEVEEAEAVFERLVEKYKIFPMMPYF 452
Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
+++ +Y +N + K L+K M G T+ L K+ E G KA EL +
Sbjct: 453 ALMEIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHALVKLYIKAG--EVG-KA-ELILNR 508
Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428
T K P T ++I+E +A++GDV N E +F ++K+A+Y Y T++ AY+
Sbjct: 509 AT--KDNKMRPMFTTYMAILEEYAKRGDVHNTEKVFMKMKRASYAAQLMQYETVLLAYIN 566
Query: 429 AKINDPNLLRRMILGGARPDAETYSLLKLAEQFQK 463
AK ++ RM P+ + L F+K
Sbjct: 567 AKTPAYGMIERMKADNVFPNKSLAAKLAQVNPFKK 601
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| TAIR|locus:2140220 AT4G02820 "AT4G02820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 347 (127.2 bits), Expect = 2.3e-31, P = 2.3e-31
Identities = 105/450 (23%), Positives = 203/450 (45%)
Query: 15 QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK 74
+ W EG V + E+ + LRK++ K ALE+ EW++ + + + DY+ L+ K
Sbjct: 82 RKWKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLISK 141
Query: 75 NHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134
G++ EK F +P + +L+ + + + + +KM G S L +N
Sbjct: 142 IRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYN 201
Query: 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194
++ + S G+ + +P +++++K + +P + T+++ + A+ +++EG KVY K
Sbjct: 202 HMLSMYISRGQFEKVPVLIKELKI-RTSPDIVTYNLWLTAFASGNDVEGAEKVYLKAKEE 260
Query: 195 EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254
++ P+ V+Y +L +A A ++ +EK ++ N LI L+ L +
Sbjct: 261 KLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDKDGV 320
Query: 255 ERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313
W V+ + Y+ I A ++ + +A+ L+ E +SV N +++
Sbjct: 321 NLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILAE 380
Query: 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE-LGMKLITTK 372
Y + + + G P+ T+ L K +E K L+ G + + K
Sbjct: 381 YMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDME---KVLDCFGKAIDSVK 437
Query: 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN 432
K + ++ +E E+G+V AE L L+KA Y T +YN+L++ Y KA
Sbjct: 438 KWTVNVRLVKGACKELE---EQGNVKGAEKLMTLLQKAGYVN-TQLYNSLLRTYAKAGEM 493
Query: 433 DPNLLRRMILGGARPDAETYSLLKLAEQFQ 462
+ RM D ET L++L Q +
Sbjct: 494 ALIVEERMAKDNVELDEETKELIRLTSQMR 523
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| TAIR|locus:2141360 AT4G01990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 310 (114.2 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 108/455 (23%), Positives = 202/455 (44%)
Query: 7 GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
G + ++ EG PV + ++ LRK + +RALE+ EW+ R+ D++
Sbjct: 53 GGKMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWMERKEIAFTGS-DHA 111
Query: 67 YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIA-CLDKGVIKLSLEYMKKMRVLG 125
L K+ G+ E F + +N+ Y +L+ C++K +K + + M L
Sbjct: 112 IRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHF-ENMVDLN 170
Query: 126 HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLM 185
H + L FN L+ + G+ + +P ++ MK + P T+ + ++ + +++G+
Sbjct: 171 HVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVE 230
Query: 186 KVYSDMKRSEVEP--NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243
KV +MK +E E + ++ LA + LY AE +++LE +M + LI
Sbjct: 231 KVLDEMK-AEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNPDVRDCYHFLIN 289
Query: 244 LYGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302
LY +A ++ R+W +++ PNV + SY+ + A ++ + ++++ E +S
Sbjct: 290 LYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTY 349
Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL-GCFKSNLVEEGFKA 361
N IS Y K ++A + +M CK R L + K++ + K
Sbjct: 350 DMRMANVAISSYLKQNMYEEAEAVFNG-AMKKCKGQFSKARQLLMMHLLKNDQADLALKH 408
Query: 362 LELGMKLITTKKVRSSTPWLETTLSIIEI-FAEKGDVGNAENLFEELKKANYTKYTFVYN 420
E + + K + W +S + F E DV AE + L K + + Y
Sbjct: 409 FEAAV--LDQDK---NWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPLS-SETYT 462
Query: 421 TLIKAYVKAKINDPNLLRRMILGGARPDAETYSLL 455
L+K Y+ A P++ +R+ G D E LL
Sbjct: 463 LLMKTYLAAGKACPDMKKRLEEQGILVDEEQECLL 497
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| TAIR|locus:2204793 AT1G02150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 308 (113.5 bits), Expect = 2.5e-25, P = 2.5e-25
Identities = 93/402 (23%), Positives = 181/402 (45%)
Query: 12 SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVI-RERPYRPKELDYSYLLE 70
S W + G + + E+ + LRK + +ALEV +W+ R +R D + L+
Sbjct: 85 SVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNRGERFRLSASDAAIQLD 144
Query: 71 FTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISY 130
K GI E+ F +P+++++ +Y +L+ A + + + + MR G+++
Sbjct: 145 LIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYALHP 204
Query: 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190
L FN ++ L + + ++ +MK + + +++I + + ++E + VY
Sbjct: 205 LPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQ 264
Query: 191 MKRS-EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
MK + PN ++ +AT + AE + +E +TG N L+ LYG L
Sbjct: 265 MKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGSLG 324
Query: 250 KGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308
K+L R+W + + P++ + Y + + R+ + AE+++ E VK N
Sbjct: 325 NKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPN 384
Query: 309 SVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368
+++ Y KN ++ A GL M G KP++ T+ LA+G + + E L
Sbjct: 385 LLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAFSA 444
Query: 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410
+ R L + E E+ DV + E + E L+++
Sbjct: 445 EGSSNWRPKVLMLSGFFKLCE---EESDVTSKEAVLELLRQS 483
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| TAIR|locus:2204808 AT1G02370 "AT1G02370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 306 (112.8 bits), Expect = 5.0e-25, P = 5.0e-25
Identities = 102/458 (22%), Positives = 207/458 (45%)
Query: 7 GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS 66
G V ++ EG V + ++F LRK + + A E+ +W+ +R D++
Sbjct: 84 GGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWM-EKRKMTFSVSDHA 142
Query: 67 YLLEFTIKNHGISQGEKLFCCI-PKDYQNELLYNNLVIA-C--LDKGVIKLSLEYMKKMR 122
L+ K G+ E F + P ++ Y L+ C L++ K E M ++
Sbjct: 143 ICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELN 202
Query: 123 VLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182
+ +S L FN ++ + + + +P ++ MK ++P T+ I M+ + ++++
Sbjct: 203 FVNNS---LPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLD 259
Query: 183 GLMKVYSDM-KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241
GL K+ +M K SE + ++ LA + A LY A++ ++++E+ M NN + L
Sbjct: 260 GLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFL 319
Query: 242 IILYGYLAKGKDLERIWATVQEL-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ 300
+ LY ++KG ++ R+W ++++ P V + SY++ ++A ++ + ++++ E +S
Sbjct: 320 MSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCW 379
Query: 301 LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360
N I+ Y K ++A +L P + + L + +++ + K
Sbjct: 380 AYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMK 439
Query: 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG-DVGNAENLFEELKKANYTKYTFVY 419
LE + + + + W +S+ + EK DV AE+ + L +N+
Sbjct: 440 HLEAAVS--DSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKIL--SNWKPLDSET 495
Query: 420 NT-LIKAYVKAKINDPNLLRRMILGGARPDAETYSLLK 456
T LIK Y A+ P++ R+ E LLK
Sbjct: 496 MTFLIKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLLK 533
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| TAIR|locus:504955535 AT4G21705 "AT4G21705" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 298 (110.0 bits), Expect = 3.1e-24, P = 3.1e-24
Identities = 102/460 (22%), Positives = 213/460 (46%)
Query: 5 PRGEPVGSAF---QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK 61
P G+P S + Q+W++ G V E+ ++ LR+ + ALEV +W+
Sbjct: 33 PLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKWMNETGVCVFS 92
Query: 62 ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKM 121
+++ L+ + +G E+ F + + Y+N+ Y L+ + + ++ SL + +KM
Sbjct: 93 PTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKM 152
Query: 122 RVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181
+ +G S L +N ++ L ++ G+ + +P +L +MK + VAP ++ I + +++
Sbjct: 153 KEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDL 212
Query: 182 EGLMKVYSDM-KRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240
E + DM +R ++ + +Y + A + A ++ E + + +
Sbjct: 213 ERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKDGEGYNH 272
Query: 241 LIILYGYLAKGKDLERIWATVQELPNVR-SKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299
LI LY L K ++ R+W +++ R ++ Y+ +++ +I + AEE+ E +S
Sbjct: 273 LITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSG 332
Query: 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359
N+VI Y +KA +L++++ G ++ +A + +E F
Sbjct: 333 NCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAF 392
Query: 360 KALE--LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA-NYTKYT 416
K ++ LG++ + ++K R P L S++ ++G + E+ L+ K
Sbjct: 393 KCMKTALGVE-VGSRKWR---PGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNKQ- 447
Query: 417 FVYNTLIKAYVK-AKINDPNLLRRMILGGARPDAETYSLL 455
+Y+ L+KA ++ N LL+RM D ET +L
Sbjct: 448 -MYHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVIL 486
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q940Q2 | PPR19_ARATH | No assigned EC number | 0.6818 | 0.9956 | 0.8651 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00024324001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (550 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 464 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 4e-10
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342
YN++I YCK G +++A L EM G KPN TY
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
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This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 9e-07
Identities = 55/257 (21%), Positives = 104/257 (40%), Gaps = 22/257 (8%)
Query: 132 VFNRLIILNSSPGRRKTIPNILRQMKADK--VAPHVSTFHILMKIEANDHNIEGLMKVYS 189
VFN LI G ++L +MKA+ + P T LMK AN ++ +VY
Sbjct: 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603
Query: 190 DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249
+ ++ Y I + + + A + + ++K + L+ + G+
Sbjct: 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH-- 661
Query: 250 KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQV-------SRAEELWLEMQSVKQLK 302
DL++ + +Q+ R + L ++ + +A EL+ +++S+K
Sbjct: 662 -AGDLDKAFEILQD---ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717
Query: 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKAL 362
N++I+ C+ + KA +L EM G PN ITY L + E
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS-------ERKDDA 770
Query: 363 ELGMKLITTKKVRSSTP 379
++G+ L++ K P
Sbjct: 771 DVGLDLLSQAKEDGIKP 787
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339
YN++I CK G +++A L KEM G +P+
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 7e-06
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 307 YNSVISVYCKNGFIDKASGLLKEMSMNGC 335
YNS+IS YCK G +++A L KEM G
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 1e-05
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206
P V T++ L+ +E +K++++MK+ ++PN +Y IL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 17/149 (11%)
Query: 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
NS + C +G +++A LL+ M + Y L C VEEG +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRV------ 108
Query: 368 LITTKKVRSSTPWLETTL--SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425
+ SS P L L +++ +F G++ +A +F ++ + + F +N L+
Sbjct: 109 ---CSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERD----LFSWNVLVGG 161
Query: 426 YVKAKINDP--NLLRRMILGGARPDAETY 452
Y KA D L RM+ G RPD T+
Sbjct: 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTF 190
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 28/116 (24%), Positives = 56/116 (48%)
Query: 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153
+E+ ++ LV G + + E ++ R G + + ++ L+ S+ K +
Sbjct: 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707
Query: 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA 209
+K+ K+ P VST + L+ + + ++V S+MKR + PN ++Y IL A
Sbjct: 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 6e-05
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 307 YNSVISVYCKNGFIDKASGLLKEMS 331
YN++I C+ G +D+A LL EM
Sbjct: 10 YNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 386 SIIEIFAEKGDVGNAENLFEELKKANY--TKYTFVYNTLIKAYVK 428
++I+ + +KG V A LF E+KK YT Y+ LI K
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT--YSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 6e-04
Identities = 74/312 (23%), Positives = 127/312 (40%), Gaps = 37/312 (11%)
Query: 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA-- 209
+ +M V +V TF L+ A + Y M+ V+P+ V + L +A
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 210 --HAVARLYTV-AETYVEALEKSMTGNNWSTLDVLIILYGYL----AKGKDLER---IWA 259
AV R + V AE E +D I G L A ++R ++
Sbjct: 554 QSGAVDRAFDVLAEMKAET----------HPIDPDHITVGALMKACANAGQVDRAKEVYQ 603
Query: 260 TVQELPNVRS--KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS-VISVYCK 316
+ E N++ + Y +A+ + + A ++ +M+ K +K E + S ++ V
Sbjct: 604 MIHEY-NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAGH 661
Query: 317 NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRS 376
G +DKA +L++ G K ++Y L C SN + KALEL I + K+R
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC--SNA-KNWKKALELYED-IKSIKLR- 716
Query: 377 STPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL 436
P + T ++I E + A + E+K+ T Y+ L+ A + D L
Sbjct: 717 --PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774
Query: 437 LRRMILGGARPD 448
+L A+ D
Sbjct: 775 ---DLLSQAKED 783
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 416 TFVYNTLIKAYVKA-KIND-PNLLRRMILGGARPDAETYSLL 455
YNTLI Y K K+ + L M G +P+ TYS+L
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.76 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.74 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.72 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.71 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.69 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.69 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.69 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.67 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.65 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.63 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.62 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.58 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.57 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.55 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.55 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.53 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.52 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.49 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.47 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.47 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.47 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.46 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.44 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.44 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.43 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.42 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.41 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.35 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.34 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.32 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.31 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.3 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.26 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.26 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.22 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.21 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.17 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.15 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.14 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.13 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.12 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.11 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.11 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.1 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.06 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.04 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.99 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.97 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.93 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.93 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.93 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.9 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.88 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.87 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.85 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.84 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.84 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.82 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.81 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.78 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.73 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.72 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.72 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.7 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.7 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.67 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.67 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.64 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.63 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.62 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.61 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.6 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.59 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.56 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.56 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.53 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.52 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.5 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.49 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.47 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.46 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.45 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.45 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.44 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.44 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.43 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.42 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.36 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.35 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.34 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.34 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.28 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.28 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.26 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.26 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.25 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.23 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.2 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.18 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.16 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.13 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.12 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.1 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.08 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.06 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.02 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.99 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.99 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.97 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.93 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.93 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.92 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.84 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.82 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.77 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.75 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.74 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.72 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.71 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.7 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.69 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.67 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.66 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.65 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.58 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.57 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.56 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.55 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.54 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.53 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.53 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.52 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.47 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.41 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.41 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.4 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.4 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.37 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.36 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.35 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.32 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.28 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.25 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.23 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.2 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.14 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.14 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.11 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.11 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.08 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.08 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.08 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.06 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.93 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.93 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.91 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.9 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.9 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.88 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.85 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.81 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.81 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.8 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.77 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.76 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.72 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.72 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.57 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.55 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.5 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.49 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.47 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.44 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.43 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.43 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.41 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.34 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.28 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.17 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.16 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.13 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.04 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.01 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.95 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.94 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.84 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.84 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.76 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.74 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.58 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.56 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.41 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.28 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.24 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.18 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.14 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.13 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.09 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.97 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.92 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.85 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.8 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.73 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.65 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.63 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.55 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.31 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.3 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.27 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.27 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.2 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.18 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.17 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.17 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.06 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.95 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.93 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.92 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.92 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.79 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.7 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.66 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.42 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.41 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.38 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.36 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.34 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.3 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.25 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 93.02 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.97 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.84 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.82 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 92.73 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.73 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.71 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.46 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.43 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.42 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 92.39 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.85 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.67 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.59 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.54 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.49 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 91.48 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.38 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.05 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.98 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.94 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.79 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.64 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.6 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.21 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.08 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 90.08 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.85 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 89.55 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.52 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.3 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.26 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 89.01 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 88.33 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 88.31 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.23 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.84 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.73 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 87.44 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.21 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.2 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.97 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.9 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.82 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 86.8 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.44 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.41 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.83 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.69 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 85.68 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.7 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.34 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 84.19 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.88 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.41 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.41 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 83.21 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 83.01 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.97 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 82.09 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 82.01 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 81.76 | |
| PRK09687 | 280 | putative lyase; Provisional | 81.25 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 80.28 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-68 Score=523.28 Aligned_cols=430 Identities=16% Similarity=0.193 Sum_probs=413.0
Q ss_pred CccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHH
Q 044770 22 FPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNL 101 (464)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 101 (464)
..++...+..++..+++.|++++|+++|++|.+..-+.++..+++.++..|.+.|.+++|..+|+.|.. |+..+|+.+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~L 443 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNML 443 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHHH
Confidence 445677889999999999999999999999998544567888889999999999999999999999997 999999999
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 044770 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181 (464)
Q Consensus 102 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (464)
+.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHh--ccCCCChhhHHHHHHHHHhhcChhhHHHHHH
Q 044770 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK--SMTGNNWSTLDVLIILYGYLAKGKDLERIWA 259 (464)
Q Consensus 182 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (464)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999976 6789999999999999999999999999999
Q ss_pred Hhcc-CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc
Q 044770 260 TVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338 (464)
Q Consensus 260 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 338 (464)
.|.+ +..++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 9988 557888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHH
Q 044770 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418 (464)
Q Consensus 339 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 418 (464)
..+|+.+|.+|++.|++++|.++|++| ...++.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM-------~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDI-------KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH-------HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 999999999999999999999999999 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044770 419 YNTLIKAYVKAKIN--DPNLLRRMILGGARPDAETYSLLKLAEQ 460 (464)
Q Consensus 419 ~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~L~~~~~ 460 (464)
|+.+|.+|++.|+. |.+++.+|++.|+.||..||++|+..|.
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999984 9999999999999999999999986653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=525.64 Aligned_cols=442 Identities=14% Similarity=0.151 Sum_probs=418.2
Q ss_pred CCCCcchhhHHHHhhcC-ccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHH
Q 044770 6 RGEPVGSAFQSWMREGF-PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKL 84 (464)
Q Consensus 6 ~~~~~~~~l~~~~~~g~-~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 84 (464)
+...+.++|++|.+.|+ +++...+..++..|.+.|.+++|.++++.|.. |+..+|+.++.+|++.|+++.|.++
T Consensus 385 ~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~l 459 (1060)
T PLN03218 385 RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRV 459 (1060)
T ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34567899999999986 56667777899999999999999999998853 8999999999999999999999999
Q ss_pred hhhcCCC--CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCC
Q 044770 85 FCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVA 162 (464)
Q Consensus 85 ~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (464)
|+.|.+. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 460 f~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 9999877 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHh--CCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHH
Q 044770 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKR--SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240 (464)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (464)
||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.|+..+|+.
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns 619 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 9999999999999999999999999999976 67999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcChhhHHHHHHHhcc-CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCC
Q 044770 241 LIILYGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319 (464)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 319 (464)
++.+|++.|++++|.++|+.|.. +..++..+|+.++.+|++.|++++|.++|+.|.+.|..||..+|+.+|.+|++.|+
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~ 699 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999988 66788899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhh
Q 044770 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGN 399 (464)
Q Consensus 320 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 399 (464)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++| ...++.||..||+.++.+|++.|++++
T Consensus 700 ~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM-------~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM-------KRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-------HHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999999999999999999 778999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHH----c------------C---------CChhHHHHHHHhCCCCCCHHHHHH
Q 044770 400 AENLFEELKKANYTKYTFVYNTLIKAYVK----A------------K---------INDPNLLRRMILGGARPDAETYSL 454 (464)
Q Consensus 400 A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~------------g---------~~a~~~~~~m~~~~~~p~~~t~~~ 454 (464)
|.++|++|.+.|+.||..+|+.++..|.+ . | ..|+.+|++|++.|+.||..||+.
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~ 852 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQ 852 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 99999999999999999999999866442 1 1 127899999999999999999999
Q ss_pred HHHHH
Q 044770 455 LKLAE 459 (464)
Q Consensus 455 L~~~~ 459 (464)
++.+.
T Consensus 853 vL~cl 857 (1060)
T PLN03218 853 VLGCL 857 (1060)
T ss_pred HHHHh
Confidence 98554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-65 Score=512.57 Aligned_cols=435 Identities=14% Similarity=0.102 Sum_probs=376.5
Q ss_pred CCCCcchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHh
Q 044770 6 RGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF 85 (464)
Q Consensus 6 ~~~~~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 85 (464)
..+.+.+++++|...|+.||..+|..++++|+..++++.+.+++..+.+ .|+.|+..+++.++.+|++.|++++|.++|
T Consensus 167 ~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 245 (857)
T PLN03077 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR-FGFELDVDVVNALITMYVKCGDVVSARLVF 245 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH-cCCCcccchHhHHHHHHhcCCCHHHHHHHH
Confidence 3456788899999999999999999999999999999999999999988 789999999999999999999999999999
Q ss_pred hhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCCh
Q 044770 86 CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165 (464)
Q Consensus 86 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (464)
++|+. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..|.+.|+.||.
T Consensus 246 ~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~ 323 (857)
T PLN03077 246 DRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323 (857)
T ss_pred hcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccch
Confidence 99987 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
.+||+|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH
Confidence 999999999999999999999999997 5799999999999999999999999999999999999999999999999
Q ss_pred HhhcChhhHHHHHHHhcc-CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHH
Q 044770 246 GYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 324 (464)
++.|+.+.+.++++.+.+ +..++..++++|+++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHH
Confidence 999999999999999888 6677888999999999999999999999999986 78889999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc------------------------
Q 044770 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW------------------------ 380 (464)
Q Consensus 325 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~------------------------ 380 (464)
.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+ .+.|+.++
T Consensus 476 ~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~-------~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 476 IFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV-------LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred HHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH-------HHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 99999986 59999999999999999999999999999888 44555554
Q ss_pred ------HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC--ChhHHHHHHH-hCCCCCCHHH
Q 044770 381 ------LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMI-LGGARPDAET 451 (464)
Q Consensus 381 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~a~~~~~~m~-~~~~~p~~~t 451 (464)
..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|. +|.++|+.|. ..|+.||..|
T Consensus 548 ~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred HhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 445555555555555555555555555555555555555555555555554 2455555555 3455555555
Q ss_pred HHHHHHHH
Q 044770 452 YSLLKLAE 459 (464)
Q Consensus 452 ~~~L~~~~ 459 (464)
|++++.++
T Consensus 628 y~~lv~~l 635 (857)
T PLN03077 628 YACVVDLL 635 (857)
T ss_pred HHHHHHHH
Confidence 55554443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-64 Score=493.02 Aligned_cols=434 Identities=15% Similarity=0.164 Sum_probs=408.3
Q ss_pred CCCcchhhHHHHhh-cCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHh
Q 044770 7 GEPVGSAFQSWMRE-GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF 85 (464)
Q Consensus 7 ~~~~~~~l~~~~~~-g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 85 (464)
...+.++|+.|... +..|+..+|..++.+|.+.++++.|.+++..|.+ .|+.||..+|+.++..|++.|+++.|.++|
T Consensus 103 ~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 181 (697)
T PLN03081 103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES-SGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCcchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 34577888888876 4789999999999999999999999999999988 789999999999999999999999999999
Q ss_pred hhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCCh
Q 044770 86 CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165 (464)
Q Consensus 86 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (464)
++|+. ||..+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.||.
T Consensus 182 ~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~ 259 (697)
T PLN03081 182 DEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT 259 (697)
T ss_pred hcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccc
Confidence 99997 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
.+|++|+++|++.|++++|.++|++|. .+|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999996 5799999999999999999999999999999999999999999999999
Q ss_pred HhhcChhhHHHHHHHhcc-CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHH
Q 044770 246 GYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 324 (464)
++.|+++.|.+++..+.+ +..++..++++|+++|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|+
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~ 411 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAV 411 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHH
Confidence 999999999999999988 5678889999999999999999999999999976 79999999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 044770 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404 (464)
Q Consensus 325 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (464)
++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. ...++.|+..+|+.++++|++.|++++|.+++
T Consensus 412 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~------~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS------ENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH------HhcCCCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999994 34799999999999999999999999999998
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCC-HHHHHHHHHHHHhh
Q 044770 405 EELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLLRRMILGGARPD-AETYSLLKLAEQFQ 462 (464)
Q Consensus 405 ~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~-~~t~~~L~~~~~~~ 462 (464)
++| ++.|+..+|++|+.+|..+|+. |..++++|.+ +.|+ ..+|..|+..+...
T Consensus 486 ~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 486 RRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred HHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhC
Confidence 765 5779999999999999999985 7888888864 5664 57888888766543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-63 Score=495.40 Aligned_cols=432 Identities=14% Similarity=0.124 Sum_probs=412.4
Q ss_pred CCCCcchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHh
Q 044770 6 RGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLF 85 (464)
Q Consensus 6 ~~~~~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 85 (464)
....+..+++.|.+.|++|+..++..++..|.+.+.++.|.+++..+.+ .+..++...++.++..|++.|+++.|.++|
T Consensus 66 ~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~n~li~~~~~~g~~~~A~~~f 144 (857)
T PLN03077 66 QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS-SHPSLGVRLGNAMLSMFVRFGELVHAWYVF 144 (857)
T ss_pred CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHhCCChHHHHHHH
Confidence 3456778899999999999999999999999999999999999999988 567899999999999999999999999999
Q ss_pred hhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCCh
Q 044770 86 CCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165 (464)
Q Consensus 86 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (464)
++|+. ||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|...++++.+.+++..|.+.|+.||.
T Consensus 145 ~~m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (857)
T PLN03077 145 GKMPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222 (857)
T ss_pred hcCCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCccc
Confidence 99997 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
.+||+|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|
T Consensus 223 ~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 223 DVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred chHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 999999999999999999999999997 5799999999999999999999999999999999999999999999999
Q ss_pred HhhcChhhHHHHHHHhcc-CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHH
Q 044770 246 GYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 324 (464)
++.|+.+.+.+++..+.+ +..++..+|++++.+|++.|++++|.++|++|.. ||..+||.+|.+|++.|++++|+
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHH
Confidence 999999999999999887 6778899999999999999999999999999976 79999999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 044770 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404 (464)
Q Consensus 325 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (464)
++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+ .+.|..|+..+|++|+++|+++|++++|.++|
T Consensus 375 ~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~-------~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA-------ERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred HHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH-------HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999 77899999999999999999999999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044770 405 EELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLLRRMILGGARPDAETYSLLKLAEQ 460 (464)
Q Consensus 405 ~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~L~~~~~ 460 (464)
++|.+ ||..+||.+|.+|++.|+. |+.+|++|.. ++.||..||.+++.+|.
T Consensus 448 ~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 448 HNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred HhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 99976 7889999999999999974 9999999986 69999999999888775
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-60 Score=465.00 Aligned_cols=416 Identities=13% Similarity=0.114 Sum_probs=395.7
Q ss_pred CCcchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhh
Q 044770 8 EPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87 (464)
Q Consensus 8 ~~~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 87 (464)
..+.+++..|.+.|+.|+..+++.++..|++.|+++.|.++|+.|. .||..+|+.++.+|++.|++++|.++|++
T Consensus 140 ~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~ 214 (697)
T PLN03081 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFRE 214 (697)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3467888899999999999999999999999999999999999984 47999999999999999999999999999
Q ss_pred cCCC--CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCCh
Q 044770 88 IPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165 (464)
Q Consensus 88 ~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (464)
|... .|+..+|+.++.+|+..|..+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|++|. .+|.
T Consensus 215 M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~ 290 (697)
T PLN03081 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTT 290 (697)
T ss_pred HHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCCh
Confidence 9776 688999999999999999999999999999999999999999999999999999999999999996 5799
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
.+||+++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHH
Q 044770 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 325 (464)
++.|++++|.++|+.|.+ ++..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.+
T Consensus 371 ~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 371 SKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred HHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence 999999999999999865 56778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-CCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 044770 326 LLKEMSM-NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404 (464)
Q Consensus 326 ~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (464)
+|+.|.+ .|+.|+..+|+.++.+|++.|++++|.++++.+ +..|+..+|++|+.+|...|+++.|..++
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----------~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----------PFKPTVNMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 9999986 699999999999999999999999999998876 68899999999999999999999999999
Q ss_pred HHHHHcCCCCc-HHHHHHHHHHHHHcCCC--hhHHHHHHHhCCCCC
Q 044770 405 EELKKANYTKY-TFVYNTLIKAYVKAKIN--DPNLLRRMILGGARP 447 (464)
Q Consensus 405 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p 447 (464)
+++.+. .|+ ..+|+.|+..|++.|+. |.++++.|++.|+.+
T Consensus 518 ~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 518 EKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 999754 464 56999999999999984 999999999999863
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-26 Score=237.31 Aligned_cols=415 Identities=14% Similarity=0.026 Sum_probs=227.8
Q ss_pred cChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHH
Q 044770 24 VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLV 102 (464)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li 102 (464)
.++..+..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.|+++... +.+..++..+.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 540 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALA 540 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 344444555555555555555555555554421 223334444555555555555555555555443 22344555555
Q ss_pred HHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChh
Q 044770 103 IACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182 (464)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (464)
..+.+.|++++|...++++.+.+ +.+...+..+...+...|++++|..+++.+.+.. +.+...|..+..++...|+++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 55555555555555555555432 2334445555555555555555555555555432 344555555556666666666
Q ss_pred HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhc
Q 044770 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262 (464)
Q Consensus 183 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (464)
+|...|+++.+.. +.+...+..+..++.+.|++++|..+++++.+. .+.+..++..+...+...|++++|.++++.+.
T Consensus 619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666555432 223444555555555566666666666655543 22334555555556666666666666666655
Q ss_pred cCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHH
Q 044770 263 ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342 (464)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 342 (464)
...+.+...+..+...+...|++++|.+.|+.+.... |+..++..+..++.+.|++++|.+.++++.+.. +.+...+
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~ 773 (899)
T TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLR 773 (899)
T ss_pred hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 5444455555556666666666666666666665533 333455556666666666666666666665542 2345555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHH
Q 044770 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422 (464)
Q Consensus 343 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 422 (464)
..+...|...|++++|...|+.+++ ..+++...++.+...+.+.|+ .+|...++++.+.. +-+..++..+
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~ 843 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVK--------KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTL 843 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 5666666666666666666666632 122345556666666666666 55666666666542 1233355666
Q ss_pred HHHHHHcCCC--hhHHHHHHHhCCCCCCHHHHHHHHHH
Q 044770 423 IKAYVKAKIN--DPNLLRRMILGGARPDAETYSLLKLA 458 (464)
Q Consensus 423 i~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~L~~~ 458 (464)
...+...|+. |..+++++.+.+.. |..++..+..+
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 880 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALA 880 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHH
Confidence 6666666653 77777777775532 55555544333
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-26 Score=234.75 Aligned_cols=390 Identities=12% Similarity=0.054 Sum_probs=188.3
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHH
Q 044770 35 RLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKL 113 (464)
Q Consensus 35 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~ 113 (464)
.+.+.|++++|+++++.+... .+++..++..+...+...|++++|.+.|+++... +.+...+..+...+...|++++
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHH
Confidence 333344444444444443331 1223334444444444444444444444444333 1223344444444444444444
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 044770 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 114 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 193 (464)
|.+.|+++.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..+...+.+.|++++|..+++.+.+
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444444432 2234444444444444555555555555444432 33334444445555555555555555555543
Q ss_pred CCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHH
Q 044770 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273 (464)
Q Consensus 194 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (464)
.. +.+..+|..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|...++.+....+.+...+.
T Consensus 596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 673 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 32 2234445555555555555555555555554431 223344445555555555555555555555544444444555
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 353 (464)
.++..+...|++++|.++++.+.+.. +.+...+..+...+...|++++|...|+.+... .|+..++..+...+.+.|
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCC
Confidence 55555555555555555555555432 234444555555555555555555555555553 233344445555555555
Q ss_pred ChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC-
Q 044770 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN- 432 (464)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~- 432 (464)
++++|.+.++.+++ ..+.+...+..+...|.+.|++++|...|+++.+.. +++..+++.+...+...|+.
T Consensus 751 ~~~~A~~~~~~~l~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~ 821 (899)
T TIGR02917 751 NTAEAVKTLEAWLK--------THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKDPR 821 (899)
T ss_pred CHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHH
Confidence 55555555555531 122244555555556666666666666666665543 23444555555555555553
Q ss_pred hhHHHHHHHh
Q 044770 433 DPNLLRRMIL 442 (464)
Q Consensus 433 a~~~~~~m~~ 442 (464)
|+.++++...
T Consensus 822 A~~~~~~~~~ 831 (899)
T TIGR02917 822 ALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHh
Confidence 5555555554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-22 Score=186.53 Aligned_cols=299 Identities=11% Similarity=-0.014 Sum_probs=141.8
Q ss_pred HHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCC---hhhHHHHHHHHHccCCh
Q 044770 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH---VSTFHILMKIEANDHNI 181 (464)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 181 (464)
+...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344455555555555555542 22334555555555555555555555555554321111 13455556666666666
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCCh----hhHHHHHHHHHhhcChhhHHHH
Q 044770 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW----STLDVLIILYGYLAKGKDLERI 257 (464)
Q Consensus 182 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 257 (464)
++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|+.++|.+.
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666666665432 234555666666666666666666666666554322211 1112222333333333333333
Q ss_pred HHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 044770 258 WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337 (464)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 337 (464)
++.+.+..+.....+..+...+.+.|++++|.++|+++.+.+......+++.++.+|...|++++|...++++.+. .|
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 3333332222222344444455555555555555555544221111233444555555555555555555555442 23
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHh---cCChhhHHHHHHHHHHcCCCC
Q 044770 338 NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE---KGDVGNAENLFEELKKANYTK 414 (464)
Q Consensus 338 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p 414 (464)
+...+..+...+.+.|++++|..+++.++ ...|+..+++.++..+.. .|+..++..++++|.+.++.|
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l---------~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQL---------RRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHH---------HhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 33344444445555555555555555442 123444444444444443 234555555555555444444
Q ss_pred cH
Q 044770 415 YT 416 (464)
Q Consensus 415 ~~ 416 (464)
++
T Consensus 352 ~p 353 (389)
T PRK11788 352 KP 353 (389)
T ss_pred CC
Confidence 43
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-22 Score=185.34 Aligned_cols=300 Identities=11% Similarity=0.032 Sum_probs=248.7
Q ss_pred HHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc---HhHHHHHHHHHHhc
Q 044770 137 IILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN---EVSYCILATAHAVA 213 (464)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~ 213 (464)
...+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 345677899999999999999875 45667899999999999999999999999987542222 25678889999999
Q ss_pred ChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCc-----hhhHHHHHHHhhccCChHHH
Q 044770 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR-----SKSYVLAIEAFGRIAQVSRA 288 (464)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a 288 (464)
|++++|..+|+++.+. .+.+..++..++..+...|++++|.+.++.+....+.+ ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999876 34567889999999999999999999999987743332 12355677888899999999
Q ss_pred HHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..+..+|...|++++|...++.+.+
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~- 277 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE- 277 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 99999998743 3356678888999999999999999999999854333346788899999999999999999999842
Q ss_pred HhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHH---cCC--ChhHHHHHHHhC
Q 044770 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK---AKI--NDPNLLRRMILG 443 (464)
Q Consensus 369 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~--~a~~~~~~m~~~ 443 (464)
..|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+ .++.++++|.+.
T Consensus 278 --------~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 278 --------EYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred --------hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 3566666789999999999999999999998876 4899999999988885 334 489999999998
Q ss_pred CCCCCHH
Q 044770 444 GARPDAE 450 (464)
Q Consensus 444 ~~~p~~~ 450 (464)
++.||+.
T Consensus 348 ~~~~~p~ 354 (389)
T PRK11788 348 QLKRKPR 354 (389)
T ss_pred HHhCCCC
Confidence 8887765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-19 Score=170.79 Aligned_cols=399 Identities=10% Similarity=-0.016 Sum_probs=290.2
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHh
Q 044770 29 IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLD 107 (464)
Q Consensus 29 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~ 107 (464)
+......+.+.|+++.|+..|+..++ ..|+...|..+..+|.+.|++++|+..++...+..| +...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 44566778889999999999999987 457788899999999999999999999999887744 57789999999999
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhC----------------------------
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD---------------------------- 159 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------- 159 (464)
.|++++|+..|......+-..+.. ...++..+.. ..+........+.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 999999998887665432111111 1111110000 0000000000000
Q ss_pred ---CCCCCh-hhHHHHHHH---HHccCChhHHHHHHHHHHhCC-CCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhcc
Q 044770 160 ---KVAPHV-STFHILMKI---EANDHNIEGLMKVYSDMKRSE-VEP-NEVSYCILATAHAVARLYTVAETYVEALEKSM 230 (464)
Q Consensus 160 ---~~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 230 (464)
...+.. ..+..+... ....+++++|.+.|+...+.+ ..| ....|..+...+...|++++|+..+++.....
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 001110 011111111 123468999999999998764 234 34567888888889999999999999998752
Q ss_pred CCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHH
Q 044770 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310 (464)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 310 (464)
+.....|..+...+...|++++|...++......+.+...+..+...+...|++++|...|++..+.. +.+...+..+
T Consensus 362 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~l 439 (615)
T TIGR00990 362 -PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQL 439 (615)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHH
Confidence 23456788888999999999999999999988777778889999999999999999999999999843 3467778888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcH-HHHHHHH
Q 044770 311 ISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL-ETTLSII 388 (464)
Q Consensus 311 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~-~~~~~li 388 (464)
...+.+.|++++|+..|++..+. .| +...++.+...+...|++++|+..|+.++++... .....++. ..++...
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~--~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE--TKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc--cccccccHHHHHHHHH
Confidence 99999999999999999999874 34 5678888889999999999999999999643211 00111111 1122233
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCc-HHHHHHHHHHHHHcCCC--hhHHHHHHHhC
Q 044770 389 EIFAEKGDVGNAENLFEELKKANYTKY-TFVYNTLIKAYVKAKIN--DPNLLRRMILG 443 (464)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~--a~~~~~~m~~~ 443 (464)
..+...|++++|.+++++..+.. |+ ...+..+...+.+.|+. |+.+|++..+.
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33445799999999999988764 44 44799999999999984 88999888764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-19 Score=172.46 Aligned_cols=371 Identities=9% Similarity=-0.059 Sum_probs=286.7
Q ss_pred hhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHH
Q 044770 26 RGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIA 104 (464)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~ 104 (464)
...+..++..+.+.|+++.|+.+++......+ -+...+..++......|++++|...|+++....| +...+..+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34466678888999999999999999988543 3344566666777789999999999999988744 56788899999
Q ss_pred HHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHH
Q 044770 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184 (464)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (464)
+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHH
Confidence 999999999999999999863 4457788889999999999999999999887654 2333344333 347889999999
Q ss_pred HHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhh----HHHHHHH
Q 044770 185 MKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD----LERIWAT 260 (464)
Q Consensus 185 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~ 260 (464)
...++.+.+....++...+..+..++.+.|++++|...++++.... +.+...+..+...+...|+.++ |...++.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999998776433445555666778889999999999999998763 4467788889999999999886 7899999
Q ss_pred hccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHH
Q 044770 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340 (464)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 340 (464)
.....+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|+..|+++.+. .|+..
T Consensus 276 Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~ 352 (656)
T PRK15174 276 ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTS 352 (656)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccch
Confidence 888777788889999999999999999999999998843 335667888899999999999999999999884 45543
Q ss_pred H-HHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 341 T-YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 341 ~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
. +..+..++...|+.++|...|+.+++..... .-.+-......+-.++...+..++....+.++.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~---~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARASH---LPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh---chhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 3 3445667889999999999999996542211 011111233344455555555555445555554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-19 Score=159.79 Aligned_cols=401 Identities=16% Similarity=0.102 Sum_probs=304.3
Q ss_pred hchHHHHHHHHhhcchHHHHHHHHHHHHcCCCC--------------------------------CCchhHHHHHHHHHh
Q 044770 27 GEIFHSINRLRKLQLNKRALEVMEWVIRERPYR--------------------------------PKELDYSYLLEFTIK 74 (464)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~ 74 (464)
.....+.....+.|++++|++....+-++.+.. --..+|+.+.+.+-.
T Consensus 49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 49 DDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 346677888889999999998877665432111 112346667777777
Q ss_pred hcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhh-HHHHHHHhcCCCCcccHHHH
Q 044770 75 NHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLV-FNRLIILNSSPGRRKTIPNI 152 (464)
Q Consensus 75 ~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~ 152 (464)
.|++++|+.+++.+.+..| ....|..+..++...|+.+.|.+.|.+.++. .|+... .+.+...+-..|+..+|...
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 7888888888877776644 5677778888888888888888887777764 354332 33344445557777777777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHHHHHHHHHhccC
Q 044770 153 LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEALEKSMT 231 (464)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 231 (464)
+.+.++.. +-=...|+.|.-.+...|+...|+..|++..+. .|+ ...|-.|...|...+.+++|...|.+.... .
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-r 282 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-R 282 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-C
Confidence 77776542 233456777887888888888888888888765 444 467888888888888888888888887664 2
Q ss_pred CCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHH
Q 044770 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311 (464)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 311 (464)
+....++..+...|...|..+.|+..+++..+..+.-...|+.|..++-..|++.+|.+.+.+..... +-.....+.|.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLg 361 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLG 361 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 33456677777788889999999999999888777777789999999999999999999999888743 22456788899
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc-HHHHHHHHH
Q 044770 312 SVYCKNGFIDKASGLLKEMSMNGCKPN-AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LETTLSIIE 389 (464)
Q Consensus 312 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~ 389 (464)
..|...|.+++|..+|....+ +.|. ....+.|...|-.+|++++|+..++++ ..+.|+ ...|+.+..
T Consensus 362 ni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea---------lrI~P~fAda~~NmGn 430 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEA---------LRIKPTFADALSNMGN 430 (966)
T ss_pred HHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHH---------HhcCchHHHHHHhcch
Confidence 999999999999999998887 5565 456788888899999999999999988 467776 467889999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCcHH-HHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCH
Q 044770 390 IFAEKGDVGNAENLFEELKKANYTKYTF-VYNTLIKAYVKAKIN--DPNLLRRMILGGARPDA 449 (464)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~ 449 (464)
.|-..|+.+.|.+.+.+....+ |.-. ..+.|...|-.+|+. |++-++...+ ++||.
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 9999999999999998888743 6544 788888999999984 7888888776 55664
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=166.20 Aligned_cols=382 Identities=13% Similarity=0.056 Sum_probs=321.0
Q ss_pred CccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhH-HHH
Q 044770 22 FPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL-YNN 100 (464)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~ 100 (464)
.+.-..+|..+...+...|+++.|+.+++.+++.. +.....|..+..++...|+.+.|.+.|.+..+..|+... .+.
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~ 189 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSD 189 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcc
Confidence 34456678889999999999999999999999843 235678999999999999999999999998887665443 344
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 044770 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (464)
+....-..|+..+|...|.+.++.. +--...|+.|...+...|+...|+..|++..+.. +.-...|-.|...|...+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhc
Confidence 5555667899999999999888753 2235679999999999999999999999998753 3335688889999999999
Q ss_pred hhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhhcChhhHHHHH
Q 044770 181 IEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEALEKSMTGNN-WSTLDVLIILYGYLAKGKDLERIW 258 (464)
Q Consensus 181 ~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 258 (464)
+++|...|...... .|+ ...+..+...|...|..+.|+..|++..+. .|+ +..|+.+..++-..|+..+|.+.+
T Consensus 268 ~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 268 FDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred chHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHH
Confidence 99999999988765 555 566777888899999999999999999874 343 678999999999999999999999
Q ss_pred HHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 044770 259 ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337 (464)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 337 (464)
.....-.+....+.+.|...|...|.++.|..+|....+- .|. ...++.|...|-++|++++|+..|++.++ +.|
T Consensus 344 nkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P 419 (966)
T KOG4626|consen 344 NKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKP 419 (966)
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCc
Confidence 9999877777788999999999999999999999998873 233 45789999999999999999999999998 788
Q ss_pred cH-HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc
Q 044770 338 NA-ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415 (464)
Q Consensus 338 ~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 415 (464)
+. ..|+.+...|-..|+.+.|.+.+.++ ..+.|. ...++.|...|-..|++.+|.+-+++..+. +||
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rA---------I~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPD 488 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRA---------IQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPD 488 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHH---------HhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCC
Confidence 74 68899999999999999999999998 456774 456789999999999999999999999874 577
Q ss_pred HH-HHHHHHHHH
Q 044770 416 TF-VYNTLIKAY 426 (464)
Q Consensus 416 ~~-~~~~li~~~ 426 (464)
.. .|..++.+.
T Consensus 489 fpdA~cNllh~l 500 (966)
T KOG4626|consen 489 FPDAYCNLLHCL 500 (966)
T ss_pred CchhhhHHHHHH
Confidence 66 555555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-19 Score=172.99 Aligned_cols=377 Identities=9% Similarity=-0.030 Sum_probs=290.3
Q ss_pred HHhhcchHHHHHHHHHHHHcCCCC-CCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHH
Q 044770 36 LRKLQLNKRALEVMEWVIRERPYR-PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKL 113 (464)
Q Consensus 36 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~ 113 (464)
+.++.+|+.-.-+|....++..-. -+......++..+.+.|++++|..+++......| +...+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 456677776666665543321111 1223345566778899999999999999877744 55677777788888999999
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 044770 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 114 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 193 (464)
|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999864 4456788888899999999999999999998863 55677888899999999999999999998876
Q ss_pred CCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHH
Q 044770 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273 (464)
Q Consensus 194 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (464)
.... +...+..+ ..+...|++++|...++.+......++......+..++...|+.++|...++......+.+...+.
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~ 250 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR 250 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 5322 23333333 347889999999999999877644444555566678889999999999999999887777788899
Q ss_pred HHHHHhhccCChHH----HHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-HHHHHHHHHH
Q 044770 274 LAIEAFGRIAQVSR----AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN-AITYRHLALG 348 (464)
Q Consensus 274 ~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~ 348 (464)
.+...|...|++++ |...|++..+.. +.+...+..+...+...|++++|...+++..+. .|+ ...+..+..+
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~ 327 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999999986 899999998843 346778999999999999999999999999985 444 5567777888
Q ss_pred HHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcH-HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 044770 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWL-ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427 (464)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 427 (464)
+...|++++|...++.+.+ ..|+. ..+..+..++...|+.++|...|++..+....--...|...+..|.
T Consensus 328 l~~~G~~~eA~~~l~~al~---------~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~ 398 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAR---------EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALD 398 (656)
T ss_pred HHHCCCHHHHHHHHHHHHH---------hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHH
Confidence 9999999999999999842 24443 3344467788999999999999999887532111224444444443
Q ss_pred H
Q 044770 428 K 428 (464)
Q Consensus 428 ~ 428 (464)
+
T Consensus 399 ~ 399 (656)
T PRK15174 399 G 399 (656)
T ss_pred H
Confidence 3
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-19 Score=182.34 Aligned_cols=393 Identities=10% Similarity=-0.026 Sum_probs=253.9
Q ss_pred HHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCch---hHHH----------
Q 044770 33 INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE---LLYN---------- 99 (464)
Q Consensus 33 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~---------- 99 (464)
...+...|++++|+..|+...+.. +.+...+..+...+.+.|++++|...|++..+..|+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 445667899999999999998843 3366788888899999999999999999877653422 1222
Q ss_pred --HHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHH--
Q 044770 100 --NLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE-- 175 (464)
Q Consensus 100 --~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 175 (464)
.....+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 22345778899999999999999864 3456677788889999999999999999998753 33344444444444
Q ss_pred ----------------------------------------HccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCh
Q 044770 176 ----------------------------------------ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215 (464)
Q Consensus 176 ----------------------------------------~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 215 (464)
...|++++|.+.|++..+... -+...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 234444555555544444311 123333444444555555
Q ss_pred hhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCch----------hhHHHHHHHhhccCCh
Q 044770 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS----------KSYVLAIEAFGRIAQV 285 (464)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~ 285 (464)
+++|...++++.+.. +.+...+..+...+...++.++|...++.+........ ..+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 555555555544321 11222222223333444445555554444332111000 0112234455566667
Q ss_pred HHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 286 SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 286 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
++|..+++. .+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777666651 23455667778888999999999999999998853 225678888888999999999999999987
Q ss_pred HHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CC---cHHHHHHHHHHHHHcCCC--hhHHH
Q 044770 366 MKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKANY--TK---YTFVYNTLIKAYVKAKIN--DPNLL 437 (464)
Q Consensus 366 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~li~~~~~~g~~--a~~~~ 437 (464)
. ...| +...+..+..++...|++++|.++++++....- +| +...+..+...+...|+. |+..|
T Consensus 664 l---------~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 664 P---------ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred h---------ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3 2333 345566788888899999999999999886432 12 223566667777888874 88888
Q ss_pred HHHH-hCCCC
Q 044770 438 RRMI-LGGAR 446 (464)
Q Consensus 438 ~~m~-~~~~~ 446 (464)
++.. ..|+.
T Consensus 735 ~~Al~~~~~~ 744 (1157)
T PRK11447 735 KDAMVASGIT 744 (1157)
T ss_pred HHHHhhcCCC
Confidence 7664 34554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-18 Score=176.28 Aligned_cols=399 Identities=11% Similarity=0.015 Sum_probs=293.3
Q ss_pred CcchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhH------------HHHHHHHHhhc
Q 044770 9 PVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDY------------SYLLEFTIKNH 76 (464)
Q Consensus 9 ~~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~g 76 (464)
.+...++...+. .|-+...+..+...+.+.|++++|+..|+...+..+-.+....+ ......+.+.|
T Consensus 287 ~A~~~l~~aL~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g 365 (1157)
T PRK11447 287 KAIPELQQAVRA-NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKAN 365 (1157)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCC
Confidence 344555555543 34467788889999999999999999999998744322222222 12244677899
Q ss_pred ChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHH-------------------
Q 044770 77 GISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRL------------------- 136 (464)
Q Consensus 77 ~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------------- 136 (464)
++++|...|+++....| +...+..+...+...|++++|++.|++..+.. +.+...+..+
T Consensus 366 ~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 366 NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 99999999999887744 56778889999999999999999999998753 2223333222
Q ss_pred -----------------------HHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 044770 137 -----------------------IILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 137 -----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 193 (464)
...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|...++++.+
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233446789999999999998764 44566778899999999999999999999987
Q ss_pred CCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCCh---------hhHHHHHHHHHhhcChhhHHHHHHHhccC
Q 044770 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW---------STLDVLIILYGYLAKGKDLERIWATVQEL 264 (464)
Q Consensus 194 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (464)
.. +.+...+..+...+...++.++|...++.+......++. ..+......+...|+.++|.++++.
T Consensus 524 ~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---- 598 (1157)
T PRK11447 524 QK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---- 598 (1157)
T ss_pred cC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh----
Confidence 53 224444444555567889999999999876443222221 1223456678889999999999882
Q ss_pred CCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHH
Q 044770 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYR 343 (464)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~ 343 (464)
.+.+...+..+...+.+.|++++|...|+...+. .+.+...+..++..|...|++++|++.++...+. .| +.....
T Consensus 599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~ 675 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQR 675 (1157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHH
Confidence 3344556778999999999999999999999984 3447889999999999999999999999988764 44 445566
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC---cHHHHHHHHHHHHhcCChhhHHHHHHHHHH-cCCCCc----
Q 044770 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP---WLETTLSIIEIFAEKGDVGNAENLFEELKK-ANYTKY---- 415 (464)
Q Consensus 344 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~---- 415 (464)
.+..++...|++++|.++++.++.. .....| +...+..+...+...|++++|...|+.... .|+.|.
T Consensus 676 ~la~~~~~~g~~~eA~~~~~~al~~-----~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~~ 750 (1157)
T PRK11447 676 RVALAWAALGDTAAAQRTFNRLIPQ-----AKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQD 750 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhh-----CccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 7778888999999999999998531 111222 334566678889999999999999998863 344433
Q ss_pred HHHHHHHH
Q 044770 416 TFVYNTLI 423 (464)
Q Consensus 416 ~~~~~~li 423 (464)
..+++.+.
T Consensus 751 ~~~~~~l~ 758 (1157)
T PRK11447 751 NDTFTRLT 758 (1157)
T ss_pred chHHHHHh
Confidence 23455444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-17 Score=163.73 Aligned_cols=420 Identities=11% Similarity=-0.021 Sum_probs=312.9
Q ss_pred hhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhH
Q 044770 19 REGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELL 97 (464)
Q Consensus 19 ~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~ 97 (464)
....+.++..+.-.+......|+.++|++++....... +.+...+..+...+...|++++|.++|++.... +.+...
T Consensus 8 ~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a 85 (765)
T PRK10049 8 ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDY 85 (765)
T ss_pred hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 34567788889999999999999999999999987522 344556899999999999999999999997776 345777
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 044770 98 YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177 (464)
Q Consensus 98 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (464)
+..++..+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+..++..
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 8889999999999999999999999863 44555 8888889999999999999999999864 4456666778888889
Q ss_pred cCChhHHHHHHHHHHhCCCCCcH------hHHHHHHHHHH-----hcChh---hHHHHHHHHHHhc-cCCCChh-hHH--
Q 044770 178 DHNIEGLMKVYSDMKRSEVEPNE------VSYCILATAHA-----VARLY---TVAETYVEALEKS-MTGNNWS-TLD-- 239 (464)
Q Consensus 178 ~~~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~-- 239 (464)
.+..+.|+..++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+.
T Consensus 163 ~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 163 NRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred CCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 9999999999987664 3331 01112222221 22234 6788888888754 2222221 111
Q ss_pred --HHHHHHHhhcChhhHHHHHHHhccCCCC-chhhHHHHHHHhhccCChHHHHHHHHHHHhccccC---ChhhHHHHHHH
Q 044770 240 --VLIILYGYLAKGKDLERIWATVQELPNV-RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK---ATEQYNSVISV 313 (464)
Q Consensus 240 --~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~ 313 (464)
..+.++...|+.++|+..|+.+....+. .......+...|...|++++|...|+.+.+..... ....+..+..+
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 1133456779999999999998885432 22223336778999999999999999987643211 12456667778
Q ss_pred HHhcCChhHHHHHHHHHHhCCC-----------CccH---HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC
Q 044770 314 YCKNGFIDKASGLLKEMSMNGC-----------KPNA---ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP 379 (464)
Q Consensus 314 ~~~~~~~~~a~~~~~~m~~~g~-----------~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p 379 (464)
+...|++++|..+++.+.+... .|+. ..+..+...+...|++++|+..+++++. ..+.
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--------~~P~ 391 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--------NAPG 391 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCC
Confidence 8999999999999999987521 1332 2445667778899999999999999842 1233
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcH-HHHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCHHHHHHHH
Q 044770 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT-FVYNTLIKAYVKAKIN--DPNLLRRMILGGARPDAETYSLLK 456 (464)
Q Consensus 380 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~L~ 456 (464)
+...+..+...+...|++++|++.+++..+.. |+. ..+-.....+.+.|+. |..+++++++. .|+......|-
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~ 467 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLA 467 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 56678899999999999999999999999854 654 4666666777778874 89999999984 57777665554
Q ss_pred HH
Q 044770 457 LA 458 (464)
Q Consensus 457 ~~ 458 (464)
+.
T Consensus 468 ~~ 469 (765)
T PRK10049 468 RA 469 (765)
T ss_pred HH
Confidence 44
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-17 Score=140.51 Aligned_cols=346 Identities=11% Similarity=0.076 Sum_probs=257.0
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (464)
+..+|..+|.+.|+-...+.|.+++.+......+.+..+||.+|.+-.-. .-.+++.+|....+.||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 67899999999999999999999999999887899999999999874432 23789999999999999999999999
Q ss_pred HHHccCChhH----HHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhH-HHHHHHHHHhc----cCCC----ChhhHHH
Q 044770 174 IEANDHNIEG----LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV-AETYVEALEKS----MTGN----NWSTLDV 240 (464)
Q Consensus 174 ~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~----~~~~----~~~~~~~ 240 (464)
+..+.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+ +..++.++... .++| |...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999998876 56788899999999999999999999999888854 45555555432 2332 4556777
Q ss_pred HHHHHHhhcChhhHHHHHHHhccCCC-----Cc---hhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHH
Q 044770 241 LIILYGYLAKGKDLERIWATVQELPN-----VR---SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312 (464)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 312 (464)
.+..|....+.+.|.++...+..+.. ++ ..-|..+....|.....+.-...|+.|.-.-..|+..+...++.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 88899999999999999888876322 11 12355677888888899999999999998888899999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC-Ch--------HH-----HHHHHHHhHHHHhhhhhcCCC
Q 044770 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN-LV--------EE-----GFKALELGMKLITTKKVRSST 378 (464)
Q Consensus 313 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~--------~~-----a~~~~~~~~~~~~~~~~~~~~ 378 (464)
+....|+++-.-+++.+++..|..-+...-.-++..+++.. .. .. |..+++....... ......
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~--R~r~~~ 519 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPI--RQRAQD 519 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH--HHHhcc
Confidence 99999999999999999998876555555545555555443 11 11 1111111100011 112333
Q ss_pred CcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCcHHHHHHHH---HHHHHcCCC--hhHHHHHHHhCCC
Q 044770 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKA-NYTKYTFVYNTLI---KAYVKAKIN--DPNLLRRMILGGA 445 (464)
Q Consensus 379 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li---~~~~~~g~~--a~~~~~~m~~~~~ 445 (464)
......+...-.+.+.|+.++|.++|..+.+. +-.|-....|+|+ .+-.+.+.. |..+++-|...+.
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 34445667888889999999999999998543 3334455666444 444444443 7888888866553
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-17 Score=157.30 Aligned_cols=385 Identities=9% Similarity=-0.101 Sum_probs=274.0
Q ss_pred cchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcC
Q 044770 10 VGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIP 89 (464)
Q Consensus 10 ~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 89 (464)
+...++... ...|++..+..+..++...|++++|++.++..++.. +.+...+..+..++...|++++|...|..+.
T Consensus 146 Ai~~y~~al--~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~ 221 (615)
T TIGR00990 146 AIKLYSKAI--ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASC 221 (615)
T ss_pred HHHHHHHHH--hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444433 345677788888899999999999999999998832 3355688889999999999999998876554
Q ss_pred CCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHc---------------------------CCCCc-hhhHHHHHHH-
Q 044770 90 KDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVL---------------------------GHSIS-YLVFNRLIIL- 139 (464)
Q Consensus 90 ~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------------~~~~~-~~~~~~l~~~- 139 (464)
...+ +......++..+........+...++.-... ...+. ...+..+...
T Consensus 222 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (615)
T TIGR00990 222 IIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKS 301 (615)
T ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHH
Confidence 3211 1111111111111111111111111100000 00000 0001111100
Q ss_pred --hcCCCCcccHHHHHHHHHhCC-C-CCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcC
Q 044770 140 --NSSPGRRKTIPNILRQMKADK-V-APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVAR 214 (464)
Q Consensus 140 --~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~ 214 (464)
....+++++|.+.|+...+.+ . +.....|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|
T Consensus 302 ~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g 379 (615)
T TIGR00990 302 PESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELG 379 (615)
T ss_pred HHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCC
Confidence 122357889999999998764 2 334567888888899999999999999999876 444 567888888899999
Q ss_pred hhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHH
Q 044770 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294 (464)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 294 (464)
++++|...|++..+. .+.+..++..+...+...|++++|...++......+.+...+..+...+.+.|++++|...|+.
T Consensus 380 ~~~eA~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~ 458 (615)
T TIGR00990 380 DPDKAEEDFDKALKL-NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR 458 (615)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999876 3456788899999999999999999999999987777778888999999999999999999999
Q ss_pred HHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHH------HHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 295 MQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI------TYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 295 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
..+. .+.+...|+.+...+...|++++|+..|++..+.....+.. .++..+..+...|++++|.++++++++
T Consensus 459 al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~- 536 (615)
T TIGR00990 459 CKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI- 536 (615)
T ss_pred HHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 9873 34467889999999999999999999999988743211111 122222233446999999999999842
Q ss_pred HhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 044770 369 ITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 369 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 411 (464)
..| +...+..+...+...|++++|...|++..+..
T Consensus 537 --------l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 537 --------IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred --------cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 234 34568889999999999999999999987653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-17 Score=161.24 Aligned_cols=384 Identities=8% Similarity=-0.046 Sum_probs=283.7
Q ss_pred ccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHH
Q 044770 23 PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNL 101 (464)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l 101 (464)
+.+...+..+...+...|++++|.++++...+.. +.+...+..+...+...|++++|...++++....| +.. +..+
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~l 122 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLAL 122 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHH
Confidence 4445568888899999999999999999998843 34456677888899999999999999999987745 556 8889
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCCh------hhHHHHHHHH
Q 044770 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV------STFHILMKIE 175 (464)
Q Consensus 102 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~ 175 (464)
..++...|++++|+..++++.+.. +.+...+..+..++...+..+.|.+.++.... .|+. .....++...
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999864 33556666778888888999999998887664 3331 1122223322
Q ss_pred H-----ccCCh---hHHHHHHHHHHhC-CCCCcHh-HHH----HHHHHHHhcChhhHHHHHHHHHHhccCC-CChhhHHH
Q 044770 176 A-----NDHNI---EGLMKVYSDMKRS-EVEPNEV-SYC----ILATAHAVARLYTVAETYVEALEKSMTG-NNWSTLDV 240 (464)
Q Consensus 176 ~-----~~~~~---~~a~~~~~~m~~~-~~~p~~~-~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 240 (464)
. ..+++ ++|+..++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+ |+ .....
T Consensus 199 ~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~ 277 (765)
T PRK10049 199 FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRW 277 (765)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHH
Confidence 2 12234 7788899988854 2233321 111 1134456779999999999999887532 32 22233
Q ss_pred HHHHHHhhcChhhHHHHHHHhccCCCCc----hhhHHHHHHHhhccCChHHHHHHHHHHHhccc-----------cCC--
Q 044770 241 LIILYGYLAKGKDLERIWATVQELPNVR----SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ-----------LKA-- 303 (464)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~-- 303 (464)
+..++...|++++|+..++.+....+.+ ......+..++...|++++|..+++.+..... .|+
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 5778999999999999999987644333 23456677788999999999999999987421 122
Q ss_pred -hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc-H
Q 044770 304 -TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-L 381 (464)
Q Consensus 304 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~ 381 (464)
...+..+...+...|+.++|+.+++++.... +-+...+..+...+...|++++|++.++.++ ...|+ .
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al---------~l~Pd~~ 427 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAE---------VLEPRNI 427 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------hhCCCCh
Confidence 1245567778899999999999999998852 3356777888888999999999999999994 34454 5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 044770 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAY 426 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 426 (464)
..+..++..+...|++++|..+++++.+.. |+...--.+=+.+
T Consensus 428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~~~--Pd~~~~~~~~~~~ 470 (765)
T PRK10049 428 NLEVEQAWTALDLQEWRQMDVLTDDVVARE--PQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 566677778899999999999999999853 6655444333333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-15 Score=144.77 Aligned_cols=411 Identities=10% Similarity=-0.001 Sum_probs=257.9
Q ss_pred CccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCc--hhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHH
Q 044770 22 FPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE--LDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLY 98 (464)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~ 98 (464)
.|..+.+....+-...+.|+++.|++.|+++.+. .|+. ..+ .++..+...|+.++|+..+++.... .......
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 3334455555666677999999999999999884 3443 233 8888888999999999999998842 1223333
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 044770 99 NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND 178 (464)
Q Consensus 99 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (464)
..+...+...|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+... .|+...+-.++..+...
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~ 182 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhc
Confidence 444668888899999999999999874 335677778888899999999999999999875 56666665554555456
Q ss_pred CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHH----------------------------------
Q 044770 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE---------------------------------- 224 (464)
Q Consensus 179 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~---------------------------------- 224 (464)
++..+|++.++++.+.. +-+...+..+..+..+.|-...|.++.+
T Consensus 183 ~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 183 DRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred chHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 66766999999998873 2244455555555555544444443332
Q ss_pred --------------HHHhc-cCCCCh-hh----HHHHHHHHHhhcChhhHHHHHHHhccCC-CCchhhHHHHHHHhhccC
Q 044770 225 --------------ALEKS-MTGNNW-ST----LDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEAFGRIA 283 (464)
Q Consensus 225 --------------~~~~~-~~~~~~-~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 283 (464)
.+... +..|.. .. ..-.+-++...++..++++.++.+.... +....+-..+.++|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 22221 111211 11 1122345556666777777777776533 445556666777777777
Q ss_pred ChHHHHHHHHHHHhccc-----cCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----------Cc--cHH-HHHH
Q 044770 284 QVSRAEELWLEMQSVKQ-----LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC-----------KP--NAI-TYRH 344 (464)
Q Consensus 284 ~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p--~~~-~~~~ 344 (464)
++++|..+++.+..... +++......|.-+|...+++++|..+++++.+.-. .| |-. .+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 77777777777654321 12333345667777777777777777777765211 12 211 2233
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc-HHHHHHHH
Q 044770 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY-TFVYNTLI 423 (464)
Q Consensus 345 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li 423 (464)
++..+...|++.+|++.++.++ ..-+-|......+.+.+...|++.+|++.++..... .|+ ..+.....
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~--------~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~ 491 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLS--------STAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQA 491 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHH
Confidence 4455666777777777777763 112225555667777777777777777777655554 243 33555556
Q ss_pred HHHHHcCCC--hhHHHHHHHhCCCCCCHHHH
Q 044770 424 KAYVKAKIN--DPNLLRRMILGGARPDAETY 452 (464)
Q Consensus 424 ~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~ 452 (464)
.++...|+. |..+.+...+. .|+....
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~ 520 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISR--SPEDIPS 520 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--CCCchhH
Confidence 666666653 55666555543 3444433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-13 Score=136.01 Aligned_cols=409 Identities=10% Similarity=-0.008 Sum_probs=236.1
Q ss_pred cchhhHHHHhhcCccChhchHHH-HHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHh-hcChHHHHHHhhh
Q 044770 10 VGSAFQSWMREGFPVHRGEIFHS-INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK-NHGISQGEKLFCC 87 (464)
Q Consensus 10 ~~~~l~~~~~~g~~~~~~~~~~~-l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~ 87 (464)
+...++ .......|++.++... .+.+.+.++|++|++.+..+.+.. +.+......|...|.. .++ +.+..+++.
T Consensus 166 Al~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~ 241 (987)
T PRK09782 166 ARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ 241 (987)
T ss_pred HHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch
Confidence 334444 2222333344444444 888889999999999999998843 2334445566667766 366 777777654
Q ss_pred cCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCC-CchhhHHHH------------------------------
Q 044770 88 IPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHS-ISYLVFNRL------------------------------ 136 (464)
Q Consensus 88 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l------------------------------ 136 (464)
.. ..+...+..+...+.+.|+.++|.+++.++...-.. |...++.-+
T Consensus 242 ~l--k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (987)
T PRK09782 242 GI--FTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGAT 319 (987)
T ss_pred hc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHH
Confidence 22 246778888888888888888888888877543211 211111111
Q ss_pred HHHhcCCCCcccHHHH-----------------------------HHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHH
Q 044770 137 IILNSSPGRRKTIPNI-----------------------------LRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187 (464)
Q Consensus 137 ~~~~~~~~~~~~a~~~-----------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (464)
+..+.+.++++.+.++ +..|.+.. +-+......+.-...+.|+.++|.++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~ 398 (987)
T PRK09782 320 LPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADL 398 (987)
T ss_pred HHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 1122222222222211 11111110 00111111111122233334444444
Q ss_pred HHHHHhC---------------------------------------------------------------CC-CC--cHh
Q 044770 188 YSDMKRS---------------------------------------------------------------EV-EP--NEV 201 (464)
Q Consensus 188 ~~~m~~~---------------------------------------------------------------~~-~p--~~~ 201 (464)
|+..... +. ++ +..
T Consensus 399 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~ 478 (987)
T PRK09782 399 LLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAA 478 (987)
T ss_pred HHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHH
Confidence 3333220 01 12 334
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc
Q 044770 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281 (464)
Q Consensus 202 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (464)
.|..+..++.. ++.++|...+.+..... |+......+...+...|+.++|...++.+...++.+ ..+..+...+.+
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~ 554 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHH
Confidence 44555544444 56666777666655432 443333334444457778888888877765543333 234556667777
Q ss_pred cCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 044770 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 361 (464)
.|++++|...++...+.. +.+...+..+...+...|++++|...+++..+ ..|+...+..+...+.+.|++++|...
T Consensus 555 ~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred CCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888777643 22222233333334445888888888888877 456677777777778888888888888
Q ss_pred HHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-cHHHHHHHHHHHHHcCCC--hhHHH
Q 044770 362 LELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK-YTFVYNTLIKAYVKAKIN--DPNLL 437 (464)
Q Consensus 362 ~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~--a~~~~ 437 (464)
++.++ ...| +...++.+...+...|++++|...+++..+.. | +...+..+-.++...|+. |...+
T Consensus 632 l~~AL---------~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 632 LRAAL---------ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred HHHHH---------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88874 2334 45566777778888888888888888877753 4 344777888888888873 77777
Q ss_pred HHHHhC
Q 044770 438 RRMILG 443 (464)
Q Consensus 438 ~~m~~~ 443 (464)
++..+.
T Consensus 701 ~~Al~l 706 (987)
T PRK09782 701 RLVIDD 706 (987)
T ss_pred HHHHhc
Confidence 777764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-15 Score=128.79 Aligned_cols=421 Identities=11% Similarity=0.052 Sum_probs=270.2
Q ss_pred cChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCch-hHHHHHHHHHhhcChHHHHHHhhhcCCCCCc------hh
Q 044770 24 VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKEL-DYSYLLEFTIKNHGISQGEKLFCCIPKDYQN------EL 96 (464)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~ 96 (464)
.+-..+..+.+.|..+.-..+|+..|+-+.+. ..-|+.- .-..+.+.+.+.+.+..|++.++......|+ ..
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivkn-kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKN-KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcc-cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 34445566667777777788899999888873 3334433 3345667788888899999988876665443 23
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCC------------C
Q 044770 97 LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAP------------H 164 (464)
Q Consensus 97 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~ 164 (464)
..+.+.-.+.+.|+++.|+.-|+...+. .|+..+--.|+-++..-|+.++..+.|..|+.....| +
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 4555666688899999999999988875 4776665556666777788888899999887643222 2
Q ss_pred hhhHHHHH-----HHHHccCC--hhHHHHHHHHHHhCCCCCcHhH---H----------HH--------HHHHHHhcChh
Q 044770 165 VSTFHILM-----KIEANDHN--IEGLMKVYSDMKRSEVEPNEVS---Y----------CI--------LATAHAVARLY 216 (464)
Q Consensus 165 ~~~~~~l~-----~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~---~----------~~--------li~~~~~~~~~ 216 (464)
....+.-+ .-.-+..+ .+++.-.--++..--+.|+-.. | .. -...+.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 22222222 11111111 1111111111111112222110 0 00 11235678888
Q ss_pred hHHHHHHHHHHhccCCCChhhHHHHHHH------------------------------------HHhhcChhhHHHHHHH
Q 044770 217 TVAETYVEALEKSMTGNNWSTLDVLIIL------------------------------------YGYLAKGKDLERIWAT 260 (464)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------------------------------~~~~~~~~~a~~~~~~ 260 (464)
+.|+++++...+..-+.-...-+.|-.. ....|+++.|.+.+++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 8888888777554332222211111111 1223556666666666
Q ss_pred hccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHH
Q 044770 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340 (464)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 340 (464)
.......-+...-.+.-.+-..|++++|+..|-++.. -..-+......+...|-...+...|++++.+.... ++-|+.
T Consensus 516 al~ndasc~ealfniglt~e~~~~ldeald~f~klh~-il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ 593 (840)
T KOG2003|consen 516 ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA-ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPA 593 (840)
T ss_pred HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHH
Confidence 6554444444444445556677888888888876654 22235566666777777778888888888776553 444677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHH
Q 044770 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420 (464)
Q Consensus 341 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 420 (464)
.+..|...|-+.|+-..|.+.+-.- -.-++.+..+...|...|....-++.|...|++..- +.|+..-|.
T Consensus 594 ilskl~dlydqegdksqafq~~yds--------yryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwq 663 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDS--------YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQ 663 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhc--------ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHH
Confidence 8888888899999999988877654 234555888888899989988889999999988765 469999999
Q ss_pred HHHHHHHHc-CCC--hhHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044770 421 TLIKAYVKA-KIN--DPNLLRRMILGGARPDAETYSLLKLAEQ 460 (464)
Q Consensus 421 ~li~~~~~~-g~~--a~~~~~~m~~~~~~p~~~t~~~L~~~~~ 460 (464)
.+|..|.+. |++ |+++++...+. ++-|...+..|++.+.
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~ 705 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhc
Confidence 999888765 664 89999988764 6667777788877653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-13 Score=134.87 Aligned_cols=371 Identities=12% Similarity=-0.005 Sum_probs=253.3
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhh
Q 044770 30 FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDK 108 (464)
Q Consensus 30 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~ 108 (464)
..++..+...|+.++|+..++.... +..........+...+...|++++|.++|+++.+..| +...+..++..+...
T Consensus 72 ~dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 72 DDWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc
Confidence 3666667777777777777777652 1111222222234466666777777777777776633 455666667777777
Q ss_pred CcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH-----
Q 044770 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG----- 183 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----- 183 (464)
++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. +.+...+..+..++.+.|-...
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 7777777777777664 3455555444444434455545777777777653 3344444444444444443333
Q ss_pred -------------------------------------------HHHHHHHHHhC-CCCCcH-hHH----HHHHHHHHhcC
Q 044770 184 -------------------------------------------LMKVYSDMKRS-EVEPNE-VSY----CILATAHAVAR 214 (464)
Q Consensus 184 -------------------------------------------a~~~~~~m~~~-~~~p~~-~~~----~~li~~~~~~~ 214 (464)
|+.-++.+... +-.|.. ..| .-.+-++...+
T Consensus 227 ~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~ 306 (822)
T PRK14574 227 KENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH 306 (822)
T ss_pred HhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh
Confidence 33333443331 112321 112 23455677889
Q ss_pred hhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCC------CCchhhHHHHHHHhhccCChHHH
Q 044770 215 LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP------NVRSKSYVLAIEAFGRIAQVSRA 288 (464)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a 288 (464)
+..++++.|+.+...+.+....+-..+.++|...+++++|..+++.+.... +.+......|.-+|...+++++|
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 999999999999998877667788999999999999999999999986632 22222346788999999999999
Q ss_pred HHHHHHHHhccc-----------cCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCC
Q 044770 289 EELWLEMQSVKQ-----------LKAT---EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354 (464)
Q Consensus 289 ~~~~~~~~~~~~-----------~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 354 (464)
..+++.+.+... .|+. ..+..++..+.-.|+..+|.+.++++.... +-|......+...+...|.
T Consensus 387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 999999987321 1211 134456777889999999999999998853 3377788888888999999
Q ss_pred hHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHH
Q 044770 355 VEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417 (464)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 417 (464)
+.+|.+.++.+ ....| +..+....+..+...|++.+|..+.+.+.+.. |+..
T Consensus 466 p~~A~~~~k~a---------~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~--Pe~~ 518 (822)
T PRK14574 466 PRKAEQELKAV---------ESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS--PEDI 518 (822)
T ss_pred HHHHHHHHHHH---------hhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC--CCch
Confidence 99999999777 33455 45666788888999999999999999888753 5554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-13 Score=117.77 Aligned_cols=358 Identities=11% Similarity=0.119 Sum_probs=208.7
Q ss_pred CCchhHHHHHHHHHhhcChHHHHHHhhhcCCC--CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 044770 60 PKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI 137 (464)
Q Consensus 60 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 137 (464)
.+..++..||.++++-.+.+.|.+++++.... ..+..+||.+|.+-.- ....+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHH
Confidence 35567777777777777777777777665544 3456666666655332 22256667777766777777777777
Q ss_pred HHhcCCCCccc----HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH-HHHHHHHHHh----CCCCC----cHhHHH
Q 044770 138 ILNSSPGRRKT----IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG-LMKVYSDMKR----SEVEP----NEVSYC 204 (464)
Q Consensus 138 ~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~----~~~~p----~~~~~~ 204 (464)
.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. ..++| |..-|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 77777776554 34556666677777777777777777666666533 3333333322 11222 233455
Q ss_pred HHHHHHHhcChhhHHHHHHHHHHhcc----CCCC---hhhHHHHHHHHHhhcChhhHHHHHHHhcc-CCCCchhhHHHHH
Q 044770 205 ILATAHAVARLYTVAETYVEALEKSM----TGNN---WSTLDVLIILYGYLAKGKDLERIWATVQE-LPNVRSKSYVLAI 276 (464)
Q Consensus 205 ~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~ 276 (464)
..+..|.+..+.+.|.++..-+.... +.|+ ..-|..+..+.+.....+.....++.+.. ...+...+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 56666666666666666555443221 2222 23455566666666666666666666654 3445555566666
Q ss_pred HHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcC-C-------------------hhH-HHHHHHHHHhCCC
Q 044770 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG-F-------------------IDK-ASGLLKEMSMNGC 335 (464)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~-------------------~~~-a~~~~~~m~~~g~ 335 (464)
++..-.|.++-..++|.++...|...+...-.-++..+++.. + +.+ ....-.+|.+.
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~-- 518 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ-- 518 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--
Confidence 666667777777777777666553333333333333333332 1 111 11112233433
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc
Q 044770 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415 (464)
Q Consensus 336 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 415 (464)
.......+.+.-.+.+.|+.++|.+++....+.+ .+....|......-+++.-.+.+++..|..+++-|...++..-
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~---~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~ 595 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH---NKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPIC 595 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC---CcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhh
Confidence 3445566777777899999999999999985321 1122333333344666777788899999999999987665332
Q ss_pred HHHHHHHHHHH
Q 044770 416 TFVYNTLIKAY 426 (464)
Q Consensus 416 ~~~~~~li~~~ 426 (464)
...-+.+...|
T Consensus 596 E~La~RI~e~f 606 (625)
T KOG4422|consen 596 EGLAQRIMEDF 606 (625)
T ss_pred hHHHHHHHHhc
Confidence 22333444444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.6e-14 Score=131.00 Aligned_cols=408 Identities=13% Similarity=0.047 Sum_probs=211.6
Q ss_pred cChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCC-CCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc--hhHHHH
Q 044770 24 VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYR-PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN--ELLYNN 100 (464)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~ 100 (464)
-+|..+..+...+.-.|+++.+.++...+....-.. .-...|-.+..+|-..|+++.|...|.+..+..++ +..+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 355556666666666666666666666665522111 11234555666666666666666666555544332 233344
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC----CcccHHHHHHHHHhC-----------------
Q 044770 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG----RRKTIPNILRQMKAD----------------- 159 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~----------------- 159 (464)
+...+...|+++.+...|+..... .+-+..+...|...|...+ ..+.|..++....+.
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 555566666666666666665554 2333444444444444442 223333333333322
Q ss_pred --------------------CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC---CCCCcH------hHHHHHHHHH
Q 044770 160 --------------------KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS---EVEPNE------VSYCILATAH 210 (464)
Q Consensus 160 --------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~------~~~~~li~~~ 210 (464)
+-++.....|.+.......|++..|...|...... ...+|. .+-..+..+.
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 22333344444444444455555555555444322 011111 1111122223
Q ss_pred HhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHH
Q 044770 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290 (464)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 290 (464)
-..++.+.|.+.|..+.+.. +.-...|.-++......+...+|...++........++..++.+...+.+...+..|.+
T Consensus 507 E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc
Confidence 33344445555555444431 11122222222222223445555555655555555555556556656666666666666
Q ss_pred HHHHHHhccc-cCChhhHHHHHHHHHh------------cCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHH
Q 044770 291 LWLEMQSVKQ-LKATEQYNSVISVYCK------------NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357 (464)
Q Consensus 291 ~~~~~~~~~~-~~~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 357 (464)
-|+.+.+.-. .+|+.+.-.|...|.+ .+..++|+++|.+.++... -|...-+-+.-.++..|++.+
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchH
Confidence 5555443211 1344443344443322 2456778888887777432 255666666677788888888
Q ss_pred HHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHcCCC--hh
Q 044770 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA-NYTKYTFVYNTLIKAYVKAKIN--DP 434 (464)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~--a~ 434 (464)
|..+|.++. .... -...+|-.+.++|..+|++..|+++|+...+. .-.-+..+.+.|.+++.+.|.. |.
T Consensus 665 A~dIFsqVr-------Ea~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 665 ARDIFSQVR-------EATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred HHHHHHHHH-------HHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 888888873 2222 12234457888888888888888888866543 3333555788888888888863 55
Q ss_pred HHHHHHHh
Q 044770 435 NLLRRMIL 442 (464)
Q Consensus 435 ~~~~~m~~ 442 (464)
+.+.....
T Consensus 737 ~~ll~a~~ 744 (1018)
T KOG2002|consen 737 EALLKARH 744 (1018)
T ss_pred HHHHHHHH
Confidence 54444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.5e-14 Score=130.27 Aligned_cols=404 Identities=12% Similarity=0.058 Sum_probs=272.2
Q ss_pred chHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCc--hhHHHHHHHHHhhcChHHHHHHhhhcCCC--------------
Q 044770 28 EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE--LDYSYLLEFTIKNHGISQGEKLFCCIPKD-------------- 91 (464)
Q Consensus 28 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------- 91 (464)
.+..+.+++-..|++++|...|-...+. .++. ..+--+..++.+.|+++.+...|+.+...
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~---~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKA---DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc---CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 3455555555555555555555555442 2222 22233444555555555555555544333
Q ss_pred -------------------------CCchhHHHHHHHHHHhhCcHHHHHHHHHHHH----HcCCCCchhhHHHHHHHhcC
Q 044770 92 -------------------------YQNELLYNNLVIACLDKGVIKLSLEYMKKMR----VLGHSISYLVFNRLIILNSS 142 (464)
Q Consensus 92 -------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~~~~l~~~~~~ 142 (464)
+.+...|-.+...+... ++..++..|.... ..+-.+.....|.+......
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence 22444454444444333 3333355554433 44555778888999999999
Q ss_pred CCCcccHHHHHHHHHhC---CCCCChh------hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhH-HHHHHHHHHh
Q 044770 143 PGRRKTIPNILRQMKAD---KVAPHVS------TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS-YCILATAHAV 212 (464)
Q Consensus 143 ~~~~~~a~~~~~~~~~~---~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~ 212 (464)
.|++..|...|...... ...+|.. +--.+...+-..++++.|.+.|..+... .|+-+. |--+....-.
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARD 542 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHh
Confidence 99999999999998764 1233332 2223566677788999999999999876 565443 3333322334
Q ss_pred cChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCC--CchhhHHHHHHHhh----------
Q 044770 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN--VRSKSYVLAIEAFG---------- 280 (464)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~---------- 280 (464)
.+...+|...++..... ...++..++.+...+.....+..|.+-|..+..... .++.+..+|.+.|.
T Consensus 543 k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred ccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 56778899999888765 445667777788889998889888887776665332 34444445555443
Q ss_pred --ccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHH
Q 044770 281 --RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358 (464)
Q Consensus 281 --~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 358 (464)
..+..++|.++|.++.+ ..+.|...-|.+...++..|++.+|..+|.+.++... -+..+|..+..+|..+|++..|
T Consensus 622 ek~kk~~~KAlq~y~kvL~-~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLR-NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHH
Confidence 23456789999999888 4556888889999999999999999999999998654 2456788899999999999999
Q ss_pred HHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc-----C-C-
Q 044770 359 FKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-----K-I- 431 (464)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g-~- 431 (464)
+++|+..+ .+..-..+..+.+.|.+++.+.|++.+|.+.+.........-...-||..+...--. + +
T Consensus 700 IqmYe~~l------kkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~ 773 (1018)
T KOG2002|consen 700 IQMYENCL------KKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKR 773 (1018)
T ss_pred HHHHHHHH------HHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccc
Confidence 99999996 445556678888999999999999999999988877755443445677655543221 1 1
Q ss_pred -------------ChhHHHHHHHhCCCC
Q 044770 432 -------------NDPNLLRRMILGGAR 446 (464)
Q Consensus 432 -------------~a~~~~~~m~~~~~~ 446 (464)
.|.++|..|...+-.
T Consensus 774 t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 774 TLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 146778888876544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-13 Score=137.64 Aligned_cols=332 Identities=7% Similarity=-0.086 Sum_probs=215.9
Q ss_pred ccChhchHHHHHHHHhhcchHHHHHHHHHHHHc-CCCCCCchhHHHHHHHHHhhcC---hHHHHHH--------------
Q 044770 23 PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRE-RPYRPKELDYSYLLEFTIKNHG---ISQGEKL-------------- 84 (464)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~-------------- 84 (464)
|-+...+..+.-...+.|+.++|.++++..... ..-.++......++..|.+.+. ..++..+
T Consensus 373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 452 (987)
T PRK09782 373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQS 452 (987)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHh
Confidence 345566666666777888888888888887651 1122233344466777777665 2223222
Q ss_pred -----------hhhcCCC-CC--chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHH
Q 044770 85 -----------FCCIPKD-YQ--NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150 (464)
Q Consensus 85 -----------~~~~~~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 150 (464)
+...... ++ +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|.
T Consensus 453 ~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 453 QLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 1111111 23 45566777766665 6777788877777664 355444434444556788888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhcc
Q 044770 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230 (464)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 230 (464)
..|+.+... +|+...+..+...+.+.|++++|...|++..+.. +++...+..+.......|++++|...+++..+..
T Consensus 530 ~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~ 606 (987)
T PRK09782 530 AAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA 606 (987)
T ss_pred HHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 888877553 4444555566677778888888888888877653 1222223333333445588888888888877643
Q ss_pred CCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHH
Q 044770 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310 (464)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 310 (464)
|+...+..+..++.+.|+.++|...++......+.+...++.+...+...|++++|...|+...+. .+-+...+..+
T Consensus 607 --P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nL 683 (987)
T PRK09782 607 --PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQL 683 (987)
T ss_pred --CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 456777777888888888888888888888877777777888888888888888888888887773 33456677788
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCccH-HHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNA-ITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 311 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
..++...|++++|...|++..+ ..|+. .+.-.......+..+++.+.+-++..
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888877 34543 33333344444555566666655555
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-13 Score=125.38 Aligned_cols=283 Identities=10% Similarity=0.028 Sum_probs=217.5
Q ss_pred hcChHHHHHHhhhcCCCCCchh-HHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHH--HHHHHhcCCCCcccHHH
Q 044770 75 NHGISQGEKLFCCIPKDYQNEL-LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN--RLIILNSSPGRRKTIPN 151 (464)
Q Consensus 75 ~g~~~~a~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~ 151 (464)
.|+++.|.+.+.......++.. .|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 5999999999888766433333 3433455558899999999999999874 45554333 33567889999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcH-------hHHHHHHHHHHhcChhhHHHHHHH
Q 044770 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE-------VSYCILATAHAVARLYTVAETYVE 224 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~ 224 (464)
.++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998876 666778889999999999999999999999987654322 123333443344445556666666
Q ss_pred HHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCCh
Q 044770 225 ALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT 304 (464)
Q Consensus 225 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 304 (464)
.+.+. .+.++.....+...+...|+.++|.++++...+. +++. -..++.+....++.+++.+..+...+. .+-|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~-~P~~~ 328 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQ-HGDTP 328 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCH--HHHHHHhhccCCChHHHHHHHHHHHhh-CCCCH
Confidence 65443 4567788889999999999999999999888773 3333 222344555669999999999998874 44467
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHH
Q 044770 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 305 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 367 (464)
..+..+...+.+.+++++|.+.|+...+ ..|+..++..+...+.+.|+.++|.+++++.+.
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7788999999999999999999999998 579999999999999999999999999998854
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-12 Score=113.16 Aligned_cols=407 Identities=11% Similarity=0.047 Sum_probs=315.4
Q ss_pred HHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC--CchhHHHHHHHHHhhcChHHHHHHhhhcCCCC
Q 044770 15 QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP--KELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92 (464)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 92 (464)
.++...|+..+.+.+..=...|-..|.+-.+..+....+. -|+.- -..+|..-...|.+.+-++-|+.+|....+.+
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avig-igvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf 546 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIG-IGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF 546 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHh-hccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence 3455567777777777777777777777777777666655 33321 23467777778888888888888888887774
Q ss_pred C-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHH
Q 044770 93 Q-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171 (464)
Q Consensus 93 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (464)
| +...|......--..|..++...+|++.... ++-....|-....-+...|++..|..++.+..+.. +.+...|-.-
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaa 624 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAA 624 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4 5678888888888889999999999999886 44456667777777888899999999999998865 4567788888
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcCh
Q 044770 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKG 251 (464)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 251 (464)
+.......++++|..+|.+.... .|+...|.--+..---.+..++|.+++++.++. ++.-...|..+.+.+-+.++.
T Consensus 625 vKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHH
Confidence 88889999999999999988765 567767665555555578899999999988876 545567788888899999999
Q ss_pred hhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 252 KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
+.|...|..-.+..+.....|..|...=-+.|.+-+|..+|++..-.+ +.+...|-..|..-.+.|..+.|..++.+.+
T Consensus 702 e~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 702 EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999888877777777788888888888999999999999988744 4588899999999999999999999998888
Q ss_pred hCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 044770 332 MNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 332 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 411 (464)
+. ++-+...|..-|....+.++-....+.+.+. .-|..+.-.+...+....+++.|.+.|.+..+.+
T Consensus 781 Qe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 781 QE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred Hh-CCccchhHHHHHHhccCcccchHHHHHHHhc------------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 75 3335566777776666666655554444332 3344455588888889999999999999999865
Q ss_pred CCCcH-HHHHHHHHHHHHcCCC--hhHHHHHHHhC
Q 044770 412 YTKYT-FVYNTLIKAYVKAKIN--DPNLLRRMILG 443 (464)
Q Consensus 412 ~~p~~-~~~~~li~~~~~~g~~--a~~~~~~m~~~ 443 (464)
||. -+|.-+..-+.++|.+ -.+++......
T Consensus 848 --~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 848 --PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred --CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 554 4999999999999964 56777777664
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-16 Score=136.60 Aligned_cols=257 Identities=9% Similarity=0.010 Sum_probs=71.9
Q ss_pred HHHHHHhhcChHHHHHHhhhc-CCC-CC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC
Q 044770 68 LLEFTIKNHGISQGEKLFCCI-PKD-YQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144 (464)
Q Consensus 68 l~~~~~~~g~~~~a~~~~~~~-~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 144 (464)
+...+.+.|++++|.++++.. ... +| +...|..+...+...++++.|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 344555555555555555332 222 12 3333444444444455555555555555544321 33344444444 4555
Q ss_pred CcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCC-CCCcHhHHHHHHHHHHhcChhhHHHHHH
Q 044770 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYV 223 (464)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~ 223 (464)
++++|.+++....+. .++...+..++..+.+.++++++..+++.+.... .+++...|..+...+.+.|+.++|...+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555444332 2333444444555555555555555555544321 2234444444555555555555555555
Q ss_pred HHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCC
Q 044770 224 EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303 (464)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 303 (464)
++..+ ..+.+......++..+...|+.+++..++....+.. +.|
T Consensus 170 ~~al~-----------------------------------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~ 213 (280)
T PF13429_consen 170 RKALE-----------------------------------LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDD 213 (280)
T ss_dssp HHHHH-----------------------------------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTS
T ss_pred HHHHH-----------------------------------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCH
Confidence 55544 333444445555556666666666666666555522 345
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 304 TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 304 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
+..|..+..+|...|+.++|+.+|++..... +.|+.....+..++...|+.++|.++..++
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 5556666666666666666666666666531 225555566666666666666666666555
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-13 Score=124.75 Aligned_cols=284 Identities=9% Similarity=-0.017 Sum_probs=216.3
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHH--HHHHHHHccCChhHHH
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFH--ILMKIEANDHNIEGLM 185 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 185 (464)
.|+++.|.+.+....+..-.| ...|........+.|+++.|...+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 699999998887765542122 223333445558999999999999999874 56654333 3367888999999999
Q ss_pred HHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCCh-------hhHHHHHHHHHhhcChhhHHHHH
Q 044770 186 KVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW-------STLDVLIILYGYLAKGKDLERIW 258 (464)
Q Consensus 186 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 258 (464)
..++++.+.. +-+...+..+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+...++|
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998875 335677888999999999999999999999988655332 13333344444455567777788
Q ss_pred HHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc
Q 044770 259 ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338 (464)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 338 (464)
+.+....+.++.....+...+...|+.++|.+++++..+. +|+. --.++.+....++.+++++..+...+.. +-|
T Consensus 253 ~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 253 KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH--HHHHHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 8877766667777889999999999999999999988873 3443 2223444456689999999999988753 225
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 339 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
...+..+...|.+.+++++|.+.|+.+ ....|+...+..+...+.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~a---------l~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAA---------LKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH---------HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566778888899999999999999998 45679998888999999999999999999987654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-12 Score=121.18 Aligned_cols=377 Identities=14% Similarity=0.050 Sum_probs=279.3
Q ss_pred hchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHH
Q 044770 27 GEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIAC 105 (464)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~ 105 (464)
.........+...|++++|.+++.+++++. +.....|..|...|-..|+.+++...+-.+... +.|...|-.+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 334445555566699999999999999965 457788999999999999999999887766555 34678999999999
Q ss_pred HhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHH----HHHHHHHccCCh
Q 044770 106 LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFH----ILMKIEANDHNI 181 (464)
Q Consensus 106 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~ 181 (464)
.+.|.++.|.-.|.+.++.. +++...+---+..|-+.|+...|...|.++.+...+.|..-+. ..++.+...++-
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999974 4555555566778999999999999999999864222322222 345667777778
Q ss_pred hHHHHHHHHHHhCC-CCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhcc---------------------------CCC
Q 044770 182 EGLMKVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSM---------------------------TGN 233 (464)
Q Consensus 182 ~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~ 233 (464)
+.|.+.++.....+ -..+...+++++..+.+...++.+......+.... ..+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 99999988876632 24456778899999999999999988877775511 112
Q ss_pred ChhhHHHHHHHHHhhcChhhHHHHHHHhcc---CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHH
Q 044770 234 NWSTLDVLIILYGYLAKGKDLERIWATVQE---LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310 (464)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 310 (464)
+..+ -.++-++......+....+...+.. .+..+...|.-+.++|...|++.+|..+|..+.....--+...|-.+
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 2222 1223344444445554444444443 24445567889999999999999999999999986655677899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCccH-HHHHHHHHHHHhcCChHHHHHHHHHhHHHH-hhhhhcCCCCcHHHHHHHH
Q 044770 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNA-ITYRHLALGCFKSNLVEEGFKALELGMKLI-TTKKVRSSTPWLETTLSII 388 (464)
Q Consensus 311 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~p~~~~~~~li 388 (464)
..+|...|..++|.+.|...+. ..|+. ..-.+|-..+.+.|+.++|.+.++.+..-. ...+.....|+........
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 9999999999999999999988 45543 444566667889999999999999863110 0013445667777767777
Q ss_pred HHHHhcCChhhHHHHHHHHHH
Q 044770 389 EIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m~~ 409 (464)
+.|...|+.++=..+-..|..
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHH
Confidence 888899998886666555543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.7e-16 Score=134.75 Aligned_cols=261 Identities=13% Similarity=0.057 Sum_probs=107.5
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhh
Q 044770 30 FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDK 108 (464)
Q Consensus 30 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~ 108 (464)
..+...+.+.|++++|+++++........+.+...|..+.......++.+.|.+.++++....+ +...+..++.. ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 3678889999999999999966544221133455566666777789999999999999988733 45677777777 799
Q ss_pred CcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCChhHHHHH
Q 044770 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD-KVAPHVSTFHILMKIEANDHNIEGLMKV 187 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (464)
+++++|.+++....+.. ++...+..++..+.+.++++++..+++.+... ..+++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998876653 56677888888999999999999999998753 2356778888999999999999999999
Q ss_pred HHHHHhCCCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCC
Q 044770 188 YSDMKRSEVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266 (464)
Q Consensus 188 ~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 266 (464)
|++..+. .| |......++..+...|+.+++..+++...+.. +.++..+..+..++...|+.++|..+++......+
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 9999887 45 47778889999999999999999998887763 55666667777777777777777777777777666
Q ss_pred CchhhHHHHHHHhhccCChHHHHHHHHHHH
Q 044770 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296 (464)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 296 (464)
.++.....+.+++...|+.++|.++..+..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 666667777777777777777777766554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-12 Score=110.37 Aligned_cols=292 Identities=10% Similarity=0.016 Sum_probs=225.0
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHH
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (464)
.|+|..|.+...+-.+.+-. ....|..-..+.-..|+.+.+-.++.+..+..-.++....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 68899999998887777644 34456666777888899999999998888753356667777778888889999999998
Q ss_pred HHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCCh-------hhHHHHHHHHHhhcChhhHHHHHHH
Q 044770 188 YSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW-------STLDVLIILYGYLAKGKDLERIWAT 260 (464)
Q Consensus 188 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (464)
.+++.+.+. -+.........+|.+.|++.....++..+.+.+.-.+. .++..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 888887753 35667888888999999999999999999888766553 4667777777777777777778888
Q ss_pred hccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHH
Q 044770 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340 (464)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 340 (464)
.......++..-.+++.-+.++|+.++|.++.++..+++..|+ -...-.+.+-++.+.-++..++.... .+-++-
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 8776666666677888888999999999999998888776665 11223345667777777777666553 223457
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc
Q 044770 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY 415 (464)
Q Consensus 341 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 415 (464)
.+.++...|.+.+.+.+|...|+.+ ....|+..+|+.+.+++.+.|+.++|.++.++....-.+|+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaA---------l~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAA---------LKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH---------HhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 7888888899999999999999977 56788999999999999999999999999887765434444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.5e-13 Score=109.31 Aligned_cols=220 Identities=10% Similarity=0.000 Sum_probs=127.8
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChh------hHHHHHHHHHccCCh
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS------TFHILMKIEANDHNI 181 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~ 181 (464)
+.+.++|.+.|-+|.+.. +.+..+.-+|.+.|.+.|.+|.|+++.+.+.+ .||.. ..-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 467788888888888743 34566667778888888888888888888876 34432 233456667788888
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCCh----hhHHHHHHHHHhhcChhhHHHH
Q 044770 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW----STLDVLIILYGYLAKGKDLERI 257 (464)
Q Consensus 182 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 257 (464)
|.|+.+|..+.+.+ ..-......|+..|-..++|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999998887654 224556778888888888999998888888776544432 1222233333333334444444
Q ss_pred HHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 258 WATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
+.......+.....-..+.+.+...|+++.|.+.++.+.+.+..--+.+...+..+|...|+.++....+.++.+
T Consensus 203 l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 203 LKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444433333333333334444444444444444444444433222223334444444444444444444444443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.9e-13 Score=121.45 Aligned_cols=290 Identities=9% Similarity=-0.067 Sum_probs=213.8
Q ss_pred HhhcChHHHHHHhhhcCCCCCc-hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchh--hHHHHHHHhcCCCCcccH
Q 044770 73 IKNHGISQGEKLFCCIPKDYQN-ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYL--VFNRLIILNSSPGRRKTI 149 (464)
Q Consensus 73 ~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~~~~~~a 149 (464)
...|+++.|.+.+.+..+..|+ ...+-....+....|+++.|.+.+.+..+.. |+.. ........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 3579999999999888776554 3444555677888899999999999987653 4443 344457778889999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHH-HHHHHHH---HhcChhhHHHHHHHH
Q 044770 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAH---AVARLYTVAETYVEA 225 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~---~~~~~~~~a~~~~~~ 225 (464)
...++.+.+.. +-+......+...+.+.|++++|.+.+..+.+.++. +...+ ..-..++ ...+..+.+.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999875 556778889999999999999999999999988754 33323 1111221 333334444445555
Q ss_pred HHhccC---CCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHH--hhccCChHHHHHHHHHHHhccc
Q 044770 226 LEKSMT---GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEA--FGRIAQVSRAEELWLEMQSVKQ 300 (464)
Q Consensus 226 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~ 300 (464)
+..... +.++..+..+...+...|+.+.|.++++...+..+.+......++.. ....++.+.+.+.++...+. .
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~ 329 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-V 329 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-C
Confidence 554422 23778888899999999999999999999888544443211112222 23457888899999887763 3
Q ss_pred cCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHH
Q 044770 301 LKAT--EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 301 ~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 367 (464)
+-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.+.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345 567788999999999999999999544433678998899999999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.6e-11 Score=102.42 Aligned_cols=386 Identities=11% Similarity=0.052 Sum_probs=269.7
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhH-HHHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELL-YNNLVI 103 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~li~ 103 (464)
|+..+.-.-..+.+.|....|...|....... +..|.+.+....-..+.+.+..+....+.. +... =--+..
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-----P~~W~AWleL~~lit~~e~~~~l~~~l~~~--~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-----PWFWSAWLELSELITDIEILSILVVGLPSD--MHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-----CcchHHHHHHHHhhchHHHHHHHHhcCccc--chHHHHHHHHH
Confidence 33333333344556788888888888877533 233444444333333444444443333321 1111 112345
Q ss_pred HHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCC--CCChhhHHHHHHHHHccCCh
Q 044770 104 ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV--APHVSTFHILMKIEANDHNI 181 (464)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 181 (464)
++....+.+++++-.+.....|++-+...-+....+.-...|++.|+.+|+++.+... --|..+|..++- ++..+-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhH
Confidence 6666778899999999999988876666556666667778899999999999988631 135667776663 333222
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHh
Q 044770 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261 (464)
Q Consensus 182 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (464)
. +.++.+-.-.=-+--+.|..++.+-|.-.++.++|..+|++.++.+. .....|+.+.+-|....+...|...++..
T Consensus 314 k--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 K--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred H--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1 22222211111133456788888899999999999999999988643 34578889999999999999999999999
Q ss_pred ccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHH
Q 044770 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341 (464)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 341 (464)
.+..+.|-..|-.|.++|.-.+.+.=|+-.|++.... .+-|...|.+|..+|.+.++.++|+..|......|- .+...
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~ 468 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSA 468 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHH
Confidence 9999999999999999999999999999999999983 445899999999999999999999999999998653 36688
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHH
Q 044770 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420 (464)
Q Consensus 342 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 420 (464)
+..+...+-+.++.++|.+.+++-++... ......| .....--|..-+.+.+++++|.......... .+...-=+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~--~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak 544 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSE--LEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAK 544 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH--hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHH
Confidence 99999999999999999999999876442 2223344 3333344667777888888887765554442 23333334
Q ss_pred HHHHHHHH
Q 044770 421 TLIKAYVK 428 (464)
Q Consensus 421 ~li~~~~~ 428 (464)
.|++.+.+
T Consensus 545 ~LlReir~ 552 (559)
T KOG1155|consen 545 ALLREIRK 552 (559)
T ss_pred HHHHHHHH
Confidence 44444433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-12 Score=118.54 Aligned_cols=287 Identities=10% Similarity=-0.015 Sum_probs=202.8
Q ss_pred HhhCcHHHHHHHHHHHHHcCCCCch-hhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChh--hHHHHHHHHHccCChh
Q 044770 106 LDKGVIKLSLEYMKKMRVLGHSISY-LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS--TFHILMKIEANDHNIE 182 (464)
Q Consensus 106 ~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 182 (464)
...|+++.|.+.+.+..+. .|+. ..+-....++.+.|+.+.|.+.+.+..+. .|+.. ..-.....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 3579999999999887765 3443 33445567788899999999999998764 34443 3344578888999999
Q ss_pred HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH---HhhcCh----hhHH
Q 044770 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY---GYLAKG----KDLE 255 (464)
Q Consensus 183 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~----~~a~ 255 (464)
.|...++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+..+.......-..++ ...+.. +...
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999875 2256678889999999999999999999999886543332211111111 222222 2333
Q ss_pred HHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhh---HHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 256 RIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ---YNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
+.++......+.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 33443333333466778888889999999999999999988743 33221 12222222345677888888888776
Q ss_pred CCCCccH---HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 333 NGCKPNA---ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 333 ~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
. .|+. ....++...+.+.|++++|.+.|+.+ ......|+...+..+...+.+.|+.++|.+++++..
T Consensus 328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a-------~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNV-------AACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh-------HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 3443 45557788888999999999999964 335667888888899999999999999999988754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-13 Score=115.51 Aligned_cols=386 Identities=12% Similarity=0.056 Sum_probs=259.6
Q ss_pred HHHHHhhcchHHHHHHHHHHHHcCCC-C--CCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhC
Q 044770 33 INRLRKLQLNKRALEVMEWVIRERPY-R--PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKG 109 (464)
Q Consensus 33 l~~~~~~~~~~~A~~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~ 109 (464)
-..+.+.+.+..|+.+|+....+.+. . ......+.+.-.+.+.|+++.|+.-|+...+..|+..+--.|+-++..-|
T Consensus 244 gni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~ 323 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIG 323 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecC
Confidence 34556777889999999988764321 0 11234455556788899999999999998877788765555555555678
Q ss_pred cHHHHHHHHHHHHHcCCCCc------------hhhHHHHHH-----HhcCCCC--cccHHHHHHHHHhCCCCCChh----
Q 044770 110 VIKLSLEYMKKMRVLGHSIS------------YLVFNRLII-----LNSSPGR--RKTIPNILRQMKADKVAPHVS---- 166 (464)
Q Consensus 110 ~~~~a~~~~~~m~~~~~~~~------------~~~~~~l~~-----~~~~~~~--~~~a~~~~~~~~~~~~~~~~~---- 166 (464)
+.++..+.|.+|+.....|| ....+..+. -.-+.+. .++++-.-..++.--+.|+-.
T Consensus 324 d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~d 403 (840)
T KOG2003|consen 324 DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCD 403 (840)
T ss_pred cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccH
Confidence 89999999999986432332 222222221 1111111 111111111111111112110
Q ss_pred ---------hH--------HHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHH--HH-------------------
Q 044770 167 ---------TF--------HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL--AT------------------- 208 (464)
Q Consensus 167 ---------~~--------~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--i~------------------- 208 (464)
.+ -.-..-+.+.|+++.|.+++.-+.+..-+.-...-+.| +.
T Consensus 404 wcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al 483 (840)
T KOG2003|consen 404 WCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL 483 (840)
T ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh
Confidence 00 01123577888888888888776543211111111100 00
Q ss_pred ---------------HHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHH
Q 044770 209 ---------------AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273 (464)
Q Consensus 209 ---------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (464)
.....|++++|.+.|++.+.....-....|+. .-.+-..|+.++|...|-.+......+..+..
T Consensus 484 n~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~ 562 (840)
T KOG2003|consen 484 NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLV 562 (840)
T ss_pred cccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 01135889999999999877643333333333 33466789999999999888776666666777
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 353 (464)
.+...|-...+...|.+++.+... -++.|+...+.|...|-+.|+-..|.+.+-+--+- ++-+..|...|...|....
T Consensus 563 qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhH
Confidence 888899999999999999988776 46668899999999999999999999876554332 4457788888888889999
Q ss_pred ChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHH-hcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC
Q 044770 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA-EKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431 (464)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 431 (464)
-+++++.+|+++ .-+.|+..-|..++..|. +.|+++.|.++++..... ++.|......|++-+...|-
T Consensus 641 f~ekai~y~eka---------aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 641 FSEKAINYFEKA---------ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHH---------HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 999999999988 678999999998877665 689999999999998764 66788888999998888883
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-11 Score=115.89 Aligned_cols=351 Identities=12% Similarity=0.082 Sum_probs=260.7
Q ss_pred HHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccH
Q 044770 71 FTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTI 149 (464)
Q Consensus 71 ~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 149 (464)
.+...|++++|.+++.++... +.+...|-.|...|-..|+.+++...+-..-..+ +-|...|..+.....+.|+++.|
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 344459999999999998887 5578899999999999999999998875554443 45678999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHH----HHHHHHHhcChhhHHHHHHHH
Q 044770 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYC----ILATAHAVARLYTVAETYVEA 225 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~li~~~~~~~~~~~a~~~~~~ 225 (464)
.-.|.+.++.. +++...+---...|-+.|+...|..-|.++.+...+.|..-+. .+++.+...++.+.|.+.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999876 6666666667788999999999999999998874322322222 345567777888999998888
Q ss_pred HHhc-cCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc-CC----------------------CCchhhH----HHHHH
Q 044770 226 LEKS-MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE-LP----------------------NVRSKSY----VLAIE 277 (464)
Q Consensus 226 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~----------------------~~~~~~~----~~l~~ 277 (464)
.... +-..+...++.++..+.+...++.+......... .. .++..+| ..+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 7663 3344556778888888888888888776555443 00 0011111 12334
Q ss_pred HhhccCChHHHHHHHHHHHhccccC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCh
Q 044770 278 AFGRIAQVSRAEELWLEMQSVKQLK--ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355 (464)
Q Consensus 278 ~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 355 (464)
++......+....+.....+....| +...|.-+..+|...|++.+|+.+|..+...-..-+...|..+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 4555555555666666666655333 56678889999999999999999999999865445677888999999999999
Q ss_pred HHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHH--------HcCCCCcHHHHHHHHHHHH
Q 044770 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK--------KANYTKYTFVYNTLIKAYV 427 (464)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~li~~~~ 427 (464)
++|.+.++.++.. .....|.. ..|...+.+.|+.++|.++++.+. ..+..|+...--.....+.
T Consensus 466 e~A~e~y~kvl~~------~p~~~D~R--i~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 466 EEAIEFYEKVLIL------APDNLDAR--ITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHHHHHHHHhc------CCCchhhh--hhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 9999999999632 22233333 378888999999999999999854 3344555665556666777
Q ss_pred HcCC
Q 044770 428 KAKI 431 (464)
Q Consensus 428 ~~g~ 431 (464)
+.|+
T Consensus 538 ~~gk 541 (895)
T KOG2076|consen 538 QVGK 541 (895)
T ss_pred Hhhh
Confidence 7775
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.1e-11 Score=102.52 Aligned_cols=375 Identities=13% Similarity=-0.004 Sum_probs=237.7
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCCCC-chhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc-hhHHHHHHHHHHhh
Q 044770 31 HSINRLRKLQLNKRALEVMEWVIRERPYRPK-ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN-ELLYNNLVIACLDK 108 (464)
Q Consensus 31 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~ 108 (464)
..-..+.++|.+++|++.|.+.+. ..|+ +.-|+....+|...|+++++.+--....+..|+ +.++..-.+++-..
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhh
Confidence 344567789999999999999998 4577 788999999999999999988877776665443 45566666666666
Q ss_pred CcHHHHHHHH----------------------HHH--------HH-cC--CCCchhhHHHHHHHhcC--------CCC--
Q 044770 109 GVIKLSLEYM----------------------KKM--------RV-LG--HSISYLVFNRLIILNSS--------PGR-- 145 (464)
Q Consensus 109 ~~~~~a~~~~----------------------~~m--------~~-~~--~~~~~~~~~~l~~~~~~--------~~~-- 145 (464)
|++++|+.-. .+. .+ .+ +-|+.....+..+.+.. .++
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 6666654311 110 01 01 22333333333332221 000
Q ss_pred ---cccHHHHHHHHHhCCC----------------CCCh-----------hhHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 044770 146 ---RKTIPNILRQMKADKV----------------APHV-----------STFHILMKIEANDHNIEGLMKVYSDMKRSE 195 (464)
Q Consensus 146 ---~~~a~~~~~~~~~~~~----------------~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 195 (464)
..++.+.+..-...|. .++. .+...-...+.-.|+.-.|..-|+......
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 0111111111100010 1111 111111122334677788888888887764
Q ss_pred CCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHH
Q 044770 196 VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275 (464)
Q Consensus 196 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 275 (464)
..++. .|--+...|....+.++....|.+..+.+ +-++.+|..-.+...-.++++.|..=|+......+.+...|..+
T Consensus 357 ~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl 434 (606)
T KOG0547|consen 357 PAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL 434 (606)
T ss_pred cccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence 33222 26666667888888888888888887753 34667777777777778888888888888888777777777777
Q ss_pred HHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-------HHHHH--HHH
Q 044770 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN-------AITYR--HLA 346 (464)
Q Consensus 276 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-------~~~~~--~ll 346 (464)
..+..+.+++++++..|++..+ .++-.+..|+.....+...++++.|.+.|+..++. .|+ ..++. .++
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l 511 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALL 511 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHh
Confidence 7777888888888888888887 55566778888888888888888888888887762 332 22211 111
Q ss_pred HHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044770 347 LGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425 (464)
Q Consensus 347 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 425 (464)
.. --.+++..|.+++.++ ..+.| ....|..|...-...|+.++|+++|++.... ..|-.-++.+
T Consensus 512 ~~-qwk~d~~~a~~Ll~KA---------~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l-----Art~~E~~~a 576 (606)
T KOG0547|consen 512 VL-QWKEDINQAENLLRKA---------IELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL-----ARTESEMVHA 576 (606)
T ss_pred hh-chhhhHHHHHHHHHHH---------HccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----HHhHHHHHHH
Confidence 11 1237788888888887 34455 3345778888888888888888888876642 2344445555
Q ss_pred HHH
Q 044770 426 YVK 428 (464)
Q Consensus 426 ~~~ 428 (464)
|.-
T Consensus 577 ~s~ 579 (606)
T KOG0547|consen 577 YSL 579 (606)
T ss_pred HHH
Confidence 443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-13 Score=121.28 Aligned_cols=287 Identities=12% Similarity=0.018 Sum_probs=226.2
Q ss_pred hhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC----chhHHHHHHHHHHhhCcHHH
Q 044770 38 KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ----NELLYNNLVIACLDKGVIKL 113 (464)
Q Consensus 38 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~ 113 (464)
..-+.++|+..|...... +..+..+...+..+|...+++++|+++|+.+....| +...|.+.+--+-+ +-
T Consensus 331 s~y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v 404 (638)
T KOG1126|consen 331 SQYNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EV 404 (638)
T ss_pred HHHHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hH
Confidence 345678999999996552 344557788899999999999999999999887744 56778777654322 22
Q ss_pred HHHHH-HHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 044770 114 SLEYM-KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192 (464)
Q Consensus 114 a~~~~-~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 192 (464)
++..+ +.+... -+-.+.+|.++.++|.-.++.+.|++.|++..+.. +....+|+.+.+-+.....+|.|...|+...
T Consensus 405 ~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 405 ALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 23333 333443 24467899999999999999999999999998864 4478899999999999999999999999887
Q ss_pred hCCCCCcHhHHHH---HHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCch
Q 044770 193 RSEVEPNEVSYCI---LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS 269 (464)
Q Consensus 193 ~~~~~p~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 269 (464)
..|...|++ +.-.|.+.++++.|+-.|++..+.+ +.+......+...+.+.|+.++|++++++.....+.++
T Consensus 483 ----~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 483 ----GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred ----cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 445555554 5566899999999999999988753 23556667778888999999999999999988777776
Q ss_pred hhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc
Q 044770 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338 (464)
Q Consensus 270 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 338 (464)
..--.-+..+...+++++|+..++++.+ -.+.+...|..+...|.+.|+.+.|+.-|.-+.+...++.
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~-~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKE-LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHH-hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 6666667778889999999999999998 4555777889999999999999999999998888544433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-10 Score=101.30 Aligned_cols=382 Identities=9% Similarity=-0.008 Sum_probs=221.9
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCC-chhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK-ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVI 103 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~ 103 (464)
+...+...+..=.++..+..|..+++..+... |. ...|-..+.+=-..|++..|.++|++-..-.|+..+|++.|.
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~l---PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~ 182 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL---PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIK 182 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 33444445555556666666666666665522 22 223333444444556666666666665555566666666666
Q ss_pred HHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhC-CC-CCChhhHHHHHHHHHccCCh
Q 044770 104 ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD-KV-APHVSTFHILMKIEANDHNI 181 (464)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~ 181 (464)
.-.+-..++.|..+++...- +.|++.+|-...+.-.+.|++..+..+|+...+. |- ..+...+.+....-.++..+
T Consensus 183 fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ 260 (677)
T KOG1915|consen 183 FELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEY 260 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666654 3466666666666666666666666666655442 10 11122233333322333344
Q ss_pred hHHHHHHHHHHh--------------------------------------------CCCCCcHhHHHHHHHHHHhcChhh
Q 044770 182 EGLMKVYSDMKR--------------------------------------------SEVEPNEVSYCILATAHAVARLYT 217 (464)
Q Consensus 182 ~~a~~~~~~m~~--------------------------------------------~~~~p~~~~~~~li~~~~~~~~~~ 217 (464)
+.|.-+|+-... .+ +-|-.+|-..+..-...|+.+
T Consensus 261 ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~ 339 (677)
T KOG1915|consen 261 ERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKD 339 (677)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHH
Confidence 444443333322 21 234455555555555567777
Q ss_pred HHHHHHHHHHhccCCCCh-------hhHHHHHHHH---HhhcChhhHHHHHHHhccCCCCchhhHHHHHHHh----hccC
Q 044770 218 VAETYVEALEKSMTGNNW-------STLDVLIILY---GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF----GRIA 283 (464)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g 283 (464)
...++|++.... ++|-. ..|.-+--++ ....+.+.+.++++...+..+-...||.-+--.| .++.
T Consensus 340 ~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~ 418 (677)
T KOG1915|consen 340 RIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQL 418 (677)
T ss_pred HHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHc
Confidence 777777776655 33321 1111111111 2345666667777766665555555555443333 3567
Q ss_pred ChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 044770 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363 (464)
Q Consensus 284 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 363 (464)
++..|.+++.... |..|-..+|...|..-.+.++++.+..+|...++.+.. |..+|......=...|+.+.|..+|+
T Consensus 419 ~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaife 495 (677)
T KOG1915|consen 419 NLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFE 495 (677)
T ss_pred ccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 7777777777666 44566667777777777888888888888888885322 55667666666667788888888888
Q ss_pred HhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHH
Q 044770 364 LGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIK 424 (464)
Q Consensus 364 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 424 (464)
.++ ...........|-+.|+.-...|.++.|..+++++.+.. +...+|-.+..
T Consensus 496 lAi------~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 496 LAI------SQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAK 548 (677)
T ss_pred HHh------cCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHH
Confidence 885 223334445556677777778888999999988888753 44456655443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-11 Score=101.37 Aligned_cols=286 Identities=14% Similarity=0.089 Sum_probs=216.4
Q ss_pred CCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcH------hHHHHHHHHHHhcCh
Q 044770 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE------VSYCILATAHAVARL 215 (464)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~~~ 215 (464)
-+++.++|.++|-+|.+.. +.+..+.-+|.+.|.+.|..|.|+.+.+.+.++ ||. .....|..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 3567999999999999854 445556678999999999999999999999874 442 234456677889999
Q ss_pred hhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCc-----hhhHHHHHHHhhccCChHHHHH
Q 044770 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR-----SKSYVLAIEAFGRIAQVSRAEE 290 (464)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~ 290 (464)
++.|+.+|..+.+.+. --......|+..|....+|++|+++-+.+.+..+.+ ..-|.-|...+....+++.|..
T Consensus 123 ~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 9999999999887532 234567789999999999999999988777632222 2246667777778899999999
Q ss_pred HHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHh
Q 044770 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLIT 370 (464)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 370 (464)
++.+..+.+ +..+..--.+...+...|+++.|.+.++...+++..--+.+...+..+|...|+.++...++..++
T Consensus 202 ~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~---- 276 (389)
T COG2956 202 LLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM---- 276 (389)
T ss_pred HHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH----
Confidence 999998844 234445555677888999999999999999998766566788899999999999999999999984
Q ss_pred hhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC-----hhHHHHHHHhCC
Q 044770 371 TKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN-----DPNLLRRMILGG 444 (464)
Q Consensus 371 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-----a~~~~~~m~~~~ 444 (464)
.....++.. ..+...-....-.+.|...+.+-..+ +|+...+..+|..-....++ .+.+++.|....
T Consensus 277 ---~~~~g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 277 ---ETNTGADAE--LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred ---HccCCccHH--HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 233333332 34444444455566777766555544 49999999999988877654 356777777653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.1e-11 Score=100.90 Aligned_cols=284 Identities=13% Similarity=0.013 Sum_probs=224.4
Q ss_pred hcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHH
Q 044770 75 NHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNIL 153 (464)
Q Consensus 75 ~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 153 (464)
.|++..|++...+-.+. ......|..-+.+.-..|+.+.+-..+.+..+..-.++...+-+..+.....|+.+.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 58999999999887666 33556777778888889999999999999988633556667777778889999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcH-------hHHHHHHHHHHhcChhhHHHHHHHHH
Q 044770 154 RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE-------VSYCILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
+++.+.+ +.+.........+|.+.|++.....++..|.+.|.--|. .+|+.+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 9998876 677788889999999999999999999999998855443 45677777666666666666667666
Q ss_pred HhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhh
Q 044770 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306 (464)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 306 (464)
... .+.++.....++.-+...|+.++|.++.....+...... -...-.+.+-++.+.-.+..+.-.+. .+-++..
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L 330 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLL 330 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhH
Confidence 444 555667777888889999999999998887766433333 22333455667777777777665542 2234568
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhH
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 366 (464)
+.++...|.+++.|.+|...|+...+ ..|+..+|+.+..++.+.|+.++|.++.++.+
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 89999999999999999999998877 67999999999999999999999999999885
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.9e-10 Score=96.16 Aligned_cols=386 Identities=13% Similarity=0.065 Sum_probs=240.9
Q ss_pred hhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCch-hHHHHHHHHHHhhCcHHHHHH
Q 044770 38 KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE-LLYNNLVIACLDKGVIKLSLE 116 (464)
Q Consensus 38 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~ 116 (464)
.++++..|..+|+.+.... ..+...|-..+.+=.++..+..|..++++.....|.+ ..|-..+..--..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 4555677888888887622 3456677777888888999999999999987774543 456666666667899999999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC
Q 044770 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEV 196 (464)
Q Consensus 117 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 196 (464)
+|+.-.+ ..|+...|.+.++.-.+...++.|..+++...- +.|++.+|--....-.+.|+...|..+|+...+.
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~-- 236 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF-- 236 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--
Confidence 9998887 579999999999999999999999999999875 3699999998888888999999999999887653
Q ss_pred CCcHhHHHHHHHHH----HhcChhhHHHHHHHHHHhccCC----------------------------------------
Q 044770 197 EPNEVSYCILATAH----AVARLYTVAETYVEALEKSMTG---------------------------------------- 232 (464)
Q Consensus 197 ~p~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~---------------------------------------- 232 (464)
-.|...-..+..++ .++..++.|.-+|+-.+++-.+
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 11222223333333 3455666666666655543111
Q ss_pred ---CChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchh--hHHHHHH--------HhhccCChHHHHHHHHHHHhcc
Q 044770 233 ---NNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK--SYVLAIE--------AFGRIAQVSRAEELWLEMQSVK 299 (464)
Q Consensus 233 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~l~~--------~~~~~g~~~~a~~~~~~~~~~~ 299 (464)
.|-.+|-..++.....|+.+...++++....+.+|-.. -|...|- .=....+++.+.++|+...+ -
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-l 395 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-L 395 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-h
Confidence 12223333333344444445555555544443333111 1111110 00123444555555555544 2
Q ss_pred ccCChhhHHHHHHHH----HhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhc
Q 044770 300 QLKATEQYNSVISVY----CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR 375 (464)
Q Consensus 300 ~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 375 (464)
++...+||..+=-.| .++.++..|.+++...+ |..|-..+|...|..=.+.+.++.+..+++..+
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl--------- 464 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL--------- 464 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH---------
Confidence 333334444333222 24455666666666544 356666677666666666777777777777663
Q ss_pred CCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCcHHHHHHHHHHHHHcCCC--hhHHHHHHHhC
Q 044770 376 SSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKANY-TKYTFVYNTLIKAYVKAKIN--DPNLLRRMILG 443 (464)
Q Consensus 376 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~--a~~~~~~m~~~ 443 (464)
...| +..+|......-...|+.+.|..+|+-..+++. ......|-+.|.-=...|+. |-.+++++.+.
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 3444 455566666666667888888888877776532 11122555555555555543 66777777654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-12 Score=116.67 Aligned_cols=283 Identities=11% Similarity=0.044 Sum_probs=224.4
Q ss_pred ChHHHHHHhhhcCCCCCch-hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCC--CCchhhHHHHHHHhcCCCCcccHHHHH
Q 044770 77 GISQGEKLFCCIPKDYQNE-LLYNNLVIACLDKGVIKLSLEYMKKMRVLGH--SISYLVFNRLIILNSSPGRRKTIPNIL 153 (464)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 153 (464)
+..+|...|+.++...++. .....+..+|...+++++|.++|+.+.+... .-+.+.|.+.+.-+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 5678999999977775544 5556788999999999999999999987431 2357788887754432 1222222
Q ss_pred -HHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccC
Q 044770 154 -RQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMT 231 (464)
Q Consensus 154 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 231 (464)
+.+.+.. +-...+|-++.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+...
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 3333332 556779999999999999999999999999875 45 67888888888999999999999999886531
Q ss_pred CCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHH
Q 044770 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311 (464)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 311 (464)
+.+-..|--+...|.+.++++.|+-.|+...+..+.+......+...+-+.|+.++|++++++..... +.|+..--..+
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 12233455567889999999999999999999888888888899999999999999999999998743 34666666677
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCccH-HHHHHHHHHHHhcCChHHHHHHHHHhHHHHh
Q 044770 312 SVYCKNGFIDKASGLLKEMSMNGCKPNA-ITYRHLALGCFKSNLVEEGFKALELGMKLIT 370 (464)
Q Consensus 312 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 370 (464)
..+...+++++|+..++++++ +.|+. ..|..+...|-+.|+.+.|+.-|..|.++..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 788889999999999999998 66765 5566777889999999999999998877644
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.6e-10 Score=95.40 Aligned_cols=349 Identities=11% Similarity=0.036 Sum_probs=238.1
Q ss_pred CchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHH--HHH
Q 044770 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN--RLI 137 (464)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l~ 137 (464)
|...+-...-.+.+.|..+.|.+.|.......| .=.+|..|.... .+. ++...... |.+.|...+. .+.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~li---t~~----e~~~~l~~-~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELI---TDI----EILSILVV-GLPSDMHWMKKFFLK 234 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhh---chH----HHHHHHHh-cCcccchHHHHHHHH
Confidence 433334444455566777777777776655322 223333333222 111 22222222 1222211111 123
Q ss_pred HHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCcHhHHHHHHHHHHhcCh
Q 044770 138 ILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEV--EPNEVSYCILATAHAVARL 215 (464)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~ 215 (464)
.++-...+.+++..-.+.....|++-+...-+....+.-...++|+|+.+|+++.+... --|..+|+.++-. +..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhhh
Confidence 34445556778888888888888766666555556667778999999999999987731 1266788777644 3222
Q ss_pred hhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHH
Q 044770 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295 (464)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 295 (464)
.. +.++-+-...-.+--+.|...+.+.|+-.++.+.|...|++..+..+.....|+.+..-|....+...|.+.++..
T Consensus 313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 21 2222222111123345678888999999999999999999999988888889999999999999999999999999
Q ss_pred HhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhh
Q 044770 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKV 374 (464)
Q Consensus 296 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 374 (464)
.+ -.+.|-..|-.+..+|.-.+-..-|+-.|++... ++| |...|..|..+|.+.++.++|+..|..++.
T Consensus 391 vd-i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~------- 460 (559)
T KOG1155|consen 391 VD-INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL------- 460 (559)
T ss_pred Hh-cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh-------
Confidence 98 3455888999999999999999999999999988 455 678999999999999999999999999852
Q ss_pred cCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc----C-CCCcHH-HHHHHHHHHHHcCCC
Q 044770 375 RSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA----N-YTKYTF-VYNTLIKAYVKAKIN 432 (464)
Q Consensus 375 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~p~~~-~~~~li~~~~~~g~~ 432 (464)
.+ ..+...+..|.+.|-+.++.++|...|+...+. | +.|..+ .---|..-+.+.++.
T Consensus 461 ~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~ 523 (559)
T KOG1155|consen 461 LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDF 523 (559)
T ss_pred cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcch
Confidence 22 225567889999999999999999998877652 3 333233 222244555555653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-09 Score=98.29 Aligned_cols=378 Identities=11% Similarity=0.031 Sum_probs=305.6
Q ss_pred cchhhHHHHhhcCcc--ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhh
Q 044770 10 VGSAFQSWMREGFPV--HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCC 87 (464)
Q Consensus 10 ~~~~l~~~~~~g~~~--~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 87 (464)
+..++.....-|+.- -.+++..-...|.+.+.++-|..+|...++- ++.+...|......=-..|..++...+|++
T Consensus 498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 344455544445432 2356777888899999999999999999884 355677788877777788999999999999
Q ss_pred cCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChh
Q 044770 88 IPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166 (464)
Q Consensus 88 ~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (464)
.....| ....|-.....+-..|+...|..++....+.. +-+...|-+.+.......+++.|..+|.+.... .|+..
T Consensus 576 av~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeR 652 (913)
T KOG0495|consen 576 AVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTER 652 (913)
T ss_pred HHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcch
Confidence 888744 56678888888889999999999999999864 347888999999999999999999999998764 67777
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
+|..-++...-.++.++|.+++++..+. -|+ ...|-.+.+.+-+.++.+.|...|..-.+. ++..+..|..+...-
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakle 729 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLE 729 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHH
Confidence 8877777777789999999999998875 555 345667777788889999998888766554 555667788888888
Q ss_pred HhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHH
Q 044770 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 325 (464)
-+.|..-.|..+++......+.+...|...|+.=.+.|+.+.|..+..+..+ .++.+-..|..-|....+.++-.....
T Consensus 730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ-ecp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ-ECPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCccchhHHHHHHhccCcccchHHHH
Confidence 8889999999999999998889999999999999999999999999998887 556677788888888888777666665
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc-HHHHHHHHHHHHhcCChhhHHHHH
Q 044770 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LETTLSIIEIFAEKGDVGNAENLF 404 (464)
Q Consensus 326 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 404 (464)
.+++- .-|+.....+...|....+++.|...|+.++ ...|| -.+|..+...+...|.-++-.+++
T Consensus 809 ALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Rav---------k~d~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 809 ALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAV---------KKDPDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred HHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHH---------ccCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 55543 3477777788888999999999999999995 33443 456778888889999999999999
Q ss_pred HHHHHc
Q 044770 405 EELKKA 410 (464)
Q Consensus 405 ~~m~~~ 410 (464)
......
T Consensus 875 ~~c~~~ 880 (913)
T KOG0495|consen 875 KKCETA 880 (913)
T ss_pred HHHhcc
Confidence 888764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-09 Score=96.34 Aligned_cols=424 Identities=9% Similarity=0.012 Sum_probs=290.7
Q ss_pred cCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-------CC
Q 044770 21 GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-------YQ 93 (464)
Q Consensus 21 g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~ 93 (464)
|+..++....-+.+.+.-.|+++.|..+...-.- ..-|..........+.+..++++|..++...... ..
T Consensus 44 ~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l---e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~ 120 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKL---EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEK 120 (611)
T ss_pred hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcch
Confidence 5667778888888888888888888777765422 1346667777777888888999999888843211 01
Q ss_pred ch-------hHH-----HHH-------HHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCC-----------
Q 044770 94 NE-------LLY-----NNL-------VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP----------- 143 (464)
Q Consensus 94 ~~-------~~~-----~~l-------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~----------- 143 (464)
+. ..+ +.- ...|....+.++|...|.+.....+. ....+..++....-.
T Consensus 121 ~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l 199 (611)
T KOG1173|consen 121 DAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLTAQEEFELLESL 199 (611)
T ss_pred hhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcchhHHHHHHhcc
Confidence 10 001 000 11244445566666666655543211 112222222221110
Q ss_pred -------CCcccHHHHHHHH----H------------hCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcH
Q 044770 144 -------GRRKTIPNILRQM----K------------ADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE 200 (464)
Q Consensus 144 -------~~~~~a~~~~~~~----~------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 200 (464)
.+.+....+|+-. . -.++..++.......+-+-..+++.+..++++...+.. ++..
T Consensus 200 ~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~ 278 (611)
T KOG1173|consen 200 DLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHL 278 (611)
T ss_pred cHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCc
Confidence 0111111122211 0 01223344444555566777899999999999988764 4556
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhh
Q 044770 201 VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFG 280 (464)
Q Consensus 201 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (464)
..+..-|.++...|+..+-..+-.++.+. .|..+.+|-++...|...|+.++|.+.|.......+.-...|-.+...|+
T Consensus 279 ~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa 357 (611)
T KOG1173|consen 279 PCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA 357 (611)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh
Confidence 66666677888999888877777777775 55667899999999999999999999999998877777778999999999
Q ss_pred ccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCChHHHH
Q 044770 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLVEEGF 359 (464)
Q Consensus 281 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~ 359 (464)
-.|..++|+..+....+. ++-....+--+.--|.+.+.++-|.+.|.+... +.| |+..++-+.-.....+.+.+|.
T Consensus 358 ~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~ 434 (611)
T KOG1173|consen 358 GEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEAL 434 (611)
T ss_pred hcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHH
Confidence 999999999999887763 222222344455568889999999999999887 556 5666777766677789999999
Q ss_pred HHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHH
Q 044770 360 KALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLL 437 (464)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~ 437 (464)
.+|+..+....+ ......-...+++.|.++|.+.+.+++|+..++...... +.+..++.++--.|...|+. |.+.|
T Consensus 435 ~~f~~~l~~ik~-~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 435 KYFQKALEVIKS-VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHHHHhhh-ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 999999744332 111222366778999999999999999999999988754 35777999988888888974 88888
Q ss_pred HHHHhCCCCCCHHHHHHHHH
Q 044770 438 RRMILGGARPDAETYSLLKL 457 (464)
Q Consensus 438 ~~m~~~~~~p~~~t~~~L~~ 457 (464)
.+-.. +.||..+...++.
T Consensus 513 hKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 513 HKALA--LKPDNIFISELLK 530 (611)
T ss_pred HHHHh--cCCccHHHHHHHH
Confidence 87765 7898877754443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-10 Score=108.42 Aligned_cols=413 Identities=12% Similarity=0.015 Sum_probs=237.6
Q ss_pred hhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHc-----------------------CCCCCCchhHHHH
Q 044770 12 SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRE-----------------------RPYRPKELDYSYL 68 (464)
Q Consensus 12 ~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~-----------------------~~~~~~~~~~~~l 68 (464)
.++-.+...|+.|+..+|.+++..|+..|+.+.|- +|..|.-+ .+-.|...+|..|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 57778888999999999999999999999999888 76666531 1234667789999
Q ss_pred HHHHHhhcChHH---HHHHhhhcCCC-----------------------CCchhHHHHHHHHHHhhCcHHHHHHHH----
Q 044770 69 LEFTIKNHGISQ---GEKLFCCIPKD-----------------------YQNELLYNNLVIACLDKGVIKLSLEYM---- 118 (464)
Q Consensus 69 ~~~~~~~g~~~~---a~~~~~~~~~~-----------------------~~~~~~~~~li~~~~~~~~~~~a~~~~---- 118 (464)
..+|...|++.. ..+.++.+... -|+.. .++......|-++.+++++
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999988654 33322221111 11111 1111122222222222222
Q ss_pred ------------HH-------------HHHcCC-CCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHH
Q 044770 119 ------------KK-------------MRVLGH-SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172 (464)
Q Consensus 119 ------------~~-------------m~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (464)
++ |.+.+. .|+..+|.+++......|+.+.|..++.+|.+.|++.+..-|-.|+
T Consensus 167 vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 167 VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred cccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 11 111112 4788899999999999999999999999999999888888777776
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhH------------------------HHHHHHHH--
Q 044770 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV------------------------AETYVEAL-- 226 (464)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~------------------------a~~~~~~~-- 226 (464)
-+ .++...+..++.-|.+.|+.|+..|+...+..+.++|.... |.+.++.-
T Consensus 247 ~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~ 323 (1088)
T KOG4318|consen 247 LG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLR 323 (1088)
T ss_pred hc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHH
Confidence 55 78888888899999999999999998876666655333211 11111110
Q ss_pred ----------HhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc----CCCCchhhHHHHHHHhhccCC--------
Q 044770 227 ----------EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE----LPNVRSKSYVLAIEAFGRIAQ-------- 284 (464)
Q Consensus 227 ----------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~-------- 284 (464)
.-.|+......|..... ....|..+..+++...+.. ..+.+...|..++.-|.+.-+
T Consensus 324 ~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~ 402 (1088)
T KOG4318|consen 324 KSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIY 402 (1088)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 00111112222222222 2225666666666666544 111122234444433332111
Q ss_pred --------------hHHHHHHHHHHHhccccCChh----------------------------hHHHHHHHHHhcCChhH
Q 044770 285 --------------VSRAEELWLEMQSVKQLKATE----------------------------QYNSVISVYCKNGFIDK 322 (464)
Q Consensus 285 --------------~~~a~~~~~~~~~~~~~~~~~----------------------------~~~~li~~~~~~~~~~~ 322 (464)
..+..++.... .||.. .-+.++..+++.-+..+
T Consensus 403 ~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK 477 (1088)
T KOG4318|consen 403 YAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLK 477 (1088)
T ss_pred HHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 11110 11233334444333334
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 044770 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402 (464)
Q Consensus 323 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 402 (464)
++..-...... ..| ..|..+|.-+....+.+.|..+.++... ....+..+..-+..+.+.+.+.+...++..
T Consensus 478 ~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~-----~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 478 ILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDT-----RDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcc-----cchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 43332222221 111 4577888888888888888888887732 333445566677888899999999999999
Q ss_pred HHHHHHHcCC-CCc-HHHHHHHHHHHHHcCCC-hh-HHHHHHHhCCC
Q 044770 403 LFEELKKANY-TKY-TFVYNTLIKAYVKAKIN-DP-NLLRRMILGGA 445 (464)
Q Consensus 403 ~~~~m~~~~~-~p~-~~~~~~li~~~~~~g~~-a~-~~~~~m~~~~~ 445 (464)
+++++.+.-. .|+ ..++-.++++....|+. ++ ++++-....|+
T Consensus 550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl 596 (1088)
T KOG4318|consen 550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGL 596 (1088)
T ss_pred HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence 9988886322 222 23555666666666653 43 44444444444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-13 Score=84.52 Aligned_cols=50 Identities=30% Similarity=0.460 Sum_probs=46.8
Q ss_pred CcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 044770 379 PWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428 (464)
Q Consensus 379 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 428 (464)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-11 Score=115.48 Aligned_cols=254 Identities=18% Similarity=0.127 Sum_probs=140.5
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC
Q 044770 117 YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEV 196 (464)
Q Consensus 117 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 196 (464)
++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-..++.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455666777777777777777777777777777 7777776666677777777777777777666554
Q ss_pred CCcHhHHHHHHHHHHhcChhhH---HHHHHHHHH----hccCCCChhhH--------------HHHHHHHHhhcChhhHH
Q 044770 197 EPNEVSYCILATAHAVARLYTV---AETYVEALE----KSMTGNNWSTL--------------DVLIILYGYLAKGKDLE 255 (464)
Q Consensus 197 ~p~~~~~~~li~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~ 255 (464)
.|...||..+..+|...||... +.+.+..+. ..|+......+ ...+......|-++.+.
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777644 111111111 11111111111 11122223333444444
Q ss_pred HHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 044770 256 RIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335 (464)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 335 (464)
+++..+.......+..+ +++-+.... ...+++........-.|++.+|..++.+-.-+|+.+.|..++.+|.+.|+
T Consensus 160 kll~~~Pvsa~~~p~~v--fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV--FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHhhCCcccccchHHH--HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 44433333222222111 233222221 12223333222211136667777777777777777777777777777777
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCC
Q 044770 336 KPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396 (464)
Q Consensus 336 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 396 (464)
+.+..-|..++-+ .++..-+..++..| ...|+.|+..|+...+..+.+.|.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgm-------qe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGM-------QEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHH-------HHhcCCCCcchhHHHHHhhhcchh
Confidence 6666666666554 55555555555555 566777777776666666655444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.5e-12 Score=102.72 Aligned_cols=237 Identities=11% Similarity=-0.007 Sum_probs=197.4
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
..-+.+.++|.+.|-+.+|.+.|+.-.+. .|-+.||-.|-+.|.+..++..|+.++.+-.+. .+.++....-+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 33467889999999999999999988876 677889999999999999999999999988775 445555556677888
Q ss_pred HhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHH
Q 044770 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 325 (464)
-..++.+++.++++.+.+..+.+.....++...|.-.++++-|++.++++.+.|.. ++..|+.+.-+|.-.+++|-++.
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 88999999999999999988888878888888999999999999999999998875 78899999999999999999999
Q ss_pred HHHHHHhCCCCccH--HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 044770 326 LLKEMSMNGCKPNA--ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403 (464)
Q Consensus 326 ~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 403 (464)
-|.+....--.|+. ..|..+.......||+..|.+.|..++ .....+...+|.|.-.-.+.|++++|..+
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL--------~~d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL--------TSDAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh--------ccCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 99998875555553 457777777788899999999999884 33344567788888888899999999999
Q ss_pred HHHHHHcCCCCcH
Q 044770 404 FEELKKANYTKYT 416 (464)
Q Consensus 404 ~~~m~~~~~~p~~ 416 (464)
+....... |+.
T Consensus 452 l~~A~s~~--P~m 462 (478)
T KOG1129|consen 452 LNAAKSVM--PDM 462 (478)
T ss_pred HHHhhhhC--ccc
Confidence 98887643 544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-11 Score=114.94 Aligned_cols=213 Identities=11% Similarity=-0.024 Sum_probs=101.2
Q ss_pred hHHHHHHhhhcCCCCC-chhHHHHHHHHHHh---------hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcc
Q 044770 78 ISQGEKLFCCIPKDYQ-NELLYNNLVIACLD---------KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRK 147 (464)
Q Consensus 78 ~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 147 (464)
.++|...|++.....| +...|..+..++.. .+++++|...+++..+.+ +-+...+..+...+...|+++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHH
Confidence 4455555655555433 23344444333321 123555555555555543 223444555555555555566
Q ss_pred cHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcH-hHHHHHHHHHHhcChhhHHHHHHHHH
Q 044770 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE-VSYCILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
+|...|++..+.+ +.+...+..+...+...|++++|...+++..+.. |+. ..+..++..+...|++++|...+++.
T Consensus 356 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 356 VGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 6666666555543 3334445555555555566666666665555442 221 12222233344455555555555555
Q ss_pred HhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHH
Q 044770 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296 (464)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 296 (464)
.....+.++..+..+..++...|+.++|...+..+....+......+.+...|...| +.|...++.+.
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 443222223334444455555555555555555544443333333444444444444 24444444433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-11 Score=101.48 Aligned_cols=231 Identities=10% Similarity=0.013 Sum_probs=113.5
Q ss_pred HHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCC
Q 044770 66 SYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR 145 (464)
Q Consensus 66 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 145 (464)
+.+..+|.+.|-+.+|.+.|+...+..|-+.+|-.|-.+|.+..++..|+.++.+-.+. .+-|+.......+.+-..++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 44444555555555555555554444444455555555555555555555555444442 22233333334444444455
Q ss_pred cccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHH
Q 044770 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225 (464)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 225 (464)
.++|.++++...+.. +.++.....+...|.-.++++-|+.+|+.+.+.|+. +...|+.+.-+|.-.++++.++.-|++
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 555555555544432 333333333444444445555555555555555433 444444444444445555555444444
Q ss_pred HHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChh
Q 044770 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305 (464)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 305 (464)
.+..-.. +..-..+|-.+.......|++..|.+.|+.....+ ..+..
T Consensus 384 Alstat~--------------------------------~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~e 430 (478)
T KOG1129|consen 384 ALSTATQ--------------------------------PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGE 430 (478)
T ss_pred HHhhccC--------------------------------cchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHH
Confidence 4333222 22233345555555555666666666666555522 22445
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
.+|.+.-.-.+.|++++|..++.....
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 566665555666666666666665554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.8e-10 Score=95.98 Aligned_cols=368 Identities=13% Similarity=0.050 Sum_probs=247.0
Q ss_pred HHHHHHHHhhcChHHHHHHhhhcCCCCCc-hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHhcCC
Q 044770 66 SYLLEFTIKNHGISQGEKLFCCIPKDYQN-ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS-YLVFNRLIILNSSP 143 (464)
Q Consensus 66 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~ 143 (464)
-...+-|.+.|++++|++.+.......|+ ...|.....+|...|+|++..+.-.+.++. .|+ +..+..-.+++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 44556678899999999999999888777 788999999999999999999988777764 344 23344444444455
Q ss_pred CCcccHH----------------------HHHHHH---------HhCC--CCCChhhHHHHHHHHHc-------------
Q 044770 144 GRRKTIP----------------------NILRQM---------KADK--VAPHVSTFHILMKIEAN------------- 177 (464)
Q Consensus 144 ~~~~~a~----------------------~~~~~~---------~~~~--~~~~~~~~~~l~~~~~~------------- 177 (464)
|++++|. +++... .+.+ +-|+.....+....+..
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 5544432 222221 1111 12333322222222211
Q ss_pred ------------cC---ChhHHHHHHHHHHhC-CCCCc-----HhHHHHHHHH-------HHhcChhhHHHHHHHHHHhc
Q 044770 178 ------------DH---NIEGLMKVYSDMKRS-EVEPN-----EVSYCILATA-------HAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 178 ------------~~---~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~-------~~~~~~~~~a~~~~~~~~~~ 229 (464)
.+ .+..|...+.+-... -..++ ... ..+..+ +.-.|+.-.|..-|+...+.
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 01 112222222111100 00111 111 111222 23467888888888888776
Q ss_pred cCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHH
Q 044770 230 MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309 (464)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 309 (464)
...++ ..|-.+..+|....+.++..+.|.......+.++.+|-.-...+.-.+++++|..=|++..... +-+...|--
T Consensus 356 ~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQ 433 (606)
T KOG0547|consen 356 DPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQ 433 (606)
T ss_pred Ccccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHH
Confidence 44333 3377778889999999999999999999888888889999999999999999999999998843 225566666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHH
Q 044770 310 VISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIE 389 (464)
Q Consensus 310 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 389 (464)
+-.+..+.++++++...|++.+++ ++--+..|+.....+...++++.|.+.|+.++++.+......+.+...+.-+++.
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence 777777889999999999999886 4445788999999999999999999999999876442222222333333333333
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC--ChhHHHHHHH
Q 044770 390 IFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRMI 441 (464)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~a~~~~~~m~ 441 (464)
.-. .+++..|.++++...+.+. .....|.+|-..-.+.|+ +|+++|++-.
T Consensus 513 ~qw-k~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 513 LQW-KEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hch-hhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333 3899999999999998652 234489999999999997 4888888644
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-13 Score=82.65 Aligned_cols=50 Identities=24% Similarity=0.479 Sum_probs=38.5
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHh
Q 044770 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212 (464)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 212 (464)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777753
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-09 Score=94.81 Aligned_cols=286 Identities=11% Similarity=-0.022 Sum_probs=160.9
Q ss_pred chhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 044770 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208 (464)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 208 (464)
+.........-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.+|++.- +-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 33344444445555666666666666665543 4555555555556666666666555555665542 224556666666
Q ss_pred HHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHH
Q 044770 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288 (464)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 288 (464)
-|...|+..+|.++|.+....... -...|..+...+.-.+..++|...+....+..+.....+--+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 666666666666666665433111 1234555666666666666666666655553333332344455556666666666
Q ss_pred HHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----C--CCccHHHHHHHHHHHHhcCChHHHHHHH
Q 044770 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN----G--CKPNAITYRHLALGCFKSNLVEEGFKAL 362 (464)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 362 (464)
.+.|..... -.+-|+...+-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+.+.+++|+..+
T Consensus 400 e~Ff~~A~a-i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALA-IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHh-cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 666666665 23335555666655555566666666666655421 0 0113345666666666777777777777
Q ss_pred HHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 044770 363 ELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428 (464)
Q Consensus 363 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 428 (464)
+.++. -.+-+..++.++.-.|...|+++.|.+.|.+... +.|+..+-..++..+..
T Consensus 479 q~aL~--------l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 479 QKALL--------LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHH--------cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 66641 2233555666666666667777777777666554 34666555555554433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-08 Score=89.66 Aligned_cols=405 Identities=12% Similarity=0.086 Sum_probs=254.1
Q ss_pred ccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHH
Q 044770 23 PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNL 101 (464)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l 101 (464)
+|-..++..-+--+...+++...+.+.+.+.+..+ --..+.....-.+...|+.++|.......... ..+.+.|..+
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~--eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~ 81 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFP--EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL 81 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCC--ccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH
Confidence 44444555545556677888999999998888443 33445555556677889999998888877665 5577889999
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 044770 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181 (464)
Q Consensus 102 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (464)
.-.+....++++|++.|......+ +-|...+.-+.-.-++.|+++.....-.+..+.. +.....|..+..++.-.|+.
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHH
Confidence 888888899999999999888764 4456677776666677788888877777777653 44456677777788888888
Q ss_pred hHHHHHHHHHHhCC-CCCcHhHHHHHHHH------HHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhH
Q 044770 182 EGLMKVYSDMKRSE-VEPNEVSYCILATA------HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254 (464)
Q Consensus 182 ~~a~~~~~~m~~~~-~~p~~~~~~~li~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (464)
..|..++++..+.. -.|+...|...... ..+.|..+.|.+.+...... +......-..-...+.+.++.++|
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 88888888887654 24565555443322 33456666666655544332 222222233344556677777777
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHhhc-cCChHHHHHHHH----------------------------------HHHhcc
Q 044770 255 ERIWATVQELPNVRSKSYVLAIEAFGR-IAQVSRAEELWL----------------------------------EMQSVK 299 (464)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~----------------------------------~~~~~~ 299 (464)
..++..+....+.+..-|..+..++.+ .+..+....+|. .+.+.|
T Consensus 239 ~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 239 VKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 777777776665555555555444432 222222223333 333334
Q ss_pred ccCChhhHHHHHHHHHhcCChhHHHHHHHHHH----hCCC----------CccHHH--HHHHHHHHHhcCChHHHHHHHH
Q 044770 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMS----MNGC----------KPNAIT--YRHLALGCFKSNLVEEGFKALE 363 (464)
Q Consensus 300 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~----------~p~~~~--~~~ll~~~~~~~~~~~a~~~~~ 363 (464)
+++ ++..+..-|-.....+-..++.-.+. ..|. +|.... +..+.+.+-+.|+++.|..+++
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 433 33444333332222221111111111 1111 344443 4456677889999999999999
Q ss_pred HhHHHHhhhhhcCCCCcH-HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC--ChhHHHHHH
Q 044770 364 LGMKLITTKKVRSSTPWL-ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI--NDPNLLRRM 440 (464)
Q Consensus 364 ~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~a~~~~~~m 440 (464)
.+ .+..|+. ..|..-.+.+...|++++|..++++..+.+. ||...-..-..-..+.++ +|.+++...
T Consensus 396 ~A---------IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 396 LA---------IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HH---------hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 88 5667765 4566667888899999999999999998653 555444355555556654 376666666
Q ss_pred HhCCC
Q 044770 441 ILGGA 445 (464)
Q Consensus 441 ~~~~~ 445 (464)
.+.|.
T Consensus 466 Tr~~~ 470 (700)
T KOG1156|consen 466 TREGF 470 (700)
T ss_pred hhccc
Confidence 66654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-10 Score=111.17 Aligned_cols=215 Identities=9% Similarity=0.019 Sum_probs=158.8
Q ss_pred cchHHHHHHHHHHHHcCCCCCC-chhHHHHHHHHHh---------hcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhh
Q 044770 40 QLNKRALEVMEWVIRERPYRPK-ELDYSYLLEFTIK---------NHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDK 108 (464)
Q Consensus 40 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~ 108 (464)
+++++|+++|+...+. .|+ ...|..+..++.. .+++++|...+++.....| +..++..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 4567999999999874 344 3455555544432 2447899999999888744 678888898999999
Q ss_pred CcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 044770 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (464)
|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.. +.+...+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999999875 3456778888899999999999999999998864 223333344455566789999999999
Q ss_pred HHHHhCCCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc
Q 044770 189 SDMKRSEVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263 (464)
Q Consensus 189 ~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (464)
++..... .| +...+..+..++...|+.++|...+.++... .+.+....+.+...+...| +.+...++.+.+
T Consensus 430 ~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9987653 34 3445677778888999999999999887554 2223444555556667666 366666666544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-10 Score=98.34 Aligned_cols=96 Identities=13% Similarity=0.166 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (464)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555555555555555555555555432 2233444444444555555555555555544432 2233344444444
Q ss_pred HHccCChhHHHHHHHHHH
Q 044770 175 EANDHNIEGLMKVYSDMK 192 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~ 192 (464)
+...|++++|.+.|++..
T Consensus 109 ~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHcccHHHHHHHHHHHH
Confidence 444455555555444444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.6e-08 Score=87.66 Aligned_cols=406 Identities=11% Similarity=0.053 Sum_probs=250.5
Q ss_pred hhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHH
Q 044770 26 RGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIAC 105 (464)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 105 (464)
+..+...++.+..+|++......|+...+..++.--...|...+......|-++.+..++++..+. ++..-+-.|..+
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~~eeyie~L 179 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEAREEYIEYL 179 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 345566677788899999999999999887777666778888888888889999999999998874 444467778888
Q ss_pred HhhCcHHHHHHHHHHHHHcC------CCCchhhHHHHHHHhcCCCCc---ccHHHHHHHHHhCCCCCCh--hhHHHHHHH
Q 044770 106 LDKGVIKLSLEYMKKMRVLG------HSISYLVFNRLIILNSSPGRR---KTIPNILRQMKADKVAPHV--STFHILMKI 174 (464)
Q Consensus 106 ~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~--~~~~~l~~~ 174 (464)
+..+++++|.+.+....... -+.+...|..+.+..++..+. -.+..++..+... -+|. ..|.+|.+.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHH
Confidence 89999999999988776421 244556677776666654432 2344555555443 3443 478999999
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChh----------------------hHHHHHHHHHHhccC-
Q 044770 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY----------------------TVAETYVEALEKSMT- 231 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~----------------------~~a~~~~~~~~~~~~- 231 (464)
|.+.|.+++|..+|++..+. ..+..-|..+..+|+.-... +-.+.-|+.+.....
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 99999999999999998765 33455566666665532211 112222332222110
Q ss_pred ----------CCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCC------chhhHHHHHHHhhccCChHHHHHHHHHH
Q 044770 232 ----------GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNV------RSKSYVLAIEAFGRIAQVSRAEELWLEM 295 (464)
Q Consensus 232 ----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 295 (464)
+-+...|..- .-...|+..+....+.+......| ....|..+...|-..|+++.|..+|++.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 0011111111 112234455555566655542222 2335788889999999999999999998
Q ss_pred HhccccCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----------Ccc------HHHHHHHHHHHHhcCCh
Q 044770 296 QSVKQLKA---TEQYNSVISVYCKNGFIDKASGLLKEMSMNGC-----------KPN------AITYRHLALGCFKSNLV 355 (464)
Q Consensus 296 ~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~------~~~~~~ll~~~~~~~~~ 355 (464)
.+...+.- ..+|......-.++.+++.|+.+++......- ++. ...|...+..-...|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 87443321 34566666666778889999999888754211 111 12344444444556777
Q ss_pred HHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHH-HHHHHHHHHHHc--CC-
Q 044770 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF-VYNTLIKAYVKA--KI- 431 (464)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~--g~- 431 (464)
+....+++.++++ .-..|-... .....+-...-++++.+++++=...=-.|++. .|++.+.-+.+. |.
T Consensus 494 estk~vYdriidL------riaTPqii~--NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 494 ESTKAVYDRIIDL------RIATPQIII--NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHHHHHHHHHHH------hcCCHHHHH--HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 7777888887543 122332221 11112233444666666665444332245555 677666666553 22
Q ss_pred --ChhHHHHHHHhCCCCCC
Q 044770 432 --NDPNLLRRMILGGARPD 448 (464)
Q Consensus 432 --~a~~~~~~m~~~~~~p~ 448 (464)
.|..+|++..+ |.+|.
T Consensus 566 lEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPE 583 (835)
T ss_pred HHHHHHHHHHHHh-cCCHH
Confidence 16677777766 55553
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-10 Score=97.52 Aligned_cols=197 Identities=11% Similarity=-0.028 Sum_probs=83.3
Q ss_pred hHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHH
Q 044770 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211 (464)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 211 (464)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 33344444444444444444444444332 2223334444444444444444444444444332 112233334444444
Q ss_pred hcChhhHHHHHHHHHHhccC-CCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHH
Q 044770 212 VARLYTVAETYVEALEKSMT-GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290 (464)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 290 (464)
..|++++|...+++...... +.....+..+..++...|+.++|...++......+.+...+..+...+...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444433211 11122333344444444444444444444444333333334444444444555555555
Q ss_pred HHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
.+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 191 YLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55444442 22233334444444444455555554444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-09 Score=98.98 Aligned_cols=288 Identities=15% Similarity=0.126 Sum_probs=161.2
Q ss_pred HHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-----C
Q 044770 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND-----H 179 (464)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~ 179 (464)
+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.+ +.|..-|..+..+..-. .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence 34455555555555443332 22223334444455555555555555555555543 22233333333333111 1
Q ss_pred ChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChh-hHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHH
Q 044770 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY-TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW 258 (464)
Q Consensus 180 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (464)
+.+....+|+++... -|.......+.-.+.....+ ..+..++..+...|+| .+|+.+-..|.......-..+++
T Consensus 92 ~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 344445555555443 23222222222122221222 2334444445555543 34444444444433333333333
Q ss_pred HHhcc---------------CCCCchh--hHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChh
Q 044770 259 ATVQE---------------LPNVRSK--SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321 (464)
Q Consensus 259 ~~~~~---------------~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 321 (464)
..... ..++... ++.-+...|...|++++|+++++...++. +..+..|..-...+-+.|++.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHH
Confidence 33221 1122222 34556777888999999999999999854 224667888888999999999
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHH--------HHHHHHHHHh
Q 044770 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET--------TLSIIEIFAE 393 (464)
Q Consensus 322 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~--------~~~li~~~~~ 393 (464)
+|.+.++..+..... |...-+-....+.+.|++++|..++... ...+..|.... ......+|.+
T Consensus 246 ~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~F-------tr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 246 EAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLF-------TREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhh-------cCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999885433 6666667777889999999999999888 33443442211 2356778899
Q ss_pred cCChhhHHHHHHHHH
Q 044770 394 KGDVGNAENLFEELK 408 (464)
Q Consensus 394 ~g~~~~A~~~~~~m~ 408 (464)
.|++..|++-|....
T Consensus 318 ~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 318 QGDYGLALKRFHAVL 332 (517)
T ss_pred HhhHHHHHHHHHHHH
Confidence 999999887766554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.1e-09 Score=96.91 Aligned_cols=296 Identities=13% Similarity=0.015 Sum_probs=153.3
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHH-HHHHHHHh
Q 044770 29 IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYN-NLVIACLD 107 (464)
Q Consensus 29 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~ 107 (464)
+......+...|++++|++.++.-.+. +.............+.+.|+.++|..++..+....|+...|- .+..+..-
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 334455666778888888887765441 333344556666777788888888888887777755544443 34343311
Q ss_pred -----hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCc-ccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 044770 108 -----KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR-KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181 (464)
Q Consensus 108 -----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (464)
..+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|+|+ +|+.+-..|....+.
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 124566677777776542 4444443333233332222 23344445555556422 344555555544444
Q ss_pred hHHHHHHHHHHhC----C----------CCCcH--hHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 182 EGLMKVYSDMKRS----E----------VEPNE--VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 182 ~~a~~~~~~m~~~----~----------~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
+-..+++...... + -.|+. .++..+.+.|...|++++|+.++++...+. +..+..|..-.+.+
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Karil 238 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 4444555444321 1 12222 233444555666666666666666666542 22244555555555
Q ss_pred HhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhh------H--HHHHHHHHhc
Q 044770 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ------Y--NSVISVYCKN 317 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~--~~li~~~~~~ 317 (464)
-..|++.+|.+..+........|-..-+-.+..+.+.|++++|.+++......+..|-... | .....+|.+.
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666655555555555544444555555555555555555555554332221111 1 2233445555
Q ss_pred CChhHHHHHHHHHHh
Q 044770 318 GFIDKASGLLKEMSM 332 (464)
Q Consensus 318 ~~~~~a~~~~~~m~~ 332 (464)
|++..|+.-|....+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555554443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-08 Score=84.29 Aligned_cols=391 Identities=11% Similarity=0.001 Sum_probs=214.8
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcH
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVI 111 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 111 (464)
+...+.+.|++++|+..++.+.... .|+...+..|.-++.-.|.+.+|.++-...++ ++..-..+.....+.++-
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k---~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK---TPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHhCcH
Confidence 3444556777888888777776632 45666666666666667777777777776654 333333344444455555
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHH-HHHHccCChhHHHHHHHH
Q 044770 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM-KIEANDHNIEGLMKVYSD 190 (464)
Q Consensus 112 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~ 190 (464)
++-..+...+.+. ..---+|.+.....-.+++|++++.+.... .|+-...|.-+ -+|.+..-++-+.++++-
T Consensus 138 k~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 138 KRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 5555444443321 111122222222233467788888877754 34544444333 345666667777777776
Q ss_pred HHhCCCCCcHh-HHHHHHHHHHh--cChhhHHH------------HHHHHHHhcc------------CCC-----ChhhH
Q 044770 191 MKRSEVEPNEV-SYCILATAHAV--ARLYTVAE------------TYVEALEKSM------------TGN-----NWSTL 238 (464)
Q Consensus 191 m~~~~~~p~~~-~~~~li~~~~~--~~~~~~a~------------~~~~~~~~~~------------~~~-----~~~~~ 238 (464)
..+. .||.. ..|.......+ .|+..+.+ ...+.+.+++ +-| -+..-
T Consensus 211 YL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEAR 288 (557)
T KOG3785|consen 211 YLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEAR 288 (557)
T ss_pred HHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhh
Confidence 6554 34432 22322221111 11111100 0111111111 001 01222
Q ss_pred HHHHHHHHhhcChhhHHHHHHHhccCCCCchh-------hHHHHHHHhhccCChHHHHHHHHHHHhccccCCh-hhHHHH
Q 044770 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSK-------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT-EQYNSV 310 (464)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l 310 (464)
..++-.|.+.++..+|..+.+.+.. .++. ++.++..-........-|.+.|+..-+.+...|+ ..-.++
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~P---ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDP---TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCC---CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 3445556777888877777665533 2222 2223333333344556677777766655443332 234556
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHH
Q 044770 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI 390 (464)
Q Consensus 311 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 390 (464)
.+.+.-..++++++..++....--..-|.. --.+.++.+..|.+.+|.++|-.+ ....++....-...|.++
T Consensus 366 As~fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~i-------s~~~ikn~~~Y~s~LArC 437 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRI-------SGPEIKNKILYKSMLARC 437 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhh-------cChhhhhhHHHHHHHHHH
Confidence 666677778888888888877643332333 335678888889999999998877 344444444334567788
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCcHH-HHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCHHHH
Q 044770 391 FAEKGDVGNAENLFEELKKANYTKYTF-VYNTLIKAYVKAKIN--DPNLLRRMILGGARPDAETY 452 (464)
Q Consensus 391 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~ 452 (464)
|.++|.++.|++++-.+.. +.+.. ..-.+.+-|.+.++. |-+.|+.+... .|++..|
T Consensus 438 yi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 438 YIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 8899999998888544433 22333 344455677777774 77777777664 4555444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.7e-09 Score=95.40 Aligned_cols=256 Identities=16% Similarity=0.107 Sum_probs=174.2
Q ss_pred HhHHHHHHHHHHhcChhhHHHHHHHHHHhc-----c-CCCChh-hHHHHHHHHHhhcChhhHHHHHHHhcc--------C
Q 044770 200 EVSYCILATAHAVARLYTVAETYVEALEKS-----M-TGNNWS-TLDVLIILYGYLAKGKDLERIWATVQE--------L 264 (464)
Q Consensus 200 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~ 264 (464)
..+...+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++++|..+|+.+.. .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555777778888888888777776543 1 112222 233466677778888888877777654 1
Q ss_pred CCCchhhHHHHHHHhhccCChHHHHHHHHHHHhc-----cc-cCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhC---C
Q 044770 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV-----KQ-LKA-TEQYNSVISVYCKNGFIDKASGLLKEMSMN---G 334 (464)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g 334 (464)
.+....+++.|..+|.+.|++++|...++...+- +. .|. ...++.+...++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2223346777888899999999888888765531 11 112 224677788889999999999999876542 1
Q ss_pred CCcc----HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHH-
Q 044770 335 CKPN----AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK- 409 (464)
Q Consensus 335 ~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 409 (464)
+.++ ..+++.+...|...|++++|.++++.++............-....++.|...|.+.++..+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 36789999999999999999999999988765433332333455678999999999999999999987653
Q ss_pred ---cCC-CCcHH-HHHHHHHHHHHcCCC--hhHHHHHHHh------CCCCCCHHHHHHH
Q 044770 410 ---ANY-TKYTF-VYNTLIKAYVKAKIN--DPNLLRRMIL------GGARPDAETYSLL 455 (464)
Q Consensus 410 ---~~~-~p~~~-~~~~li~~~~~~g~~--a~~~~~~m~~------~~~~p~~~t~~~L 455 (464)
.|. .|++. +|..|...|.+.|+. |.++.+.... .+..|+.......
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLR 497 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHh
Confidence 332 23443 899999999999984 6665554431 1344555555433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-09 Score=98.90 Aligned_cols=243 Identities=17% Similarity=0.094 Sum_probs=179.1
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhC-----C-CCCcHhH-HHHHHHHHHhcChhhHHHHHHHHHHhc---cCCC-
Q 044770 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRS-----E-VEPNEVS-YCILATAHAVARLYTVAETYVEALEKS---MTGN- 233 (464)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~- 233 (464)
..+...+...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++... ...+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666889999999999999999877543 2 2344333 344667788899999999999988543 1112
Q ss_pred ---ChhhHHHHHHHHHhhcChhhHHHHHHHhcc--------CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcc---
Q 044770 234 ---NWSTLDVLIILYGYLAKGKDLERIWATVQE--------LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK--- 299 (464)
Q Consensus 234 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--- 299 (464)
-..+++.|..+|.+.|++++|...++...+ .++.-...++.+...++..+++++|..++....+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 235677777889999999988887776544 111122346777888899999999999988665421
Q ss_pred ccCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----C--CCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 300 QLKA----TEQYNSVISVYCKNGFIDKASGLLKEMSMN----G--CKP-NAITYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 300 ~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
+.++ ..+++.|...|...|++++|.+++++.+.. + ..+ ....++.+...|.+.+++++|.++|......
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1122 357899999999999999999999988652 1 122 2456788889999999999999999998776
Q ss_pred HhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 369 ITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 369 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
. .....+.+-...+|..|...|.+.|++++|.++.+...
T Consensus 439 ~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 M-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred H-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 6 32333333455779999999999999999999988765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.6e-07 Score=77.94 Aligned_cols=379 Identities=11% Similarity=0.098 Sum_probs=227.7
Q ss_pred HHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcH
Q 044770 33 INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVI 111 (464)
Q Consensus 33 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~ 111 (464)
+.-+...+++..|+.+++.-.. .+-.-...+-.-+..++...|++++|...+..+... .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~-~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLN-LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhc-cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 5666778899999999988764 221112223334455677899999999999987766 66777888887777778999
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 044770 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191 (464)
Q Consensus 112 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 191 (464)
.+|..+-.... .+.-.-..++....+.++-++-..+.+.+.+. ..---+|....-..-.+.+|.++|...
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99988765432 23333445556666777777666666665432 122223444444556789999999999
Q ss_pred HhCCCCCcHhHHHHHH-HHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCC----
Q 044770 192 KRSEVEPNEVSYCILA-TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN---- 266 (464)
Q Consensus 192 ~~~~~~p~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 266 (464)
... .|+-...|.-+ -+|.+..-++-+.++++..... ++.++...+.......+.-....|++-.+.+..+..
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~ 254 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP 254 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch
Confidence 876 45666666544 4567888888888888877665 555555555555444443333333322222221110
Q ss_pred ----------------------------CchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHH--HHh
Q 044770 267 ----------------------------VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV--YCK 316 (464)
Q Consensus 267 ----------------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~ 316 (464)
.-+..-..|+--|.+.+++.+|..+.+++.- .++ |.-++.+ ++.
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP--~EyilKgvv~aa 328 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTP--YEYILKGVVFAA 328 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC----CCh--HHHHHHHHHHHH
Confidence 0111222345567788888888877665442 122 2223332 233
Q ss_pred cCC-------hhHHHHHHHHHHhCCCCccHH-HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHH
Q 044770 317 NGF-------IDKASGLLKEMSMNGCKPNAI-TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSII 388 (464)
Q Consensus 317 ~~~-------~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 388 (464)
.|+ ..-|.+.|+-.-+.+..-|.. --.++..++.-..++++.+.++..+ +..-...|...| .+.
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi-------~sYF~NdD~Fn~-N~A 400 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI-------ESYFTNDDDFNL-NLA 400 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcCcchhhh-HHH
Confidence 332 334555555444444332221 2234445556667788888888777 333334444433 577
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHH-HHHHHHcCCC--hhHHHHHH
Q 044770 389 EIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL-IKAYVKAKIN--DPNLLRRM 440 (464)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~--a~~~~~~m 440 (464)
.+++..|++.+|+++|-++....++ |..+|..+ .++|.+.+++ |++++-.|
T Consensus 401 QAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 8899999999999999777665443 45566654 4566666665 55544333
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.7e-08 Score=84.56 Aligned_cols=311 Identities=9% Similarity=-0.044 Sum_probs=213.9
Q ss_pred cCccChhchHHHHHHHHh--hcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhH
Q 044770 21 GFPVHRGEIFHSINRLRK--LQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELL 97 (464)
Q Consensus 21 g~~~~~~~~~~~l~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~ 97 (464)
..+++-+....-+.+++. .++...|...+-.+....-++.+......+...+...|+.++|...|+......| +...
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~ 268 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA 268 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh
Confidence 344444444444444443 2333444444444444344667788888888999999999999999998877644 3333
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 044770 98 YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177 (464)
Q Consensus 98 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (464)
.....-.+.+.|+.+....+...+.... .-+...|-.-........++..|+.+-+..++.. +.+...|-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 3334444567788888888877776642 2334444444445556677888888888887654 4455566555677888
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHH-HHHHh-hcChhhHH
Q 044770 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI-ILYGY-LAKGKDLE 255 (464)
Q Consensus 178 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~ 255 (464)
.+++++|.-.|+...... +-+...|.-++.+|...|.+.+|...-....+. .+.+..+...+. ..+.. ..--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 899999999998876542 346788999999999999999888776665443 334445554442 23322 22357788
Q ss_pred HHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 044770 256 RIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335 (464)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 335 (464)
++++......+......+.+...+...|..+.+..+++.... ..||....+.+.+.+...+.+.+|++.|..... +
T Consensus 425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~ 500 (564)
T KOG1174|consen 425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--Q 500 (564)
T ss_pred HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--c
Confidence 888887777777777788888888889999999999988776 447888889999999989999999999888877 4
Q ss_pred CccH
Q 044770 336 KPNA 339 (464)
Q Consensus 336 ~p~~ 339 (464)
.|+.
T Consensus 501 dP~~ 504 (564)
T KOG1174|consen 501 DPKS 504 (564)
T ss_pred Cccc
Confidence 4543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-06 Score=78.47 Aligned_cols=340 Identities=10% Similarity=0.082 Sum_probs=172.6
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCC----------------------cccHHHHHH
Q 044770 97 LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR----------------------RKTIPNILR 154 (464)
Q Consensus 97 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~ 154 (464)
.|++|.+-|.+.|.+++|.++|++.++. ..+..-|..+.+.|+.... ++-...-|+
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 4666666677777777777777666653 2344455555555543111 111122222
Q ss_pred HHHhCC-----------CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc------HhHHHHHHHHHHhcChhh
Q 044770 155 QMKADK-----------VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN------EVSYCILATAHAVARLYT 217 (464)
Q Consensus 155 ~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~li~~~~~~~~~~ 217 (464)
.+.+.+ -+.++..|..-.. ...|+..+-...|.+..+. +.|- ...|..+...|-..|+.+
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 222211 0112222222222 2244555555666665543 1221 234566666666777777
Q ss_pred HHHHHHHHHHhccCCCC---hhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCc------------------hhhHHHHH
Q 044770 218 VAETYVEALEKSMTGNN---WSTLDVLIILYGYLAKGKDLERIWATVQELPNVR------------------SKSYVLAI 276 (464)
Q Consensus 218 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------~~~~~~l~ 276 (464)
.|..+|++..+...+.- ..+|..-...-.+..+.+.|.++.+....-|... ...|.-.+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 77777777655432221 2344444444455556666666666554322221 11233344
Q ss_pred HHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH-HHHHHHHHHHHh---c
Q 044770 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA-ITYRHLALGCFK---S 352 (464)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~ 352 (464)
+.--..|-++....+++++.+..+. ++..--....-+-.+.-++++.++|++-+..=..|+. ..|++.+.-+.+ .
T Consensus 485 DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 4444566677777777777764433 2222222222233445566777777665543233443 345555554433 2
Q ss_pred CChHHHHHHHHHhHHHHhhhhhcCCCCcHHH--HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHH--HHHHHHHHHHH
Q 044770 353 NLVEEGFKALELGMKLITTKKVRSSTPWLET--TLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF--VYNTLIKAYVK 428 (464)
Q Consensus 353 ~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~ 428 (464)
..++.|..+|++++ + +++|...- |-.....--+.|-...|+.++++... ++++... .||..|.--..
T Consensus 564 ~klEraRdLFEqaL-------~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae 634 (835)
T KOG2047|consen 564 TKLERARDLFEQAL-------D-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAE 634 (835)
T ss_pred CCHHHHHHHHHHHH-------h-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHH
Confidence 46788888888884 2 55554322 11112222345777888888888654 3444333 77777765444
Q ss_pred c-CCC-hhHHHHHHHhCCCCCCHHHHH
Q 044770 429 A-KIN-DPNLLRRMILGGARPDAETYS 453 (464)
Q Consensus 429 ~-g~~-a~~~~~~m~~~~~~p~~~t~~ 453 (464)
. |-. ...+|++.++. -||...-.
T Consensus 635 ~yGv~~TR~iYekaIe~--Lp~~~~r~ 659 (835)
T KOG2047|consen 635 IYGVPRTREIYEKAIES--LPDSKARE 659 (835)
T ss_pred HhCCcccHHHHHHHHHh--CChHHHHH
Confidence 3 432 45667766653 46655443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-06 Score=77.44 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=105.7
Q ss_pred hHHHHHHHhhc--cCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHH--------HHHhCCCCccHH
Q 044770 271 SYVLAIEAFGR--IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK--------EMSMNGCKPNAI 340 (464)
Q Consensus 271 ~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~g~~p~~~ 340 (464)
.+..++....+ ......+..++....+..........-.++......|+++.|++++. .+.+.+..|-.
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~- 419 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT- 419 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH-
Confidence 34444444332 22456677777766663332234455666777888999999999999 55555555544
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHH
Q 044770 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420 (464)
Q Consensus 341 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 420 (464)
...+...+.+.++-+.|..++..+++-... ...+-.--..++.-+...-.+.|+.++|..+++++.+.+ ++|..+..
T Consensus 420 -V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~-~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~ 496 (652)
T KOG2376|consen 420 -VGAIVALYYKIKDNDSASAVLDSAIKWWRK-QQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLV 496 (652)
T ss_pred -HHHHHHHHHhccCCccHHHHHHHHHHHHHH-hcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHH
Confidence 455666677888888888888888654322 111111122334444555567899999999999999864 36788999
Q ss_pred HHHHHHHHcCCC-hhHH
Q 044770 421 TLIKAYVKAKIN-DPNL 436 (464)
Q Consensus 421 ~li~~~~~~g~~-a~~~ 436 (464)
.++.+|++..-+ |..+
T Consensus 497 ~lV~a~~~~d~eka~~l 513 (652)
T KOG2376|consen 497 QLVTAYARLDPEKAESL 513 (652)
T ss_pred HHHHHHHhcCHHHHHHH
Confidence 999999998743 4433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.8e-07 Score=82.06 Aligned_cols=406 Identities=14% Similarity=0.039 Sum_probs=232.6
Q ss_pred HHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCC--C
Q 044770 16 SWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY--Q 93 (464)
Q Consensus 16 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~ 93 (464)
.+....+..++..|..+.-++...|+++.+.+.|++... . .-...+.|..+...+...|.-..|..+++.-.... |
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~-~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP-F-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-h-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 344445556777777777788888888888888887765 2 23456677777777888888778888777655442 3
Q ss_pred -chhHHHHHHHHHHh-hCcHHHHHHHHHHHHH--cCC--CCchhhHHHHHHHhcCC----C-------CcccHHHHHHHH
Q 044770 94 -NELLYNNLVIACLD-KGVIKLSLEYMKKMRV--LGH--SISYLVFNRLIILNSSP----G-------RRKTIPNILRQM 156 (464)
Q Consensus 94 -~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~--~~~--~~~~~~~~~l~~~~~~~----~-------~~~~a~~~~~~~ 156 (464)
+...+-..-..|.+ .+.++++++.-.+... .+. ......|..+.-+|... . ...++.+.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 23333333333332 3555665555555444 111 11223333333333221 1 133556666666
Q ss_pred HhCC-CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCCh
Q 044770 157 KADK-VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW 235 (464)
Q Consensus 157 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 235 (464)
.+.+ -.|++..| +.--|+..++++.|.+...+..+-+-.-+...|..+.-.+...+++.+|+.+.+..... ...|-
T Consensus 471 v~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~ 547 (799)
T KOG4162|consen 471 VQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNH 547 (799)
T ss_pred HhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhh
Confidence 6543 23333333 33336667788888888888777655567777887777777788888888887766443 11111
Q ss_pred hhHHHHHHHHHhhcChhhHHHHHHHh--------------------------cc---CCCCchhhHHHHHHHhhccC---
Q 044770 236 STLDVLIILYGYLAKGKDLERIWATV--------------------------QE---LPNVRSKSYVLAIEAFGRIA--- 283 (464)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~~--------------------------~~---~~~~~~~~~~~l~~~~~~~g--- 283 (464)
.....-+..-...++.+++......+ .- .+.....++..+.......+
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 11111111111123333222211111 00 11111112221111111000
Q ss_pred ChHHHHHHHHHHHhccccC--C------hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCh
Q 044770 284 QVSRAEELWLEMQSVKQLK--A------TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355 (464)
Q Consensus 284 ~~~~a~~~~~~~~~~~~~~--~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 355 (464)
..+.. +......| + ...|......+.+.++.++|...+.+.... .......|......+...|.+
T Consensus 628 ~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 628 GSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred ccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhh
Confidence 00000 11111111 1 124556667788888999998888887763 222445566666667788999
Q ss_pred HHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHH--HHHHHHHcCCCCcHHHHHHHHHHHHHcCCC
Q 044770 356 EEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAEN--LFEELKKANYTKYTFVYNTLIKAYVKAKIN 432 (464)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 432 (464)
++|.+.|..++ .+.| ++....++...+.+.|+..-|.. ++.++.+.+. -+...|-.+-..+-+.|+.
T Consensus 701 ~EA~~af~~Al---------~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 701 EEAKEAFLVAL---------ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HHHHHHHHHHH---------hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccch
Confidence 99999998883 4555 34566789999999998888877 9999988662 3455999999999999984
Q ss_pred --hhHHHHHHHhC
Q 044770 433 --DPNLLRRMILG 443 (464)
Q Consensus 433 --a~~~~~~m~~~ 443 (464)
|.+.|....+.
T Consensus 771 ~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 771 KQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHHhh
Confidence 78888876664
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5e-08 Score=77.31 Aligned_cols=199 Identities=13% Similarity=0.016 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (464)
.+...|.-+|...|++..|..-+++.++++ +-+..+|..+...|.+.|+.+.|.+.|+...+.. +-+..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 345566777888888888888888888764 3356677777888888888888888888887764 55566777777888
Q ss_pred HccCChhHHHHHHHHHHhCC-CCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhH
Q 044770 176 ANDHNIEGLMKVYSDMKRSE-VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254 (464)
Q Consensus 176 ~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (464)
|..|++++|...|++....- ..--..||..+.-|..+.|+.+.|...|++..+.. +-.+.+...+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 88888888888888877643 12234577777777778888888888888877753 23345555666666666776666
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 255 ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
...++...........+.-..|+.-...|+.+.+.+.=..+..
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666666665555555555555555556666555554444443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.3e-08 Score=79.60 Aligned_cols=329 Identities=10% Similarity=0.005 Sum_probs=203.6
Q ss_pred hcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHH
Q 044770 20 EGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYN 99 (464)
Q Consensus 20 ~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 99 (464)
.|+......+..++..+.+..+++.|++++..-.++. +.+....+.|..+|-...++..|...++++....|...-|.
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr 81 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR 81 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 4566666778889999999999999999998877643 23667778888899999999999999999988777665554
Q ss_pred H-HHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHH--HhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 044770 100 N-LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLII--LNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176 (464)
Q Consensus 100 ~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (464)
. -...+-+.+.+..|+.+...|... |+...-..-+. .....+++..+..++++....| +..+.+...-...
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gClly 155 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheee
Confidence 3 345667889999999999888653 22222111122 2346788999999998876433 3333333333456
Q ss_pred ccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHH
Q 044770 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLER 256 (464)
Q Consensus 177 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 256 (464)
+.|+++.|.+-|+...+-+---....|+..+..| +.|+++.|++...++.+.|++..+..---+ .-+.-++..
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm------~tegiDvrs 228 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGM------TTEGIDVRS 228 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccc------eeccCchhc
Confidence 8999999999999988765333566788766554 678999999999999888765433210000 000000000
Q ss_pred HHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcc-ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 044770 257 IWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK-QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335 (464)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 335 (464)
+-....-....-...+|.-...+.+.|+++.|.+.+-+|.-+. ...|++|...+.-.- ..+++.+..+-+.-+.+...
T Consensus 229 vgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 229 VGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred ccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC
Confidence 0000000000001113333334556777777777777665322 223555555443221 22444445555555555433
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 336 KPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 336 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
....||..++-.|++..-++.|-+++.+-
T Consensus 308 -fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 308 -FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred -CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 23567777777777777777776666543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-08 Score=86.94 Aligned_cols=128 Identities=9% Similarity=-0.085 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (464)
..|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|...|+...+.. +-+..+|..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345555566666666666666666666643 2345566666666666666666666666666543 23345555566666
Q ss_pred HccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHH
Q 044770 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227 (464)
Q Consensus 176 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 227 (464)
...|++++|.+.|+...+. .|+..........+...++.++|...+.+..
T Consensus 143 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 6666666666666666554 2332211111122233455666666665443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-08 Score=87.96 Aligned_cols=154 Identities=10% Similarity=-0.047 Sum_probs=119.3
Q ss_pred HhhcchHHHHHHHHHHHHcCCCCCC--chhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHH
Q 044770 37 RKLQLNKRALEVMEWVIRERPYRPK--ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKL 113 (464)
Q Consensus 37 ~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~ 113 (464)
...+..+.++.-+.+++......|+ ...|..+...+...|+.++|...|++..+..| +...|+.+...+...|++++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3445667888888888864444443 24577788889999999999999999887744 67899999999999999999
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 044770 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 114 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 193 (464)
|...|+...+.. +-+..+|..+..++...|++++|.+.|+...+. .|+..........+...+++++|...|++...
T Consensus 117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999999854 234677888888889999999999999999875 34443223333334567889999999977653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8e-08 Score=76.20 Aligned_cols=196 Identities=8% Similarity=-0.047 Sum_probs=143.9
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHh
Q 044770 29 IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLD 107 (464)
Q Consensus 29 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~ 107 (464)
...+.-.|.+.|+...|..-++..++.. +.+..+|..+...|.+.|+.+.|.+.|++.... +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 3446667778888888888888888743 345567778888888888888888888887776 3456777888888888
Q ss_pred hCcHHHHHHHHHHHHHcCC-CCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHH
Q 044770 108 KGVIKLSLEYMKKMRVLGH-SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (464)
.|++++|...|++....-. .--..+|..+.-+..+.|+.+.|...|++.++.. +-...+.-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 8888888888888776422 2235677777777778888888888888887754 3344556667777778888888888
Q ss_pred HHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 187 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
+++.....+. ++..+.-..|..--..|+.+.+-++=..+..
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8888777664 6777777777777777877777666555544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.8e-07 Score=81.42 Aligned_cols=311 Identities=8% Similarity=-0.016 Sum_probs=143.5
Q ss_pred hHHHHHHHHHhhcChHHHHHHhhhcCCC-CCch---hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHH---H
Q 044770 64 DYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNE---LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNR---L 136 (464)
Q Consensus 64 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---l 136 (464)
.|..+...+...|+.+.+.+.+...... .++. .........+...|++++|.+.+++..+.. +.|...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 3444455555566666655555443332 1111 112222334455677777777777666642 223333331 1
Q ss_pred HHHhcCCCCcccHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCh
Q 044770 137 IILNSSPGRRKTIPNILRQMKADKVAPH-VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215 (464)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 215 (464)
.......+..+.+.+.+... .+..|+ ......+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 11112233344444444331 111222 2233344455666666666666666666543 2234445555556666666
Q ss_pred hhHHHHHHHHHHhccCC-CChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHH
Q 044770 216 YTVAETYVEALEKSMTG-NNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294 (464)
Q Consensus 216 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 294 (464)
+++|..++++....... ++.. ...|..+...+...|++++|..+++.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~--------------------------------~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLR--------------------------------GHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchh--------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666665443211 1110 11233455556666666666666666
Q ss_pred HHhccc-cCChhhH-H--HHHHHHHhcCChhHHHHH--HHHHHhCCC--CccHHHHHHHHHHHHhcCChHHHHHHHHHhH
Q 044770 295 MQSVKQ-LKATEQY-N--SVISVYCKNGFIDKASGL--LKEMSMNGC--KPNAITYRHLALGCFKSNLVEEGFKALELGM 366 (464)
Q Consensus 295 ~~~~~~-~~~~~~~-~--~li~~~~~~~~~~~a~~~--~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 366 (464)
...... .+..... + .++.-+...|....+..+ +........ ............++...|+.+.|...++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 212 HIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALK 291 (355)
T ss_pred HhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 543221 0111111 1 122222233332222222 111111000 0111222245566778889999999998885
Q ss_pred HHHhhhhhcCCC-CcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 367 KLITTKKVRSST-PWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 367 ~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
.....+...+.. ..+...-...-++...|+.++|.+.+.+....
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 292 GRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 433221001111 11222223334456899999999999887753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.4e-06 Score=72.20 Aligned_cols=394 Identities=12% Similarity=0.024 Sum_probs=236.9
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcC------------------CCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRER------------------PYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ 93 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 93 (464)
++....+...+..|++-|....++. ....+...-...+.+|.-.++-+.|...+...+....
T Consensus 49 l~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r 128 (564)
T KOG1174|consen 49 LLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLR 128 (564)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCcccc
Confidence 3444445566777888777766521 0111222345667778888899999999888876521
Q ss_pred chhHHHHHHHHHHhhC-c-HHH-------------HHHHHHHHHHcC---------------CCCchhhHHHHHHHhc--
Q 044770 94 NELLYNNLVIACLDKG-V-IKL-------------SLEYMKKMRVLG---------------HSISYLVFNRLIILNS-- 141 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~-~-~~~-------------a~~~~~~m~~~~---------------~~~~~~~~~~l~~~~~-- 141 (464)
. .--|.++.-+-+.| + .++ |++.+.-..+.+ ++|...+...-+.+++
T Consensus 129 ~-p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~ 207 (564)
T KOG1174|consen 129 S-PRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQM 207 (564)
T ss_pred c-hhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHH
Confidence 1 12222222222221 1 111 222222222222 2222233333333332
Q ss_pred CCCCcccHHHHHHHHHh-CCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhH-HHHHHHHHHhcChhhHH
Q 044770 142 SPGRRKTIPNILRQMKA-DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS-YCILATAHAVARLYTVA 219 (464)
Q Consensus 142 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~a 219 (464)
-.++...+...+-.+.. .-++.|+.....+.+.+...|+.++|...|++.... .|+..+ .....-.+.+.|+.+..
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhH
Confidence 23444444444444433 335677788888899999999999999999887754 333222 22222234567777777
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcc
Q 044770 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299 (464)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 299 (464)
..+...+.... .-....|-.-........+++.|..+-+......+.+...+..-...+...|++++|.-.|+......
T Consensus 286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 77766665432 12222333334445566677777777777666555555556656677888899999999998877632
Q ss_pred ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHH-HHHH-hcCChHHHHHHHHHhHHHHhhhhhcCC
Q 044770 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA-LGCF-KSNLVEEGFKALELGMKLITTKKVRSS 377 (464)
Q Consensus 300 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~ 377 (464)
+-+..+|..++.+|...|++.+|..+-+..... +.-+..+...+. ..|. ...--++|..+++.. ..+
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~---------L~~ 433 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS---------LKI 433 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh---------hcc
Confidence 236778999999999999999988877666553 333555555442 2232 233457788888876 455
Q ss_pred CCc-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHHHHHHh
Q 044770 378 TPW-LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLLRRMIL 442 (464)
Q Consensus 378 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~~~m~~ 442 (464)
.|+ ....+.+...+...|+.+++..++++.... .||...-+.|-..+...+.. |+..|....+
T Consensus 434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 664 234557777788889999999999887764 47888888887777777653 6666665554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.1e-07 Score=82.84 Aligned_cols=197 Identities=9% Similarity=-0.036 Sum_probs=128.2
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchh-HHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHH
Q 044770 29 IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELD-YSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACL 106 (464)
Q Consensus 29 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~ 106 (464)
+..+...+...|+.+.+.+.+....+.....++... .......+...|++++|.+.+++.....| +...+.. ...+.
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~ 87 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAF 87 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHH
Confidence 444445555667778877777776654432333222 22223355678899999999988766644 4444442 22222
Q ss_pred h----hCcHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 044770 107 D----KGVIKLSLEYMKKMRVLGHSIS-YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181 (464)
Q Consensus 107 ~----~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (464)
. .+....+.+.+.. .....|+ ......+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 88 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 88 GLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 2 3445555555544 1112233 3344455667888999999999999998865 55567788888999999999
Q ss_pred hHHHHHHHHHHhCCC-CCcH--hHHHHHHHHHHhcChhhHHHHHHHHHHhc
Q 044770 182 EGLMKVYSDMKRSEV-EPNE--VSYCILATAHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 182 ~~a~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 229 (464)
++|...+++...... .|+. ..|..+...+...|++++|..++++....
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 999999998876532 2232 23556777888999999999999988543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-06 Score=88.54 Aligned_cols=338 Identities=9% Similarity=-0.023 Sum_probs=215.0
Q ss_pred HHHhhcChHHHHHHhhhcCCC--CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCC------CCc--hhhHHHHHHHh
Q 044770 71 FTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH------SIS--YLVFNRLIILN 140 (464)
Q Consensus 71 ~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------~~~--~~~~~~l~~~~ 140 (464)
.+...|+++.+..+++.++.. ..+..........+...|++++|...+......-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567888888888777532 11222233444555678999999999987765311 111 11222233456
Q ss_pred cCCCCcccHHHHHHHHHhCCCCCCh----hhHHHHHHHHHccCChhHHHHHHHHHHhCC--C-CCc--HhHHHHHHHHHH
Q 044770 141 SSPGRRKTIPNILRQMKADKVAPHV----STFHILMKIEANDHNIEGLMKVYSDMKRSE--V-EPN--EVSYCILATAHA 211 (464)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~-~p~--~~~~~~li~~~~ 211 (464)
...|++++|...+++..+.--..+. ...+.+...+...|++++|...+++..... . .+. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6899999999999998763111121 234556667788999999999998876421 1 111 234455666788
Q ss_pred hcChhhHHHHHHHHHHhc----cCCC---ChhhHHHHHHHHHhhcChhhHHHHHHHhccC-----CCCchhhHHHHHHHh
Q 044770 212 VARLYTVAETYVEALEKS----MTGN---NWSTLDVLIILYGYLAKGKDLERIWATVQEL-----PNVRSKSYVLAIEAF 279 (464)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~ 279 (464)
..|++++|...+++.... +... ....+..+...+...|++++|...++..... +......+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998886542 2111 1233445566777889999999888876441 111233444566778
Q ss_pred hccCChHHHHHHHHHHHhccccC-ChhhHH-----HHHHHHHhcCChhHHHHHHHHHHhCCCCccH---HHHHHHHHHHH
Q 044770 280 GRIAQVSRAEELWLEMQSVKQLK-ATEQYN-----SVISVYCKNGFIDKASGLLKEMSMNGCKPNA---ITYRHLALGCF 350 (464)
Q Consensus 280 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~ 350 (464)
...|+++.|...++......... ....+. ..+..+...|+.+.|..++............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999998875421111 111111 1224445578999999998776542211111 11345666788
Q ss_pred hcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 044770 351 KSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 411 (464)
..|+.++|...++.++.... ..+..+ ...+...+..++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~---~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENAR---SLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHH---HhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88999999999999976532 233333 23556678888899999999999999988653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.9e-06 Score=74.73 Aligned_cols=411 Identities=11% Similarity=0.015 Sum_probs=237.6
Q ss_pred hchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHH-
Q 044770 27 GEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIAC- 105 (464)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~- 105 (464)
..+.+-+..+...+++++|++....+... .+-+...+..-+-+++..+++++|+.+.+.-.....+...+ +=.+|
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~--fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF--FEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh--HHHHHH
Confidence 35566677788899999999999999873 24556677777788899999999997776654321111111 23334
Q ss_pred -HhhCcHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhh--HHHHHHHHHccCCh
Q 044770 106 -LDKGVIKLSLEYMKKMRVLGHSIS-YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST--FHILMKIEANDHNI 181 (464)
Q Consensus 106 -~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~ 181 (464)
-+.+..++|+..++ |..++ ..+...-...+.+.|++++|..+|+.+.+.+ .++... -..++.+- -.
T Consensus 89 ~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~-~dd~d~~~r~nl~a~~----a~ 158 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN-SDDQDEERRANLLAVA----AA 158 (652)
T ss_pred HHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH----Hh
Confidence 46789999999987 33333 3355555667889999999999999998765 333221 11122111 11
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHH---HHHhcChhhHHHHHHHHHHhcc-------CCCCh-------hhHHHHHHH
Q 044770 182 EGLMKVYSDMKRSEVEPNEVSYCILAT---AHAVARLYTVAETYVEALEKSM-------TGNNW-------STLDVLIIL 244 (464)
Q Consensus 182 ~~a~~~~~~m~~~~~~p~~~~~~~li~---~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~l~~~ 244 (464)
-.+ +.+......| ..+|..+.+ .+...|++.+|+++++...+.+ -..+. ..-..+..+
T Consensus 159 l~~----~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 159 LQV----QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred hhH----HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 111 1222222233 445555544 3567899999999999883221 11111 122345566
Q ss_pred HHhhcChhhHHHHHHHhccCCCCchhh----HHHHHHHhhccCChH-HHHHHHHH------------HHh----------
Q 044770 245 YGYLAKGKDLERIWATVQELPNVRSKS----YVLAIEAFGRIAQVS-RAEELWLE------------MQS---------- 297 (464)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~-~a~~~~~~------------~~~---------- 297 (464)
+...|+-++|..++..+....+.+... -|.|+..-....-++ .++..++. +..
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999887755444422 222221111111011 01111110 000
Q ss_pred --------------------ccccCChhhHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCh
Q 044770 298 --------------------VKQLKATEQYNSVISVYC--KNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355 (464)
Q Consensus 298 --------------------~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 355 (464)
.+..|. ..+.+++.... +......+.+++...-+....-.....-..++.....|++
T Consensus 314 ~lL~l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 314 ALLALFTNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHHHHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 011122 22333333222 2234667777777766542221234445556667889999
Q ss_pred HHHHHHHHHhHHHHh-hhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc--CCCCcHH----HHHHHHHHHHH
Q 044770 356 EEGFKALELGMKLIT-TKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA--NYTKYTF----VYNTLIKAYVK 428 (464)
Q Consensus 356 ~~a~~~~~~~~~~~~-~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~----~~~~li~~~~~ 428 (464)
+.|.+++......-. +..+.+..|-.+ ..++..+.+.++.+.|..++.+...- .-.+... +|..+..--.+
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 999999993321100 004445555544 47888888888888888888876531 0012222 44444444456
Q ss_pred cCCC--hhHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044770 429 AKIN--DPNLLRRMILGGARPDAETYSLLKLAEQ 460 (464)
Q Consensus 429 ~g~~--a~~~~~~m~~~~~~p~~~t~~~L~~~~~ 460 (464)
+|+. |..+++++.+.+ .+|..+..-|+.++.
T Consensus 471 ~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYA 503 (652)
T ss_pred cCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHH
Confidence 6764 899999999854 467777777766654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.3e-08 Score=84.56 Aligned_cols=247 Identities=13% Similarity=0.012 Sum_probs=126.9
Q ss_pred hhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHH
Q 044770 74 KNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNI 152 (464)
Q Consensus 74 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (464)
-.|++..++.-.+.-... .........+.+++...|+++.++. ++... -.|.......+...+...++-+.+..-
T Consensus 13 y~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 13 YLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp CTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHHHHH
Confidence 445666555443311111 1123344455566666666554332 22222 245555554444444433333344443
Q ss_pred HHHHHhCCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccC
Q 044770 153 LRQMKADKVAP-HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231 (464)
Q Consensus 153 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 231 (464)
+++....+..+ +..........+...|++++|+++++.- .+.......+..+.+.++++.|.+.++.|.+..
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~- 161 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID- 161 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 33333222221 1122222223444556666655555331 233444445555555566666655555554431
Q ss_pred CCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHH
Q 044770 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVI 311 (464)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 311 (464)
.| .+...+ ..+.+..+...+.+.+|..+|+++.+ ...+++.+.+.+.
T Consensus 162 -eD-~~l~qL------------------------------a~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A 208 (290)
T PF04733_consen 162 -ED-SILTQL------------------------------AEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLA 208 (290)
T ss_dssp -CC-HHHHHH------------------------------HHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHH
T ss_pred -Cc-HHHHHH------------------------------HHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHH
Confidence 11 121111 11223333334568899999999876 4567888889999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCh-HHHHHHHHHh
Q 044770 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV-EEGFKALELG 365 (464)
Q Consensus 312 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~ 365 (464)
.++...|++++|.+++.+..+.... ++.++..++.+....|+. +.+.++++++
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 9999999999999999988765432 567777788877777877 6677788887
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.3e-08 Score=85.27 Aligned_cols=250 Identities=12% Similarity=-0.018 Sum_probs=135.0
Q ss_pred HHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHH
Q 044770 34 NRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKL 113 (464)
Q Consensus 34 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 113 (464)
+...-.|++..++.-.+ ... ..-..+......+.+++...|+.+.+..-...-. .|.......+...+...++-+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~-~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKS-FSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHT-STCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccC-CCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhHHHHHHHHHHHhCccchHH
Confidence 44445677777775555 221 1111123334455567777777665443333322 3555555444444433344455
Q ss_pred HHHHHHHHHHcCCC-CchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 044770 114 SLEYMKKMRVLGHS-ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192 (464)
Q Consensus 114 a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 192 (464)
++.-+++....+.. .+..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555444333322 22223333334566777777777766432 345556667777888888888888888887
Q ss_pred hCCCCCcHhHHHHHHHHHHh----cChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCc
Q 044770 193 RSEVEPNEVSYCILATAHAV----ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268 (464)
Q Consensus 193 ~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 268 (464)
+. . +..+...+..++.. ...+.+|..+|+++.+. .++++.+.+.+..++...|++++|++++.......+.+
T Consensus 159 ~~--~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 159 QI--D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp CC--S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred hc--C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 64 2 23344444444432 23567788888886554 55666666767777777777777777766666555555
Q ss_pred hhhHHHHHHHhhccCCh-HHHHHHHHHHHh
Q 044770 269 SKSYVLAIEAFGRIAQV-SRAEELWLEMQS 297 (464)
Q Consensus 269 ~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 297 (464)
+.+...++......|+. +.+.+.+.++..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 55555566655555655 455566666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-05 Score=73.77 Aligned_cols=372 Identities=11% Similarity=-0.015 Sum_probs=231.9
Q ss_pred CCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCC-chhhHH
Q 044770 57 PYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSI-SYLVFN 134 (464)
Q Consensus 57 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~ 134 (464)
.+..+...|..+.-++..+|+++.+.+.|++.... ......|+.+...+...|.-..|+.+++.-......| |...+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 35678888999999999999999999999987765 5567889999999999999999999998776543223 444444
Q ss_pred HHHHHhc-CCCCcccHHHHHHHHHhC--CC--CCChhhHHHHHHHHHc-----------cCChhHHHHHHHHHHhCCC-C
Q 044770 135 RLIILNS-SPGRRKTIPNILRQMKAD--KV--APHVSTFHILMKIEAN-----------DHNIEGLMKVYSDMKRSEV-E 197 (464)
Q Consensus 135 ~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~m~~~~~-~ 197 (464)
..-..|. +.+.++++..+-.+..+. +. ......|..+.-+|.. .....++++.+++..+.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4444454 456677777776666651 11 1222333333333322 1123457778888776642 3
Q ss_pred CcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHH
Q 044770 198 PNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277 (464)
Q Consensus 198 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 277 (464)
|+..-| +.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+......+.+-.....-+.
T Consensus 478 p~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred chHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 333222 333466789999999999999998778888999999999999999999999988766533322211111111
Q ss_pred HhhccCChHHHHHHHHHHHhc---------------------c-------ccCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 044770 278 AFGRIAQVSRAEELWLEMQSV---------------------K-------QLKATEQYNSVISVYCKNGFIDKASGLLKE 329 (464)
Q Consensus 278 ~~~~~g~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 329 (464)
.-...++.+++......+... | ..-.+.++..+..-....+ ..+..-..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-
Confidence 111234444444433332210 0 0001122222221111110 00000000
Q ss_pred HHhCCCC--ccH------HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhH
Q 044770 330 MSMNGCK--PNA------ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNA 400 (464)
Q Consensus 330 m~~~g~~--p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 400 (464)
+...-.. |+. ..|......+.+.+..++|...+.++ .++.| ....|......+...|.+++|
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea---------~~~~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEA---------SKIDPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH---------HhcchhhHHHHHHhhHHHHHHHhhHHH
Confidence 1111122 221 23444556677888899998888887 33334 566777777888899999999
Q ss_pred HHHHHHHHHcCCCCcH-HHHHHHHHHHHHcCCC--hhH--HHHHHHhCC
Q 044770 401 ENLFEELKKANYTKYT-FVYNTLIKAYVKAKIN--DPN--LLRRMILGG 444 (464)
Q Consensus 401 ~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~--a~~--~~~~m~~~~ 444 (464)
.+.|......+ |+. .+.+++-..+.+.|+. |.. ++.+|.+.+
T Consensus 704 ~~af~~Al~ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 704 KEAFLVALALD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 99998888754 654 4999999999999975 555 788887754
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4e-05 Score=70.30 Aligned_cols=102 Identities=16% Similarity=0.128 Sum_probs=74.0
Q ss_pred cCChhhHH--HHHHHHHhcCChhHHHHHHHHHHhCCCCccHH-HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCC
Q 044770 301 LKATEQYN--SVISVYCKNGFIDKASGLLKEMSMNGCKPNAI-TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377 (464)
Q Consensus 301 ~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 377 (464)
+|++..|. -++..+-+.|+++.|..+++..++ ..|+.. .|..-.+.+.+.|++++|..+++++.++ -
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--------D 435 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--------D 435 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------c
Confidence 45544444 466778889999999999999887 456543 4444456788899999999999998422 2
Q ss_pred CCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 044770 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412 (464)
Q Consensus 378 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 412 (464)
.||...-+-=..-..+..+.++|.++.......|.
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 34544433455666788999999999988887764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-05 Score=77.24 Aligned_cols=333 Identities=11% Similarity=0.129 Sum_probs=204.7
Q ss_pred hhhHHHHhhcCc--cChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCC-CCCchhHHHHHHHHHhhcChHHHHHHhhhc
Q 044770 12 SAFQSWMREGFP--VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPY-RPKELDYSYLLEFTIKNHGISQGEKLFCCI 88 (464)
Q Consensus 12 ~~l~~~~~~g~~--~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 88 (464)
++++...+.++| -|+......++++...+-+.+-+++++.+.-.... .-+...-+.|+-...+. +.....+..+++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHh
Confidence 445555555444 35666777888888888888888888887642211 11111223333333333 444555555555
Q ss_pred CCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhh
Q 044770 89 PKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST 167 (464)
Q Consensus 89 ~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 167 (464)
..- .|+ +...+..++-+++|..+|++.. .+....+.|+.- -+..+.|.+.-++.. ...+
T Consensus 1047 dnyDa~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~v 1106 (1666)
T KOG0985|consen 1047 DNYDAPD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAV 1106 (1666)
T ss_pred ccCCchh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHH
Confidence 442 122 2344556667788888886643 244455555542 234555555544432 3346
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHh
Q 044770 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247 (464)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (464)
|..+..+-.+.|...+|.+-|=+. -|+..|..++..+.+.|.|++-.+++...++....|... +.++-+|++
T Consensus 1107 WsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAk 1178 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHH
Confidence 788888888888888888766443 266778888888888899988888888887776666544 467778888
Q ss_pred hcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHH
Q 044770 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327 (464)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 327 (464)
.++..+.++++. .++......+.+-|...|.++.|.-+|..+. -|..+...+...|++..|...-
T Consensus 1179 t~rl~elE~fi~------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1179 TNRLTELEEFIA------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred hchHHHHHHHhc------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHh
Confidence 888776655432 2333345667777778888888877775443 4777777777778777776655
Q ss_pred HHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHH
Q 044770 328 KEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEE 406 (464)
Q Consensus 328 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (464)
++.- +..||-.+-.+|...+.+.-|. + ...++.....-..-|+..|-..|-+++...+++.
T Consensus 1244 RKAn------s~ktWK~VcfaCvd~~EFrlAQ-----i-------CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1244 RKAN------STKTWKEVCFACVDKEEFRLAQ-----I-------CGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred hhcc------chhHHHHHHHHHhchhhhhHHH-----h-------cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 4432 4556666666666655554332 2 2233333444455666666666666666666554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-05 Score=82.31 Aligned_cols=333 Identities=11% Similarity=-0.047 Sum_probs=203.0
Q ss_pred HHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCC--C----CCCh--hhHHHHHHHH
Q 044770 104 ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK--V----APHV--STFHILMKIE 175 (464)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~--~~~~~l~~~~ 175 (464)
.....|++..+...++.+.......+..........+...|+++++...+....+.- . .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567777777776655321111122233334445567789999999988775421 0 1111 1222233456
Q ss_pred HccCChhHHHHHHHHHHhCCCCCcH----hHHHHHHHHHHhcChhhHHHHHHHHHHhccCC---C--ChhhHHHHHHHHH
Q 044770 176 ANDHNIEGLMKVYSDMKRSEVEPNE----VSYCILATAHAVARLYTVAETYVEALEKSMTG---N--NWSTLDVLIILYG 246 (464)
Q Consensus 176 ~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~ 246 (464)
...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++....... + ...+...+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6799999999999987653111121 23455566677899999999999887643111 1 1234455667788
Q ss_pred hhcChhhHHHHHHHhcc----CCCC----chhhHHHHHHHhhccCChHHHHHHHHHHHhcc--ccC--ChhhHHHHHHHH
Q 044770 247 YLAKGKDLERIWATVQE----LPNV----RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK--QLK--ATEQYNSVISVY 314 (464)
Q Consensus 247 ~~~~~~~a~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~ 314 (464)
..|+++.|...++.... .... ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999998877554 1111 12234455666777899999999998765421 111 233445566677
Q ss_pred HhcCChhHHHHHHHHHHhCC--CCccHH--HH--HHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc---HHHHH
Q 044770 315 CKNGFIDKASGLLKEMSMNG--CKPNAI--TY--RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW---LETTL 385 (464)
Q Consensus 315 ~~~~~~~~a~~~~~~m~~~g--~~p~~~--~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~---~~~~~ 385 (464)
...|++++|...+.+..... ...... .. ...+..+...|+.+.|...+.... ....... ...+.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~-------~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAP-------KPEFANNHFLQGQWR 695 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcC-------CCCCccchhHHHHHH
Confidence 88999999999988875421 111111 10 112233455789999998887762 1111111 11234
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHc----CCCCcH-HHHHHHHHHHHHcCCC--hhHHHHHHHhC
Q 044770 386 SIIEIFAEKGDVGNAENLFEELKKA----NYTKYT-FVYNTLIKAYVKAKIN--DPNLLRRMILG 443 (464)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~--a~~~~~~m~~~ 443 (464)
.+..++...|+.++|...+++.... |..++. .+...+-.++.+.|+. |...+.+..+.
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777888999999999999987653 333322 3666777788888974 77777766654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-06 Score=86.39 Aligned_cols=233 Identities=9% Similarity=0.032 Sum_probs=117.9
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc-----hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS-----YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTF 168 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (464)
+...|-..|......++.++|.++.++.+.. +.+. ...|.++++.-...|.-+...++|+++.+.. -....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 3455666666666666666666666665542 2111 2345555555555555555566666665531 112345
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCC-ChhhHHHHHHHHHh
Q 044770 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGN-NWSTLDVLIILYGY 247 (464)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 247 (464)
..|...|.+.+.+++|-++|+.|.+. +.-....|...+..+.+.++.+.|..++.+..+.-.+- ......
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Is-------- 1604 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFIS-------- 1604 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHH--------
Confidence 55666666666666666666666543 12244555555666666666666666666555431110 112222
Q ss_pred hcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHH
Q 044770 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327 (464)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 327 (464)
-.+..-.+.|+.+++..+|+..... .+.-...|+..|+.-.++|+.+.+..+|
T Consensus 1605 --------------------------kfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1605 --------------------------KFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred --------------------------HHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHH
Confidence 3333344555555555555555542 2223345666666656666666666666
Q ss_pred HHHHhCCCCccH--HHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 328 KEMSMNGCKPNA--ITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 328 ~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
++....++.|-. ..|...+..=-..|+-+.+..+=.++
T Consensus 1658 eRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1658 ERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 666555555432 33444444333445444444333333
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9e-06 Score=68.63 Aligned_cols=310 Identities=8% Similarity=-0.018 Sum_probs=158.1
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHH---HHHHHHhhcChHHHHHHhhhcCCCCCchh-HHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSY---LLEFTIKNHGISQGEKLFCCIPKDYQNEL-LYNN 100 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~ 100 (464)
+..-...+-..+...|++..|+.-|...+. . |+..|.+ -...|...|+...|+.-|+++.+..||-. +--.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve-~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE-G----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc-C----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 334445566677777777777777777665 1 2233333 33466667777777777776666555532 2222
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCc--hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 044770 101 LVIACLDKGVIKLSLEYMKKMRVLGHSIS--YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND 178 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (464)
-...+.+.|.++.|..-|+..++...... ...+..+.. .+++ ......+..+...
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~--------------~~e~---------~~l~~ql~s~~~~ 168 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL--------------IQEH---------WVLVQQLKSASGS 168 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh--------------HHHH---------HHHHHHHHHHhcC
Confidence 33456677777777777777776532110 111111100 0000 0001112223334
Q ss_pred CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHH
Q 044770 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW 258 (464)
Q Consensus 179 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (464)
|+...|+.....+.+.. +-|...|..-..+|...|++..|+.-++..-+. ...+..++-.+-..+...|+.+......
T Consensus 169 GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~i 246 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLKEI 246 (504)
T ss_pred CchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44444444444444432 123333444444444444444444444333322 1223333333444444444444444444
Q ss_pred HHhccCCCCchhhHHH---H---------HHHhhccCChHHHHHHHHHHHhccccCChhh---HHHHHHHHHhcCChhHH
Q 044770 259 ATVQELPNVRSKSYVL---A---------IEAFGRIAQVSRAEELWLEMQSVKQLKATEQ---YNSVISVYCKNGFIDKA 323 (464)
Q Consensus 259 ~~~~~~~~~~~~~~~~---l---------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a 323 (464)
++..+..+.....|.. | +......++|.++.+-.+...+......... +..+-.++...|++.+|
T Consensus 247 RECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 247 RECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred HHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 4433322222111110 0 1223445667777777777666443322222 33444566677888888
Q ss_pred HHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHhH
Q 044770 324 SGLLKEMSMNGCKPN-AITYRHLALGCFKSNLVEEGFKALELGM 366 (464)
Q Consensus 324 ~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 366 (464)
++...+.++ +.|| ..++.--..+|.-...++.|+.-|+.+.
T Consensus 327 iqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 327 IQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 888888887 5565 6677777777888888888888888873
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.8e-09 Score=57.89 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=28.6
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 376 SSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 376 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
|+.||..||++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888899999999999999999999888874
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.8e-09 Score=57.86 Aligned_cols=32 Identities=16% Similarity=0.399 Sum_probs=19.8
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 044770 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDM 191 (464)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 191 (464)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-06 Score=83.89 Aligned_cols=222 Identities=12% Similarity=0.079 Sum_probs=171.1
Q ss_pred cHhHHHHHHHHHHhcChhhHHHHHHHHHHhc-cCCCC---hhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHH
Q 044770 199 NEVSYCILATAHAVARLYTVAETYVEALEKS-MTGNN---WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVL 274 (464)
Q Consensus 199 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 274 (464)
+...|-..|......++.++|.++.++++.. +++-. ...|.++++.-...|.-+...++|+++.+...+-. +|..
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~-V~~~ 1535 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYT-VHLK 1535 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHH-HHHH
Confidence 3556777788888888888888888887654 11111 24566667776777778888888888877544333 5888
Q ss_pred HHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc---HHHHHHHHHHHHh
Q 044770 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN---AITYRHLALGCFK 351 (464)
Q Consensus 275 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~ 351 (464)
|...|.+.+.+++|.++++.|.+. .......|...+..+.++++-+.|..++.+..+. -|. .....-.++.-.+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhh
Confidence 999999999999999999999983 4457778999999999999999999999998873 444 2333444555678
Q ss_pred cCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHH--HHHHHHHHHHHc
Q 044770 352 SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF--VYNTLIKAYVKA 429 (464)
Q Consensus 352 ~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~ 429 (464)
.|+.+++..+|+..+ ...+--...|+..|+.-.+.|+.+.+..+|++....++.|--. .|.-.+..=-++
T Consensus 1613 ~GDaeRGRtlfEgll--------~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLL--------SAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred cCCchhhHHHHHHHH--------hhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhc
Confidence 899999999999885 2233345678899999999999999999999999998877544 777888877778
Q ss_pred CCC
Q 044770 430 KIN 432 (464)
Q Consensus 430 g~~ 432 (464)
|++
T Consensus 1685 Gde 1687 (1710)
T KOG1070|consen 1685 GDE 1687 (1710)
T ss_pred Cch
Confidence 875
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.2e-05 Score=66.88 Aligned_cols=378 Identities=11% Similarity=-0.024 Sum_probs=216.5
Q ss_pred HHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc-hhHHHHHHHHHHhhCcHH
Q 044770 34 NRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN-ELLYNNLVIACLDKGVIK 112 (464)
Q Consensus 34 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~ 112 (464)
.+....|+++.|+..|...+... +++...|+.-..+|++.|++++|.+=-.+-.+..|+ ...|.....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 34567889999999999888743 457788888889999999999888777666655443 678888888888899999
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHhcCC---CCcccHHHHHHHHHhCC---CCCChhhHHHHHHHHHc---------
Q 044770 113 LSLEYMKKMRVLGHSISYLVFNRLIILNSSP---GRRKTIPNILRQMKADK---VAPHVSTFHILMKIEAN--------- 177 (464)
Q Consensus 113 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~--------- 177 (464)
+|+.-|.+-++.. +.+...++.+..++... ++.-.--.++..+.... .......|..++..+-+
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999998887753 33455566666655111 00000000111100000 00001111112111110
Q ss_pred -cCChhHHHHHHHH-----HHhCC-------CCC----------------------cHhHHHHHHHHHHhcChhhHHHHH
Q 044770 178 -DHNIEGLMKVYSD-----MKRSE-------VEP----------------------NEVSYCILATAHAVARLYTVAETY 222 (464)
Q Consensus 178 -~~~~~~a~~~~~~-----m~~~~-------~~p----------------------~~~~~~~li~~~~~~~~~~~a~~~ 222 (464)
...+..+...+.. +...| ..| -..-...+.++..+..+++.|.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 0001111111100 00000 000 123355566666677777777777
Q ss_pred HHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCch-------hhHHHHHHHhhccCChHHHHHHHHHH
Q 044770 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS-------KSYVLAIEAFGRIAQVSRAEELWLEM 295 (464)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 295 (464)
+....... -+..-++....+|...|.+...........+...... ..+..+..+|.+.++++.+...|.+.
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 77666553 3444455555666666665555444443333221111 12222334556666677777777665
Q ss_pred HhccccCChhh-------------------------HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 044770 296 QSVKQLKATEQ-------------------------YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350 (464)
Q Consensus 296 ~~~~~~~~~~~-------------------------~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 350 (464)
....-.|+... ...-...+.+.|++..|+..|.+++... +-|...|..-.-+|.
T Consensus 325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYL 403 (539)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHH
Confidence 54333332211 1111345667789999999999999865 336788888888899
Q ss_pred hcCChHHHHHHHHHhHHHHhhhhhcCCCCc-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 044770 351 KSNLVEEGFKALELGMKLITTKKVRSSTPW-LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428 (464)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 428 (464)
+.|.+..|+.-.+..++ ..|+ ...|.-=..++....+++.|.+.|++..+.+ |+..-+..-+.-|..
T Consensus 404 kL~~~~~aL~Da~~~ie---------L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIE---------LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHhhHHHHHHHHHHHHh---------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 99999999888777632 2443 3445555555666678888999998888865 666655544555544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.6e-07 Score=80.11 Aligned_cols=256 Identities=10% Similarity=0.064 Sum_probs=180.4
Q ss_pred hcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHH
Q 044770 140 NSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219 (464)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 219 (464)
+.+.|++.+|.-.|+..++.. +-+...|-.|.......++-..|+..+++..+.. +-+....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 567888889998998888775 6677888888888888888888998888888763 22456677777788888888899
Q ss_pred HHHHHHHHhccCCC--------ChhhHHHHHHHHHhhcChhhHHHHHHHhcc-CC-CCchhhHHHHHHHhhccCChHHHH
Q 044770 220 ETYVEALEKSMTGN--------NWSTLDVLIILYGYLAKGKDLERIWATVQE-LP-NVRSKSYVLAIEAFGRIAQVSRAE 289 (464)
Q Consensus 220 ~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~ 289 (464)
...++.-....++- +...-.. ..+..........++|-.+.. .+ ..++.+...|...|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 98888765432110 0000000 011111223344455554444 33 378888999999999999999999
Q ss_pred HHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH-HHHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA-ITYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
..|+..... -+-|...||.|...++...+.++|+..|++.++ ++|+- .....|.-.|...|.+++|...|=.++.+
T Consensus 451 Dcf~~AL~v-~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQV-KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhc-CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999973 334788999999999999999999999999998 67764 34445666789999999999999988776
Q ss_pred HhhhhhcCCCC--cHHHHHHHHHHHHhcCChhhHHH
Q 044770 369 ITTKKVRSSTP--WLETTLSIIEIFAEKGDVGNAEN 402 (464)
Q Consensus 369 ~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~ 402 (464)
........-.| +...|..|=.++.-.++.+.+.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 54322222222 33455555555555666554433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-05 Score=66.04 Aligned_cols=296 Identities=10% Similarity=-0.009 Sum_probs=183.7
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHH-HHHHHHHccC
Q 044770 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFH-ILMKIEANDH 179 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~ 179 (464)
+...+...|++..|+.-|....+.+ +.+-.++-.-...|...|+...|+.=+...++. +||-..-. .-...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3344445555555555555554421 111111222223345555555555555555442 34422111 1123344555
Q ss_pred ChhHHHHHHHHHHhCCCC------------CcH--hHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 180 NIEGLMKVYSDMKRSEVE------------PNE--VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 180 ~~~~a~~~~~~m~~~~~~------------p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
.+++|..=|+...+.... +-. ......+..+.-.|+...|+.+...+++. .+-|...+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHH
Confidence 555555555555543210 001 11222344456688999999999998875 334667777778899
Q ss_pred HhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhh----HHH---H------HH
Q 044770 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ----YNS---V------IS 312 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~---l------i~ 312 (464)
...|++..|+.-++.+.+....++..+--+-..+...|+.+.++...++-.+.+ ||... |.. + +.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888777788778788888889999999999988888743 54322 211 1 12
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCccHHHHH---HHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc-HHHHHHHH
Q 044770 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYR---HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LETTLSII 388 (464)
Q Consensus 313 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li 388 (464)
.....++|.++++-.+...+.........|+ .+-.++...+++.+|++...++ ..+.|+ +.++.--.
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev---------L~~d~~dv~~l~dRA 348 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV---------LDIDPDDVQVLCDRA 348 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH---------HhcCchHHHHHHHHH
Confidence 3345678888888888877754332233333 3444556678999999999888 456665 77777788
Q ss_pred HHHHhcCChhhHHHHHHHHHHcC
Q 044770 389 EIFAEKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m~~~~ 411 (464)
.+|.-...+++|+.=|+...+.+
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcC
Confidence 88888888888888888877653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.6e-06 Score=68.96 Aligned_cols=281 Identities=11% Similarity=-0.018 Sum_probs=146.0
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHH-HHHHHH
Q 044770 133 FNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI-LATAHA 211 (464)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~ 211 (464)
+.+.+..+.+..++.+|++++..-.++. +.+....+.|..+|-...++..|-..|+++... .|...-|.. -.+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4444444455555666666665555443 335555555666666666666666666666544 344444332 223444
Q ss_pred hcChhhHHHHHHHHHHhccCCCChhhHHHHHH--HHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHH
Q 044770 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLII--LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289 (464)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 289 (464)
+.+.+..|+.+...|.+. ++...-..-+. .....++...+..++++.......+ +.+.......+.|+++.|.
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad--~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEAD--GQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccc--hhccchheeeccccHHHHH
Confidence 556666666666655442 11111111111 1223455555555555544322222 2444455556778888888
Q ss_pred HHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-------------ccHHH--------HHHHHH-
Q 044770 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK-------------PNAIT--------YRHLAL- 347 (464)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-------------p~~~~--------~~~ll~- 347 (464)
+-|+...+-+.-.....||..+. ..+.|+++.|+++..+++++|++ ||..+ -+.++.
T Consensus 165 qkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 88877766544444556665443 44557778888888777776643 22111 122222
Q ss_pred ------HHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHH
Q 044770 348 ------GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421 (464)
Q Consensus 348 ------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 421 (464)
.+.+.++++.|.+.+-.|- .......|+.|...+.-. -..|++.+..+-+.-+...+. -...||..
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmP------PRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFAN 315 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMP------PRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFAN 315 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCC------CcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHH
Confidence 3456788888888777772 222333344443322211 123445555444444444432 12347777
Q ss_pred HHHHHHHcC
Q 044770 422 LIKAYVKAK 430 (464)
Q Consensus 422 li~~~~~~g 430 (464)
++--||+..
T Consensus 316 lLllyCKNe 324 (459)
T KOG4340|consen 316 LLLLYCKNE 324 (459)
T ss_pred HHHHHhhhH
Confidence 777777765
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00017 Score=64.98 Aligned_cols=148 Identities=15% Similarity=0.142 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHH
Q 044770 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383 (464)
Q Consensus 305 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~ 383 (464)
.+|...+..-.+..-+..|..+|.+..+.+..+ +...++.++.-++ +++.+.|.++|+.-+ ++.+-.|- -
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGL------kkf~d~p~--y 437 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGL------KKFGDSPE--Y 437 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHH------HhcCCChH--H
Confidence 356667777777777888888888888877777 5566666666544 477788888888765 33444433 2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcH--HHHHHHHHHHHHcCCC--hhHHHHHHHhC---CCCCCHHHHHHHH
Q 044770 384 TLSIIEIFAEKGDVGNAENLFEELKKANYTKYT--FVYNTLIKAYVKAKIN--DPNLLRRMILG---GARPDAETYSLLK 456 (464)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~--a~~~~~~m~~~---~~~p~~~t~~~L~ 456 (464)
-...++.+...++-..|..+|++....++.|+. ..|..+|.-=+.-|+- +.++-+++... ...|.-.+-..++
T Consensus 438 v~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v 517 (656)
T KOG1914|consen 438 VLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFV 517 (656)
T ss_pred HHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHH
Confidence 346777778888888888888888887666554 4888888888888874 56777766653 1223334444555
Q ss_pred HHHHh
Q 044770 457 LAEQF 461 (464)
Q Consensus 457 ~~~~~ 461 (464)
.-+++
T Consensus 518 ~RY~~ 522 (656)
T KOG1914|consen 518 DRYGI 522 (656)
T ss_pred HHHhh
Confidence 44443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00025 Score=68.71 Aligned_cols=373 Identities=10% Similarity=0.085 Sum_probs=211.4
Q ss_pred CcchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHc----------CCCCCCchhHHHHHHHHHhhcCh
Q 044770 9 PVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRE----------RPYRPKELDYSYLLEFTIKNHGI 78 (464)
Q Consensus 9 ~~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~ 78 (464)
...+.++.|...+++-+-.....+...|..+--.+.-+++|+....- -++.-|+.+.-..+.+.++.|++
T Consensus 661 ~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~Qi 740 (1666)
T KOG0985|consen 661 DSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQI 740 (1666)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccH
Confidence 34556667777777777776666666666665556666666654331 12445566666677777777777
Q ss_pred HHHHHHhhhc-----------------CCCCC------------chhH--------------------------------
Q 044770 79 SQGEKLFCCI-----------------PKDYQ------------NELL-------------------------------- 97 (464)
Q Consensus 79 ~~a~~~~~~~-----------------~~~~~------------~~~~-------------------------------- 97 (464)
.+..++-++- ....| +...
T Consensus 741 kEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD 820 (1666)
T KOG0985|consen 741 KEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLD 820 (1666)
T ss_pred HHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhc
Confidence 7766665431 00000 0000
Q ss_pred --------------------HHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHH-------
Q 044770 98 --------------------YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP------- 150 (464)
Q Consensus 98 --------------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~------- 150 (464)
-+-|..-+-+.++..--+..++...+.|.. |..++|+|...|..+++-.+-.
T Consensus 821 ~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yY 899 (1666)
T KOG0985|consen 821 VDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYY 899 (1666)
T ss_pred CCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcc
Confidence 011111233444555556667777777754 8889999998888766532211
Q ss_pred ---HHHHHHHhCCC----------CCCh---------hhHHHHHHHHHccCChhHHHH-----------HHHHHHhCCC-
Q 044770 151 ---NILRQMKADKV----------APHV---------STFHILMKIEANDHNIEGLMK-----------VYSDMKRSEV- 196 (464)
Q Consensus 151 ---~~~~~~~~~~~----------~~~~---------~~~~~l~~~~~~~~~~~~a~~-----------~~~~m~~~~~- 196 (464)
.+=+-..++.. ..|. ..|....+.+.+..+.+--.+ +.++..+.++
T Consensus 900 Ds~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~ 979 (1666)
T KOG0985|consen 900 DSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALP 979 (1666)
T ss_pred hhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCC
Confidence 11111111110 1111 123334444445555443332 3344444332
Q ss_pred -CCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhcc--CCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHH
Q 044770 197 -EPNEVSYCILATAHAVARLYTVAETYVEALEKSM--TGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273 (464)
Q Consensus 197 -~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (464)
..|+...+..++++...+-+.+-+++++++.-.. +..+...-+.++-. +-..+...+.++.+++..-..++.
T Consensus 980 E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdnyDa~~i---- 1054 (1666)
T KOG0985|consen 980 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNYDAPDI---- 1054 (1666)
T ss_pred ccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccCCchhH----
Confidence 2355556677788888888888888888875432 12222222333322 223344445555555544222221
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhcc---------------------ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVK---------------------QLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
.......+-+++|..+|++....+ -.-.+..|+.+..+-.+.|...+|++-|-+.
T Consensus 1055 --a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1055 --AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred --HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 112222333344444433221100 0013447888999888889998888877543
Q ss_pred CCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 044770 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404 (464)
Q Consensus 333 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (464)
-|+..|..++..+.+.|.+++-..++..+ .+..-.|.+.+ .||-+|++.++..+..+++
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~Ma-------Rkk~~E~~id~--eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMA-------RKKVREPYIDS--ELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHH-------HHhhcCccchH--HHHHHHHHhchHHHHHHHh
Confidence 36778999999999999999999999988 66777887776 8999999999988866654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.8e-06 Score=75.76 Aligned_cols=250 Identities=9% Similarity=-0.033 Sum_probs=186.2
Q ss_pred HHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH
Q 044770 104 ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183 (464)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 183 (464)
-+.+.|++.+|.-.|+...+.+ +-+...|..|.......++-..|+..+.+..+.. +-|....-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3567899999999999999875 4578999999999999999999999999998875 5667777888888999999999
Q ss_pred HHHHHHHHHhCCCC--------CcHhHHHHHHHHHHhcChhhHHHHHHHH-HHhccCCCChhhHHHHHHHHHhhcChhhH
Q 044770 184 LMKVYSDMKRSEVE--------PNEVSYCILATAHAVARLYTVAETYVEA-LEKSMTGNNWSTLDVLIILYGYLAKGKDL 254 (464)
Q Consensus 184 a~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (464)
|++.++.......+ ++...-.. ..+..........++|-+ ....+..+|+.+...|.-.|...|+++.+
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999988654211 00000000 111222233344444444 45555568888899999999999999999
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHh-
Q 044770 255 ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGLLKEMSM- 332 (464)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~- 332 (464)
...|+......+.+...||.|...++...+.++|...|.+..+. .|+ +.....|.-+|...|.+++|...|-..+.
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999984 454 44566678889999999999998876543
Q ss_pred --CC------CCccHHHHHHHHHHHHhcCChHHHH
Q 044770 333 --NG------CKPNAITYRHLALGCFKSNLVEEGF 359 (464)
Q Consensus 333 --~g------~~p~~~~~~~ll~~~~~~~~~~~a~ 359 (464)
.+ ..++...|.+|=.++.-.++.+.+.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 21 1223345555555555555555443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00015 Score=68.66 Aligned_cols=366 Identities=10% Similarity=0.106 Sum_probs=200.7
Q ss_pred HHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-----------CCchhHHHHHHHH
Q 044770 36 LRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-----------YQNELLYNNLVIA 104 (464)
Q Consensus 36 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~li~~ 104 (464)
|..-|+.+.|.+-.+.+. +..+|..|..+|.+..++|-|.-.+..|... .++ ..=....-.
T Consensus 738 yvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 445677777777666554 3468889999999998888888887777553 111 111222233
Q ss_pred HHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHH
Q 044770 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGL 184 (464)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (464)
....|..++|..+|.+-++.+ .|=..|-..|.|++|.++-+.--+.. =..||.....-+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHH
Confidence 456788888888888777642 34445667788888887765432211 123454555556667778888
Q ss_pred HHHHHHHHh----------CC---------CCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 185 MKVYSDMKR----------SE---------VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 185 ~~~~~~m~~----------~~---------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
+++|++... .. -..|...|.......-..|+.+.|+.+|....+ |-++++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 877765321 10 012333444444444556666677666665543 33455556
Q ss_pred HhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHH
Q 044770 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 325 (464)
|-.|+.++|-++-++- .+....-.|.+.|-..|++.+|..+|.+... +...|..|-.+ ++++-+.
T Consensus 949 C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEn-d~~d~L~ 1013 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKEN-DMKDRLA 1013 (1416)
T ss_pred eeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhc-CHHHHHH
Confidence 6667777766655432 2222344677777788888888888776653 33333332222 2222111
Q ss_pred HHHHH-------------HhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh-----HHHHhhhhhcCCCCcHHHHHHH
Q 044770 326 LLKEM-------------SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG-----MKLITTKKVRSSTPWLETTLSI 387 (464)
Q Consensus 326 ~~~~m-------------~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~p~~~~~~~l 387 (464)
-+.-| .+.|.. +...+..|-+.|.+.+|+++--.- +++.. .+..-..|+...+.-
T Consensus 1014 nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa--~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA--KDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH--HhcCCCCCHHHHHHH
Confidence 11111 111111 112233455556655554432111 11111 233334456666667
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCChhHHHHHHHh--CCCCCCHHHH-HHHHHHHHh
Q 044770 388 IEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNLLRRMIL--GGARPDAETY-SLLKLAEQF 461 (464)
Q Consensus 388 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~a~~~~~~m~~--~~~~p~~~t~-~~L~~~~~~ 461 (464)
.+.++...++++|..++-..++ |...+.-|...|-...+-|.+|.. +.-.|+..+- .+|.+...+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~ 1154 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAEL 1154 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHH
Confidence 7777888888888888766655 445555555555444444444442 2234555555 455544433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-05 Score=70.17 Aligned_cols=201 Identities=8% Similarity=-0.002 Sum_probs=91.9
Q ss_pred cChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhC-cHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCC--cccHHH
Q 044770 76 HGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKG-VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR--RKTIPN 151 (464)
Q Consensus 76 g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~ 151 (464)
++.++|+.+.+++....| +..+|+.....+...| ++++++..++++.+.+ +-+..+|+.....+.+.|+ .+++..
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 344455555544444322 2334444444444444 3566666666665543 2233344433333333333 144555
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhc---Chh----hHHHHHHH
Q 044770 152 ILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA---RLY----TVAETYVE 224 (464)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~----~~a~~~~~ 224 (464)
+++.+.+.. +-|..+|+....++...|+++++++.++++.+.++. |...|+.....+.+. |.. ++.+.+..
T Consensus 130 ~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 130 FTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 565555544 445556666666666666666666666666655432 444555444443332 111 23444444
Q ss_pred HHHhccCCCChhhHHHHHHHHHhh----cChhhHHHHHHHhccCCCCchhhHHHHHHHhh
Q 044770 225 ALEKSMTGNNWSTLDVLIILYGYL----AKGKDLERIWATVQELPNVRSKSYVLAIEAFG 280 (464)
Q Consensus 225 ~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (464)
++... .+-|...|+-+...+... +...++...+..+....+.+......|++.|+
T Consensus 208 ~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 208 DAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 44333 223444554444444442 22233444444433333333333444444444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.6e-06 Score=75.28 Aligned_cols=221 Identities=10% Similarity=-0.027 Sum_probs=121.0
Q ss_pred CCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 044770 59 RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLII 138 (464)
Q Consensus 59 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 138 (464)
+|-...-..+...+.+.|=...|..+|+++. .|.-.|.+|+..|+..+|..+..+..+ -+||...|..+.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 3333444455556666666666666666543 355566666666666666666655555 2456666666666
Q ss_pred HhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhH
Q 044770 139 LNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTV 218 (464)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 218 (464)
......-+++|.++++..... .-..+.......+++.++.+.|+.-.+.. +.-..+|-..-.+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHH
Confidence 555555555666555544321 11111122223566666666665544332 2234455555555556666666
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 219 AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
|.+.|...... -+.+...||.+-.+|.+.++..+|...+.+..+-...+...|...+-...+.|.+++|.+.+.++.+
T Consensus 538 av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 538 AVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 66666655442 2334456666666666666666666666666554444444555555566666666666666665543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5e-05 Score=70.77 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=53.5
Q ss_pred HHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHH
Q 044770 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288 (464)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 288 (464)
+....++|.+|+.+++.+++.... ..-|..+.+.|...|+++.|+++|-... .++-.|..|.+.|+|+.|
T Consensus 741 aai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHH
Confidence 344455666666666655554321 2334455556666666666666655431 144556666666666666
Q ss_pred HHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHH
Q 044770 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327 (464)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 327 (464)
.++-++... ....+..|-+-..-+-.+|++.+|.++|
T Consensus 811 ~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 811 FKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 655444332 2223333443334444444444444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.2e-06 Score=70.12 Aligned_cols=186 Identities=13% Similarity=-0.037 Sum_probs=105.6
Q ss_pred cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCCh---hhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchh---hH
Q 044770 199 NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNW---STLDVLIILYGYLAKGKDLERIWATVQELPNVRSK---SY 272 (464)
Q Consensus 199 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~ 272 (464)
....+..+...+.+.|++++|...++++..... .+. .++..+..++...|+++.|...++.+.+..+.+.. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 455666677777888888888888888766432 121 34566667777777777777777777663333322 34
Q ss_pred HHHHHHhhcc--------CChHHHHHHHHHHHhccccCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHH
Q 044770 273 VLAIEAFGRI--------AQVSRAEELWLEMQSVKQLKAT-EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343 (464)
Q Consensus 273 ~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 343 (464)
..+..++... |+++.|.+.|+.+.+.. |+. ..+..+... .. .... . . ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~~~~-------~------~-~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---LRNR-------L------A-GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---HHHH-------H------H-HHHH
Confidence 4444444433 55666666666666532 221 122111110 00 0000 0 0 0011
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 344 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
.+...+.+.|++++|...++.+++. ..+.......+..+..++.+.|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVEN-----YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHH-----CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445567778888888888887531 1112223456677888888888888888887777654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.5e-06 Score=78.06 Aligned_cols=215 Identities=14% Similarity=0.086 Sum_probs=139.9
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhc
Q 044770 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213 (464)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 213 (464)
..+...+...|-...|..+|+++. .|.-.+.+|...|+..+|..+..+..++ +||...|..+.......
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 344455666666667777766554 3555667777777777777777766663 66777777766666666
Q ss_pred ChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHH
Q 044770 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293 (464)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 293 (464)
.-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+..+....+|-.+..+..+.++++.|.+.|.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 6666776666554222 111111222335667777777777666666666677777777777777777777777
Q ss_pred HHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 294 EMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 294 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
.-.. +.+-+...||.+-.+|.+.++-.+|...+.+..+-.. -+...|...+....+.|.+++|++.+..+.++
T Consensus 544 rcvt-L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 544 RCVT-LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHhh-cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 7776 3334566778888888887777778777777777552 24445555566667777777777777777654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.7e-05 Score=66.85 Aligned_cols=215 Identities=7% Similarity=-0.018 Sum_probs=141.1
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC-CcccHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 044770 97 LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG-RRKTIPNILRQMKADKVAPHVSTFHILMKIE 175 (464)
Q Consensus 97 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (464)
++..+-..+...++.++|+.+.+++++.. +-+..+|+..-.++...| ++++++..++.+.+.. +.+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 34444455566788899999999998853 224455665555566666 5789999999988765 55666777665555
Q ss_pred HccCCh--hHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhh---cC
Q 044770 176 ANDHNI--EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL---AK 250 (464)
Q Consensus 176 ~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 250 (464)
.+.|.. ++++.+++++.+.. +-|..+|+....++.+.|+++++++.++++.+.++. +...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 566653 67888888888765 337788888888888889999999999999887543 455565555554443 22
Q ss_pred h----hhHHHHHHHhccCCCCchhhHHHHHHHhhcc----CChHHHHHHHHHHHhccccCChhhHHHHHHHHHh
Q 044770 251 G----KDLERIWATVQELPNVRSKSYVLAIEAFGRI----AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316 (464)
Q Consensus 251 ~----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 316 (464)
. +.............+.+...|+.+...+... +...+|.+.+.+..+.+ +.++.....|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 2 3445555555555556666677766666652 33455666666655522 2345556666666654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-05 Score=65.36 Aligned_cols=159 Identities=11% Similarity=-0.010 Sum_probs=111.5
Q ss_pred HHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcC
Q 044770 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318 (464)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 318 (464)
..+-..+...|+-+....+........+.+......++....+.|++..|...|.+... .-++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCCChhhhhHHHHHHHHcc
Confidence 44555666667766666666666666666665566677777888888888888888877 55667888888888888888
Q ss_pred ChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCCh
Q 044770 319 FIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397 (464)
Q Consensus 319 ~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 397 (464)
+++.|..-|.+..+. .| ++..++.+.-.+.-.|+.+.|..++.... ..-.-+..+-..|.......|++
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~--------l~~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAY--------LSPAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH--------hCCCCchHHHHHHHHHHhhcCCh
Confidence 888888888887773 33 34556677777777788888888887772 12222445556677777788888
Q ss_pred hhHHHHHHHHH
Q 044770 398 GNAENLFEELK 408 (464)
Q Consensus 398 ~~A~~~~~~m~ 408 (464)
.+|..+...-.
T Consensus 219 ~~A~~i~~~e~ 229 (257)
T COG5010 219 REAEDIAVQEL 229 (257)
T ss_pred HHHHhhccccc
Confidence 88887765433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-05 Score=64.98 Aligned_cols=160 Identities=13% Similarity=0.025 Sum_probs=116.5
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhc
Q 044770 134 NRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213 (464)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 213 (464)
..+-..+...|+-+....+........ +.|....+.++....+.|++..|...|++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 555566777777777777776654322 4455566667888888888888888888886543 66788888888888888
Q ss_pred ChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHH
Q 044770 214 RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293 (464)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 293 (464)
|+++.|..-|.+..+. .+-++...+.+.-.+.-.|+.+.|..++......+..+..+-..+.......|+++.|.++..
T Consensus 148 Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888888888887775 334556667777777777888888887777777777777677777777777788777777665
Q ss_pred HHH
Q 044770 294 EMQ 296 (464)
Q Consensus 294 ~~~ 296 (464)
.-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.4e-05 Score=70.12 Aligned_cols=326 Identities=13% Similarity=0.120 Sum_probs=192.7
Q ss_pred hcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHH
Q 044770 20 EGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYN 99 (464)
Q Consensus 20 ~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 99 (464)
.|.|.-...-.+.++++...|+-+.|-++-+ +.-.--+.+..|.+.|.+-.|.+....-.....+.....
T Consensus 583 ~~~p~~eklk~sy~q~l~dt~qd~ka~elk~----------sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~ 652 (1636)
T KOG3616|consen 583 KGHPALEKLKRSYLQALMDTGQDEKAAELKE----------SDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILE 652 (1636)
T ss_pred cCChHHHHHHHHHHHHHHhcCchhhhhhhcc----------ccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHH
Confidence 3555555555566777777777666655321 111223556788888888777665432111112333333
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHHc---------C-------------CCCchhhHH-HHHHHhcCCCCcccHHHHHHHH
Q 044770 100 NLVIACLDKGVIKLSLEYMKKMRVL---------G-------------HSISYLVFN-RLIILNSSPGRRKTIPNILRQM 156 (464)
Q Consensus 100 ~li~~~~~~~~~~~a~~~~~~m~~~---------~-------------~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~ 156 (464)
.+..++.+..-+++|-.+|+++..- | ++..+.+.. .-..-+...|+++.|..-|-+.
T Consensus 653 ~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 653 HIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred HHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 3334444433344444444333210 0 000011000 0011112223333333333221
Q ss_pred HhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChh
Q 044770 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236 (464)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (464)
. ..-..+.+......|.+|+.+++.+..+.. -.--|..+...|+..|+++.|.++|-+. .
T Consensus 733 ~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~ 792 (1636)
T KOG3616|consen 733 N---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------D 792 (1636)
T ss_pred h---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------c
Confidence 1 112234556677889999999988876532 2334677788899999999999988653 2
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHh
Q 044770 237 TLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316 (464)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 316 (464)
.++-.+..|.+.|+++.|.++-..... +......|.+-..-+-+.|++.+|.+++-.+.. |+ ..|..|-+
T Consensus 793 ~~~dai~my~k~~kw~da~kla~e~~~-~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk 862 (1636)
T KOG3616|consen 793 LFKDAIDMYGKAGKWEDAFKLAEECHG-PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDK 862 (1636)
T ss_pred hhHHHHHHHhccccHHHHHHHHHHhcC-chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHh
Confidence 355677889999999999887666543 333344566666777788999999988866554 43 36778889
Q ss_pred cCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCC
Q 044770 317 NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396 (464)
Q Consensus 317 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 396 (464)
.|..+..+++..+-.... -..|-..+..-+...|++..|..-|-++ . -|.+-+++|-..+-
T Consensus 863 ~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea---------~-------d~kaavnmyk~s~l 923 (1636)
T KOG3616|consen 863 HGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEA---------G-------DFKAAVNMYKASEL 923 (1636)
T ss_pred hCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhh---------h-------hHHHHHHHhhhhhh
Confidence 999998888877643211 1345556667778889999988877665 1 23456777877888
Q ss_pred hhhHHHHH
Q 044770 397 VGNAENLF 404 (464)
Q Consensus 397 ~~~A~~~~ 404 (464)
|++|-++-
T Consensus 924 w~dayria 931 (1636)
T KOG3616|consen 924 WEDAYRIA 931 (1636)
T ss_pred HHHHHHHH
Confidence 88877764
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-05 Score=68.78 Aligned_cols=64 Identities=5% Similarity=-0.130 Sum_probs=34.3
Q ss_pred hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCCh---hhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 044770 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV---STFHILMKIEANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 194 (464)
...+..+...+...|+++.|...|+++.... +.+. ..+..+..++.+.|++++|...++++.+.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3444555555556666666666666655432 1111 23444555566666666666666666544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.4e-05 Score=66.91 Aligned_cols=109 Identities=13% Similarity=0.068 Sum_probs=48.2
Q ss_pred CCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHH
Q 044770 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAE 220 (464)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~ 220 (464)
..|++++|+..++.+...- +-|...+....+.+.+.++.++|.+.++.+... .|+ ....-.+..++.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 3444555555555544331 222333333344445555555555555554443 333 223333444444555555555
Q ss_pred HHHHHHHhccCCCChhhHHHHHHHHHhhcChhhH
Q 044770 221 TYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDL 254 (464)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (464)
.+++..... .+.|+..|..|..+|...|+..++
T Consensus 395 ~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 395 RILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHH
Confidence 554444433 333444444444444444444443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00085 Score=63.81 Aligned_cols=171 Identities=12% Similarity=0.047 Sum_probs=108.7
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCc
Q 044770 31 HSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGV 110 (464)
Q Consensus 31 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 110 (464)
.+.-.....|-+++|+.+|.+..+ |..|=..|...|.+++|.++-+.-... .=..+|.....-+-..++
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRi-HLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRI-HLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccce-ehhhhHHHHHHHHHhhcc
Confidence 334444567788888888887765 234445677788888888877654332 122455555555666777
Q ss_pred HHHHHHHHHHHH----------HcC---------CCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHH
Q 044770 111 IKLSLEYMKKMR----------VLG---------HSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171 (464)
Q Consensus 111 ~~~a~~~~~~m~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (464)
.+.|++.|++.- ... -..|...|.--...+-..|+.+.|+.+|....+ |-++
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~ 944 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSM 944 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhh
Confidence 777777776432 111 011333444444445566777777777766554 4456
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHH
Q 044770 172 MKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227 (464)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 227 (464)
++..|-.|+.++|-.+-++- -|......+.+.|-..|++.+|..+|.+.+
T Consensus 945 VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66667777777777666543 266677778888888999999998887764
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-05 Score=75.79 Aligned_cols=129 Identities=12% Similarity=0.033 Sum_probs=76.5
Q ss_pred cChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCch-------
Q 044770 24 VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNE------- 95 (464)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------- 95 (464)
.+...+..++..+...+++++|.++.+...+..+ -....|-.+...+...++.+++..+ .+... ..+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P--~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK--KSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--cceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 3455677889999899999999999998877432 2333444444467777777666555 32222 1111
Q ss_pred ------------hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHh
Q 044770 96 ------------LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA 158 (464)
Q Consensus 96 ------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (464)
.++..+..+|-+.|+.++|..+++++++.. +-|+.+.|.+...|... +.++|.+++.+...
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 334444555555566666666666666554 33455555555555555 55555555555443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00013 Score=64.97 Aligned_cols=147 Identities=12% Similarity=-0.011 Sum_probs=108.3
Q ss_pred HHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCC-hhhHHHHHHHHHhcCChhH
Q 044770 244 LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDK 322 (464)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~ 322 (464)
.+...|+.+.|+..++.+....+.+..-+....+.+.+.++..+|.+.++.+.... |+ ...+-.+..+|.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHH
Confidence 44567788888888888877777777677777788888888888888888888743 33 5566667788888888888
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 044770 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402 (464)
Q Consensus 323 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 402 (464)
|+.++++.... .+-|+..|..|.++|...|+..++.....+. |...|+++.|..
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~-------------------------~~~~G~~~~A~~ 446 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG-------------------------YALAGRLEQAII 446 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH-------------------------HHhCCCHHHHHH
Confidence 88888887765 3447788888888888888887776544443 666788888888
Q ss_pred HHHHHHHcCCCCcHHHH
Q 044770 403 LFEELKKANYTKYTFVY 419 (464)
Q Consensus 403 ~~~~m~~~~~~p~~~~~ 419 (464)
.+....+.. +++..+|
T Consensus 447 ~l~~A~~~~-~~~~~~~ 462 (484)
T COG4783 447 FLMRASQQV-KLGFPDW 462 (484)
T ss_pred HHHHHHHhc-cCCcHHH
Confidence 887777652 3444444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.7e-05 Score=60.41 Aligned_cols=147 Identities=13% Similarity=0.028 Sum_probs=93.1
Q ss_pred HHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHh----hccCC
Q 044770 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF----GRIAQ 284 (464)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~ 284 (464)
.|++.+++++|++..... .+......=+..+.+..+.+.|.+.++.|.......+ .+.|..++ ...+.
T Consensus 117 i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t--LtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT--LTQLAQAWVKLATGGEK 188 (299)
T ss_pred HhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH--HHHHHHHHHHHhccchh
Confidence 355556666665555431 1112222223344455555566665555555333222 33333333 34567
Q ss_pred hHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHH-HHHHHH
Q 044770 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE-GFKALE 363 (464)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~ 363 (464)
+.+|.-+|++|.+ ..+|++.+.+....++...|++++|..++++...+... ++.+...++..-...|...+ ..+.+.
T Consensus 189 ~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 8899999999998 56788889999999999999999999999999987544 66777777766666666544 344555
Q ss_pred Hh
Q 044770 364 LG 365 (464)
Q Consensus 364 ~~ 365 (464)
+.
T Consensus 267 QL 268 (299)
T KOG3081|consen 267 QL 268 (299)
T ss_pred HH
Confidence 55
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-05 Score=64.81 Aligned_cols=118 Identities=8% Similarity=-0.042 Sum_probs=53.4
Q ss_pred CcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHH-HccCC--hhHHH
Q 044770 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE-ANDHN--IEGLM 185 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~ 185 (464)
++.++++..++...+.+ +.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 33444444444444432 3344445555555555555555555555544433 23344444444432 33333 24555
Q ss_pred HHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhc
Q 044770 186 KVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 186 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 229 (464)
+++++..+.... +...+..+...+.+.|++++|+..|+++.+.
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 555555444211 3344444444455555555555555555444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00016 Score=71.26 Aligned_cols=221 Identities=13% Similarity=0.017 Sum_probs=132.8
Q ss_pred CchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCch-hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 044770 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE-LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL 139 (464)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 139 (464)
....+..|+..+...+++++|.++.+......|+. ..|-.+...+.+.++.+++..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 44567777778878888888888887666655543 3333333455555654444433 23334
Q ss_pred hcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHH
Q 044770 140 NSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219 (464)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 219 (464)
.....++.-+..+.+.|.+. .-+...+..+..+|-+.|+.++|..+|+++.+.. +-|....|.+...|... +.++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 44444554444455555553 3344567778888888899999999998888876 34677788888888888 88888
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcc
Q 044770 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK 299 (464)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 299 (464)
..++.+.... +....++..+..+|..+....+.+...+..+.+.....- +
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~---------------~ 218 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR---------------E 218 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh---------------c
Confidence 8888877554 445556777777777766654444333322222111110 1
Q ss_pred ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 300 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
...-+.++-.+-..|-..+++++++.+++...+
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 111222344444555555566666666666655
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.5e-05 Score=74.04 Aligned_cols=177 Identities=10% Similarity=-0.063 Sum_probs=128.3
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS-YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (464)
+...+..|.......|.+++|..+++...+. .|| ......+...+.+.+++++|...+++..+.. +-+......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 5788888999999999999999999999885 344 5667778888999999999999999998875 55566677788
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChh
Q 044770 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252 (464)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (464)
.++.+.|++++|..+|++....+ +-+..++..+..++...|+.++|...|+...+. ..+....|+..+ ++..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHH
Confidence 88899999999999999998743 234778888888899999999999999988776 334444444332 2333
Q ss_pred hHHHHHHHhcc-----CCCCchhhHHHHHHHhhc
Q 044770 253 DLERIWATVQE-----LPNVRSKSYVLAIEAFGR 281 (464)
Q Consensus 253 ~a~~~~~~~~~-----~~~~~~~~~~~l~~~~~~ 281 (464)
.-...++.+.- +.+....+....|.-|.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 34445555443 222233344455555544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00098 Score=60.24 Aligned_cols=334 Identities=12% Similarity=0.010 Sum_probs=185.7
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCc-hhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE-LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLV 102 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li 102 (464)
+--.|..-..++...|++++|++=-...++ ..|+. ..|+....++.-.|++++|+.-|.+-.+..| +...++-+.
T Consensus 35 nhvlySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~ 111 (539)
T KOG0548|consen 35 NHVLYSNRSAAYASLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLA 111 (539)
T ss_pred ccchhcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHH
Confidence 444556677788899999999987777766 34553 4789999999999999999999999877744 566777777
Q ss_pred HHHHhhCcHHHH---HHHHHHHHHc---CCCCchhhHHHHHHHhcCC-------CCcccHHHHHHHHH--------hCC-
Q 044770 103 IACLDKGVIKLS---LEYMKKMRVL---GHSISYLVFNRLIILNSSP-------GRRKTIPNILRQMK--------ADK- 160 (464)
Q Consensus 103 ~~~~~~~~~~~a---~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~-------~~~~~a~~~~~~~~--------~~~- 160 (464)
.++......... -.++..+... ........|..++...-+. .+.+......-.+. ..|
T Consensus 112 ~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~ 191 (539)
T KOG0548|consen 112 QAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGI 191 (539)
T ss_pred HhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccccccccc
Confidence 766221000000 0000000000 0000011111111111100 00000000000000 000
Q ss_pred ------CCC----------------------ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHh
Q 044770 161 ------VAP----------------------HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV 212 (464)
Q Consensus 161 ------~~~----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 212 (464)
..| -..-...+.++.-+..+++.|.+-+....+.. -+..-++....+|..
T Consensus 192 ~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e 269 (539)
T KOG0548|consen 192 EILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLE 269 (539)
T ss_pred ccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHh
Confidence 000 01124456666666667777777776666542 233333444445666
Q ss_pred cChhhHHHHHHHHHHhccCCCC------hhhHHHHHHHHHhhcChhhHHHHHHHhccCC-CCc-----------------
Q 044770 213 ARLYTVAETYVEALEKSMTGNN------WSTLDVLIILYGYLAKGKDLERIWATVQELP-NVR----------------- 268 (464)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~----------------- 268 (464)
.|.+......-....+.|...- ...+..+..++.+.++++.+...+....... .++
T Consensus 270 ~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~ 349 (539)
T KOG0548|consen 270 RGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAER 349 (539)
T ss_pred ccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 6655555444444433321110 1111223334455555666666655543311 111
Q ss_pred --------hhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-H
Q 044770 269 --------SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN-A 339 (464)
Q Consensus 269 --------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~ 339 (464)
..-...-...+.+.|++..|.+.|.++.+.. +-|...|..-..+|.+.|.+..|+.=.+..++. .|+ .
T Consensus 350 ~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~ 426 (539)
T KOG0548|consen 350 KAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFI 426 (539)
T ss_pred HHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHH
Confidence 1111122566788999999999999999855 568899999999999999999999988877774 443 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhH
Q 044770 340 ITYRHLALGCFKSNLVEEGFKALELGM 366 (464)
Q Consensus 340 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 366 (464)
..|..=..++....+++.|.+.|++.+
T Consensus 427 kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 427 KAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666778888998888883
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0011 Score=60.02 Aligned_cols=376 Identities=11% Similarity=0.043 Sum_probs=189.8
Q ss_pred cCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHH
Q 044770 21 GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNN 100 (464)
Q Consensus 21 g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 100 (464)
..|.|.+++..+++-+..+ ..+++.+.++++... ++.+...|..-+..-....+++...++|.+.....-+...|..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~l 91 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKL 91 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHH
Confidence 4567888888888887776 889999999999864 4556778888888888899999999999887765556777777
Q ss_pred HHHHHHhh-CcHHH----HHHHHHHHH-HcCCCCc-hhhHHHHHHHhc---------CCCCcccHHHHHHHHHhCCCCCC
Q 044770 101 LVIACLDK-GVIKL----SLEYMKKMR-VLGHSIS-YLVFNRLIILNS---------SPGRRKTIPNILRQMKADKVAPH 164 (464)
Q Consensus 101 li~~~~~~-~~~~~----a~~~~~~m~-~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~ 164 (464)
-++--.+. |+... ..+.|+-.. +.|+.+- -..|+..+..+- ...+++.+.+++++++...+.-=
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 77644332 22222 223333322 3343322 233444443322 23345566777777765321111
Q ss_pred hhhHHH------HHHH-------HHccCChhHHHHHHHHHHh--CCCCCcHhH---------------HHHHHHH-----
Q 044770 165 VSTFHI------LMKI-------EANDHNIEGLMKVYSDMKR--SEVEPNEVS---------------YCILATA----- 209 (464)
Q Consensus 165 ~~~~~~------l~~~-------~~~~~~~~~a~~~~~~m~~--~~~~p~~~~---------------~~~li~~----- 209 (464)
...|+- =|+. --+...+-.|.++++++.. +|......+ |-.+|.-
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 111211 1111 0112334455555555532 221111111 2111111
Q ss_pred -----------------------HH--------------hcCh--------------hhHHHHHHHHHHhccCCCChhhH
Q 044770 210 -----------------------HA--------------VARL--------------YTVAETYVEALEKSMTGNNWSTL 238 (464)
Q Consensus 210 -----------------------~~--------------~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~ 238 (464)
+. ..++ .+++..+++.....-..-+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 11112222211111111111111
Q ss_pred HHHHHHHHhh---cChhhHHHHHHHhcc-CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccC-ChhhHHHHHHH
Q 044770 239 DVLIILYGYL---AKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-ATEQYNSVISV 313 (464)
Q Consensus 239 ~~l~~~~~~~---~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~ 313 (464)
..+...--.. +..+.....++.+.. .....+.+|..++..-.+..-+..|..+|.+..+.+..+ ++..+++++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 1111000000 012222333333333 222233456666666666666777777777777665555 56666666665
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCccH-HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc--HHHHHHHHHH
Q 044770 314 YCKNGFIDKASGLLKEMSMNGCKPNA-ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW--LETTLSIIEI 390 (464)
Q Consensus 314 ~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~ 390 (464)
||. ++.+-|..+|+--... -+|. .--...+.-+.+.++-..+..+|+..+ ..++.|+ ..+|..++..
T Consensus 412 ~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l-------~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 412 YCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVL-------TSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred Hhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHH-------hccCChhhhHHHHHHHHHH
Confidence 554 4556677777654442 2232 223344555566677777777777763 3344443 3567777776
Q ss_pred HHhcCChhhHHHHHHHHHH
Q 044770 391 FAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 391 ~~~~g~~~~A~~~~~~m~~ 409 (464)
-..-|+...+.++-+++..
T Consensus 482 ES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHhcccHHHHHHHHHHHHH
Confidence 6777777777776665554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00014 Score=70.78 Aligned_cols=183 Identities=6% Similarity=0.066 Sum_probs=137.9
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhH
Q 044770 160 KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238 (464)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (464)
..+.+...+-.|.....+.|.+++|..+++...+. .|| ......+...+.+.+++++|....++.... -+.+....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-~p~~~~~~ 157 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-GSSSAREI 157 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-CCCCHHHH
Confidence 34667888888999999999999999999999876 565 455677888899999999999999999886 34456777
Q ss_pred HHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcC
Q 044770 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318 (464)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 318 (464)
..+..++...|++++|..+|+++....+.+..++..+...+-..|+.++|...|+...+. ..+....|+..+.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~------ 230 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV------ 230 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH------
Confidence 788888999999999999999998866677788999999999999999999999998873 3344455655443
Q ss_pred ChhHHHHHHHHHHhCC----CCccHHHHHHHHHHHHhc
Q 044770 319 FIDKASGLLKEMSMNG----CKPNAITYRHLALGCFKS 352 (464)
Q Consensus 319 ~~~~a~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~ 352 (464)
+...-..+++++.-.+ ...........|.-+.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 231 DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 3344556666665433 222334445555555443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00021 Score=58.53 Aligned_cols=237 Identities=11% Similarity=-0.036 Sum_probs=124.3
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCc
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGV 110 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~ 110 (464)
-++-+.-.|++..++..-...... +-+...-..+-+.|...|+.....+ +++.. .|.......+......-++
T Consensus 14 ~iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 14 NIRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVIS---EIKEGKATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccc---ccccccCChHHHHHHHHHHhhCcch
Confidence 345555667777776665554331 2233344445556666666543332 22222 1333333333333333344
Q ss_pred HHHHHH-HHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 044770 111 IKLSLE-YMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189 (464)
Q Consensus 111 ~~~a~~-~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (464)
-++-+. +.+.+.......+......-...|++.|++++|.+...... ...... .=...+.+..+++-|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~A--l~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAA--LNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 333333 33444433333332333333445777777777777766521 222222 22344556677777777777
Q ss_pred HHHhCCCCCcHhHHHHHHHHHHh----cChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCC
Q 044770 190 DMKRSEVEPNEVSYCILATAHAV----ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265 (464)
Q Consensus 190 ~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (464)
+|.+- -+..|.+.|..++.+ .+...+|.-+|++|-++ .+|++.+.+-...++...+++++|+.+++......
T Consensus 162 ~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 77753 255666666666553 34566777777777654 56666666666666666666666666666665544
Q ss_pred CCchhhHHHHHHHhhccCC
Q 044770 266 NVRSKSYVLAIEAFGRIAQ 284 (464)
Q Consensus 266 ~~~~~~~~~l~~~~~~~g~ 284 (464)
..++.+...++..-...|.
T Consensus 238 ~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGK 256 (299)
T ss_pred CCCHHHHHHHHHHHHHhCC
Confidence 4444444444444444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.2e-06 Score=62.88 Aligned_cols=98 Identities=8% Similarity=-0.086 Sum_probs=52.9
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVI 103 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~ 103 (464)
++..+......+...|++++|...|+...... +.+...|..+..++...|++++|...|++.... +.+...+..+..
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~ 100 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGV 100 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 33334444555555566666666666555422 234445555555555566666666666555544 224455555555
Q ss_pred HHHhhCcHHHHHHHHHHHHHc
Q 044770 104 ACLDKGVIKLSLEYMKKMRVL 124 (464)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~ 124 (464)
++...|++++|+..|+...+.
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 555556666666665555553
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00035 Score=56.86 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=126.2
Q ss_pred cCChhHHHHHHHHHHh---CC-CCCcHhH-HHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChh
Q 044770 178 DHNIEGLMKVYSDMKR---SE-VEPNEVS-YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252 (464)
Q Consensus 178 ~~~~~~a~~~~~~m~~---~~-~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (464)
..+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|...++.+... ++.+..+...-...+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 4556677777766653 23 4455443 455666667778888888888877665 3333333333333455567888
Q ss_pred hHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 253 DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
+|.++++.+.+..+.+..++-.=+...-..|+.-+|++-+....+ .+.-|...|.-+...|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 888888888887777777777666666667777788888877777 4566888899999999999999999999988887
Q ss_pred CCCCc-cHHHHHHHHHHHHhc---CChHHHHHHHHHhH
Q 044770 333 NGCKP-NAITYRHLALGCFKS---NLVEEGFKALELGM 366 (464)
Q Consensus 333 ~g~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~ 366 (464)
+.| ++..+..+...+... .+.+.+..+++.++
T Consensus 183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 445 444455555554433 35667788888874
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.2e-05 Score=61.43 Aligned_cols=99 Identities=10% Similarity=0.006 Sum_probs=47.9
Q ss_pred ChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHh-hccCC--hHHHHHHHHHHHhccccCChhhHHHH
Q 044770 234 NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF-GRIAQ--VSRAEELWLEMQSVKQLKATEQYNSV 310 (464)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l 310 (464)
+...|..+...|...|+++.|...++......+.+...+..+..++ ...|+ .++|.+++++..+.. +-+...+..+
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~L 150 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLL 150 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHH
Confidence 3444444444444444444444444444443444444444444432 34444 355555555555522 2244455555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 044770 311 ISVYCKNGFIDKASGLLKEMSMN 333 (464)
Q Consensus 311 i~~~~~~~~~~~a~~~~~~m~~~ 333 (464)
...+...|++++|+..|+++.+.
T Consensus 151 A~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 151 ASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555555555555555555543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.4e-05 Score=61.67 Aligned_cols=92 Identities=4% Similarity=-0.175 Sum_probs=57.9
Q ss_pred HHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCC
Q 044770 240 VLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319 (464)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 319 (464)
.....+...|++++|...++......+.+...+..+..++...|++++|...|+..... .+.+...+..+..++...|+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-DASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHcCC
Confidence 34445555555555665555555555555556666666666677777777777766663 23456666666667777777
Q ss_pred hhHHHHHHHHHHh
Q 044770 320 IDKASGLLKEMSM 332 (464)
Q Consensus 320 ~~~a~~~~~~m~~ 332 (464)
+++|...|+...+
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777666
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.7e-07 Score=49.44 Aligned_cols=33 Identities=39% Similarity=0.709 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 338 (464)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688899999999999999999999998888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.7e-07 Score=49.45 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcH
Q 044770 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416 (464)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 416 (464)
+|++++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0012 Score=64.24 Aligned_cols=55 Identities=7% Similarity=0.020 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHH
Q 044770 63 LDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEY 117 (464)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~ 117 (464)
..|..|...|....+...|.+.|+...+. ..+...+......|+...+++.|..+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 34555555555555555555555555444 22344555555555555555555555
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00094 Score=54.44 Aligned_cols=188 Identities=12% Similarity=0.025 Sum_probs=142.1
Q ss_pred cChhhHHHHHHHHHHhc---c-CCCCh-hhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHH
Q 044770 213 ARLYTVAETYVEALEKS---M-TGNNW-STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSR 287 (464)
Q Consensus 213 ~~~~~~a~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 287 (464)
..+.++..+++.++... | ..++. ..|..++-+....|+.+.|...++.+....+.+..+-..-...+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 45667777777776432 3 44443 4566677788889999999999999988665555444433445566899999
Q ss_pred HHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHH
Q 044770 288 AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 288 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 367 (464)
|.++++.+.+.. +.|..++-.=+...-..|+.-+|++-+.+..+. +.-|...|.-+...|...|+++.|.-.+++++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l- 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL- 181 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-
Confidence 999999999844 557778877777777888888999988888876 66699999999999999999999999999994
Q ss_pred HHhhhhhcCCCCc-HHHHHHHHHHHHhcC---ChhhHHHHHHHHHHcC
Q 044770 368 LITTKKVRSSTPW-LETTLSIIEIFAEKG---DVGNAENLFEELKKAN 411 (464)
Q Consensus 368 ~~~~~~~~~~~p~-~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~ 411 (464)
-+.|. ...+..+.+.+.-.| +.+-|.+.|.+..+..
T Consensus 182 --------l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 --------LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred --------HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 34554 344456666665555 4667888888888754
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.6e-06 Score=47.95 Aligned_cols=33 Identities=36% Similarity=0.548 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 044770 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337 (464)
Q Consensus 305 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 337 (464)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.9e-06 Score=47.61 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 044770 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 414 (464)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888876
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00048 Score=66.76 Aligned_cols=155 Identities=10% Similarity=-0.085 Sum_probs=75.9
Q ss_pred hhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHH--H--hCCCCccHHHHHH
Q 044770 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM--S--MNGCKPNAITYRH 344 (464)
Q Consensus 269 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m--~--~~g~~p~~~~~~~ 344 (464)
..+|..+...+....+++.|...|...... .+.|...|-.........|+.-++..+|..- . ..|-.|+..-+..
T Consensus 850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSL-dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c 928 (1238)
T KOG1127|consen 850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSL-DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLC 928 (1238)
T ss_pred hhheeccceeEEecccHHHhhHHHHhhhhc-CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHH
Confidence 334444445555666777777777766652 2335556655555555667777777777652 1 1233333333322
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHHH--hhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCcHHHHHH
Q 044770 345 LALGCFKSNLVEEGFKALELGMKLI--TTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA-NYTKYTFVYNT 421 (464)
Q Consensus 345 ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ 421 (464)
...-....|+.++-+...+.+.... ...--.+.+.....|.+.....-+.+...+|.+...+...- ..+-+...||.
T Consensus 929 ~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynv 1008 (1238)
T KOG1127|consen 929 ATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNV 1008 (1238)
T ss_pred HHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 2223344455544433333321110 00011233334556666666666677777776666554310 01134455665
Q ss_pred HHH
Q 044770 422 LIK 424 (464)
Q Consensus 422 li~ 424 (464)
+..
T Consensus 1009 ak~ 1011 (1238)
T KOG1127|consen 1009 AKP 1011 (1238)
T ss_pred hhh
Confidence 433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.9e-05 Score=58.76 Aligned_cols=87 Identities=7% Similarity=0.003 Sum_probs=40.7
Q ss_pred HHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHH
Q 044770 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324 (464)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 324 (464)
+...|++++|.+.++.+....+.+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.
T Consensus 27 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~ 105 (135)
T TIGR02552 27 LYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESAL 105 (135)
T ss_pred HHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 3333344444444433333333333344444555555555555555555544422 223444444555555555555555
Q ss_pred HHHHHHHh
Q 044770 325 GLLKEMSM 332 (464)
Q Consensus 325 ~~~~~m~~ 332 (464)
..|+...+
T Consensus 106 ~~~~~al~ 113 (135)
T TIGR02552 106 KALDLAIE 113 (135)
T ss_pred HHHHHHHH
Confidence 55555554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.8e-05 Score=59.55 Aligned_cols=93 Identities=8% Similarity=-0.044 Sum_probs=39.8
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 044770 99 NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND 178 (464)
Q Consensus 99 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (464)
..+...+...|++++|.+.|+.....+ +.+...+..+...+...|+++.|...+++..+.+ +.+...+..+...+...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 333344444444444444444444432 2233344444444444444444444444444332 22333333444444444
Q ss_pred CChhHHHHHHHHHHh
Q 044770 179 HNIEGLMKVYSDMKR 193 (464)
Q Consensus 179 ~~~~~a~~~~~~m~~ 193 (464)
|++++|...|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0068 Score=58.48 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCChh---hHHHHHHHHHHcCCCCc-HHHHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCHHHHHHHHH
Q 044770 384 TLSIIEIFAEKGDVG---NAENLFEELKKANYTKY-TFVYNTLIKAYVKAKIN--DPNLLRRMILGGARPDAETYSLLKL 457 (464)
Q Consensus 384 ~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~L~~ 457 (464)
-+.|++.+-+.++.. +|+-+++.-.... |. ..+--.+|+.|+--|-. |.++|+.|--.+|+-|..-|.++-.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHH
Confidence 467888898888865 4444454444322 33 33455788899888853 8888988888888888777766544
Q ss_pred H
Q 044770 458 A 458 (464)
Q Consensus 458 ~ 458 (464)
+
T Consensus 517 ~ 517 (932)
T KOG2053|consen 517 A 517 (932)
T ss_pred H
Confidence 4
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0002 Score=55.39 Aligned_cols=125 Identities=15% Similarity=0.142 Sum_probs=83.0
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH--HHHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA---TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA--ITYRHLA 346 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll 346 (464)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........|+. .....+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44555555 3677788888888877743 222 122333456777888888888888888886533322 2334456
Q ss_pred HHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 044770 347 LGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407 (464)
Q Consensus 347 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (464)
..+...|++++|+..++.. ..... ....+....+.|.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-------~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-------PDEAF--KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-------cCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6777888888888888765 32333 3445567888888889999888888753
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.6e-05 Score=67.65 Aligned_cols=124 Identities=14% Similarity=0.086 Sum_probs=85.2
Q ss_pred CCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhC--CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhH
Q 044770 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD--KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVS 202 (464)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 202 (464)
+.+.+......+++.+....+++.+..++...... ....-..|..++++.|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34455666666777777777777777777776653 2222233455777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhh
Q 044770 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248 (464)
Q Consensus 203 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (464)
++.+|..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777776666666666666666666555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0097 Score=57.50 Aligned_cols=200 Identities=11% Similarity=0.053 Sum_probs=117.8
Q ss_pred hHHHHHHH--HhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHH
Q 044770 29 IFHSINRL--RKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACL 106 (464)
Q Consensus 29 ~~~~l~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~ 106 (464)
+..++.++ .+.|+.++|..+++...... ..|..|...+-..|...++.++|..++++.....|+......+..+|.
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayv 121 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYV 121 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHH
Confidence 33444443 47788888887777765422 237778888888888888888888888888887777666667777777
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC-C---------cccHHHHHHHHHhCC-CCCChhhHHHHHHHH
Q 044770 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG-R---------RKTIPNILRQMKADK-VAPHVSTFHILMKIE 175 (464)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 175 (464)
+.+++.+-.+.=-+|-+. .+-....|=++++.....- . ..-|.+.++.+.+.+ -.-+..-...-...+
T Consensus 122 R~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL 200 (932)
T KOG2053|consen 122 REKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLIL 200 (932)
T ss_pred HHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHH
Confidence 777776544443333332 3333344333444333211 1 123555566665543 111222222333445
Q ss_pred HccCChhHHHHHHH-HHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccC
Q 044770 176 ANDHNIEGLMKVYS-DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT 231 (464)
Q Consensus 176 ~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 231 (464)
...|++++|++++. ...+.-..-+...-+--+..+...++|.+..++-.++...|.
T Consensus 201 ~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 56788888888883 333332233333444555666777788887777777776653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.9e-05 Score=66.84 Aligned_cols=126 Identities=10% Similarity=0.033 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (464)
...-..|+..+...++++.|+.+|+++.+.. |+ ....+++.+...++-.+|.+++++..+.. +.+......-...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445667777788899999999999999864 44 44457778878888889999999988653 5566777777788
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHHHHHHHHH
Q 044770 175 EANDHNIEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEALE 227 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 227 (464)
+.+.++++.|+++.+++.+. .|+ -.+|..|..+|.+.|+++.|+..+..+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999876 555 4589999999999999999998888764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.7e-05 Score=53.49 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=67.5
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccc-cCChhhHHHHHHHHHhcC--------ChhHHHHHHHHHHhCCCCccHHHHHH
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQ-LKATEQYNSVISVYCKNG--------FIDKASGLLKEMSMNGCKPNAITYRH 344 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~g~~p~~~~~~~ 344 (464)
..|..+...+++...-.+|+.++..|+ .|++.+|+.++.+.++.. +....+.+|++|+..+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 446666667999999999999999999 899999999999988753 34567889999999999999999999
Q ss_pred HHHHHHh
Q 044770 345 LALGCFK 351 (464)
Q Consensus 345 ll~~~~~ 351 (464)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 9998765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.5e-05 Score=67.70 Aligned_cols=122 Identities=14% Similarity=0.120 Sum_probs=87.6
Q ss_pred CCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCC---CchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhH
Q 044770 231 TGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN---VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307 (464)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 307 (464)
.+.+......+++.+....+.+.+..++-.+...+. ..+.+..++++.|.+.|..+.+..++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 334455555666666666666666666666555322 23445568888888888888888888887788888888888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhc
Q 044770 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS 352 (464)
Q Consensus 308 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 352 (464)
|.+++.+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888777777777777666666654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.8e-05 Score=53.94 Aligned_cols=41 Identities=10% Similarity=0.175 Sum_probs=22.4
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCC-CCchhhHHHHHHHhc
Q 044770 101 LVIACLDKGVIKLSLEYMKKMRVLGH-SISYLVFNRLIILNS 141 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~ 141 (464)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++...+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~ 72 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIA 72 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 34444444555555555555555555 555555555555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00016 Score=64.86 Aligned_cols=123 Identities=11% Similarity=0.056 Sum_probs=70.8
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhh
Q 044770 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248 (464)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (464)
..|+..+...++++.|..+|+++.+.. |+ ....++..+...++..+|.+++.+..+. .+.+......-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 345556666778888888888887663 44 3344666666677777777777777654 222333333334444555
Q ss_pred cChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHH
Q 044770 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296 (464)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 296 (464)
++++.|..+.+......+.+..+|..|..+|...|+++.|+..+..+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 555555555555555444444455555555555555555555544433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.2e-06 Score=43.67 Aligned_cols=30 Identities=43% Similarity=0.700 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGC 335 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 335 (464)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00036 Score=53.98 Aligned_cols=116 Identities=9% Similarity=-0.042 Sum_probs=71.9
Q ss_pred hcChhhHHHHHHHhccCCCCch---hhHHHHHHHhhccCChHHHHHHHHHHHhccccCC--hhhHHHHHHHHHhcCChhH
Q 044770 248 LAKGKDLERIWATVQELPNVRS---KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA--TEQYNSVISVYCKNGFIDK 322 (464)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~ 322 (464)
.++...+...++.+....+.+. .....+...+...|++++|...|+.+......|+ ....-.+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4444555555555554333332 1233455667778888888888888877552222 1234446677778888888
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 323 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
|+..++...... .....+......+.+.|+.++|...|+.+
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888886643322 23445556667788888888888888765
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.97 E-value=1e-05 Score=43.48 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 044770 383 TTLSIIEIFAEKGDVGNAENLFEELKKANY 412 (464)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 412 (464)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 689999999999999999999999998774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00026 Score=52.69 Aligned_cols=99 Identities=11% Similarity=0.051 Sum_probs=70.0
Q ss_pred hchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC-CchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc----hhHHHHH
Q 044770 27 GEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP-KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN----ELLYNNL 101 (464)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~l 101 (464)
.++......+.+.|++++|.+.|+.+.+..+-.+ ....+..+...+.+.|+++.|...|+.+....|+ ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4566777778888888888888888876432111 1245566777888888888888888877654333 3456677
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHcC
Q 044770 102 VIACLDKGVIKLSLEYMKKMRVLG 125 (464)
Q Consensus 102 i~~~~~~~~~~~a~~~~~~m~~~~ 125 (464)
..++.+.|++++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 777778888888888888887763
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00022 Score=56.96 Aligned_cols=116 Identities=17% Similarity=0.208 Sum_probs=78.5
Q ss_pred HHHhhhcCCCCCchhHHHHHHHHHHh-----hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHH
Q 044770 82 EKLFCCIPKDYQNELLYNNLVIACLD-----KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 156 (464)
...|+.......+..+|..+++.|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE 111 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH
Confidence 34455553334566677777777654 36777777788888888888888888888887764 3221 11122211
Q ss_pred HhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChh
Q 044770 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216 (464)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 216 (464)
- . -.-.+.+-|++++++|...|+-||..|+..+++.+.+.+..
T Consensus 112 F--------------~---hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 112 F--------------M---HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred h--------------c---cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 1 1 11234567889999999999999999999999998776654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.011 Score=55.88 Aligned_cols=340 Identities=14% Similarity=0.117 Sum_probs=197.5
Q ss_pred HhhcCccChhchHH-----HHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcCh---HHHHHHhhhcC
Q 044770 18 MREGFPVHRGEIFH-----SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGI---SQGEKLFCCIP 89 (464)
Q Consensus 18 ~~~g~~~~~~~~~~-----~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~ 89 (464)
.+-|+|.+-..|.. ++..+...+.+..|+++.+++....+ . ...+|......+.+..+. +.+..+-+++.
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~-~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPES-Q-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccc-c-ccHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 44588888877765 77888899999999999999854111 1 156677777777766332 22333333333
Q ss_pred CCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCC----CchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCCh
Q 044770 90 KDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHS----ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHV 165 (464)
Q Consensus 90 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (464)
.......+|..+.+-.-..|+++.|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-++.+. .+.
T Consensus 502 ~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 502 AKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred ccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 32234567888887777899999999887543222211 12233444555566666666666666665542 121
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHH--HH----HhccCCCChhhHH
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE--AL----EKSMTGNNWSTLD 239 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~--~~----~~~~~~~~~~~~~ 239 (464)
..|... ..+..-|..+|.+..+.. |..+. ..+.+.++-.++..-|. .. ...+..|+ ..
T Consensus 579 s~l~~~------l~~~p~a~~lY~~~~r~~---~~~~l----~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk 642 (829)
T KOG2280|consen 579 SSLFMT------LRNQPLALSLYRQFMRHQ---DRATL----YDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LK 642 (829)
T ss_pred HHHHHH------HHhchhhhHHHHHHHHhh---chhhh----hhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HH
Confidence 112111 223445566666554321 11111 11112222222211111 10 00122222 22
Q ss_pred HHHHHHHhhcChh----------hHHHHHHHhcc--CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhH
Q 044770 240 VLIILYGYLAKGK----------DLERIWATVQE--LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307 (464)
Q Consensus 240 ~l~~~~~~~~~~~----------~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 307 (464)
.....+.+..... .-.++.+.+.. +.....-+.+--+.-+...|+..+|.++-.+..- ||-..|
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~ 718 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLW 718 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhH
Confidence 2333343333211 11222222322 2223334566667778888999999988777665 788888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHH
Q 044770 308 NSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387 (464)
Q Consensus 308 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 387 (464)
-.=+.+++..+++++-.++-+.+. .+.-|.-+..+|.+.|+.++|..++... .+.. -.
T Consensus 719 wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv---------~~l~-------ek 776 (829)
T KOG2280|consen 719 WLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV---------GGLQ-------EK 776 (829)
T ss_pred HHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc---------CChH-------HH
Confidence 888999999999988877766544 2456777889999999999999988776 2222 46
Q ss_pred HHHHHhcCChhhHHHHH
Q 044770 388 IEIFAEKGDVGNAENLF 404 (464)
Q Consensus 388 i~~~~~~g~~~~A~~~~ 404 (464)
+.+|.+.|++.+|.++-
T Consensus 777 v~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 777 VKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHHhccHHHHHHHH
Confidence 78899999999998774
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00025 Score=61.59 Aligned_cols=128 Identities=10% Similarity=0.100 Sum_probs=60.2
Q ss_pred hHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHH-HHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhc
Q 044770 64 DYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIA-CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141 (464)
Q Consensus 64 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 141 (464)
+|..++...-+.+..+.|+.+|.+..+..+ +...|-..... +...++.+.|..+|+...+. ++.+...|...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 344555555555555555555555543311 22233322222 22234444455555555543 3444555555555555
Q ss_pred CCCCcccHHHHHHHHHhCCCCCCh---hhHHHHHHHHHccCChhHHHHHHHHHHh
Q 044770 142 SPGRRKTIPNILRQMKADKVAPHV---STFHILMKIEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 193 (464)
+.++.+.|..+|++.... +.++. ..|...++.=.+.|+.+.+.++.+.+.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555543 22221 3555555555555666666666555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.5e-05 Score=52.19 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=55.8
Q ss_pred hcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHH
Q 044770 39 LQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYM 118 (464)
Q Consensus 39 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 118 (464)
.|+++.|+.+++.+.+..+..++...+-.+..++.+.|++++|..+++.......+....-.+..++.+.|++++|+++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 57888899999888875432223444555778888888888888888882222334344445578888888888888888
Q ss_pred HH
Q 044770 119 KK 120 (464)
Q Consensus 119 ~~ 120 (464)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 65
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0075 Score=52.67 Aligned_cols=96 Identities=13% Similarity=0.145 Sum_probs=57.9
Q ss_pred HHHHHHHhcCC-CCcccHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCC-----CcH
Q 044770 133 FNRLIILNSSP-GRRKTIPNILRQMKAD----KVAPH--VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE-----PNE 200 (464)
Q Consensus 133 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~ 200 (464)
+..+...|-.. |+++.|.+.|++..+. | .+. ..++..+...+.+.|++++|.++|++....... .+.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 34444566666 7888888888877642 2 111 235566777888888999999999888654322 122
Q ss_pred h-HHHHHHHHHHhcChhhHHHHHHHHHHhc
Q 044770 201 V-SYCILATAHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 201 ~-~~~~li~~~~~~~~~~~a~~~~~~~~~~ 229 (464)
. .|-..+-++...|++..|...+++....
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1 1223333566678888888888887654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0013 Score=48.86 Aligned_cols=101 Identities=16% Similarity=0.061 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--ccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHH
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCK--PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~ 383 (464)
++......+.+.|++++|...|..+.+.... .....+..+...+...|+++.|...++.+... ..+.......
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~ 78 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCCCcccHH
Confidence 4455566666677777777777777653211 11234455666677777777777777776321 1111112344
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 044770 384 TLSIIEIFAEKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~~~~ 411 (464)
+..+...+.+.|+.++|...++++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 5566666777777777777777777653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00037 Score=49.17 Aligned_cols=89 Identities=13% Similarity=0.032 Sum_probs=36.6
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 044770 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (464)
+...+...|++++|+..++...+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3344444455555555554444431 1122333333444444444444444444443332 2222333344444444444
Q ss_pred hhHHHHHHHHH
Q 044770 181 IEGLMKVYSDM 191 (464)
Q Consensus 181 ~~~a~~~~~~m 191 (464)
++.|...+...
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.031 Score=49.96 Aligned_cols=50 Identities=8% Similarity=-0.024 Sum_probs=31.3
Q ss_pred HHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 044770 349 CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407 (464)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (464)
+...|++.++.-.-... ..+.|++.+|..+.-.+....++++|..++..+
T Consensus 472 Lysqgey~kc~~ys~WL---------~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWL---------TKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhcccHHHHHHHHHHH---------HHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34556666666555555 456666666666666666666777777666544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00061 Score=48.05 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
+..+...+...|++++|.+.++...
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.001 Score=57.73 Aligned_cols=96 Identities=11% Similarity=0.014 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHH-HHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHH
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA-HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (464)
.+|..+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. .+.+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666666666666666432 1122222222222 22245555566666666554 44444444444444
Q ss_pred HHhhcChhhHHHHHHHhcc
Q 044770 245 YGYLAKGKDLERIWATVQE 263 (464)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~ 263 (464)
+...++.+.+..+|++...
T Consensus 80 l~~~~d~~~aR~lfer~i~ 98 (280)
T PF05843_consen 80 LIKLNDINNARALFERAIS 98 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCC
T ss_pred HHHhCcHHHHHHHHHHHHH
Confidence 4444555454444444444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.018 Score=50.36 Aligned_cols=201 Identities=15% Similarity=0.082 Sum_probs=107.5
Q ss_pred HHHHHccCChhHHHHHHHHHHhC----CCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 044770 172 MKIEANDHNIEGLMKVYSDMKRS----EVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246 (464)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (464)
...|...+++++|.+.|.+.... +-.. -...|.....+| +..++++|...+++. +..|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A---------------~~~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKA---------------IEIYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHH---------------HHHHH
Confidence 34566667777777776665321 1000 012233333333 233555555555544 33455
Q ss_pred hhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhcc-CChHHHHHHHHHHHhccc---cC--ChhhHHHHHHHHHhcCCh
Q 044770 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI-AQVSRAEELWLEMQSVKQ---LK--ATEQYNSVISVYCKNGFI 320 (464)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~~~~ 320 (464)
..|+...+-+. +..+...|... |+++.|.+.|++..+.-. .+ -..++..+...+.+.|++
T Consensus 106 ~~G~~~~aA~~--------------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 106 EAGRFSQAAKC--------------LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HCT-HHHHHHH--------------HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred hcCcHHHHHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 66666665544 34556677777 888888888887664211 11 133567778889999999
Q ss_pred hHHHHHHHHHHhCCC-----CccHH-HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc--HHHHHHHHHHHH
Q 044770 321 DKASGLLKEMSMNGC-----KPNAI-TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW--LETTLSIIEIFA 392 (464)
Q Consensus 321 ~~a~~~~~~m~~~g~-----~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~ 392 (464)
++|.++|++...... +++.. .|-..+-++...||...|...++.... ...++..+ ......|+.++-
T Consensus 172 ~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~-----~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 172 EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS-----QDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT-----TSTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCCCcHHHHHHHHHHHHHH
Confidence 999999999876432 22232 233334456667999999999998732 12233333 334456666653
Q ss_pred hcCChh---hHHHHHHHHH
Q 044770 393 EKGDVG---NAENLFEELK 408 (464)
Q Consensus 393 ~~g~~~---~A~~~~~~m~ 408 (464)
.|+.+ +|..-|+.+.
T Consensus 247 -~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 247 -EGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp -TT-CCCHHHHCHHHTTSS
T ss_pred -hCCHHHHHHHHHHHcccC
Confidence 34443 4444444333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.023 Score=50.10 Aligned_cols=196 Identities=13% Similarity=0.016 Sum_probs=98.4
Q ss_pred HHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHH--hhccCChHHHHHHHHHHHhccccCChhh-------------HH
Q 044770 244 LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEA--FGRIAQVSRAEELWLEMQSVKQLKATEQ-------------YN 308 (464)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------------~~ 308 (464)
++...|+.++|.+.--.+.+....+. +..++++ +--.++.+.|...|++....+ |+... |.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNA--EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchh--HHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 34445555555554444444333333 2222222 223455566666665555432 22111 11
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC---CCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc-HHHH
Q 044770 309 SVISVYCKNGFIDKASGLLKEMSMN---GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LETT 384 (464)
Q Consensus 309 ~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~ 384 (464)
.=..-..+.|++..|.+.|.+.+.. ...|+...|.....+..+.|+.++|+.--+.++ .+.|. +..|
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---------~iD~syikal 324 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---------KIDSSYIKAL 324 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---------hcCHHHHHHH
Confidence 1122335667777788888777652 234455566666666677777777777777663 22221 1122
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHH-HHHHHHHHHHHcCCC-hhHHHHHHHhCCCCCCHHHH
Q 044770 385 LSIIEIFAEKGDVGNAENLFEELKKANYTKYTF-VYNTLIKAYVKAKIN-DPNLLRRMILGGARPDAETY 452 (464)
Q Consensus 385 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~-a~~~~~~m~~~~~~p~~~t~ 452 (464)
-.-..++...++|++|.+-++...+..-.+... ++.-...++-++.+. -..++---+.....|+...|
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkay 394 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAY 394 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHH
Confidence 222333444566777777777666544333333 666666666666543 23333333333333444444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0066 Score=44.57 Aligned_cols=109 Identities=14% Similarity=0.017 Sum_probs=70.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCC-CCcHHHHHH
Q 044770 310 VISVYCKNGFIDKASGLLKEMSMNGCKPN--AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS-TPWLETTLS 386 (464)
Q Consensus 310 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~p~~~~~~~ 386 (464)
...++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++..+. ...- ..+......
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~------~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE------EFPDDELNAALRVF 80 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------HCCCccccHHHHHH
Confidence 45566777888888888888888776654 23455566677788888888888888742 1111 112222223
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 044770 387 IIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVK 428 (464)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 428 (464)
+..++...|+.++|.+.+-.... ++...|.--|..|..
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 44566778888888888766554 344577776666653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00013 Score=50.30 Aligned_cols=80 Identities=20% Similarity=0.189 Sum_probs=55.6
Q ss_pred cCChHHHHHHHHHHHhcccc-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCChHHHH
Q 044770 282 IAQVSRAEELWLEMQSVKQL-KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN-AITYRHLALGCFKSNLVEEGF 359 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~ 359 (464)
.|+++.|..+++++.+.... ++...+-.+..+|.+.|++++|+.+++. .+ ..|+ ......+..+|...|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 47788888888888875442 2445566678888899999999999887 32 2232 234445567788889999998
Q ss_pred HHHHH
Q 044770 360 KALEL 364 (464)
Q Consensus 360 ~~~~~ 364 (464)
.++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88875
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0026 Score=50.93 Aligned_cols=89 Identities=12% Similarity=0.100 Sum_probs=53.4
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc--hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS--YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL 171 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (464)
....+..+...+...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344566666667777777777777777765432221 3456666666777777777777777766542 2334455555
Q ss_pred HHHHHccCChhH
Q 044770 172 MKIEANDHNIEG 183 (464)
Q Consensus 172 ~~~~~~~~~~~~ 183 (464)
...+...|+...
T Consensus 113 g~~~~~~g~~~~ 124 (172)
T PRK02603 113 AVIYHKRGEKAE 124 (172)
T ss_pred HHHHHHcCChHh
Confidence 556666555433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0026 Score=50.65 Aligned_cols=63 Identities=14% Similarity=0.070 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC--cHhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEP--NEVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
..|..+...+...|++++|+..|++.......| ...+|..+...+...|++++|+..++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555566666666665554432111 123455555555555566666555555544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00081 Score=53.80 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=69.8
Q ss_pred ccHHHHHHHHHHHHhc-----CChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhc----------------C
Q 044770 337 PNAITYRHLALGCFKS-----NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK----------------G 395 (464)
Q Consensus 337 p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----------------g 395 (464)
-|..+|..++..|.+. |.++=....+..| .+.|+.-|..+|+.|++.+=+. .
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M-------~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~ 117 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKM-------DEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPR 117 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHH-------HHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcH
Confidence 4677777777777643 4555555666666 7899999999999999987542 2
Q ss_pred ChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC
Q 044770 396 DVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN 432 (464)
Q Consensus 396 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 432 (464)
+-+-|++++++|...|+-||..++..+++.|.+.+..
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 2345889999999999999999999999999988865
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0016 Score=58.75 Aligned_cols=90 Identities=4% Similarity=-0.109 Sum_probs=59.2
Q ss_pred HHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChh
Q 044770 103 IACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE 182 (464)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (464)
..+...|++++|++.|++.++.. +-+...|..+..++.+.|++++|...++++++.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34455677777777777777653 2345566666666777777777777777776653 345556666667777777777
Q ss_pred HHHHHHHHHHhC
Q 044770 183 GLMKVYSDMKRS 194 (464)
Q Consensus 183 ~a~~~~~~m~~~ 194 (464)
+|...|++..+.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 777777776654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0021 Score=58.02 Aligned_cols=90 Identities=14% Similarity=-0.058 Sum_probs=59.8
Q ss_pred HHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChH
Q 044770 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVS 286 (464)
Q Consensus 207 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 286 (464)
...+...|++++|+..|+++.... +.+...+..+..++...|++++|...++.+....+.+...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 344556677777777777776652 2345566666666777777777777777666655555666666666777777777
Q ss_pred HHHHHHHHHHh
Q 044770 287 RAEELWLEMQS 297 (464)
Q Consensus 287 ~a~~~~~~~~~ 297 (464)
+|...|+...+
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 77777776665
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00042 Score=45.47 Aligned_cols=63 Identities=17% Similarity=0.164 Sum_probs=46.5
Q ss_pred HhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHH
Q 044770 37 RKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNL 101 (464)
Q Consensus 37 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 101 (464)
...|++++|++.|+.+.... +-+...+..+..+|.+.|++++|.++++++....|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 46788888888888888754 3366677778888888888888888888888776664444443
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0044 Score=58.59 Aligned_cols=134 Identities=9% Similarity=-0.078 Sum_probs=87.3
Q ss_pred CCCChhhHHHHHHHHHhhcC-----hhhHHHHHHHhccCCCCchhhHHHHHHHhhcc--------CChHHHHHHHHHHHh
Q 044770 231 TGNNWSTLDVLIILYGYLAK-----GKDLERIWATVQELPNVRSKSYVLAIEAFGRI--------AQVSRAEELWLEMQS 297 (464)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 297 (464)
.+.+...|...+++.....+ ...|..+|++..+..+.....+..+..++... .++..+.+.......
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 44556666666666544322 45666677776665555555555443333221 123344444444333
Q ss_pred c-cccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhH
Q 044770 298 V-KQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366 (464)
Q Consensus 298 ~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 366 (464)
. ....+...|..+.......|++++|...+++..+. .|+...|..+...+...|+.++|.+.++.++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 13335567777776777789999999999999884 4788888888899999999999999999884
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0038 Score=49.93 Aligned_cols=62 Identities=13% Similarity=0.043 Sum_probs=34.6
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc--HhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN--EVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
.+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555556666666666666666654322221 23455555556666666666666665554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.015 Score=55.03 Aligned_cols=147 Identities=12% Similarity=0.030 Sum_probs=92.0
Q ss_pred cCCCCchhhHHHHHHHhhcc-----CChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcC--------ChhHHHHHHHH
Q 044770 263 ELPNVRSKSYVLAIEAFGRI-----AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG--------FIDKASGLLKE 329 (464)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~ 329 (464)
..++.+...|...+++.... +..+.|..+|++..+.. +-....|..+..++.... +...+.+....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 35556666788777765432 33678888998888743 223445555444443321 12233333333
Q ss_pred HHhCC-CCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 330 MSMNG-CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 330 m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
..... ...+...|..+.-.....|++++|...+++++ ...|+...|..+...+...|+.++|.+.+++..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl---------~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI---------DLEMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH---------HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33321 22344566666555566788999999998884 344677888888888889999999999988887
Q ss_pred HcCCCCcHHHHHH
Q 044770 409 KANYTKYTFVYNT 421 (464)
Q Consensus 409 ~~~~~p~~~~~~~ 421 (464)
..+ |...+|..
T Consensus 481 ~L~--P~~pt~~~ 491 (517)
T PRK10153 481 NLR--PGENTLYW 491 (517)
T ss_pred hcC--CCCchHHH
Confidence 754 65555543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0051 Score=48.99 Aligned_cols=95 Identities=12% Similarity=0.020 Sum_probs=64.9
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHhccccC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-HHHHHHHHH
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK--ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN-AITYRHLAL 347 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 347 (464)
.+..+...+...|++++|...|+........+ ...+|..+...+...|++++|+..++..... .|+ ..++..+..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la~ 114 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 45666777777888888888888887543222 2346788888888889999999988888764 332 344555555
Q ss_pred HHH-------hcCChHHHHHHHHHhHH
Q 044770 348 GCF-------KSNLVEEGFKALELGMK 367 (464)
Q Consensus 348 ~~~-------~~~~~~~a~~~~~~~~~ 367 (464)
.+. ..|+++.|...+++...
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 555 67777777666666543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.014 Score=54.43 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=31.2
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
...+..-+.+...+..|-++|..|-+ ...++......++|++|..+-+..-+
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 33334444455666667777766654 33456666677777777777665544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.064 Score=45.49 Aligned_cols=175 Identities=10% Similarity=0.004 Sum_probs=104.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCcHh-H---HHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 044770 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEV-S---YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246 (464)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (464)
....+.+.|++++|.+.|+++...- |+.. . .-.+..++.+.+++++|...+++..+....-...-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 3444566788888888888887753 3322 2 13455667888888888888888877533322233333333332
Q ss_pred h--hc---------------Ch---hhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhh
Q 044770 247 Y--LA---------------KG---KDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306 (464)
Q Consensus 247 ~--~~---------------~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 306 (464)
. .+ +. ..|... +..++.-|=...-..+|..-+..+...- ...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~--------------~~~li~~yP~S~ya~~A~~rl~~l~~~l----a~~ 177 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRD--------------FSKLVRGYPNSQYTTDATKRLVFLKDRL----AKY 177 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHH--------------HHHHHHHCcCChhHHHHHHHHHHHHHHH----HHH
Confidence 1 11 11 122222 3344444444444555555444444310 001
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC--CCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMSMN--GCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
--.+..-|.+.|.+..|..-++.+++. +.+........+..+|...|..++|..+....
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 124566688899999999999999874 23334566778889999999999998877654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0056 Score=46.77 Aligned_cols=86 Identities=8% Similarity=-0.100 Sum_probs=36.0
Q ss_pred HHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHH
Q 044770 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289 (464)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 289 (464)
+...|++++|..+|+.+.... +-+..-|-.|..++...|++++|+..+.......+.++..+-.+..++...|+.+.|.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 334444444444444443321 1122233333333444444444444444443333333334444444455555555555
Q ss_pred HHHHHHH
Q 044770 290 ELWLEMQ 296 (464)
Q Consensus 290 ~~~~~~~ 296 (464)
+.|+...
T Consensus 124 ~aF~~Ai 130 (157)
T PRK15363 124 KALKAVV 130 (157)
T ss_pred HHHHHHH
Confidence 5554443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0079 Score=44.18 Aligned_cols=21 Identities=10% Similarity=-0.198 Sum_probs=10.0
Q ss_pred HHhcChhhHHHHHHHHHHhcc
Q 044770 210 HAVARLYTVAETYVEALEKSM 230 (464)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~ 230 (464)
+-..|+.++|+.+|++....|
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~g 31 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAG 31 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcC
Confidence 334445555555555544444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.04 Score=43.03 Aligned_cols=129 Identities=13% Similarity=0.019 Sum_probs=82.2
Q ss_pred CCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCC--CchhhHHH
Q 044770 197 EPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN--VRSKSYVL 274 (464)
Q Consensus 197 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 274 (464)
.|+...-..+..+....|+..+|...|++....-...|......+.++....++...+...++.+-+.++ .++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 5666666667777777788888888777777665666666777777777777777777777776655221 22334556
Q ss_pred HHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHH
Q 044770 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327 (464)
Q Consensus 275 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 327 (464)
+.+.|...|++++|+.-|+...+.- |+...-......+.+.|+.+++..-+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 6777777788887888887777643 33333222333455666655554433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.004 Score=47.52 Aligned_cols=92 Identities=5% Similarity=-0.147 Sum_probs=52.1
Q ss_pred HHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC
Q 044770 66 SYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144 (464)
Q Consensus 66 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 144 (464)
-.+...+...|++++|.++|+.+....| +..-|-.|..++-..|++++|+..|......+ +-|...+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3344445556666666666665554422 44455555555666666666666666665544 234555555555666666
Q ss_pred CcccHHHHHHHHHh
Q 044770 145 RRKTIPNILRQMKA 158 (464)
Q Consensus 145 ~~~~a~~~~~~~~~ 158 (464)
+.+.|.+.|+..+.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.013 Score=45.54 Aligned_cols=156 Identities=8% Similarity=-0.053 Sum_probs=110.3
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC--CCchhHHHHHHHHHHhh
Q 044770 31 HSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD--YQNELLYNNLVIACLDK 108 (464)
Q Consensus 31 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~ 108 (464)
.+..+..+.=+++...+-...-.. .-|+...--.|...+.+.|+..+|...|++.... ..+....-.+.++....
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~~~~~---~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~ 137 (251)
T COG4700 61 TLLMALQQKLDPERHLREATEELA---IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI 137 (251)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHh---hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh
Confidence 344455555555554443333322 4677888888999999999999999999988765 34677778888888999
Q ss_pred CcHHHHHHHHHHHHHcCC-CCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHH
Q 044770 109 GVIKLSLEYMKKMRVLGH-SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (464)
+++..|...++++.+... .-+..+.-.+.+.+...|...+|+.-|+..... -|+...-......+.+.|+.+++..-
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 999999999999887431 112344556778899999999999999999875 45544433344556777877666544
Q ss_pred HHHH
Q 044770 188 YSDM 191 (464)
Q Consensus 188 ~~~m 191 (464)
+..+
T Consensus 216 ~~~v 219 (251)
T COG4700 216 YVAV 219 (251)
T ss_pred HHHH
Confidence 4433
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.13 Score=47.97 Aligned_cols=382 Identities=11% Similarity=0.053 Sum_probs=215.3
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHH-hhC
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACL-DKG 109 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~-~~~ 109 (464)
++.---...+.+.+..+++.+.... +.-..-|......=.+.|..+.+.++|++-... +.++..|...+..+. ..|
T Consensus 51 li~~~~~~~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~ 128 (577)
T KOG1258|consen 51 LIQENDSIEDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNG 128 (577)
T ss_pred HHhccCchhHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCC
Confidence 3333333344466667777776533 223334566666667888888888888887776 346666766655443 457
Q ss_pred cHHHHHHHHHHHHHc-CCC-CchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHH---c------c
Q 044770 110 VIKLSLEYMKKMRVL-GHS-ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA---N------D 178 (464)
Q Consensus 110 ~~~~a~~~~~~m~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~------~ 178 (464)
+.+.....|+..+.. |.. -+...|...|..-...+++.....++++.++. |. ..|+....-|. + .
T Consensus 129 d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l~~~~~~~l 204 (577)
T KOG1258|consen 129 DPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLLNQNEEKIL 204 (577)
T ss_pred CHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHHhcCChhhh
Confidence 777777788777762 321 23456777777777788888888888888753 21 11221111111 1 1
Q ss_pred CChhHHHHHHHHHHhC---------------C----CCCc-HhH--HHHHHH-------HHHhcChhhHHHHHHHHHHhc
Q 044770 179 HNIEGLMKVYSDMKRS---------------E----VEPN-EVS--YCILAT-------AHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 179 ~~~~~a~~~~~~m~~~---------------~----~~p~-~~~--~~~li~-------~~~~~~~~~~a~~~~~~~~~~ 229 (464)
...+++.++-.....+ + ..|. ..+ .+.+-. .+............++.-.+.
T Consensus 205 ~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ikr 284 (577)
T KOG1258|consen 205 LSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKR 284 (577)
T ss_pred cCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccc
Confidence 1223322222221110 0 0111 101 111111 111112222222223322221
Q ss_pred ---cCCC----ChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccC
Q 044770 230 ---MTGN----NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302 (464)
Q Consensus 230 ---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 302 (464)
.+.| +..+|...+..-...|+.+.+.-.+++..-....-...|-..+.-....|+.+-|..++....+-..+.
T Consensus 285 pYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~ 364 (577)
T KOG1258|consen 285 PYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKK 364 (577)
T ss_pred cccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC
Confidence 1222 346777778888889999999999998877666666667777777777799999998888776643332
Q ss_pred ChhhHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCccHHHHH-HHHHHHHhcCChHHHHH---HHHHhHHHHhhhhhcCC
Q 044770 303 ATEQYNSVISVYC-KNGFIDKASGLLKEMSMNGCKPNAITYR-HLALGCFKSNLVEEGFK---ALELGMKLITTKKVRSS 377 (464)
Q Consensus 303 ~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~ 377 (464)
.+ ....+-..+. ..|+++.|..+++...+. . |+..-.. .-+....+.|..+.+.. ++... .....
T Consensus 365 ~~-~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~-------~~~~~ 434 (577)
T KOG1258|consen 365 TP-IIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSI-------YEGKE 434 (577)
T ss_pred Cc-HHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHh-------ccccc
Confidence 22 2222223333 457999999999999886 3 6543221 22333456777777773 33333 22222
Q ss_pred CCcHH--HHHHHHHH-HHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC
Q 044770 378 TPWLE--TTLSIIEI-FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAK 430 (464)
Q Consensus 378 ~p~~~--~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 430 (464)
.+... .+.-..+. +.-.++.+.|..++.++.+. ++++...|-.++.-+...+
T Consensus 435 ~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 435 NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 22211 11112221 22368899999999999886 4567778888888777776
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.077 Score=47.35 Aligned_cols=171 Identities=15% Similarity=0.097 Sum_probs=102.3
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHhccCCCC----chhhHHHHHHHhhc---cCChHHHHHHHHHHHhccccCChhhHHHH
Q 044770 238 LDVLIILYGYLAKGKDLERIWATVQELPNV----RSKSYVLAIEAFGR---IAQVSRAEELWLEMQSVKQLKATEQYNSV 310 (464)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 310 (464)
...++-+|....+++...++.+.+...+.. ...+-....-++.+ .|+.++|.+++..+......+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 334555677777788888888877775433 22222344556666 88999999999886666677788888888
Q ss_pred HHHHHhc---------CChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCC-hHHHHHHHHHhHHHHhhhhhcC---C
Q 044770 311 ISVYCKN---------GFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL-VEEGFKALELGMKLITTKKVRS---S 377 (464)
Q Consensus 311 i~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~---~ 377 (464)
...|-.. ...++|+..|.+.-+ +.||..+--.+...+...|. .+...++-+-.+++.....+.+ -
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 7766432 236778888887665 34554332222222222232 2222122111112111111222 3
Q ss_pred CCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 378 TPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 378 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
..+-..+..++.+..-.|+.+.|.+..+.|...
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 345555678888888999999999999999975
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.091 Score=44.56 Aligned_cols=181 Identities=12% Similarity=-0.007 Sum_probs=104.8
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhh---HHHHHHHHHhhcChhhHHHHHHHhccCCCCc-hhhHHHHHHH
Q 044770 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWST---LDVLIILYGYLAKGKDLERIWATVQELPNVR-SKSYVLAIEA 278 (464)
Q Consensus 203 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~ 278 (464)
+-.....+.+.|++++|...|+.+....... ... .-.+..++.+.++++.|...++.+.+..+.+ ...+...+.+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 3334455667899999999999998753322 222 2455677888899999999888887733332 2233333333
Q ss_pred hhc--cC---------------Ch---HHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc
Q 044770 279 FGR--IA---------------QV---SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338 (464)
Q Consensus 279 ~~~--~g---------------~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 338 (464)
.+. .+ +. ..|...|+.+.+ -|-...-..+|...+..+... .-
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~---la 175 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR---LA 175 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH---HH
Confidence 321 11 11 223333443333 222223334444444333321 00
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 339 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
..- -.+..-|.+.|.+..|..-++.+++. -.+..........++.+|.+.|..++|..+...+.
T Consensus 176 ~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~-----Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KYE-LSVAEYYTKRGAYVAVVNRVEQMLRD-----YPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHH-HHHHHHHHHcCchHHHHHHHHHHHHH-----CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 111 14455578888888888888888642 23333355566788889999999999888776554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0042 Score=52.22 Aligned_cols=87 Identities=14% Similarity=-0.018 Sum_probs=55.3
Q ss_pred HHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHH
Q 044770 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289 (464)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 289 (464)
..+.+++.+|+..|.+.++. .+-|...|..-..+|.+.|.++.|++-.+......+....+|..|..+|...|++++|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 45667777777777776664 33345555555666666666666666666655555555566666666666677777776
Q ss_pred HHHHHHHh
Q 044770 290 ELWLEMQS 297 (464)
Q Consensus 290 ~~~~~~~~ 297 (464)
+.|++..+
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 66666665
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.036 Score=45.85 Aligned_cols=129 Identities=12% Similarity=0.047 Sum_probs=62.0
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHH-----H
Q 044770 99 NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM-----K 173 (464)
Q Consensus 99 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~ 173 (464)
+.++..+.-.+.+.-...++++.++...+.+......|++.-.+.||.+.|...|++..+..-..|..+++.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34444444455555555566655555444455555555555556666666666665554432233333333222 2
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 174 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
.|.-.+++..|...|++..... ..|+..-|.-.-+..-.|+..+|++.++.|..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2333445555555555554432 11333333333333344555555555555554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.14 Score=45.23 Aligned_cols=107 Identities=21% Similarity=0.180 Sum_probs=80.2
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 350 (464)
+.+..+.-+...|+...|.++-.+..- |+..-|-..+.+|+..++|++-..+... +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv----~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKV----PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 455566777778888888777665543 7888899999999999999887776442 113477888899999
Q ss_pred hcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 044770 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404 (464)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (464)
+.|...+|..+...+ + +..-+..|.++|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~------------~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI------------P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC------------C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 999998888877664 1 135678888999999987774
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0019 Score=41.79 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=30.4
Q ss_pred HHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 276 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
...+...|++++|...|+.+.+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555556666666666655533 22455555555555666666666666655554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0015 Score=42.73 Aligned_cols=62 Identities=23% Similarity=0.281 Sum_probs=39.3
Q ss_pred ccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHH
Q 044770 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345 (464)
Q Consensus 281 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 345 (464)
..|++++|.+.|+.+.+.. +-+...+..+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 4567777777777776632 235666667777777777777777777777663 4554444433
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0019 Score=43.69 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc-HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 339 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
..+++.+...|...|++++|+..+++++++... .....|+ ..++..+...|...|++++|.+.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQ--LGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--TTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356788888899999999999999999877322 1112343 67789999999999999999999988764
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0058 Score=51.43 Aligned_cols=103 Identities=13% Similarity=0.076 Sum_probs=87.7
Q ss_pred HHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHH
Q 044770 244 LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323 (464)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 323 (464)
-+.+.+++.+|...|.......+.+..-|..-..+|.+.|.++.|.+-.+...... +.-..+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 35677899999999999999888888889999999999999999999988888732 22466899999999999999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHH
Q 044770 324 SGLLKEMSMNGCKPNAITYRHLALGC 349 (464)
Q Consensus 324 ~~~~~~m~~~g~~p~~~~~~~ll~~~ 349 (464)
++.|++.++ +.|+..+|-.=+...
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 999999988 789888876655543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.016 Score=50.96 Aligned_cols=136 Identities=12% Similarity=-0.021 Sum_probs=86.8
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHH----HhccccC-ChhhHHHHHHHHHhcCChhHHHHHHHHHH----hCCC-CccHH
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEM----QSVKQLK-ATEQYNSVISVYCKNGFIDKASGLLKEMS----MNGC-KPNAI 340 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~-~p~~~ 340 (464)
.|..|...|.-.|+++.|...-+.- .+.|... ....+..+..++.-.|+++.|.+.|+... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4566666777778888877654432 2222211 23467777888888888888888876643 2221 22344
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 341 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
+..++...|.-..+++.|+.++..-+.+... -....-....+.+|..+|...|..+.|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqe--L~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQE--LEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5556777777778888888888776654332 12233345677788888888888888887766544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.18 Score=44.38 Aligned_cols=283 Identities=15% Similarity=0.072 Sum_probs=155.8
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHH--hcCCCCcccHHHHHHHHHhCCCCCChhhH--HHHHHHHHccCChhH
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL--NSSPGRRKTIPNILRQMKADKVAPHVSTF--HILMKIEANDHNIEG 183 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~ 183 (464)
.|+-..|.++-.+-.+. +..|......++.+ ..-.|+++.|.+-|+.|.+ .|..... ..|.-.-.+.|..+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHH
Confidence 35555555554443321 23344444444433 3345667777777777664 2322211 122222334566666
Q ss_pred HHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHHHHHHHHHhcc-CCCChh--hHHHHHHHHH--h-hcChhhHHH
Q 044770 184 LMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEALEKSM-TGNNWS--TLDVLIILYG--Y-LAKGKDLER 256 (464)
Q Consensus 184 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~--~-~~~~~~a~~ 256 (464)
|..+-+..... .|. ...+...+...+..|+|+.|+++++.-.... +.++.. .-..|+.+-. . ..+...|..
T Consensus 173 Ar~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 173 ARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 66666655443 222 3455666666677777777777766544322 222221 1111221111 0 112333333
Q ss_pred HHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-CCC
Q 044770 257 IWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM-NGC 335 (464)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~ 335 (464)
.-....+..+.-...-..-..++.+.|+..++-.+++.+-+....|+ . ...|.+...-+.++.-+++... ..+
T Consensus 251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--i----a~lY~~ar~gdta~dRlkRa~~L~sl 324 (531)
T COG3898 251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--I----ALLYVRARSGDTALDRLKRAKKLESL 324 (531)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--H----HHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 33333232111111233445778899999999999999998654444 2 2344444444556655555443 125
Q ss_pred Ccc-HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHh-cCChhhHHHHHHHHHHcC
Q 044770 336 KPN-AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE-KGDVGNAENLFEELKKAN 411 (464)
Q Consensus 336 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~ 411 (464)
+|| ..+...+..+....|++..|..--+.+ ....|....|..|.+.-.. .|+-.++...+-+..+..
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa---------~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAA---------AREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHH---------hhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 554 456667777888889998888777766 5678888888877777654 499999999988887763
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.009 Score=44.36 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=49.4
Q ss_pred hhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHH-cCCCCcHHHHHHHHHHHHHcC
Q 044770 373 KVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK-ANYTKYTFVYNTLIKAYVKAK 430 (464)
Q Consensus 373 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g 430 (464)
......|+..+..+++.+|+..|++..|.++++...+ -+++.+..+|..|++=+...-
T Consensus 44 ~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 44 PSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 4567889999999999999999999999999998875 467777889999998666554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0023 Score=41.38 Aligned_cols=54 Identities=13% Similarity=0.034 Sum_probs=27.5
Q ss_pred HHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 044770 70 EFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRV 123 (464)
Q Consensus 70 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 123 (464)
..+...|++++|.+.|+.+....| +...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555544433 344555555555555555555555555544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.27 Score=43.76 Aligned_cols=261 Identities=9% Similarity=-0.077 Sum_probs=142.6
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhC
Q 044770 31 HSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKG 109 (464)
Q Consensus 31 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~ 109 (464)
..-..+.+..++..|+..+...++.. +-+..-|..-...+.-.|++++|.--.+.-....+ ....+...-+++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhH
Confidence 34456677888999999999998843 23344555555666666677766554433322211 1111222222222222
Q ss_pred cHHHHHHHH---------------HHHHHcCC-CCchhhHHHHH-HHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHH
Q 044770 110 VIKLSLEYM---------------KKMRVLGH-SISYLVFNRLI-ILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172 (464)
Q Consensus 110 ~~~~a~~~~---------------~~m~~~~~-~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (464)
+..+|.+.+ +....... +|...++..+- .++.-.|+.++|.++--..++.. ..+ .+...+
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n--~~al~v 208 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATN--AEALYV 208 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cch--hHHHHh
Confidence 222322222 22211111 23233343332 23556778888887776666532 122 233333
Q ss_pred HH--HHccCChhHHHHHHHHHHhCCCCCcHhHHHH---H----------HHHHHhcChhhHHHHHHHHHHhc---cCCCC
Q 044770 173 KI--EANDHNIEGLMKVYSDMKRSEVEPNEVSYCI---L----------ATAHAVARLYTVAETYVEALEKS---MTGNN 234 (464)
Q Consensus 173 ~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---l----------i~~~~~~~~~~~a~~~~~~~~~~---~~~~~ 234 (464)
++ +--.++.+.+...|++-+.. .|+...-.. . .+-..+.|.+..|.+.|.+.+.. +..++
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred cccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 33 33467778888888887765 344322211 1 12234678888888888877653 23344
Q ss_pred hhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhc
Q 044770 235 WSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298 (464)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 298 (464)
...|.....+..+.|+..+|+.-.+...+..+.-...+..-..++...++|++|.+-|+...+.
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555666677777777777776666655444444555555666677777777777776653
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.028 Score=47.70 Aligned_cols=100 Identities=8% Similarity=-0.044 Sum_probs=61.4
Q ss_pred CCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhh---CcHHHHHHHHHHHHHcCCCCchhhHH
Q 044770 59 RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDK---GVIKLSLEYMKKMRVLGHSISYLVFN 134 (464)
Q Consensus 59 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~ 134 (464)
+-|...|-.|...|...|+.+.|...|.+..+. +++...+..+..++... ....++..+|+++...+ +-|+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 346666777777777777777777777666555 44555555555444332 22456666777776653 33455555
Q ss_pred HHHHHhcCCCCcccHHHHHHHHHhC
Q 044770 135 RLIILNSSPGRRKTIPNILRQMKAD 159 (464)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (464)
-|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5666666777777777777777665
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.03 Score=47.53 Aligned_cols=101 Identities=12% Similarity=-0.076 Sum_probs=63.0
Q ss_pred CCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc---CChhHHHHHHHHHHhCCCCCcHhHH
Q 044770 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND---HNIEGLMKVYSDMKRSEVEPNEVSY 203 (464)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~ 203 (464)
+-|...|-.|...|...|+.+.|..-|....+.. +++...+..+..++... ....++..+|+++.... +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4466777777777777777777777777776643 44455555554444332 23446677777776653 2244555
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHhc
Q 044770 204 CILATAHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 204 ~~li~~~~~~~~~~~a~~~~~~~~~~ 229 (464)
..+...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55666677777777777777777765
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.014 Score=45.21 Aligned_cols=72 Identities=14% Similarity=0.032 Sum_probs=48.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHH-----hccCCCChhhHH
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE-----KSMTGNNWSTLD 239 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 239 (464)
+...++..+...|++++|..+.+.+.... +.|...|..+|.++...|+...|.+.|+.+. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44566777778888888888888887654 3467788888888888888888888888763 347777766543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.19 Score=41.45 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=27.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhH
Q 044770 345 LALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNA 400 (464)
Q Consensus 345 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 400 (464)
+..-|.+.|.+..|..-++.+++.. .+..........++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHH
Confidence 3445667777777777777775321 11111223445666777777766644
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.027 Score=48.17 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH----HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcH
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA----ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~ 381 (464)
.|...+..+.+.|++++|...|+.+++. -|+. ..+..+...+...|++++|...|+.+++.. .+.....
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~ 217 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAA 217 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchh
Confidence 3555554445668888888888888774 2332 456677777888888888888888885321 1122223
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 382 ETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
..+-.+...+...|+.++|..+|+++.+.
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445666777888888998888888875
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.3 Score=43.17 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=38.7
Q ss_pred HHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCC
Q 044770 240 VLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319 (464)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 319 (464)
..+.-+...|+...|.++.... .-++..-|-.-+.+|+..++|++-.++-.. ..++..|..++.+|.+.|+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~F---kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEF---KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHc---CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3344444455554444443333 112333344555555555555554443221 1233455555555555555
Q ss_pred hhHHHHHHHH
Q 044770 320 IDKASGLLKE 329 (464)
Q Consensus 320 ~~~a~~~~~~ 329 (464)
..+|..+...
T Consensus 253 ~~eA~~yI~k 262 (319)
T PF04840_consen 253 KKEASKYIPK 262 (319)
T ss_pred HHHHHHHHHh
Confidence 5555555544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0053 Score=40.27 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcC-ChHHHHHHHHHhH
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSN-LVEEGFKALELGM 366 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~ 366 (464)
.|..+...+...|++++|+..|.+.++. .| +...|..+..++...| ++++|+..++.++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 4444445555555555555555555442 22 3334444444444554 4555555555443
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.018 Score=49.24 Aligned_cols=95 Identities=11% Similarity=0.103 Sum_probs=54.9
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHcCCCCC-CchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc----hhHHHHHHHH
Q 044770 30 FHSINRLRKLQLNKRALEVMEWVIRERPYRP-KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN----ELLYNNLVIA 104 (464)
Q Consensus 30 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~li~~ 104 (464)
...+..+.+.|++++|...|+.+.+..+-.+ ....+-.+...|...|++++|...|+.+....|+ ...+-.+...
T Consensus 147 ~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~ 226 (263)
T PRK10803 147 NAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVI 226 (263)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHH
Confidence 3333333555777777777777766432111 0235556666666777777777777666554332 3344445555
Q ss_pred HHhhCcHHHHHHHHHHHHHc
Q 044770 105 CLDKGVIKLSLEYMKKMRVL 124 (464)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~ 124 (464)
+...|+.++|..+|+.+.+.
T Consensus 227 ~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 227 MQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66667777777777666654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0092 Score=39.09 Aligned_cols=63 Identities=17% Similarity=0.089 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcC-hhhHHHHHHHHHHh
Q 044770 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR-LYTVAETYVEALEK 228 (464)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~ 228 (464)
..+|..+...+...|++++|+..|++..+.. +-+...|..+..++.+.| ++++|+..+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455556666666666666666666665543 224455566666666666 56666666665544
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.01 Score=52.16 Aligned_cols=262 Identities=10% Similarity=-0.055 Sum_probs=155.7
Q ss_pred HHHHhhcchHHHHHHHHHHHHcCCCCCCc----hhHHHHHHHHHhhcChHHHHHHhhh-------cCCCCCchhHHHHHH
Q 044770 34 NRLRKLQLNKRALEVMEWVIRERPYRPKE----LDYSYLLEFTIKNHGISQGEKLFCC-------IPKDYQNELLYNNLV 102 (464)
Q Consensus 34 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~-------~~~~~~~~~~~~~li 102 (464)
..+++.|+.+..+.+|+..++ .|. -|. .+|..|.++|.-.+++++|.++-.. +-...-...+...|.
T Consensus 25 ERLck~gdcraGv~ff~aA~q-vGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQ-VGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHhccchhhhHHHHHHHHH-hcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 468899999999999999988 332 222 3466777777778888888876432 111111222333444
Q ss_pred HHHHhhCcHHHHHHHHHHH----HHcCC-CCchhhHHHHHHHhcCCCC--------------------cccHHHHHHHHH
Q 044770 103 IACLDKGVIKLSLEYMKKM----RVLGH-SISYLVFNRLIILNSSPGR--------------------RKTIPNILRQMK 157 (464)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m----~~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~ 157 (464)
..+-..|.+++|+-...+- .+.|- ......+-.+...|...|+ ++.|.++|.+-+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 4555566777765543222 22221 1123344456666665543 222334443322
Q ss_pred h----CCC-CCChhhHHHHHHHHHccCChhHHHHHHHHHH----hCCC-CCcHhHHHHHHHHHHhcChhhHHHHHHHHHH
Q 044770 158 A----DKV-APHVSTFHILMKIEANDHNIEGLMKVYSDMK----RSEV-EPNEVSYCILATAHAVARLYTVAETYVEALE 227 (464)
Q Consensus 158 ~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 227 (464)
+ .|- -.....|..|.+.|--.|+++.|+...+.-. +-|- ......+..+.+++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1 110 0112345556666666788898887655432 2231 1234567788888999999999999888754
Q ss_pred hc----c-CCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc------CCCCchhhHHHHHHHhhccCChHHHHHHHHHHH
Q 044770 228 KS----M-TGNNWSTLDVLIILYGYLAKGKDLERIWATVQE------LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296 (464)
Q Consensus 228 ~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 296 (464)
.. | -.......-++.+.|.-..+++.|+.++.+-.. ........+-+|..+|...|..++|+.+.+.-.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 32 2 122345556677777777888888887765322 222334467788999999999999888776654
Q ss_pred h
Q 044770 297 S 297 (464)
Q Consensus 297 ~ 297 (464)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 3
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.54 Score=44.85 Aligned_cols=117 Identities=15% Similarity=0.086 Sum_probs=59.8
Q ss_pred CCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchh------------HHHHHHHHHHhhCcHHHHHHHHHHHHHcCC
Q 044770 59 RPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNEL------------LYNNLVIACLDKGVIKLSLEYMKKMRVLGH 126 (464)
Q Consensus 59 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 126 (464)
.|-+..|..+.......-.++-|...|-+...- +... .-.+=+.+| -|++++|.++|-+|-++++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh
Confidence 356667777777666666677776666554332 1111 111112222 3677777777766665432
Q ss_pred CCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCC----ChhhHHHHHHHHHccCChhHHHHHHHH
Q 044770 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAP----HVSTFHILMKIEANDHNIEGLMKVYSD 190 (464)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (464)
.+..+.+.|+|-.+.++++. .|-.. -...|+.+.+.+.....|++|.++|..
T Consensus 766 ---------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 766 ---------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred ---------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23444455555444444322 11111 123455566666666666666655544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.022 Score=47.53 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=76.4
Q ss_pred HHHHHhhhcCCCCCchhHHHHHHHHHHhh-----CcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHH
Q 044770 80 QGEKLFCCIPKDYQNELLYNNLVIACLDK-----GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154 (464)
Q Consensus 80 ~a~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 154 (464)
.....|..+.....+..+|-..+..+... +.++-....+..|.+-|+.-|..+|+.|++.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk---------- 121 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK---------- 121 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------
Confidence 34455666654445667777777666543 566777777888999999999999999988765432
Q ss_pred HHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChh
Q 044770 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLY 216 (464)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 216 (464)
+.|....-..+++ |- .+-+-+++++++|...|+.||..+-..+++++.+.+..
T Consensus 122 ------fiP~nvfQ~~F~H-YP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 122 ------FIPQNVFQKVFLH-YP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred ------cccHHHHHHHHhh-Cc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1222221111111 21 22344677888888888888888888888888776654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.1 Score=38.28 Aligned_cols=66 Identities=12% Similarity=-0.043 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 044770 340 ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413 (464)
Q Consensus 340 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 413 (464)
..+...+......|+-+.-.++..... + .-.+++...-.+..+|.+.|+..++.+++.+..+.|++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~-------k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELK-------K-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-------h-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 334455566667777777777776662 1 44556666667778888888888888888888877753
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.49 Score=41.86 Aligned_cols=304 Identities=13% Similarity=0.018 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHcCCCCCCchhHHHHHHHHH--hhcChHHHHHHhhhcCCC-CCchhHHHHHHH--HHHhhCcHHHHHHH
Q 044770 43 KRALEVMEWVIRERPYRPKELDYSYLLEFTI--KNHGISQGEKLFCCIPKD-YQNELLYNNLVI--ACLDKGVIKLSLEY 117 (464)
Q Consensus 43 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~--~~~~~~~~~~a~~~ 117 (464)
..+.+.|..-.+.. .|..|-.++. -.|+-..|.++-.+..+. ..|......++. +-.-.|+++.|.+-
T Consensus 70 ~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~k 142 (531)
T COG3898 70 YTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKK 142 (531)
T ss_pred HHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHH
Confidence 44555555544422 2344444333 345555666555544322 223333333332 23335666777777
Q ss_pred HHHHHHcCCCCchh--hHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 044770 118 MKKMRVLGHSISYL--VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE 195 (464)
Q Consensus 118 ~~~m~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 195 (464)
|+.|... |... -...|.-..-+.|+.+.|..+-+..-... +.-...+...+...+..|+|+.|+++.+.-.+..
T Consensus 143 feAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~ 218 (531)
T COG3898 143 FEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK 218 (531)
T ss_pred HHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 7666642 1111 12222222335566666666555554332 2223455566666666677777776666554433
Q ss_pred -CCCcHhH--HHHHHHHHH---hcChhhHHHHHHHHHHhccCCCChh-hHHHHHHHHHhhcChhhHHHHHHHhcc-CCCC
Q 044770 196 -VEPNEVS--YCILATAHA---VARLYTVAETYVEALEKSMTGNNWS-TLDVLIILYGYLAKGKDLERIWATVQE-LPNV 267 (464)
Q Consensus 196 -~~p~~~~--~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~ 267 (464)
+.++..- -..|+.+-. -..+...|...-.+..+ ..|+.. .-..-..++.+.|+..++-.+++.+-+ .+.+
T Consensus 219 vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 219 VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 3333321 112222211 11233344444333332 233321 112233556666666666666665544 3333
Q ss_pred chhhHHHHHHHhhccCChHHHHHHHHHHHhc-cccC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHH
Q 044770 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSV-KQLK-ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHL 345 (464)
Q Consensus 268 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 345 (464)
+. ..+..+.+.|+... .=+++.... ..+| +..+.-.+..+-...|++..|..--+.... ..|....|..+
T Consensus 297 ~i----a~lY~~ar~gdta~--dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLl 368 (531)
T COG3898 297 DI----ALLYVRARSGDTAL--DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLL 368 (531)
T ss_pred HH----HHHHHHhcCCCcHH--HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHH
Confidence 32 22233334443321 112111110 1112 334444455555556666655554444443 45555555555
Q ss_pred HHHH-HhcCChHHHHHHHHHhHH
Q 044770 346 ALGC-FKSNLVEEGFKALELGMK 367 (464)
Q Consensus 346 l~~~-~~~~~~~~a~~~~~~~~~ 367 (464)
...- ...|+-.++.+.+.+.++
T Consensus 369 AdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 369 ADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHhhccCchHHHHHHHHHHhc
Confidence 5543 333666666666666654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.059 Score=50.45 Aligned_cols=86 Identities=14% Similarity=0.005 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHH-H
Q 044770 340 ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF-V 418 (464)
Q Consensus 340 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~ 418 (464)
.+...+...+.+...+..|-++|..+- .. .++++.....++|.+|..+-+...+. .||+. -
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~g---------D~-------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~p 809 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMG---------DL-------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMP 809 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhc---------cH-------HHHhhheeecccchHhHhhhhhCccc--cccccch
Confidence 344444444555566666667776661 11 14556666667777776666655542 23333 1
Q ss_pred ----------HHHHHHHHHHcCCC--hhHHHHHHHhC
Q 044770 419 ----------YNTLIKAYVKAKIN--DPNLLRRMILG 443 (464)
Q Consensus 419 ----------~~~li~~~~~~g~~--a~~~~~~m~~~ 443 (464)
|...-++|.+.|+. |.++++++...
T Consensus 810 yaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 810 YAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 23334566666653 66666666544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.39 Score=40.86 Aligned_cols=164 Identities=9% Similarity=0.048 Sum_probs=95.5
Q ss_pred hhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC
Q 044770 12 SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD 91 (464)
Q Consensus 12 ~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 91 (464)
+.+++|...-.++....-..-...+...|++.+|..+|+......+ -+...--.+..+|...|+.+.|..++..++..
T Consensus 120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 3566677765555555555666677788999999999998887442 23556677788889999999999999998875
Q ss_pred CCch--hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhC--CCCCChhh
Q 044770 92 YQNE--LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD--KVAPHVST 167 (464)
Q Consensus 92 ~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 167 (464)
..+. .....-|..+.+.....+...+-...-.. +-|...-..+...+...|+.+.|.+.+-.+.+. | .-|...
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~-~~d~~~ 274 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG-FEDGEA 274 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-ccCcHH
Confidence 2221 11112233333333333333333333221 224555555666666667666666655555432 2 233334
Q ss_pred HHHHHHHHHccCC
Q 044770 168 FHILMKIEANDHN 180 (464)
Q Consensus 168 ~~~l~~~~~~~~~ 180 (464)
-..|+..+.-.|.
T Consensus 275 Rk~lle~f~~~g~ 287 (304)
T COG3118 275 RKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhcCC
Confidence 4445555444443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.016 Score=39.08 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-Ccc-HHHHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 305 EQYNSVISVYCKNGFIDKASGLLKEMSMN----GC-KPN-AITYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 305 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
.+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+...+...|++++|++++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35667777777777777777777766542 11 122 456677777788888888888888877543
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.062 Score=39.97 Aligned_cols=53 Identities=8% Similarity=-0.137 Sum_probs=36.3
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHh
Q 044770 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393 (464)
Q Consensus 335 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 393 (464)
..|+..+..+++.+|+..+++..|.++.+... ...+++.+..+|..|+.-...
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs------~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFS------RKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH------HHcCCCCCHHHHHHHHHHHHH
Confidence 55777777777777777777777777777774 344566666777766665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.024 Score=37.62 Aligned_cols=56 Identities=11% Similarity=0.000 Sum_probs=38.0
Q ss_pred HHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044770 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333 (464)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 333 (464)
..|.+.++++.|.++++.+...+ +.++..|.....++...|++++|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35566777777777777777643 335666666777777777777777777777763
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.013 Score=38.84 Aligned_cols=22 Identities=18% Similarity=-0.093 Sum_probs=8.9
Q ss_pred HHHHHHhcChhhHHHHHHHHHH
Q 044770 206 LATAHAVARLYTVAETYVEALE 227 (464)
Q Consensus 206 li~~~~~~~~~~~a~~~~~~~~ 227 (464)
...++.+.|++++|...++...
T Consensus 35 ~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 35 RARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 3333444444444444444433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.12 Score=46.91 Aligned_cols=64 Identities=11% Similarity=-0.031 Sum_probs=39.7
Q ss_pred chhhHHHHHHHhhccCChHHHHHHHHHHHhccccCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044770 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT----EQYNSVISVYCKNGFIDKASGLLKEMSMN 333 (464)
Q Consensus 268 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 333 (464)
+...++.+..+|...|++++|...|++..+.. |+. .+|..+..+|...|+.++|+..+++.++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34456666666666677777777666666532 332 23666666666666666666666666653
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.57 Score=40.83 Aligned_cols=225 Identities=13% Similarity=0.074 Sum_probs=120.0
Q ss_pred HccCChhHHHHHHHHHHhCC--CCCcH------hHHHHHHHHHHhcC-hhhHHHHHHHHHHhc--------cCCCC----
Q 044770 176 ANDHNIEGLMKVYSDMKRSE--VEPNE------VSYCILATAHAVAR-LYTVAETYVEALEKS--------MTGNN---- 234 (464)
Q Consensus 176 ~~~~~~~~a~~~~~~m~~~~--~~p~~------~~~~~li~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~---- 234 (464)
.+.|+.+.|..++.+..... ..|+. ..|+.-. ...+.+ +++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~-~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGK-SLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHH-HHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 45677777777777665432 22221 1122222 223445 777777776665332 12222
Q ss_pred -hhhHHHHHHHHHhhcChh---hHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHH
Q 044770 235 -WSTLDVLIILYGYLAKGK---DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310 (464)
Q Consensus 235 -~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 310 (464)
..++..++.++...+..+ .|.++++.+....+..+.++..-+..+.+.++.+.+.+++.+|... +......+..+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~ 161 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence 245566777777777654 4455566665555555555666677777788999999999999884 33233456666
Q ss_pred HHHHHh--cCChhHHHHHHHHHHhCCCCccHH-HHHH-HHHH---HHhcCC------hHHHHHHHHHhHHHHhhhhhcCC
Q 044770 311 ISVYCK--NGFIDKASGLLKEMSMNGCKPNAI-TYRH-LALG---CFKSNL------VEEGFKALELGMKLITTKKVRSS 377 (464)
Q Consensus 311 i~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~-~~~~-ll~~---~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~ 377 (464)
+..+.. ......+...+..+....+.|... .... ++.. ....++ .+...++++... ...+.
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~------~~~~~ 235 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVE------HSLGK 235 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHH------HHhcC
Confidence 655522 233456777777776655565553 1111 1111 122222 333334444321 11222
Q ss_pred CCcHHHHHHH-------HHHHHhcCChhhHHHHHHHHH
Q 044770 378 TPWLETTLSI-------IEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 378 ~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~ 408 (464)
+.+..+-.++ ...+.+.+++++|.+.|+-..
T Consensus 236 ~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 236 QLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3333332222 233556889999999887544
|
It is also involved in sporulation []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.035 Score=42.96 Aligned_cols=75 Identities=16% Similarity=0.098 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHH
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~ 383 (464)
+...++..+...|++++|..+.+.+.... +.|...|..+|.++...|+...|.++|+.+.+... ...|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~--~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR--EELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH--HHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH--HHhCcCcCHHH
Confidence 45556666677777777777777777642 22566777777777777777777777777755433 34577776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.83 Score=41.37 Aligned_cols=259 Identities=10% Similarity=0.064 Sum_probs=142.4
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCCCc----hhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHH--HHhh
Q 044770 35 RLRKLQLNKRALEVMEWVIRERPYRPKE----LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIA--CLDK 108 (464)
Q Consensus 35 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~--~~~~ 108 (464)
.+.+++++.+|..+|..+.+...-.|.. ..-+.++++|.- .+++.....+....+..| ...|-.+..+ +-+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHh
Confidence 4558899999999999998743212211 123456666653 456666666665555434 3344444443 3467
Q ss_pred CcHHHHHHHHHHHHHc--CCCC------------chhhHHHHHHHhcCCCCcccHHHHHHHHHhC----CCCCChhhHHH
Q 044770 109 GVIKLSLEYMKKMRVL--GHSI------------SYLVFNRLIILNSSPGRRKTIPNILRQMKAD----KVAPHVSTFHI 170 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 170 (464)
+++.+|++.+..-..+ +..| |...=+..+..+...|++.++..+++++... ...-+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8899999988776654 3222 2222345667788999999999999888764 33478888888
Q ss_pred HHHHHHccC--------Ch-------hHHHHHHHHHHhC------CCCCcHhHHHHHHHHHHhc--ChhhHHHHHHHHHH
Q 044770 171 LMKIEANDH--------NI-------EGLMKVYSDMKRS------EVEPNEVSYCILATAHAVA--RLYTVAETYVEALE 227 (464)
Q Consensus 171 l~~~~~~~~--------~~-------~~a~~~~~~m~~~------~~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~~~ 227 (464)
++-.+.+.- .. +-+.-+..+|... .+.|.......++....-. .+..--+++++.-.
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 665555421 11 1122222222211 1233333333333332211 11222333444334
Q ss_pred hccCCCChh-hHHHHHHHHHhhcChhhHHHHHHHhccC-----CCCchhhHHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 228 KSMTGNNWS-TLDVLIILYGYLAKGKDLERIWATVQEL-----PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 228 ~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
..-+.|+-. +...+...+.. +.+++..+.+.+... ...-..+|..++....+.++...|.+.+.-+..
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 444455432 23333333333 555665555554432 111223577777888888888999888887765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.91 Score=40.77 Aligned_cols=173 Identities=12% Similarity=0.018 Sum_probs=108.5
Q ss_pred chhhHHHHHHHhhccCChHHHHHHHHHHHhcc---ccCChhhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCccHHH
Q 044770 268 RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK---QLKATEQYNSVISVYCK---NGFIDKASGLLKEMSMNGCKPNAIT 341 (464)
Q Consensus 268 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~ 341 (464)
+..+...++-+|....+++...++.+.+...- +.-....--...-++.+ .|+.++|++++..+....-.+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34445567778999999999999999998741 11122222234456667 8999999999999776667788888
Q ss_pred HHHHHHHHHh---------cCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChh----hHHHHH---H
Q 044770 342 YRHLALGCFK---------SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVG----NAENLF---E 405 (464)
Q Consensus 342 ~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~ 405 (464)
|..+...|-. ....++|+..|.+. ..+.|+...--.++..+...|... +..++- .
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg---------Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~ 290 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKG---------FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLS 290 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHH---------HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 8887766532 22466777777766 445565544223333333344322 222332 1
Q ss_pred -HHHHcCC-C--CcHHHHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCHH
Q 044770 406 -ELKKANY-T--KYTFVYNTLIKAYVKAKIN--DPNLLRRMILGGARPDAE 450 (464)
Q Consensus 406 -~m~~~~~-~--p~~~~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~~ 450 (464)
.+.+.|. . .+-..+.+++.++.-.|+. |.+..+.|.+.. +|..+
T Consensus 291 ~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~W~ 340 (374)
T PF13281_consen 291 SLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPAWE 340 (374)
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccchh
Confidence 1223332 2 2333667889999999985 889999999774 55544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.2 Score=42.05 Aligned_cols=249 Identities=9% Similarity=-0.042 Sum_probs=140.6
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHhccCCCCh------hhHHHHHHHHHh----hcChhhHHHHHHHhccCCCCchhhH
Q 044770 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNW------STLDVLIILYGY----LAKGKDLERIWATVQELPNVRSKSY 272 (464)
Q Consensus 203 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 272 (464)
+..++....=.|+-+.+++.+.+..+.+---.+ -+|..++..++. ..+.+.+.++++.+....|....-.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 334455555568888888888776553221122 123333333333 3456778888888888766655444
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhcc---ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHH-
Q 044770 273 VLAIEAFGRIAQVSRAEELWLEMQSVK---QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG- 348 (464)
Q Consensus 273 ~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~- 348 (464)
-.-.+.+...|++++|.+.|+...... .+.....+--+...+.-..+|++|.+.|..+.+.. ..+..+|.-+..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 445667778999999999999755311 11123345556677888999999999999999853 3345555554444
Q ss_pred HHhcCCh-------HHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHH
Q 044770 349 CFKSNLV-------EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421 (464)
Q Consensus 349 ~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 421 (464)
+...++. ++|..+|.++-.+...... ...|....-..-+.-|.+.+. ..+.+ ..++.| ..-...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~g-k~lp~E~Fv~RK~~~~~~~~~----~~~~d---~~~~~p-~~El~y 420 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKLKQKKAG-KSLPLEKFVIRKAQKYEKQAK----VDLVD---AILVLP-ALELMY 420 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHHHhhhcc-CCCChHHHHHHHHHHHHhcCC----Ccchh---hhhcCH-HHHHHH
Confidence 3456777 8888888888655433222 233332222233333333322 11111 111111 222333
Q ss_pred HHHHHHHcCCChh--HHHHHHHhC---CCCCCHHHHHHHHHHHHh
Q 044770 422 LIKAYVKAKINDP--NLLRRMILG---GARPDAETYSLLKLAEQF 461 (464)
Q Consensus 422 li~~~~~~g~~a~--~~~~~m~~~---~~~p~~~t~~~L~~~~~~ 461 (464)
+-+++.+.++..+ ..+...... ...+|......|+.+..+
T Consensus 421 ~WNg~~~~~~~~l~~~~~~~l~~~~~~~~~~De~~l~~lL~g~~l 465 (468)
T PF10300_consen 421 FWNGFPRMPKEELEIKSLLELEESKNSEEDPDERALRHLLKGACL 465 (468)
T ss_pred HHhccccCChHHHHHHHHHHHHhcccccCCccHHHHHHHHHHHHh
Confidence 4456666665532 233443332 356888888766666544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.61 Score=38.41 Aligned_cols=167 Identities=14% Similarity=0.101 Sum_probs=84.9
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCC--CcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhc
Q 044770 172 MKIEANDHNIEGLMKVYSDMKRSEVE--PNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA 249 (464)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (464)
...+...|++++|.+.|+.+...-.. --....-.++.++.+.|+++.|...+++..+.-..-...-+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 33455667777777777777654211 1123344556666677777777777777665422211122222222222111
Q ss_pred C-------------hhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHh
Q 044770 250 K-------------GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316 (464)
Q Consensus 250 ~-------------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 316 (464)
. ...|... +..++.-|=......+|...+..+.+.- ...--.+..-|.+
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~--------------~~~li~~yP~S~y~~~A~~~l~~l~~~l----a~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEE--------------FEELIKRYPNSEYAEEAKKRLAELRNRL----AEHELYIARFYYK 153 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHH--------------HHHHHHH-TTSTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHC
T ss_pred hCccchhcccChHHHHHHHHH--------------HHHHHHHCcCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 1 1122222 4444555555555566655555544310 0012235667888
Q ss_pred cCChhHHHHHHHHHHhCCCCccH----HHHHHHHHHHHhcCChHHH
Q 044770 317 NGFIDKASGLLKEMSMNGCKPNA----ITYRHLALGCFKSNLVEEG 358 (464)
Q Consensus 317 ~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a 358 (464)
.|.+..|..-++.+++. -|+. .....++.++.+.|..+.+
T Consensus 154 ~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp TT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 88899998888888874 2332 3456677778887776644
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.082 Score=49.73 Aligned_cols=161 Identities=17% Similarity=0.105 Sum_probs=103.7
Q ss_pred hHHHHHHHHHhhcChHHHHHHhhhcCCCCCc---------hhHHHHHHHHHHh----hCcHHHHHHHHHHHHHcCCCCch
Q 044770 64 DYSYLLEFTIKNHGISQGEKLFCCIPKDYQN---------ELLYNNLVIACLD----KGVIKLSLEYMKKMRVLGHSISY 130 (464)
Q Consensus 64 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~ 130 (464)
....++...+=.|+-+.+++.+.+..+. .+ ...|+..+..++. ....+.|.++++.+.+. -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCc
Confidence 3456777777777777777777765543 11 1235555544443 35677888888888875 4565
Q ss_pred hhHHHH-HHHhcCCCCcccHHHHHHHHHhC--CC-CCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHH
Q 044770 131 LVFNRL-IILNSSPGRRKTIPNILRQMKAD--KV-APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206 (464)
Q Consensus 131 ~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 206 (464)
..|... .+.+...|++++|.+.|+..... .. +.....+--+...+.-.++|++|.+.|..+.+.. .-+..+|..+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 555433 45567788888888888876531 10 1223345556777888999999999999998753 2344455544
Q ss_pred HHH-HHhcChh-------hHHHHHHHHHHh
Q 044770 207 ATA-HAVARLY-------TVAETYVEALEK 228 (464)
Q Consensus 207 i~~-~~~~~~~-------~~a~~~~~~~~~ 228 (464)
..+ +...++. ++|.++|.++..
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 444 3456666 888888888744
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.75 Score=38.41 Aligned_cols=140 Identities=11% Similarity=0.025 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc-CCCCchhhHH-----HH
Q 044770 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE-LPNVRSKSYV-----LA 275 (464)
Q Consensus 202 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~-----~l 275 (464)
..+.++.++.-.|.+.-....+.+..+...+.++.....+++.-.+.|+.+.|...++.+.+ ....+...++ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34455566666777777788888887776667777778888888888888888888887665 2222332232 23
Q ss_pred HHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHH
Q 044770 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRH 344 (464)
Q Consensus 276 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 344 (464)
...|.-.+++..|...+.++.... +.|+..-|.-.-+..-.|+...|++.+..|.+. .|.+.+-++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 345666788888888888887743 345666666555666678899999999999884 455544443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.32 Score=37.62 Aligned_cols=85 Identities=11% Similarity=-0.047 Sum_probs=34.5
Q ss_pred hcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHH
Q 044770 212 VARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEEL 291 (464)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 291 (464)
..|++++|..+|.-+.-.++ -+..-+..|..++...++++.|...+.........++..+-....+|...|+.+.|+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 44555555555554433221 12222333333344444444444444433322222222233344444444555555554
Q ss_pred HHHHHh
Q 044770 292 WLEMQS 297 (464)
Q Consensus 292 ~~~~~~ 297 (464)
|+...+
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.22 Score=38.54 Aligned_cols=85 Identities=9% Similarity=0.001 Sum_probs=38.5
Q ss_pred CCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHH
Q 044770 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221 (464)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 221 (464)
..|++++|..+|.-+.-.+ +-+..-|..|..++-..+++++|...|......+. -|+..+-....++...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 4455555555555554433 22333344444444445555555555544433221 122233334444555555555555
Q ss_pred HHHHHHh
Q 044770 222 YVEALEK 228 (464)
Q Consensus 222 ~~~~~~~ 228 (464)
.|+....
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5554443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.15 Score=46.29 Aligned_cols=61 Identities=11% Similarity=-0.063 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHhhcChHHHHHHhhhcCCCCCch----hHHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 044770 63 LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE----LLYNNLVIACLDKGVIKLSLEYMKKMRV 123 (464)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~ 123 (464)
..++.+...|...|++++|...|++.....|+. .+|..+..+|...|+.++|++.+++.++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555544443332 2355555555555555555555555554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.84 E-value=1.2 Score=39.19 Aligned_cols=167 Identities=16% Similarity=0.104 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHhccCCCCch-----hhHHHHHHHhhccCChHHHHHHHHHHHhcc-----ccCChhhH
Q 044770 238 LDVLIILYGYLAKGKDLERIWATVQELPNVRS-----KSYVLAIEAFGRIAQVSRAEELWLEMQSVK-----QLKATEQY 307 (464)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~ 307 (464)
|..+.+++-+..+..+++.+-+.-...+.... ....++..++...+.++++++.|+...... .......|
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 33344444444444444444443333221111 123345566666677777777777654321 11123457
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh----CCCCccHH-----HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCC
Q 044770 308 NSVISVYCKNGFIDKASGLLKEMSM----NGCKPNAI-----TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST 378 (464)
Q Consensus 308 ~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 378 (464)
..+...|.+..++++|.-+.....+ -++.--.. ....+.-++-..|.+..|.+.-+++.++... .|..
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~---~Gdr 242 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ---HGDR 242 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH---hCCh
Confidence 7777777777777777665554432 12211111 1223344566677777777777777665432 3333
Q ss_pred C-cHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 044770 379 P-WLETTLSIIEIFAEKGDVGNAENLFEEL 407 (464)
Q Consensus 379 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (464)
+ .......+.+.|-..|+.+.|..-|+..
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 3 2333456777777777777776666543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.5 Score=39.81 Aligned_cols=147 Identities=13% Similarity=0.039 Sum_probs=105.9
Q ss_pred HhHHHHHHHHHHhcChhhHHHHHHHHHHhcc-CCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHH
Q 044770 200 EVSYCILATAHAVARLYTVAETYVEALEKSM-TGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEA 278 (464)
Q Consensus 200 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (464)
...|...++...+..-.+.|..+|-+..+.+ ..+++..+++++..++ .|+...|.++|+.-....+.++.-.+-.+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4567777777778888888999999988887 6677888888887664 5778888888887655544444444556667
Q ss_pred hhccCChHHHHHHHHHHHhccccCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 044770 279 FGRIAQVSRAEELWLEMQSVKQLKA--TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350 (464)
Q Consensus 279 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 350 (464)
+...++-+.|..+|+....+ +..+ ...|..+|.--..-|+...+..+=++|.+ +.|...+...+..-|.
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 77888889999999854431 1112 34788888888888999888888888877 4566655555554444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.15 Score=42.87 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHHhc-----CChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcC----------------C
Q 044770 338 NAITYRHLALGCFKS-----NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKG----------------D 396 (464)
Q Consensus 338 ~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----------------~ 396 (464)
|..+|...+..|... +.++=-...+..| .+.|+.-|..+|+.|++.+-+.. +
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m-------~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~Q 138 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYM-------KEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQ 138 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH-------HHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchh
Confidence 444444444444322 3333334445555 66788888888888887765432 2
Q ss_pred hhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCChhHH
Q 044770 397 VGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPNL 436 (464)
Q Consensus 397 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~a~~~ 436 (464)
-+-+..++++|...|+.||-.+-..|+++|.+.+-.-.++
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~ 178 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKV 178 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHH
Confidence 2457889999999999999999999999999887654433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.41 Score=37.11 Aligned_cols=54 Identities=7% Similarity=0.046 Sum_probs=26.6
Q ss_pred cCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 044770 141 SSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 194 (464)
...|.++.+....+-+-..+-+.-...-..|.-+-.+.|++..|.+.|.++...
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 345555555555555443332222333344444555566666666666555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.23 Score=46.15 Aligned_cols=160 Identities=12% Similarity=-0.036 Sum_probs=92.8
Q ss_pred HHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHH
Q 044770 34 NRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKL 113 (464)
Q Consensus 34 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 113 (464)
+...-+++++.+.++.+.-.--..+ | ....+.++..+-+.|..+.|+.+-+.-.. -.....+.|+++.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~----------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDH----------RFELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH----------HHHHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHH----------HhHHHHhcCCHHH
Confidence 4444567788877766522110112 2 44577788888888888888877554321 2334456777777
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 044770 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 114 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 193 (464)
|.++.++ .++...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+.-.++.+....
T Consensus 337 A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 7766422 23566788888888888888888888877653 45666677777887777777776666
Q ss_pred CCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHH
Q 044770 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 194 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
+|- ++....++.-.|+.++..+++.+.
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 552 344455555667777777666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.53 Score=43.81 Aligned_cols=158 Identities=15% Similarity=0.070 Sum_probs=94.8
Q ss_pred HHHHccCChhHHHHHHH--HHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcC
Q 044770 173 KIEANDHNIEGLMKVYS--DMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250 (464)
Q Consensus 173 ~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (464)
....-.++++++.+..+ ++.. .+ +..-.+.++.-+-+.|.++.|+.+...-. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 33445677777666664 1111 11 23446667777777888888877643321 12334556777
Q ss_pred hhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 044770 251 GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEM 330 (464)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 330 (464)
.+.|.++.+... +...|..|.+...+.|+++-|++.|.+..+ |..++-.|.-.|+.+.-.++.+..
T Consensus 334 L~~A~~~a~~~~-----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 334 LDIALEIAKELD-----DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHHCCCCS-----THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-----cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 777766544332 445688888888888999988888887765 677777788888887777777776
Q ss_pred HhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 331 SMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 331 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
...|- ++....++.-.|+.++..+++...
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 66542 445555666678888887777655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.28 E-value=2.2 Score=38.73 Aligned_cols=141 Identities=14% Similarity=0.116 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHH
Q 044770 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNG-CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383 (464)
Q Consensus 305 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~ 383 (464)
..|...+..-.+..-.+.|..+|-+..+.| +.++...++.++..++ .|+...|..+|+.-+ ..-||...
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl---------~~f~d~~~ 467 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGL---------LKFPDSTL 467 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHH---------HhCCCchH
Confidence 456667777777778899999999999988 6678888888887654 578889999998764 22333333
Q ss_pred -HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc--HHHHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCHHHHHHHHHH
Q 044770 384 -TLSIIEIFAEKGDVGNAENLFEELKKANYTKY--TFVYNTLIKAYVKAKIN--DPNLLRRMILGGARPDAETYSLLKLA 458 (464)
Q Consensus 384 -~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~L~~~ 458 (464)
-+-.+..+.+.++-+.|..+|+....+ +..+ ...|..+|.-=..-|+- +..+=++|.. +-|-..+..++..-
T Consensus 468 y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sr 544 (660)
T COG5107 468 YKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSR 544 (660)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHH
Confidence 245667778889999999999955432 1122 45899999888888874 5555556654 34555555444433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.24 E-value=1.5 Score=36.39 Aligned_cols=25 Identities=8% Similarity=-0.027 Sum_probs=12.7
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHHH
Q 044770 29 IFHSINRLRKLQLNKRALEVMEWVI 53 (464)
Q Consensus 29 ~~~~l~~~~~~~~~~~A~~~~~~~~ 53 (464)
|.....+|....++++|...+....
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4444445555555555555554444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.35 Score=36.45 Aligned_cols=85 Identities=9% Similarity=-0.003 Sum_probs=57.7
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC-CchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc--hhHHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRP-KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN--ELLYNNL 101 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~l 101 (464)
++..+..-.....+.|++++|.+.|+.+..+.+..+ .....-.++.+|.+.+++++|...+++..+..|+ ...|-..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 444555666677788899999999998887665543 2344556777888888888888888887766443 2445555
Q ss_pred HHHHHhhC
Q 044770 102 VIACLDKG 109 (464)
Q Consensus 102 i~~~~~~~ 109 (464)
+.+++.-.
T Consensus 89 ~~gL~~~~ 96 (142)
T PF13512_consen 89 MRGLSYYE 96 (142)
T ss_pred HHHHHHHH
Confidence 55554433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.14 E-value=3.4 Score=40.12 Aligned_cols=271 Identities=12% Similarity=0.071 Sum_probs=148.8
Q ss_pred CchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC------chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHH
Q 044770 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ------NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFN 134 (464)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 134 (464)
...+|.....-...+|+++-|..+++.=+.... +..-+...+.-+.+.|+.+....++-.+...- +...|.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~ 582 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLF 582 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHH
Confidence 445788888888889999999999887665411 33456677888889999999988888777641 222232
Q ss_pred HHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHH-HHHHHhC-CCCCcHhHHHHHHHHHHh
Q 044770 135 RLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV-YSDMKRS-EVEPNEVSYCILATAHAV 212 (464)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~m~~~-~~~p~~~~~~~li~~~~~ 212 (464)
..+ .+...|..+|.+..+.. |.. .+-+.|-...+...+-.+ ++..... -+.+-........+.+.+
T Consensus 583 ~~l------~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~ 650 (829)
T KOG2280|consen 583 MTL------RNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAK 650 (829)
T ss_pred HHH------HhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhh
Confidence 222 23456666666665421 111 111222222222221111 1110000 011222222333344444
Q ss_pred cChhh----------HHHHHHHHHHh-ccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc
Q 044770 213 ARLYT----------VAETYVEALEK-SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281 (464)
Q Consensus 213 ~~~~~----------~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (464)
..... +-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-...+- ++...|-.-+.+++.
T Consensus 651 sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki---pdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 651 SKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI---PDKRLWWLKLTALAD 727 (829)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC---cchhhHHHHHHHHHh
Confidence 33311 11222222221 12233344555556666777777777777665532 333445566777788
Q ss_pred cCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 044770 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 361 (464)
.+++++-+++-+... ++..|.-.+.+|.+.|+.++|..++.+... .. -...+|.+.|++.+|.+.
T Consensus 728 ~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHH
Confidence 888777665544333 244677788888888888888888876443 22 345567777777777665
Q ss_pred HHH
Q 044770 362 LEL 364 (464)
Q Consensus 362 ~~~ 364 (464)
--+
T Consensus 793 A~~ 795 (829)
T KOG2280|consen 793 AAE 795 (829)
T ss_pred HHH
Confidence 443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.13 E-value=3 Score=42.83 Aligned_cols=55 Identities=11% Similarity=-0.022 Sum_probs=24.0
Q ss_pred HHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHH
Q 044770 242 IILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296 (464)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 296 (464)
+.+|...|+|.++..+..++......-..+-..|+.-+...+++-+|-++..+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 3344445555555554444433222222222344444445555555555544443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.49 Score=34.77 Aligned_cols=94 Identities=16% Similarity=0.108 Sum_probs=58.2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHH
Q 044770 313 VYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFA 392 (464)
Q Consensus 313 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 392 (464)
+++..|+.+.|++.|.+.+.. .+-....||.-.+++.-.|+.++|++-+++++++.. ..-+.-...|..-...|-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag----~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAG----DQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHHH
Confidence 456677777777777777663 122566777777777777777777777777764321 111111122334444566
Q ss_pred hcCChhhHHHHHHHHHHcC
Q 044770 393 EKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 393 ~~g~~~~A~~~~~~m~~~~ 411 (464)
..|+-+.|..=|+...+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 6778888877777776655
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.97 E-value=3.7 Score=39.61 Aligned_cols=187 Identities=6% Similarity=-0.120 Sum_probs=94.3
Q ss_pred CccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHH------HHHHHHHhhcChHHHHHHhhhcCCCCCch
Q 044770 22 FPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYS------YLLEFTIKNHGISQGEKLFCCIPKDYQNE 95 (464)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 95 (464)
-.|++..+.-+.......-.++.|...|-....-.|++.-...-. .-...-+--|++++|.+++-++..+ |
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr--D- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR--D- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh--h-
Confidence 457888888888887787888888888877655334321111000 0111222347888888888877653 2
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHc-CCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHh----------------
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVL-GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA---------------- 158 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------- 158 (464)
..|..+.+.|++-...++++.--.. .-..-...|+.+...++....|++|.+.|..-..
T Consensus 765 ----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~ 840 (1189)
T KOG2041|consen 765 ----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGE 840 (1189)
T ss_pred ----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhh
Confidence 2344555566666555554321100 0000123455555555554455555544443211
Q ss_pred -----CCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHH
Q 044770 159 -----DKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224 (464)
Q Consensus 159 -----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 224 (464)
..++.+....-.+.+++...|--++|.+.|-+-. .|- ..+..|...++|.+|.++-+
T Consensus 841 LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 841 LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHHHHHHHH
Confidence 1234444444555555555555555555443322 111 22344555555555555444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.51 Score=39.75 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=69.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--ccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc-HH
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCK--PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LE 382 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~ 382 (464)
.|+.-+. +.+.|++..|...|...++.... -....+-.|..++...|++++|..+|..+.+ ..+-.|. ..
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k------~~P~s~KApd 216 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK------DYPKSPKAPD 216 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH------hCCCCCCChH
Confidence 4665554 44567788899888888875321 1223456788888899999999999988863 2333332 34
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 383 TTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
.+--|.....+.|+.++|..+|++..+.
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5557888888899999999999988875
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.85 E-value=1.3 Score=33.82 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=23.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhc
Q 044770 170 ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213 (464)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 213 (464)
.++..+...+.+.....+++.+...+. .+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 455555555556666666666555542 3445555555555543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.80 E-value=1.4 Score=33.73 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=18.9
Q ss_pred HHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 044770 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN 177 (464)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (464)
++..+...+.......+++.+...+ ..+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 4444444444445555555544443 2344444455555543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.73 E-value=2.1 Score=35.69 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=39.3
Q ss_pred hHHHHHHHhcCCCCcccHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHH-H
Q 044770 132 VFNRLIILNSSPGRRKTIPNILRQMKAD-KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT-A 209 (464)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~-~ 209 (464)
.+......+...+++..+...+...... ........+......+...+++..+.+.+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3333344444444444444444444321 112333334444444444445555555555554432221 111111111 4
Q ss_pred HHhcChhhHHHHHHHHH
Q 044770 210 HAVARLYTVAETYVEAL 226 (464)
Q Consensus 210 ~~~~~~~~~a~~~~~~~ 226 (464)
+...|+++.+...+.+.
T Consensus 140 ~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 140 LYELGDYEEALELYEKA 156 (291)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 45555555555555555
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.48 Score=39.89 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=10.5
Q ss_pred HHHHHhhccCChHHHHHHHHHHHh
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
-|.....+.|+.++|..+|+++.+
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333444444444444444444443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.37 Score=35.39 Aligned_cols=90 Identities=14% Similarity=0.001 Sum_probs=57.1
Q ss_pred HHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCch---hhHHHHHHHhcCCCCc
Q 044770 71 FTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISY---LVFNRLIILNSSPGRR 146 (464)
Q Consensus 71 ~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~~~~ 146 (464)
+++..|+++.|++.|.+.... +.+...||.-..++.-.|+.++|++-+++..+..-..+. ..|..-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456677777777777776555 335677777777777777777777777777663211121 2233333446666777
Q ss_pred ccHHHHHHHHHhCC
Q 044770 147 KTIPNILRQMKADK 160 (464)
Q Consensus 147 ~~a~~~~~~~~~~~ 160 (464)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77777777666555
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.32 Score=43.23 Aligned_cols=94 Identities=9% Similarity=-0.057 Sum_probs=48.5
Q ss_pred hHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHH-HHHHHHH
Q 044770 132 VFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY-CILATAH 210 (464)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~ 210 (464)
++..+.-++.+.+++..|+..-+..+..+ ++|+-..---..++...|+++.|...|+++.+. .|+...- +.++.+-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 34445555555566666666555555544 445444444555666666666666666666654 4443333 3333333
Q ss_pred HhcChh-hHHHHHHHHHHh
Q 044770 211 AVARLY-TVAETYVEALEK 228 (464)
Q Consensus 211 ~~~~~~-~~a~~~~~~~~~ 228 (464)
.+.... +...++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 333333 233556666644
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.31 E-value=1.1 Score=38.82 Aligned_cols=151 Identities=7% Similarity=-0.144 Sum_probs=98.1
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhh----HHHHHHHHHccCChh
Q 044770 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVST----FHILMKIEANDHNIE 182 (464)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~ 182 (464)
..|++.+|-..++++++. .+.|...+...=++|.-.|+.+.-...++.+...- .+|... -..+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 457777777888888875 56777788877788888888888888888876531 344433 334445566788899
Q ss_pred HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhc---cCCCChhhHHHHHHHHHhhcChhhHHHHHH
Q 044770 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS---MTGNNWSTLDVLIILYGYLAKGKDLERIWA 259 (464)
Q Consensus 183 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (464)
+|++.-++..+-+ +.|...-.+....+-..++..++.++..+-... +.-.-..-|-...-.+...+.++.|+.+|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9988888877654 335666666777777788888888776653221 100011112222233445577888887776
Q ss_pred H
Q 044770 260 T 260 (464)
Q Consensus 260 ~ 260 (464)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.30 E-value=2.8 Score=35.19 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=23.6
Q ss_pred hhcChHHHHHHhhhcCCCCC----chhHHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 044770 74 KNHGISQGEKLFCCIPKDYQ----NELLYNNLVIACLDKGVIKLSLEYMKKMRV 123 (464)
Q Consensus 74 ~~g~~~~a~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 123 (464)
..|++++|.+.|+.+....| ...+--.++.++-+.++++.|+..+++..+
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 44555555555555544422 122333344444555555555555555554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.8 Score=33.48 Aligned_cols=72 Identities=13% Similarity=0.050 Sum_probs=36.1
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHH
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIAC 105 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 105 (464)
++..-.+.++.+++..+++-+..-.+-.|...++.. ..+...|++.+|..+|+.+....|....-..|+..|
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333444556666777776666553222222222222 234566667777777776655544333333444333
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.6 Score=32.30 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=26.1
Q ss_pred HHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 044770 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335 (464)
Q Consensus 275 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 335 (464)
.++.+...|+-+.-.+++..+.+ +-.+++...-.+..+|.+.|+..++-+++.+.-+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34444455555555555555443 2234444445555555555555555555555555443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.20 E-value=2.1 Score=37.34 Aligned_cols=115 Identities=10% Similarity=-0.055 Sum_probs=50.7
Q ss_pred cChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccC--CCCchhhHH--HHHHHhhccCChHHH
Q 044770 213 ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--PNVRSKSYV--LAIEAFGRIAQVSRA 288 (464)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~--~l~~~~~~~g~~~~a 288 (464)
.|+..+|-..++++++. .+.|...+...-.+|...|+.+.....++.+... +.....+|. .+.-++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 34455555555555544 4445455555555555555555555555544432 111111121 122223345555555
Q ss_pred HHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 044770 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329 (464)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 329 (464)
++.-++..+.+ +.|...-.+....+-..|+..++.++..+
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 55555444422 12333333344444444555555554443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.47 Score=37.95 Aligned_cols=97 Identities=14% Similarity=0.047 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH--HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcH--
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA--ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL-- 381 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~-- 381 (464)
.+..+..-|++.|+.+.|++.|.++.+....|.. ..+-.+|+.....+++..+.....++..... .+..++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~----~~~d~~~~n 113 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE----KGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh----ccchHHHHH
Confidence 5666777777777777888777777776544443 3455667777777788777777777743321 1222222
Q ss_pred --HHHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 382 --ETTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 382 --~~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
..|..|. +...|++.+|-+.|-+..
T Consensus 114 rlk~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 114 RLKVYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHH--HHHhchHHHHHHHHHccC
Confidence 2222222 234677888777765544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.99 Score=40.31 Aligned_cols=69 Identities=10% Similarity=0.013 Sum_probs=35.1
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 343 (464)
+..+..+|.+.+++..|++.-...... .++|+...-.=..+|...|+++.|+..|+.+++ +.|+.....
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~-~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~ 328 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLEL-DPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAAR 328 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHH
Confidence 444455555555555555555555542 223444444445555555555555555555555 444444333
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.17 E-value=3.6 Score=35.92 Aligned_cols=164 Identities=15% Similarity=0.069 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHhcChhh---HHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHH
Q 044770 201 VSYCILATAHAVARLYT---VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277 (464)
Q Consensus 201 ~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 277 (464)
.++..++.+|...+..+ +|..+++.+... .+-.+.++..-+..+.+.++.+.+.+.+..|..........+..++.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 34555666666665543 455555555433 22234445455666666777777777777777765544444555555
Q ss_pred Hhhc--cCChHHHHHHHHHHHhccccCChhhH-HH-HHHH---HHhcCC------hhHHHHHHHHHHh-CCCCccHHHHH
Q 044770 278 AFGR--IAQVSRAEELWLEMQSVKQLKATEQY-NS-VISV---YCKNGF------IDKASGLLKEMSM-NGCKPNAITYR 343 (464)
Q Consensus 278 ~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~-~~-li~~---~~~~~~------~~~a~~~~~~m~~-~g~~p~~~~~~ 343 (464)
.+.. ......|...+..+......|....| .. ++.. ..+.++ .+...+++....+ .+.+.+..+-.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4422 22334555666555544444444311 11 1111 111111 3344444543332 22233333322
Q ss_pred ---HH----HHHHHhcCChHHHHHHHHHh
Q 044770 344 ---HL----ALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 344 ---~l----l~~~~~~~~~~~a~~~~~~~ 365 (464)
++ ...+.+.+++++|.+.|+..
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 22 23466789999999999876
|
It is also involved in sporulation []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.06 E-value=3.7 Score=38.00 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 383 TTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
+...|+.++...+.+.++..++.+..
T Consensus 297 IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 297 IRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 33445555555555555555554443
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=4.4 Score=37.34 Aligned_cols=145 Identities=14% Similarity=0.054 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHh-ccccCC-hhhHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 044770 285 VSRAEELWLEMQS-VKQLKA-TEQYNSVISVYCK---------NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353 (464)
Q Consensus 285 ~~~a~~~~~~~~~-~~~~~~-~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 353 (464)
.+.|..+|.+... ....|+ ...|..+..++.. .....+|.++-+...+.+. -|+.....+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhc
Confidence 4566777777661 112232 3334444333322 1234456667777776542 26666666666667777
Q ss_pred ChHHHHHHHHHhHHHHhhhhhcCCCCcH-HHHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHcC-
Q 044770 354 LVEEGFKALELGMKLITTKKVRSSTPWL-ETTLSIIEIFAEKGDVGNAENLFEELKKAN-YTKYTFVYNTLIKAYVKAK- 430 (464)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g- 430 (464)
+++.|...|+++ ..+.||. .+|......+.-.|+.++|.+.+++..+.. .+.-....-..+..|+.++
T Consensus 353 ~~~~a~~~f~rA---------~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~ 423 (458)
T PRK11906 353 QAKVSHILFEQA---------KIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPL 423 (458)
T ss_pred chhhHHHHHHHH---------hhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCch
Confidence 788888888887 4556643 334444444556788888888888865532 1112224444555777776
Q ss_pred CChhHHHHH
Q 044770 431 INDPNLLRR 439 (464)
Q Consensus 431 ~~a~~~~~~ 439 (464)
+.|+.++-+
T Consensus 424 ~~~~~~~~~ 432 (458)
T PRK11906 424 KNNIKLYYK 432 (458)
T ss_pred hhhHHHHhh
Confidence 346665543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.93 E-value=5.3 Score=37.06 Aligned_cols=58 Identities=19% Similarity=0.075 Sum_probs=31.7
Q ss_pred HHHHHHhcChhhHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhhcChhhHHHHHHHhcc
Q 044770 206 LATAHAVARLYTVAETYVEALEKSMTGN-NWSTLDVLIILYGYLAKGKDLERIWATVQE 263 (464)
Q Consensus 206 li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (464)
+..++-+.|+.++|++.++++.+..... .......|+.++...+.+.++..++....+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 4444455666666666666665432221 223445566666666666666666666544
|
The molecular function of this protein is uncertain. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.92 E-value=2.5 Score=33.19 Aligned_cols=31 Identities=6% Similarity=0.118 Sum_probs=15.7
Q ss_pred HHHHHHhCCCCCcHhHHHHHHHHHHhcChhh
Q 044770 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYT 217 (464)
Q Consensus 187 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 217 (464)
+++.+.+.+++|+...+..++..+.+.|++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3344444455555555555555555555443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.92 E-value=3.2 Score=34.56 Aligned_cols=200 Identities=18% Similarity=0.071 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHhc-cCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHH-Hh
Q 044770 202 SYCILATAHAVARLYTVAETYVEALEKS-MTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE-AF 279 (464)
Q Consensus 202 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~-~~ 279 (464)
.+......+...+....+...+...... ........+......+...+....+...+.........+......... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3344444444444444444444444331 122223333333444444444444444444444322222111222222 56
Q ss_pred hccCChHHHHHHHHHHHhccc--cCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHH
Q 044770 280 GRIAQVSRAEELWLEMQSVKQ--LKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357 (464)
Q Consensus 280 ~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 357 (464)
...|+++.|...+........ ......+......+...++.+.+...+..............+..+...+...++++.
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence 666666777766666644111 012222333333355566777777777776663211124555566666666667777
Q ss_pred HHHHHHHhHHHHhhhhhcCCCCc-HHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 358 GFKALELGMKLITTKKVRSSTPW-LETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
+...+.... ...|+ ...+..+...+...|..+++...+......
T Consensus 221 a~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 221 ALEYYEKAL---------ELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHH---------hhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777663 22222 233333444444555677777776666654
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.79 E-value=3.6 Score=34.67 Aligned_cols=146 Identities=13% Similarity=0.169 Sum_probs=69.0
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhcccc-----------CChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCccHHH
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQL-----------KATEQYNSVISVYCKNGFIDKASGLLKEMSMN-GCKPNAIT 341 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~ 341 (464)
-|...|...|.+.+..+++.++...... .-...|..-|..|....+-.....+|++...- .-.|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 4444555555555555555555432111 11235666667777766666666667665542 23344443
Q ss_pred HHHHHHHH-----HhcCChHHHHHHHHHhHHHHhhhhhcCCCCc---HHHHHHHHHHHHhcCChhhHHHHHHHHHHcC--
Q 044770 342 YRHLALGC-----FKSNLVEEGFKALELGMKLITTKKVRSSTPW---LETTLSIIEIFAEKGDVGNAENLFEELKKAN-- 411 (464)
Q Consensus 342 ~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-- 411 (464)
.. +|+-| .+.|++++|-.-|-++.+-.+ ..-.|- ..-|-.|.+++.+.|-- -|+.-....
T Consensus 230 mG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYD----EsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyK 299 (440)
T KOG1464|consen 230 MG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYD----ESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYK 299 (440)
T ss_pred Hh-HHHHcCCccccccchHHHHHhHHHHHHhccc----ccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCC
Confidence 33 33333 345677776544444432211 112222 22255666666665521 111111111
Q ss_pred CCCcHHHHHHHHHHHHHc
Q 044770 412 YTKYTFVYNTLIKAYVKA 429 (464)
Q Consensus 412 ~~p~~~~~~~li~~~~~~ 429 (464)
-.|.+...+.|+.+|-..
T Consensus 300 NdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 300 NDPEILAMTNLVAAYQNN 317 (440)
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 134455666777777654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.70 E-value=2.7 Score=32.87 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=66.5
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCcH-hHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChh-hHHHH--HHHHHhhcC
Q 044770 175 EANDHNIEGLMKVYSDMKRSEVEPNE-VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS-TLDVL--IILYGYLAK 250 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~ 250 (464)
+++.+..++|+.-|.++.+.|..-=+ -.--.+.....+.|+...|...|+++-.....|-.. -...+ .-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 35566777777777777766533111 111112223456777777777777776544444322 11111 122345566
Q ss_pred hhhHHHHHHHhcc-CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 251 GKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 251 ~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
++++....+.+.. ..+.....-.+|.-+-.+.|++..|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6666655555544 2222333344566666677777777777777665
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.66 E-value=2.3 Score=41.76 Aligned_cols=180 Identities=14% Similarity=0.028 Sum_probs=101.3
Q ss_pred hHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcC
Q 044770 64 DYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142 (464)
Q Consensus 64 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 142 (464)
....-+..+.+..-++-|..+-+.-..... -........+-+-+.|++++|...|-+-+.. +.|.. ++.-|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHhcC
Confidence 345666666777777777776665443100 1122333344455678888887777655542 23322 4455556
Q ss_pred CCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHH
Q 044770 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222 (464)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 222 (464)
......-..+++.+.+.|+ .+...-+.|+.+|.+.++.+.-.++.+.-. .|.. ..-....+..|-+.+-.++|..+
T Consensus 410 aq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 6666666677777777773 455556677888888888777666655443 2211 11234455566666666666555
Q ss_pred HHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHh
Q 044770 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261 (464)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (464)
-..... +..... -.+-..+++++|.+.++.+
T Consensus 486 A~k~~~-----he~vl~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK-----HEWVLD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc-----CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence 444322 222222 2334566777777776655
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.42 E-value=8.5 Score=38.00 Aligned_cols=87 Identities=10% Similarity=0.136 Sum_probs=39.5
Q ss_pred HHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHH-HHHHHhccCCCCchhhHHHHHHHhhc---cC
Q 044770 208 TAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE-RIWATVQELPNVRSKSYVLAIEAFGR---IA 283 (464)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~l~~~~~~---~g 283 (464)
..+.-.|+++.|++++-. ..+...+...+...+..|+-.+-.+... .++..-...+++ .-+..||..|.+ ..
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~--ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP--LNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT--------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC--cCHHHHHHHHHHHHhcc
Confidence 344557888888888776 2223445555555555444333322222 111111111111 447788888875 56
Q ss_pred ChHHHHHHHHHHHhc
Q 044770 284 QVSRAEELWLEMQSV 298 (464)
Q Consensus 284 ~~~~a~~~~~~~~~~ 298 (464)
+...|.+.|--+...
T Consensus 342 d~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 342 DPREALQYLYLICLF 356 (613)
T ss_dssp -HHHHHHHHHGGGGS
T ss_pred CHHHHHHHHHHHHHc
Confidence 778888888776653
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.7 Score=39.59 Aligned_cols=77 Identities=12% Similarity=-0.003 Sum_probs=51.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHh-----ccCCCChhhHHHH
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK-----SMTGNNWSTLDVL 241 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 241 (464)
++..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566677777777777777777776654 33666777777777777777777777766643 4666666665555
Q ss_pred HHH
Q 044770 242 IIL 244 (464)
Q Consensus 242 ~~~ 244 (464)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.38 E-value=4 Score=33.94 Aligned_cols=136 Identities=12% Similarity=0.050 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC
Q 044770 65 YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144 (464)
Q Consensus 65 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 144 (464)
|..-..+|....++++|...+.+..+..-+...+ +-....++.|.-+..+|... +--+..|+.....|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhC
Confidence 4444456667777888877776655321111111 11122345555555555542 223445666667777888
Q ss_pred CcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh---CC--CCCcHhHHHHHHHHHHhcChhhHH
Q 044770 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR---SE--VEPNEVSYCILATAHAVARLYTVA 219 (464)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~--~~p~~~~~~~li~~~~~~~~~~~a 219 (464)
.++.|-..++..-+ ..+.-+++.|+++|++-.. .+ .+.-...+...-..+.+.+.+++|
T Consensus 106 spdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 106 SPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 77777777666543 1233445555555554321 11 011122233444556666666666
Q ss_pred HHHHH
Q 044770 220 ETYVE 224 (464)
Q Consensus 220 ~~~~~ 224 (464)
-..+.
T Consensus 170 a~a~l 174 (308)
T KOG1585|consen 170 ATAFL 174 (308)
T ss_pred HHHHH
Confidence 55443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.36 E-value=5.2 Score=35.13 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhccccCC-hhhHHHHHHHHHhc-CC--hhHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 044770 286 SRAEELWLEMQSVKQLKA-TEQYNSVISVYCKN-GF--IDKASGLLKEMSMNGCKPNAITYRHLALG 348 (464)
Q Consensus 286 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~-~~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 348 (464)
+.++.+|+.+.+.|...+ ...+.+-+-++... .. ...+.++++.+.+.|+++....|..+.-.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 456666777776565543 21222222223221 11 45778888999999988877776655433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.35 Score=28.06 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 044770 97 LYNNLVIACLDKGVIKLSLEYMKKMRVL 124 (464)
Q Consensus 97 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 124 (464)
+|..+...|...|++++|.++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666664
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.66 Score=39.74 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHh-----CCCCCChhhHHH
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA-----DKVAPHVSTFHI 170 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 170 (464)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 455666667777777777777777777653 44666777777777777777777777776654 467777766666
Q ss_pred HHHH
Q 044770 171 LMKI 174 (464)
Q Consensus 171 l~~~ 174 (464)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6555
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.25 E-value=3.3 Score=32.52 Aligned_cols=51 Identities=8% Similarity=0.256 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHH
Q 044770 151 NILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI 205 (464)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 205 (464)
+++..+.+.+++|+...+..+++.+.+.|++.. +.++.+.++-+|......
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~ 65 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLAC 65 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHH
Confidence 344444555666666666666666666666443 334444454555444433
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.35 Score=41.34 Aligned_cols=98 Identities=10% Similarity=0.052 Sum_probs=53.8
Q ss_pred CCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-----CC--chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCch
Q 044770 58 YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-----YQ--NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISY 130 (464)
Q Consensus 58 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 130 (464)
.+.+..+-..++..-....+++.+...+=++... .+ +..+|-.++. .-++++++.++..=++.|+-||.
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccch
Confidence 3344444455555545556666666666555443 11 1222222222 22455666666666666666666
Q ss_pred hhHHHHHHHhcCCCCcccHHHHHHHHHhC
Q 044770 131 LVFNRLIILNSSPGRRKTIPNILRQMKAD 159 (464)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (464)
.+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 66666666666666666666666655543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.97 E-value=4.9 Score=33.78 Aligned_cols=58 Identities=16% Similarity=0.047 Sum_probs=31.0
Q ss_pred HHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 346 ALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 346 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
.+-|.+.|.+..|..-++.+++. ..-.+ ....+-.+..+|...|-.++|.+.-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~------y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN------YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 34466666666666666666421 11111 123344566666667777666666544443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.1 Score=35.91 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc--hhhHHHHHHHhcCCCCcccHHHHHHHHH
Q 044770 97 LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS--YLVFNRLIILNSSPGRRKTIPNILRQMK 157 (464)
Q Consensus 97 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (464)
.+..+...|++.|+.+.|++.|.++.+....+. ...+-.+|+...-.+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444555555555555555555555554332222 2334444555555555555555544443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.82 E-value=5.7 Score=34.15 Aligned_cols=53 Identities=11% Similarity=-0.056 Sum_probs=24.5
Q ss_pred HHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc
Q 044770 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263 (464)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (464)
....|++.+|...|+...... +-+......+..+|...|+.+.|..++..+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 344555555555555554432 11233333444444445555555444444433
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=92.73 E-value=5.9 Score=34.06 Aligned_cols=178 Identities=7% Similarity=0.029 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcC-------hHHHHHHhhhcCCC-CC-chhHHHHHHHHHHhhCcHH
Q 044770 42 NKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHG-------ISQGEKLFCCIPKD-YQ-NELLYNNLVIACLDKGVIK 112 (464)
Q Consensus 42 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~ 112 (464)
|..=.++|..+-. ..|.......++.-|....+ -++-...++-.... .+ ...-|..|+. ....+.
T Consensus 72 W~~R~~Fl~lLn~---~~p~~y~~~~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk---~N~~Vv 145 (292)
T PF13929_consen 72 WSLRLKFLKLLNI---ADPQNYSVRRFINDYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVK---RNKIVV 145 (292)
T ss_pred HHHHHHHHHHHhh---cCcccCCHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHHH---hhHHHH
Confidence 3334445544433 34555666666654443221 12334444442222 11 1112555543 334566
Q ss_pred HHHHHHHHHHH-cCCCCchhhHHHHHHHhcCCC--CcccHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCChhHHHHHH
Q 044770 113 LSLEYMKKMRV-LGHSISYLVFNRLIILNSSPG--RRKTIPNILRQMKAD-KVAPHVSTFHILMKIEANDHNIEGLMKVY 188 (464)
Q Consensus 113 ~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (464)
+|+.+|+.... ..+--|..+...+++...... ....-.++.+-+... |-.++..+....+..+++.++|..-.+++
T Consensus 146 ~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW 225 (292)
T PF13929_consen 146 EALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFW 225 (292)
T ss_pred HHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHH
Confidence 77887774322 234557777777777765522 233333444444432 34677777788888888888888888888
Q ss_pred HHHHhC-CCCCcHhHHHHHHHHHHhcChhhHHHHHHHH
Q 044770 189 SDMKRS-EVEPNEVSYCILATAHAVARLYTVAETYVEA 225 (464)
Q Consensus 189 ~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 225 (464)
+.-... +..-|...|..+|+...+.|+..-...+..+
T Consensus 226 ~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 226 EQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 877655 4566778888888888888888766665554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.32 Score=26.75 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHH
Q 044770 97 LYNNLVIACLDKGVIKLSLEYMKKMR 122 (464)
Q Consensus 97 ~~~~li~~~~~~~~~~~a~~~~~~m~ 122 (464)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777788888888888888887754
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.71 E-value=3.8 Score=31.77 Aligned_cols=20 Identities=0% Similarity=0.197 Sum_probs=10.8
Q ss_pred HHccCChhHHHHHHHHHHhC
Q 044770 175 EANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~ 194 (464)
+...|+|++|..+|+++.+.
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHhCCHHHHHHHHHHHhcc
Confidence 34555555555555555443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.46 E-value=7.4 Score=34.52 Aligned_cols=48 Identities=15% Similarity=0.032 Sum_probs=25.1
Q ss_pred HHhhcchHHHHHHHHHHHHcCC-CCCCchhHHHHHHHHHhhcChHHHHH
Q 044770 36 LRKLQLNKRALEVMEWVIRERP-YRPKELDYSYLLEFTIKNHGISQGEK 83 (464)
Q Consensus 36 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~ 83 (464)
+....+.+.|+..+.....+.. ......++..+..+.++.|.+++++.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 4455666777777666554211 11122345555556666666655543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.35 Score=26.57 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHH
Q 044770 383 TTLSIIEIFAEKGDVGNAENLFEELK 408 (464)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~ 408 (464)
+|+.|...|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999855
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.42 E-value=12 Score=37.08 Aligned_cols=182 Identities=12% Similarity=0.066 Sum_probs=119.2
Q ss_pred cChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCc--hhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHH
Q 044770 24 VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE--LDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNN 100 (464)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 100 (464)
..+.....-+..+.+..-++.|+.+.+.- +..++. .......+.+-+.|++++|...+-+-... .|+ .
T Consensus 332 L~ek~le~kL~iL~kK~ly~~Ai~LAk~~----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~ 402 (933)
T KOG2114|consen 332 LIEKDLETKLDILFKKNLYKVAINLAKSQ----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----E 402 (933)
T ss_pred eeeccHHHHHHHHHHhhhHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----H
Confidence 34455667778888888888888876543 222221 22334445566889999999888765543 332 3
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 044770 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (464)
+|.-|....+..+-...++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sny 478 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNY 478 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhCh
Confidence 566677888888888899999999865 55666789999999999888777766543 2211 1113456667777777
Q ss_pred hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHH
Q 044770 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 181 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
.++|.-+-..... .......++. ..+++++|+++++.+
T Consensus 479 l~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 479 LDEAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 7777665554432 3344444443 467888888887764
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=92.39 E-value=5.5 Score=34.21 Aligned_cols=136 Identities=13% Similarity=0.135 Sum_probs=88.4
Q ss_pred hcChHHHHHHhhhcCC--C-CCchhHHHHHHHHHHh-hC-cHHHHHHHHHHHHH-cCCCCchhhHHHHHHHhcCCCCccc
Q 044770 75 NHGISQGEKLFCCIPK--D-YQNELLYNNLVIACLD-KG-VIKLSLEYMKKMRV-LGHSISYLVFNRLIILNSSPGRRKT 148 (464)
Q Consensus 75 ~g~~~~a~~~~~~~~~--~-~~~~~~~~~li~~~~~-~~-~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (464)
..-+-+|+.+|+.... . ..|..+-..+++.... .+ ....-.++.+-+.. .|-.++..+...++..++..++|..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3446677777773322 1 3355666666666555 22 22223333444433 3356788888889999999999999
Q ss_pred HHHHHHHHHhC-CCCCChhhHHHHHHHHHccCChhHHHHHHHH-----HHhCCCCCcHhHHHHHHHHH
Q 044770 149 IPNILRQMKAD-KVAPHVSTFHILMKIEANDHNIEGLMKVYSD-----MKRSEVEPNEVSYCILATAH 210 (464)
Q Consensus 149 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----m~~~~~~p~~~~~~~li~~~ 210 (464)
..++++..... +...|...|..+|+...+.|+..-..++.++ +++.++..+...-..+-..+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 99998887765 5567888899999999999998877777664 24455665655555444443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.44 Score=27.65 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=12.1
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
+..+...|...|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.67 E-value=6.4 Score=32.16 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=15.9
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
+|--+..-+...|+.++|..+|+-...
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 455555556666666666666665554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.59 E-value=9 Score=33.67 Aligned_cols=131 Identities=14% Similarity=0.173 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHhcC--CC----CcccHHHHHHHHHhCCC---CCChhhHHHHHHHHHccCC-
Q 044770 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSS--PG----RRKTIPNILRQMKADKV---APHVSTFHILMKIEANDHN- 180 (464)
Q Consensus 111 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 180 (464)
+++.+.+++.|.+.|+.-+..+|-+..-.... .. ....|..+|+.|++.-. .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788899999998888777664443333 22 24578889999987521 3445556656543 3333
Q ss_pred ---hhHHHHHHHHHHhCCCCCcH--hHHHHHHHHHHhcCh--hhHHHHHHHHHHhccCCCChhhHHHHHH
Q 044770 181 ---IEGLMKVYSDMKRSEVEPNE--VSYCILATAHAVARL--YTVAETYVEALEKSMTGNNWSTLDVLII 243 (464)
Q Consensus 181 ---~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (464)
.+.+..+|+.+.+.|+..+. ...+.++..+..... ...+..+++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 35677888888887866543 233444433322222 3477888888999888887777665543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.54 E-value=16 Score=36.33 Aligned_cols=140 Identities=9% Similarity=-0.023 Sum_probs=77.4
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHH
Q 044770 35 RLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLS 114 (464)
Q Consensus 35 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 114 (464)
...+.|++..+.++...+.. .+. .....|..+...+ .....++....+++-+..+.....-...+..+.+.+++...
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d-~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~ 118 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKD-YPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGL 118 (644)
T ss_pred HHHHCCCHHHHHHHHHhccC-CCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHH
Confidence 34456677777666665532 221 1112222222211 12356677777777766433334444455556677788777
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH
Q 044770 115 LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183 (464)
Q Consensus 115 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 183 (464)
+..+. . .+.+...-.....+....|+.++|......+=..| ......++.+++.+.+.|.+..
T Consensus 119 ~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 119 LAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCH
Confidence 76331 1 24455556667777778888777766666654444 3445566677777766555443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.49 E-value=5 Score=30.58 Aligned_cols=57 Identities=7% Similarity=-0.066 Sum_probs=36.0
Q ss_pred HHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCC
Q 044770 34 NRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY 92 (464)
Q Consensus 34 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 92 (464)
..-...++++++..+++-+.--.+-.+...++.. ..+...|++++|.++|+++....
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence 3334577788888888877663333333333333 34567788888888888887753
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=91.48 E-value=1.4 Score=30.49 Aligned_cols=46 Identities=13% Similarity=-0.031 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 320 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
.-++.+-++.+....+.|++......+++|-+.+++..|+++++..
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3356666777777778899999999999999999999999999877
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.38 E-value=20 Score=37.30 Aligned_cols=109 Identities=14% Similarity=0.099 Sum_probs=63.2
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH--HHHHHHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA--ITYRHLALGC 349 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~ 349 (464)
|.+..+.+...+.+++|.-.|+..-+ ...-+.+|..+|+|.+|+.+..++... -|. .+-..|..-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 44444555556666666666655443 233556677777777777777765431 122 1224566667
Q ss_pred HhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 044770 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEEL 407 (464)
Q Consensus 350 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (464)
...+++-+|-++..+.. ..|. -.+..|++...+++|.++....
T Consensus 1010 ~e~~kh~eAa~il~e~~----------sd~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYL----------SDPE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHcccchhHHHHHHHHh----------cCHH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 77777777777776652 2222 3455566667777777665433
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.05 E-value=17 Score=35.87 Aligned_cols=103 Identities=11% Similarity=0.046 Sum_probs=57.6
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCC---CchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhh
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRERPYRP---KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDK 108 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~ 108 (464)
=++.+.+.+.+++|+.+.+.... ..| -...+...+..+...|++++|-...-.|.. .+...|..-+..+...
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~---~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g--n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG---NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG--NNAAEWELWVFKFAEL 436 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC---CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc--chHHHHHHHHHHhccc
Confidence 35566677777888777765533 333 234566677777777777777777666665 3555555555555555
Q ss_pred CcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcC
Q 044770 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 142 (464)
++......++ .......+...|..++..+..
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 5443332221 111112344556655555544
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.98 E-value=1.2 Score=31.14 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=34.7
Q ss_pred hhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHH
Q 044770 12 SAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLE 70 (464)
Q Consensus 12 ~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (464)
.-+..+....+-|++..+...+++|.+.+++..|.++|+-+..+.+. ....|..++.
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lq 87 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQ 87 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHH
Confidence 33444555567778888888888888888888888888877765442 2236666554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.94 E-value=13 Score=34.36 Aligned_cols=87 Identities=11% Similarity=0.014 Sum_probs=38.7
Q ss_pred HHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHH
Q 044770 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324 (464)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 324 (464)
....|+++.+.+.+............+...+++...+.|+++.|...-+.|....+. ++.........--..|-++++.
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence 344555555555555444433333444445555555555555555555544442221 2222222222222334445555
Q ss_pred HHHHHHHh
Q 044770 325 GLLKEMSM 332 (464)
Q Consensus 325 ~~~~~m~~ 332 (464)
..|++...
T Consensus 412 ~~wk~~~~ 419 (831)
T PRK15180 412 HYWKRVLL 419 (831)
T ss_pred HHHHHHhc
Confidence 55555443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.79 E-value=17 Score=35.44 Aligned_cols=121 Identities=8% Similarity=-0.078 Sum_probs=53.1
Q ss_pred HhhcChHHHHHHhhhcCCC------CCchhHHHHHHHHHHhhC-----cHHHHHHHHHHHHHcCCCCchhhHHHHHHHhc
Q 044770 73 IKNHGISQGEKLFCCIPKD------YQNELLYNNLVIACLDKG-----VIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141 (464)
Q Consensus 73 ~~~g~~~~a~~~~~~~~~~------~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 141 (464)
+...+++.|..+|+..... .-.......+...|.+.. +.+.|+.++...-+.|. |+...+-..+....
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g 338 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETG 338 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcC
Confidence 3445666666666655330 112223444444444422 44556666665555542 33333322222222
Q ss_pred C-CCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHH--ccCChhHHHHHHHHHHhCC
Q 044770 142 S-PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA--NDHNIEGLMKVYSDMKRSE 195 (464)
Q Consensus 142 ~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~~ 195 (464)
. ..+...|.++|....+.|. +....+-.++.... -..+...|..++.+..+.|
T Consensus 339 ~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 339 TKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 2 2344556666666655552 22222222211111 2334555555555555554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.64 E-value=1.5 Score=30.31 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHH
Q 044770 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227 (464)
Q Consensus 184 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 227 (464)
+.+-++.+....+.|++....+.+++|-+.+++..|.++|+-++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444444445555555555555555555544443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.60 E-value=3.8 Score=28.80 Aligned_cols=41 Identities=7% Similarity=-0.077 Sum_probs=17.6
Q ss_pred HHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc
Q 044770 223 VEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263 (464)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (464)
+..+......|++.+..+.+++|.+.+++..|.++++.++.
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33334444445555555555555555555555555444444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.21 E-value=3.8 Score=33.10 Aligned_cols=75 Identities=12% Similarity=-0.008 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhH
Q 044770 321 DKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNA 400 (464)
Q Consensus 321 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 400 (464)
+.|.+.|-.+...+.--++..... +..|....+.+++++++..++.+. ..+-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~----~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELS----NPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 567777777776654434443333 334444667777888777776652 233366666777888888887777766
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.69 Score=24.80 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
|..+..+|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444444555555555555544444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.08 E-value=6.9 Score=29.73 Aligned_cols=25 Identities=8% Similarity=-0.040 Sum_probs=12.6
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhc
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSV 298 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~ 298 (464)
.++.+|.+.+++++|...+++..+.
T Consensus 52 ~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 52 DLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4444555555555555555555443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.85 E-value=22 Score=35.21 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=33.1
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhh
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKN 75 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 75 (464)
+......++--|.+.|++++|.++.....+ .+......+...+..+...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhC
Confidence 555677788888888999988888855543 2345556677777777654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.55 E-value=9.6 Score=30.64 Aligned_cols=126 Identities=10% Similarity=0.088 Sum_probs=73.9
Q ss_pred hchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhH-----HHHHHHHHhhcChHHHHHHhhhcCCCCCch----hH
Q 044770 27 GEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDY-----SYLLEFTIKNHGISQGEKLFCCIPKDYQNE----LL 97 (464)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~ 97 (464)
..|..++.... .+.+ +.....+.+...+| ..+| -.+...+..++++++|..-++.....+.|. .+
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~----~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~ 128 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANG----KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhcc----ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHH
Confidence 34555555543 3333 44455555554321 2222 223456777888888888887665442221 22
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCC
Q 044770 98 YNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160 (464)
Q Consensus 98 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (464)
--.|.+.....|.+++|+..++.....+.. ......-.+.+...|+-++|..-|...++.+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 334556677788888888888776654422 2223344566778888888888888887764
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.52 E-value=9.2 Score=33.22 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=55.2
Q ss_pred CCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhC---CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHh
Q 044770 125 GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD---KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEV 201 (464)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 201 (464)
|.+....+...++..-....+++.+...+-.+... ...|+...+ +.++.+ -.-++++++.++..=.+.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 44444455555555555555666666665555432 111222222 122222 2335556666666666667777777
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHhc
Q 044770 202 SYCILATAHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 202 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 229 (464)
+++.+|..+.+.+++.+|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777776666665555443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.30 E-value=1.1 Score=25.32 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 381 LETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
..+++.|...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678999999999999999999998875
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.26 E-value=8.2 Score=29.47 Aligned_cols=51 Identities=12% Similarity=-0.018 Sum_probs=24.1
Q ss_pred hcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhc
Q 044770 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298 (464)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 298 (464)
.++.+++..+++.+.--.+.....-..-...+...|++++|.++|+.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 344444444444444322222211222233345566677777777666653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=89.01 E-value=19 Score=33.40 Aligned_cols=78 Identities=14% Similarity=0.058 Sum_probs=40.4
Q ss_pred hHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCC-hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 253 DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
+|.+.-+...+..+.++.....+..++.-.++++.|...|++....+ || ..+|......+.-.|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 33444444444455555445555555555555666666666665532 32 2334444444455566666666666654
Q ss_pred h
Q 044770 332 M 332 (464)
Q Consensus 332 ~ 332 (464)
+
T Consensus 400 r 400 (458)
T PRK11906 400 Q 400 (458)
T ss_pred c
Confidence 4
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.33 E-value=51 Score=37.46 Aligned_cols=149 Identities=7% Similarity=-0.030 Sum_probs=83.8
Q ss_pred HHHHHHhhcChHHHHHHhhhcCCC----CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCC
Q 044770 68 LLEFTIKNHGISQGEKLFCCIPKD----YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP 143 (464)
Q Consensus 68 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 143 (464)
+..+-.+++.+.+|...++.-... ......|..+...|..-++++....+...-.. +...+.. |-.....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~q-il~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQQ-ILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHHH-HHHHHhh
Confidence 334555777788888888773222 11223444455578888888777766653111 2222333 3345667
Q ss_pred CCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHH-HHHHHHhcChhhHHHHH
Q 044770 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI-LATAHAVARLYTVAETY 222 (464)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~~~~~~a~~~ 222 (464)
|++..|...|+.+.+.+ ++...+++-++......|.++.+....+-...+ ..+....|+. =+.+--+.++++.....
T Consensus 1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 88888888888888765 444667777777666777777766655544332 1222222222 22233455666655554
Q ss_pred HH
Q 044770 223 VE 224 (464)
Q Consensus 223 ~~ 224 (464)
+.
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 43
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=88.31 E-value=28 Score=34.49 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=39.5
Q ss_pred HhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHH--HHhcCChhhHHHHHH--------HHHHcCCCCcHHHH
Q 044770 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEI--FAEKGDVGNAENLFE--------ELKKANYTKYTFVY 419 (464)
Q Consensus 350 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~ 419 (464)
+-.+++..|...++.+.+....... ........+...+.| +...|+.+.|...|. .....+..++..++
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPS-KLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCcc-chhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 3457888899999988543211000 011122222233333 345799999999997 45555655555544
Q ss_pred HH
Q 044770 420 NT 421 (464)
Q Consensus 420 ~~ 421 (464)
..
T Consensus 451 a~ 452 (608)
T PF10345_consen 451 AA 452 (608)
T ss_pred HH
Confidence 33
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.23 E-value=1.8 Score=23.11 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 044770 382 ETTLSIIEIFAEKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 411 (464)
.+|..+...|...|++++|...|++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 467788999999999999999999998753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.84 E-value=15 Score=30.61 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=14.8
Q ss_pred HhcCChhHHHHHHHHHHhCCC
Q 044770 315 CKNGFIDKASGLLKEMSMNGC 335 (464)
Q Consensus 315 ~~~~~~~~a~~~~~~m~~~g~ 335 (464)
+..+++.+|+.+|++.....+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456778888888887766443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.73 E-value=2 Score=37.47 Aligned_cols=112 Identities=11% Similarity=-0.048 Sum_probs=66.0
Q ss_pred HHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCh
Q 044770 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355 (464)
Q Consensus 276 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 355 (464)
..-|.+.|.+++|..+|...... .+-|++++..-..+|.+..++..|..=....+..+ ..-...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~-~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV-YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc-CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 45688999999999999887762 22388888888889999888887766655554421 00112333333333334444
Q ss_pred HHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHH
Q 044770 356 EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAE 401 (464)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 401 (464)
.+|..-++.+ ..+.|+. +-|=..+.+...+.++.
T Consensus 182 ~EAKkD~E~v---------L~LEP~~---~ELkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 182 MEAKKDCETV---------LALEPKN---IELKKSLARINSLRERK 215 (536)
T ss_pred HHHHHhHHHH---------HhhCccc---HHHHHHHHHhcchHhhh
Confidence 5554444444 3455652 24455555555544443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=87.44 E-value=32 Score=34.13 Aligned_cols=395 Identities=11% Similarity=0.043 Sum_probs=194.0
Q ss_pred hHHHHHHHH-hhcchHHHHHHHHHHHHcCCCCCCchh-----HHHHHHHHHhhcChHHHHHHhhhcCCC--C----Cchh
Q 044770 29 IFHSINRLR-KLQLNKRALEVMEWVIRERPYRPKELD-----YSYLLEFTIKNHGISQGEKLFCCIPKD--Y----QNEL 96 (464)
Q Consensus 29 ~~~~l~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~a~~~~~~~~~~--~----~~~~ 96 (464)
...+...+. .-.+++.|...+++...... +++... ...++..+.+.+... |...+++..+. . +-..
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~-~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCE-RHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 444666666 56789999999998765332 233221 234455666665555 88887775544 1 1122
Q ss_pred HHHHH-HHHHHhhCcHHHHHHHHHHHHHcC---CCCchhhHHHHHHHh--cCCCCcccHHHHHHHHHhCC---------C
Q 044770 97 LYNNL-VIACLDKGVIKLSLEYMKKMRVLG---HSISYLVFNRLIILN--SSPGRRKTIPNILRQMKADK---------V 161 (464)
Q Consensus 97 ~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~---------~ 161 (464)
.|.-+ +..+...+++..|++.++.+.... -.|-..++..++.+. .+.+..+++.+.++++.... -
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 33333 333333479999999998887632 233444555555543 35566777888777774321 1
Q ss_pred CCChhhHHHHHHHHH--ccCChhHHHHHHHHHHh-------CC----------CC-------------CcHhH-------
Q 044770 162 APHVSTFHILMKIEA--NDHNIEGLMKVYSDMKR-------SE----------VE-------------PNEVS------- 202 (464)
Q Consensus 162 ~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~-------~~----------~~-------------p~~~~------- 202 (464)
.|-..+|..+++.++ ..|+++.+...++++.+ .. ++ |....
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l 299 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEEL 299 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHH
Confidence 345667777776654 46776676666555432 10 00 11111
Q ss_pred --HHHHHHH--HHhcChhhHHHHHHHHHHhc--------cCCCCh--------hhHHHHHH---------HHHhhcChhh
Q 044770 203 --YCILATA--HAVARLYTVAETYVEALEKS--------MTGNNW--------STLDVLII---------LYGYLAKGKD 253 (464)
Q Consensus 203 --~~~li~~--~~~~~~~~~a~~~~~~~~~~--------~~~~~~--------~~~~~l~~---------~~~~~~~~~~ 253 (464)
...++.+ .+..+..++|.+++++..+. ...+.. ..+...+. ..+-.+++..
T Consensus 300 ~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~ 379 (608)
T PF10345_consen 300 YALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSK 379 (608)
T ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence 1112222 22344444565555543221 111111 11111111 2244577888
Q ss_pred HHHHHHHhccC----CC---CchhhHHHHH--HHhhccCChHHHHHHHH--------HHHhccccCChhhHHHH--HHHH
Q 044770 254 LERIWATVQEL----PN---VRSKSYVLAI--EAFGRIAQVSRAEELWL--------EMQSVKQLKATEQYNSV--ISVY 314 (464)
Q Consensus 254 a~~~~~~~~~~----~~---~~~~~~~~l~--~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l--i~~~ 314 (464)
+.+..+.+... +. .....+..++ -.+...|+.+.|...|. .....+...+...+..+ +..+
T Consensus 380 a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~ 459 (608)
T PF10345_consen 380 ATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIIL 459 (608)
T ss_pred HHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHh
Confidence 88888877762 11 1111222222 33345799999999997 34443444444443332 1122
Q ss_pred HhcC--ChhH--HHHHHHHHHhC-CCCc--cHHHHH-HHHHHHHhc--CChHHHHHHHHHhHHHHhhhhhcCCC-CcHHH
Q 044770 315 CKNG--FIDK--ASGLLKEMSMN-GCKP--NAITYR-HLALGCFKS--NLVEEGFKALELGMKLITTKKVRSST-PWLET 383 (464)
Q Consensus 315 ~~~~--~~~~--a~~~~~~m~~~-g~~p--~~~~~~-~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~-p~~~~ 383 (464)
...+ ..++ +.++++.+... .-.| +..+.. .++.++... -...++...+...++... ...+.. -...+
T Consensus 460 ~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~--~~~~n~~l~~~~ 537 (608)
T PF10345_consen 460 QYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMAN--NKLGNSQLLAIL 537 (608)
T ss_pred HhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHH--HhhccchHHHHH
Confidence 2222 2223 66666665542 1122 223333 333333322 223477777777765431 011111 11222
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCC-C--cHHHHHHHHHHHHH
Q 044770 384 TLSIIEIFAEKGDVGNAENLFEELKKANYT-K--YTFVYNTLIKAYVK 428 (464)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p--~~~~~~~li~~~~~ 428 (464)
++.+...+. .|+..+..+.........-+ | ....|..+..+...
T Consensus 538 L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~ 584 (608)
T PF10345_consen 538 LNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLA 584 (608)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 333333333 68888866665543322111 2 44578555554443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.21 E-value=0.6 Score=25.25 Aligned_cols=20 Identities=30% Similarity=0.595 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHhcCChhHH
Q 044770 304 TEQYNSVISVYCKNGFIDKA 323 (464)
Q Consensus 304 ~~~~~~li~~~~~~~~~~~a 323 (464)
...|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33344444444444444333
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.20 E-value=0.69 Score=25.03 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=9.8
Q ss_pred ChhhHHHHHHHHHccCChhHH
Q 044770 164 HVSTFHILMKIEANDHNIEGL 184 (464)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a 184 (464)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.97 E-value=8.8 Score=36.55 Aligned_cols=98 Identities=15% Similarity=0.138 Sum_probs=46.7
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHH
Q 044770 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186 (464)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (464)
+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|....+ |..|+-.+...|+-+....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4455555555443321 334455666666666666666666555443 2234444444555444444
Q ss_pred HHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHH
Q 044770 187 VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225 (464)
Q Consensus 187 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 225 (464)
+-....+.|.. | ....+|...|+++++.+++..
T Consensus 714 la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQGKN-N-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhccc-c-----hHHHHHHHcCCHHHHHHHHHh
Confidence 44444444321 1 112234445555555555443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.90 E-value=24 Score=32.00 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=33.5
Q ss_pred HHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 044770 137 IILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 193 (464)
..+..+.|+|+...+........ .++...|.++... +.++++++....+....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45667788888866555554432 2355555555433 77888888887777654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.82 E-value=1.5 Score=23.30 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=9.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 044770 309 SVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 309 ~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
.+...+...|++++|++.|++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=86.80 E-value=27 Score=32.59 Aligned_cols=13 Identities=8% Similarity=0.013 Sum_probs=5.9
Q ss_pred hhcChHHHHHHhh
Q 044770 74 KNHGISQGEKLFC 86 (464)
Q Consensus 74 ~~g~~~~a~~~~~ 86 (464)
..|+.+-+..+++
T Consensus 11 ~~g~~~iv~~Ll~ 23 (413)
T PHA02875 11 LFGELDIARRLLD 23 (413)
T ss_pred HhCCHHHHHHHHH
Confidence 3444444444444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.44 E-value=25 Score=31.83 Aligned_cols=67 Identities=10% Similarity=-0.019 Sum_probs=47.4
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC---cHhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEP---NEVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
.....+|..+.+.+.+.|.++.|...+..+...+... ++...-.-++..-..|+..+|+..++....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445678888888999999999999998887643211 233334445556677888888888887766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.41 E-value=2.6 Score=22.34 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 382 ETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
..+..+...+...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667888999999999999999998875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.83 E-value=0.54 Score=36.12 Aligned_cols=84 Identities=12% Similarity=0.094 Sum_probs=47.5
Q ss_pred HHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCh
Q 044770 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215 (464)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 215 (464)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..+...++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45556666666777777777766554455666677777777776666666665511 11222345555556666
Q ss_pred hhHHHHHHHHH
Q 044770 216 YTVAETYVEAL 226 (464)
Q Consensus 216 ~~~a~~~~~~~ 226 (464)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66655555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.69 E-value=2.3 Score=23.84 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHH
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRV 123 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 123 (464)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777888888777777654
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.68 E-value=29 Score=31.92 Aligned_cols=78 Identities=14% Similarity=0.059 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHH
Q 044770 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421 (464)
Q Consensus 342 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 421 (464)
...|+.-|...|+..+|.+...+. .-.+-.....+.+++.+.-+.|+-...+.++++.-..| .+|-|.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeL--------gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQ 579 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKEL--------GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQ 579 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHh--------CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHH
Confidence 567888899999999999988876 22333356778899999999999888888888877755 568888
Q ss_pred HHHHHHHcCC
Q 044770 422 LIKAYVKAKI 431 (464)
Q Consensus 422 li~~~~~~g~ 431 (464)
|-++|.+-.+
T Consensus 580 MtkGf~RV~d 589 (645)
T KOG0403|consen 580 MTKGFERVYD 589 (645)
T ss_pred hhhhhhhhhc
Confidence 9999988764
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.70 E-value=2.4 Score=22.24 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=20.4
Q ss_pred hHHHHHHHHhhcchHHHHHHHHHHHHcC
Q 044770 29 IFHSINRLRKLQLNKRALEVMEWVIRER 56 (464)
Q Consensus 29 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~ 56 (464)
+..+...+.+.|++++|.+.|+.+++..
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4456667777788888888888887753
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.34 E-value=6.7 Score=31.74 Aligned_cols=73 Identities=11% Similarity=-0.030 Sum_probs=51.1
Q ss_pred ccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC---CCCCcHhHHHHHHHHHHhcChhhHHH
Q 044770 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS---EVEPNEVSYCILATAHAVARLYTVAE 220 (464)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a~ 220 (464)
+.|.+.|-.+...+.--++.....|...|. ..+.+++..++....+. +-.+|+..+..|+..+.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 567777777777665555555555665555 56778888877776543 23667888888888888888887764
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.19 E-value=40 Score=32.30 Aligned_cols=382 Identities=9% Similarity=0.006 Sum_probs=215.4
Q ss_pred CCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchh-HHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 044770 60 PKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNEL-LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLII 138 (464)
Q Consensus 60 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 138 (464)
.+...|..++.---...+.+.+..+++.+....|... -|-....-=.+.|..+.+.++|++-... ++-+...|...+.
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 3455666777665555566788888888887777654 5677777777889999999999999874 7778888887776
Q ss_pred Hhc-CCCCcccHHHHHHHHHhC-CCC-CChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHH---h
Q 044770 139 LNS-SPGRRKTIPNILRQMKAD-KVA-PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA---V 212 (464)
Q Consensus 139 ~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~---~ 212 (464)
.+. ..|+.+...+.|+..... |.. .....|...|..-..++++.....+|+...+. ....|+....-|. +
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHh
Confidence 654 567777888888888763 322 34567888888888999999999999998863 1222222222221 1
Q ss_pred c------ChhhHHHHHHHHHH--------------------hccCCCChh--hHHHHHHHH-------HhhcChhhHHHH
Q 044770 213 A------RLYTVAETYVEALE--------------------KSMTGNNWS--TLDVLIILY-------GYLAKGKDLERI 257 (464)
Q Consensus 213 ~------~~~~~a~~~~~~~~--------------------~~~~~~~~~--~~~~l~~~~-------~~~~~~~~a~~~ 257 (464)
. ...+++.++-.... ..+.+.+.. ..+.+-..+ ...-........
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 1 11222222211111 111111100 111111111 111112222222
Q ss_pred HHHhccCC--------CCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 044770 258 WATVQELP--------NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKE 329 (464)
Q Consensus 258 ~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 329 (464)
++...+.+ .....+|...++--...|+.+.+.-+|++..-. +..=...|-..+.-....|+.+-|..++..
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~ 356 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLAR 356 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHh
Confidence 33322211 122346777788888899999999999887651 111122344444444445888888887777
Q ss_pred HHhCCCCccHHHHHHHHHH-HHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHH-HHHHHHHHHHhcCChhhHH---HHH
Q 044770 330 MSMNGCKPNAITYRHLALG-CFKSNLVEEGFKALELGMKLITTKKVRSSTPWLE-TTLSIIEIFAEKGDVGNAE---NLF 404 (464)
Q Consensus 330 m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~---~~~ 404 (464)
..+--+ |+......+-.. +-..|++..|..+++... ... |+.. .-..-+....+.|..+.+. .++
T Consensus 357 ~~~i~~-k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~--------~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~ 426 (577)
T KOG1258|consen 357 ACKIHV-KKTPIIHLLEARFEESNGNFDDAKVILQRIE--------SEY-PGLVEVVLRKINWERRKGNLEDANYKNELY 426 (577)
T ss_pred hhhhcC-CCCcHHHHHHHHHHHhhccHHHHHHHHHHHH--------hhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHH
Confidence 665432 232222222222 344689999999999983 223 5432 2223445566788888887 333
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHHc-------CCChhHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044770 405 EELKKANYTKYTFVYNTLIKAYVKA-------KINDPNLLRRMILGGARPDAETYSLLKLAEQ 460 (464)
Q Consensus 405 ~~m~~~~~~p~~~~~~~li~~~~~~-------g~~a~~~~~~m~~~~~~p~~~t~~~L~~~~~ 460 (464)
....... -+..+.+.+.--+.+- ++.|..++.+|.+. ++++..-|..++..+.
T Consensus 427 s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 427 SSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred HHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 3333221 2223333333333332 22377777777763 3344444455555443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.88 E-value=0.6 Score=35.84 Aligned_cols=85 Identities=19% Similarity=0.115 Sum_probs=58.1
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 353 (464)
.++..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 356667777888888888888886555566778888888888887777777777721 1122345667777777
Q ss_pred ChHHHHHHHHHh
Q 044770 354 LVEEGFKALELG 365 (464)
Q Consensus 354 ~~~~a~~~~~~~ 365 (464)
.++++.-++..+
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 777777777665
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.41 E-value=2.2 Score=21.28 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH
Q 044770 384 TLSIIEIFAEKGDVGNAENLFEE 406 (464)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~ 406 (464)
...+...+...|++++|..++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhC
Confidence 34678889999999999998863
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.41 E-value=30 Score=30.22 Aligned_cols=57 Identities=11% Similarity=-0.104 Sum_probs=27.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 302 KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 302 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
++...-...+.++.+.|. ..++..+-+..+.+ + .....+.++...|+. +|...+..+
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 344455555566666555 34444444444332 1 123445555555553 455555554
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=83.21 E-value=40 Score=31.47 Aligned_cols=72 Identities=11% Similarity=0.040 Sum_probs=35.7
Q ss_pred hhhHHHHhhcCccChhc--hHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCch--hHHHHHHHHHhhcChHHHHHHhhh
Q 044770 12 SAFQSWMREGFPVHRGE--IFHSINRLRKLQLNKRALEVMEWVIRERPYRPKEL--DYSYLLEFTIKNHGISQGEKLFCC 87 (464)
Q Consensus 12 ~~l~~~~~~g~~~~~~~--~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~ 87 (464)
++++.+.+.|..++... -...+...+..|+.+-+ +.+.+ .|..|+.. ....-+...+..|+.+.+..+++.
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~-~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMK-HGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHh-CCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc
Confidence 45566666666655433 23344455555665433 33333 23333221 122345555667777776666654
Q ss_pred c
Q 044770 88 I 88 (464)
Q Consensus 88 ~ 88 (464)
-
T Consensus 91 ~ 91 (413)
T PHA02875 91 G 91 (413)
T ss_pred C
Confidence 3
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=83.01 E-value=19 Score=27.57 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=65.6
Q ss_pred hhcCCCCcHHH--HHHHHHHHHhcCChhhHHHHHHHHHHcC---C--CCcHHHHHHHHHHHHHcCC---ChhHHHHHHHh
Q 044770 373 KVRSSTPWLET--TLSIIEIFAEKGDVGNAENLFEELKKAN---Y--TKYTFVYNTLIKAYVKAKI---NDPNLLRRMIL 442 (464)
Q Consensus 373 ~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~---~--~p~~~~~~~li~~~~~~g~---~a~~~~~~m~~ 442 (464)
.+.+..++..+ .|+++.-....+++.-...+++.+.... + ..+..+|++++.+.++..- .+..+|+-|++
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 33455555533 6788888888888888888888775321 1 1345589999999976653 27899999999
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 044770 443 GGARPDAETYSLLKLAEQ 460 (464)
Q Consensus 443 ~~~~p~~~t~~~L~~~~~ 460 (464)
.+.+++..-|..|+.++.
T Consensus 109 ~~~~~t~~dy~~li~~~l 126 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAAL 126 (145)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999988875
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.97 E-value=42 Score=31.62 Aligned_cols=200 Identities=10% Similarity=0.023 Sum_probs=0.0
Q ss_pred ccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHH
Q 044770 23 PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLV 102 (464)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li 102 (464)
+.+...+..++..+..+..++-...+...|.. +.-+...|..++..|... ..+.-..+++++.+-.-+......-+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~---~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLE---YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHH
Q ss_pred HHHHhhCcHHHHHHHHHHHHHcCCC-CchhhHHHHHHHhcC--CCCcccHHHHHHHHHh-CCCCCChhhHHHHHHHHHcc
Q 044770 103 IACLDKGVIKLSLEYMKKMRVLGHS-ISYLVFNRLIILNSS--PGRRKTIPNILRQMKA-DKVAPHVSTFHILMKIEAND 178 (464)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 178 (464)
.-+...++-+.+...|.+....=++ .-.....-+-.-+.. ..+.+....+...+.. .|...-...+.-+-.-|...
T Consensus 139 a~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 139 ADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Q ss_pred CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHh--------------------cChhhHHHHHHHHHH
Q 044770 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV--------------------ARLYTVAETYVEALE 227 (464)
Q Consensus 179 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--------------------~~~~~~a~~~~~~~~ 227 (464)
.++++|++++..+.+.. ..|...-..++.-+-. -.++..+..-|+...
T Consensus 219 eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 219 ENWTEAIRILKHILEHD-EKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred cCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHh
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.09 E-value=8 Score=31.67 Aligned_cols=21 Identities=14% Similarity=-0.026 Sum_probs=8.7
Q ss_pred HHHHHHHHHhhCcHHHHHHHH
Q 044770 98 YNNLVIACLDKGVIKLSLEYM 118 (464)
Q Consensus 98 ~~~li~~~~~~~~~~~a~~~~ 118 (464)
-..+++.+|-.|++++|+.-+
T Consensus 38 RhflfqLlcvaGdw~kAl~Ql 58 (273)
T COG4455 38 RHFLFQLLCVAGDWEKALAQL 58 (273)
T ss_pred hhHHHHHHhhcchHHHHHHHH
Confidence 333444444444444444333
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.01 E-value=31 Score=29.39 Aligned_cols=233 Identities=14% Similarity=0.120 Sum_probs=125.0
Q ss_pred CCCCCChhhHHHHHHHH-HccCChhHHHHHHHHHHhCCCCCcHhH---HHHHHHHHHhcChhhHHHHHHHHHHhc---cC
Q 044770 159 DKVAPHVSTFHILMKIE-ANDHNIEGLMKVYSDMKRSEVEPNEVS---YCILATAHAVARLYTVAETYVEALEKS---MT 231 (464)
Q Consensus 159 ~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~---~~ 231 (464)
.+-.||+..=|..-..- .+...+++|+.-|++..+......... ...++....+.+++++.+..|.++... .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34567776544333221 234578888888888876532333333 345667777788888877777776432 11
Q ss_pred CCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhc-cccCCh----hh
Q 044770 232 GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV-KQLKAT----EQ 306 (464)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~----~~ 306 (464)
.. ..+..+.|++++.-....+.+.-..+++.-.+. ....+. .|
T Consensus 100 Tr--------------------------------NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 100 TR--------------------------------NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred hc--------------------------------cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 11 111122333333333333333333333322110 000111 12
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCC-----------ccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhc
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCK-----------PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR 375 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 375 (464)
-..+...|...+.+.....+++++....-. .-...|..=|+.|....+-.....++++++ .-.
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal------hiK 221 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL------HIK 221 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH------Hhh
Confidence 344566667777777777777777542110 012457777888888888888888998875 223
Q ss_pred CCCCcHHHHHHHHHH-----HHhcCChhhHHH-HHHHHH---HcCCCCcHH--HHHHHHHHHHHcC
Q 044770 376 SSTPWLETTLSIIEI-----FAEKGDVGNAEN-LFEELK---KANYTKYTF--VYNTLIKAYVKAK 430 (464)
Q Consensus 376 ~~~p~~~~~~~li~~-----~~~~g~~~~A~~-~~~~m~---~~~~~p~~~--~~~~li~~~~~~g 430 (464)
..-|.+... .+|+- ..+.|++++|.. +|+... +.|-+.... -|-.|...+.++|
T Consensus 222 SAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 222 SAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred ccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 444554432 23333 346788888764 344433 445322222 5677778888887
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=81.76 E-value=3 Score=24.16 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=23.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC
Q 044770 386 SIIEIFAEKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~~ 411 (464)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47789999999999999999999754
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.25 E-value=37 Score=29.70 Aligned_cols=69 Identities=9% Similarity=-0.068 Sum_probs=32.5
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGC 349 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 349 (464)
-...+.++.+.|+. .|...+-...+.+ + .....+.++...|.. +|+..+..+.+. .||...-...+.+|
T Consensus 209 R~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 209 RIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 33444555555542 3333333333321 1 123455666666663 566666666552 23555544445444
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.28 E-value=1.2e+02 Score=34.93 Aligned_cols=315 Identities=10% Similarity=0.001 Sum_probs=167.2
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCC--CCCchhHHHHHHHHHhhcChHHHHHHhhh-cCCCCCchhHHHHHHHHHHh
Q 044770 31 HSINRLRKLQLNKRALEVMEWVIRERPY--RPKELDYSYLLEFTIKNHGISQGEKLFCC-IPKDYQNELLYNNLVIACLD 107 (464)
Q Consensus 31 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~li~~~~~ 107 (464)
.+..+-.+.+.+..|+-.++.-.. ... .-....|-.+...|+.-+++|...-+... ... |+ ....|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~-~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~--~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRS-TEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD--PS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC--cc---HHHHHHHHHh
Confidence 344556678889999998888411 100 11223345555599999999988888774 222 22 2234455667
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHH-HHHHHHccCChhHHHH
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI-LMKIEANDHNIEGLMK 186 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~ 186 (464)
.|++..|...|+.+.+.+ ++...+++.++......|.++.+....+...... .+....++. =+.+-.+.+++|....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999864 3347778888887777888888777666554432 344444433 3455577888887776
Q ss_pred HHHHHHhCCCCCcHhHHHHH--HHHHHhc--ChhhHHHHHHHHHHhccCCC---------ChhhHHHHHHHHHhhcChhh
Q 044770 187 VYSDMKRSEVEPNEVSYCIL--ATAHAVA--RLYTVAETYVEALEKSMTGN---------NWSTLDVLIILYGYLAKGKD 253 (464)
Q Consensus 187 ~~~~m~~~~~~p~~~~~~~l--i~~~~~~--~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~ 253 (464)
... . . +..+|... .....+. ++.-.-.+..+.++..-+.| -...|..++..+.-. +
T Consensus 1540 ~l~--~-~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----e 1608 (2382)
T KOG0890|consen 1540 YLS--D-R----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----E 1608 (2382)
T ss_pred hhh--c-c----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----H
Confidence 665 1 1 33334333 2222222 22211222333332221111 012233333332211 1
Q ss_pred HHHHHHHhccCCCCc-----hhhHHHHHHHhhccCChHHHHHHHHH-HHhccccC-----ChhhHHHHHHHHHhcCChhH
Q 044770 254 LERIWATVQELPNVR-----SKSYVLAIEAFGRIAQVSRAEELWLE-MQSVKQLK-----ATEQYNSVISVYCKNGFIDK 322 (464)
Q Consensus 254 a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~-----~~~~~~~li~~~~~~~~~~~ 322 (464)
-....+.+......+ ..-|..-+..-....+..+-.--+++ +......| -..+|-........+|+++.
T Consensus 1609 l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1609 LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 111111111111111 11122222111111111111111111 11111111 24567777777778999999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHH
Q 044770 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 323 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 367 (464)
|...+-+..+.+ .| ..+..........|+...|+.+++..+.
T Consensus 1689 A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1689 AQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 988877777654 22 3445566678889999999999998864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.0 bits (133), Expect = 2e-08
Identities = 25/223 (11%), Positives = 63/223 (28%), Gaps = 6/223 (2%)
Query: 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA 209
+ QM A P +E + + M+ + + E
Sbjct: 7 HHRKVQMGAKDATPVPCG-RWAKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQ 65
Query: 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRS 269
L +E + + W ++ D+E+ + +
Sbjct: 66 VEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSG 125
Query: 270 --KSYVLAIEAFGRIAQVSRAEELWL---EMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324
+ + + Q+ A L + + ++L + YN+V+ + + G +
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367
+L + G P+ ++Y + + + M
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS 228
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.0 bits (115), Expect = 3e-06
Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 3/127 (2%)
Query: 115 LEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174
+ ++ G L F + +L + + + + + ++ +M
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG 174
Query: 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN 234
A + L+ V +K + + P+ +SY + R A T +E + M+
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAA--LQCMGRQDQDAGT-IERCLEQMSQEG 231
Query: 235 WSTLDVL 241
+
Sbjct: 232 LKLQALF 238
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.5 bits (111), Expect = 7e-06
Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 5/80 (6%)
Query: 381 LETTLSIIEIFAEKGDVGNAENLFEELK---KANYTKYTFVYNTLIKAYVKAKINDP--N 435
+ L+ + + A +L + +YN ++ + +
Sbjct: 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVY 186
Query: 436 LLRRMILGGARPDAETYSLL 455
+L + G PD +Y+
Sbjct: 187 VLFMVKDAGLTPDLLSYAAA 206
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.8 bits (104), Expect = 5e-05
Identities = 24/249 (9%), Positives = 70/249 (28%), Gaps = 9/249 (3%)
Query: 119 KKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND 178
K+++ S + R + + ++ + + +P L++
Sbjct: 46 AKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGK 105
Query: 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238
+++ ++++ + + +A + TL
Sbjct: 106 LSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL 165
Query: 239 DVLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRA-EEL 291
D+ + A+ + + + + P++ S Y A++ GR Q + E
Sbjct: 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS--YAAALQCMGRQDQDAGTIERC 223
Query: 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK 351
+M ++S + + + S+ P + L +
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 352 SNLVEEGFK 360
+ K
Sbjct: 284 KDGRVSYPK 292
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 2e-07
Identities = 67/478 (14%), Positives = 138/478 (28%), Gaps = 160/478 (33%)
Query: 23 PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGE 82
+ I + RL K + + L V+ V K + F +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNV-----QNAKAWNA-----FNLS-------- 265
Query: 83 KLFCCIPKDYQNELLYNNLVIACLDKGVI-KLSLEYMKKMRVLGHSISYL------VFNR 135
C I L+ K V LS + + HS++ + +
Sbjct: 266 ---CKI------------LLTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 136 LIILNSSPGRRKTIPNILRQMKADKVAP-HVSTFHILMKIEAN------DHNIEGLMKVY 188
L+ P + +P R++ P +S ++ N + L +
Sbjct: 310 --YLDCRP---QDLP---REVL--TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI- 358
Query: 189 SDMKRS--EVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246
++ S +EP E +++ + + +L +++
Sbjct: 359 --IESSLNVLEPAEYR-----------KMFDRLSVFPP--------SAHIPTILLSLIWF 397
Query: 247 YLAKGKDLERIWATVQELPNV-----RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301
+ D+ + V +L + K ++I S EL +++++ L
Sbjct: 398 DV-IKSDVMVV---VNKLHKYSLVEKQPKESTISIP--------SIYLELKVKLENEYAL 445
Query: 302 --KATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY------RHLALGCFKSN 353
+ YN + + + I P Y HL
Sbjct: 446 HRSIVDHYN-IPKTFDSDDLI---------------PPYLDQYFYSHIGHHLK----NIE 485
Query: 354 LVEE--GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411
E F+ + L + + K ST W G+ N ++LK
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAW--------------NASGSILNTLQQLKF-- 529
Query: 412 YTKYTFVYNTLIKAYVKAKIN-----DPNLLRRMILGGARPDAETYSLLKLAEQFQKK 464
Y Y + + V A ++ + NL+ ++ LL++A + +
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLIC----------SKYTDLLRIALMAEDE 577
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 6e-06
Identities = 43/322 (13%), Positives = 97/322 (30%), Gaps = 108/322 (33%)
Query: 169 HILMKIEAN--DHNIEGLMKVY-------------SDMKRSEVEPNEVSYCILATAHAVA 213
H M E + + ++ V+ DM +S + E+ + I+ + AV+
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-IIMSKDAVS 62
Query: 214 RLYTV--------AETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELP 265
+ E + +E+ + N Y +L T Q P
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRIN-----------YKFLMSP------IKTEQRQP 105
Query: 266 NVRSKSYVLAIEAFGRIAQ------VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319
++ ++ Y+ + Q VSR + Q++ +L+ + + + G
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR-PAKN---VLID---G- 157
Query: 320 IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP 379
+ G G K+ + + + KV+
Sbjct: 158 ------------VLGS------------G--KTWVALDVCLS----------YKVQCKMD 181
Query: 380 ----WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKINDPN 435
W L++ + + + + L ++ N+T + + + +
Sbjct: 182 FKIFW----LNLKNCNSPETVLEMLQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQ----A 232
Query: 436 LLRRMILGGARPDAETYSLLKL 457
LRR++ + LL L
Sbjct: 233 ELRRLLKSKPYEN----CLLVL 250
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.75 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.68 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.67 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.61 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.58 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.55 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.53 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.53 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.5 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.48 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.45 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.44 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.44 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.43 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.39 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.37 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.29 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.25 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.24 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.23 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.23 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.22 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.21 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.2 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.18 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.07 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.06 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.04 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.04 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.01 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.99 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.99 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.98 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.97 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.96 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.96 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.94 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.94 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.94 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.93 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.93 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.92 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.91 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.91 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.89 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.88 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.85 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.83 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.83 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.83 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.82 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.77 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.77 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.72 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.71 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.7 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.67 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.64 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.63 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.62 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.62 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.61 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.6 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.56 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.56 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.55 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.53 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.52 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.52 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.52 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.52 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.5 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.5 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.5 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.5 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.49 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.47 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.47 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.45 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.44 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.42 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.41 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.39 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.39 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.35 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.33 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.33 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.32 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.3 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.29 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.28 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.27 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.26 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.26 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.26 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.26 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.26 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.25 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.24 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.24 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.2 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.18 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.17 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.16 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.15 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.14 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.12 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.12 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.1 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.07 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.04 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.01 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.98 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.98 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.96 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.95 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.94 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.93 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.88 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.87 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.82 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.82 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.79 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.79 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.75 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.67 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.66 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.61 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.61 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.55 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.48 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.46 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.41 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.39 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.36 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.31 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.29 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.28 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.28 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.23 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.18 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.14 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.05 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.01 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.94 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.65 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.56 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.48 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.34 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.3 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.12 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.01 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.87 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.84 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.73 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.69 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.66 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.63 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.61 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.2 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.16 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.09 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.93 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.76 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.26 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.07 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.53 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.7 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 92.62 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.58 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.68 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.46 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.27 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.06 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.41 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.95 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.68 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.38 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.08 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.63 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.95 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.4 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 86.76 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 86.16 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 85.65 | |
| 3eiq_C | 358 | Programmed cell death protein 4; PDCD4, anti-oncog | 85.32 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.47 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.86 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 82.6 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 80.99 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 80.29 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=306.43 Aligned_cols=408 Identities=9% Similarity=-0.035 Sum_probs=230.4
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIA 104 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~ 104 (464)
+...+..++..+.+.|++++|+.+|+.+... .|+..++..++..|.+.|++++|..+|+.+....++..+++.++.+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 3344455555555555555555555555431 2344455555555555555555555555554333444555555555
Q ss_pred HHhhCcHHHHHHHHHHHHHc---------------CCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCC---------
Q 044770 105 CLDKGVIKLSLEYMKKMRVL---------------GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK--------- 160 (464)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------- 160 (464)
|.+.|++++|+++|+++... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 55555555555555422111 112234455555555555555555555555544322
Q ss_pred -------------------------------------------------------------CCCChhhHHHHHHHHHccC
Q 044770 161 -------------------------------------------------------------VAPHVSTFHILMKIEANDH 179 (464)
Q Consensus 161 -------------------------------------------------------------~~~~~~~~~~l~~~~~~~~ 179 (464)
.+++..+|+.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 0355556666666666666
Q ss_pred ChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHH
Q 044770 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA 259 (464)
Q Consensus 180 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (464)
++++|.++|+++.+.+ +.+..+|..++.++.+.|++++|..+++++.+. .+.+..++..++.+|.+.|++++|.++|+
T Consensus 320 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 6666666666665543 224555666666666666666666666666543 33455566666666666666666666666
Q ss_pred HhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH
Q 044770 260 TVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339 (464)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 339 (464)
.+....+.+..+|+.++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+.
T Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 475 (597)
T 2xpi_A 398 KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDP 475 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 665544455556666666666666666666666666653 23355666666666666666666666666666542 2245
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc--HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHH
Q 044770 340 ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW--LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417 (464)
Q Consensus 340 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 417 (464)
.+|..++..|.+.|++++|.++|+.+++... ..+..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 551 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVK---KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDAN 551 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh---ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChH
Confidence 6666666666666666666666666643321 1244555 5566666666666666666666666666554 22455
Q ss_pred HHHHHHHHHHHcCCC--hhHHHHHHHhC
Q 044770 418 VYNTLIKAYVKAKIN--DPNLLRRMILG 443 (464)
Q Consensus 418 ~~~~li~~~~~~g~~--a~~~~~~m~~~ 443 (464)
+|..+..+|.+.|+. |.+.|+++.+.
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 666666666666653 66666666653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=302.46 Aligned_cols=400 Identities=9% Similarity=-0.047 Sum_probs=327.7
Q ss_pred CcchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhc
Q 044770 9 PVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCI 88 (464)
Q Consensus 9 ~~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 88 (464)
.+..+++.+. +..|+..++..++..+.+.|++++|+.+|+.+.. .+++..+++.++.+|.+.|++++|.++|+++
T Consensus 102 ~A~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 176 (597)
T 2xpi_A 102 CAAFVGEKVL--DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGET 176 (597)
T ss_dssp HHHHHHHHHH--HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSS
T ss_pred HHHHHHHHHH--hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 3455666665 3456778889999999999999999999998865 3678899999999999999999999999964
Q ss_pred CCC-----------------CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCC-------------------------
Q 044770 89 PKD-----------------YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH------------------------- 126 (464)
Q Consensus 89 ~~~-----------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------------------- 126 (464)
... ..+..+|+.++.+|.+.|++++|+++|++|.+.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 256 (597)
T 2xpi_A 177 NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVL 256 (597)
T ss_dssp CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHH
Confidence 332 12578999999999999999999999999876432
Q ss_pred ---------------------------------------------CCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCC
Q 044770 127 ---------------------------------------------SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV 161 (464)
Q Consensus 127 ---------------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (464)
+++..+++.++..|.+.|++++|.++|+++.+.+
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 335 (597)
T 2xpi_A 257 KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID- 335 (597)
T ss_dssp HSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-
Confidence 2567788899999999999999999999999866
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHH
Q 044770 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241 (464)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (464)
+.+..+++.++.++.+.|++++|..+++++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. .+.+..+++.+
T Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l 413 (597)
T 2xpi_A 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-DPQFGPAWIGF 413 (597)
T ss_dssp TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 5688899999999999999999999999998653 457889999999999999999999999999875 34567899999
Q ss_pred HHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChh
Q 044770 242 IILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFID 321 (464)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 321 (464)
+.++.+.|++++|.++++.+....+.+..+|..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++..|.+.|+++
T Consensus 414 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 414 AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-FQYDPLLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHH
Confidence 999999999999999999999877778889999999999999999999999999984 3457889999999999999999
Q ss_pred HHHHHHHHHHhC----CCCccH-HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCC
Q 044770 322 KASGLLKEMSMN----GCKPNA-ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGD 396 (464)
Q Consensus 322 ~a~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 396 (464)
+|.++|+++.+. +..|+. ......+...... ..-++++.+........+ +.+..+|..+..+|.+.|+
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK------LKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH------hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC
Confidence 999999999875 556664 2222222222222 222334433333222222 3478899999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCc-HHHHHHHHHHH
Q 044770 397 VGNAENLFEELKKANYTKY-TFVYNTLIKAY 426 (464)
Q Consensus 397 ~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 426 (464)
+++|.+.|+++.+.. |+ ...|..+...|
T Consensus 566 ~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 566 PGLAITHLHESLAIS--PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC--CCChHHHHHHHHHH
Confidence 999999999999864 54 44666665544
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=259.18 Aligned_cols=214 Identities=8% Similarity=0.065 Sum_probs=171.1
Q ss_pred HHHHHHHHHhCCCCCcH-hHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhc
Q 044770 184 LMKVYSDMKRSEVEPNE-VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQ 262 (464)
Q Consensus 184 a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (464)
+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.+....
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~--------- 79 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE--------- 79 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS---------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh---------
Confidence 34444555555443332 34566666666666666666666666666666666666666666665544322
Q ss_pred cCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHH
Q 044770 263 ELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITY 342 (464)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 342 (464)
..+.+.++.|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 80 ----------------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 143 (501)
T 4g26_A 80 ----------------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143 (501)
T ss_dssp ----------------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred ----------------hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence 1234567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHH
Q 044770 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422 (464)
Q Consensus 343 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 422 (464)
+.+|.+|++.|++++|.++|++| ...|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.+
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M-------~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHM-------VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-------HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHHHH-------HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 99999999999999999999999 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc
Q 044770 423 IKAYVKA 429 (464)
Q Consensus 423 i~~~~~~ 429 (464)
+..|+..
T Consensus 217 ~~~F~s~ 223 (501)
T 4g26_A 217 EEWFKSE 223 (501)
T ss_dssp HHHHHSH
T ss_pred HHHHhcC
Confidence 9999875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=256.46 Aligned_cols=184 Identities=16% Similarity=0.123 Sum_probs=175.7
Q ss_pred hhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCC---------hhHHHHHHHHHHhCCCCccHH
Q 044770 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF---------IDKASGLLKEMSMNGCKPNAI 340 (464)
Q Consensus 270 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~g~~p~~~ 340 (464)
..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788999999999999999999999999999999999999999988765 678999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHH
Q 044770 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYN 420 (464)
Q Consensus 341 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 420 (464)
||+++|.+|++.|++++|.++|++| ...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M-------~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~ 179 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQM-------KAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELA 179 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH-------HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH-------HHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 9999999999999999999999999 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC--hhHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044770 421 TLIKAYVKAKIN--DPNLLRRMILGGARPDAETYSLLKLAEQ 460 (464)
Q Consensus 421 ~li~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~L~~~~~ 460 (464)
+||.+|++.|+. |.++|++|++.|+.|+..||++|+..+.
T Consensus 180 ~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 180 ALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 999999999984 9999999999999999999999977653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-29 Score=227.43 Aligned_cols=380 Identities=10% Similarity=-0.010 Sum_probs=321.0
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCc
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGV 110 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~ 110 (464)
+...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++..... +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 4566788999999999999998843 334556677777889999999999999887766 4467899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 044770 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190 (464)
Q Consensus 111 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (464)
+++|+..|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999863 3356679999999999999999999999998864 44456677888999999999999999999
Q ss_pred HHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchh
Q 044770 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270 (464)
Q Consensus 191 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 270 (464)
+.+.. +.+..+|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...++......+.+..
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence 98763 2357789999999999999999999999998863 345678888999999999999999999988887777778
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 350 (464)
++..+...|...|++++|...|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 89999999999999999999999998843 3356789999999999999999999999998853 447788999999999
Q ss_pred hcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc-HHHHHHHHHHHHH
Q 044770 351 KSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY-TFVYNTLIKAYVK 428 (464)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 428 (464)
..|++++|...+++++ ...| +..++..+...|.+.|++++|...|+++.+. .|+ ...|..+...+..
T Consensus 317 ~~g~~~~A~~~~~~al---------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKAL---------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKE 385 (388)
T ss_dssp TTTCHHHHHHHHHHHT---------TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH---------hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHH
Confidence 9999999999999983 2334 5778889999999999999999999999875 354 4477777777666
Q ss_pred cC
Q 044770 429 AK 430 (464)
Q Consensus 429 ~g 430 (464)
.|
T Consensus 386 ~~ 387 (388)
T 1w3b_A 386 MQ 387 (388)
T ss_dssp TC
T ss_pred cc
Confidence 55
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-26 Score=213.05 Aligned_cols=371 Identities=12% Similarity=0.063 Sum_probs=317.3
Q ss_pred HHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCc
Q 044770 68 LLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146 (464)
Q Consensus 68 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (464)
+...+.+.|++++|.+.++.+....| +...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 45567789999999999998876644 56777888888999999999999999998864 56788999999999999999
Q ss_pred ccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHHHHHHH
Q 044770 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEA 225 (464)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~ 225 (464)
++|...|+++.+.. +.+...|..+..++.+.|++++|.+.|+++.+. .|+ ...+..+...+...|++++|...|++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999998754 445668999999999999999999999999876 344 45677788888999999999999999
Q ss_pred HHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChh
Q 044770 226 LEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE 305 (464)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 305 (464)
+... .+.+..++..+...+...|++++|...++.+....+.....+..+...+...|++++|...|++..... +.+..
T Consensus 161 al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 161 AIET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 9876 344678899999999999999999999999998777778889999999999999999999999998743 33678
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHH
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ 385 (464)
++..+..+|...|++++|...|+++.+... .+..++..+...+.+.|++++|...++.+++. .+.+..++.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~ 309 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLN 309 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHH
Confidence 899999999999999999999999998532 25678999999999999999999999999532 345778899
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCH-HHHHHHH
Q 044770 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLLRRMILGGARPDA-ETYSLLK 456 (464)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~-~t~~~L~ 456 (464)
.+...+.+.|++++|...++++.+.. +.+..+|..+...+.+.|+. |...|+++.+ +.|+. ..+..|-
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg 380 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 380 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHH
Confidence 99999999999999999999998753 33566999999999999985 9999999987 45654 4444443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-24 Score=204.68 Aligned_cols=407 Identities=9% Similarity=0.002 Sum_probs=254.0
Q ss_pred hhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHH
Q 044770 26 RGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIA 104 (464)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~ 104 (464)
...+......+.+.|++++|+..|+.+.+. .|+...+..+..++...|++++|.+.|+++....| +..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 345677788899999999999999999984 37889999999999999999999999999877644 67899999999
Q ss_pred HHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC-----------------------------------CcccH
Q 044770 105 CLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG-----------------------------------RRKTI 149 (464)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-----------------------------------~~~~a 149 (464)
+...|++++|+..|+++...+. ++......++..+.... .....
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999988652 23332222222211100 01111
Q ss_pred HHHHHHHHhCCC---------CCChhhHHHHHHHHHc---cCChhHHHHHHHHHHh-----C--CC------CCcHhHHH
Q 044770 150 PNILRQMKADKV---------APHVSTFHILMKIEAN---DHNIEGLMKVYSDMKR-----S--EV------EPNEVSYC 204 (464)
Q Consensus 150 ~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~--~~------~p~~~~~~ 204 (464)
..+...+..... +.+...+......+.. .|++++|..+|+++.+ . .. +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111000 1113333333333333 6667777777766655 2 10 12344556
Q ss_pred HHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCC
Q 044770 205 ILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQ 284 (464)
Q Consensus 205 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (464)
.+...+...|++++|...++++.+.... ..++..+..++...|++++|...++.+....+.+...+..+...+...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 6666666677777777777666655332 56666666666677777777777766666555555566666666667777
Q ss_pred hHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 044770 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALEL 364 (464)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 364 (464)
+++|...|+...+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777776666532 2345566666666666777777777776666532 12345566666666666777777777766
Q ss_pred hHHHHhhhhhcCCCCcHHHHHHHHHHHHh---cCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHHHH
Q 044770 365 GMKLITTKKVRSSTPWLETTLSIIEIFAE---KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLLRR 439 (464)
Q Consensus 365 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~~~ 439 (464)
+++.... .....-....+..+...+.. .|++++|...++++.+.. +.+..+|..+...|.+.|+. |...|++
T Consensus 398 a~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 398 AIELENK--LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHT--SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhhc--cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6654321 11111113455566666666 677777777776666543 12344666666666666653 6666666
Q ss_pred HHhC
Q 044770 440 MILG 443 (464)
Q Consensus 440 m~~~ 443 (464)
..+.
T Consensus 475 a~~~ 478 (514)
T 2gw1_A 475 SADL 478 (514)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-23 Score=196.46 Aligned_cols=382 Identities=12% Similarity=0.015 Sum_probs=279.1
Q ss_pred hhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcC
Q 044770 63 LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS 142 (464)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 142 (464)
..+......+.+.|++++|...|+++....|+..+|..+..++...|++++|+..++++.+.+ +.+..++..+..++.+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 456777888999999999999999998877899999999999999999999999999999875 4467889999999999
Q ss_pred CCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh-----------------------------
Q 044770 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR----------------------------- 193 (464)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----------------------------- 193 (464)
.|++++|...|+.+.+.+ +++......++..+........+.+.+..+..
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999999876 45555555555544443332222222211110
Q ss_pred ------CCC---------CCcHhHHHHHHHHHHh---cChhhHHHHHHHHHHh-----ccC--------CCChhhHHHHH
Q 044770 194 ------SEV---------EPNEVSYCILATAHAV---ARLYTVAETYVEALEK-----SMT--------GNNWSTLDVLI 242 (464)
Q Consensus 194 ------~~~---------~p~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~ 242 (464)
... +.+...+......+.. .|++++|..+++++.+ ... +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 000 1113344444444444 8999999999999987 211 22356788889
Q ss_pred HHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhH
Q 044770 243 ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322 (464)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 322 (464)
..+...|++++|...++.+....+. ...+..+...+...|++++|...++.+.+. .+.+...|..+...+...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKL-DSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-CTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc-CcCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999998874444 788999999999999999999999999884 34467789999999999999999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHh---cCC-hh
Q 044770 323 ASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE---KGD-VG 398 (464)
Q Consensus 323 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~-~~ 398 (464)
|...++++.+.... +...+..+...+...|++++|...++.+++. ... +...+..+...|.+ ... ..
T Consensus 323 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~--~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 323 AGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK------FPE--APEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH------STT--CSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------ccc--CHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999985422 5678888899999999999999999999643 222 33455555555532 222 22
Q ss_pred hHHHHHHHHHHcCCC-CcHHHHHHHHHHHHH---cCCC--hhHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 044770 399 NAENLFEELKKANYT-KYTFVYNTLIKAYVK---AKIN--DPNLLRRMILGGARPD-AETYSLLKLAE 459 (464)
Q Consensus 399 ~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~---~g~~--a~~~~~~m~~~~~~p~-~~t~~~L~~~~ 459 (464)
...+.++.....+.. -....|..+...+.. .|+. |...+++..... |+ ..++..+..++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSEQAKIGLAQMK 459 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 223333334443211 114589999999999 8874 899999988753 53 44445444443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-23 Score=193.76 Aligned_cols=316 Identities=8% Similarity=-0.062 Sum_probs=263.5
Q ss_pred CccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCC-CchhHHHH
Q 044770 22 FPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY-QNELLYNN 100 (464)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ 100 (464)
.|.+...+..+...+.+.|++++|+.+|+.+.+.. +.+...+..+...+...|++++|...|+++.... .+..+|..
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 34567778889999999999999999999998843 4567889999999999999999999999987763 46789999
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCch---hhHHHH------------HHHhcCCCCcccHHHHHHHHHhCCCCCCh
Q 044770 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISY---LVFNRL------------IILNSSPGRRKTIPNILRQMKADKVAPHV 165 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (464)
+...|...|++++|...|+++.+.+ +.+. ..+..+ ...+...|++++|...|+.+.+.. +.+.
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 9999999999999999999999864 2233 555555 344888999999999999998764 5678
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHH----
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL---- 241 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 241 (464)
.++..+..+|.+.|++++|...|+++.+.. +.+..+|..+..++...|++++|...++++.... +.+...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 889999999999999999999999998753 3468899999999999999999999999998652 3344444444
Q ss_pred --------HHHHHhhcChhhHHHHHHHhccCCCCc----hhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHH
Q 044770 242 --------IILYGYLAKGKDLERIWATVQELPNVR----SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNS 309 (464)
Q Consensus 242 --------~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 309 (464)
...+...|++++|...++.+....+.+ ...+..+...+.+.|++++|...++.+.+. .+.+...|..
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~ 334 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHH
Confidence 788999999999999999988744444 336888899999999999999999999874 3346789999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcc-HHHHHHHH
Q 044770 310 VISVYCKNGFIDKASGLLKEMSMNGCKPN-AITYRHLA 346 (464)
Q Consensus 310 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll 346 (464)
+..+|...|++++|...|+++.+ +.|+ ...+..+.
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 99999999999999999999998 4564 44444444
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-22 Score=189.81 Aligned_cols=314 Identities=10% Similarity=0.034 Sum_probs=240.1
Q ss_pred CchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHH
Q 044770 93 QNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILM 172 (464)
Q Consensus 93 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (464)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 356677777777888888888888888777653 3456777777777778888888888888877654 45566777778
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCc-H---hHHHHH------------HHHHHhcChhhHHHHHHHHHHhccCCCChh
Q 044770 173 KIEANDHNIEGLMKVYSDMKRSEVEPN-E---VSYCIL------------ATAHAVARLYTVAETYVEALEKSMTGNNWS 236 (464)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~m~~~~~~p~-~---~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (464)
.+|.+.|++++|...|+++.+.. |+ . ..+..+ ...+.+.|++++|...++++.+. .+.+..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~ 178 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-CVWDAE 178 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChH
Confidence 88888888888888888877653 33 2 444444 33477888889999988888775 345677
Q ss_pred hHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHH------
Q 044770 237 TLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV------ 310 (464)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 310 (464)
++..+..++...|++++|...++.+....+.+..++..+...|...|++++|...|+.+.... +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 888888888889999999998888877666677788889999999999999999999888632 2234444444
Q ss_pred ------HHHHHhcCChhHHHHHHHHHHhCCCCcc-----HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC
Q 044770 311 ------ISVYCKNGFIDKASGLLKEMSMNGCKPN-----AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP 379 (464)
Q Consensus 311 ------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p 379 (464)
...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++.+++. .+.
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~ 327 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPD 327 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------Ccc
Confidence 78889999999999999999884 454 346788888899999999999999998532 233
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc-HHHHHHHHH
Q 044770 380 WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY-TFVYNTLIK 424 (464)
Q Consensus 380 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~ 424 (464)
+...|..+..+|...|++++|...|+++.+.. |+ ...+..+..
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 371 (450)
T 2y4t_A 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEHN--ENDQQIREGLEK 371 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cchHHHHHHHHH
Confidence 67888999999999999999999999998853 54 446665553
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-22 Score=192.23 Aligned_cols=405 Identities=10% Similarity=0.046 Sum_probs=309.2
Q ss_pred cChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHH
Q 044770 24 VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLV 102 (464)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li 102 (464)
.....+......+.+.|++++|++.|+.+.+.. +.+...+..+..++...|++++|.+.|+++... +.+..+|..+.
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 100 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 345677888899999999999999999999854 456788999999999999999999999998776 34678899999
Q ss_pred HHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCC------CCCChh----------
Q 044770 103 IACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK------VAPHVS---------- 166 (464)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~---------- 166 (464)
..+...|++++|+..|+.+ .. .|+.. ...+..+...+....|...++.+.... ..|+..
T Consensus 101 ~~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 9999999999999999633 32 22211 111222333333456777777664420 111111
Q ss_pred --------------------hHHHHHHHHHc--------cCChhHHHHHHHHHHhCCCCCc--------HhHHHHHHHHH
Q 044770 167 --------------------TFHILMKIEAN--------DHNIEGLMKVYSDMKRSEVEPN--------EVSYCILATAH 210 (464)
Q Consensus 167 --------------------~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~p~--------~~~~~~li~~~ 210 (464)
....+...+.. .|++++|..+|+++.+.. |+ ..++..+...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHH
Confidence 22222222222 247899999999998763 33 23466677788
Q ss_pred HhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHH
Q 044770 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290 (464)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 290 (464)
...|++++|...++++.+.. |+..++..+...+...|+++.|...++.+....+.+..++..+...+...|++++|..
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 89999999999999998864 4478888999999999999999999999988777778889999999999999999999
Q ss_pred HHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHh
Q 044770 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLIT 370 (464)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 370 (464)
.|++..+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+++...
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 999998843 3467789999999999999999999999998853 23567888889999999999999999999987654
Q ss_pred hhhhcCCCCcHHHHHHHHHHHHhc----------CChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHHH
Q 044770 371 TKKVRSSTPWLETTLSIIEIFAEK----------GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLLR 438 (464)
Q Consensus 371 ~~~~~~~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~~ 438 (464)
. ..........+..+...+... |++++|...|+++.+.. +.+...|..+...|.+.|+. |.+.|+
T Consensus 410 ~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 410 V--QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp H--CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred c--chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2 222222333445666778888 99999999999999864 23566899999999999984 999999
Q ss_pred HHHhCC
Q 044770 439 RMILGG 444 (464)
Q Consensus 439 ~m~~~~ 444 (464)
+..+..
T Consensus 487 ~al~~~ 492 (537)
T 3fp2_A 487 DSAILA 492 (537)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998864
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-20 Score=177.46 Aligned_cols=388 Identities=10% Similarity=-0.022 Sum_probs=297.7
Q ss_pred CCCCCcchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHH
Q 044770 5 PRGEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKL 84 (464)
Q Consensus 5 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 84 (464)
.+...+...++...+.. |.+...+..+...+...|++++|++.++.+.+.. +.+...+..+..++...|++++|...
T Consensus 39 g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp TCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34567778888877764 4577888999999999999999999999999854 34677889999999999999999999
Q ss_pred hhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcC------CCCchh---------------------------
Q 044770 85 FCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG------HSISYL--------------------------- 131 (464)
Q Consensus 85 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~--------------------------- 131 (464)
|+.+... |+ ..+..+..+...+....|+..++.+.... ..|+..
T Consensus 116 ~~~~~~~-~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (537)
T 3fp2_A 116 LSVLSLN-GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTA 192 (537)
T ss_dssp HHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSS
T ss_pred HHHHhcC-CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccH
Confidence 9755432 22 22233445556666788888888885531 112211
Q ss_pred ---hHHHHHHHhcCC--------CCcccHHHHHHHHHhCCCCCC-------hhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 044770 132 ---VFNRLIILNSSP--------GRRKTIPNILRQMKADKVAPH-------VSTFHILMKIEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 132 ---~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 193 (464)
....+...+... |++++|..+++.+.+.. +.+ ..++..+...+...|++++|...|++..+
T Consensus 193 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~ 271 (537)
T 3fp2_A 193 YALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271 (537)
T ss_dssp HHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 223333333332 37889999999998753 233 23466777888899999999999999988
Q ss_pred CCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHH
Q 044770 194 SEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273 (464)
Q Consensus 194 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (464)
. .|+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+....+.+...+.
T Consensus 272 ~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 348 (537)
T 3fp2_A 272 L--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYI 348 (537)
T ss_dssp H--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHH
T ss_pred c--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6 5667888889999999999999999999998763 456788999999999999999999999999886666778899
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----CccHHHHHHHHHH
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC-----KPNAITYRHLALG 348 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----~p~~~~~~~ll~~ 348 (464)
.+...+...|++++|...|+.+.+. .+.+...+..+...+...|++++|...|+++.+... ......+......
T Consensus 349 ~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 349 QLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 9999999999999999999999984 344677899999999999999999999999876321 1112224444566
Q ss_pred HHhc----------CChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 044770 349 CFKS----------NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 349 ~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 411 (464)
+... |++++|...++.+++. .+.+...+..+...|.+.|++++|...|++..+..
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhccchhhhHhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 7777 9999999999999532 22356778899999999999999999999999864
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-19 Score=163.32 Aligned_cols=314 Identities=11% Similarity=0.034 Sum_probs=197.3
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (464)
...+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3445555566666666666666666666542 2345556666666666666666666666665543 3344556666666
Q ss_pred HHccCChhHHHHHHHHHHhCCCCC----cHhHHHHH------------HHHHHhcChhhHHHHHHHHHHhccCCCChhhH
Q 044770 175 EANDHNIEGLMKVYSDMKRSEVEP----NEVSYCIL------------ATAHAVARLYTVAETYVEALEKSMTGNNWSTL 238 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (464)
+...|++++|...|++..+. .| +...+..+ ...+...|++++|...++++.+. .+.+...+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-CVWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCchHHH
Confidence 66666666666666666654 23 22333332 45666777777777777777665 33455666
Q ss_pred HHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHH----------
Q 044770 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN---------- 308 (464)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---------- 308 (464)
..+..++...|++++|...++.+....+.+...+..+...+...|++++|...|+...+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 6777777777777777777777766666666677777777777777777777777776632 22222222
Q ss_pred --HHHHHHHhcCChhHHHHHHHHHHhCCCCcc-H----HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcH
Q 044770 309 --SVISVYCKNGFIDKASGLLKEMSMNGCKPN-A----ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381 (464)
Q Consensus 309 --~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~ 381 (464)
.+...+.+.|++++|...++++.+.. |+ . ..+..+...+...|++++|...++.+++. .+.+.
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~ 306 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--------EPDNV 306 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CcccH
Confidence 22556777788888888888777643 33 2 22344566777788888888888877431 12256
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc-HHHHHHHHHHH
Q 044770 382 ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY-TFVYNTLIKAY 426 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 426 (464)
..+..+...|.+.|++++|...|+++.+.. |+ ...+..+..+.
T Consensus 307 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 307 NALKDRAEAYLIEEMYDEAIQDYEAAQEHN--ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHH
Confidence 677777888888888888888888877653 44 33555554444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.2e-20 Score=164.97 Aligned_cols=315 Identities=8% Similarity=-0.072 Sum_probs=243.7
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVI 103 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~ 103 (464)
+...+..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...|+++....| +...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34567778889999999999999999998854 34677889999999999999999999999877644 6788999999
Q ss_pred HHHhhCcHHHHHHHHHHHHHcCCC--CchhhHHHH------------HHHhcCCCCcccHHHHHHHHHhCCCCCChhhHH
Q 044770 104 ACLDKGVIKLSLEYMKKMRVLGHS--ISYLVFNRL------------IILNSSPGRRKTIPNILRQMKADKVAPHVSTFH 169 (464)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (464)
.+...|++++|+..|++..+.... .+...+..+ ...+...|++++|...++.+.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999999885320 244455444 477888999999999999998764 56778888
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHH----------
Q 044770 170 ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLD---------- 239 (464)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------- 239 (464)
.+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 89999999999999999999998764 3467788889999999999999999999988753 22333332
Q ss_pred --HHHHHHHhhcChhhHHHHHHHhccCCCCchh----hHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHH
Q 044770 240 --VLIILYGYLAKGKDLERIWATVQELPNVRSK----SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313 (464)
Q Consensus 240 --~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 313 (464)
.+...+...|++++|...++.+....+.+.. .+..+...+...|++++|...++...+. .+.+...|..+...
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHH
Confidence 2255677888888888888877764333332 2445677788888888888888888774 33467778888888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcc-HHHHHHHHH
Q 044770 314 YCKNGFIDKASGLLKEMSMNGCKPN-AITYRHLAL 347 (464)
Q Consensus 314 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 347 (464)
+...|++++|...|++..+. .|+ ...+..+..
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEK 348 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHH
Confidence 88888888888888888874 454 333444333
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-19 Score=160.33 Aligned_cols=301 Identities=7% Similarity=-0.074 Sum_probs=185.8
Q ss_pred cCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCC-CchhHHH
Q 044770 21 GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDY-QNELLYN 99 (464)
Q Consensus 21 g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~ 99 (464)
+.+.+...+......+...|++++|+++|+.+.+.. +.+...+..++..+...|++++|...++++.... .+...|.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH
Confidence 344566667777777777777777777777777643 2344455566666777777777777777665552 3456667
Q ss_pred HHHHHHHhhC-cHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 044770 100 NLVIACLDKG-VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND 178 (464)
Q Consensus 100 ~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (464)
.+...+...| ++++|...|++..+.. +.+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 7777777777 7777777777776643 2345566666666666677777777776666543 33345555566666666
Q ss_pred CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHH
Q 044770 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIW 258 (464)
Q Consensus 179 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (464)
|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+.......
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------------------- 228 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN----------------------- 228 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC-----------------------
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc-----------------------
Confidence 67777776666666543 224555666666666666666666666665443110000
Q ss_pred HHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-
Q 044770 259 ATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP- 337 (464)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p- 337 (464)
....+.....+..+...|...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+. .|
T Consensus 229 ---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 302 (330)
T 3hym_B 229 ---EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRD 302 (330)
T ss_dssp ---SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSC
T ss_pred ---cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCC
Confidence 00012233456677777777777777777777777633 335667777777788888888888888777763 34
Q ss_pred cHHHHHHHHHHH-HhcCCh
Q 044770 338 NAITYRHLALGC-FKSNLV 355 (464)
Q Consensus 338 ~~~~~~~ll~~~-~~~~~~ 355 (464)
+...+..+..++ ...|+.
T Consensus 303 ~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 303 DTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CHHHHHHHHHHHHTTTTC-
T ss_pred chHHHHHHHHHHHHHhCch
Confidence 455566666655 344443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-18 Score=155.64 Aligned_cols=291 Identities=11% Similarity=-0.057 Sum_probs=194.3
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (464)
+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 34445555555555566666666666555542 2234444445555555566666666666655532 334455556666
Q ss_pred HHHccC-ChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChh
Q 044770 174 IEANDH-NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252 (464)
Q Consensus 174 ~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (464)
.+...| ++++|...|++..+.. +.+...|..+..++...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 666666 6666666666665543 2234556666666666666666666666665542 223445555666677777777
Q ss_pred hHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcc--------ccCChhhHHHHHHHHHhcCChhHHH
Q 044770 253 DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK--------QLKATEQYNSVISVYCKNGFIDKAS 324 (464)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~ 324 (464)
+|...++......+.+...+..+...+...|++++|...+++..+.. .+.....|..+...+...|++++|.
T Consensus 177 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 77777777666666666778888888888999999999988877632 1344678999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHH-HhcCChh
Q 044770 325 GLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIF-AEKGDVG 398 (464)
Q Consensus 325 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~-~~~g~~~ 398 (464)
..+++..+.. +.+...+..+...+...|++++|...++.++ ...| +...+..+..++ ...|+.+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---------~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL---------GLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT---------TTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH---------ccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999998853 2256788899999999999999999999983 4455 566777777777 4555543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-19 Score=162.41 Aligned_cols=292 Identities=8% Similarity=-0.097 Sum_probs=232.3
Q ss_pred HhhcChHHHHH-HhhhcCCCCC-----chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCc
Q 044770 73 IKNHGISQGEK-LFCCIPKDYQ-----NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146 (464)
Q Consensus 73 ~~~g~~~~a~~-~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (464)
...|++++|.+ .|++.....| +...+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34578888988 8886655422 34668888999999999999999999999864 45678889999999999999
Q ss_pred ccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHH---------------HHHHHH
Q 044770 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCI---------------LATAHA 211 (464)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---------------li~~~~ 211 (464)
++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+.... +...+.. .+..+.
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 99999999998865 567888999999999999999999999999876422 2222221 234444
Q ss_pred hcChhhHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHH
Q 044770 212 VARLYTVAETYVEALEKSMTGN-NWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290 (464)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 290 (464)
..|++++|...++++.+..... +..++..+...+...|++++|...++.+....+.+...+..+...+...|++++|..
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8999999999999998764332 578889999999999999999999999888777777889999999999999999999
Q ss_pred HHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc----------cHHHHHHHHHHHHhcCChHHHHH
Q 044770 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP----------NAITYRHLALGCFKSNLVEEGFK 360 (464)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----------~~~~~~~ll~~~~~~~~~~~a~~ 360 (464)
.|+++.+.. +.+...+..+..+|.+.|++++|...|+++.+..... ...+|..+..++...|++++|..
T Consensus 273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999998743 3467889999999999999999999999988732111 16789999999999999999999
Q ss_pred HHHHhHHH
Q 044770 361 ALELGMKL 368 (464)
Q Consensus 361 ~~~~~~~~ 368 (464)
++...++.
T Consensus 352 ~~~~~l~~ 359 (368)
T 1fch_A 352 ADARDLST 359 (368)
T ss_dssp HHTTCHHH
T ss_pred hHHHHHHH
Confidence 98877543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-17 Score=157.22 Aligned_cols=406 Identities=13% Similarity=0.057 Sum_probs=294.2
Q ss_pred ccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHH
Q 044770 23 PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLV 102 (464)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li 102 (464)
|-+...+..++. +.+.|+++.|..+|+.+.+.. +.+...|..++..+.+.|++++|..+|++.....|+...|...+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 456777888887 477899999999999999843 45677899999999999999999999999998878888888877
Q ss_pred HHH-HhhCcHHHHHH----HHHHHHHc-CCCC-chhhHHHHHHHhcC---------CCCcccHHHHHHHHHhCCCCCChh
Q 044770 103 IAC-LDKGVIKLSLE----YMKKMRVL-GHSI-SYLVFNRLIILNSS---------PGRRKTIPNILRQMKADKVAPHVS 166 (464)
Q Consensus 103 ~~~-~~~~~~~~a~~----~~~~m~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~ 166 (464)
... ...|+++.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++.++....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 543 34566666654 77776653 5443 45677777766543 678999999999998731111123
Q ss_pred hHHHHHHHH-------------HccCChhHHHHHHHHHH------hCC---CCCc--------HhHHHHHHHHHHhc---
Q 044770 167 TFHILMKIE-------------ANDHNIEGLMKVYSDMK------RSE---VEPN--------EVSYCILATAHAVA--- 213 (464)
Q Consensus 167 ~~~~l~~~~-------------~~~~~~~~a~~~~~~m~------~~~---~~p~--------~~~~~~li~~~~~~--- 213 (464)
.|....... ...++++.|..+++++. +.. ++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 343322211 13456777877777632 221 2443 23455444332221
Q ss_pred -Chh----hHHHHHHHHHHhccCCCChhhHHHHHHHHHh-------hcChh-------hHHHHHHHhcc-CCCCchhhHH
Q 044770 214 -RLY----TVAETYVEALEKSMTGNNWSTLDVLIILYGY-------LAKGK-------DLERIWATVQE-LPNVRSKSYV 273 (464)
Q Consensus 214 -~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~-~~~~~~~~~~ 273 (464)
++. ..+..+|++.... .+.++..|......+.. .|+.+ +|..+++.... ..+.+...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 222 3677889988876 44567788888887775 68877 89999999987 5566778899
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccccCC-h-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHH-HH
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKA-T-EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG-CF 350 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~ 350 (464)
.++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|++++|..+|++..+... .+...|...... +.
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHH
Confidence 9999999999999999999999984 343 2 5799999999999999999999999998532 123333322222 34
Q ss_pred hcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCc--HHHHHHHHHHHH
Q 044770 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKAN-YTKY--TFVYNTLIKAYV 427 (464)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~ 427 (464)
..|+.++|..+|+.+++.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+.-..
T Consensus 403 ~~~~~~~A~~~~e~al~~~--------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HcCChhHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 6899999999999996431 2356788899999999999999999999999864 2332 348988899888
Q ss_pred HcCCC--hhHHHHHHHhC
Q 044770 428 KAKIN--DPNLLRRMILG 443 (464)
Q Consensus 428 ~~g~~--a~~~~~~m~~~ 443 (464)
..|+. +..++.++.+.
T Consensus 475 ~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 475 NIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HSSCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 89974 77788887764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=163.97 Aligned_cols=285 Identities=8% Similarity=-0.045 Sum_probs=222.2
Q ss_pred cChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHH
Q 044770 76 HGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILR 154 (464)
Q Consensus 76 g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 154 (464)
+....+...+...... ..+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 123 (365)
T 4eqf_A 45 VTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQ 123 (365)
T ss_dssp --------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3334444444444443 2345678889999999999999999999999864 4578889999999999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-----------HhHHHHHHHHHHhcChhhHHHHHH
Q 044770 155 QMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN-----------EVSYCILATAHAVARLYTVAETYV 223 (464)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----------~~~~~~li~~~~~~~~~~~a~~~~ 223 (464)
++.+.. +.+..++..+...|...|++++|...|+++.+.. |+ ...+..+...+...|++++|...+
T Consensus 124 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 124 RCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 998864 5567889999999999999999999999988652 32 122334577888999999999999
Q ss_pred HHHHhccCC-CChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccC
Q 044770 224 EALEKSMTG-NNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK 302 (464)
Q Consensus 224 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 302 (464)
+++.+.... ++..++..+...+...|++++|...++......+.+..++..+...|...|++++|...|+++.+.. +.
T Consensus 201 ~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 279 (365)
T 4eqf_A 201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PG 279 (365)
T ss_dssp HHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 999886432 1678899999999999999999999999988777778889999999999999999999999998843 34
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---c--------cHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCK---P--------NAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 303 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~---p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
+..+|..+..+|...|++++|...|+++.+.... | +...|..+..++...|+.+.+..+....
T Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 5788999999999999999999999998863211 0 2567888999999999999988877664
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-19 Score=162.81 Aligned_cols=291 Identities=10% Similarity=-0.007 Sum_probs=230.6
Q ss_pred HHhhcchHHHHH-HHHHHHHcCCCCC--CchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcH
Q 044770 36 LRKLQLNKRALE-VMEWVIRERPYRP--KELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVI 111 (464)
Q Consensus 36 ~~~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~ 111 (464)
+.-.|++++|++ .++...+..+-.| +...+..+...+...|++++|...|+++... +.+..+|..+...+...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 334578888888 8776654322222 3566888999999999999999999998776 44678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHH---------------HHHHHH
Q 044770 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHI---------------LMKIEA 176 (464)
Q Consensus 112 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~ 176 (464)
++|+..|+++.+.+ +.+..++..+...+...|++++|...++++.+.. +.+...+.. .+..+.
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 99999999999875 4578889999999999999999999999998864 223333321 233344
Q ss_pred ccCChhHHHHHHHHHHhCCCC-CcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHH
Q 044770 177 NDHNIEGLMKVYSDMKRSEVE-PNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE 255 (464)
Q Consensus 177 ~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (464)
..|++++|...|+++.+.... ++..++..+...+.+.|++++|...++++... .+.+..++..+..++...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999876322 14788999999999999999999999999876 3446788999999999999999999
Q ss_pred HHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccC----------ChhhHHHHHHHHHhcCChhHHHH
Q 044770 256 RIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK----------ATEQYNSVISVYCKNGFIDKASG 325 (464)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~ 325 (464)
..++.+....+.+...+..+...|.+.|++++|...|+.+.+..... ...+|..+..+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 99999988777778889999999999999999999999988743221 15789999999999999999998
Q ss_pred HHHH
Q 044770 326 LLKE 329 (464)
Q Consensus 326 ~~~~ 329 (464)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=161.85 Aligned_cols=348 Identities=9% Similarity=0.006 Sum_probs=169.2
Q ss_pred CCCcchhhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhh
Q 044770 7 GEPVGSAFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFC 86 (464)
Q Consensus 7 ~~~~~~~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 86 (464)
-+++.+.++++ +++..+..+..++.+.|++++|++.|... +|..+|..++..+...|++++|..+++
T Consensus 19 ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 19 LDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34444444444 44568999999999999999999999642 467789999999999999999999888
Q ss_pred hcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChh
Q 044770 87 CIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVS 166 (464)
Q Consensus 87 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (464)
...+..+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ .
T Consensus 86 ~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 86 MARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp -----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------T
T ss_pred HHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 887765667889999999999999999988884 367789999999999999999999999977 4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (464)
.|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQ 218 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHH
Confidence 7999999999999999999999988 2789999999999999999999655443 2233444557889999
Q ss_pred hhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhcc--CChHHHHHHHHHHHhccccC------ChhhHHHHHHHHHhcC
Q 044770 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI--AQVSRAEELWLEMQSVKQLK------ATEQYNSVISVYCKNG 318 (464)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~ 318 (464)
+.|.++++..+++......+.....|+-+..+|++- ++..+..+.|.. ..+++| +...|..++..|...+
T Consensus 219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~ 296 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYE 296 (449)
T ss_dssp HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999998887777778888887777763 445555555542 112333 4668999999999999
Q ss_pred ChhHHHHHHHHHHhCC-----------CCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHH
Q 044770 319 FIDKASGLLKEMSMNG-----------CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSI 387 (464)
Q Consensus 319 ~~~~a~~~~~~m~~~g-----------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 387 (464)
+++.|....-+-...- -..+...|...+.-|. +....++.-+-.. ....+.+ +..
T Consensus 297 e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~-------l~~~ld~-----~r~ 362 (449)
T 1b89_A 297 EYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMV-------LSPRLDH-----TRA 362 (449)
T ss_dssp CHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHH-------HGGGCCH-----HHH
T ss_pred hHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHH-------HHhccCc-----HHH
Confidence 9998876433211100 1123445555555554 2222222222222 1122333 255
Q ss_pred HHHHHhcCChhhHHHHHHHHHHc
Q 044770 388 IEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 388 i~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
+..+.+.|++.-+...++.....
T Consensus 363 v~~~~~~~~l~l~~~yl~~v~~~ 385 (449)
T 1b89_A 363 VNYFSKVKQLPLVKPYLRSVQNH 385 (449)
T ss_dssp HHHHHHTTCTTTTHHHHHHHHTT
T ss_pred HHHHHHcCCcHHHHHHHHHHHHh
Confidence 67777888888888888777764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-16 Score=150.17 Aligned_cols=355 Identities=10% Similarity=-0.018 Sum_probs=287.3
Q ss_pred ccChhchHHHHHHHHh----hcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHh----hcChHHHHHHhhhcCCCCCc
Q 044770 23 PVHRGEIFHSINRLRK----LQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIK----NHGISQGEKLFCCIPKDYQN 94 (464)
Q Consensus 23 ~~~~~~~~~~l~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 94 (464)
+.++.....+...+.. .+++++|.+.|+...+. .+...+..|...|.. .++.++|...|++.... .+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~ 110 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-GL 110 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TC
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CC
Confidence 3456777777777877 89999999999999873 356788888888888 89999999999987664 36
Q ss_pred hhHHHHHHHHHHh----hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcC----CCCcccHHHHHHHHHhCCCCCChh
Q 044770 95 ELLYNNLVIACLD----KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS----PGRRKTIPNILRQMKADKVAPHVS 166 (464)
Q Consensus 95 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 166 (464)
...+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 6777788888888 789999999999998876 56677777777765 788999999999998864 677
Q ss_pred hHHHHHHHHHc----cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHh----cChhhHHHHHHHHHHhccCCCChhhH
Q 044770 167 TFHILMKIEAN----DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV----ARLYTVAETYVEALEKSMTGNNWSTL 238 (464)
Q Consensus 167 ~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (464)
.+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.+ +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 78888888887 899999999999988764 55677777777776 789999999999988764 45566
Q ss_pred HHHHHHHHh----hcChhhHHHHHHHhccCCCCchhhHHHHHHHhhcc-----CChHHHHHHHHHHHhccccCChhhHHH
Q 044770 239 DVLIILYGY----LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI-----AQVSRAEELWLEMQSVKQLKATEQYNS 309 (464)
Q Consensus 239 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~ 309 (464)
..+...+.. .++.++|...++...+... ...+..+...|... +++++|...|++..+.+ +...+..
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~--~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQGN--SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 677777777 7899999999998876543 34577778888776 89999999999998864 4457777
Q ss_pred HHHHHHhcC---ChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHhHHHHhhhhhcCCCCcHH
Q 044770 310 VISVYCKNG---FIDKASGLLKEMSMNGCKPNAITYRHLALGCFK----SNLVEEGFKALELGMKLITTKKVRSSTPWLE 382 (464)
Q Consensus 310 li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~ 382 (464)
+...|...| ++++|+.+|++..+.| +...+..+...|.. .+++++|...|+.+. ..+ +..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~-------~~~---~~~ 400 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA-------EQG---LSA 400 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-------HTT---CHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-------hCC---CHH
Confidence 888887766 7899999999999864 56777788888887 789999999999984 333 456
Q ss_pred HHHHHHHHHHh----cCChhhHHHHHHHHHHcCC
Q 044770 383 TTLSIIEIFAE----KGDVGNAENLFEELKKANY 412 (464)
Q Consensus 383 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~ 412 (464)
.+..|...|.+ .++.++|...|++..+.+.
T Consensus 401 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 401 AQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 67788888888 8999999999999998774
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-20 Score=176.66 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcH
Q 044770 305 EQYNSVISVYCKNGFIDKASGLLKEMSM---NGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381 (464)
Q Consensus 305 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~ 381 (464)
.+||++|++||+.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++| ...|+.||.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM-------~~~G~~PDv 200 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV-------KDAGLTPDL 200 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHH-------HHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH-------HHcCCCCcH
Confidence 3566666666666666666666655542 355666666666666666666666666666666 556666666
Q ss_pred HHHHHHHHHHHhcCCh-hhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc
Q 044770 382 ETTLSIIEIFAEKGDV-GNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 429 (464)
.|||+||+++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 6666666666666653 45566666666666666666666555544443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-18 Score=156.09 Aligned_cols=274 Identities=7% Similarity=-0.068 Sum_probs=219.0
Q ss_pred chhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 044770 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208 (464)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 208 (464)
+...+..+...+.+.|++++|...|+++.+.. +.+..+|..+...+...|++++|...|++..+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888999999999999999999999865 6678899999999999999999999999998764 335788999999
Q ss_pred HHHhcChhhHHHHHHHHHHhccCCC---------ChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCC--chhhHHHHHH
Q 044770 209 AHAVARLYTVAETYVEALEKSMTGN---------NWSTLDVLIILYGYLAKGKDLERIWATVQELPNV--RSKSYVLAIE 277 (464)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 277 (464)
++...|++++|...++++.+..... ....+..+...+...|++++|...++.+....+. +..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999997753110 1223344578899999999999999999885555 7778999999
Q ss_pred HhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHH
Q 044770 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEE 357 (464)
Q Consensus 278 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 357 (464)
.|...|++++|...|++..+. .+.+..+|..+..+|...|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999884 34468899999999999999999999999999853 2247889999999999999999
Q ss_pred HHHHHHHhHHHHhhhhhcCC----CCcHHHHHHHHHHHHhcCChhhHHHHHHH
Q 044770 358 GFKALELGMKLITTKKVRSS----TPWLETTLSIIEIFAEKGDVGNAENLFEE 406 (464)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (464)
|...++.++++.+....... ..+...|..+..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999876543111111 11356788999999999999988887654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-15 Score=143.34 Aligned_cols=364 Identities=10% Similarity=-0.003 Sum_probs=294.4
Q ss_pred HHHHHHHHHHcCCCCCCchhHHHHHHHHHh----hcChHHHHHHhhhcCCCCCchhHHHHHHHHHHh----hCcHHHHHH
Q 044770 45 ALEVMEWVIRERPYRPKELDYSYLLEFTIK----NHGISQGEKLFCCIPKDYQNELLYNNLVIACLD----KGVIKLSLE 116 (464)
Q Consensus 45 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~ 116 (464)
+.+.++...+ ..+...+..+...|.. .+++++|...|++..+. .+...+..|...|.. .+++++|+.
T Consensus 26 ~~~~~~~~a~----~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 26 NLEQLKQKAE----SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 3455555544 2366777888888887 89999999999987664 467788889999998 899999999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHhcC----CCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChhHHHHHH
Q 044770 117 YMKKMRVLGHSISYLVFNRLIILNSS----PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN----DHNIEGLMKVY 188 (464)
Q Consensus 117 ~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 188 (464)
.|++..+.| +...+..|...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999998876 56677778777777 789999999999998865 56677778888887 78999999999
Q ss_pred HHHHhCCCCCcHhHHHHHHHHHHh----cChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHh----hcChhhHHHHHHH
Q 044770 189 SDMKRSEVEPNEVSYCILATAHAV----ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY----LAKGKDLERIWAT 260 (464)
Q Consensus 189 ~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 260 (464)
++..+.| +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .++.++|..+++.
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9998864 67788888888887 899999999999998764 45677778777776 7899999999998
Q ss_pred hccCCCCchhhHHHHHHHhhc----cCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhc-----CChhHHHHHHHHHH
Q 044770 261 VQELPNVRSKSYVLAIEAFGR----IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKN-----GFIDKASGLLKEMS 331 (464)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~ 331 (464)
...... ...+..+...|.. .+++++|...|++..+.+ +...+..+...|... +++++|+..|++..
T Consensus 249 a~~~~~--~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 249 SAEQGN--SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HHTTTC--HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHHCCC--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 877543 3456677777776 899999999999998764 455777888888887 89999999999999
Q ss_pred hCCCCccHHHHHHHHHHHHhcC---ChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHh----cCChhhHHHHH
Q 044770 332 MNGCKPNAITYRHLALGCFKSN---LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE----KGDVGNAENLF 404 (464)
Q Consensus 332 ~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~ 404 (464)
+.| +...+..+...+...| +.++|...|+.+. .. .+...+..|...|.. .+++++|...|
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~-------~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA-------AK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH-------HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH-------HC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 875 4456667777776656 8899999999984 33 356677888999988 89999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHH----cCCC--hhHHHHHHHhCCCC
Q 044770 405 EELKKANYTKYTFVYNTLIKAYVK----AKIN--DPNLLRRMILGGAR 446 (464)
Q Consensus 405 ~~m~~~~~~p~~~~~~~li~~~~~----~g~~--a~~~~~~m~~~~~~ 446 (464)
++..+.| +...+..+-..|.+ .++. |..+|++..+.|..
T Consensus 391 ~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 391 RKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 9999875 46678888888887 5553 89999999887744
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-19 Score=174.76 Aligned_cols=121 Identities=12% Similarity=0.087 Sum_probs=108.9
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 044770 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK 414 (464)
Q Consensus 335 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 414 (464)
..--..||+++|.+|++.|++++|..+|+.|.+. ...|+.||..|||+||++||+.|++++|.++|++|.+.|+.|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m----~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P 198 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ----RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS----HHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----hhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 3445679999999999999999999999988422 346899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCC---hhHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044770 415 YTFVYNTLIKAYVKAKIN---DPNLLRRMILGGARPDAETYSLLKLAE 459 (464)
Q Consensus 415 ~~~~~~~li~~~~~~g~~---a~~~~~~m~~~~~~p~~~t~~~L~~~~ 459 (464)
|.+|||++|.++++.|+. |.++|++|.+.|+.||.+||++++..+
T Consensus 199 DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 999999999999999973 789999999999999999999655443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-17 Score=148.76 Aligned_cols=269 Identities=9% Similarity=-0.034 Sum_probs=187.5
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (464)
..|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345555556666666666666666666543 2345556666666666666666666666665543 34555666666666
Q ss_pred HccCChhHHHHHHHHHHhCCCCCcHhHHHHH--------------HH-HHHhcChhhHHHHHHHHHHhccCCCChhhHHH
Q 044770 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL--------------AT-AHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240 (464)
Q Consensus 176 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (464)
...|++++|...++++.+.... +...+..+ .. .+...|++++|...++++.+.. +.+..++..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 6666666666666666654211 12222222 22 2667788888888888887653 346677778
Q ss_pred HHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCCh
Q 044770 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320 (464)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 320 (464)
+...+...|++++|...++.+....+.+...+..+...+...|++++|...|+++.+.. +.+...|..+...+...|++
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 88888888888888888888777666667778888999999999999999999988743 34677888999999999999
Q ss_pred hHHHHHHHHHHhCCCCc-----------cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHH
Q 044770 321 DKASGLLKEMSMNGCKP-----------NAITYRHLALGCFKSNLVEEGFKALELGMKLI 369 (464)
Q Consensus 321 ~~a~~~~~~m~~~g~~p-----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 369 (464)
++|...++++.+..... +...+..+..++...|++++|..+++.+++..
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 99999999988743221 46788888899999999999999998775543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.4e-19 Score=156.13 Aligned_cols=239 Identities=12% Similarity=0.078 Sum_probs=60.8
Q ss_pred hhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHH
Q 044770 38 KLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEY 117 (464)
Q Consensus 38 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 117 (464)
+.|++++|.++++.+. ++.+|..++.++.+.|++++|.+.|.+. ++...|..++.++...|++++|+..
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3444555555555541 1125555555555555555555555432 2444555555555555555555554
Q ss_pred HHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 044770 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE 197 (464)
Q Consensus 118 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 197 (464)
++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 4444332 2334455555555555555555554442 244445555555555555555555555544
Q ss_pred CcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHH
Q 044770 198 PNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277 (464)
Q Consensus 198 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 277 (464)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.....++.
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~~ad~l~~lv~ 215 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELIN 215 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----TCHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----hCHhhHHHHHH
Confidence 24555555555555555555555554 134555555555555555555533222211 11122333445
Q ss_pred HhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHh
Q 044770 278 AFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316 (464)
Q Consensus 278 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 316 (464)
.|.+.|++++|..+++...... +.....|+-+...|++
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 5555555555555555544322 2233344444444443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.8e-18 Score=150.60 Aligned_cols=280 Identities=6% Similarity=-0.067 Sum_probs=179.5
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVI 103 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~ 103 (464)
+...+......+...|++++|+.+|+.+.+.. +.+...+..+...+...|++++|...|+++... +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 55566777888888888888888888887743 345667777788888888888888888877665 335677778888
Q ss_pred HHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHH-HH-HHHccCCh
Q 044770 104 ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHIL-MK-IEANDHNI 181 (464)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~ 181 (464)
.+...|++++|++.++++.+.. +.+...+..+... .|+......+ .. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 8888888888888888887753 2222333222100 0111111111 11 24455566
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHh
Q 044770 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261 (464)
Q Consensus 182 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (464)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|...++..
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-RPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666655442 224555566666666666666666666666554 2234555666666666666666666666666
Q ss_pred ccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccC-----------ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 044770 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-----------ATEQYNSVISVYCKNGFIDKASGLLKEM 330 (464)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m 330 (464)
....+.+...+..+...|...|++++|.+.|++..+..... +...|..+..++...|++++|..++++.
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 233 LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55445555667778888888888888888888877643221 4667888888999999999998887654
Q ss_pred H
Q 044770 331 S 331 (464)
Q Consensus 331 ~ 331 (464)
.
T Consensus 313 l 313 (327)
T 3cv0_A 313 V 313 (327)
T ss_dssp S
T ss_pred H
Confidence 3
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-15 Score=145.36 Aligned_cols=379 Identities=9% Similarity=0.026 Sum_probs=270.7
Q ss_pred HHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCC
Q 044770 49 MEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHS 127 (464)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 127 (464)
++..++.. +-+...|..++.. ...|++++|..+|+++....| +...|..++..+.+.|++++|..+|++.....
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 44444433 3467788888884 788999999999999988755 67889999999999999999999999999863
Q ss_pred CchhhHHHHHHHh-cCCCCcccHHH----HHHHHHh-CCCCC-ChhhHHHHHHHHHc---------cCChhHHHHHHHHH
Q 044770 128 ISYLVFNRLIILN-SSPGRRKTIPN----ILRQMKA-DKVAP-HVSTFHILMKIEAN---------DHNIEGLMKVYSDM 191 (464)
Q Consensus 128 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~-~~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m 191 (464)
|+...|..++... ...|+.+.|.+ +|+...+ .|..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777787777533 35677887765 7776654 35444 45677777776654 78999999999999
Q ss_pred HhCCCCCcHhHHHHHHHHH-------------HhcChhhHHHHHHHHHH------hcc---CCCCh--------hhHHHH
Q 044770 192 KRSEVEPNEVSYCILATAH-------------AVARLYTVAETYVEALE------KSM---TGNNW--------STLDVL 241 (464)
Q Consensus 192 ~~~~~~p~~~~~~~li~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~~--------~~~~~l 241 (464)
.+....+....|....... .+.+++..|..+++... +.. ++|+. ..|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8731111123443322211 12456777777776632 111 23331 234443
Q ss_pred HHHHHhh----cCh----hhHHHHHHHhccCCCCchhhHHHHHHHhhc-------cCChH-------HHHHHHHHHHhcc
Q 044770 242 IILYGYL----AKG----KDLERIWATVQELPNVRSKSYVLAIEAFGR-------IAQVS-------RAEELWLEMQSVK 299 (464)
Q Consensus 242 ~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~ 299 (464)
+...... ++. ..+..+++......+.+...|..++..+.+ .|+++ +|..+|++..+.-
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence 3322221 122 366778888877666777888888888875 79987 8999999998732
Q ss_pred ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-H-HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCC
Q 044770 300 QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN-A-ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSS 377 (464)
Q Consensus 300 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 377 (464)
.+.+...|..++..+.+.|++++|..+|+++.+ +.|+ . ..|...+..+.+.|++++|..+|+.+++ .
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---------~ 385 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---------D 385 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------C
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---------c
Confidence 344678899999999999999999999999998 4554 2 4788888888899999999999999952 2
Q ss_pred CC-cHHHHHHHHHH-HHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHHHHHHhCC
Q 044770 378 TP-WLETTLSIIEI-FAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLLRRMILGG 444 (464)
Q Consensus 378 ~p-~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~~~m~~~~ 444 (464)
.| +...|...+.. +...|+.++|..+|++..+.. +.+...|..++..+.+.|+. |..+|++....+
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 22 22222222222 336899999999999988754 23567999999999999974 899999998864
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-16 Score=145.30 Aligned_cols=379 Identities=8% Similarity=-0.157 Sum_probs=196.5
Q ss_pred hhchHHHHHHHHhhcchHHHHHHHHHHHHc----CC---CCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-------
Q 044770 26 RGEIFHSINRLRKLQLNKRALEVMEWVIRE----RP---YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD------- 91 (464)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~----~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------- 91 (464)
...++.+...+...|++++|++.|+...+. .+ .+....+|+.+..+|...|++++|...+++....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445666677777778888888887776541 11 1123356777777888888888887777654321
Q ss_pred -C-CchhHHHHHHHHHHhh--CcHHHHHHHHHHHHHcCCCCchhhHHHHHHH---hcCCCCcccHHHHHHHHHhCCCCCC
Q 044770 92 -Y-QNELLYNNLVIACLDK--GVIKLSLEYMKKMRVLGHSISYLVFNRLIIL---NSSPGRRKTIPNILRQMKADKVAPH 164 (464)
Q Consensus 92 -~-~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (464)
. ....++.....++... +++++|+..|++..+.. +-+...+..+..+ +...++.++|++.+++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 1 1234555555444443 46788888888777753 2233444444333 334566777777777776643 344
Q ss_pred hhhHHHHHHHHHc----cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHH
Q 044770 165 VSTFHILMKIEAN----DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240 (464)
Q Consensus 165 ~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (464)
...+..+...+.. .+++++|.+++++..... +.+...+..+...+...|++++|...+++..+. .+.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY-IPNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-CCChHHHHHH
Confidence 4555544444433 456677888877766543 335566777777788888888888888877665 2334455555
Q ss_pred HHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCCh
Q 044770 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFI 320 (464)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 320 (464)
+..+|...+...... . ...........+..+.|...|+...+.. +.+...+..+...|...|++
T Consensus 287 lg~~y~~~~~~~~~~---------~------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNL---------R------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhhH---------H------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccH
Confidence 554443221100000 0 0000000111223456666666666532 23455666677777777777
Q ss_pred hHHHHHHHHHHhCCCCccHH--HHHHHHH-HHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCCh
Q 044770 321 DKASGLLKEMSMNGCKPNAI--TYRHLAL-GCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397 (464)
Q Consensus 321 ~~a~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 397 (464)
++|...|++..+....|... .+..+.. .....|+.++|+..++++++ +.|+..... +..
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---------i~~~~~~~~---------~~~ 412 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---------INQKSREKE---------KMK 412 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---------SCCCCHHHH---------HHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------cCcccHHHH---------HHH
Confidence 77777777776643332221 1222221 23355677777777776642 223221111 112
Q ss_pred hhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHHHHHHhC
Q 044770 398 GNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLLRRMILG 443 (464)
Q Consensus 398 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~~~m~~~ 443 (464)
..+.++++...+.. +.+..+|+.+-..|...|+. |++.|++..+.
T Consensus 413 ~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 413 DKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23344444444432 22344666666666666642 66666666554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-16 Score=138.97 Aligned_cols=246 Identities=11% Similarity=-0.018 Sum_probs=113.5
Q ss_pred hhcChHHHHHHhhhcCCCCCc--hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHH
Q 044770 74 KNHGISQGEKLFCCIPKDYQN--ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPN 151 (464)
Q Consensus 74 ~~g~~~~a~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 151 (464)
..|++..|+..++......|+ ......+.++|...|+++.|+..++. .-+|+..++..+...+...++.++|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 344444444444443332222 12233334444444444444443322 123334444444444444444445555
Q ss_pred HHHHHHhCCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhcc
Q 044770 152 ILRQMKADKVAP-HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSM 230 (464)
Q Consensus 152 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 230 (464)
.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|...++++.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 554444433222 223333333444455555555554443 2334444444445555555555555555544432
Q ss_pred CCCChhhH---HHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhH
Q 044770 231 TGNNWSTL---DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQY 307 (464)
Q Consensus 231 ~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 307 (464)
|+.... ...+..+...|++++|..+++.+....+.+...++.+..++.+.|++++|...|++..+. .+-+..++
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~p~~~~~l 237 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-DSGHPETL 237 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHH
Confidence 221100 011122222344555555555544444444445566666666666666666666666653 22355566
Q ss_pred HHHHHHHHhcCChhH-HHHHHHHHHh
Q 044770 308 NSVISVYCKNGFIDK-ASGLLKEMSM 332 (464)
Q Consensus 308 ~~li~~~~~~~~~~~-a~~~~~~m~~ 332 (464)
..++..+...|+.++ +.++++++.+
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 666666666666654 4556666665
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.5e-17 Score=140.23 Aligned_cols=274 Identities=5% Similarity=-0.044 Sum_probs=217.4
Q ss_pred HHHHHhhcchHHHHHHHHHHHHcCCCCCCc--hhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCc
Q 044770 33 INRLRKLQLNKRALEVMEWVIRERPYRPKE--LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGV 110 (464)
Q Consensus 33 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 110 (464)
++.....|+++.|+..++.+.. ..|+. .....+...|...|+++.|...++.. ..|+..++..+...+...++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--CChhHHHHHHHHHHHcCCCc
Confidence 4566678999999998876533 23443 34566788999999999999988764 34678889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC-chhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 044770 111 IKLSLEYMKKMRVLGHSI-SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189 (464)
Q Consensus 111 ~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (464)
.++|++.++++...+..| +...+..+...+...|++++|.+.+++ +.+...+..++..+.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999876545 455667777889999999999999987 5678889999999999999999999999
Q ss_pred HHHhCCCCCcHhHH---HHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCC
Q 044770 190 DMKRSEVEPNEVSY---CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPN 266 (464)
Q Consensus 190 ~m~~~~~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 266 (464)
++.+. .|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...++......+
T Consensus 155 ~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99876 3554322 12233344569999999999999887 567888999999999999999999999999999888
Q ss_pred CchhhHHHHHHHhhccCChHH-HHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHH
Q 044770 267 VRSKSYVLAIEAFGRIAQVSR-AEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325 (464)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 325 (464)
.+..++..++..+...|+.++ +.++++++.+.. |+.. .+.+...+.+.++++..
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~---~~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHP---FIKEYRAKENDFDRLVL 286 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCH---HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCCh---HHHHHHHHHHHHHHHHH
Confidence 888889999999999999976 678999988743 4321 23333444455555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-15 Score=140.37 Aligned_cols=333 Identities=11% Similarity=-0.070 Sum_probs=185.6
Q ss_pred CCchhHHHHHHHHHhhcChHHHHHHhhhcCCC----------CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcC----
Q 044770 60 PKELDYSYLLEFTIKNHGISQGEKLFCCIPKD----------YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLG---- 125 (464)
Q Consensus 60 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---- 125 (464)
.....|+.|...+...|+.++|++.|++..+. .....+|+.+...|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34556777777888888888888777664221 1234567777778888888888887777665421
Q ss_pred --CCC-chhhHHHHHHHhc--CCCCcccHHHHHHHHHhCCCCCChhhHHHHHHH---HHccCChhHHHHHHHHHHhCCCC
Q 044770 126 --HSI-SYLVFNRLIILNS--SPGRRKTIPNILRQMKADKVAPHVSTFHILMKI---EANDHNIEGLMKVYSDMKRSEVE 197 (464)
Q Consensus 126 --~~~-~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~ 197 (464)
..+ ...++.....++. ..+++++|...|++..+.. +-+...+..+..+ +...++.++|++.|++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 011 1234444333332 3345667777777766542 2233333333333 233455666666666655442 2
Q ss_pred CcHhHHHHHHHHHHh----cChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHH
Q 044770 198 PNEVSYCILATAHAV----ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273 (464)
Q Consensus 198 p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (464)
.+..++..+...+.. .+++++|...+++.... .+.+..++..+...+...|+++.|...++...+..+.+..++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 233444444333332 34556666666666554 2334455566666666666666666666666554444554555
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN 353 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 353 (464)
.+...|...+....+. ............+..+.|...++...+.. +.+..++..+...+...|
T Consensus 286 ~lg~~y~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNL----------------RENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhH----------------HHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 5544442211100000 00000111112234678999999888743 224566778888999999
Q ss_pred ChHHHHHHHHHhHHHHhhhhhcCCCCcH--HHHHHHHH-HHHhcCChhhHHHHHHHHHHcCCCCcHHHHHH
Q 044770 354 LVEEGFKALELGMKLITTKKVRSSTPWL--ETTLSIIE-IFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421 (464)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 421 (464)
++++|...|+++++ ....|.. ..+..+.. .+...|+.++|...|++..+.. |+...+..
T Consensus 349 ~~~~A~~~~~kaL~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~ 410 (472)
T 4g1t_A 349 QYEEAEYYFQKEFS-------KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK 410 (472)
T ss_dssp CHHHHHHHHHHHHH-------SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH
T ss_pred cHHHHHHHHHHHHh-------cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH
Confidence 99999999999942 3323322 12333333 2357899999999999988853 66554433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-14 Score=144.36 Aligned_cols=347 Identities=11% Similarity=0.114 Sum_probs=263.3
Q ss_pred ccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCC-CCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHH
Q 044770 23 PVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERP-YRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNL 101 (464)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 101 (464)
..++......+++|...|.+.+|+++++.+.-... +.-+...-+.++.+..+. +..+..++..+.... + ...+
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--d---~~eI 1055 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--D---APDI 1055 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc--c---HHHH
Confidence 35677788999999999999999999999985221 112234445566666666 556666666665531 1 3447
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 044770 102 VIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNI 181 (464)
Q Consensus 102 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (464)
...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 7788889999999999988531 2222333333 667889999988855 3466788999999999999
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHh
Q 044770 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261 (464)
Q Consensus 182 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (464)
++|.+.|.+. -|...|..++.+|.+.|++++|.++|....+.. +++...+.++.+|++.++++....+.
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 9999999664 377888899999999999999999999887764 33334445888999998888655443
Q ss_pred ccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHH
Q 044770 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341 (464)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 341 (464)
. .++...|..+...|...|++++|..+|.... .|..+..+|++.|++++|.+.+++.. +..+
T Consensus 1191 -~--~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---------ny~rLA~tLvkLge~q~AIEaarKA~------n~~a 1252 (1630)
T 1xi4_A 1191 -N--GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRT 1252 (1630)
T ss_pred -h--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh---------HHHHHHHHHHHhCCHHHHHHHHHHhC------CHHH
Confidence 2 2233457789999999999999999999852 69999999999999999999999763 5688
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHH
Q 044770 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421 (464)
Q Consensus 342 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 421 (464)
|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++...... +-....|+-
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~------------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftE 1319 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLH------------IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 1319 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHh------------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHH
Confidence 98888999999998888765433 34455666789999999999999999998777543 233448888
Q ss_pred HHHHHHHcCC
Q 044770 422 LIKAYVKAKI 431 (464)
Q Consensus 422 li~~~~~~g~ 431 (464)
+...|++..-
T Consensus 1320 LaiLyaKy~p 1329 (1630)
T 1xi4_A 1320 LAILYSKFKP 1329 (1630)
T ss_pred HHHHHHhCCH
Confidence 8888888763
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-13 Score=137.14 Aligned_cols=341 Identities=12% Similarity=0.089 Sum_probs=228.8
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCc
Q 044770 31 HSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGV 110 (464)
Q Consensus 31 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 110 (464)
.+...+...|.+++|..+|+.... .....+.+ +-..+++++|.++.++.. +..+|..+..++...|+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~------~~~A~~VL---ie~i~nldrAiE~Aervn----~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV------NTSAVQVL---IEHIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC------HHHHHHHH---HHHHhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCC
Confidence 345566677777777777776421 11112222 226677788877777663 46677788888888888
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 044770 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190 (464)
Q Consensus 111 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (464)
+++|++.|.+. -|...|..++..+.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 88888888553 366677778888888888888888887766643 33333445777788887777533332
Q ss_pred HHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchh
Q 044770 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270 (464)
Q Consensus 191 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 270 (464)
+ .++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.++.. .+..
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~ 1251 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTR 1251 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHH
Confidence 1 345566667777888888888888888774 36777888888888888888888766 3345
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 350 (464)
+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++...... +-....|.-+...++
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHH
Confidence 67777788888888888877665433 355567788888999999999999997776533 223345555555554
Q ss_pred h--cCChHHHHHHHHHhHHHHhhhhhcCCCC------cHHHHHHHHHHHHhcCChhhHHHH-------------HHHHHH
Q 044770 351 K--SNLVEEGFKALELGMKLITTKKVRSSTP------WLETTLSIIEIFAEKGDVGNAENL-------------FEELKK 409 (464)
Q Consensus 351 ~--~~~~~~a~~~~~~~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~ 409 (464)
+ -++..++.+.|..- .+++| +...|..++-.|.+.|+++.|... |++...
T Consensus 1326 Ky~peklmEhlk~f~~r---------ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~ 1396 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSR---------VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT 1396 (1630)
T ss_pred hCCHHHHHHHHHHHHHh---------cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc
Confidence 4 34555555555543 33333 456788999999999999998832 222221
Q ss_pred cCCCCcHHHHHHHHHHHHHcC
Q 044770 410 ANYTKYTFVYNTLIKAYVKAK 430 (464)
Q Consensus 410 ~~~~p~~~~~~~li~~~~~~g 430 (464)
. ..|+..|...+.-|...+
T Consensus 1397 k--v~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1397 K--VANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred c--cccHHHHHHHHHHHHhhC
Confidence 1 245667777777777655
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-15 Score=127.94 Aligned_cols=225 Identities=8% Similarity=-0.055 Sum_probs=152.5
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCC--CCC----hhhH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV--APH----VSTF 168 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 168 (464)
...|..+...+...|++++|+..|++..+.. .+..++..+...+...|++++|...++...+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777778888888888888888888776 6777788888888888888888888887765321 111 4667
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhh
Q 044770 169 HILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL 248 (464)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (464)
..+...+...|++++|...|++..+. .|+. ..+.+.|++++|...++++... .+.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV-NPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc-CcchHHHHHHHHHHHHHh
Confidence 77778888888888888888887764 3442 3455667777777777777654 222345556666666666
Q ss_pred cChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHH
Q 044770 249 AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328 (464)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 328 (464)
|++++|...++......+.+...+..+...|...|++++|...|+...+.. +.+...|..+..++...|++++|...++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666666666666666545555566666666666777777777776666532 2345566666666666777777776666
Q ss_pred HHHh
Q 044770 329 EMSM 332 (464)
Q Consensus 329 ~m~~ 332 (464)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=8e-15 Score=125.77 Aligned_cols=228 Identities=7% Similarity=-0.068 Sum_probs=196.9
Q ss_pred hhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCc----HhHH
Q 044770 130 YLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEV--EPN----EVSY 203 (464)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~~~ 203 (464)
...+..+...+...|++++|...|++..+.. .+...+..+...+...|++++|...|++..+... .|+ ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4577888889999999999999999999876 7888999999999999999999999999876421 112 5788
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccC
Q 044770 204 CILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIA 283 (464)
Q Consensus 204 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 283 (464)
..+..++...|++++|...+++..... |+ ...+...|+++++...++.+....+.....+..+...+...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhc
Confidence 899999999999999999999998853 33 245677889999999999998887778888999999999999
Q ss_pred ChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 044770 284 QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALE 363 (464)
Q Consensus 284 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 363 (464)
++++|...|++..+.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999998843 4467889999999999999999999999998853 2357888899999999999999999999
Q ss_pred HhHHHHh
Q 044770 364 LGMKLIT 370 (464)
Q Consensus 364 ~~~~~~~ 370 (464)
.+++...
T Consensus 232 ~a~~~~~ 238 (258)
T 3uq3_A 232 AARTKDA 238 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHhCh
Confidence 9976543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.5e-14 Score=129.35 Aligned_cols=349 Identities=11% Similarity=0.014 Sum_probs=233.5
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcCh---HHHHHHhhhcCCCCCchhHHHHHHHHHH
Q 044770 30 FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGI---SQGEKLFCCIPKDYQNELLYNNLVIACL 106 (464)
Q Consensus 30 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~li~~~~ 106 (464)
..+...+.+.|++++|++.|+...+. | +...+..+...|...|+. ++|...|++..+. +...+..+...+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHH
Confidence 34667778899999999999999874 3 455666777777778888 8999999998874 6667777777555
Q ss_pred hhC-----cHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCc---ccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 044770 107 DKG-----VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR---KTIPNILRQMKADKVAPHVSTFHILMKIEAND 178 (464)
Q Consensus 107 ~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (464)
..+ ++++|+..|++..+.|. ...+..|...|...+.. ..+.+.+......| +...+..|...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 88999999999998763 23666677777665544 34555555555444 355666778888888
Q ss_pred CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcC---hhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhh----cCh
Q 044770 179 HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR---LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL----AKG 251 (464)
Q Consensus 179 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~ 251 (464)
+.++++......+.+.-...+...+..+...|.+.| +.++|+..|++..+.|. ++...+..+...|... ++.
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCH
Confidence 866665555333332212234448888888898999 99999999999988764 3444445666677554 689
Q ss_pred hhHHHHHHHhccCCCCchhhHHHHHHH-h--hccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcC-----ChhHH
Q 044770 252 KDLERIWATVQELPNVRSKSYVLAIEA-F--GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG-----FIDKA 323 (464)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a 323 (464)
++|..+++... +.+...+..+... | ...+++++|...|++..+.| +...+..+...|. .| ++++|
T Consensus 234 ~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 234 KTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 99999999987 4455567777776 4 56899999999999999866 5667888888777 55 89999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHh----cC
Q 044770 324 SGLLKEMSMNGCKPNAITYRHLALGCFK----SNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE----KG 395 (464)
Q Consensus 324 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g 395 (464)
...|++.. .| +......+...|.. ..++++|..+|+.+ ...+. |+ ....|...|.. ..
T Consensus 307 ~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A-------a~~g~-~~--A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 307 EAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTA-------ARNGQ-NS--ADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp HHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH-------HTTTC-TT--HHHHHHHHHHSCTTBCC
T ss_pred HHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH-------HhhCh-HH--HHHHHHHHHHhCCCCCC
Confidence 99999887 43 55666666666655 34899999999998 34443 33 33466666654 46
Q ss_pred ChhhHHHHHHHHHHcCC
Q 044770 396 DVGNAENLFEELKKANY 412 (464)
Q Consensus 396 ~~~~A~~~~~~m~~~~~ 412 (464)
+.++|...|+...+.|.
T Consensus 373 d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp CHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 89999999999998874
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-14 Score=120.12 Aligned_cols=199 Identities=11% Similarity=0.010 Sum_probs=132.0
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHH
Q 044770 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVL 241 (464)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (464)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4455556666666666666666666666666543 2245556666666666666666666666666542 2345556666
Q ss_pred HHHHHhh-----------cChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHH
Q 044770 242 IILYGYL-----------AKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSV 310 (464)
Q Consensus 242 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 310 (464)
..++... |++++|...++......+.+...+..+...|...|++++|...|++..+.. .++..+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 6666666 778888888877777666667778888888889999999999999888866 677888889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 311 ISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 311 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
..+|...|++++|+..|++..+.. +-+...+..+...+...|++++|+..++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999988743 225677778888888899999998888876
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.7e-15 Score=122.17 Aligned_cols=206 Identities=15% Similarity=-0.049 Sum_probs=85.5
Q ss_pred CchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 044770 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL 139 (464)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 139 (464)
+...+..+...+...|++++|...|++.... +.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3444444444455555555555555444433 2234444444445555555555555555444432 1223334444433
Q ss_pred hcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHH
Q 044770 140 NSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219 (464)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 219 (464)
+...+ .. .+. .....|++++|...|++..+.. +-+...|..+..++...|++++|
T Consensus 83 ~~~~~-------------~~--~~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 83 YVALY-------------RQ--AED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHH-------------HT--CSS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhh-------------hh--hhh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHH
Confidence 33330 00 000 0001155555555555554432 11234444455555555555555
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHH
Q 044770 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLE 294 (464)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 294 (464)
+..|++..+.. .++..+..+..++...|++++|...++......+.+...+..+...+...|++++|...|++
T Consensus 138 ~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 138 EASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555443 34444444444444444444444444444443333444444455555555555555554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.1e-15 Score=127.91 Aligned_cols=130 Identities=9% Similarity=-0.096 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (464)
..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~ 120 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence 3445555555555555555555555555542 2234455555555555555555555555555432 2334455555555
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
+...|++++|...|+++.+. .|+.......+..+...|++++|...+++...
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 55555555555555555543 23333333333333444555555555554443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-13 Score=120.00 Aligned_cols=250 Identities=10% Similarity=0.017 Sum_probs=158.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCC--hhhHHHHHHHHHh
Q 044770 170 ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNN--WSTLDVLIILYGY 247 (464)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 247 (464)
.....+...|++++|...|++..+.. +.+...+..+..++...|++++|+..+++..+....++ ...+..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 34455555666666666666655542 11233555555566666666666666666555221111 1225556666666
Q ss_pred hcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHH
Q 044770 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327 (464)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 327 (464)
.|++++|...++......+.+...+..+...|...|++++|...|++..+. .+.+...|..+...+...+++++|...|
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665544455556777788888888888888888877764 3335566666663444455889999999
Q ss_pred HHHHhCCCCc-cHHHHHHHHHHHHhcCC---hHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 044770 328 KEMSMNGCKP-NAITYRHLALGCFKSNL---VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403 (464)
Q Consensus 328 ~~m~~~g~~p-~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 403 (464)
+++.+. .| +...+..+...+...|+ +++|...++++++................|..+...|...|++++|...
T Consensus 166 ~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 166 VKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888874 34 35667777777777787 8889999999876543211111001235678899999999999999999
Q ss_pred HHHHHHcCCCCc-HHHHHHHHHH
Q 044770 404 FEELKKANYTKY-TFVYNTLIKA 425 (464)
Q Consensus 404 ~~~m~~~~~~p~-~~~~~~li~~ 425 (464)
|++..+.. |+ ...+..+-..
T Consensus 244 ~~~al~~~--p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 244 WKNILALD--PTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHC--TTCHHHHHHHC--
T ss_pred HHHHHhcC--ccHHHHHHHhhhh
Confidence 99999865 54 4355444333
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.6e-14 Score=122.15 Aligned_cols=200 Identities=11% Similarity=0.005 Sum_probs=139.1
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc----hhHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN----ELLYNN 100 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~ 100 (464)
++..+......+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...|++.....++ ..+|..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 34566677788888889999999998888743 234557788888888888888888888877664222 234778
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 044770 101 LVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHN 180 (464)
Q Consensus 101 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (464)
+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...|++..+.. +.+...+..+...+...++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888753 3355677777788888888888888888777653 4455566666623334457
Q ss_pred hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCh---hhHHHHHHHHHHhc
Q 044770 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL---YTVAETYVEALEKS 229 (464)
Q Consensus 181 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~ 229 (464)
+++|.+.|++..+.. +.+...+..+..++...++ +++|...+++..+.
T Consensus 158 ~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 158 YVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 888888887777652 2235556666666666666 66677777666543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-14 Score=124.31 Aligned_cols=247 Identities=13% Similarity=0.019 Sum_probs=192.3
Q ss_pred hhCcHHHHHHHHHHHHHcCC---CCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH
Q 044770 107 DKGVIKLSLEYMKKMRVLGH---SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183 (464)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 183 (464)
..|++++|+..|+++.+... +.+..++..+...+...|++++|...|+++.+.. +.+..+|..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45889999999999998632 2246778889999999999999999999998865 5578899999999999999999
Q ss_pred HHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc
Q 044770 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263 (464)
Q Consensus 184 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (464)
|...|++..+.. +.+...+..+..++.+.|++++|...++++.+.. |+.......+..+...|+.++|...++....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999998763 3357888999999999999999999999998753 4444444555666778999999999987766
Q ss_pred CCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHH
Q 044770 264 LPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK---ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAI 340 (464)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 340 (464)
..+.+...+ .++..+...++.++|...++......... +...|..+...|...|++++|...|++..+. .|+.
T Consensus 173 ~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~- 248 (275)
T 1xnf_A 173 KSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN- 248 (275)
T ss_dssp HSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT-
T ss_pred cCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh-
Confidence 444444444 46777788888899999999887643211 2578889999999999999999999999984 4532
Q ss_pred HHHHHHHHHHhcCChHHHHHHH
Q 044770 341 TYRHLALGCFKSNLVEEGFKAL 362 (464)
Q Consensus 341 ~~~~ll~~~~~~~~~~~a~~~~ 362 (464)
+.....++...|++++|++.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 222344566778888877665
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-13 Score=118.08 Aligned_cols=200 Identities=10% Similarity=0.000 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (464)
...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455555556666666666666666655542 2244455555555555555555555555555432 2344455555555
Q ss_pred HHccCChhHHHHHHHHHHhCCCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhh
Q 044770 175 EANDHNIEGLMKVYSDMKRSEVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (464)
+...|++++|.++|+++.+.+..| +...+..+..++...|++++|...++++.+.
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------------ 170 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL------------------------ 170 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------------
Confidence 555555555555555554421222 2334444445555555555555555554443
Q ss_pred HHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 254 LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
.+.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...++++.+
T Consensus 171 -----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 171 -----------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp -----------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2222233444444555555555555555554442 222344445555555555555555555555554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-11 Score=117.44 Aligned_cols=429 Identities=10% Similarity=0.018 Sum_probs=294.0
Q ss_pred hhHHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcC---hHHHHHHhhhcC
Q 044770 13 AFQSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHG---ISQGEKLFCCIP 89 (464)
Q Consensus 13 ~l~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~ 89 (464)
.++.-... .|.+...+..++..+.+.+.++.+..+|+.+.... +.+...|...+..-.+.|+ ++.+..+|++..
T Consensus 54 ~lE~~l~~-np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 54 KLNDMIEE-QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHH-CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 44444444 35789999999999999999999999999999864 5567788888888888888 999999999998
Q ss_pred CCC---CchhHHHHHHHHHHhhCcH--------HHHHHHHHHHHH-cCC-CCc-hhhHHHHHHHhcC---------CCCc
Q 044770 90 KDY---QNELLYNNLVIACLDKGVI--------KLSLEYMKKMRV-LGH-SIS-YLVFNRLIILNSS---------PGRR 146 (464)
Q Consensus 90 ~~~---~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~~~-~~~-~~~~~~l~~~~~~---------~~~~ 146 (464)
... |++..|...+....+.++. +...++|+..+. .|. .|+ ...|...+..... .+++
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 885 8888998888766665543 345578877665 465 454 4678777766543 2346
Q ss_pred ccHHHHHHHHHhCCCCCChhhHHHHHHHHHc-------------cCChhHHHHHHHHHHh--CCCC--------------
Q 044770 147 KTIPNILRQMKADKVAPHVSTFHILMKIEAN-------------DHNIEGLMKVYSDMKR--SEVE-------------- 197 (464)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~m~~--~~~~-------------- 197 (464)
+.+..+|+..+......-..+|......-.. ..+++.|...+.++.. .++.
T Consensus 211 ~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 211 QYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp HHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 6788999998853211112333322211111 1223445555554321 1111
Q ss_pred -C-----c---HhHHHHHHHHHHhcC-------hhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHH-HHHHH
Q 044770 198 -P-----N---EVSYCILATAHAVAR-------LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE-RIWAT 260 (464)
Q Consensus 198 -p-----~---~~~~~~li~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~ 260 (464)
| + ...|...+.---..+ ..+.+..+|++.... .+-....|...+..+...|+.+.|. .+++.
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~r 369 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKL 369 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1 0 123333333222221 123456778888776 5557788888888888999999996 99999
Q ss_pred hccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccc---------cCC------------hhhHHHHHHHHHhcCC
Q 044770 261 VQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ---------LKA------------TEQYNSVISVYCKNGF 319 (464)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~li~~~~~~~~ 319 (464)
.....+.+...|...+....+.|+++.|.++|+.+.+... .|+ ...|...+....+.|.
T Consensus 370 Ai~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~ 449 (679)
T 4e6h_A 370 GQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG 449 (679)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC
Confidence 8886666666777888888899999999999999886320 131 2368888888888899
Q ss_pred hhHHHHHHHHHHhC-CCCccHHHHHHHHHHHHhc-CChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCCh
Q 044770 320 IDKASGLLKEMSMN-GCKPNAITYRHLALGCFKS-NLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV 397 (464)
Q Consensus 320 ~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 397 (464)
.+.|..+|.+.++. +. +....|......-.+. ++.+.|..+|+.+++. ..-+...+...++.....|+.
T Consensus 450 l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--------~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 450 LAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY--------FATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHhCCCH
Confidence 99999999999885 21 1223333322222333 5599999999999642 222455567888888889999
Q ss_pred hhHHHHHHHHHHcCCCC--cHHHHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCCHHHHHHHH
Q 044770 398 GNAENLFEELKKANYTK--YTFVYNTLIKAYVKAKIN--DPNLLRRMILGGARPDAETYSLLK 456 (464)
Q Consensus 398 ~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~~~t~~~L~ 456 (464)
+.|..+|++.......+ ....|...+.--.+.|+. +.++.++|.+.- |+......+.
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~ 581 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFT 581 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHH
Confidence 99999999998865322 345899999999999986 789999999863 5555555553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-13 Score=123.06 Aligned_cols=247 Identities=10% Similarity=0.043 Sum_probs=131.3
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCC-cccHHHHHHHHHhCCCCCChhhHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR-RKTIPNILRQMKADKVAPHVSTFHILMK 173 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (464)
..+|+.+...+...|++++|+..+++.++.. +-+..+|+.+..++...|+ +++|+..|+++++.. +.+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3445555555555555555555555555542 2234455555555555554 555555555555543 334455555555
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHh-hcChh
Q 044770 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY-LAKGK 252 (464)
Q Consensus 174 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 252 (464)
++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++.+.. +.+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 5555555555555555555442 1244455555555555555555555555555542 2244555555555555 33334
Q ss_pred hH-----HHHHHHhccCCCCchhhHHHHHHHhhccC--ChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcC-------
Q 044770 253 DL-----ERIWATVQELPNVRSKSYVLAIEAFGRIA--QVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG------- 318 (464)
Q Consensus 253 ~a-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~------- 318 (464)
+| ...++......+.+...|..+...+...| ++++|.+.+..+ + ..+.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccch
Confidence 44 34555555544445555666666666655 466677666666 2 33345556666666666653
Q ss_pred --ChhHHHHHHHHH-HhCCCCccH-HHHHHHHHHH
Q 044770 319 --FIDKASGLLKEM-SMNGCKPNA-ITYRHLALGC 349 (464)
Q Consensus 319 --~~~~a~~~~~~m-~~~g~~p~~-~~~~~ll~~~ 349 (464)
..++|+.+|+++ .+ +.|.. ..|..+...+
T Consensus 331 ~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 331 EDILNKALELCEILAKE--KDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHH
Confidence 246777777776 44 34443 3344444333
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-14 Score=132.70 Aligned_cols=299 Identities=9% Similarity=-0.065 Sum_probs=175.7
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc----hhhHHHHHHHhcCCCCcccHHHHHHHHHhC----CCCC-Chh
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS----YLVFNRLIILNSSPGRRKTIPNILRQMKAD----KVAP-HVS 166 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 166 (464)
..+......+...|++++|+..|++..+.+. .+ ..++..+...+...|++++|...+++.... +-.| ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3444445555555666666666655555421 11 234555555555556666666555554321 1111 133
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCC----C-CCcHhHHHHHHHHHHhcCh--------------------hhHHHH
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSE----V-EPNEVSYCILATAHAVARL--------------------YTVAET 221 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~-~p~~~~~~~li~~~~~~~~--------------------~~~a~~ 221 (464)
++..+...+...|++++|...+++..+.. - .....++..+...+...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 45556666666666666666666554321 0 0013355666666666777 677776
Q ss_pred HHHHHHhcc--C--CC-ChhhHHHHHHHHHhhcChhhHHHHHHHhccC----CC--CchhhHHHHHHHhhccCChHHHHH
Q 044770 222 YVEALEKSM--T--GN-NWSTLDVLIILYGYLAKGKDLERIWATVQEL----PN--VRSKSYVLAIEAFGRIAQVSRAEE 290 (464)
Q Consensus 222 ~~~~~~~~~--~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~l~~~~~~~g~~~~a~~ 290 (464)
.+++..... . .+ ...++..+...+...|++++|...++..... +. .....+..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 666654321 1 11 1235566666677777777777766665441 11 112257777888888888888888
Q ss_pred HHHHHHhcccc-C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-cHHHHHHHHHHHHhcCChHHHHH
Q 044770 291 LWLEMQSVKQL-K----ATEQYNSVISVYCKNGFIDKASGLLKEMSMN----GCKP-NAITYRHLALGCFKSNLVEEGFK 360 (464)
Q Consensus 291 ~~~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~ 360 (464)
.+++..+.... + ...++..+...|...|++++|...+++..+. +-.+ ...++..+...+...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88877642211 1 1456778888888889999999888887652 1111 14567777788888899999999
Q ss_pred HHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChh
Q 044770 361 ALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVG 398 (464)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 398 (464)
.++.+++.... .+..+ ...++..+...+...|+..
T Consensus 329 ~~~~al~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 329 FAEKHLEISRE---VGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHH---hcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99988765432 22222 3455667777777777664
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-13 Score=117.03 Aligned_cols=199 Identities=14% Similarity=0.012 Sum_probs=160.6
Q ss_pred chhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHh
Q 044770 62 ELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILN 140 (464)
Q Consensus 62 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 140 (464)
...+..+...+...|++++|...|+++... +.+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 467888888999999999999999998765 3467889999999999999999999999999864 34678889999999
Q ss_pred cCCCCcccHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHH
Q 044770 141 SSPGRRKTIPNILRQMKADKVAP-HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219 (464)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 219 (464)
...|++++|.+.++++.+.+..| +...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998733344 56678889999999999999999999988764 33577888888999999999999
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc
Q 044770 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263 (464)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (464)
...++++.+. .+.+...+..+...+...|+.++|.+.++.+..
T Consensus 195 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999998775 234445555555555555555555555555544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-13 Score=127.25 Aligned_cols=346 Identities=10% Similarity=-0.028 Sum_probs=231.9
Q ss_pred HHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcH---HHHHHHHHHHHHcCCCCchhhHHHHHHHhcCC
Q 044770 67 YLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVI---KLSLEYMKKMRVLGHSISYLVFNRLIILNSSP 143 (464)
Q Consensus 67 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 143 (464)
.+...+.+.|++++|.++|++..+. .+...+..+...|...|++ ++|+..|++..+. +...+..+...+...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~-g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL-GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-TCCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 4667788899999999999987653 3455566666777778888 8999999988864 555666666644444
Q ss_pred C-----CcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChh---HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCh
Q 044770 144 G-----RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE---GLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215 (464)
Q Consensus 144 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 215 (464)
+ ++++|...|+...+.| .++ .+..|...|...+..+ ++.+.+......| +...+..+...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG-EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT-CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCC-CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 4 6789999999999876 333 6667777777666544 3555555555443 34566677777888886
Q ss_pred hhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhc---ChhhHHHHHHHhccCCCCchhhHHHHHHHhhcc----CChHHH
Q 044770 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA---KGKDLERIWATVQELPNVRSKSYVLAIEAFGRI----AQVSRA 288 (464)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a 288 (464)
++++......+.+.-...++..+..+...|...| +.++|.+.++......+.....+..+...|... +++++|
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 6665555444444334445558888889999999 899999999999888888876667788888765 799999
Q ss_pred HHHHHHHHhccccCChhhHHHHHHH-H--HhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC-----ChHHHHH
Q 044770 289 EELWLEMQSVKQLKATEQYNSVISV-Y--CKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSN-----LVEEGFK 360 (464)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~ 360 (464)
...|++.. . -++..+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|..
T Consensus 237 ~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 237 QALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 99999988 3 355677777776 4 46899999999999999877 5666666766666 45 9999999
Q ss_pred HHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc-C---C-
Q 044770 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAE----KGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA-K---I- 431 (464)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g---~- 431 (464)
.|+.+ . .-+...+..|...|.. ..++++|...|++..+.|. ......|-..|..- | +
T Consensus 309 ~~~~A-------a----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 309 HFEKA-------V----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp HHHTT-------T----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCH
T ss_pred HHHHH-------h----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCH
Confidence 99988 3 4456667778777776 3489999999999998774 33455555555532 1 2
Q ss_pred -ChhHHHHHHHhCCC
Q 044770 432 -NDPNLLRRMILGGA 445 (464)
Q Consensus 432 -~a~~~~~~m~~~~~ 445 (464)
.|..+|..-.+.|.
T Consensus 375 ~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 375 LNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCC
Confidence 17777777777663
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-13 Score=122.20 Aligned_cols=230 Identities=10% Similarity=0.033 Sum_probs=170.0
Q ss_pred hhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCc-HHHHHHHHHHHHHcCCCCchhhHHHHHHHh
Q 044770 63 LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGV-IKLSLEYMKKMRVLGHSISYLVFNRLIILN 140 (464)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 140 (464)
..|..+...+...|++++|+..|+++....| +..+|+.+...+...|+ +++|+..|++.++.. +-+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3566777777888888888888888776634 56778888888888886 888888888888764 33667788888888
Q ss_pred cCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHh-cChhhHH
Q 044770 141 SSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV-ARLYTVA 219 (464)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~~~~~~a 219 (464)
...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..|+++.+... -+...|+.+..++.+ .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHH
Confidence 88888888888888888765 55677788888888888888888888888877642 256777878777777 5554666
Q ss_pred -----HHHHHHHHhccCCCChhhHHHHHHHHHhhc--ChhhHHHHHHHhccCCCCchhhHHHHHHHhhccC---------
Q 044770 220 -----ETYVEALEKSMTGNNWSTLDVLIILYGYLA--KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIA--------- 283 (464)
Q Consensus 220 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------- 283 (464)
+..+++.... .+.+...|..+..++...| +.+++.+.+..+ ...+.+...+..+...|.+.|
T Consensus 255 ~~~~el~~~~~Al~l-~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 255 VLEREVQYTLEMIKL-VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 4777777665 2345667777777777777 577888877777 555556667777788887764
Q ss_pred ChHHHHHHHHHH-Hh
Q 044770 284 QVSRAEELWLEM-QS 297 (464)
Q Consensus 284 ~~~~a~~~~~~~-~~ 297 (464)
..++|.++|+++ .+
T Consensus 333 ~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 333 ILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 247888888887 44
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-12 Score=110.53 Aligned_cols=223 Identities=8% Similarity=-0.032 Sum_probs=140.6
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHh----cChhhHHHHHHHHHHhccCCCChhhHHH
Q 044770 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV----ARLYTVAETYVEALEKSMTGNNWSTLDV 240 (464)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (464)
..++..+...+...|++++|...|++..+. -+...+..+...+.. .+++++|...|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 334445555555555666666666555542 133445555555555 556666666666555543 3445555
Q ss_pred HHHHHHh----hcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc----cCChHHHHHHHHHHHhccccCChhhHHHHHH
Q 044770 241 LIILYGY----LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR----IAQVSRAEELWLEMQSVKQLKATEQYNSVIS 312 (464)
Q Consensus 241 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 312 (464)
+...+.. .++.++|...++...... +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 5555555 555555555555554432 33446666666666 777788888887777754 4456667777
Q ss_pred HHHh----cCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHH
Q 044770 313 VYCK----NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK----SNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384 (464)
Q Consensus 313 ~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~ 384 (464)
.|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...++.+.+ .+ | ...+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-------~~--~-~~a~ 221 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE-------LE--N-GGGC 221 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH-------TT--C-HHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh-------CC--C-HHHH
Confidence 7776 778888888888877754 45566667777777 7888888888887732 21 2 4556
Q ss_pred HHHHHHHHh----cCChhhHHHHHHHHHHcC
Q 044770 385 LSIIEIFAE----KGDVGNAENLFEELKKAN 411 (464)
Q Consensus 385 ~~li~~~~~----~g~~~~A~~~~~~m~~~~ 411 (464)
..+...|.+ .|++++|...|++..+.|
T Consensus 222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 677777777 788888888888887765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-14 Score=132.31 Aligned_cols=283 Identities=8% Similarity=-0.074 Sum_probs=189.8
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCch----hhHHHHHHHhcCCCCcccHHHHHHHHHhC----C-CCCCh
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISY----LVFNRLIILNSSPGRRKTIPNILRQMKAD----K-VAPHV 165 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 165 (464)
...+..+...+...|++++|+..|++..+.+.. +. ..+..+...+...|++++|...+++..+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345556677788888999999999888886322 22 46777777788888888888888877652 1 12234
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhC----CC-CCcHhHHHHHHHHHHhcCh-----------------hhHHHHHH
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRS----EV-EPNEVSYCILATAHAVARL-----------------YTVAETYV 223 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~~~-----------------~~~a~~~~ 223 (464)
.++..+...|...|++++|...|++..+. +- .....++..+...+...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 56667777777888888888887776542 10 1123456666666777777 56665555
Q ss_pred HHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcccc-C
Q 044770 224 EALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL-K 302 (464)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~ 302 (464)
++..... ... .........+..+...|...|++++|...+++..+.... +
T Consensus 207 ~~al~~~----------------------------~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 207 QENLKLM----------------------------RDL-GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHH----------------------------HHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH----------------------------HHc-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5543210 000 000111234667777788888888888888776653211 1
Q ss_pred C----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCC----CC-ccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhh
Q 044770 303 A----TEQYNSVISVYCKNGFIDKASGLLKEMSMNG----CK-PNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKK 373 (464)
Q Consensus 303 ~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 373 (464)
+ ...+..+...|...|++++|...+++..+.. .. ....++..+...+...|++++|...++++++....
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-- 335 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE-- 335 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--
Confidence 1 2367888888999999999999998876521 11 12466778888899999999999999999776443
Q ss_pred hcCCC-CcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 374 VRSST-PWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 374 ~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
.+.. ....++..+...|.+.|++++|...+++..+.
T Consensus 336 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 -LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp -HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1211 23456778999999999999999999998874
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.9e-13 Score=111.01 Aligned_cols=206 Identities=12% Similarity=-0.031 Sum_probs=111.7
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhcc
Q 044770 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI 282 (464)
Q Consensus 203 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (464)
+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++......+.+...+..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKS-DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 333344444444444444444444332 1122333333344444444444444444443333333334455566666666
Q ss_pred -CChHHHHHHHHHHHhccccC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHH
Q 044770 283 -AQVSRAEELWLEMQSVKQLK-ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFK 360 (464)
Q Consensus 283 -g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 360 (464)
|++++|...++.+.+....| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHH
Confidence 66777777766666521222 24556666777777777777777777776642 1235666666777777777777777
Q ss_pred HHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHH
Q 044770 361 ALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVY 419 (464)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 419 (464)
.++.+++. ....+...+..+...+...|+.++|..+++.+.+.. |+....
T Consensus 169 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~ 218 (225)
T 2vq2_A 169 YFKKYQSR-------VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF--PYSEEL 218 (225)
T ss_dssp HHHHHHHH-------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHHHh-------CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHH
Confidence 77776432 111344455666666677777777777777776543 444433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-13 Score=112.13 Aligned_cols=134 Identities=8% Similarity=-0.013 Sum_probs=83.0
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (464)
+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 44566666667777777777777777666643 3345566666666666666666666666666543 344556666666
Q ss_pred HHHcc-CChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHHHHHHHHHhc
Q 044770 174 IEAND-HNIEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 174 ~~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 229 (464)
.+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666 777777777766665222222 445556666666666666666666666554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-14 Score=130.40 Aligned_cols=301 Identities=10% Similarity=-0.054 Sum_probs=226.2
Q ss_pred CCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCC----hhhHHHHHHHHHccCChhHHHHHHHHHHhC----CCCC
Q 044770 127 SISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH----VSTFHILMKIEANDHNIEGLMKVYSDMKRS----EVEP 198 (464)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p 198 (464)
.+....+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|...+++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3455566777888999999999999999998863 233 357888899999999999999999986532 2122
Q ss_pred -cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCC-CC----hhhHHHHHHHHHhhcC--------------------hh
Q 044770 199 -NEVSYCILATAHAVARLYTVAETYVEALEKSMTG-NN----WSTLDVLIILYGYLAK--------------------GK 252 (464)
Q Consensus 199 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~ 252 (464)
...++..+...+...|++++|...+++....... ++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2456778888899999999999999987654211 12 3477888899999999 99
Q ss_pred hHHHHHHHhcc----C--CCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcccc-CC----hhhHHHHHHHHHhcCChh
Q 044770 253 DLERIWATVQE----L--PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL-KA----TEQYNSVISVYCKNGFID 321 (464)
Q Consensus 253 ~a~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~ 321 (464)
.|...++.... . .+.....+..+...|...|++++|...+++..+.... ++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 99988887654 1 2223346788899999999999999999988753211 11 237888999999999999
Q ss_pred HHHHHHHHHHhC----CCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcC
Q 044770 322 KASGLLKEMSMN----GCKPN-AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKG 395 (464)
Q Consensus 322 ~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 395 (464)
+|...+++..+. +..+. ..++..+...+...|++++|...++.+++.... .+..+ ...++..+...|...|
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~la~~~~~~g 321 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE---LNDRIGEGRACWSLGNAYTALG 321 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHcC
Confidence 999999988752 11111 457778888899999999999999999765432 22222 2556788999999999
Q ss_pred ChhhHHHHHHHHHHc----CCCCc-HHHHHHHHHHHHHcCC
Q 044770 396 DVGNAENLFEELKKA----NYTKY-TFVYNTLIKAYVKAKI 431 (464)
Q Consensus 396 ~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~ 431 (464)
++++|...+++..+. +-.+. ..++..+...+...|+
T Consensus 322 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 322 NHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 999999999987642 22222 3377788888888875
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.5e-14 Score=119.90 Aligned_cols=195 Identities=8% Similarity=0.007 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhc
Q 044770 63 LDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141 (464)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 141 (464)
..+..+...+...|++++|...|+++... +.+...+..+...+...|++++|+..|+++.+.. +.+..++..+...+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 34444555555555555555555555443 2234555555555555555555555555555442 223444455555555
Q ss_pred CCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHH
Q 044770 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221 (464)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 221 (464)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554432 3334444455555555555555555555544432 1234444444455555555555555
Q ss_pred HHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHh
Q 044770 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261 (464)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (464)
.++++.+.. +.+..++..+..++...|+.++|...++.+
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555544431 122333333334444444444444443333
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-12 Score=113.29 Aligned_cols=223 Identities=12% Similarity=-0.004 Sum_probs=127.1
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcC----CCCcccHHHHHHHHHhCCCCCChhhHH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS----PGRRKTIPNILRQMKADKVAPHVSTFH 169 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (464)
+..++..+...+...|++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34455556666666666666666666666522 34455555555655 666666666666666543 455555
Q ss_pred HHHHHHHc----cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHh----cChhhHHHHHHHHHHhccCCCChhhHHHH
Q 044770 170 ILMKIEAN----DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV----ARLYTVAETYVEALEKSMTGNNWSTLDVL 241 (464)
Q Consensus 170 ~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (464)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 666666666666666543 45556666666666 666666666666665543 33444444
Q ss_pred HHHHHh----hcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc----cCChHHHHHHHHHHHhccccCChhhHHHHHHH
Q 044770 242 IILYGY----LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR----IAQVSRAEELWLEMQSVKQLKATEQYNSVISV 313 (464)
Q Consensus 242 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 313 (464)
...+.. .++.++|...++...+.. +...+..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 444444 445555555555444332 12234455555555 566666666666655543 13445555555
Q ss_pred HHh----cCChhHHHHHHHHHHhC
Q 044770 314 YCK----NGFIDKASGLLKEMSMN 333 (464)
Q Consensus 314 ~~~----~~~~~~a~~~~~~m~~~ 333 (464)
|.. .+++++|...|++..+.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHc
Confidence 555 56666666666666554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-13 Score=117.23 Aligned_cols=199 Identities=10% Similarity=0.048 Sum_probs=104.4
Q ss_pred hhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 044770 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAH 210 (464)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 210 (464)
..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344444455555555555555555555432 3344555555555555666666666665555432 22344555555555
Q ss_pred HhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHH
Q 044770 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290 (464)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 290 (464)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+....+.+...+..+...+...|++++|..
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 55666666666665555442 23344555555555555555555555555555444444556666666777777777777
Q ss_pred HHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044770 291 LWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333 (464)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 333 (464)
.|+.+.+.. +.+..+|..+...|...|++++|...++++.+.
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777666532 234556677777777777777777777777663
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.6e-14 Score=125.03 Aligned_cols=283 Identities=8% Similarity=-0.060 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc----hhhHHHHHHHhcCCCCcccHHHHHHHHHhC----CCC-CChh
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS----YLVFNRLIILNSSPGRRKTIPNILRQMKAD----KVA-PHVS 166 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 166 (464)
..+......+...|++++|+..|+++.+.... + ...+..+...+...|++++|...+++..+. +-. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34555667788888999999999888876322 2 356777777888888888888888876542 111 1244
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCC-CCc----HhHHHHHHHHHHhcCh--------------------hhHHHH
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEV-EPN----EVSYCILATAHAVARL--------------------YTVAET 221 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~--------------------~~~a~~ 221 (464)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 566777777788888888888777654210 111 2355666666777777 566666
Q ss_pred HHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcccc
Q 044770 222 YVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL 301 (464)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 301 (464)
.+++..... ...+ ........+..+...+...|++++|...+++..+....
T Consensus 165 ~~~~a~~~~---------------~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 165 LYEENLSLV---------------TALG--------------DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHHHHH---------------HHHT--------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------HhcC--------------CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555543210 0000 00111224666777778888888888888776642111
Q ss_pred -C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhh
Q 044770 302 -K----ATEQYNSVISVYCKNGFIDKASGLLKEMSMN----GCKP-NAITYRHLALGCFKSNLVEEGFKALELGMKLITT 371 (464)
Q Consensus 302 -~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 371 (464)
+ ...++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...++.+++....
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 1 1336788888899999999999999887652 1111 1456777888899999999999999999765432
Q ss_pred hhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 372 KKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 372 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
. ........++..+...|.+.|++++|...+++..+.
T Consensus 296 ~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 L--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp H--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred c--CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1 111123456778999999999999999999988864
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.3e-14 Score=129.16 Aligned_cols=276 Identities=11% Similarity=-0.031 Sum_probs=197.8
Q ss_pred hhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc-h----hHHHHHHHHHHhhCcHHHHHHHHHHHHHc----C-CCCchhh
Q 044770 63 LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN-E----LLYNNLVIACLDKGVIKLSLEYMKKMRVL----G-HSISYLV 132 (464)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~ 132 (464)
..+..+...+...|++++|...|+++....|+ . ..|..+...+...|++++|+..+++..+. + .+....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34556677888999999999999988766343 2 47889999999999999999999988763 1 1234567
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHhC----C-CCCChhhHHHHHHHHHccCC-----------------hhHHHHHHHH
Q 044770 133 FNRLIILNSSPGRRKTIPNILRQMKAD----K-VAPHVSTFHILMKIEANDHN-----------------IEGLMKVYSD 190 (464)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 190 (464)
+..+...+...|++++|...+++..+. + .+....++..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 888889999999999999999998763 1 12234578888899999999 8999988887
Q ss_pred HHhC----CCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCC-CChhhHHHHHHHHHhhcChhhHHHHHHHhccC
Q 044770 191 MKRS----EVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTG-NNWSTLDVLIILYGYLAKGKDLERIWATVQEL 264 (464)
Q Consensus 191 m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (464)
..+. +..+ ...++..+...+...|++++|...+++..+.... ++..
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------- 260 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA---------------------------- 260 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH----------------------------
Confidence 6532 1111 2346667777788888888888888776553211 0100
Q ss_pred CCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcccc-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC----C
Q 044770 265 PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL-----KATEQYNSVISVYCKNGFIDKASGLLKEMSMNG----C 335 (464)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~ 335 (464)
.....+..+...|...|++++|...|++..+.... ....++..+...|...|++++|...+++..+.. .
T Consensus 261 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 261 --AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp --HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 00123566677777788888888877776642211 114567778888888999999999888876521 1
Q ss_pred Cc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 336 KP-NAITYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 336 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
.+ ...++..+...+...|++++|...+++++++
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 1346777888889999999999999998653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.5e-13 Score=122.89 Aligned_cols=302 Identities=10% Similarity=-0.010 Sum_probs=166.1
Q ss_pred HHhhcchHHHHHHHHHHHHcCCC-CCCc--hhHHHHHHH--HHhhcChHHHH-----------HHhhhcCCCCCchh---
Q 044770 36 LRKLQLNKRALEVMEWVIRERPY-RPKE--LDYSYLLEF--TIKNHGISQGE-----------KLFCCIPKDYQNEL--- 96 (464)
Q Consensus 36 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~--~~~~~l~~~--~~~~g~~~~a~-----------~~~~~~~~~~~~~~--- 96 (464)
+.+.+++++|..+++.+.+..+. ..+. ..|-.++.. ..-.++++.+. +.++.+.....+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45789999999999998764321 1222 222333321 11223334444 55555433211111
Q ss_pred ---HHHHHHHHHHhhCcHHHHHHHHHHHHHc----CCCC-chhhHHHHHHHhcCCCCcccHHHHHHHHHhC--CC----C
Q 044770 97 ---LYNNLVIACLDKGVIKLSLEYMKKMRVL----GHSI-SYLVFNRLIILNSSPGRRKTIPNILRQMKAD--KV----A 162 (464)
Q Consensus 97 ---~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~----~ 162 (464)
.+......+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+++..+. .. +
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 1222455667778888888888777653 1111 2345666666777777777777777666542 10 0
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHhC----CCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhh
Q 044770 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRS----EVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST 237 (464)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (464)
....+++.+...|...|++++|...|++..+. +-.+ ...++..+..+|...|++++|...+++..+.....
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~---- 257 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES---- 257 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh----
Confidence 11235555666666666666666666665432 1000 11245555555666666666666665554310000
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHhccCC-CCchhhHHHHHHHhhccCChHHHHHHHHHHHhcc----ccCChhhHHHHHH
Q 044770 238 LDVLIILYGYLAKGKDLERIWATVQELP-NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK----QLKATEQYNSVIS 312 (464)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~ 312 (464)
.. +....++..+...|.+.|++++|...+++..+.. .+.....+..+..
T Consensus 258 --------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ 311 (383)
T 3ulq_A 258 --------------------------NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKS 311 (383)
T ss_dssp --------------------------TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred --------------------------ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 2223345566666666777777777766655421 1112223556666
Q ss_pred HHHhcCC---hhHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHh
Q 044770 313 VYCKNGF---IDKASGLLKEMSMNGCKPN-AITYRHLALGCFKSNLVEEGFKALELGMKLIT 370 (464)
Q Consensus 313 ~~~~~~~---~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 370 (464)
.+...|+ +++|+.++++. +..|+ ...+..+...|...|++++|...++.+++...
T Consensus 312 ~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 312 LYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 7777777 66666666654 23333 34566677778888888888888888877644
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-12 Score=117.74 Aligned_cols=229 Identities=10% Similarity=0.053 Sum_probs=140.8
Q ss_pred HHHHHHccCChhHHHHHHHHHHhC----CCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCC------ChhhHH
Q 044770 171 LMKIEANDHNIEGLMKVYSDMKRS----EVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTGN------NWSTLD 239 (464)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 239 (464)
....+...|++++|...|++..+. +-.+ ...++..+...+...|++++|...+++..+..... ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566778888888888877653 1111 23566777777888888888888887765432111 124556
Q ss_pred HHHHHHHhhcChhhHHHHHHHhccC------CCCchhhHHHHHHHhhccCChHHHHHHHHHHHhc----cc-cCChhhHH
Q 044770 240 VLIILYGYLAKGKDLERIWATVQEL------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV----KQ-LKATEQYN 308 (464)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 308 (464)
.+..+|...|++++|...++..... ......++..+...|...|++++|...|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6666677777777777766655431 1111235667777777778888887777776652 22 33355677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC---CCc-cHHHHHHHHHHHHhcCC---hHHHHHHHHHhHHHHhhhhhcCCCC-c
Q 044770 309 SVISVYCKNGFIDKASGLLKEMSMNG---CKP-NAITYRHLALGCFKSNL---VEEGFKALELGMKLITTKKVRSSTP-W 380 (464)
Q Consensus 309 ~li~~~~~~~~~~~a~~~~~~m~~~g---~~p-~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~p-~ 380 (464)
.+...|...|++++|...+++..+.. -.| ....+..+...+...|+ +++|+.+++.. +..| .
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~----------~~~~~~ 338 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK----------MLYADL 338 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT----------TCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----------cCHHHH
Confidence 77777777888888887777765421 011 12234455555666676 55555555543 2222 2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 381 LETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
...+..+...|...|++++|...+++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34566777777778888888777777654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-13 Score=120.93 Aligned_cols=275 Identities=12% Similarity=0.004 Sum_probs=188.6
Q ss_pred hhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc-----hhHHHHHHHHHHhhCcHHHHHHHHHHHHHc----CCC-Cchhh
Q 044770 63 LDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN-----ELLYNNLVIACLDKGVIKLSLEYMKKMRVL----GHS-ISYLV 132 (464)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~ 132 (464)
..+......+...|++++|...|+++....|+ ...|..+...+...|++++|+..+++..+. +.. ....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34556677888999999999999987665332 367888999999999999999999987653 212 22567
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHccCC--------------------hhHHHHH
Q 044770 133 FNRLIILNSSPGRRKTIPNILRQMKADKV-APH----VSTFHILMKIEANDHN--------------------IEGLMKV 187 (464)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~ 187 (464)
+..+...+...|++++|...+++..+..- .++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 88888899999999999999999865310 112 3477888899999999 8999988
Q ss_pred HHHHHhC----CCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCC-CChhhHHHHHHHHHhhcChhhHHHHHHHh
Q 044770 188 YSDMKRS----EVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTG-NNWSTLDVLIILYGYLAKGKDLERIWATV 261 (464)
Q Consensus 188 ~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (464)
+++.... +..+ ...++..+...+...|++++|...+++..+.... ++..
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------------------- 220 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA------------------------- 220 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH-------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH-------------------------
Confidence 8876532 1111 2345666777778888888888888776543110 0100
Q ss_pred ccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcccc-C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 044770 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL-K----ATEQYNSVISVYCKNGFIDKASGLLKEMSMN--- 333 (464)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 333 (464)
.....+..+...+...|++++|...+++..+.... + ...++..+...+...|++++|...+++..+.
T Consensus 221 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 221 -----AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp -----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 01113555666666677777777777665542111 0 1446677777788888888888888776542
Q ss_pred -CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHH
Q 044770 334 -GCKP-NAITYRHLALGCFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 334 -g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 367 (464)
+-.+ ...++..+...+...|++++|...++++++
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1111 134566777778888888888888888854
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-11 Score=108.83 Aligned_cols=217 Identities=7% Similarity=-0.004 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHhc-------CCCCc-------ccHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 044770 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNS-------SPGRR-------KTIPNILRQMKADKVAPHVSTFHILMKIEAN 177 (464)
Q Consensus 112 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (464)
++|+.+|++..... +-+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56677777776642 345556666665554 24665 6777777777662113344567777777777
Q ss_pred cCChhHHHHHHHHHHhCCCCCc-Hh-HHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHH-hhcChhhH
Q 044770 178 DHNIEGLMKVYSDMKRSEVEPN-EV-SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG-YLAKGKDL 254 (464)
Q Consensus 178 ~~~~~~a~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 254 (464)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+... .+...|........ ..|+.+.|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777664 343 22 566666666777777777777777665422 22333322222111 13555555
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcc-ccC--ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 255 ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK-QLK--ATEQYNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
..+|+......+.+...|..++..+.+.|++++|..+|++..... .+| ....|..++..+.+.|+.+.|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555544333344445555555555555555555555555531 122 23345555555555555555555555555
Q ss_pred h
Q 044770 332 M 332 (464)
Q Consensus 332 ~ 332 (464)
+
T Consensus 269 ~ 269 (308)
T 2ond_A 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-11 Score=105.87 Aligned_cols=217 Identities=11% Similarity=-0.023 Sum_probs=176.1
Q ss_pred ccHHHHHHHHHhCCCCCChhhHHHHHHHHHc-------cCCh-------hHHHHHHHHHHhCCCCC-cHhHHHHHHHHHH
Q 044770 147 KTIPNILRQMKADKVAPHVSTFHILMKIEAN-------DHNI-------EGLMKVYSDMKRSEVEP-NEVSYCILATAHA 211 (464)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~ 211 (464)
++|..+|++..... +.+...|..++..+.. .|++ ++|..+|++..+. +.| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 57788899888753 5667788888777753 5886 8999999999873 134 5568999999999
Q ss_pred hcChhhHHHHHHHHHHhccCCCC-hh-hHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhh-ccCChHHH
Q 044770 212 VARLYTVAETYVEALEKSMTGNN-WS-TLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFG-RIAQVSRA 288 (464)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a 288 (464)
+.|++++|..+|+++.+. .|+ .. +|..+...+.+.|+.++|..+|+......+.....|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999884 343 33 78999999999999999999999998866666656654444322 36999999
Q ss_pred HHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCc--cHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 289 EELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG-CKP--NAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++......|+.+.|..+++.+
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998743 3467889999999999999999999999999863 455 3567888888888999999999999999
Q ss_pred HHH
Q 044770 366 MKL 368 (464)
Q Consensus 366 ~~~ 368 (464)
++.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.48 E-value=6.1e-12 Score=101.68 Aligned_cols=171 Identities=12% Similarity=0.091 Sum_probs=113.4
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHH
Q 044770 164 HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243 (464)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (464)
+..+|..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|...+...... .+.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CchhHHHHHHHHH
Confidence 45566677777777777777777777766553 224556666777777777777777777776654 2334455555666
Q ss_pred HHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHH
Q 044770 244 LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKA 323 (464)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 323 (464)
.+...++++.+...+.......+.+...+..+...|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 66666667777766666666555556666677777777777777777777776632 33556677777777777777777
Q ss_pred HHHHHHHHhCCCCccH
Q 044770 324 SGLLKEMSMNGCKPNA 339 (464)
Q Consensus 324 ~~~~~~m~~~g~~p~~ 339 (464)
+..|++.++ +.|+.
T Consensus 161 ~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHH--TTHHH
T ss_pred HHHHHHHHh--CCccC
Confidence 777777766 34543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-12 Score=120.90 Aligned_cols=212 Identities=8% Similarity=-0.071 Sum_probs=142.6
Q ss_pred cHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCc-ccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 044770 110 VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR-KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188 (464)
Q Consensus 110 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (464)
.+++++..++..... .+.+...+..+...+...|++ ++|.+.|++..+.. +.+...|..+...|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456777777766554 234677788888888888888 88888888887754 455778888888888888888888888
Q ss_pred HHHHhCCCCCcHhHHHHHHHHHHhc---------ChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhh--------cCh
Q 044770 189 SDMKRSEVEPNEVSYCILATAHAVA---------RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL--------AKG 251 (464)
Q Consensus 189 ~~m~~~~~~p~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 251 (464)
++..+. .|+...+..+..++... |++++|+..+++..+.. +.+...+..+..++... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 888876 46667777888888887 88888888888877752 33456666666666666 566
Q ss_pred hhHHHHHHHhccCCC---CchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHH
Q 044770 252 KDLERIWATVQELPN---VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327 (464)
Q Consensus 252 ~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 327 (464)
++|...++......+ .+...|..+...|...|++++|...|++..+.. +.+...+..+...+...|++++|+..+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666665555333 444555555566666666666666666555422 223444555555555555555555433
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.8e-13 Score=117.55 Aligned_cols=135 Identities=16% Similarity=0.107 Sum_probs=77.4
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHc-------CCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhC------C
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVL-------GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD------K 160 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 160 (464)
+..++..+...+...|++++|+..|+++.+. ..+....++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456666666677777777777777666652 12223445566666666666666666666665542 1
Q ss_pred -CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC------CCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 161 -VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS------EVEP-NEVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 161 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
.+....++..+...+...|++++|...|++..+. +..| ....+..+...+...|++++|..+++++..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222345556666666666666666666665542 1112 233455556666666666666666666544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-12 Score=120.54 Aligned_cols=214 Identities=9% Similarity=-0.077 Sum_probs=125.8
Q ss_pred hHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcH-HHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHH
Q 044770 78 ISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVI-KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQ 155 (464)
Q Consensus 78 ~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 155 (464)
++++...++......| +...|..+...+...|++ ++|++.|++..+.. +.+...|..+...|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555555554444322 455566666666666666 66666666666543 22355566666666666666666666666
Q ss_pred HHhCCCCCChhhHHHHHHHHHcc---------CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhc--------ChhhH
Q 044770 156 MKADKVAPHVSTFHILMKIEAND---------HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVA--------RLYTV 218 (464)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------~~~~~ 218 (464)
..+. .|+...+..+...+... |++++|...|++..+.. +.+...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 6654 34455556666666666 66666666666665542 22355566666666666 66666
Q ss_pred HHHHHHHHHhccCC--CChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHH
Q 044770 219 AETYVEALEKSMTG--NNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEM 295 (464)
Q Consensus 219 a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 295 (464)
|+..|++..+.... .+...+..+..++...|++++|.+.++......+.+...+..+...+...|++++|.+.+..+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66666666554210 345566666666666666666666666666655555555666666666666666666655443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.8e-11 Score=107.45 Aligned_cols=229 Identities=11% Similarity=0.009 Sum_probs=145.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCC-CCc----HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCC-C-----ChhhHH
Q 044770 171 LMKIEANDHNIEGLMKVYSDMKRSEV-EPN----EVSYCILATAHAVARLYTVAETYVEALEKSMTG-N-----NWSTLD 239 (464)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 239 (464)
....+...|++++|...|++..+... .++ ..++..+...|...|+++.|...+++..+.... + ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455677888888888877764310 112 345666777777888888888877776543111 1 134556
Q ss_pred HHHHHHHhhcChhhHHHHHHHhcc----CC--CCchhhHHHHHHHhhccCChHHHHHHHHHHHhc----cccCChhhHHH
Q 044770 240 VLIILYGYLAKGKDLERIWATVQE----LP--NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV----KQLKATEQYNS 309 (464)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~ 309 (464)
.+..+|...|+++.|...++.... .+ .....++..+...|...|++++|...|++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 667777777777777777666544 11 112335667778888888888888888877651 22223566777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC---Ccc-HHHHHHHHHHHHhcCC---hHHHHHHHHHhHHHHhhhhhcCCCC-cH
Q 044770 310 VISVYCKNGFIDKASGLLKEMSMNGC---KPN-AITYRHLALGCFKSNL---VEEGFKALELGMKLITTKKVRSSTP-WL 381 (464)
Q Consensus 310 li~~~~~~~~~~~a~~~~~~m~~~g~---~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~p-~~ 381 (464)
+...+.+.|++++|...+++..+... .|. ...+..+...+...++ +.+|+.+++.. +..| ..
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----------~~~~~~~ 336 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----------NLHAYIE 336 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----------TCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----------CChhHHH
Confidence 88888888888888888888766321 122 2344444455566666 66666666543 2222 23
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 382 ETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
..+..+...|...|++++|...|++..+
T Consensus 337 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 337 ACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4556788888888888888888887764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.5e-13 Score=117.68 Aligned_cols=239 Identities=14% Similarity=0.108 Sum_probs=169.8
Q ss_pred chhhHHHHHHHhcCCCCcccHHHHHHHHHhC-------CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC------C
Q 044770 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKAD-------KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS------E 195 (464)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 195 (464)
+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4667888889999999999999999998873 22344567888999999999999999999988753 2
Q ss_pred C-CCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhcc------C-CCChhhHHHHHHHHHhhcChhhHHHHHHHhccC---
Q 044770 196 V-EPNEVSYCILATAHAVARLYTVAETYVEALEKSM------T-GNNWSTLDVLIILYGYLAKGKDLERIWATVQEL--- 264 (464)
Q Consensus 196 ~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 264 (464)
- .....++..+...+...|++++|...++++.+.. . +.....+..+...+...|++++|...++.....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 2235678888899999999999999999886642 1 223456788888999999999999999887663
Q ss_pred -----CCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcc-------ccCC-------hhhHHHHHHHHHhcCChhHHHH
Q 044770 265 -----PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK-------QLKA-------TEQYNSVISVYCKNGFIDKASG 325 (464)
Q Consensus 265 -----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~li~~~~~~~~~~~a~~ 325 (464)
.+.....+..+...|...|++++|...++++.+.. ..+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 33344568888999999999999999999887631 1111 1122223333445566667777
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 326 LLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 326 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
.+....... ..+..++..+...|...|++++|..+++.++++
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 777666531 234567888899999999999999999999654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-11 Score=97.73 Aligned_cols=167 Identities=16% Similarity=0.057 Sum_probs=148.1
Q ss_pred cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHH
Q 044770 199 NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEA 278 (464)
Q Consensus 199 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (464)
+...|..+...+.+.|++++|+..|++..+.. +.+..++..+..++...|+++.|...+.......+.....+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 67789999999999999999999999998863 45678899999999999999999999999988777788888899999
Q ss_pred hhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHH
Q 044770 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEG 358 (464)
Q Consensus 279 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 358 (464)
+...++++.|...+...... .+.+...+..+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998874 34467789999999999999999999999999853 22677889999999999999999
Q ss_pred HHHHHHhHHH
Q 044770 359 FKALELGMKL 368 (464)
Q Consensus 359 ~~~~~~~~~~ 368 (464)
+..|+++++.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999999643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.43 E-value=7e-10 Score=106.74 Aligned_cols=392 Identities=10% Similarity=-0.014 Sum_probs=262.2
Q ss_pred HHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCc---HHHHHHHH
Q 044770 43 KRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGV---IKLSLEYM 118 (464)
Q Consensus 43 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~---~~~a~~~~ 118 (464)
.+.+..|+..+... +-|...|..++..+.+.+.++.+..+|+++....| ....|...+..-.+.+. ++.+..+|
T Consensus 49 ~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 34455556665544 45889999999999999999999999999988855 67789999998888898 99999999
Q ss_pred HHHHHcC-CCCchhhHHHHHHHhcCCCCc--------ccHHHHHHHHHh-CCC-CCC-hhhHHHHHHHHH---------c
Q 044770 119 KKMRVLG-HSISYLVFNRLIILNSSPGRR--------KTIPNILRQMKA-DKV-APH-VSTFHILMKIEA---------N 177 (464)
Q Consensus 119 ~~m~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~---------~ 177 (464)
++..... .+|++..|...+....+.++. +.+.++|+..+. .|. .++ ...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9999863 147888888888766554443 334578887665 465 454 467877776543 2
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHhHHHH---HHHHH----------HhcChhhHHHHHHHHHHhc--cCC---CC-----
Q 044770 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCI---LATAH----------AVARLYTVAETYVEALEKS--MTG---NN----- 234 (464)
Q Consensus 178 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~---li~~~----------~~~~~~~~a~~~~~~~~~~--~~~---~~----- 234 (464)
.++++.+..+|+.........-..+|.. +.... -...+++.|...+.++... ++. |.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 4457889999999885322212233322 21111 0112334455555543221 110 10
Q ss_pred ---------------hhhHHHHHHHHHhhc-------ChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHH-HH
Q 044770 235 ---------------WSTLDVLIILYGYLA-------KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE-EL 291 (464)
Q Consensus 235 ---------------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~ 291 (464)
...|...+..--..+ ..+.+..+|++.....+.....|...+..+...|+.++|. .+
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 022333333222221 1123456777777766667788888888888899999996 99
Q ss_pred HHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC---------Ccc------------HHHHHHHHHHHH
Q 044770 292 WLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC---------KPN------------AITYRHLALGCF 350 (464)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~ll~~~~ 350 (464)
|++... ..+.+...|-..+...-+.|+++.|..+|+.+++... .|+ ...|...+....
T Consensus 367 l~rAi~-~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 367 LKLGQQ-CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 999987 4555666788888888999999999999999886410 132 235777777777
Q ss_pred hcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhc-CChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHc
Q 044770 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEK-GDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKA 429 (464)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 429 (464)
+.|+.+.|..+|+.+++. .....+.... ..+..-.+. ++.+.|..+|+...+. ++-+...|...+.-....
T Consensus 446 R~~~l~~AR~vf~~A~~~-----~~~~~~~lyi--~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~ 517 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRL-----KKLVTPDIYL--ENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYV 517 (679)
T ss_dssp HHHCHHHHHHHHHHHHHT-----GGGSCTHHHH--HHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh-----cCCCChHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhC
Confidence 889999999999999531 0122333333 333333344 4599999999999876 334566788888888888
Q ss_pred CCC--hhHHHHHHHhCCC
Q 044770 430 KIN--DPNLLRRMILGGA 445 (464)
Q Consensus 430 g~~--a~~~~~~m~~~~~ 445 (464)
|+. |..+|++......
T Consensus 518 ~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 518 NEESQVKSLFESSIDKIS 535 (679)
T ss_dssp TCHHHHHHHHHHHTTTSS
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 874 8899999887643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.9e-11 Score=107.86 Aligned_cols=313 Identities=10% Similarity=-0.057 Sum_probs=153.5
Q ss_pred ChhchHHHHHHH--HhhcchHHHHHHHHHHHHcCC-CCCC--chhHHHHHHH--HHhhcChHHHH---------HHhhhc
Q 044770 25 HRGEIFHSINRL--RKLQLNKRALEVMEWVIRERP-YRPK--ELDYSYLLEF--TIKNHGISQGE---------KLFCCI 88 (464)
Q Consensus 25 ~~~~~~~~l~~~--~~~~~~~~A~~~~~~~~~~~~-~~~~--~~~~~~l~~~--~~~~g~~~~a~---------~~~~~~ 88 (464)
+...-..+-..+ ...+++++|.++++.+.+... ...+ ...|-.++.. ..-.+.++.+. +.++.+
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 333334444444 678888999998888765321 1112 2222222221 11112222222 444443
Q ss_pred CCC-CC--ch---hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCC-CC----chhhHHHHHHHhcCCCCcccHHHHHHHHH
Q 044770 89 PKD-YQ--NE---LLYNNLVIACLDKGVIKLSLEYMKKMRVLGH-SI----SYLVFNRLIILNSSPGRRKTIPNILRQMK 157 (464)
Q Consensus 89 ~~~-~~--~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (464)
... .+ +. ..|......+...|++++|+..|++..+... .+ ...++..+...|...|+++.|...+++..
T Consensus 89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 221 01 11 1222334445666777777777777665311 11 13445556666666666666666666654
Q ss_pred hC----C-CCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHhC----CCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHH
Q 044770 158 AD----K-VAP-HVSTFHILMKIEANDHNIEGLMKVYSDMKRS----EVEP-NEVSYCILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 158 ~~----~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
+. + ..+ ...+++.+...|...|++++|.+.|++..+. +..+ ...++..+..+|...|++++|...+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 31 0 000 1234555556666666666666666554431 1000 1233444555555555555555555554
Q ss_pred HhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccc----cC
Q 044770 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ----LK 302 (464)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~ 302 (464)
....... ..+....++..+...|.+.|++++|...+++..+... +.
T Consensus 249 l~~~~~~------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 298 (378)
T 3q15_A 249 AKVSREK------------------------------VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298 (378)
T ss_dssp HHHHHHH------------------------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC
T ss_pred HHHHHhh------------------------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4310000 2222233455566666666666666666666554221 11
Q ss_pred ChhhHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHh
Q 044770 303 ATEQYNSVISVYCKNGF---IDKASGLLKEMSMNGCKPN-AITYRHLALGCFKSNLVEEGFKALELGMKLIT 370 (464)
Q Consensus 303 ~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 370 (464)
....+..+...+...++ +.+|+..+++ .+..|+ ...+..+...|...|++++|...|+.+++...
T Consensus 299 ~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 299 YKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 12234444444555555 5556555554 222232 23455666667777888888877777766544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-10 Score=103.84 Aligned_cols=277 Identities=10% Similarity=-0.018 Sum_probs=152.1
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHHcCCCCchh----hHHHHHHHhcCCCCcccHHHHHHHHHhCCC-CCCh----hhHHH
Q 044770 100 NLVIACLDKGVIKLSLEYMKKMRVLGHSISYL----VFNRLIILNSSPGRRKTIPNILRQMKADKV-APHV----STFHI 170 (464)
Q Consensus 100 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ 170 (464)
.....+...|++++|...+++........+.. +++.+...+...|++++|...+++.....- .++. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445556677777777777766542111111 233444445555666666655555543110 0111 12333
Q ss_pred HHHHHHccCChhHHHHHHHHHHhC----CCC--Cc-HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHH
Q 044770 171 LMKIEANDHNIEGLMKVYSDMKRS----EVE--PN-EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243 (464)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~m~~~----~~~--p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (464)
+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++.........
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------- 169 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ--------- 169 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC---------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC---------
Confidence 444455555555555555554321 111 11 22333344444555555555555554433211100
Q ss_pred HHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCCh-hhHH-----HHHHHHHhc
Q 044770 244 LYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKAT-EQYN-----SVISVYCKN 317 (464)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~ 317 (464)
+......+..+...+...|++++|...+++.......++. ..+. ..+..+...
T Consensus 170 ---------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (373)
T 1hz4_A 170 ---------------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 228 (373)
T ss_dssp ---------------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHC
Confidence 0011224556677777888888888888877653222211 1222 223446788
Q ss_pred CChhHHHHHHHHHHhCCCCc---cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcH-HHHHHHHHHHHh
Q 044770 318 GFIDKASGLLKEMSMNGCKP---NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL-ETTLSIIEIFAE 393 (464)
Q Consensus 318 ~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~ 393 (464)
|++++|...+++.......+ ....+..+...+...|++++|...++.++..... .+..++. ..+..+..++..
T Consensus 229 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~---~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 229 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS---LRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CcchhhHHHHHHHHHHHHHH
Confidence 99999999888877643221 1234566777888889999999999988654332 2322233 356677888889
Q ss_pred cCChhhHHHHHHHHHH
Q 044770 394 KGDVGNAENLFEELKK 409 (464)
Q Consensus 394 ~g~~~~A~~~~~~m~~ 409 (464)
.|+.++|...+++...
T Consensus 306 ~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 306 AGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 9999999999988765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=9.3e-11 Score=94.55 Aligned_cols=164 Identities=10% Similarity=-0.070 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhc
Q 044770 63 LDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNS 141 (464)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 141 (464)
..+..+...+...|++++|...|+++... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44566777788888888888888888776 3356778888888888888888888888887763 345667777777888
Q ss_pred CCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHH
Q 044770 142 SPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAET 221 (464)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 221 (464)
..|++++|...++.+.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888877654 4566777777888888888888888888877653 3356677777888888888888888
Q ss_pred HHHHHHhc
Q 044770 222 YVEALEKS 229 (464)
Q Consensus 222 ~~~~~~~~ 229 (464)
.+++..+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88877654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=7.2e-10 Score=100.48 Aligned_cols=276 Identities=11% Similarity=0.010 Sum_probs=172.7
Q ss_pred HHHHHHHHHhhcChHHHHHHhhhcCCCCC--ch----hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCC-Cc----hhhH
Q 044770 65 YSYLLEFTIKNHGISQGEKLFCCIPKDYQ--NE----LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHS-IS----YLVF 133 (464)
Q Consensus 65 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~ 133 (464)
.......+...|++++|...+++.....| +. .+++.+...+...|++++|...+++....... ++ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34455567789999999999887644422 11 25677778899999999999999988763211 12 2335
Q ss_pred HHHHHHhcCCCCcccHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCC--C--cHhH
Q 044770 134 NRLIILNSSPGRRKTIPNILRQMKAD----KVA--P-HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE--P--NEVS 202 (464)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~~ 202 (464)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777889999999999999998752 222 2 2345667888899999999999999998754211 1 2345
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHhccCCCCh-hhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc
Q 044770 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNW-STLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281 (464)
Q Consensus 203 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (464)
+..+...+...|++++|...+++.......++. ..+.... ....+..+..
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~ 227 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA-----------------------------NKVRVIYWQM 227 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH-----------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHH-----------------------------HHHHHHHHHH
Confidence 777778888999999999999988654322221 1111110 0011122334
Q ss_pred cCChHHHHHHHHHHHhccccC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCccH-HHHHHHHHHHHhcC
Q 044770 282 IAQVSRAEELWLEMQSVKQLK---ATEQYNSVISVYCKNGFIDKASGLLKEMSM----NGCKPNA-ITYRHLALGCFKSN 353 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~-~~~~~ll~~~~~~~ 353 (464)
.|++++|...++........+ ....+..+...+...|++++|...+++... .|..++. ..+..+..++...|
T Consensus 228 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 307 (373)
T 1hz4_A 228 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 307 (373)
T ss_dssp TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhC
Confidence 444444444444443321110 011344555666666777777776666543 2222222 24455566677778
Q ss_pred ChHHHHHHHHHhHHHH
Q 044770 354 LVEEGFKALELGMKLI 369 (464)
Q Consensus 354 ~~~~a~~~~~~~~~~~ 369 (464)
+.++|...++.++...
T Consensus 308 ~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 308 RKSDAQRVLLDALKLA 323 (373)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 8888888888776543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-10 Score=92.50 Aligned_cols=163 Identities=9% Similarity=-0.044 Sum_probs=79.3
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (464)
.+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~--------- 78 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKV--------- 78 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHH---------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHH---------
Confidence 34445555555666666666665554432 223445555555555566666666655555443 1222333
Q ss_pred hhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHH
Q 044770 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326 (464)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 326 (464)
+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|...
T Consensus 79 -------------------------~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 79 -------------------------ATVLGLTYVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp -------------------------HHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------------HHHHHHHHHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 333444444444444444444444432 122344444455555555555555555
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHH
Q 044770 327 LKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 327 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 367 (464)
++++.+.. +.+...+..+...+...|++++|...++.+++
T Consensus 133 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55554432 12344444555555555555555555555544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-11 Score=104.03 Aligned_cols=238 Identities=13% Similarity=0.083 Sum_probs=133.7
Q ss_pred cCCCCcccHHHHHHHHHhC-------CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC------CCCC-cHhHHHHH
Q 044770 141 SSPGRRKTIPNILRQMKAD-------KVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS------EVEP-NEVSYCIL 206 (464)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l 206 (464)
...|++++|...|++..+. ..+....++..+...+...|++++|...|++..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4566777777777766541 11223445666677777777777777777766543 1112 24456666
Q ss_pred HHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc-CCCCchhhHHHHHHHhhccCCh
Q 044770 207 ATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE-LPNVRSKSYVLAIEAFGRIAQV 285 (464)
Q Consensus 207 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 285 (464)
..++...|++++|...+++...... .... ..+.....+..+...|...|++
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~ 143 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIRE----------------------------KVLGKFHPDVAKQLNNLALLCQNQGKA 143 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHH----------------------------HHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHH----------------------------HHcCCCChHHHHHHHHHHHHHHHcCCH
Confidence 6666777777777776666544310 0000 0112233466677777777888
Q ss_pred HHHHHHHHHHHhc------c-ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCccHH-HHHHHHHHHH
Q 044770 286 SRAEELWLEMQSV------K-QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN-------GCKPNAI-TYRHLALGCF 350 (464)
Q Consensus 286 ~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~-~~~~ll~~~~ 350 (464)
++|...|++..+. . .+....++..+...|...|++++|...+++..+. ...+... .+..+.....
T Consensus 144 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (283)
T 3edt_B 144 EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREE 223 (283)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHh
Confidence 8888877777653 1 1223556778888888888888888888887652 1222222 2222222222
Q ss_pred hcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 351 KSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
..+....+.. +..+..... ......| ...++..+...|...|++++|...|++..+
T Consensus 224 ~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 224 SKDKRRDSAP-YGEYGSWYK--ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp TTCCCCC---------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCchhHHHH-HHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222222222 222211100 0011223 345688899999999999999999998775
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.9e-10 Score=108.55 Aligned_cols=167 Identities=11% Similarity=-0.022 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhh
Q 044770 201 VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFG 280 (464)
Q Consensus 201 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (464)
.+|+.+...+.+.|++++|+..|++..+. .+-+..++..+..++.+.|++++|+..+++..+..+.....|..+..+|.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l-~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34444444444555555555555444443 12233444445555555555555555555544444444555666667777
Q ss_pred ccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCChHHHH
Q 044770 281 RIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLVEEGF 359 (464)
Q Consensus 281 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~ 359 (464)
..|++++|.+.|++..+.. +-+...|+.+..+|...|++++|+..|++.++. .| +...+..+...+...|++++|.
T Consensus 89 ~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHH
Confidence 7777777777777766632 224566777777777777777777777777763 34 3566677777777777777777
Q ss_pred HHHHHhHHHHhh
Q 044770 360 KALELGMKLITT 371 (464)
Q Consensus 360 ~~~~~~~~~~~~ 371 (464)
+.+++++++...
T Consensus 166 ~~~~kal~l~~~ 177 (723)
T 4gyw_A 166 ERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhChh
Confidence 777777665443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.8e-10 Score=93.40 Aligned_cols=194 Identities=8% Similarity=-0.118 Sum_probs=116.5
Q ss_pred chhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 044770 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208 (464)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 208 (464)
|+..+......+...|++++|...|+...+..-+++...+..+..++...|++++|+..|++..+.. +.+...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4566777777777788888888888877775522666666667777778888888888888777653 224556777777
Q ss_pred HHHhcChhhHHHHHHHHHHhccCCCCh-------hhHHHHHHHHHhhcChhhHHHHHHHhccCCCC--chhhHHHHHHHh
Q 044770 209 AHAVARLYTVAETYVEALEKSMTGNNW-------STLDVLIILYGYLAKGKDLERIWATVQELPNV--RSKSYVLAIEAF 279 (464)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~ 279 (464)
++...|++++|...+++..+.. +.+. ..+..+...+...|++++|...++......+. ....+..+...|
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 7777888888888887776652 2233 33555555666666666666666666655444 445555555555
Q ss_pred hccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 280 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
...| ...++.+...+ ..+...|.... ....+.+++|+..|++..+
T Consensus 164 ~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 4333 22333333321 11222232222 2223445666666666655
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.24 E-value=6.9e-11 Score=102.48 Aligned_cols=125 Identities=11% Similarity=-0.031 Sum_probs=97.8
Q ss_pred HHhhCcHHHHHHHHHHHHHc-------CCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhC------CC-CCChhhHHH
Q 044770 105 CLDKGVIKLSLEYMKKMRVL-------GHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD------KV-APHVSTFHI 170 (464)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 170 (464)
....|++++|+..|++..+. ..+....++..+...+...|++++|...+++..+. +- +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 45678999999999988762 11234667888999999999999999999998764 21 233567888
Q ss_pred HHHHHHccCChhHHHHHHHHHHhC------CC-CCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhc
Q 044770 171 LMKIEANDHNIEGLMKVYSDMKRS------EV-EPNEVSYCILATAHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~m~~~------~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 229 (464)
+...+...|++++|...|++..+. .. +....++..+...+...|++++|...+++..+.
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998754 11 223567788888899999999999999887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-09 Score=91.77 Aligned_cols=195 Identities=13% Similarity=0.094 Sum_probs=144.9
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHH
Q 044770 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242 (464)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (464)
.|...+......+...|++++|...|++..+....++...+..+..++...|++++|+..+++..+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45677888888899999999999999998876543677777778888999999999999999988753 33567788888
Q ss_pred HHHHhhcChhhHHHHHHHhccCCCCch-------hhHHHHHHHhhccCChHHHHHHHHHHHhccccC--ChhhHHHHHHH
Q 044770 243 ILYGYLAKGKDLERIWATVQELPNVRS-------KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK--ATEQYNSVISV 313 (464)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~ 313 (464)
.++...|++++|...++......+.+. ..|..+...+...|++++|...|++..+.. +. +...|..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence 999999999999999998888555555 457778888888999999999999988742 22 34567777777
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHH
Q 044770 314 YCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 314 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 367 (464)
|...| ...++++...+. .+...|.... ....+.+++|...++++++
T Consensus 163 ~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 75544 344555555432 2344444333 2344668899999998853
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.8e-10 Score=109.86 Aligned_cols=165 Identities=8% Similarity=-0.025 Sum_probs=102.6
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHH
Q 044770 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244 (464)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (464)
...|+.|...+.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|+..|++..+.. +.+...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4455566666666666666666666655542 1134555666666666666666666666665542 2234556666666
Q ss_pred HHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHH
Q 044770 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKAS 324 (464)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 324 (464)
+...|++++|.+.+++..+..+.+...+..+...|...|++++|...|++..+.. +-+...|..+..+|...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHH
Confidence 6666666666666666665555555667777777777777777777777777632 224566777777777777777777
Q ss_pred HHHHHHHh
Q 044770 325 GLLKEMSM 332 (464)
Q Consensus 325 ~~~~~m~~ 332 (464)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=8.8e-10 Score=96.07 Aligned_cols=189 Identities=11% Similarity=-0.067 Sum_probs=113.0
Q ss_pred HHccCChhHHHHHHHHHHhC----CCCCc-HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCC-C----hhhHHHHHHH
Q 044770 175 EANDHNIEGLMKVYSDMKRS----EVEPN-EVSYCILATAHAVARLYTVAETYVEALEKSMTGN-N----WSTLDVLIIL 244 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~ 244 (464)
|...|++++|...|++..+. |-.++ ..+|+.+..+|.+.|++++|+..+++........ + ..++..+..+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555544321 11111 3345555555666666666666555554321110 1 2345556666
Q ss_pred HHhh-cChhhHHHHHHHhccCCC----C--chhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChh------hHHHHH
Q 044770 245 YGYL-AKGKDLERIWATVQELPN----V--RSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATE------QYNSVI 311 (464)
Q Consensus 245 ~~~~-~~~~~a~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~li 311 (464)
|... |++++|...++......+ . ...++..+...+.+.|++++|...|++..+........ .|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 6664 777777666666544111 1 12357788889999999999999999988754322211 567788
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCccHH------HHHHHHHHHH--hcCChHHHHHHHHHh
Q 044770 312 SVYCKNGFIDKASGLLKEMSMNGCKPNAI------TYRHLALGCF--KSNLVEEGFKALELG 365 (464)
Q Consensus 312 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------~~~~ll~~~~--~~~~~~~a~~~~~~~ 365 (464)
.++...|++++|...|++..+ +.|+.. .+..++.++. ..+++++|+..|+.+
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 889999999999999999877 344321 3444555554 446788888888776
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-08 Score=85.96 Aligned_cols=249 Identities=13% Similarity=0.080 Sum_probs=163.2
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChh
Q 044770 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252 (464)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (464)
+-..-.|++..++.-...+.. .. +...-.-+.+++...|++... ....|....+..+...+ . .
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~--~~-~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~----~ 83 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK--VT-DNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-D----T 83 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC--CC-CHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-T----T
T ss_pred HHHHHhhHHHHHHHHHHhcCc--cc-hHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-c----c
Confidence 334456777777663322211 12 222333445667666766531 11223322333333332 2 1
Q ss_pred hHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccc-cCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 253 DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ-LKATEQYNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
.+...++.+......+..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 84 ~a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 84 KNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp TCCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 256777776665444455566888899999999999999999876543 2366778889999999999999999999998
Q ss_pred hCCCCc-----cHHHHHHHHHH--HHhcC--ChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHH
Q 044770 332 MNGCKP-----NAITYRHLALG--CFKSN--LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAEN 402 (464)
Q Consensus 332 ~~g~~p-----~~~~~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 402 (464)
+ ..| +..+...+..+ ....| ++++|..+|+++. ...|+..+...++.++.+.|++++|.+
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~---------~~~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELS---------QTFPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH---------TTSCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH---------HhCCCcccHHHHHHHHHHcCCHHHHHH
Confidence 8 466 35666666666 33334 8999999999982 334553333455558999999999999
Q ss_pred HHHHHHHcC-----C----CCcHHHHHHHHHHHHHcCCChhHHHHHHHhCCCCCCHHH
Q 044770 403 LFEELKKAN-----Y----TKYTFVYNTLIKAYVKAKINDPNLLRRMILGGARPDAET 451 (464)
Q Consensus 403 ~~~~m~~~~-----~----~p~~~~~~~li~~~~~~g~~a~~~~~~m~~~~~~p~~~t 451 (464)
.++.+.+.- - +.|..+.-.+|......|++|.+++.++++. .|+..-
T Consensus 233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a~~l~~qL~~~--~P~hp~ 288 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVKL--DHEHAF 288 (310)
T ss_dssp HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTCTTHHHHHHHHHT--TCCCHH
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhChHHHHHHHHHHHh--CCCChH
Confidence 999776531 0 2345577566666666788999999999985 465443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-09 Score=93.33 Aligned_cols=233 Identities=9% Similarity=0.027 Sum_probs=164.3
Q ss_pred ccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc--C-ChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHH
Q 044770 147 KTIPNILRQMKADKVAPHVSTFHILMKIEAND--H-NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYV 223 (464)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 223 (464)
.+|.+++.+..+.- ++....| .+ + +. + ++++|...|++. ...|...|++++|...|
T Consensus 2 ~~a~~~~~~a~k~~-~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 2 SDPVELLKRAEKKG-VPSSGFM-KL---F-SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CCHHHHHHHHHHHS-SCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHH
T ss_pred CcHHHHHHHHHHHh-CcCCCcc-hh---c-CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 46777887776642 3322223 22 2 32 2 488888888876 34577899999999999
Q ss_pred HHHHhc----cCCCC-hhhHHHHHHHHHhhcChhhHHHHHHHhccC----CCC--chhhHHHHHHHhhcc-CChHHHHHH
Q 044770 224 EALEKS----MTGNN-WSTLDVLIILYGYLAKGKDLERIWATVQEL----PNV--RSKSYVLAIEAFGRI-AQVSRAEEL 291 (464)
Q Consensus 224 ~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~-g~~~~a~~~ 291 (464)
.+.... |.+++ ..+++.+..+|...|++++|...++..... ... ...++..+...|... |++++|...
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 987554 22222 468889999999999999999999887651 111 134688899999996 999999999
Q ss_pred HHHHHhccccC-C----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH------HHHHHHHHHHHhcCChHHHHH
Q 044770 292 WLEMQSVKQLK-A----TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA------ITYRHLALGCFKSNLVEEGFK 360 (464)
Q Consensus 292 ~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~ 360 (464)
|++..+..... + ..+++.+...+.+.|++++|+..|++..+....... ..|..+..++...|++++|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99887632211 1 356888999999999999999999999985432221 256777788899999999999
Q ss_pred HHHHhHHHHhhhhhcCCCCc------HHHHHHHHHHHH--hcCChhhHHHHHHHHHH
Q 044770 361 ALELGMKLITTKKVRSSTPW------LETTLSIIEIFA--EKGDVGNAENLFEELKK 409 (464)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~p~------~~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 409 (464)
.++.+++ +.|+ ...+..++.++. ..+++++|...|+.+..
T Consensus 221 ~~~~al~---------l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 221 TLQEGQS---------EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHGGGC---------C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHh---------hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 9999853 3332 223445566664 34567777777766654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.18 E-value=5.1e-09 Score=89.52 Aligned_cols=143 Identities=11% Similarity=0.039 Sum_probs=60.6
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCC-CCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 044770 114 SLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV-APHVSTFHILMKIEANDHNIEGLMKVYSDMK 192 (464)
Q Consensus 114 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 192 (464)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444332 22333333444444455555555555555443321 1233344444455555555555555555554
Q ss_pred hCCCCC-----cHhHHHHHHHHHH--hcC--hhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHh
Q 044770 193 RSEVEP-----NEVSYCILATAHA--VAR--LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATV 261 (464)
Q Consensus 193 ~~~~~p-----~~~~~~~li~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (464)
+. .| +..+...++.++. ..| ++.+|..+|+++.+. .|+..+...++.++...|++++|++.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 33 1333333333311 112 455555555554332 122222223333445555555555555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-07 Score=87.68 Aligned_cols=201 Identities=9% Similarity=0.013 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 218 VAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
.+..+|+++... .+.++..|...+..+...|+.+.|..++++.... +.+...+.. |+...+.++. ++.+.+
T Consensus 197 Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~----y~~~~e~~~~---~~~l~~ 267 (493)
T 2uy1_A 197 RMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLY----YGLVMDEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHH----HHHHTTCTHH---HHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHH----HHhhcchhHH---HHHHHH
Confidence 455666666654 3344566666666666777777777777766665 333322222 2111111111 222221
Q ss_pred cc------------ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHH-hcCChHHHHHHHHH
Q 044770 298 VK------------QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF-KSNLVEEGFKALEL 364 (464)
Q Consensus 298 ~~------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~ 364 (464)
.- .......|...+..+.+.+..+.|..+|... .. ..++...|......-. ..++.+.|..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 10 0112245666677777778899999999988 32 1224444432222212 23468999999999
Q ss_pred hHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC--hhHHHHHHHh
Q 044770 365 GMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN--DPNLLRRMIL 442 (464)
Q Consensus 365 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--a~~~~~~m~~ 442 (464)
+++ ..+-. ...+...++...+.|+.+.|..+|+++. .....|...+.--...|+. +.++++++..
T Consensus 346 al~------~~~~~--~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLL------KHPDS--TLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHH------HCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHH------HCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 853 22222 3345567777788899999999998873 2567888888877777874 5566766653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=5e-09 Score=79.20 Aligned_cols=129 Identities=14% Similarity=0.074 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 044770 97 LYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEA 176 (464)
Q Consensus 97 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (464)
.|..+...+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34455555555666666666666555542 2234445555555555555666666555555433 334445555556666
Q ss_pred ccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 177 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666655432 22344555555666666666666666665544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.9e-09 Score=88.81 Aligned_cols=186 Identities=10% Similarity=-0.051 Sum_probs=118.8
Q ss_pred chhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCC---hhhHHHHHHHHHccCChhHHHHHHHHHHhCCC-CC-cHhHH
Q 044770 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH---VSTFHILMKIEANDHNIEGLMKVYSDMKRSEV-EP-NEVSY 203 (464)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p-~~~~~ 203 (464)
+...+-.+...+.+.|++++|...|+.+.+.. +.+ ...+..+..++.+.|++++|...|++..+... .| ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45556666667777888888888888877653 223 45666777778888888888888888776521 11 23455
Q ss_pred HHHHHHHHh--------cChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHH
Q 044770 204 CILATAHAV--------ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLA 275 (464)
Q Consensus 204 ~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 275 (464)
..+..++.. .|++++|...|+++.+.. +.+......+.......+.. ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~-----------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKL-----------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHH-----------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHH-----------------HHHHHHH
Confidence 666666777 778888888888776652 12222222211110000000 0114567
Q ss_pred HHHhhccCChHHHHHHHHHHHhccccC--ChhhHHHHHHHHHhc----------CChhHHHHHHHHHHhC
Q 044770 276 IEAFGRIAQVSRAEELWLEMQSVKQLK--ATEQYNSVISVYCKN----------GFIDKASGLLKEMSMN 333 (464)
Q Consensus 276 ~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~ 333 (464)
...|.+.|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 788888999999999999888743221 234677777778765 8889999999998874
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.9e-09 Score=89.65 Aligned_cols=173 Identities=13% Similarity=0.042 Sum_probs=83.8
Q ss_pred HHHHhhcCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCc
Q 044770 15 QSWMREGFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQN 94 (464)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 94 (464)
..+...-.|.+...+..+...+.+.|++++|+..|+.+.+.. +-+...+..+...+...|++++|...++++....|+
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~ 183 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD 183 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence 333333344444555555555566666666666666655532 223345555555666666666666666665554333
Q ss_pred hhHH-HHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCC-CChhhHHHHH
Q 044770 95 ELLY-NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVA-PHVSTFHILM 172 (464)
Q Consensus 95 ~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 172 (464)
.... ......+...++.++|+..+++..... +.+...+..+...+...|++++|...|.++.+.... .+...+..++
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 2211 112222344444555555555555432 223444555555555555555555555555443200 1133444455
Q ss_pred HHHHccCChhHHHHHHHH
Q 044770 173 KIEANDHNIEGLMKVYSD 190 (464)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~ 190 (464)
..+...|+.++|...|++
T Consensus 263 ~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 263 EILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHCTTCHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHH
Confidence 555555555555544443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-08 Score=77.35 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=59.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHh
Q 044770 168 FHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247 (464)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (464)
|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|..+++++...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------ 64 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------------------ 64 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------------
Confidence 3444445555555555555555544332 123334444444444455555555555444433
Q ss_pred hcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHH
Q 044770 248 LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLL 327 (464)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 327 (464)
.+.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|...+
T Consensus 65 -----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 65 -----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp -----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred -----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 22222233444444455555555555555544421 223344445555555555555555555
Q ss_pred HHHHh
Q 044770 328 KEMSM 332 (464)
Q Consensus 328 ~~m~~ 332 (464)
+++.+
T Consensus 127 ~~~~~ 131 (136)
T 2fo7_A 127 QKALE 131 (136)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 55444
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-08 Score=86.43 Aligned_cols=185 Identities=6% Similarity=-0.096 Sum_probs=121.6
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc----HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCC--CChh
Q 044770 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN----EVSYCILATAHAVARLYTVAETYVEALEKSMTG--NNWS 236 (464)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ 236 (464)
.+...+..+...+.+.|++++|...|+++.+.. |+ ...+..+..++.+.|++++|...|++..+.... ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 445566667777888888888888888887753 32 456777778888888888888888888775321 1234
Q ss_pred hHHHHHHHHHh--------hcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHH
Q 044770 237 TLDVLIILYGY--------LAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN 308 (464)
Q Consensus 237 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 308 (464)
.+..+..++.. .|++++|...++.+....+.+......+. .+..+... -...+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~--------------~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ--------------KIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHH--------------HHHHHHHH----HHHHHH
Confidence 45556666666 66677777766666553333332221111 11111110 011246
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCc--cHHHHHHHHHHHHhc----------CChHHHHHHHHHhHH
Q 044770 309 SVISVYCKNGFIDKASGLLKEMSMNGCKP--NAITYRHLALGCFKS----------NLVEEGFKALELGMK 367 (464)
Q Consensus 309 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~ 367 (464)
.+...|...|++++|+..|+++.+..... ....+..+..++... |++++|...++.+++
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 67888999999999999999998843211 245677777777766 889999999999953
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.9e-09 Score=82.83 Aligned_cols=160 Identities=6% Similarity=-0.084 Sum_probs=87.0
Q ss_pred HHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHH-hcC
Q 044770 65 YSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL-NSS 142 (464)
Q Consensus 65 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~ 142 (464)
+..+...+...|++++|...|++.... +.+...+..+...+...|++++|+..|++..... |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 344445555566666666666655554 2244555555666666666666666665554432 222222211111 111
Q ss_pred CCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-cHhHHHHHHHHHHhcChhhHHHH
Q 044770 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEP-NEVSYCILATAHAVARLYTVAET 221 (464)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~ 221 (464)
.++...|...+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 122234566666665543 3345666666777777777777777777776653222 23456666667777777777777
Q ss_pred HHHHHH
Q 044770 222 YVEALE 227 (464)
Q Consensus 222 ~~~~~~ 227 (464)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-08 Score=82.64 Aligned_cols=133 Identities=17% Similarity=0.089 Sum_probs=85.1
Q ss_pred HHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCC-
Q 044770 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQ- 284 (464)
Q Consensus 206 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 284 (464)
+..++.+.|++++|+..|++..+. .+.+...+..+..++...|++++|...++.+....+.+...+..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK-APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 666777777777777777777665 234566777777777777777777777777777666666677777777655443
Q ss_pred -hHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHH
Q 044770 285 -VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR 343 (464)
Q Consensus 285 -~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 343 (464)
.+.+...+..... ..|....+.....++...|++++|...|++.++ +.|+.....
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~ 194 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence 3344555555443 122222344455566677888888888888887 566654433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-08 Score=81.88 Aligned_cols=136 Identities=10% Similarity=-0.045 Sum_probs=103.0
Q ss_pred HHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcC
Q 044770 239 DVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNG 318 (464)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 318 (464)
..+..++...|++++|...++......+.+...+..+...|...|++++|...|++..+.. +.+...|..+...|...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 3478889999999999999999999888888899999999999999999999999999843 346778888888887665
Q ss_pred C--hhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHH
Q 044770 319 F--IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLS 386 (464)
Q Consensus 319 ~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 386 (464)
. ...+...++.... ..|....+.....++...|++++|+..|+++ ....|+......
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~a---------l~l~P~~~~~~~ 195 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKV---------ILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH---------TTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHH---------HHhCCCHHHHHH
Confidence 4 3445556655542 2333334444555667789999999999999 456777554333
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.5e-09 Score=101.22 Aligned_cols=172 Identities=8% Similarity=-0.049 Sum_probs=126.1
Q ss_pred HhhcchHHHHHHHHHHH--------HcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHh
Q 044770 37 RKLQLNKRALEVMEWVI--------RERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLD 107 (464)
Q Consensus 37 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~ 107 (464)
...|++++|++.++... +.. +.+...+..+...+...|++++|...|++..+. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 67788888888888887 321 345567777788888888888888888887766 3466788888888888
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHH
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV 187 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 187 (464)
.|++++|+..|++..+.. +-+...+..+..++.+.|++++ ...|++..+.. +.+...|..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888888764 3356777788888888888888 88888887754 45667778888888888888888888
Q ss_pred HHHHHhCCCCCc-HhHHHHHHHHHHhcCh
Q 044770 188 YSDMKRSEVEPN-EVSYCILATAHAVARL 215 (464)
Q Consensus 188 ~~~m~~~~~~p~-~~~~~~li~~~~~~~~ 215 (464)
|++..+. .|+ ...+..+..++...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 8887655 344 4556666666554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-06 Score=82.19 Aligned_cols=358 Identities=8% Similarity=-0.057 Sum_probs=216.0
Q ss_pred hhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcC-hHHHHHHhhhcCCC----CCchhHHHH
Q 044770 26 RGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHG-ISQGEKLFCCIPKD----YQNELLYNN 100 (464)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~----~~~~~~~~~ 100 (464)
...|...+..+-. ++++.+..+|+..... .|+...|...+....+.+. .+....+|+..... ..+...|..
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 3344444444433 7899999999999872 4788899888888777763 45566677665432 346678888
Q ss_pred HHHHHH----hhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcC-------------CCCcccHHHHHHHHHhCCCCC
Q 044770 101 LVIACL----DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS-------------PGRRKTIPNILRQMKADKVAP 163 (464)
Q Consensus 101 li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~ 163 (464)
.+..+. ..++.+.+..+|++.+......-...|......-.. .+.+..|..+++.+...--..
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 887654 356788899999999873211112222222211100 012223344444443210011
Q ss_pred ChhhHHHHHHHHHccC--C-----hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChh
Q 044770 164 HVSTFHILMKIEANDH--N-----IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWS 236 (464)
Q Consensus 164 ~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (464)
+...|...+..-...+ - .+.+..+|+++.... +.+...|...+.-+.+.|+.+.|..++++.... +.+..
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~ 247 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMF 247 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHH
Confidence 3345555555432221 1 345678898887653 345777888888888899999999999999887 33332
Q ss_pred hHHHHHHHHHhhcChhhH-HHHHHHhccC---------CCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhh
Q 044770 237 TLDVLIILYGYLAKGKDL-ERIWATVQEL---------PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306 (464)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a-~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 306 (464)
.+. .|....+.+.. ..+.+..... +......|...+....+.++.+.|..+|++. .. ...+...
T Consensus 248 l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v 321 (493)
T 2uy1_A 248 LSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHV 321 (493)
T ss_dssp HHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHH
T ss_pred HHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHH
Confidence 222 23222222222 1222211100 0112245667777777788899999999999 32 1223334
Q ss_pred HHHHHHHHHh-cCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHH
Q 044770 307 YNSVISVYCK-NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385 (464)
Q Consensus 307 ~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ 385 (464)
|......-.. .++.+.|..+|+...+.. +-++..+...+.-....|+.+.|..+|+.+ . .....|.
T Consensus 322 ~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~-------~-----k~~~lw~ 388 (493)
T 2uy1_A 322 FIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL-------E-----KTSRMWD 388 (493)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS-------C-----CBHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------H-----HHHHHHH
Confidence 4332222222 336999999999998753 113444555666667889999999999987 2 2567788
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHH
Q 044770 386 SIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
..+..-...|+.+.+..++++..+
T Consensus 389 ~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 389 SMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888887888999999999988774
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.5e-07 Score=78.36 Aligned_cols=104 Identities=10% Similarity=-0.017 Sum_probs=48.8
Q ss_pred CCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChh--HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCh------
Q 044770 144 GRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIE--GLMKVYSDMKRSEVEPNEVSYCILATAHAVARL------ 215 (464)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~------ 215 (464)
+++++++.+++.+.+.. +.+-.+|+.-...+.+.|.++ ++++.++++.+.... |...|+.-...+.+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 34455555555555433 344445544444444445554 555555555544322 44445444444444333
Q ss_pred hhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcC
Q 044770 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250 (464)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (464)
++++++.++.+... .+-|...|+.....+.+.|+
T Consensus 202 ~~eEl~~~~~aI~~-~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 202 IDEELNYVKDKIVK-CPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh-CCCCccHHHHHHHHHHhcCC
Confidence 45555555555443 22344444444444444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-08 Score=81.62 Aligned_cols=163 Identities=11% Similarity=0.123 Sum_probs=127.0
Q ss_pred hchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHH-H
Q 044770 27 GEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIA-C 105 (464)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~-~ 105 (464)
..+......+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...|+++....|+...+..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHH
Confidence 456677788899999999999999987743 3456788899999999999999999999998875544333322212 2
Q ss_pred HhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChhHH
Q 044770 106 LDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAP-HVSTFHILMKIEANDHNIEGL 184 (464)
Q Consensus 106 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 184 (464)
...+...+|+..+++..+.. +-+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233345788999988863 3357889999999999999999999999998864222 355788899999999999999
Q ss_pred HHHHHHHH
Q 044770 185 MKVYSDMK 192 (464)
Q Consensus 185 ~~~~~~m~ 192 (464)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-08 Score=99.45 Aligned_cols=128 Identities=9% Similarity=-0.046 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc
Q 044770 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281 (464)
Q Consensus 202 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (464)
.+..+..++.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...|+...+..+.+...+..+..+|.+
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~ 513 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL 513 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34444444444444444444444444331 12333444444444444444444444444444333334444445555555
Q ss_pred cCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
.|++++ ...|++..+.. +.+...|..+..++.+.|++++|+..|++..+
T Consensus 514 ~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 514 AGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred cCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 555555 55555544422 12334455555555555555555555555444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-07 Score=78.27 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=31.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcc----HHHHHHHHHHHHhcCChHHHHHHHHHhHH
Q 044770 310 VISVYCKNGFIDKASGLLKEMSMNGCKPN----AITYRHLALGCFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 310 li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 367 (464)
+...|.+.|++++|+..|+++++. .|+ ...+..+..++.+.|+.++|.+.++.+..
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 444555666666666666666553 222 13455555566666666666666665543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.3e-09 Score=80.92 Aligned_cols=122 Identities=6% Similarity=-0.041 Sum_probs=63.2
Q ss_pred HHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCccc
Q 044770 70 EFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKT 148 (464)
Q Consensus 70 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (464)
.++...|++++|+..++......| +...+-.+...|.+.|++++|++.|++.++.. +-+..+|..+..++.+.|++++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 334445556666666655554422 23444555556666666666666666665542 2244555555555555555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHH-HHHHHh
Q 044770 149 IPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKV-YSDMKR 193 (464)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~m~~ 193 (464)
|...|+...+.. +-+...|..+...|.+.|++++|.+. +++..+
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 555555555532 33344555555555555555544433 344443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.2e-08 Score=82.45 Aligned_cols=184 Identities=9% Similarity=0.016 Sum_probs=124.8
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCC-chhHHHHHHHHHhhcChHHHHHHhhhcCCCCCch----hHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK-ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNE----LLYN 99 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~ 99 (464)
++..+......+.+.|++++|+..|+.+.+..+..|. ...+..+..++.+.|++++|...|+++....|+. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455667778889999999999999999885433222 3567788889999999999999999987664432 2444
Q ss_pred HHHHHHHh------------------hCcHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHhcCCCCcccHHHHHHHHHhCC
Q 044770 100 NLVIACLD------------------KGVIKLSLEYMKKMRVLGHSIS-YLVFNRLIILNSSPGRRKTIPNILRQMKADK 160 (464)
Q Consensus 100 ~li~~~~~------------------~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (464)
.+..++.. .|++++|+..|+++++.. |+ ...+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH---
Confidence 44444443 456777777777776642 32 2222211110 00001110
Q ss_pred CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc----HhHHHHHHHHHHhcChhhHHHHHHHHHHhcc
Q 044770 161 VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN----EVSYCILATAHAVARLYTVAETYVEALEKSM 230 (464)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 230 (464)
.....+...+.+.|++++|...|+++.+. .|+ ...+..+..++.+.|++++|.+.++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01134567888999999999999999876 333 2467788899999999999999999887764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.93 E-value=8.5e-08 Score=84.12 Aligned_cols=230 Identities=10% Similarity=0.020 Sum_probs=136.6
Q ss_pred CCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHH
Q 044770 143 PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETY 222 (464)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 222 (464)
.|++++|.+++++..+.. +.. + +...++++.|...|.+. ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 466778888888776531 111 0 11135666666666554 3456667777777777
Q ss_pred HHHHHhccCCC-----ChhhHHHHHHHHHhhcChhhHHHHHHHhcc----CCCC--chhhHHHHHHHhhccCChHHHHHH
Q 044770 223 VEALEKSMTGN-----NWSTLDVLIILYGYLAKGKDLERIWATVQE----LPNV--RSKSYVLAIEAFGRIAQVSRAEEL 291 (464)
Q Consensus 223 ~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 291 (464)
|.+........ -..++..+..+|...|++++|...++.... ...+ ...++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 77664431111 134566667777777777777777776544 1111 13456777778877 888888888
Q ss_pred HHHHHhccccC-----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCccH-HHHHHHHHHHHhcCChHHHHHH
Q 044770 292 WLEMQSVKQLK-----ATEQYNSVISVYCKNGFIDKASGLLKEMSMN----GCKPNA-ITYRHLALGCFKSNLVEEGFKA 361 (464)
Q Consensus 292 ~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~~~~~~a~~~ 361 (464)
|++..+..... ...+++.+...|.+.|++++|+..|++..+. +..+.. ..+..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88776532111 1356777888888888888888888887652 221211 2455566667777888888888
Q ss_pred HHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 044770 362 LELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENL 403 (464)
Q Consensus 362 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 403 (464)
|++++ ..+ .............++.++ ..|+.+.+..+
T Consensus 218 ~~~al-~~p---~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIP---GFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TST---TSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCC---CCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 88873 211 000011122334455544 56676655553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.8e-07 Score=77.23 Aligned_cols=222 Identities=8% Similarity=-0.006 Sum_probs=160.7
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC--CcccHHHHHHHHHhCCCCCChhhHHHHHHHH----Hcc--
Q 044770 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG--RRKTIPNILRQMKADKVAPHVSTFHILMKIE----AND-- 178 (464)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-- 178 (464)
+....++|+++++.++..+ +-+..+|+.--..+...+ +++++++.++.+.... +-+..+|+.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 3344468999998888864 234556777777777777 8889999998888764 45556666554444 444
Q ss_pred -CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhh--HHHHHHHHHHhccCCCChhhHHHHHHHHHhhcC-----
Q 044770 179 -HNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYT--VAETYVEALEKSMTGNNWSTLDVLIILYGYLAK----- 250 (464)
Q Consensus 179 -~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 250 (464)
+++++++.+++.+.+.. +.+..+|+.-...+.+.|.++ +++++++++.+.. +-|...|+.-...+...+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence 78899999999998764 347788888777788888888 9999999998864 3466677766666666665
Q ss_pred -hhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHH-HHHHHHHHHhcc--ccCChhhHHHHHHHHHhcCChhHHHHH
Q 044770 251 -GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSR-AEELWLEMQSVK--QLKATEQYNSVISVYCKNGFIDKASGL 326 (464)
Q Consensus 251 -~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~ 326 (464)
++++.+.++......+.+...|+.+...+.+.|+... +..+.....+.+ .+.++..+..+...|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 6777777777777777777788877777777776444 445555555432 234667788888888888888888888
Q ss_pred HHHHHh
Q 044770 327 LKEMSM 332 (464)
Q Consensus 327 ~~~m~~ 332 (464)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888875
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-06 Score=76.63 Aligned_cols=165 Identities=8% Similarity=0.009 Sum_probs=117.0
Q ss_pred HHHHHhhcChhhHHHHHHHhccCCCCchh------hHHHHHHHhhccCChHHHHHHHHHHHhcccc-CC----hhhHHHH
Q 044770 242 IILYGYLAKGKDLERIWATVQELPNVRSK------SYVLAIEAFGRIAQVSRAEELWLEMQSVKQL-KA----TEQYNSV 310 (464)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 310 (464)
+..+...|++++|...++........... .+..+...+...|++++|...|+...+.... ++ ..+|+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34445555555555555555442222111 2335667777888999999999998873322 22 2368899
Q ss_pred HHHHHhcCChhHHHHHHHHHHh----C-CCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHH
Q 044770 311 ISVYCKNGFIDKASGLLKEMSM----N-GCKPN-AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLET 383 (464)
Q Consensus 311 i~~~~~~~~~~~a~~~~~~m~~----~-g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~ 383 (464)
...|...|++++|+..|+++.+ . +..+. ..++..+...|...|++++|...++++++.... .+..+ -..+
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~---~~~~~~~~~~ 238 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR---INSMALIGQL 238 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTBCTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---cCcHHHHHHH
Confidence 9999999999999999999874 1 22222 247888899999999999999999999876542 23333 3677
Q ss_pred HHHHHHHHHhcCC-hhhHHHHHHHHHH
Q 044770 384 TLSIIEIFAEKGD-VGNAENLFEELKK 409 (464)
Q Consensus 384 ~~~li~~~~~~g~-~~~A~~~~~~m~~ 409 (464)
|..+...|.+.|+ +++|.+.+++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999999995 6999999888764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.4e-08 Score=85.92 Aligned_cols=226 Identities=10% Similarity=-0.036 Sum_probs=143.6
Q ss_pred hhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHH
Q 044770 107 DKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMK 186 (464)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (464)
..|++++|.+++++..+.. +.. .+...++++.|...|.+. ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3567788888887776531 111 111146677777776654 345667788888887
Q ss_pred HHHHHHhC----CCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCC-----ChhhHHHHHHHHHhhcChhhHHH
Q 044770 187 VYSDMKRS----EVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTGN-----NWSTLDVLIILYGYLAKGKDLER 256 (464)
Q Consensus 187 ~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~ 256 (464)
.|.+..+. +-.+ -..+|+.+..+|.+.|++++|+..|++....-... ...++..+..+|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77766532 1111 13466777777888888888888887765431111 13456677777777 88888888
Q ss_pred HHHHhccCC----C--CchhhHHHHHHHhhccCChHHHHHHHHHHHhccc----cCC-hhhHHHHHHHHHhcCChhHHHH
Q 044770 257 IWATVQELP----N--VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQ----LKA-TEQYNSVISVYCKNGFIDKASG 325 (464)
Q Consensus 257 ~~~~~~~~~----~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~-~~~~~~li~~~~~~~~~~~a~~ 325 (464)
.++...... . ....++..+...|...|++++|...|++..+... .+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 887765511 1 1134677888999999999999999998876321 111 2256667777888899999999
Q ss_pred HHHHHHhCCCC-cc---HHHHHHHHHHHHhcCChHHHHH
Q 044770 326 LLKEMSMNGCK-PN---AITYRHLALGCFKSNLVEEGFK 360 (464)
Q Consensus 326 ~~~~m~~~g~~-p~---~~~~~~ll~~~~~~~~~~~a~~ 360 (464)
.|++.. .... ++ ......++.++ ..++.+....
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999988 3211 11 12344455554 5566665555
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.5e-08 Score=84.35 Aligned_cols=166 Identities=9% Similarity=-0.066 Sum_probs=91.4
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhh-HHH
Q 044770 162 APHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWST-LDV 240 (464)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 240 (464)
+.+...+..+...+...|++++|...|++..+.. +-+...+..+...+.+.|++++|...++++.... |+... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3344455556666667777777777777766542 2244556666666777777777777776665432 23221 112
Q ss_pred HHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccC-ChhhHHHHHHHHHhcCC
Q 044770 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-ATEQYNSVISVYCKNGF 319 (464)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~ 319 (464)
....+...++.+.+...++......+.+...+..+...|...|++++|...|.++.+..... +...+..++..+...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 22224445555555555555555444555555566666666666666666666655532111 13455555666666666
Q ss_pred hhHHHHHHHHH
Q 044770 320 IDKASGLLKEM 330 (464)
Q Consensus 320 ~~~a~~~~~~m 330 (464)
.++|...|++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 66655555543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-07 Score=76.20 Aligned_cols=176 Identities=10% Similarity=-0.040 Sum_probs=106.4
Q ss_pred cHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcC----hhhHHHHHH
Q 044770 148 TIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR----LYTVAETYV 223 (464)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----~~~~a~~~~ 223 (464)
+|.+.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666543 45555566666666677777777777766553 34455555555555 4 666777777
Q ss_pred HHHHhccCCCChhhHHHHHHHHHh----hcChhhHHHHHHHhccCCCC--chhhHHHHHHHhhc----cCChHHHHHHHH
Q 044770 224 EALEKSMTGNNWSTLDVLIILYGY----LAKGKDLERIWATVQELPNV--RSKSYVLAIEAFGR----IAQVSRAEELWL 293 (464)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~a~~~~~ 293 (464)
++..+.| ++..+..+...|.. .++.++|..+++......+. ....+..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7665543 34455555555554 55666666666666554442 24446666666666 667777777777
Q ss_pred HHHhccccCChhhHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 044770 294 EMQSVKQLKATEQYNSVISVYCKN-G-----FIDKASGLLKEMSMNGC 335 (464)
Q Consensus 294 ~~~~~~~~~~~~~~~~li~~~~~~-~-----~~~~a~~~~~~m~~~g~ 335 (464)
+..+. ..+...+..+...|... | ++++|..+|+...+.|.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77664 22444566666666543 2 67777777777776653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-08 Score=78.81 Aligned_cols=56 Identities=7% Similarity=0.011 Sum_probs=21.5
Q ss_pred HHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 044770 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMK 192 (464)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 192 (464)
+...|.+.|++++|.+.|++.++.. +-+..+|..+..++.+.|++++|...|++..
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSV 92 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 3333444444444444444433322 2233333333344444444444444443333
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-07 Score=78.02 Aligned_cols=177 Identities=8% Similarity=-0.085 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhC----cHHHHHHHHH
Q 044770 44 RALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKG----VIKLSLEYMK 119 (464)
Q Consensus 44 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~ 119 (464)
+|++.|+...+. -+...+..+...|...+++++|...|++..+. .+...+..+...|.. + ++++|+..|+
T Consensus 4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 345555555552 24556666666666677777777777665543 345556666666665 5 6777777777
Q ss_pred HHHHcCCCCchhhHHHHHHHhcC----CCCcccHHHHHHHHHhCCCC-CChhhHHHHHHHHHc----cCChhHHHHHHHH
Q 044770 120 KMRVLGHSISYLVFNRLIILNSS----PGRRKTIPNILRQMKADKVA-PHVSTFHILMKIEAN----DHNIEGLMKVYSD 190 (464)
Q Consensus 120 ~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 190 (464)
+..+.| +...+..|...|.. .+++++|...|++..+.|.. .+...+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 776654 45566666666665 66777777777777765411 125566666666666 6677777777777
Q ss_pred HHhCCCCCcHhHHHHHHHHHHhc-C-----hhhHHHHHHHHHHhccC
Q 044770 191 MKRSEVEPNEVSYCILATAHAVA-R-----LYTVAETYVEALEKSMT 231 (464)
Q Consensus 191 m~~~~~~p~~~~~~~li~~~~~~-~-----~~~~a~~~~~~~~~~~~ 231 (464)
..+. ..+...+..+...|... | ++++|..+|+...+.|.
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7665 22334555555555543 2 67777777777766653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=8.1e-08 Score=92.21 Aligned_cols=151 Identities=9% Similarity=-0.089 Sum_probs=65.3
Q ss_pred CcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 044770 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (464)
|++++|++.|++..+.. +.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.|
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45555555555554432 2234445555555555555555555555555432 333445555555555555555555555
Q ss_pred HHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhh---cChhhHHHHHHHhcc
Q 044770 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYL---AKGKDLERIWATVQE 263 (464)
Q Consensus 189 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 263 (464)
++..+.. +.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.++....
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 5554432 1134445555555555555555555555554431 22334444444444444 444444444444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=7.2e-08 Score=92.56 Aligned_cols=153 Identities=8% Similarity=-0.087 Sum_probs=102.2
Q ss_pred hcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHH
Q 044770 39 LQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEY 117 (464)
Q Consensus 39 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 117 (464)
.|++++|++.++.+.+.. +.+...+..+...+...|++++|.+.|++..+..| +...|..+...+...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467788888888877632 23456777788888888888888888888766633 567788888888888888888888
Q ss_pred HHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc---CChhHHHHHHHHHHhC
Q 044770 118 MKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND---HNIEGLMKVYSDMKRS 194 (464)
Q Consensus 118 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~ 194 (464)
|++..+.. +.+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88887763 3356677778888888888888888888877654 44566777777888887 8888888888887765
Q ss_pred C
Q 044770 195 E 195 (464)
Q Consensus 195 ~ 195 (464)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.83 E-value=7e-08 Score=78.84 Aligned_cols=160 Identities=10% Similarity=-0.001 Sum_probs=105.3
Q ss_pred hhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhc----ccc-CChhhHHHHHHHHHhcCChh
Q 044770 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV----KQL-KATEQYNSVISVYCKNGFID 321 (464)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~ 321 (464)
..|++++|.+.++.+...+......+..+...+...|++++|...+++..+. +.. .....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455556655444444444444556777777777788888888887776642 111 23456777888888889999
Q ss_pred HHHHHHHHHHhC----CCCc--cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCC-CcHHHHHHHHHHHHhc
Q 044770 322 KASGLLKEMSMN----GCKP--NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSST-PWLETTLSIIEIFAEK 394 (464)
Q Consensus 322 ~a~~~~~~m~~~----g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~ 394 (464)
+|...+++..+. +-.| ....+..+...+...|++++|...++++++.... .+.. ....++..+...+...
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ---ADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHC
Confidence 998888877652 2122 2345667777888889999999999988765321 1111 1234467888888899
Q ss_pred CChhhHHHHHHHHHH
Q 044770 395 GDVGNAENLFEELKK 409 (464)
Q Consensus 395 g~~~~A~~~~~~m~~ 409 (464)
|++++|...+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999988887764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-06 Score=76.63 Aligned_cols=171 Identities=6% Similarity=-0.092 Sum_probs=101.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCC-CCCcHh----HHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 044770 171 LMKIEANDHNIEGLMKVYSDMKRSE-VEPNEV----SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILY 245 (464)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (464)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|+..+++........+... .
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~-~------ 153 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY-Q------ 153 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT-H------
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH-H------
Confidence 3556677788888888887776542 122211 222344455556677777777777765322211110 0
Q ss_pred HhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhc-----cccC-ChhhHHHHHHHHHhcCC
Q 044770 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV-----KQLK-ATEQYNSVISVYCKNGF 319 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~~~ 319 (464)
...+++.+...|...|++++|...|+++.+. +..+ ...+|..+...|.+.|+
T Consensus 154 ----------------------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 3u3w_A 154 ----------------------NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp ----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH
Confidence 0112555666666666666666666665521 1111 23367777888888888
Q ss_pred hhHHHHHHHHHHh----CCCCcc-HHHHHHHHHHHHhcCC-hHHHHHHHHHhHHHHh
Q 044770 320 IDKASGLLKEMSM----NGCKPN-AITYRHLALGCFKSNL-VEEGFKALELGMKLIT 370 (464)
Q Consensus 320 ~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~ 370 (464)
+++|+..+++..+ .+..+. ..+|..+..++...|+ +++|...+++++.+..
T Consensus 212 y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 8888888777654 222222 5677777778888884 5888888888877654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.2e-07 Score=74.27 Aligned_cols=126 Identities=4% Similarity=-0.105 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC
Q 044770 65 YSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144 (464)
Q Consensus 65 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 144 (464)
+..+...+...|++++|...|++... ++...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 34455566677777777777777653 466677777777777777777777777777653 335566777777777777
Q ss_pred CcccHHHHHHHHHhCCCCCC----------------hhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 044770 145 RRKTIPNILRQMKADKVAPH----------------VSTFHILMKIEANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 194 (464)
++++|...|+...+.. +.+ ...+..+..++.+.|++++|...|++..+.
T Consensus 86 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777776642 222 256777888888888888888888888765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-06 Score=76.03 Aligned_cols=126 Identities=6% Similarity=-0.115 Sum_probs=85.7
Q ss_pred HHHHhhcChhhHHHHHHHhccC----CCC--chhhHHHHHHHhhccCChHHHHHHHHHHHhc-cccCC-----hhhHHHH
Q 044770 243 ILYGYLAKGKDLERIWATVQEL----PNV--RSKSYVLAIEAFGRIAQVSRAEELWLEMQSV-KQLKA-----TEQYNSV 310 (464)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l 310 (464)
..+...|++++|...++..... ... ...+++.+...|...|++++|...|++..+. ...|+ ..+|..+
T Consensus 123 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nl 202 (293)
T 2qfc_A 123 AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202 (293)
T ss_dssp HHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhH
Confidence 3444455555555555544321 111 1235778888888889999999988887631 01111 2578888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC----CCc-cHHHHHHHHHHHHhcCChHHH-HHHHHHhHHH
Q 044770 311 ISVYCKNGFIDKASGLLKEMSMNG----CKP-NAITYRHLALGCFKSNLVEEG-FKALELGMKL 368 (464)
Q Consensus 311 i~~~~~~~~~~~a~~~~~~m~~~g----~~p-~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~ 368 (464)
...|...|++++|+..+++..+.. ..+ -..+|..+...+...|++++| ...++.++.+
T Consensus 203 g~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999999999999999998876521 111 156788888899999999999 7878888654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.72 E-value=9.2e-06 Score=70.53 Aligned_cols=133 Identities=9% Similarity=0.039 Sum_probs=102.0
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhcccc---CC--hhhHHHHHHHHHhcCChhHHHHHHHHHHh---C-CCCc--cHHH
Q 044770 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQL---KA--TEQYNSVISVYCKNGFIDKASGLLKEMSM---N-GCKP--NAIT 341 (464)
Q Consensus 273 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~-g~~p--~~~~ 341 (464)
..+...+...|++++|...+++..+.... +. ..+|+.+...|...|++++|+..|++..+ . +-.+ ...+
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~ 198 (293)
T 2qfc_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHH
Confidence 34666778899999999999998753211 11 44788999999999999999999999873 2 1112 1257
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhH-HHHHHHHH
Q 044770 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNA-ENLFEELK 408 (464)
Q Consensus 342 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 408 (464)
+..+...|...|++++|...++++++.... .+... -..+|..+...|.+.|++++| ...+++..
T Consensus 199 ~~nlg~~y~~~~~y~~Al~~~~kal~~~~~---~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCR---INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 888899999999999999999999876432 22222 356788999999999999999 77777665
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=7.7e-07 Score=73.21 Aligned_cols=123 Identities=11% Similarity=-0.013 Sum_probs=65.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcC
Q 044770 171 LMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK 250 (464)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (464)
+...+...|++++|...|++.. .|+...|..+..++.+.|++++|...+++..... +.+...+..+..++...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3444455555555555555442 3344555555555555555555555555554432 2234444445555555555
Q ss_pred hhhHHHHHHHhccCCCCc----------------hhhHHHHHHHhhccCChHHHHHHHHHHHhc
Q 044770 251 GKDLERIWATVQELPNVR----------------SKSYVLAIEAFGRIAQVSRAEELWLEMQSV 298 (464)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 298 (464)
+++|...++......+.+ ...+..+...|...|++++|...|+...+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 555555555444422222 245666667777777777777777776663
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.9e-06 Score=72.68 Aligned_cols=166 Identities=11% Similarity=0.017 Sum_probs=73.7
Q ss_pred HHHHHhhhcCCCCC-chhHHHHHHHHHHhhC-cHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCC-C-CcccHHHHHHH
Q 044770 80 QGEKLFCCIPKDYQ-NELLYNNLVIACLDKG-VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP-G-RRKTIPNILRQ 155 (464)
Q Consensus 80 ~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~ 155 (464)
+|+++++.+....| +..+|+.--..+...| .++++++.++.++... +-+..+|+.-...+.+. + ++++++++++.
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 34444444333322 2333444433333444 2555555555555432 22333343333333222 3 44455555555
Q ss_pred HHhCCCCCChhhHHHHHHHHHccCChh--------HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCh-------hhHHH
Q 044770 156 MKADKVAPHVSTFHILMKIEANDHNIE--------GLMKVYSDMKRSEVEPNEVSYCILATAHAVARL-------YTVAE 220 (464)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-------~~~a~ 220 (464)
+.+.. +.|-..|+.-...+.+.+.++ ++++.++++.+..+. |...|+.....+.+.+. +++++
T Consensus 151 ~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eEL 228 (349)
T 3q7a_A 151 SLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDEL 228 (349)
T ss_dssp HTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 55433 334444444333333333333 566666666554322 55555555555544443 45555
Q ss_pred HHHHHHHhccCCCChhhHHHHHHHHHhhc
Q 044770 221 TYVEALEKSMTGNNWSTLDVLIILYGYLA 249 (464)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (464)
+.+++.... .+-|...|+-+-..+.+.|
T Consensus 229 e~~~~aI~~-~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 229 IYILKSIHL-IPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 555555544 2334455544444444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.4e-07 Score=71.19 Aligned_cols=112 Identities=6% Similarity=-0.084 Sum_probs=86.8
Q ss_pred hhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCC
Q 044770 85 FCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAP 163 (464)
Q Consensus 85 ~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (464)
++++....| +...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|++..+.. +.
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~ 102 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KN 102 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CC
Confidence 444444434 56678888888889999999999999888864 4467788888888888888888888888888764 45
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcH
Q 044770 164 HVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNE 200 (464)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 200 (464)
+...|..+..+|.+.|++++|...|++..+. .|+.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCH
Confidence 5677888888888888888888888888775 3444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.64 E-value=6e-07 Score=75.77 Aligned_cols=139 Identities=11% Similarity=-0.074 Sum_probs=101.2
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc--HHHHHHHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN--AITYRHLALGC 349 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~ 349 (464)
...+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 4556777888999999999998887643 433355556668889999999999998655421 221 23567778889
Q ss_pred HhcCChHHHHHHHHHhHHHHhhhhhcCCCCc--HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHH
Q 044770 350 FKSNLVEEGFKALELGMKLITTKKVRSSTPW--LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTL 422 (464)
Q Consensus 350 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 422 (464)
...|++++|+..|+++ ......|. .........++.+.|+.++|..+|+++.... |+...+..|
T Consensus 182 ~~LG~~~eAl~~l~~a-------~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEA-------NDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHH-------HTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH-------hcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 9999999999999998 33333253 3455677788889999999999999999865 653344443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=6.4e-05 Score=65.68 Aligned_cols=203 Identities=8% Similarity=-0.052 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHhccCCCChhhHHHHHHHHHhh-c-ChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChH-------
Q 044770 216 YTVAETYVEALEKSMTGNNWSTLDVLIILYGYL-A-KGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVS------- 286 (464)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~------- 286 (464)
+++++.+++.+... .+-+..+|+.-..++... + +.+++.++++.+....+.+..+|+.-.-.+.+.|.++
T Consensus 105 l~eEL~~~~~~L~~-nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 105 LEDELRLMNEFAVQ-NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp HHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhH
Confidence 44444444444433 122333333333333333 3 4444444444444444444444444333333333333
Q ss_pred -HHHHHHHHHHhccccCChhhHHHHHHHHHhcCC-------hhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCh---
Q 044770 287 -RAEELWLEMQSVKQLKATEQYNSVISVYCKNGF-------IDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV--- 355 (464)
Q Consensus 287 -~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~--- 355 (464)
++.+.++++.+.. +-|...|+.....+.+.++ ++++++.+++++..... |...|+-+-..+.+.|+.
T Consensus 184 ~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~ 261 (349)
T 3q7a_A 184 GSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVP 261 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccc
Confidence 6777777776633 3366667666666666654 56777777777764222 455555544444444433
Q ss_pred -----------------HHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-cHH
Q 044770 356 -----------------EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTK-YTF 417 (464)
Q Consensus 356 -----------------~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~ 417 (464)
.....+...++.... ......++......|++.|...|+.++|.++++.+.+. ..| ...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~ 338 (349)
T 3q7a_A 262 ILPAILPYTASKLNPDIETVEAFGFPMPSDPL--PEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAG 338 (349)
T ss_dssp GHHHHGGGTC--------------CCCCC-CC--CSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHH
T ss_pred ccccccccccccccccchhHHHHHHHHHhccc--ccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHH
Confidence 222222222210000 00112456777889999999999999999999998753 223 233
Q ss_pred HHHHHHH
Q 044770 418 VYNTLIK 424 (464)
Q Consensus 418 ~~~~li~ 424 (464)
.|+-.++
T Consensus 339 yw~~~~~ 345 (349)
T 3q7a_A 339 YWEFRRR 345 (349)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5655444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.8e-07 Score=80.69 Aligned_cols=98 Identities=3% Similarity=-0.103 Sum_probs=63.5
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (464)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++...+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34456666666777777777777777776643 2255666666666667777777777777666543 344556666666
Q ss_pred HHHccCChhHHHHHHHHHHh
Q 044770 174 IEANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 174 ~~~~~~~~~~a~~~~~~m~~ 193 (464)
++...|++++|...|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777766654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-06 Score=70.61 Aligned_cols=163 Identities=11% Similarity=0.003 Sum_probs=98.3
Q ss_pred HccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHH
Q 044770 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE 255 (464)
Q Consensus 176 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (464)
...|++++|.++++.+... .......+..+...+...|++++|...+++........+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------- 60 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--------------------- 60 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC---------------------
Confidence 4567777777755554432 123455666777777777777777777777654211100
Q ss_pred HHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhc----cccC--ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 044770 256 RIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV----KQLK--ATEQYNSVISVYCKNGFIDKASGLLKE 329 (464)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~ 329 (464)
..+....++..+...|...|++++|...+++..+. +..+ ....+..+...+...|++++|...+++
T Consensus 61 --------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 61 --------DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred --------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 01111223556666777777777777777765542 1011 234567777888888888888888887
Q ss_pred HHhCC---CCcc--HHHHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 330 MSMNG---CKPN--AITYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 330 m~~~g---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
..+.. -.|. ..++..+...+...|++++|...+++++++
T Consensus 133 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 76421 1111 234567777788889999999998888654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-07 Score=83.55 Aligned_cols=151 Identities=8% Similarity=-0.048 Sum_probs=107.2
Q ss_pred hcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc--------------hhhHHHHHHH
Q 044770 75 NHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS--------------YLVFNRLIIL 139 (464)
Q Consensus 75 ~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~l~~~ 139 (464)
.+++++|...|+......| +...|..+...+.+.|++++|+..|++..+...... ..+|..+..+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666665544323 567888999999999999999999999998642211 3677777777
Q ss_pred hcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHH
Q 044770 140 NSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVA 219 (464)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 219 (464)
+.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877754 4566677777778888888888888888777653 22455667777777777777776
Q ss_pred -HHHHHHHH
Q 044770 220 -ETYVEALE 227 (464)
Q Consensus 220 -~~~~~~~~ 227 (464)
...++.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 34555553
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.60 E-value=4.9e-07 Score=78.02 Aligned_cols=193 Identities=9% Similarity=-0.047 Sum_probs=100.5
Q ss_pred HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHh
Q 044770 200 EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF 279 (464)
Q Consensus 200 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (464)
...+..+...+.+.|++++|...|++.... .+.+...+..+..++...|++++|...++......+.+...+..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344455555555666666666666655554 2224555555666666666666666666666655555556677777777
Q ss_pred hccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHH
Q 044770 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359 (464)
Q Consensus 280 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 359 (464)
...|++++|...|+...+.... +...+...+....+. ..+.. +..........+......+ ..+ ..|+.++|+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 7778888888877776653211 111111122211111 11111 1122222233333333222 222 257778888
Q ss_pred HHHHHhHHHHhhhhhcCCCCcH-HHHHHHHHHHHhc-CChhhHHHHHHHHHH
Q 044770 360 KALELGMKLITTKKVRSSTPWL-ETTLSIIEIFAEK-GDVGNAENLFEELKK 409 (464)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 409 (464)
+.++.+ ....|+. .....+...+.+. +.+++|.++|+.+.+
T Consensus 156 ~~~~~a---------l~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRN---------HEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGG---------GTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhh---------hccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777776 2335543 2233333334443 567788888876654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-06 Score=67.80 Aligned_cols=95 Identities=12% Similarity=-0.093 Sum_probs=44.3
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHH--HHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYR--HLALGC 349 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~ 349 (464)
+..+...+...|++++|...+++..+.. +.+...|..+..++...|++++|...|++..+.... +...+. .....+
T Consensus 50 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~ 127 (166)
T 1a17_A 50 YGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKI 127 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4444444444555555555555544421 223444555555555555555555555555543211 222222 222224
Q ss_pred HhcCChHHHHHHHHHhHHH
Q 044770 350 FKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 350 ~~~~~~~~a~~~~~~~~~~ 368 (464)
...|++++|...+......
T Consensus 128 ~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 128 VKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccchHHH
Confidence 4455666666655555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.9e-06 Score=67.53 Aligned_cols=131 Identities=9% Similarity=0.005 Sum_probs=96.7
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 350 (464)
.+..+...+...|++++|...|+...+.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 36677778888899999999999888743 3467788888888999999999999999888753 235677888888888
Q ss_pred hcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 351 KSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
..|++++|...++.+++. ....+....+..++..+.+.|++++|...++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999988532 11222222223444447778889998888876653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-06 Score=64.38 Aligned_cols=98 Identities=12% Similarity=0.055 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (464)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455566666666666666666666666542 2344455555555556666666666666655432 3344555555566
Q ss_pred HHccCChhHHHHHHHHHHhC
Q 044770 175 EANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~ 194 (464)
+...|++++|...|+++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666655543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.2e-06 Score=71.36 Aligned_cols=188 Identities=10% Similarity=-0.062 Sum_probs=138.1
Q ss_pred hhcchHHHHHHHHHHHHcCCCCCCchhHHHH-------HHHHHhhcChHHHHHHhhhcCCCCC-------c---------
Q 044770 38 KLQLNKRALEVMEWVIRERPYRPKELDYSYL-------LEFTIKNHGISQGEKLFCCIPKDYQ-------N--------- 94 (464)
Q Consensus 38 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~-------~--------- 94 (464)
..++...|.+.|..+.+.. +-....|..+ ...+.+.++..++...+..-....| +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5789999999999999854 2344567777 5677777777777777666555322 1
Q ss_pred ------hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCC--hh
Q 044770 95 ------ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH--VS 166 (464)
Q Consensus 95 ------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~ 166 (464)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 1234456778889999999999999888754 443355566668889999999999998665432 121 23
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc--HhHHHHHHHHHHhcChhhHHHHHHHHHHhcc
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN--EVSYCILATAHAVARLYTVAETYVEALEKSM 230 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 230 (464)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 567788899999999999999999875433253 3356666777889999999999999998864
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.8e-07 Score=73.46 Aligned_cols=119 Identities=9% Similarity=0.006 Sum_probs=71.4
Q ss_pred hhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHH-hcCCCCc--ccH
Q 044770 74 KNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIIL-NSSPGRR--KTI 149 (464)
Q Consensus 74 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~~~~--~~a 149 (464)
..|++++|...++..... +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 455566666666554443 2345666666667777777777777777666643 2345555556555 5566666 777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 044770 150 PNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 194 (464)
...++...+.. +.+...+..+...+...|++++|...|++..+.
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777766543 334556666666777777777777777776655
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-06 Score=64.85 Aligned_cols=62 Identities=11% Similarity=0.004 Sum_probs=29.9
Q ss_pred hhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 270 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
..|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|++.|++.++
T Consensus 48 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 48 ILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444444445555555555555444421 22344455555555555555555555555544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.7e-07 Score=70.18 Aligned_cols=109 Identities=6% Similarity=-0.097 Sum_probs=74.2
Q ss_pred HhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCC
Q 044770 84 LFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVA 162 (464)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (464)
.|+++....| +...+..+...+...|++++|+..|+...... +.+...|..+..++...|++++|...|++..... +
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 3444444323 45566677777777888888888887777653 3356667777777777777777777777776653 4
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 044770 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 194 (464)
.+...+..+..++...|++++|...|+...+.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45566667777777777777777777776653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.3e-07 Score=70.96 Aligned_cols=120 Identities=11% Similarity=0.055 Sum_probs=62.3
Q ss_pred HccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHH
Q 044770 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE 255 (464)
Q Consensus 176 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (464)
...|++++|...+++..+.. +.+...|..+..++...|++++|...|++.....
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------------- 74 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR------------------------- 74 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------------
Confidence 34556666666666655432 2244555556666666666666666666655442
Q ss_pred HHHHHhccCCCCchhhHHHHHHH-hhccCCh--HHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 256 RIWATVQELPNVRSKSYVLAIEA-FGRIAQV--SRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
+.+...+..+... +...|++ ++|...|+...+.. +.+...+..+...|...|++++|...|++..+
T Consensus 75 ----------p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 75 ----------GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp ----------CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 2222234444444 4455555 66666666555532 22344555566666666666666666666665
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.52 E-value=3e-06 Score=62.56 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
+..+...+...|++++|...++++.
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333333334444444444443333
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.9e-07 Score=74.86 Aligned_cols=151 Identities=6% Similarity=-0.171 Sum_probs=82.7
Q ss_pred HHHHHHHhhcChHHHHHHhhhcCCC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCch---------------
Q 044770 67 YLLEFTIKNHGISQGEKLFCCIPKD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISY--------------- 130 (464)
Q Consensus 67 ~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--------------- 130 (464)
..+......|+++.+.+.++.-... ......+..+...+...|++++|+..|++..+.... +.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIE 87 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHH
Confidence 3444555667778887777755433 224567788888899999999999999998874311 11
Q ss_pred -hhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHH
Q 044770 131 -LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATA 209 (464)
Q Consensus 131 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 209 (464)
..+..+..++...|++++|...++...+.. +.+...+..+..++...|++++|...|++..+.. +-+...+..+..+
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHH
Confidence 455555556666666666666666665543 3345555556666666666666666666655432 1134444455555
Q ss_pred HHhcChhhHHH
Q 044770 210 HAVARLYTVAE 220 (464)
Q Consensus 210 ~~~~~~~~~a~ 220 (464)
+...++..++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 55555444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-06 Score=67.41 Aligned_cols=92 Identities=7% Similarity=-0.111 Sum_probs=49.3
Q ss_pred HHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCC
Q 044770 240 VLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF 319 (464)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 319 (464)
.+...+...|++++|...|+.+....+.+...|..+..+|...|++++|...|++..+.. +.++..|..+..+|...|+
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~ 119 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKA 119 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 333344444444444444444444344444445555556666666666666666665532 2245556666666666666
Q ss_pred hhHHHHHHHHHHh
Q 044770 320 IDKASGLLKEMSM 332 (464)
Q Consensus 320 ~~~a~~~~~~m~~ 332 (464)
+++|...|++..+
T Consensus 120 ~~eA~~~~~~al~ 132 (151)
T 3gyz_A 120 PLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666655
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.9e-06 Score=63.52 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=8.7
Q ss_pred HHHHhhccCChHHHHHHHHHHH
Q 044770 275 AIEAFGRIAQVSRAEELWLEMQ 296 (464)
Q Consensus 275 l~~~~~~~g~~~~a~~~~~~~~ 296 (464)
+...+...|++++|.+.|++..
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333444444444444333
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=3e-06 Score=63.12 Aligned_cols=24 Identities=8% Similarity=-0.082 Sum_probs=9.9
Q ss_pred HHHHHHhhccCChHHHHHHHHHHH
Q 044770 273 VLAIEAFGRIAQVSRAEELWLEMQ 296 (464)
Q Consensus 273 ~~l~~~~~~~g~~~~a~~~~~~~~ 296 (464)
..+...+...|++++|...|++..
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333334444444444444444433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.6e-06 Score=63.26 Aligned_cols=94 Identities=12% Similarity=-0.064 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhcc
Q 044770 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI 282 (464)
Q Consensus 203 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (464)
+......+.+.|++++|+..|++..+. .+.+...+..+..++...|++++|+..++...+..+.+...|..+..+|...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKR-DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 333344444444444444444444433 1223344444444444444444444444444443344444555566666666
Q ss_pred CChHHHHHHHHHHHh
Q 044770 283 AQVSRAEELWLEMQS 297 (464)
Q Consensus 283 g~~~~a~~~~~~~~~ 297 (464)
|++++|.+.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666655
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=2.1e-06 Score=63.95 Aligned_cols=119 Identities=9% Similarity=-0.046 Sum_probs=67.6
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (464)
+...+..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34556666666667777777777777666542 2345555556666666666666666666665542 334455555566
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcCh
Q 044770 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARL 215 (464)
Q Consensus 174 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 215 (464)
.+...|++++|...|++..+.. +.+...+..+..++.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 6666666666666666655442 1234444444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.1e-06 Score=63.38 Aligned_cols=99 Identities=10% Similarity=-0.079 Sum_probs=58.1
Q ss_pred chhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 044770 129 SYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT 208 (464)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 208 (464)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34555556666666666666666666665543 3345556666666666666666666666655542 223455555666
Q ss_pred HHHhcChhhHHHHHHHHHHhc
Q 044770 209 AHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~ 229 (464)
++.+.|++++|...+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 666666666666666665543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-06 Score=66.66 Aligned_cols=106 Identities=9% Similarity=-0.045 Sum_probs=75.6
Q ss_pred HhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH
Q 044770 260 TVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339 (464)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 339 (464)
.+....+.+...+..+...+...|++++|...|+..... .+.+...|..+..+|...|++++|+..|++...... -+.
T Consensus 12 ~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~ 89 (148)
T 2vgx_A 12 MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEP 89 (148)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCT
T ss_pred HHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCc
Confidence 333333444445666777778888888888888887763 334667777788888888888888888888877421 245
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHH
Q 044770 340 ITYRHLALGCFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 340 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 367 (464)
..+..+..++...|++++|...|+.+++
T Consensus 90 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 90 RFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6677777778888888888888888754
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.3e-05 Score=72.18 Aligned_cols=194 Identities=7% Similarity=-0.077 Sum_probs=101.6
Q ss_pred HHhcCCCCcccHHHHHHHHHhCCCCC-Ch---------------hhHHHHHHHHHccCChhHHHHHHHHHHhCC-CCCcH
Q 044770 138 ILNSSPGRRKTIPNILRQMKADKVAP-HV---------------STFHILMKIEANDHNIEGLMKVYSDMKRSE-VEPNE 200 (464)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~ 200 (464)
+.+.+.|++++|.+.|..+.+..-.. +. ..+..+...|...|++++|.+++..+...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34556677777777777776643111 10 125566677777777777777776654321 11121
Q ss_pred hH----HHHHHHHHHhcChhhHHHHHHHHHHhc----cCCCC-hhhHHHHHHHHHhhcChhhHHHHHHHhcc------CC
Q 044770 201 VS----YCILATAHAVARLYTVAETYVEALEKS----MTGNN-WSTLDVLIILYGYLAKGKDLERIWATVQE------LP 265 (464)
Q Consensus 201 ~~----~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~ 265 (464)
.+ .+.+-..+...|+++.|..+++..... +..+. ..++..+...+...|++++|..+++.+.. ..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 11 122222233456667777776665332 11111 33455566666666777776666665543 11
Q ss_pred CCchhhHHHHHHHhhccCChHHHHHHHHHHHhcc--cc-C-C--hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 266 NVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVK--QL-K-A--TEQYNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 266 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~-~-~--~~~~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
+.....+..++..|...|++++|..+++...... .. | . ...+..+...+...|++++|...|.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1122345566666666666666666666554311 11 1 1 1234444445555666666666655554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=3.9e-06 Score=74.41 Aligned_cols=93 Identities=10% Similarity=-0.088 Sum_probs=51.3
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCF 350 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~ 350 (464)
|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++..+. .| +...+..+...+.
T Consensus 199 ~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 199 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH
Confidence 4555555556666666666666655532 234555666666666666666666666666553 22 3445555555555
Q ss_pred hcCChHHH-HHHHHHhHH
Q 044770 351 KSNLVEEG-FKALELGMK 367 (464)
Q Consensus 351 ~~~~~~~a-~~~~~~~~~ 367 (464)
..|+.++| ...+..|+.
T Consensus 276 ~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 56666555 334444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.5e-06 Score=65.56 Aligned_cols=136 Identities=10% Similarity=-0.022 Sum_probs=99.2
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHhcccc-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-cHH
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQL-KA----TEQYNSVISVYCKNGFIDKASGLLKEMSMN----GCKP-NAI 340 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~ 340 (464)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4667777788888888888888877653211 11 246778888899999999999999887652 1111 134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 341 TYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 341 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
.+..+...+...|++++|...++++++.... .+..+ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE---LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---ccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6677778889999999999999999765432 22222 245677888999999999999999988765
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.41 E-value=9.4e-06 Score=60.35 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHH
Q 044770 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLE 382 (464)
Q Consensus 305 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~ 382 (464)
..+..+...+.+.|++++|+..|++.++. .| +...|..+..+|...|++++|+..++.++++.+. .....+ -..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~a~ 84 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE--TRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc--cchhhHHHHH
Confidence 45777888889999999999999998884 34 5677888888899999999999999999765432 011111 134
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHH
Q 044770 383 TTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNT 421 (464)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 421 (464)
+|..+...+...|++++|.+.|++..+.. ||..+...
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~~ 121 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEF--RDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCHHHHHH
Confidence 67788899999999999999999988753 55544433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-05 Score=73.85 Aligned_cols=134 Identities=10% Similarity=-0.063 Sum_probs=94.7
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhc----cccC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC--C--CCc-cHHHH
Q 044770 273 VLAIEAFGRIAQVSRAEELWLEMQSV----KQLK-ATEQYNSVISVYCKNGFIDKASGLLKEMSMN--G--CKP-NAITY 342 (464)
Q Consensus 273 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g--~~p-~~~~~ 342 (464)
+.+...+...|+++.|..+++..... +..+ -..++..+...|...|++++|..++++.... + -.| ....+
T Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 178 (434)
T 4b4t_Q 99 TLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVH 178 (434)
T ss_dssp HHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 34445556678888888888776542 2112 2346778889999999999999999887642 1 122 24578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc--HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW--LETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 343 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
..++..|...|++++|..+++.+...... ....|. ...+..+...+...|++++|...|.+..+
T Consensus 179 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 179 LLESKVYHKLRNLAKSKASLTAARTAANS---IYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHhhc---CCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88889999999999999999998654321 222222 34567777888889999999888776653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.39 E-value=2e-06 Score=65.54 Aligned_cols=109 Identities=7% Similarity=-0.079 Sum_probs=76.5
Q ss_pred HhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCC
Q 044770 84 LFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVA 162 (464)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (464)
.|+++....| +...+..+...+...|++++|+..|+.....+ +.+...|..+..++...|++++|...|+...+.. +
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 83 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-I 83 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 3444444433 44566667777888888888888888887754 3456677777777888888888888888877754 4
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 044770 163 PHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 194 (464)
.+...+..+..++...|++++|...|+...+.
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55566777777888888888888888777654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=6.1e-06 Score=61.26 Aligned_cols=97 Identities=3% Similarity=-0.153 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (464)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++...+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3455566666667777777777777666643 3345566666666666666666666666666543 3345556666666
Q ss_pred HHccCChhHHHHHHHHHHh
Q 044770 175 EANDHNIEGLMKVYSDMKR 193 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~ 193 (464)
+...|++++|...|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 6666666666666666554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=9.5e-07 Score=71.79 Aligned_cols=88 Identities=14% Similarity=-0.092 Sum_probs=35.0
Q ss_pred HHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhH
Q 044770 243 ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322 (464)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 322 (464)
.++...|++++|...++......+.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...++..+
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333233333344445555555555555555555554421 1234444455555555444444
Q ss_pred HH-HHHHHHH
Q 044770 323 AS-GLLKEMS 331 (464)
Q Consensus 323 a~-~~~~~m~ 331 (464)
+. ..+..|.
T Consensus 175 ~~~~~~~~~f 184 (198)
T 2fbn_A 175 KDKLTFGGMF 184 (198)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 44 3344443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=7.3e-06 Score=60.80 Aligned_cols=62 Identities=10% Similarity=-0.020 Sum_probs=30.5
Q ss_pred hhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 270 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
..+..+..+|.+.|++++|...|++..+.. +.+...|..+..++...|++++|...|++..+
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 334444445555555555555555554422 22344455555555555555555555555544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=8.7e-06 Score=60.51 Aligned_cols=98 Identities=6% Similarity=-0.108 Sum_probs=48.1
Q ss_pred HHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcccc--CC----hhhHHHHHHHHH
Q 044770 242 IILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL--KA----TEQYNSVISVYC 315 (464)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~li~~~~ 315 (464)
...+.+.|++++|+..|+......+.+...|..+..+|...|++++|.+.|++..+.... ++ ..+|..+..++.
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~ 94 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ 94 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 333334444444444444333333333344555555555566666666666555442211 00 124555556666
Q ss_pred hcCChhHHHHHHHHHHhCCCCccHHH
Q 044770 316 KNGFIDKASGLLKEMSMNGCKPNAIT 341 (464)
Q Consensus 316 ~~~~~~~a~~~~~~m~~~g~~p~~~~ 341 (464)
..|++++|++.|++.+. ..||+..
T Consensus 95 ~~~~~~~A~~~~~kal~--~~~~~~~ 118 (127)
T 4gcn_A 95 KQNDLSLAVQWFHRSLS--EFRDPEL 118 (127)
T ss_dssp HTTCHHHHHHHHHHHHH--HSCCHHH
T ss_pred HcCCHHHHHHHHHHHHh--hCcCHHH
Confidence 66677777777766655 2344433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00086 Score=58.32 Aligned_cols=195 Identities=9% Similarity=0.018 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcC--hhhHHHHHHHhccCCCCchhhHHHHHHHhhccCC-hHHHHHHHH
Q 044770 217 TVAETYVEALEKSMTGNNWSTLDVLIILYGYLAK--GKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQ-VSRAEELWL 293 (464)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~ 293 (464)
++++.+++.+... .+-+..+|+.-..++...++ ++++..+++.+....+.+..+|+.-.-.+...|. ++++.+.++
T Consensus 91 ~~EL~~~~~~L~~-~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRV-NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3444444444332 12233333333333333332 3444444444444444444444444444444444 355555555
Q ss_pred HHHhccccCChhhHHHHHHHHHhc--------------CChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhc------
Q 044770 294 EMQSVKQLKATEQYNSVISVYCKN--------------GFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKS------ 352 (464)
Q Consensus 294 ~~~~~~~~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~------ 352 (464)
.+.+.. +-|...|+.....+.+. +.++++++.+...+.. .| |...|+-+-..+.+.
T Consensus 170 ~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 170 SLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCcccc
Confidence 555532 23455555544444433 3456677777777663 33 444444333333332
Q ss_pred -----CChHHHHHHHHHhHHHHhhhhhcCCCCc-HHHHHH---HHHHHHhcCChhhHHHHHHHHHHcCCCCcHH-HHHHH
Q 044770 353 -----NLVEEGFKALELGMKLITTKKVRSSTPW-LETTLS---IIEIFAEKGDVGNAENLFEELKKANYTKYTF-VYNTL 422 (464)
Q Consensus 353 -----~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l 422 (464)
+.++++++.++++++. .|+ ...+-. +..+....|..+++...++++.+.+ |-.. -|.-+
T Consensus 247 ~~~~~~~l~~el~~~~elle~---------~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D--p~r~~~y~d~ 315 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQEL---------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDL 315 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC--GGGHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhh---------CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC--cchhhHHHHH
Confidence 3466777777777432 232 122212 2222224567778888888888743 4333 45554
Q ss_pred HHHH
Q 044770 423 IKAY 426 (464)
Q Consensus 423 i~~~ 426 (464)
...+
T Consensus 316 ~~~~ 319 (331)
T 3dss_A 316 RSKF 319 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=2.3e-05 Score=56.98 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=10.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
.+..+..++...|++++|...+++..
T Consensus 74 ~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 74 GYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333334444444444444444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.8e-05 Score=56.45 Aligned_cols=57 Identities=19% Similarity=0.059 Sum_probs=22.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHH
Q 044770 170 ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227 (464)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 227 (464)
.+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 65 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 33344444444444444444443321 1123333334444444444444444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.27 E-value=4.4e-06 Score=62.21 Aligned_cols=98 Identities=8% Similarity=0.040 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCC--CCC----hhhHH
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKV--APH----VSTFH 169 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 169 (464)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 445555566666666666666666665542 23444555555555555555555555555544310 111 34455
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhC
Q 044770 170 ILMKIEANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~m~~~ 194 (464)
.+...+...|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555566666666666666655543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00028 Score=61.34 Aligned_cols=132 Identities=6% Similarity=-0.030 Sum_probs=59.9
Q ss_pred hhcchH-HHHHHHHHHHHcCCCCCCc-hhHHHHHHHHHhhcC----------hHHHHHHhhhcCCC-CCchhHHHHHHHH
Q 044770 38 KLQLNK-RALEVMEWVIRERPYRPKE-LDYSYLLEFTIKNHG----------ISQGEKLFCCIPKD-YQNELLYNNLVIA 104 (464)
Q Consensus 38 ~~~~~~-~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~-~~~~~~~~~li~~ 104 (464)
+.|.+. +|+++++.+... .|+. .+|+.--..+...+. +++++.+++.+... +.+..+|+.-...
T Consensus 41 ~~~e~s~eaL~~t~~~L~~---nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344443 566666666552 2332 233333333332222 34455555544443 2244455544444
Q ss_pred HHhhC--cHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCC-cccHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044770 105 CLDKG--VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR-RKTIPNILRQMKADKVAPHVSTFHILMKI 174 (464)
Q Consensus 105 ~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (464)
+...+ .+++++.+++.+.+.. +-|..+|+.-.-.+...|. ++++++.++.+++.. +-|...|+.....
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~l 188 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 188 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 44444 2555555555555543 2244444444444444444 245555555555443 3444444443333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-05 Score=57.94 Aligned_cols=62 Identities=6% Similarity=0.041 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
..+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|...+++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444455555555555555555544432 12334444444444455555555555554443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.26 E-value=9e-06 Score=60.48 Aligned_cols=98 Identities=9% Similarity=0.028 Sum_probs=51.7
Q ss_pred HHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhcccc--CC----hhhHHHHHHHHHhcC
Q 044770 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQL--KA----TEQYNSVISVYCKNG 318 (464)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~li~~~~~~~ 318 (464)
+...|+++.|...++......+.+...+..+...+...|++++|...++...+.... ++ ...|..+..++...|
T Consensus 14 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 93 (131)
T 1elr_A 14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEE 93 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhc
Confidence 333333333333333333322223334555555666666666666666665543211 11 456666777777777
Q ss_pred ChhHHHHHHHHHHhCCCCccHHHHHH
Q 044770 319 FIDKASGLLKEMSMNGCKPNAITYRH 344 (464)
Q Consensus 319 ~~~~a~~~~~~m~~~g~~p~~~~~~~ 344 (464)
++++|...|++..+. .|+......
T Consensus 94 ~~~~A~~~~~~~~~~--~~~~~~~~~ 117 (131)
T 1elr_A 94 KYKDAIHFYNKSLAE--HRTPDVLKK 117 (131)
T ss_dssp CHHHHHHHHHHHHHH--CCCHHHHHH
T ss_pred cHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 777777777777763 344444333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.2e-05 Score=61.29 Aligned_cols=97 Identities=16% Similarity=0.113 Sum_probs=73.3
Q ss_pred hhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 044770 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALG 348 (464)
Q Consensus 269 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 348 (464)
...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++.++... -+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3456677777888888888888888877743 33667788888888888888888888888877432 246677777888
Q ss_pred HHhcCChHHHHHHHHHhHH
Q 044770 349 CFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 349 ~~~~~~~~~a~~~~~~~~~ 367 (464)
+...|++++|...|+.+++
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 8888888888888888864
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.26 E-value=4.1e-05 Score=57.51 Aligned_cols=102 Identities=9% Similarity=-0.067 Sum_probs=79.5
Q ss_pred CchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHH
Q 044770 267 VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLA 346 (464)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 346 (464)
.+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...+++..+... .+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 344567777888888888888888888887743 33567888888888889999999999888887532 2567778888
Q ss_pred HHHHhcCChHHHHHHHHHhHHHHh
Q 044770 347 LGCFKSNLVEEGFKALELGMKLIT 370 (464)
Q Consensus 347 ~~~~~~~~~~~a~~~~~~~~~~~~ 370 (464)
.++...|++++|...|+.+++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHCh
Confidence 888888999999999998876543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-05 Score=60.28 Aligned_cols=91 Identities=12% Similarity=-0.042 Sum_probs=40.6
Q ss_pred HHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCCh
Q 044770 206 LATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQV 285 (464)
Q Consensus 206 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 285 (464)
+...+.+.|++++|...|++.... .+.+...+..+..++...|++++|...++......+.+...+..+..+|...|++
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCML-DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 333344444444444444444433 1123333334444444444444444444444333333333444555555555555
Q ss_pred HHHHHHHHHHHh
Q 044770 286 SRAEELWLEMQS 297 (464)
Q Consensus 286 ~~a~~~~~~~~~ 297 (464)
++|...|+...+
T Consensus 103 ~~A~~~~~~al~ 114 (142)
T 2xcb_A 103 DGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.24 E-value=9.8e-06 Score=58.34 Aligned_cols=90 Identities=8% Similarity=-0.151 Sum_probs=35.3
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc--cHHHHHHHHHHHHh
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP--NAITYRHLALGCFK 351 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~ 351 (464)
.+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...+++..+.. +. +...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHH
Confidence 33333444444444444444433321 1123334444444444444444444444444321 11 23333344444444
Q ss_pred c-CChHHHHHHHHHh
Q 044770 352 S-NLVEEGFKALELG 365 (464)
Q Consensus 352 ~-~~~~~a~~~~~~~ 365 (464)
. |++++|.+.++.+
T Consensus 89 ~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 89 IEGKEVEAEIAEARA 103 (112)
T ss_dssp CSSCSHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHH
Confidence 4 4444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.1e-05 Score=58.32 Aligned_cols=96 Identities=14% Similarity=-0.023 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc----HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHH
Q 044770 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN----EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDV 240 (464)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (464)
...+..+...+...|++++|...|++..+. .|+ ...|..+..++...|++++|...+++..+.. +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 344555555555566666666666655543 233 3445555555555566666655555554431 223334444
Q ss_pred HHHHHHhhcChhhHHHHHHHhcc
Q 044770 241 LIILYGYLAKGKDLERIWATVQE 263 (464)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~ 263 (464)
+..++...|++++|...++....
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444444333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=3e-05 Score=59.14 Aligned_cols=111 Identities=10% Similarity=-0.080 Sum_probs=78.8
Q ss_pred cChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCC----chhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHH
Q 044770 24 VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPK----ELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLY 98 (464)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~ 98 (464)
.+...+......+...|++++|++.|+...+. .|+ ...+..+...+...|++++|...+++.....| +...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 34556677777888888888888888888763 344 56677777788888888888888877665533 56677
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 044770 99 NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLII 138 (464)
Q Consensus 99 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 138 (464)
..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 777888888888888888888887753 223444444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.9e-05 Score=58.38 Aligned_cols=95 Identities=11% Similarity=-0.108 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc
Q 044770 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281 (464)
Q Consensus 202 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (464)
.|..+...+...|++++|...|++..... +.+...+..+..++...|+++.|...++......+.+...+..+...|..
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 89 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 89 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 33333444444444444444444433321 11223333333333333333333333333333222233334444444444
Q ss_pred cCChHHHHHHHHHHHh
Q 044770 282 IAQVSRAEELWLEMQS 297 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~ 297 (464)
.|++++|...|+...+
T Consensus 90 ~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 90 MESYDEAIANLQRAYS 105 (137)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555544443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.17 E-value=4e-05 Score=59.87 Aligned_cols=95 Identities=13% Similarity=-0.084 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc
Q 044770 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281 (464)
Q Consensus 202 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (464)
.|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++......+.+...|..+..+|..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444444444555555555554444431 12333334444444444444444444444333333333444455555555
Q ss_pred cCChHHHHHHHHHHHh
Q 044770 282 IAQVSRAEELWLEMQS 297 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~ 297 (464)
.|++++|...|++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 5555555555555544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.16 E-value=5e-06 Score=77.14 Aligned_cols=143 Identities=6% Similarity=-0.049 Sum_probs=85.9
Q ss_pred cChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCc--------------hhhHHHHHHHh
Q 044770 76 HGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSIS--------------YLVFNRLIILN 140 (464)
Q Consensus 76 g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~l~~~~ 140 (464)
+++++|...|+......| ....|..+...+.+.|++++|+..|++.++...... ...|..+..++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666655443322 456788889999999999999999999987432111 35555566666
Q ss_pred cCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHH
Q 044770 141 SSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220 (464)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 220 (464)
.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.+++.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665543 3345555566666666666666666666665542 113344555555555555555443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.9e-05 Score=73.19 Aligned_cols=134 Identities=10% Similarity=0.020 Sum_probs=103.5
Q ss_pred HHhhccCChHHHHHHHHHHHhcc---ccC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CC-CCcc-HHHH
Q 044770 277 EAFGRIAQVSRAEELWLEMQSVK---QLK----ATEQYNSVISVYCKNGFIDKASGLLKEMSM-----NG-CKPN-AITY 342 (464)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g-~~p~-~~~~ 342 (464)
..+...|++++|..++++..+.. ..| ...+++.|...|...|++++|..++++.++ .| --|+ ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34567899999999998876521 112 345789999999999999999999988764 22 1233 4678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 343 RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 343 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
+.|...|...|++++|..+++++++..........+....+.+.+..++...|.+++|..++.++++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999887665444433334566778888888999999999999999863
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.3e-05 Score=59.04 Aligned_cols=96 Identities=10% Similarity=-0.047 Sum_probs=77.0
Q ss_pred hchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHH
Q 044770 27 GEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIAC 105 (464)
Q Consensus 27 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~ 105 (464)
..+......+.+.|++++|+..|+.+.+.. +.+...|..+..++...|++++|+..|++.....| +...+..+..++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345667778888999999999999988743 34667788888888899999999999988776634 567888888888
Q ss_pred HhhCcHHHHHHHHHHHHHc
Q 044770 106 LDKGVIKLSLEYMKKMRVL 124 (464)
Q Consensus 106 ~~~~~~~~a~~~~~~m~~~ 124 (464)
...|++++|+..|++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8999999999999888764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.3e-05 Score=74.61 Aligned_cols=118 Identities=12% Similarity=-0.078 Sum_probs=54.0
Q ss_pred HHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHH
Q 044770 209 AHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRA 288 (464)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 288 (464)
.+.+.|++++|...+++..+. .+.+..++..+..++...|++++|...++...+..+.+...+..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 344556666666666665554 2223444555555555555555555555555444444444444555555555555555
Q ss_pred HHHHHHHHhccccCChhhHHHHHHH--HHhcCChhHHHHHHH
Q 044770 289 EELWLEMQSVKQLKATEQYNSVISV--YCKNGFIDKASGLLK 328 (464)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 328 (464)
.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555444421 1122233333333 444444444444444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.8e-05 Score=58.17 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=33.3
Q ss_pred HHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCCh
Q 044770 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLV 355 (464)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~ 355 (464)
..+.+.|++++|...|+...+. .+.+...|..+..++...|++++|+..|++..+. .| +...+..+..++...|++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQK-EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 3333444444444444444331 1113333344444444444444444444444332 12 223333333344444444
Q ss_pred HHHHHHHHHh
Q 044770 356 EEGFKALELG 365 (464)
Q Consensus 356 ~~a~~~~~~~ 365 (464)
++|...++.+
T Consensus 102 ~~A~~~~~~a 111 (121)
T 1hxi_A 102 NAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.1e-05 Score=59.00 Aligned_cols=84 Identities=14% Similarity=0.046 Sum_probs=51.7
Q ss_pred cCChHHHHHHHHHHHhcc--ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHH
Q 044770 282 IAQVSRAEELWLEMQSVK--QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGF 359 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 359 (464)
.|++++|...|++..+.+ .+.+...|..+..+|...|++++|+..|++..+.... +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 456666777777666643 2334556666777777777777777777777664221 3556666666677777777777
Q ss_pred HHHHHhH
Q 044770 360 KALELGM 366 (464)
Q Consensus 360 ~~~~~~~ 366 (464)
..++.++
T Consensus 82 ~~~~~al 88 (117)
T 3k9i_A 82 ELLLKII 88 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.4e-05 Score=59.73 Aligned_cols=63 Identities=10% Similarity=-0.064 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHH
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMN----GCKP-NAITYRHLALGCFKSNLVEEGFKALELGMKL 368 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 368 (464)
.+..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|...++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444455555555555555555544321 1111 1234455555566666666666666666554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.04 E-value=9e-05 Score=54.91 Aligned_cols=61 Identities=11% Similarity=0.016 Sum_probs=35.3
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHhccccCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA---TEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
.+..+..++...|++++|...|+...+... .+ ...+..+..++...|++++|...|+++.+
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555556666666666666666655321 12 34455566666666666666666666665
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0003 Score=53.45 Aligned_cols=110 Identities=9% Similarity=-0.048 Sum_probs=83.2
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccC------C-----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLK------A-----TEQYNSVISVYCKNGFIDKASGLLKEMSMN-----GC 335 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~ 335 (464)
+......+.+.|++++|...|++..+..... + ...|+.+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4456666777788888888888777643220 1 238899999999999999999999998883 12
Q ss_pred Ccc-HHHH----HHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHH
Q 044770 336 KPN-AITY----RHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383 (464)
Q Consensus 336 ~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~ 383 (464)
.|+ ...| .....++...|++++|+..|++++++.+ ...++.+....
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p--~d~~~~~~~~~ 144 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE--ERKGETPGKER 144 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HCCSCCTTHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC--CcHHHHHHHHH
Confidence 665 4567 8888999999999999999999988766 45666665544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.98 E-value=5.7e-05 Score=70.33 Aligned_cols=123 Identities=9% Similarity=-0.006 Sum_probs=82.4
Q ss_pred HHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCC
Q 044770 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNL 354 (464)
Q Consensus 275 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 354 (464)
+...+.+.|++++|.+.|++..+. .+.+...|..+..+|.+.|++++|+..+++..+... -+...+..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 344566778888888888888774 233567788888888888888888888888887532 256677788888888888
Q ss_pred hHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHH
Q 044770 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFE 405 (464)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 405 (464)
+++|...++++++. ....+.....-..+..+.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKV------KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHH------STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888542 1222233322223333777888888888877
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00013 Score=54.02 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 203 YCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 203 ~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
+..+..++.+.|++++|...++++.+
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33334444444444444444444433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.96 E-value=4e-05 Score=55.86 Aligned_cols=86 Identities=7% Similarity=-0.109 Sum_probs=57.1
Q ss_pred CCCcccHHHHHHHHHhCC--CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHH
Q 044770 143 PGRRKTIPNILRQMKADK--VAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAE 220 (464)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 220 (464)
.|++++|...|++..+.+ -+.+...+..+...+...|++++|...|++..+.. +-+...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 467777777777777643 13344566777777777888888888887777653 224566677777777788888888
Q ss_pred HHHHHHHhc
Q 044770 221 TYVEALEKS 229 (464)
Q Consensus 221 ~~~~~~~~~ 229 (464)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 877777665
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00023 Score=54.15 Aligned_cols=100 Identities=12% Similarity=-0.037 Sum_probs=81.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-------------HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhh
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN-------------AITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 372 (464)
.+......+.+.|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..++.++++.+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n-- 88 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN-- 88 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh--
Confidence 4666777888999999999999999883 343 23888899999999999999999999976533
Q ss_pred hhcCCCCc-HHHH----HHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 373 KVRSSTPW-LETT----LSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 373 ~~~~~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
....+.|+ ...| .....++...|++++|+..|++..+
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 23345664 4567 8899999999999999999999875
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.94 E-value=8.2e-05 Score=57.88 Aligned_cols=114 Identities=15% Similarity=0.010 Sum_probs=72.6
Q ss_pred HhHHHHHHHHHHhcChhhHHHHHHHHHHhcc------CCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHH
Q 044770 200 EVSYCILATAHAVARLYTVAETYVEALEKSM------TGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYV 273 (464)
Q Consensus 200 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (464)
...+......+.+.|++++|+..|.+....- ..|+...+ ....+.....|.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~ 67 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-----------------------VELDRKNIPLYA 67 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------------HHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------------HHHHHHHHHHHH
Confidence 4456667777778888888888887765530 00110000 000112233466
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH
Q 044770 274 LAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339 (464)
Q Consensus 274 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 339 (464)
.+..+|.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+ +.|+.
T Consensus 68 nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~ 130 (162)
T 3rkv_A 68 NMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAA 130 (162)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCC
Confidence 77777778888888888888777642 34566777788888888888888888888777 34554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00011 Score=67.97 Aligned_cols=143 Identities=8% Similarity=-0.062 Sum_probs=78.1
Q ss_pred HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHh
Q 044770 200 EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAF 279 (464)
Q Consensus 200 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (464)
...|..+...+.+.|++++|+..|++..+......... .+...+ ........|..+..+|
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-------------~~~~~~-------~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS-------------EKESKA-------SESFLLAAFLNLAMCY 327 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC-------------HHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC-------------hHHHHH-------HHHHHHHHHHHHHHHH
Confidence 34566666677777777777777777765422111000 000000 0000122355666666
Q ss_pred hccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCChHHH
Q 044770 280 GRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN-AITYRHLALGCFKSNLVEEG 358 (464)
Q Consensus 280 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a 358 (464)
.+.|++++|...+++..+.. +.+...|..+..+|...|++++|+..|++.++. .|+ ...+..+..++...++.+++
T Consensus 328 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777666632 235566666777777777777777777777663 343 34455555556666666555
Q ss_pred H-HHHHHh
Q 044770 359 F-KALELG 365 (464)
Q Consensus 359 ~-~~~~~~ 365 (464)
. ..+..|
T Consensus 405 ~~~~~~~~ 412 (457)
T 1kt0_A 405 DRRIYANM 412 (457)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 4 344444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0001 Score=57.38 Aligned_cols=30 Identities=3% Similarity=-0.175 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHc
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVL 124 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 124 (464)
...+......+.+.|++++|+..|.+.+..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~ 40 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTR 40 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455667777788888888888888777663
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00014 Score=65.19 Aligned_cols=138 Identities=9% Similarity=-0.041 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIE 175 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (464)
..|..+...+.+.|++++|+..|++.++.- +... ...-.+...+.. +.+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~-----------------~~~~~~~~~~~~-~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR-----------------AAAEDADGAKLQ-PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH-----------------HHSCHHHHGGGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc-----------------cccChHHHHHHH-HHHHHHHHHHHHHH
Confidence 457778888899999999999998887621 0000 000001110000 12234455555555
Q ss_pred HccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHH
Q 044770 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLE 255 (464)
Q Consensus 176 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (464)
.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555432 1234455555555555566666655555555432 223444444445555554444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00015 Score=64.89 Aligned_cols=137 Identities=13% Similarity=-0.027 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc
Q 044770 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281 (464)
Q Consensus 202 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (464)
.+..+...+.+.|++++|+..|++..+.-.. . ..... .+......+.....|..+..+|.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~--~----------~~~~~-------~~~~~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--S----------RAAAE-------DADGAKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--H----------HHHSC-------HHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--C----------ccccC-------hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777788888888877776552100 0 00000 001111112223346666677777
Q ss_pred cCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCChHHHHH
Q 044770 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLVEEGFK 360 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~ 360 (464)
.|++++|...+++..+.. +.+...|..+..+|...|++++|+..|++..+. .| +...+..+...+...++.+++.+
T Consensus 286 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777632 235566777777777777777777777777663 33 44455555555555566555543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.82 E-value=8e-05 Score=65.95 Aligned_cols=146 Identities=10% Similarity=-0.020 Sum_probs=65.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (464)
.+..+...+.+.|++++|...|++.... .|+... +...++..++...+. ...+..+..++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3555666666777777777777776543 333221 112222332222111 124556666666
Q ss_pred hhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHH-HHhcCChhHHHH
Q 044770 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISV-YCKNGFIDKASG 325 (464)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~ 325 (464)
+.|++++|...++......+.+...+..+..+|...|++++|...|++..+.. +-+...+..+... ....+..+.+..
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777666666555556667777777777777777777777766532 1233344444443 233455666777
Q ss_pred HHHHHHh
Q 044770 326 LLKEMSM 332 (464)
Q Consensus 326 ~~~~m~~ 332 (464)
+|..|..
T Consensus 321 ~~~~~l~ 327 (338)
T 2if4_A 321 MYKGIFK 327 (338)
T ss_dssp -------
T ss_pred HHHHhhC
Confidence 7777765
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.79 E-value=2.7e-05 Score=68.98 Aligned_cols=130 Identities=6% Similarity=-0.049 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCch------------------hhHHHHHHHhcCCCCcccHHHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISY------------------LVFNRLIILNSSPGRRKTIPNILRQM 156 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~a~~~~~~~ 156 (464)
...+..+...+.+.|++++|+..|++.... .|+. ..|..+..++.+.|++++|...++..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555555555555666666655555543 1222 26777777788888888888888887
Q ss_pred HhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHH-HHhcChhhHHHHHHHHHHhc
Q 044770 157 KADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN-EVSYCILATA-HAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~ 229 (464)
++.. +.+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+.+...|..+...
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 7654 445667777888888888888888888887654 333 3344444443 23345566777777777654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00019 Score=66.50 Aligned_cols=132 Identities=5% Similarity=-0.113 Sum_probs=96.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhC---CCCc----cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHH
Q 044770 312 SVYCKNGFIDKASGLLKEMSMN---GCKP----NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETT 384 (464)
Q Consensus 312 ~~~~~~~~~~~a~~~~~~m~~~---g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~ 384 (464)
..+...|++++|..++++.++. -+-| ...+++.+..+|...|++++|..+++++++..........+-...++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456789999999999887652 1222 24678999999999999999999999998876543333333345679
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHH---cCCCCcHH----HHHHHHHHHHHcCC--ChhHHHHHHHhC
Q 044770 385 LSIIEIFAEKGDVGNAENLFEELKK---ANYTKYTF----VYNTLIKAYVKAKI--NDPNLLRRMILG 443 (464)
Q Consensus 385 ~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~----~~~~li~~~~~~g~--~a~~~~~~m~~~ 443 (464)
+.|...|...|++++|..++++..+ .-+.|+.. +.+.+-.++...|. .|..++.++++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998763 11224433 44555566655554 488888888763
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0011 Score=62.98 Aligned_cols=139 Identities=10% Similarity=-0.002 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC--CcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-ChhHHHHH
Q 044770 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG--RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH-NIEGLMKV 187 (464)
Q Consensus 111 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~ 187 (464)
++++++.++.+.+.. +-+..+|+.-..++.+.+ +++++.+.++.+.+.. +.+..+|+.-...+.+.| .++++++.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHH
Confidence 677777777777654 335566666666666666 4577777777777654 556666766666666666 67777777
Q ss_pred HHHHHhCCCCCcHhHHHHHHHHHHhc--------------ChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhh
Q 044770 188 YSDMKRSEVEPNEVSYCILATAHAVA--------------RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253 (464)
Q Consensus 188 ~~~m~~~~~~p~~~~~~~li~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (464)
++++.+..+. |...|+.....+.+. +.++++++.+++.... .+-+...|.-....+...++.++
T Consensus 167 ~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~-~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 167 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH-CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh-CCCCccHHHHHHHHHhcCCCccc
Confidence 7777765432 566666666555542 5567888888877765 33466777777666766665433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0013 Score=49.26 Aligned_cols=113 Identities=14% Similarity=0.082 Sum_probs=86.2
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChhH
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN----DHNIEG 183 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 183 (464)
.+++++|++.|++..+.| .|+ .. |...|...+.+++|.+.|+...+.| +...+..|...|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 457888899998888877 223 23 6677777777888888888888764 56667777777777 788899
Q ss_pred HHHHHHHHHhCCCCCcHhHHHHHHHHHHh----cChhhHHHHHHHHHHhccC
Q 044770 184 LMKVYSDMKRSEVEPNEVSYCILATAHAV----ARLYTVAETYVEALEKSMT 231 (464)
Q Consensus 184 a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~ 231 (464)
|...|++..+.| +...+..+...|.. .++.++|..+|++..+.|.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999998888764 55667777777777 7888888888888877653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0022 Score=60.85 Aligned_cols=139 Identities=6% Similarity=-0.102 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcC--hhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhc-ChhhHHHH
Q 044770 181 IEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR--LYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLA-KGKDLERI 257 (464)
Q Consensus 181 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~ 257 (464)
++++++.++.+.+.. +-+..+|+.-..++.+.+ +++++++.++++.+.. +.+..+|+.-..++...| .++++.+.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHH
Confidence 444444444444332 113334444333444444 3344444444444431 223334443333344444 34444444
Q ss_pred HHHhccCCCCchhhHHHHHHHhhc--------------cCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhH
Q 044770 258 WATVQELPNVRSKSYVLAIEAFGR--------------IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322 (464)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~--------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 322 (464)
++.+.+..+.+...|+.....+.+ .+.++++.+.+...... .+-|...|+-.-..+.+.++.++
T Consensus 167 ~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~-~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH-CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh-CCCCccHHHHHHHHHhcCCCccc
Confidence 444444444444444443333322 24567788888777763 33467778777777766666433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00065 Score=49.06 Aligned_cols=81 Identities=14% Similarity=0.011 Sum_probs=55.1
Q ss_pred ccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHH
Q 044770 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
+.|...|++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35666677766643 4456667777777777777777777777776653 224556677777777777777777777776
Q ss_pred Hhc
Q 044770 227 EKS 229 (464)
Q Consensus 227 ~~~ 229 (464)
...
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.61 E-value=8.8e-05 Score=53.21 Aligned_cols=91 Identities=10% Similarity=-0.028 Sum_probs=65.7
Q ss_pred hhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-------HHHH
Q 044770 270 KSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN-------AITY 342 (464)
Q Consensus 270 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-------~~~~ 342 (464)
..+..+...+...|++++|...|++..+. .+.+...|..+..++...|++++|+..+++..+. .|+ ...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHH
Confidence 34667778888889999999999888874 3346778888888899999999999999988874 454 4445
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 044770 343 RHLALGCFKSNLVEEGFKALE 363 (464)
Q Consensus 343 ~~ll~~~~~~~~~~~a~~~~~ 363 (464)
..+..++...|+.+.|...++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 555555666666655544433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00031 Score=53.31 Aligned_cols=114 Identities=5% Similarity=-0.047 Sum_probs=84.2
Q ss_pred HHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcCh----------HHHHHHhhhcCCCCC-chhHHHHHHHH
Q 044770 36 LRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGI----------SQGEKLFCCIPKDYQ-NELLYNNLVIA 104 (464)
Q Consensus 36 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~-~~~~~~~li~~ 104 (464)
..+.+.+++|++.++...+.. +.+...|..+..++...+++ ++|+..|++.....| +..+|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 346678899999999998854 44777888888888888775 488888888877644 56788889988
Q ss_pred HHhhC-----------cHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhC
Q 044770 105 CLDKG-----------VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD 159 (464)
Q Consensus 105 ~~~~~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (464)
|...| ++++|++.|++.++. .|+...|...+... ++|.+++-.+...
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~------~ka~el~~~~~~~ 147 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH------HhCHhccCccccc
Confidence 88764 789999999888884 57766666665543 3455555444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00088 Score=48.32 Aligned_cols=62 Identities=6% Similarity=-0.149 Sum_probs=26.6
Q ss_pred hhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 044770 269 SKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMS 331 (464)
Q Consensus 269 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 331 (464)
...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444444444321 1223344444444444444444444444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0047 Score=46.26 Aligned_cols=85 Identities=7% Similarity=-0.044 Sum_probs=52.5
Q ss_pred HHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 044770 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK----NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350 (464)
Q Consensus 275 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 350 (464)
+...|...+.+++|.+.|++..+.+ ++..+..+...|.. .+++++|..+|++..+.| +...+..+...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 4455555555666666666666643 44456666666665 566777777777766654 3445555555555
Q ss_pred h----cCChHHHHHHHHHh
Q 044770 351 K----SNLVEEGFKALELG 365 (464)
Q Consensus 351 ~----~~~~~~a~~~~~~~ 365 (464)
. .++.++|..+|+.+
T Consensus 105 ~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 5 56777777777766
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00059 Score=48.70 Aligned_cols=64 Identities=14% Similarity=0.012 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhc
Q 044770 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 229 (464)
...+..+...+...|++++|...|++..+.. +.+...|..+..++.+.|++++|+..+++....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4455556666666666666666666665542 224555666666666666666666666666553
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00041 Score=52.61 Aligned_cols=109 Identities=14% Similarity=0.012 Sum_probs=64.8
Q ss_pred HhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHH
Q 044770 211 AVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEE 290 (464)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 290 (464)
.+.+.+++|...++...+.. +.+...+..+..++...++++.+...+ +.+++|+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al------------------------~~~~eAi~ 67 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAK------------------------QMIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHH------------------------HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhH------------------------hHHHHHHH
Confidence 34555666666666665542 334555555555555555444222211 12457777
Q ss_pred HHHHHHhccccCChhhHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCccHHHHHHHHH
Q 044770 291 LWLEMQSVKQLKATEQYNSVISVYCKN-----------GFIDKASGLLKEMSMNGCKPNAITYRHLAL 347 (464)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 347 (464)
.|++..+.. +.+...|..+..+|... |++++|+..|++.++ +.|+...|...+.
T Consensus 68 ~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 68 KFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 777777633 22455677777777765 478888888888887 5677665554444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00083 Score=61.15 Aligned_cols=93 Identities=6% Similarity=-0.099 Sum_probs=72.6
Q ss_pred hcCChhHHHHHHHHHHhC---CCCcc----HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHH
Q 044770 316 KNGFIDKASGLLKEMSMN---GCKPN----AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSI 387 (464)
Q Consensus 316 ~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l 387 (464)
..|++++|..++++.++. -+-|+ ..+++.+..+|...|++++|..+++++++........ ..| ...+++.|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV-YSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHH
Confidence 357889999998887652 12232 3678899999999999999999999998876542222 344 45669999
Q ss_pred HHHHHhcCChhhHHHHHHHHHH
Q 044770 388 IEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 388 i~~~~~~g~~~~A~~~~~~m~~ 409 (464)
...|...|++++|..++++..+
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0013 Score=60.04 Aligned_cols=99 Identities=10% Similarity=-0.034 Sum_probs=77.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC---CCcc----HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cH
Q 044770 310 VISVYCKNGFIDKASGLLKEMSMNG---CKPN----AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WL 381 (464)
Q Consensus 310 li~~~~~~~~~~~a~~~~~~m~~~g---~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~ 381 (464)
.+..+.+.|++++|..++++..+.. +.|+ ..+++.+..+|...|++++|..+++++++....... ...| ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg-~~Hp~~a 371 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP-GSHPVRG 371 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC-SSCHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC-CCChHHH
Confidence 3555667899999999999887632 2232 367889999999999999999999999887654222 3334 45
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 382 ETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
.+++.|...|...|++++|..++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6699999999999999999999998764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0019 Score=43.93 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhc
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 229 (464)
..+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++....
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344445555555555555555555554432 123444455555555555555555555555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.011 Score=51.78 Aligned_cols=72 Identities=7% Similarity=-0.014 Sum_probs=37.0
Q ss_pred CchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHH
Q 044770 128 ISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSY 203 (464)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 203 (464)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...||
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 344445444444444455555555555555543 44444545555555556666666655555443 3444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0018 Score=44.12 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=30.0
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4444444555555555555555554421 22344455555555555555555555555554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0014 Score=45.91 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=36.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhH
Q 044770 303 ATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGM 366 (464)
Q Consensus 303 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 366 (464)
+...+..+...|...|++++|+..|++..+.... +...|..+..++...|++++|...+++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555666666666666666666666553211 34455556666666666666666666664
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.012 Score=51.46 Aligned_cols=142 Identities=11% Similarity=-0.045 Sum_probs=80.1
Q ss_pred CCcHhHHHHHHHHHH--hc---ChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHh---hc-----ChhhHHHHHHHh--
Q 044770 197 EPNEVSYCILATAHA--VA---RLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY---LA-----KGKDLERIWATV-- 261 (464)
Q Consensus 197 ~p~~~~~~~li~~~~--~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~-----~~~~a~~~~~~~-- 261 (464)
+.+...|...+++.. .. .+..+|..+|++..+.. +.....+..+..++.. .+ ........++..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 445666666665533 22 23466777777776642 2223334333333321 01 011111111111
Q ss_pred ccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHH
Q 044770 262 QELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAIT 341 (464)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 341 (464)
....+.++..+..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|.+... +.|...|
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcCh
Confidence 12335556666666666666788888888888877755 5666666667777778888888888877777 4566666
Q ss_pred HH
Q 044770 342 YR 343 (464)
Q Consensus 342 ~~ 343 (464)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0044 Score=56.49 Aligned_cols=96 Identities=9% Similarity=0.094 Sum_probs=73.9
Q ss_pred HHHhhccCChHHHHHHHHHHHhcc---ccC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CC-CCcc-HHH
Q 044770 276 IEAFGRIAQVSRAEELWLEMQSVK---QLK----ATEQYNSVISVYCKNGFIDKASGLLKEMSM-----NG-CKPN-AIT 341 (464)
Q Consensus 276 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g-~~p~-~~~ 341 (464)
+..+.+.|++++|..++++..+.. ..| ...+++.+..+|...|++++|+.++++.++ .| --|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667789999999998887531 112 245788899999999999999999988764 22 2233 367
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHHHhh
Q 044770 342 YRHLALGCFKSNLVEEGFKALELGMKLITT 371 (464)
Q Consensus 342 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 371 (464)
++.+...|...|++++|..+++++++....
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999877554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0028 Score=44.32 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=9.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHH
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEM 330 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m 330 (464)
.|..+..+|...|++++|...|++.
T Consensus 43 a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 43 TYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333344444444444433333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.033 Score=40.21 Aligned_cols=66 Identities=11% Similarity=-0.068 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 044770 340 ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413 (464)
Q Consensus 340 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 413 (464)
..+...+......|+-++-.+++...+ .+..|++...-.+..+|.+.|+..+|.+++.+..+.|++
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l--------~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREIL--------KNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHh--------ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 344455556666666666666666631 345556666667777777777777777777777777753
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0045 Score=56.33 Aligned_cols=90 Identities=13% Similarity=-0.040 Sum_probs=70.0
Q ss_pred ccCChHHHHHHHHHHHhc---cccC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CC-CCcc-HHHHHHHH
Q 044770 281 RIAQVSRAEELWLEMQSV---KQLK----ATEQYNSVISVYCKNGFIDKASGLLKEMSM-----NG-CKPN-AITYRHLA 346 (464)
Q Consensus 281 ~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g-~~p~-~~~~~~ll 346 (464)
..|++++|..++++..+. -..| ...+++.+..+|...|++++|..++++.++ .| --|+ ..+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999876652 1222 245789999999999999999999988764 22 2233 36788999
Q ss_pred HHHHhcCChHHHHHHHHHhHHHHh
Q 044770 347 LGCFKSNLVEEGFKALELGMKLIT 370 (464)
Q Consensus 347 ~~~~~~~~~~~a~~~~~~~~~~~~ 370 (464)
..|...|++++|..+++++++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999987654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00011 Score=65.55 Aligned_cols=245 Identities=11% Similarity=0.105 Sum_probs=162.8
Q ss_pred CchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHh
Q 044770 61 KELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILN 140 (464)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 140 (464)
.+.+|+.|..+....+++.+|++.|-+.. |+..|..+|.+..+.|.+++-+..+...++.. -+...=+.|+-+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD----DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 34567778888887787777776665543 45566777888888888888887776655542 2334445677788
Q ss_pred cCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCC--------------------CCCcH
Q 044770 141 SSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSE--------------------VEPNE 200 (464)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------------------~~p~~ 200 (464)
++.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+.... -.-++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 88887766554432 4555555666677777777777666665542211 13367
Q ss_pred hHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhh
Q 044770 201 VSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFG 280 (464)
Q Consensus 201 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (464)
.||..+-.+|...+++.-|...--.+.-+ ++ -...++..|-..|.+++.+.+++.-..........|+-|.-.|+
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYs 274 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 274 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 88999999999999988776554444332 21 22345667888899999999999888777778888999888888
Q ss_pred ccCChHHHHHHHHHHHhccccC-------ChhhHHHHHHHHHhcCChhHHH
Q 044770 281 RIAQVSRAEELWLEMQSVKQLK-------ATEQYNSVISVYCKNGFIDKAS 324 (464)
Q Consensus 281 ~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~ 324 (464)
+- ++++.++.++....+-..| ....|.-++-.|++-.+++.|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 75 4555555554433221112 3446778888888777777654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.087 Score=52.66 Aligned_cols=154 Identities=11% Similarity=-0.015 Sum_probs=86.4
Q ss_pred HHHccCChhHHHH-HHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChh
Q 044770 174 IEANDHNIEGLMK-VYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGK 252 (464)
Q Consensus 174 ~~~~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 252 (464)
.....+++++|.+ ++..+ |+......++..+.+.|.++.|.++.+.- ..-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHH
Confidence 3345677777765 44111 11222356666677777777777654211 01123345667777
Q ss_pred hHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 253 DLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
.|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.+ |..+...+...|+.+....+-+....
T Consensus 670 ~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 670 LARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 777765433 2345677888888888888888888877655 45555555556666655555444444
Q ss_pred CCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 333 NGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 333 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
.|- ++....++.+.|++++|++++.++
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 331 122333344556666665555444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.053 Score=54.19 Aligned_cols=27 Identities=7% Similarity=-0.162 Sum_probs=13.3
Q ss_pred hhhHHHHHHHhcCCCCcccHHHHHHHH
Q 044770 130 YLVFNRLIILNSSPGRRKTIPNILRQM 156 (464)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 156 (464)
...|..+...+.+.++++.|.+.|..+
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344445555555555555555555444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.24 Score=41.55 Aligned_cols=124 Identities=10% Similarity=0.030 Sum_probs=78.5
Q ss_pred cChHHHHHHhhhcCCCCCchhHHHHHHHH-HHhh--C------cHHHHHHHHHHHHHcCCCCc---hhhHHHHHHHhcC-
Q 044770 76 HGISQGEKLFCCIPKDYQNELLYNNLVIA-CLDK--G------VIKLSLEYMKKMRVLGHSIS---YLVFNRLIILNSS- 142 (464)
Q Consensus 76 g~~~~a~~~~~~~~~~~~~~~~~~~li~~-~~~~--~------~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~- 142 (464)
++..+..+.+.+.....+....|..++.+ +... | ....|...+++.++. .|+ -..|..+...|.+
T Consensus 135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhC
Confidence 33344445555554433445566666543 2332 2 246677777777764 344 4567777777777
Q ss_pred ----CCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-CChhHHHHHHHHHHhCCCC--CcHh
Q 044770 143 ----PGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAND-HNIEGLMKVYSDMKRSEVE--PNEV 201 (464)
Q Consensus 143 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~--p~~~ 201 (464)
.|+.++|.+.|++.++.+-.-+..++....+.++.. |+.+++.+.+++..+.... |+..
T Consensus 213 Pp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence 488888888888888753112366777777777774 8888888888888876544 4443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.017 Score=39.90 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=44.1
Q ss_pred HHHHhhccCChHHHHHHHHHHHhccccCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044770 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATE-QYNSVISVYCKNGFIDKASGLLKEMSMN 333 (464)
Q Consensus 275 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~ 333 (464)
....+...|++++|...|+...+.. +.+.. .|..+..+|...|++++|...|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4556677888888888888887743 33556 7778888888888888888888888874
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.069 Score=37.35 Aligned_cols=77 Identities=12% Similarity=-0.019 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHH
Q 044770 338 NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417 (464)
Q Consensus 338 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 417 (464)
+..-...+...+...++++.|...++.+++.... ....-.+....+..|..+|.+.|+++.|...+++..+.. |+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~-~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~--P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDE-GEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-TCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhc-cCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCH
Confidence 4455567788889999999999999999765432 111223466788999999999999999999999998753 5543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.37 Score=37.09 Aligned_cols=48 Identities=8% Similarity=0.122 Sum_probs=30.6
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHH
Q 044770 173 KIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
....+.|+++.|.++.+++ -+...|..+.......|+++-|.+.|.+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445567777777666655 15566777777777777777776666654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.047 Score=37.29 Aligned_cols=48 Identities=6% Similarity=0.059 Sum_probs=23.5
Q ss_pred cccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 044770 146 RKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRS 194 (464)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 194 (464)
.++|..++++.++.. +-+......+...+.+.|++++|...|+.+.+.
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555555554433 333344444445555555555555555555544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.36 Score=37.15 Aligned_cols=99 Identities=14% Similarity=0.021 Sum_probs=49.5
Q ss_pred HHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHH
Q 044770 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289 (464)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 289 (464)
..+.|+++.|.++.+.+ .+...|..+.......|+.+-|++.|..... +..+.-.|.-.|+.+.-.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHH
Confidence 34556666666665544 2345555555555555555555555555433 344444444455544444
Q ss_pred HHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHH
Q 044770 290 ELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLK 328 (464)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 328 (464)
++-+.....| -++.....+...|+++++.++|.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 3333333222 24444444455555555555553
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.078 Score=36.36 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=24.9
Q ss_pred HhhcChhhHHHHHHHhccCCCCchh-hHHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 246 GYLAKGKDLERIWATVQELPNVRSK-SYVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
...|++++|...++......+.+.. .+..+..+|...|++++|...|++..+
T Consensus 11 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344444444444444333333333 444555555555555555555555554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.39 Score=34.81 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 305 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
......++.+...|+-+.-.+++.++.. +.+|++.....+..+|.+.|+..+|.+++.++
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 3444445555555555555555555332 13445555555555555555555555555555
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.089 Score=39.41 Aligned_cols=81 Identities=11% Similarity=0.039 Sum_probs=49.7
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHhhccC---ChHHHHHHHHHHHhccccC--ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 044770 255 ERIWATVQELPNVRSKSYVLAIEAFGRIA---QVSRAEELWLEMQSVKQLK--ATEQYNSVISVYCKNGFIDKASGLLKE 329 (464)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~ 329 (464)
.+.|.......+++..+...+..++++.+ +.+++..+|+...+.. .| ....+-.+.-+|.+.|++++|.+.++.
T Consensus 18 ~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 18 EKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 33333333333455555556666666666 5557777777777643 12 344555566677788888888888887
Q ss_pred HHhCCCCcc
Q 044770 330 MSMNGCKPN 338 (464)
Q Consensus 330 m~~~g~~p~ 338 (464)
+.+ +.|+
T Consensus 97 lL~--ieP~ 103 (152)
T 1pc2_A 97 LLQ--TEPQ 103 (152)
T ss_dssp HHH--HCTT
T ss_pred HHh--cCCC
Confidence 777 4564
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.11 Score=35.30 Aligned_cols=28 Identities=4% Similarity=-0.219 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 305 EQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 305 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
.....+...+.+.|++++|+..|+++.+
T Consensus 44 rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 44 AALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3333334444444444444444444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.61 E-value=2.1 Score=42.69 Aligned_cols=255 Identities=10% Similarity=0.003 Sum_probs=121.2
Q ss_pred HHhhcChHHHHHHhhhcCCC----CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCC-------CCchhhHHHHHHHh
Q 044770 72 TIKNHGISQGEKLFCCIPKD----YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGH-------SISYLVFNRLIILN 140 (464)
Q Consensus 72 ~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------~~~~~~~~~l~~~~ 140 (464)
....|+.++++.+++..... .+....-..+.-+....|..+++..++.......- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44566777777777765541 11122223333444455554566666655544211 01111122222223
Q ss_pred cCCCC-cccHHHHHHHHHhCCCCCChhhHH--HHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHH--HHHhcCh
Q 044770 141 SSPGR-RKTIPNILRQMKADKVAPHVSTFH--ILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILAT--AHAVARL 215 (464)
Q Consensus 141 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~--~~~~~~~ 215 (464)
+-.|. -+++.+.+..+.... .+...... +|...+.-.|+.+....++..+.+. . +..+...+.- ++...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--Q-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--S-CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--C-cHHHHHHHHHHHHhhhCCC
Confidence 22332 234555555555421 11111111 2233344556666666666666543 1 2222222222 3445677
Q ss_pred hhHHHHHHHHHHhccCCCChhh--HHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHH
Q 044770 216 YTVAETYVEALEKSMTGNNWST--LDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWL 293 (464)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 293 (464)
.+.+..+++.+... ..|.... ...+.-+|+..|+.....+++..+......+......+.-++...|+.+.+.++++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 77777777766543 1121111 12233456666777666667777766544443333333334445566666667766
Q ss_pred HHHhccccCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 044770 294 EMQSVKQLKATEQYNSVISVYCKNGFI-DKASGLLKEMSM 332 (464)
Q Consensus 294 ~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~ 332 (464)
.+.+.+ .|.+..-..+..+....|.. .+++.++..+..
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 555532 23433333344444444443 467777777764
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.18 Score=35.19 Aligned_cols=66 Identities=14% Similarity=-0.005 Sum_probs=43.3
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhcc------ccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVK------QLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 339 (464)
+..+...+...|+++.|...|+...+.. ..+....+..+..++.+.|+++.|+..+++..+ +.|+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 4456666667777777777776655431 122445677777778888888888888887776 44543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.12 Score=38.66 Aligned_cols=78 Identities=15% Similarity=0.076 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccC---ChhHHHHHHHHHHhCCCCC--cHhHHHHHHHHHHhcChhhHHHHHH
Q 044770 149 IPNILRQMKADKVAPHVSTFHILMKIEANDH---NIEGLMKVYSDMKRSEVEP--NEVSYCILATAHAVARLYTVAETYV 223 (464)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~ 223 (464)
+.+-|.+..+.| +++..+...+..++++.+ +.+++..+|++..+.. .| ....+-.+.-++.+.|++++|.+++
T Consensus 17 ~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 333444444433 344444444555555554 3445555555555432 12 1233333444455555555555555
Q ss_pred HHHHh
Q 044770 224 EALEK 228 (464)
Q Consensus 224 ~~~~~ 228 (464)
+.+.+
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55555
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.09 E-value=1.6e-05 Score=70.85 Aligned_cols=264 Identities=12% Similarity=0.079 Sum_probs=156.8
Q ss_pred chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHH
Q 044770 94 NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMK 173 (464)
Q Consensus 94 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (464)
....|..|..+....++..+|++.| ++. -|...|..++.+..+.|.+++-.+.+....+.. .+...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 3456777777777777666666554 222 255667777777777777777777766555442 23333346677
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhh
Q 044770 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253 (464)
Q Consensus 174 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (464)
+|++.++..+..+++ -.||..-...+..-|...|.++.|.-+|..+.. |..|...+.+.|++..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 777777765533222 135555556666666667777666655543322 2223333445555544
Q ss_pred HHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044770 254 LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333 (464)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 333 (464)
|.+.- ....++.+|-.+-.+|...+.+.-|...--.+.- .......++.-|-..|.+++-+.+++.-...
T Consensus 189 AVdaA-----rKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 189 AVDGA-----RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp STTTT-----TTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHH-----HhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 43211 2234555688888888888888777655444432 1223444666778888888888888877642
Q ss_pred CCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHH
Q 044770 334 GCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEE 406 (464)
Q Consensus 334 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (464)
-+.....|+-|.-.|++- ++++..+.++.. ..+.|+. -+|++|....-|.++.-++..
T Consensus 259 -ErAHmGmFTELaILYsKY-~PeKlmEHlklf----------~sriNip---KviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 259 -ERAHMGMFTELAILYSKF-KPQKMREHLELF----------WSRVNIP---KVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp -TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTS----------SSSSCCT---TTHHHHTTTTCHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHhc-CHHHHHHHHHHH----------HHhccHH---HHHHHHHHHhhHHHHHHHHhc
Confidence 245667777777777664 445544444333 2233332 578888888888888777654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.46 Score=35.22 Aligned_cols=64 Identities=14% Similarity=0.050 Sum_probs=45.6
Q ss_pred cCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHH
Q 044770 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLAL 347 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 347 (464)
.+++++|.++|+.+.+.+-.- ...|.....--.++|+...|.+++...+..+.+|. ..+.+.++
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~ 136 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALR 136 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHH
Confidence 478899999999987653333 55566666666789999999999999998776643 33444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.13 Score=43.10 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=73.8
Q ss_pred hHHHHHHhhhcCCCCCc---hhHHHHHHHHHHh-----hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCC-CCccc
Q 044770 78 ISQGEKLFCCIPKDYQN---ELLYNNLVIACLD-----KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSP-GRRKT 148 (464)
Q Consensus 78 ~~~a~~~~~~~~~~~~~---~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 148 (464)
...|+..+++..+..|+ -..|..+...|.. .|+.++|.+.|++.++.+..-+..++......++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45777777777666554 5689999999999 599999999999999965322478888888988885 99999
Q ss_pred HHHHHHHHHhCCCC--CChhhHHHH
Q 044770 149 IPNILRQMKADKVA--PHVSTFHIL 171 (464)
Q Consensus 149 a~~~~~~~~~~~~~--~~~~~~~~l 171 (464)
+.+.+++.++.... |+....+.+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHHH
Confidence 99999999987655 665544433
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.26 E-value=4.9 Score=40.13 Aligned_cols=172 Identities=15% Similarity=0.083 Sum_probs=83.6
Q ss_pred HHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHH---HHHHHHHhcCChh
Q 044770 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYN---SVISVYCKNGFID 321 (464)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~ 321 (464)
+.-.|+.+....++..+.+....+..-+..+.-++...|+.+.+..+++.+... ..|.. -|. ++..+|+..|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~v-Rygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLL-RYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHH-HHHHHHHHHHHTTTSCCHH
T ss_pred hcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHH-HHHHHHHHHHHhcCCCCHH
Confidence 334455555566666555433222222233333344566777777776666652 11221 222 2334555666765
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCCh-hhH
Q 044770 322 KASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDV-GNA 400 (464)
Q Consensus 322 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A 400 (464)
....++..+... ...+......+.-++...|+.+.+.++++.+ . ....|.+..-..+.-+....|.. .++
T Consensus 578 aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L-------~-~~~d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 578 AVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLL-------S-KSHNAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp HHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG-------G-GCSCHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred HHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHH-------H-hcCCHHHHHHHHHHHHHhccCCCcHHH
Confidence 555577766653 1222222222223344455655555555544 1 23345555444555555555554 466
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHcC
Q 044770 401 ENLFEELKKANYTKYTFVYNTLIKAYVKAK 430 (464)
Q Consensus 401 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 430 (464)
..++..+... +|..+-...+.++..-|
T Consensus 649 id~L~~L~~D---~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 649 IDVLDPLTKD---PVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHHHHHHHTC---SSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHccC---CCHHHHHHHHHHHHHHh
Confidence 7777777653 44444444444444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.07 E-value=1.3 Score=32.91 Aligned_cols=112 Identities=10% Similarity=0.064 Sum_probs=72.2
Q ss_pred ccChhchHHHHHHHHhhcch------HHHHHHHHHHHHcCCCCCCch-hHHHHHH------HHHhhcChHHHHHHhhhcC
Q 044770 23 PVHRGEIFHSINRLRKLQLN------KRALEVMEWVIRERPYRPKEL-DYSYLLE------FTIKNHGISQGEKLFCCIP 89 (464)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~a~~~~~~~~ 89 (464)
|-|.+++...+..+-+.|++ +..+++|+.+... ++|+.. .|...+. .+...+++++|.++|+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45677777788888878888 8888899988874 345432 1111111 1224478888888887764
Q ss_pred CC-CCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 044770 90 KD-YQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLI 137 (464)
Q Consensus 90 ~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 137 (464)
.. ..=...|......-.+.|++..|.+++...+..+..|. ..+...+
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~ 135 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIAL 135 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHH
Confidence 33 11156677777777788888888888888888765543 3344333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.53 E-value=0.54 Score=33.82 Aligned_cols=60 Identities=8% Similarity=-0.114 Sum_probs=26.6
Q ss_pred HHHHHHhhccCChHH---HHHHHHHHHhcccc-CChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 273 VLAIEAFGRIAQVSR---AEELWLEMQSVKQL-KATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 273 ~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
..+..++.+..+... +..+++.+...+.+ -.....-.+.-++.+.|++++|.+.++.+++
T Consensus 39 F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 39 FEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333444444443333 44455544442211 1222333344455555555555555555555
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.70 E-value=1.5 Score=31.58 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=64.1
Q ss_pred HHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhH---HHHHHHHHHhCCCCc--cHHHHHHHHHHHHh
Q 044770 277 EAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK---ASGLLKEMSMNGCKP--NAITYRHLALGCFK 351 (464)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~ 351 (464)
+..........+.+-|......+. ++..+--.+..++++...... ++.++.+..+.+ .| .......+.-++.+
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHH
Confidence 333334455666667766655443 677777778888998887666 899999988864 24 33445566778999
Q ss_pred cCChHHHHHHHHHhHH
Q 044770 352 SNLVEEGFKALELGMK 367 (464)
Q Consensus 352 ~~~~~~a~~~~~~~~~ 367 (464)
.|++++|.++++.+++
T Consensus 87 lg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQ 102 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999999999953
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=7.3 Score=37.14 Aligned_cols=271 Identities=6% Similarity=-0.054 Sum_probs=120.6
Q ss_pred ChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHH
Q 044770 77 GISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQM 156 (464)
Q Consensus 77 ~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 156 (464)
..++....+++.+..+.....-+..+..+.+.+++...+..+.. .+.+...-.....+....|+..+|......+
T Consensus 54 ~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l 128 (618)
T 1qsa_A 54 PAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL 128 (618)
T ss_dssp CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 45566666666655422333344555566667777666664432 2334444445555566666655555555554
Q ss_pred HhCCCCCChhhHHHHHHHHHccCChhH--HHHHHHHHHhCC-----------CCCcHhHH-HHHHHHHHhcChhhHHHHH
Q 044770 157 KADKVAPHVSTFHILMKIEANDHNIEG--LMKVYSDMKRSE-----------VEPNEVSY-CILATAHAVARLYTVAETY 222 (464)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~m~~~~-----------~~p~~~~~-~~li~~~~~~~~~~~a~~~ 222 (464)
=..| ......++.++..+.+.|.+.. ...=++.+...| +.++...+ ..++.... ++..+...
T Consensus 129 W~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~ 204 (618)
T 1qsa_A 129 WLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTF 204 (618)
T ss_dssp HSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHH
T ss_pred HhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHH
Confidence 4443 3344455555655555444332 122222222221 11221111 11111111 11111111
Q ss_pred HHHHHhccCCCChhhHHHH---HHHHHhhcChhhHHHHHHHhccCCCCchhh----HHHHHHHhhccCChHHHHHHHHHH
Q 044770 223 VEALEKSMTGNNWSTLDVL---IILYGYLAKGKDLERIWATVQELPNVRSKS----YVLAIEAFGRIAQVSRAEELWLEM 295 (464)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~ 295 (464)
... ..++...-..+ +.-+.+ .+.+.|...+.........+... ...+...+...+...++...+...
T Consensus 205 ~~~-----~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~ 278 (618)
T 1qsa_A 205 ART-----TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDA 278 (618)
T ss_dssp HHH-----SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHH
T ss_pred Hhc-----cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc
Confidence 110 12222211111 222222 25667777776665432222222 222333334444344555555554
Q ss_pred HhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 296 QSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 296 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
.... .+.....-.+....+.|+++.|...|..|..... ......--+..+....|+.++|..+|+.+
T Consensus 279 ~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 279 IMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQL 345 (618)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3322 2222222333334456777777777777655211 12333344555666677777777777776
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.58 E-value=0.4 Score=36.28 Aligned_cols=70 Identities=7% Similarity=0.067 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhh-----------------cCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 044770 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKV-----------------RSSTPWLETTLSIIEIFAEKGDVGNAENLF 404 (464)
Q Consensus 342 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (464)
+..+..++...+++.+|...|+.+++......+ ....++...---+..+|.+.|++++|+.++
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~L 145 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAIL 145 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 344445555556666666555555443221100 012233444445788899999999999998
Q ss_pred HHHHHcC
Q 044770 405 EELKKAN 411 (464)
Q Consensus 405 ~~m~~~~ 411 (464)
+.+....
T Consensus 146 e~Ip~k~ 152 (167)
T 3ffl_A 146 DGIPSRQ 152 (167)
T ss_dssp HTSCGGG
T ss_pred hcCCchh
Confidence 8776543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.68 E-value=14 Score=38.41 Aligned_cols=86 Identities=6% Similarity=-0.055 Sum_probs=57.7
Q ss_pred hhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCC----hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHH
Q 044770 131 LVFNRLIILNSSPGRRKTIPNILRQMKADKVAPH----VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCIL 206 (464)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 206 (464)
.-|..++..+-+.+.++.+.++-...++..-+.+ ...|..+.+++...|++++|...+-.+.....+ ......+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 3467788888888888888877766665321111 125778888888999999998888877655333 3456667
Q ss_pred HHHHHhcChhhH
Q 044770 207 ATAHAVARLYTV 218 (464)
Q Consensus 207 i~~~~~~~~~~~ 218 (464)
+...+..|..+.
T Consensus 978 V~~lce~~~~~~ 989 (1139)
T 4fhn_B 978 VNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHhCCChhh
Confidence 766666665443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.46 E-value=0.77 Score=31.17 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHh
Q 044770 183 GLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 183 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 228 (464)
+..+-++.+....+.|++....+.+++|-+.+++..|.++++-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444555555555555555555555555555554443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.27 E-value=8.5 Score=35.05 Aligned_cols=100 Identities=13% Similarity=0.041 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh--CCCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcH
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMSM--NGCKPN---AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL 381 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~ 381 (464)
...|...|...|++.+|..++.++.. .|..+. ...+...++.|...+++..|..++..+.... ......|+.
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~---~~~~~~~~l 216 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT---FKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HHSSCCHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh---cccCCcHHH
Confidence 34577778888999999999888764 232222 2356667788999999999999998873211 122233332
Q ss_pred --HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 382 --ETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 382 --~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
..|...+..+...+++.+|.+.|.++.+
T Consensus 217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4467788888889999999888877754
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.06 E-value=1.4 Score=42.81 Aligned_cols=128 Identities=14% Similarity=0.117 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhhCc-HHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCC-cccHHHHHHHHHhC------CCCC-Ch--
Q 044770 97 LYNNLVIACLDKGV-IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGR-RKTIPNILRQMKAD------KVAP-HV-- 165 (464)
Q Consensus 97 ~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~-- 165 (464)
.-..++..+...++ .+.|+.+|+++.......+......++..+...++ --+|.+++.+..+. ..++ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34455555555666 57788899888876422222223334444433332 22344444444321 1111 11
Q ss_pred --------hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHHhcChhhHHHHHHHHH
Q 044770 166 --------STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPN-EVSYCILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 166 --------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
...+.-.+.+...|+++-|+++-++.... .|+ -.+|..|..+|...|+++.|+-.+..+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222244566789999999999888765 454 678999999999999999998888776
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.41 E-value=1.1 Score=43.53 Aligned_cols=125 Identities=10% Similarity=-0.057 Sum_probs=76.7
Q ss_pred HHHHHHHccCC-hhHHHHHHHHHHhCCCCCcHhHH--HHHHHHHHhcC-hhhHHHHHHHHHHhc------cCCC-Chh--
Q 044770 170 ILMKIEANDHN-IEGLMKVYSDMKRSEVEPNEVSY--CILATAHAVAR-LYTVAETYVEALEKS------MTGN-NWS-- 236 (464)
Q Consensus 170 ~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~~-- 236 (464)
.++..+...++ .+.|..+|+++.+. .|...++ ..++..+.+.+ +--+|.+++.+..+. ..++ +..
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 44444444555 57788899988776 3433332 22333322222 223455555444321 1111 110
Q ss_pred --------hHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHH
Q 044770 237 --------TLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296 (464)
Q Consensus 237 --------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 296 (464)
....=...+...|+++.|.++-++.....+.+-.+|..|..+|...|+++.|+-.+..+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 111113445667889999999998888888888889999999999999999998888764
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.95 E-value=11 Score=34.25 Aligned_cols=153 Identities=12% Similarity=-0.004 Sum_probs=85.0
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhccccCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCccH--HH
Q 044770 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKA-----TEQYNSVISVYCKNGFIDKASGLLKEMSM----NGCKPNA--IT 341 (464)
Q Consensus 273 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~--~~ 341 (464)
..|...|...|++.+|.+++..+...-...+ ...+...+..|...+++..|..++..... ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4567777788888888888887764221111 33566667778888888888888877642 2222322 33
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcH---HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHH
Q 044770 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWL---ETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFV 418 (464)
Q Consensus 342 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 418 (464)
+...+..+...+++.+|...|.++.+.... ...|.. ..+..++.... .+....-..++........-++...
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~----~~d~~~~~~~L~~~v~~~iL-a~~~~~~~~ll~~~~~~~~~~~l~~ 295 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAI----KSDEAKWKPVLSHIVYFLVL-SPYGNLQNDLIHKIQNDNNLKKLES 295 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHHHH-SSCSSTTHHHHHSHHHHSSCHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccc----cCCHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHhhcccccccHH
Confidence 455556667788888888888777543211 111111 11122222222 2222222333333333333356778
Q ss_pred HHHHHHHHHHcC
Q 044770 419 YNTLIKAYVKAK 430 (464)
Q Consensus 419 ~~~li~~~~~~g 430 (464)
|..++.+|....
T Consensus 296 ~~~L~k~f~~~~ 307 (445)
T 4b4t_P 296 QESLVKLFTTNE 307 (445)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhch
Confidence 888888887653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.68 E-value=1 Score=40.20 Aligned_cols=66 Identities=11% Similarity=0.113 Sum_probs=34.9
Q ss_pred HHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh-----CCCCCcHhH
Q 044770 136 LIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKR-----SEVEPNEVS 202 (464)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~ 202 (464)
++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|+...+ .|+.|+..+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3444445555555555555554432 44555555566666666666666655555432 355555544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.38 E-value=2.1 Score=38.27 Aligned_cols=74 Identities=8% Similarity=0.004 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHH
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~ 383 (464)
...++..+...|++++++..+..+... -+.+...+..+|.++.+.|+..+|.+.|+...+... ...|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~--~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA--DDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HHhCCCCCHHH
Confidence 445666777788888888888777764 233677888888888888888888888887755332 45688887665
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.08 E-value=24 Score=36.79 Aligned_cols=81 Identities=11% Similarity=-0.047 Sum_probs=39.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCC--CCc--HhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHH
Q 044770 168 FHILMKIEANDHNIEGLMKVYSDMKRSEV--EPN--EVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLII 243 (464)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (464)
|..++..+-+.+.++.+.++-....+... .++ ...|..+.+++...|++++|...+-.+.....+ ......++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 45555666666666666655544433211 111 113555666666666666666665555433221 233444444
Q ss_pred HHHhhcC
Q 044770 244 LYGYLAK 250 (464)
Q Consensus 244 ~~~~~~~ 250 (464)
.++..+.
T Consensus 980 ~lce~~~ 986 (1139)
T 4fhn_B 980 QLTKQGK 986 (1139)
T ss_dssp HHHHHCC
T ss_pred HHHhCCC
Confidence 4444443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.63 E-value=3 Score=31.56 Aligned_cols=63 Identities=5% Similarity=0.058 Sum_probs=46.1
Q ss_pred hhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCc-------hhHHHHHHHHHhhcChHHHHHHhhhc
Q 044770 26 RGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKE-------LDYSYLLEFTIKNHGISQGEKLFCCI 88 (464)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 88 (464)
...+..-++.+...+.++.|+-+.+.+....+..|+. .++..+.+.+...|++..|...|++.
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4467778888899999999998888866543334443 24566777888889998888888774
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.95 E-value=4.8 Score=27.42 Aligned_cols=64 Identities=14% Similarity=0.024 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044770 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425 (464)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 425 (464)
+.-+..+-++.+ ....+.|++.+..+.+++|-+.+++.-|.++|+..+.+- .+...+|..+++-
T Consensus 25 D~~e~rrglN~l-------~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTL-------VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHH-------TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHH-------hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 555666777777 677889999999999999999999999999999888542 2334467666653
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.40 E-value=13 Score=31.78 Aligned_cols=117 Identities=14% Similarity=-0.055 Sum_probs=74.4
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHH----HHHHHHhCCCCccHHHHHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG----LLKEMSMNGCKPNAITYRHLAL 347 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~ 347 (464)
|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-+ +++-..+.++.++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44666667777888888877654332 2344566555544 3455556778888888888887
Q ss_pred HHHhcCCh-HHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHH
Q 044770 348 GCFKSNLV-EEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLF 404 (464)
Q Consensus 348 ~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (464)
.+..-..- ..=.++.+.+++-..... ....-+......+...|.+.|++.+|..-|
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g-~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFS-EYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 76553321 123556666665543211 112346777789999999999999988755
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=86.76 E-value=10 Score=31.49 Aligned_cols=52 Identities=8% Similarity=-0.183 Sum_probs=27.0
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCCCch---hHHHHHHHHHhhcChHHHHHHhhhc
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRERPYRPKEL---DYSYLLEFTIKNHGISQGEKLFCCI 88 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~ 88 (464)
.+...++.|+++....+++ .|..++.. .-.+.+...+..|+.+-+..+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~-----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 62 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE-----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH-----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHH-----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 4455566677655444443 22222221 1234455566677777666666653
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=86.16 E-value=18 Score=32.17 Aligned_cols=26 Identities=4% Similarity=-0.017 Sum_probs=18.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHH
Q 044770 167 TFHILMKIEANDHNIEGLMKVYSDMK 192 (464)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~m~ 192 (464)
....|...|.+.|+.++..+++....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44566777777888777777776654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.65 E-value=9.7 Score=34.46 Aligned_cols=59 Identities=10% Similarity=-0.045 Sum_probs=27.5
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccC--ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLK--ATEQYNSVISVYCKNGFIDKASGLLKEM 330 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m 330 (464)
...+...|.+.|+++.|.+.|.++......+ -...+-.++..+...+++..+...+.+.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4445555555555555555555555422111 1223444444444455555555544443
|
| >3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=85.32 E-value=12 Score=32.78 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=43.5
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCccHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF--IDKASGLLKEMSMNGCKPNAI 340 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 340 (464)
...++.-|...|+.++|.+.++++...... .......+..++-+.++ .+....++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 567888888899999999999888752211 12334444455544332 345777888888777654433
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.47 E-value=9.6 Score=27.59 Aligned_cols=64 Identities=14% Similarity=0.024 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 044770 354 LVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKA 425 (464)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 425 (464)
|.-+..+-++.+ ....+.|++.+..+-+++|-+.+++..|.++|+-.+.+- .+...+|..+++-
T Consensus 68 D~wElrrglN~l-------~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTL-------VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHH-------TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHH-------hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 444556666666 667889999999999999999999999999999888642 2344467666653
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.86 E-value=10 Score=27.45 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHH
Q 044770 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLI 242 (464)
Q Consensus 184 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (464)
..+-++.+....+.|++......+++|-+.+++..|.++|+-++.+ ..+....|..++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 4444455555556666666666666666666666666666665544 223333444443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=82.60 E-value=22 Score=30.35 Aligned_cols=148 Identities=7% Similarity=0.004 Sum_probs=88.8
Q ss_pred HHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHH
Q 044770 33 INRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIK 112 (464)
Q Consensus 33 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 112 (464)
++.....|++=+|.+.++. +..-|.+.+++++|.+++..-. ..+.+.|+..
T Consensus 20 l~~~I~~G~yYEAhQ~~Rt----------------l~~Ry~~~~~~~eAidlL~~ga-------------~~ll~~~Q~~ 70 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTLRT----------------IANRYVRSKSYEHAIELISQGA-------------LSFLKAKQGG 70 (312)
T ss_dssp HHHHHHHTCHHHHHHHHHH----------------HHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHH
T ss_pred HHHHhhccChHHHHHHHHH----------------HHHHHHHhcCHHHHHHHHHHHH-------------HHHHHCCCcc
Confidence 3444455666555555543 3344666777887777765543 2345567765
Q ss_pred HHHH----HHHHHHHcCCCCchhhHHHHHHHhcCCCCcc-cHHHHHHHHHh----CCC--CCChhhHHHHHHHHHccCCh
Q 044770 113 LSLE----YMKKMRVLGHSISYLVFNRLIILNSSPGRRK-TIPNILRQMKA----DKV--APHVSTFHILMKIEANDHNI 181 (464)
Q Consensus 113 ~a~~----~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~~~~ 181 (464)
.|-+ +++.+.+.+.+++......++..+.....-+ .=.++++.+++ .|- .-+......+...|.+.+++
T Consensus 71 sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~ 150 (312)
T 2wpv_A 71 SGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFV 150 (312)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCH
Confidence 5554 4566666788889888888888877644322 23444455443 221 23566777888888898988
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhc
Q 044770 182 EGLMKVYSDMKRSEVEPNEVSYCILATAHAVA 213 (464)
Q Consensus 182 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 213 (464)
.+|...|- .|-.-|...+..++.-+...
T Consensus 151 ~~A~~H~i----~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 151 YEAERYFM----LGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HHHHHHHH----TSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----hCCCccHHHHHHHHHHHHHh
Confidence 88887664 11111455666555555544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=80.99 E-value=13 Score=26.88 Aligned_cols=52 Identities=10% Similarity=-0.011 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc
Q 044770 285 VSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN 338 (464)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 338 (464)
..++..+++.+.+.+..-....+--+.-++.+.|++++|.+..+.+.+ +.|+
T Consensus 59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 345666666666544222344555566677777777777777777776 4554
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=80.29 E-value=11 Score=31.39 Aligned_cols=47 Identities=9% Similarity=-0.035 Sum_probs=21.5
Q ss_pred cCChhHHHHHHHHHHhCCCCccHHH--HHHHHHHHHhcCChHHHHHHHH
Q 044770 317 NGFIDKASGLLKEMSMNGCKPNAIT--YRHLALGCFKSNLVEEGFKALE 363 (464)
Q Consensus 317 ~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~ 363 (464)
.+......++++.+.+.|..++... -.+.+...+..|..+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3444444455555555554443211 1122333444566655555555
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 464 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.28 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.25 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.24 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.23 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.2 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.11 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.1 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.08 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.03 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.77 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.64 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.6 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.57 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.42 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.38 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.34 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.33 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.33 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.33 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.31 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.27 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.21 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.21 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.19 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.14 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.13 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.11 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.06 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.87 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.87 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.86 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.85 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.74 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.69 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.65 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.64 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.64 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.63 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.61 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.6 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.57 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.54 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.43 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.42 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.37 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.34 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.25 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.73 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.65 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.76 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.64 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.16 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.91 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.37 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.07 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 88.71 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.44 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 80.4 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=4.7e-22 Score=179.77 Aligned_cols=381 Identities=10% Similarity=0.001 Sum_probs=310.6
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCc
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGV 110 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~ 110 (464)
+...+.+.|++++|++.++.+.+.. +-+...+..+..++...|++++|...|+++.+..| +..+|..+...+...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence 5567789999999999999998854 33567888899999999999999999999877644 57889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 044770 111 IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSD 190 (464)
Q Consensus 111 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (464)
+++|+..+....+.. +.+..............+....+........... .................+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence 999999999999864 3344445555555555666666666666655543 44455555666777788888888888888
Q ss_pred HHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchh
Q 044770 191 MKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSK 270 (464)
Q Consensus 191 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 270 (464)
..... +-+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++......+....
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 238 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHH
Confidence 77653 2356677888888999999999999999987753 345678888999999999999999999998887777778
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCF 350 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 350 (464)
.+..+...+.+.|++++|...|++..+.. +-+..+|..+...+...|++++|...++..... .+.+...+..+...+.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHH
Confidence 88899999999999999999999998743 346778999999999999999999999998875 3446778888889999
Q ss_pred hcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc-HHHHHHHHHHHHH
Q 044770 351 KSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKY-TFVYNTLIKAYVK 428 (464)
Q Consensus 351 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 428 (464)
..|++++|+..+++++ ...| +..++..+...|.+.|++++|...|++..+. .|+ ...|..+...|.+
T Consensus 317 ~~~~~~~A~~~~~~al---------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~ 385 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKAL---------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKE 385 (388)
T ss_dssp TTTCHHHHHHHHHHHT---------TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH---------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 9999999999999983 3445 4677889999999999999999999999875 365 5589999999888
Q ss_pred cCC
Q 044770 429 AKI 431 (464)
Q Consensus 429 ~g~ 431 (464)
.||
T Consensus 386 ~~D 388 (388)
T d1w3ba_ 386 MQD 388 (388)
T ss_dssp TCC
T ss_pred cCC
Confidence 775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=5.6e-20 Score=165.94 Aligned_cols=374 Identities=12% Similarity=0.050 Sum_probs=302.2
Q ss_pred HHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCc
Q 044770 68 LLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR 146 (464)
Q Consensus 68 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (464)
+...+.+.|++++|.+.++++.+..| +..++..+...+.+.|++++|+..|++..+.. +-+..++..+...+.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 45567789999999999999877645 67889999999999999999999999999864 34577899999999999999
Q ss_pred ccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHH
Q 044770 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
++|...+....+.. +.+...+..........+....+........... .................+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 99999999998765 4555555566666667777777776666665443 334445555566667778888888888777
Q ss_pred HhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhh
Q 044770 227 EKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQ 306 (464)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 306 (464)
... .+.+...+..+...+...|+.+.|...++......+.+...+..+...+...|++++|...++...... +.+...
T Consensus 162 ~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hcc-CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 665 344567788888999999999999999999888777777789999999999999999999999988743 346677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHH
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTL 385 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ 385 (464)
+..+...+.+.|++++|+..|++..+. .| +..++..+...+...|++++|...++.+.. ..+.+...+.
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~ 309 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--------LCPTHADSLN 309 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--------HCTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--------cCCccchhhh
Confidence 888999999999999999999999884 44 567888899999999999999999998842 2345667788
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCc-HHHHHHHHHHHHHcCCC--hhHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 044770 386 SIIEIFAEKGDVGNAENLFEELKKANYTKY-TFVYNTLIKAYVKAKIN--DPNLLRRMILGGARPD-AETYSLLKLAEQ 460 (464)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~--a~~~~~~m~~~~~~p~-~~t~~~L~~~~~ 460 (464)
.+...+.+.|++++|...|++..+.. |+ ..+|..+...|.+.|+. |...|++..+ +.|+ ...+..|-.+..
T Consensus 310 ~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~ 384 (388)
T d1w3ba_ 310 NLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 99999999999999999999988753 54 55899999999999985 9999999876 4675 455666655443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.9e-13 Score=118.20 Aligned_cols=278 Identities=9% Similarity=0.005 Sum_probs=185.6
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 044770 100 NLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179 (464)
Q Consensus 100 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (464)
.....+.+.|++++|+..|++.++.. +-+..+|..+..++...|++++|...|++..+.. +-+...|..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45666788899999999999988864 3357788888888888999999999998887754 445677778888888899
Q ss_pred ChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHH
Q 044770 180 NIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWA 259 (464)
Q Consensus 180 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (464)
++++|.+.+++.... .|+............... +.......+..+...+...++...+.
T Consensus 102 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGA-------------------GLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHT--STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHh--ccchHHHHHhhhhhhhhc-------------------ccccchhhHHHHHHhhHHHHHHHHHH
Confidence 999999888888764 232211100000000000 00000001112223344455555555
Q ss_pred Hhcc-C-CCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 044770 260 TVQE-L-PNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP 337 (464)
Q Consensus 260 ~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 337 (464)
.... . ...+...+..+...+...|++++|...|+...... +-+...|..+...|...|++++|.+.|++..+. .|
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p 237 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QP 237 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHH--hh
Confidence 5444 2 22345567778888889999999999999888743 335778888999999999999999999998874 44
Q ss_pred -cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhc---CCCCcHHHHHHHHHHHHhcCChhhHHHH
Q 044770 338 -NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVR---SSTPWLETTLSIIEIFAEKGDVGNAENL 403 (464)
Q Consensus 338 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~ 403 (464)
+...+..+..+|.+.|++++|+..|++++++.+..... ........|..+-.++...|+.+.+...
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46678888999999999999999999998764432111 1112233456666666666776655433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.7e-13 Score=118.37 Aligned_cols=244 Identities=8% Similarity=-0.059 Sum_probs=175.4
Q ss_pred HHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC
Q 044770 66 SYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG 144 (464)
Q Consensus 66 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 144 (464)
-.....+.+.|++++|...|+++.+..| +..+|..+..++...|++++|+..|++..+.. +-+...+..+...+...|
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 3566678899999999999999887745 67899999999999999999999999999864 345778888999999999
Q ss_pred CcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHH
Q 044770 145 RRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVE 224 (464)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 224 (464)
++++|.+.++..... .|+............. ..+.......+..+...+.+.+|...+.
T Consensus 102 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRY--TPAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHT--STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHh--ccchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 999999999999875 3332211000000000 0000111111223344556667777777
Q ss_pred HHHhccC-CCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCC
Q 044770 225 ALEKSMT-GNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKA 303 (464)
Q Consensus 225 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 303 (464)
+...... ..+..++..+...+...|++++|...++......+.+...|..+...|...|++++|.+.|++..+.. +-+
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 239 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGY 239 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHh-hcc
Confidence 6655432 23455666777777888888888888887777666667778888888888999999999998887743 235
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 304 TEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 304 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
..+|..+..+|.+.|++++|+..|++.++
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66788888889999999999999888776
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=2.1e-09 Score=92.36 Aligned_cols=216 Identities=10% Similarity=0.050 Sum_probs=135.7
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcC-hhhHHHHHHHHHHhccCCCChhhHHHHHHH
Q 044770 166 STFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR-LYTVAETYVEALEKSMTGNNWSTLDVLIIL 244 (464)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (464)
..|+.+...+.+.+.+++|+++++++.+.. +-+...|+....++...| ++++|+..++...+. -+-+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~-~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-QPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-HHhhhhHHHHHhHH
Confidence 345555566666777777777777776652 123445666666666654 467777777777665 23456667777777
Q ss_pred HHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCC-----
Q 044770 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGF----- 319 (464)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----- 319 (464)
+...|++++|+..++.+....+.+...|..+...+...|++++|...++.+.+.. +.+...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhh
Confidence 7777777777777777777666667777777777777888888888888777743 2355667766666555544
Q ss_pred -hhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHh
Q 044770 320 -IDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE 393 (464)
Q Consensus 320 -~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 393 (464)
+++|+..+...++. .| +...|..+...+. ....+++.+.++...++ .....+...+..++..|..
T Consensus 201 ~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 201 VLEREVQYTLEMIKL--VPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDL------QPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHH--STTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHH------TTTCCCHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHh--CCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHh------CCCcCCHHHHHHHHHHHHH
Confidence 46777777777764 34 4555555544443 34456677777766432 1112244455556666543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=1.1e-09 Score=96.19 Aligned_cols=128 Identities=9% Similarity=0.016 Sum_probs=82.9
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCcc-HHHHH
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLK---ATEQYNSVISVYCKNGFIDKASGLLKEMSM----NGCKPN-AITYR 343 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~ 343 (464)
+..+...+...|+++.|...++......... ....+..+..++...|++++|...+++... .+..|+ ...+.
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 295 (366)
T d1hz4a_ 216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 295 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHH
Confidence 4455666677788888888877765432221 233455677788888899998888887753 344444 34566
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC----cHHHHHHHHHHHHhcCChhhHHH
Q 044770 344 HLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP----WLETTLSIIEIFAEKGDVGNAEN 402 (464)
Q Consensus 344 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~ 402 (464)
.+...+...|++++|.+.+++++++... .+... .......++..+...++.+++.+
T Consensus 296 ~la~~~~~~g~~~~A~~~l~~Al~l~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 296 LLNQLYWQAGRKSDAQRVLLDALKLANR---TGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHH---HCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhh---cCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 7777888999999999999988776542 22211 12234455566666777666644
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=2.8e-09 Score=91.63 Aligned_cols=237 Identities=12% Similarity=0.045 Sum_probs=140.8
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCC-CcccHHHHHHHHHhCCCCCChhhHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPG-RRKTIPNILRQMKADKVAPHVSTFHILMK 173 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (464)
..+|+.+...+.+.+.+++|+++++++++.+ +-+...|+....++...| ++++|...++...+.. +-+..+|+.+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 3466667777777788888888888888754 334556676666666554 4677777777776654 455667777777
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhh
Q 044770 174 IEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKD 253 (464)
Q Consensus 174 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (464)
.+.+.|++++|+..++++.+.. +.+...|..+...+.+.|++++|+..++++.+.. +.+...|+.+..++.+.+...
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~- 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN- 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC-
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccc-
Confidence 7777777777777777777653 2256677777777777777777777777776652 223444544443333333211
Q ss_pred HHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 044770 254 LERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMN 333 (464)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 333 (464)
..+.+++|...+....+.. +.+...|+.+...+.. ...+++.+.++...+.
T Consensus 198 ---------------------------~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 198 ---------------------------DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDL 248 (315)
T ss_dssp ---------------------------SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHH
T ss_pred ---------------------------hhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHh
Confidence 1233556666666666532 2355666666554433 3356666766666553
Q ss_pred CCCc-cHHHHHHHHHHHHhc--CChHHHHHHHHHh
Q 044770 334 GCKP-NAITYRHLALGCFKS--NLVEEGFKALELG 365 (464)
Q Consensus 334 g~~p-~~~~~~~ll~~~~~~--~~~~~a~~~~~~~ 365 (464)
...+ +...+..+...+... +..+.+...++++
T Consensus 249 ~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka 283 (315)
T d2h6fa1 249 QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKA 283 (315)
T ss_dssp TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 2222 334444454444322 3333444444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=6.9e-10 Score=95.44 Aligned_cols=149 Identities=8% Similarity=0.041 Sum_probs=67.6
Q ss_pred ccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHH
Q 044770 147 KTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEAL 226 (464)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 226 (464)
++|..+|++..+...+.+...|...+......|+++.|..+|+.+.+.........|...+..+.+.|+.+.|.++|+.+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44555555555433333444555555555566666666666666554322212334555555555555666666666555
Q ss_pred HhccCCCChhhHHHHHHH-HHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHH
Q 044770 227 EKSMTGNNWSTLDVLIIL-YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQ 296 (464)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 296 (464)
.+.+. .+...+...... +...|+.+.|..+|+.+....+.+...|...++.+.+.|+++.|..+|++..
T Consensus 161 l~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai 230 (308)
T d2onda1 161 REDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 54321 122222221111 1122334444444444433333333334444444444444444444444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=2.7e-09 Score=93.67 Aligned_cols=296 Identities=10% Similarity=-0.028 Sum_probs=149.9
Q ss_pred HHHHHhhcchHHHHHHHHHHHHcCCCCCC---chhHHHHHHHHHhhcChHHHHHHhhhcCCC---CC----chhHHHHHH
Q 044770 33 INRLRKLQLNKRALEVMEWVIRERPYRPK---ELDYSYLLEFTIKNHGISQGEKLFCCIPKD---YQ----NELLYNNLV 102 (464)
Q Consensus 33 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~----~~~~~~~li 102 (464)
...+...|++++|+++++...+..+-.++ ...+..+...+...|++++|...|++.... .+ ....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 44455677777777777777663211110 123444555666666666666666654332 11 122334444
Q ss_pred HHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCC---ChhhHHHHHHHHHccC
Q 044770 103 IACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAP---HVSTFHILMKIEANDH 179 (464)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~ 179 (464)
..+...|++..+...+....... ...+... ....+..+...+...|
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~~~la~~~~~~~ 147 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLI-------------------------------NEQHLEQLPMHEFLVRIRAQLLWAWA 147 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------------------------------HhcccchhhHHHHHHHHHHHHHHHhc
Confidence 55555555555555555443210 0000000 0112333444555555
Q ss_pred ChhHHHHHHHHHHhCC----CCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccC--CCC----hhhHHHHHHHHHhhc
Q 044770 180 NIEGLMKVYSDMKRSE----VEPNEVSYCILATAHAVARLYTVAETYVEALEKSMT--GNN----WSTLDVLIILYGYLA 249 (464)
Q Consensus 180 ~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~~ 249 (464)
+++.+...+....... ......++......+...++...+...+.+...... ... ...+......+...|
T Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 6666555555544321 111222333344445555555555555554432211 110 123344445556666
Q ss_pred ChhhHHHHHHHhccCCC----CchhhHHHHHHHhhccCChHHHHHHHHHHHhc----cccC-ChhhHHHHHHHHHhcCCh
Q 044770 250 KGKDLERIWATVQELPN----VRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV----KQLK-ATEQYNSVISVYCKNGFI 320 (464)
Q Consensus 250 ~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~ 320 (464)
+.+.|...++......+ .....+..+...+...|++++|...++..... +..| ....+..+...|.+.|++
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 307 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence 66666666666544211 12233555677788888888888888876532 2222 244677778888888999
Q ss_pred hHHHHHHHHHHhC----CCCc----cHHHHHHHHHHHHhcCChHHHH
Q 044770 321 DKASGLLKEMSMN----GCKP----NAITYRHLALGCFKSNLVEEGF 359 (464)
Q Consensus 321 ~~a~~~~~~m~~~----g~~p----~~~~~~~ll~~~~~~~~~~~a~ 359 (464)
++|.+.+++..+. |... ....+..++..+...++.+++.
T Consensus 308 ~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e 354 (366)
T d1hz4a_ 308 SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 354 (366)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 9999888876542 2211 1123344445555555555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=1.6e-09 Score=93.15 Aligned_cols=186 Identities=10% Similarity=0.018 Sum_probs=124.6
Q ss_pred cHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 044770 110 VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVYS 189 (464)
Q Consensus 110 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (464)
..++|..+|++..+...+.+...|...+....+.|+++.|..+|+.+++........+|...+..+.+.|+++.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45677777777776544445556677777777778888888888887765322223467777888888888888888888
Q ss_pred HHHhCCCCCcHhHHHHHHHH-HHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCc
Q 044770 190 DMKRSEVEPNEVSYCILATA-HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVR 268 (464)
Q Consensus 190 ~m~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 268 (464)
...+.+.. +...|...... +...|+.+.|..+|+.+.+. .+.+...+...+..+...|+.+.|..+|++.....+.+
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 87766422 33333333222 33457778888888888775 44556777788888888888888888888776633322
Q ss_pred ----hhhHHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 269 ----SKSYVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 269 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
...|...+..-...|+.+.+.++++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23566666666667888888877777665
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.11 E-value=9e-10 Score=96.00 Aligned_cols=85 Identities=4% Similarity=-0.107 Sum_probs=42.0
Q ss_pred hhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHH
Q 044770 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGL 326 (464)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 326 (464)
..+..+.+...+.......+.....+..+...+...|+.++|...+.+..+.. +.+...|..+..++...|++++|++.
T Consensus 220 ~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~ 298 (334)
T d1dcea1 220 FTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQY 298 (334)
T ss_dssp HHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHH
T ss_pred HhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 33444444444444433333333334444444555555555555555555422 12344555555555566666666666
Q ss_pred HHHHHh
Q 044770 327 LKEMSM 332 (464)
Q Consensus 327 ~~~m~~ 332 (464)
++...+
T Consensus 299 ~~~ai~ 304 (334)
T d1dcea1 299 FSTLKA 304 (334)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666555
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=1.1e-09 Score=95.32 Aligned_cols=231 Identities=6% Similarity=-0.080 Sum_probs=133.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcC--hhhHHHHHHHHHHhccCCCChhhH-HHHHHHHHhhcChhhH
Q 044770 178 DHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVAR--LYTVAETYVEALEKSMTGNNWSTL-DVLIILYGYLAKGKDL 254 (464)
Q Consensus 178 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a 254 (464)
.|.+++|+.+++...+.. +.+...|..+..++...+ ++++|...+.++..... ++...+ ......+...+..+.|
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHH
Confidence 344556666666665542 224445555555554443 35666666666655422 233333 2333455556666667
Q ss_pred HHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 044770 255 ERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNG 334 (464)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 334 (464)
...++.+....+.+...|..+...+.+.|++++|...+....+.. |+ .......+...+..+++...+.......
T Consensus 164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~ 238 (334)
T d1dcea1 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (334)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC
Confidence 776666666666666667777777777777766655554433311 11 1122333455566777777777766643
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 044770 335 CKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKANYT 413 (464)
Q Consensus 335 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 413 (464)
+++...+..+...+...++.++|...+.+. ....| +...+..+...|...|+.++|.+.++...+..
T Consensus 239 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---------~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-- 306 (334)
T d1dcea1 239 -AEPLFRCELSVEKSTVLQSELESCKELQEL---------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-- 306 (334)
T ss_dssp -CCCSSSCCCCHHHHHHHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--
T ss_pred -cchhhHHHHHHHHHHHHhhHHHHHHHHHHH---------HhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--
Confidence 223344455555666677778888777776 33344 44566777778888888888888888887753
Q ss_pred CcHH-HHHHHHHHHH
Q 044770 414 KYTF-VYNTLIKAYV 427 (464)
Q Consensus 414 p~~~-~~~~li~~~~ 427 (464)
|+.. .|+.+...+.
T Consensus 307 P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 307 PMRAAYLDDLRSKFL 321 (334)
T ss_dssp GGGHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHh
Confidence 5433 5555544443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=4.6e-09 Score=87.72 Aligned_cols=128 Identities=9% Similarity=-0.100 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHH
Q 044770 95 ELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKI 174 (464)
Q Consensus 95 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (464)
..+|..+...|.+.|++++|+..|++.++.. +-+..+|..+..++.+.|++++|...|+++.+.. +.+..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHH
Confidence 3455666667777777777777777777653 3345666667777777777777777777776643 3344556666677
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHH
Q 044770 175 EANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEA 225 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 225 (464)
+...|++++|.+.|+...+.. +.+......+..++.+.+..+.+..+...
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 164 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 777777777777777766542 11233333333333444444444333333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=1.5e-08 Score=84.46 Aligned_cols=199 Identities=12% Similarity=-0.056 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhc
Q 044770 202 SYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGR 281 (464)
Q Consensus 202 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (464)
+|..+..+|.+.|++++|+..|++..+. .+.++.++..+..++...|++++|...|+.+....+.+..++..+...|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAI-RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhcc-CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 4555556666677777777777776654 233556666677777777777777777777666555555667777778888
Q ss_pred cCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhc----CChHH
Q 044770 282 IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKS----NLVEE 357 (464)
Q Consensus 282 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----~~~~~ 357 (464)
.|++++|...|+...+.. +.+......+..++.+.+..+.+..+..........+ ..+. ++..+... +..+.
T Consensus 118 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~ 193 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ--WGWN-IVEFYLGNISEQTLMER 193 (259)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS--THHH-HHHHHTTSSCHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh--hhhh-HHHHHHHHHHHHHHHHH
Confidence 888888888888877643 2234444444445555565555555555555432221 1111 12222111 11222
Q ss_pred HHHHHHHhHHHHhhhhhcCCCCc-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcH
Q 044770 358 GFKALELGMKLITTKKVRSSTPW-LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYT 416 (464)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 416 (464)
+...+.... ...|+ ..+|..+...|...|++++|.+.|+...+.. |+.
T Consensus 194 ~~~~~~~~~---------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~ 242 (259)
T d1xnfa_ 194 LKADATDNT---------SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 242 (259)
T ss_dssp HHHHCCSHH---------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred HHHHHHHhh---------hcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCC
Confidence 222221111 11121 2456678888888999999999999888754 543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.77 E-value=4.4e-07 Score=76.65 Aligned_cols=206 Identities=8% Similarity=-0.012 Sum_probs=115.9
Q ss_pred HHHHHccCChhHHHHHHHHHHhC----CCCC-cHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 044770 172 MKIEANDHNIEGLMKVYSDMKRS----EVEP-NEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYG 246 (464)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (464)
...|...+++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|...+++.... +.
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~---------------~~ 108 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FT 108 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH---------------hh
Confidence 45566677777777777665431 1111 1245566666666666666666666554332 11
Q ss_pred hhcChhhHHHHHHHhccCCCCchhhHHHHHHHhh-ccCChHHHHHHHHHHHhc----cccC-ChhhHHHHHHHHHhcCCh
Q 044770 247 YLAKGKDLERIWATVQELPNVRSKSYVLAIEAFG-RIAQVSRAEELWLEMQSV----KQLK-ATEQYNSVISVYCKNGFI 320 (464)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~ 320 (464)
..|+...+ ...+..+...|. ..|++++|...+++..+. +.++ ...+|..+...+...|++
T Consensus 109 ~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y 174 (290)
T d1qqea_ 109 HRGQFRRG--------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (290)
T ss_dssp HTTCHHHH--------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hcccchhH--------------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChH
Confidence 11111111 122445555553 458888888888776542 1111 134578889999999999
Q ss_pred hHHHHHHHHHHhCCCC-----ccH-HHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHh-
Q 044770 321 DKASGLLKEMSMNGCK-----PNA-ITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE- 393 (464)
Q Consensus 321 ~~a~~~~~~m~~~g~~-----p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 393 (464)
++|+..|++....... +.. ..+...+..+...|+++.|...++.+.+..+. ............++.++-.
T Consensus 175 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~---~~~sre~~~l~~l~~a~~~~ 251 (290)
T d1qqea_ 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN---FADSRESNFLKSLIDAVNEG 251 (290)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---ccchHHHHHHHHHHHHHHhc
Confidence 9999999998774311 111 12334445567789999999999998422110 0001112344566666554
Q ss_pred -cCChhhHHHHHHHHHH
Q 044770 394 -KGDVGNAENLFEELKK 409 (464)
Q Consensus 394 -~g~~~~A~~~~~~m~~ 409 (464)
.+.+++|+.-|+.+.+
T Consensus 252 d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 252 DSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp CTTTHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 2346777777655443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=1.2e-06 Score=68.71 Aligned_cols=124 Identities=5% Similarity=-0.060 Sum_probs=68.9
Q ss_pred HHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHH
Q 044770 71 FTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIP 150 (464)
Q Consensus 71 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 150 (464)
.+...|+++.|++.|+++.. ++..+|..+..+|...|++++|++.|++.++.+ +-+...|..+..++.+.|++++|.
T Consensus 14 ~~~~~~d~~~Al~~~~~i~~--~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 34455555556555555433 444455555555566666666666666555543 223445555555555566666665
Q ss_pred HHHHHHHhCC------------C--CCC-hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 044770 151 NILRQMKADK------------V--APH-VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVE 197 (464)
Q Consensus 151 ~~~~~~~~~~------------~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 197 (464)
..|++..... . .++ ..++..+..++.+.|++++|.+.|+...+....
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 5555554321 0 000 123445666777888888888888777765433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1.8e-06 Score=67.50 Aligned_cols=148 Identities=11% Similarity=0.037 Sum_probs=105.9
Q ss_pred HHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCh
Q 044770 276 IEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLV 355 (464)
Q Consensus 276 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 355 (464)
...+...|+++.|.+.|+.+. +|++.+|..+..+|...|++++|++.|++.++... -+...|..+..++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccH
Confidence 455677888999988887653 36777888888999999999999999999888432 2567788888888899999
Q ss_pred HHHHHHHHHhHHHHhhh-----hh--cCCCCc-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 044770 356 EEGFKALELGMKLITTK-----KV--RSSTPW-LETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYV 427 (464)
Q Consensus 356 ~~a~~~~~~~~~~~~~~-----~~--~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 427 (464)
++|...|+++++..... .. ....++ ..++..+..++.+.|++++|.+.|+...+....|+.......+..+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~ 166 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 99999888886421100 00 111111 35566788889999999999999999888665554445554444444
Q ss_pred H
Q 044770 428 K 428 (464)
Q Consensus 428 ~ 428 (464)
+
T Consensus 167 ~ 167 (192)
T d1hh8a_ 167 K 167 (192)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=1.1e-06 Score=74.23 Aligned_cols=207 Identities=8% Similarity=-0.081 Sum_probs=130.0
Q ss_pred hhhHHHHHHHhcCCCCcccHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHhC----CC-CCc
Q 044770 130 YLVFNRLIILNSSPGRRKTIPNILRQMKAD----KVAP-HVSTFHILMKIEANDHNIEGLMKVYSDMKRS----EV-EPN 199 (464)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~ 199 (464)
...|......|...+++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|.+.+++..+. |. ...
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 116 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence 346888889999999999999999998762 2122 2357888999999999999999999876542 21 111
Q ss_pred HhHHHHHHHHHHh-cChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHH
Q 044770 200 EVSYCILATAHAV-ARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEA 278 (464)
Q Consensus 200 ~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (464)
..++..+...|.. .|++++|+..+++..+... ..++. .....++..+...
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~---------------~~~~~--------------~~~~~~~~~la~~ 167 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYA---------------QDQSV--------------ALSNKCFIKCADL 167 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH---------------HTTCH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH---------------hcCch--------------hhhhhHHHHHHHH
Confidence 3344555555533 5788888887777643210 00000 0011235667777
Q ss_pred hhccCChHHHHHHHHHHHhccccCCh------hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-cc---HHHHHHHHHH
Q 044770 279 FGRIAQVSRAEELWLEMQSVKQLKAT------EQYNSVISVYCKNGFIDKASGLLKEMSMNGCK-PN---AITYRHLALG 348 (464)
Q Consensus 279 ~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~---~~~~~~ll~~ 348 (464)
|...|++++|...|+++......... ..+...+..+...|+++.|...+++..+.... ++ ......++.+
T Consensus 168 ~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a 247 (290)
T d1qqea_ 168 KALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDA 247 (290)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHH
Confidence 88888888888888877653222111 12344555667788899999998888774311 11 2344556666
Q ss_pred HHh--cCChHHHHHHHHHh
Q 044770 349 CFK--SNLVEEGFKALELG 365 (464)
Q Consensus 349 ~~~--~~~~~~a~~~~~~~ 365 (464)
+.. .+.+++|+..|+.+
T Consensus 248 ~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 248 VNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHTTCTTTHHHHHHHHTTS
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 554 24567777777665
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.42 E-value=0.00029 Score=59.34 Aligned_cols=285 Identities=11% Similarity=0.033 Sum_probs=146.7
Q ss_pred cChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHH
Q 044770 24 VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVI 103 (464)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~ 103 (464)
|+......+...|.+.|.++.|..+|..+ ..|..++..+.+.++++.|.+++.+.. +..+|..+..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~----------~d~~rl~~~~v~l~~~~~avd~~~k~~----~~~~~k~~~~ 77 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN----STRTWKEVCF 77 (336)
T ss_dssp C----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHHT----CHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC----------CCHHHHHHHHHhhccHHHHHHHHHHcC----CHHHHHHHHH
Confidence 45566677778888888888888888654 236677788888888888888877653 5567777777
Q ss_pred HHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH
Q 044770 104 ACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEG 183 (464)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 183 (464)
.+.+......+. +...+...+......++..|-..|.+++...+++...... .++...++.++..|++.+ .++
T Consensus 78 ~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~k 150 (336)
T d1b89a_ 78 ACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQK 150 (336)
T ss_dssp HHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHH
T ss_pred HHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHH
Confidence 777776665432 2223334455556677778888888888888888765432 556667778888887753 334
Q ss_pred HHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhc--------cCCCChhhHHHHHHHHHhhcChhhHH
Q 044770 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS--------MTGNNWSTLDVLIILYGYLAKGKDLE 255 (464)
Q Consensus 184 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (464)
..+.+.... +..-...++..|-+.+-+.++.-++.++... ..+++..-...++..+.+..+.+...
T Consensus 151 l~e~l~~~s------~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~ 224 (336)
T d1b89a_ 151 MREHLELFW------SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYY 224 (336)
T ss_dssp HHHHHHHHS------TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHH
T ss_pred HHHHHHhcc------ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHH
Confidence 333333321 1111223344444444444444444433211 01222222233333333333333322
Q ss_pred HHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 044770 256 RIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGC 335 (464)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 335 (464)
.++..|... +++-...++..+... + .-..++..+.+.+++.-....+....+.|
T Consensus 225 ------------------~~i~~yL~~-~p~~i~~lL~~v~~~-~-----d~~r~V~~~~k~~~l~li~p~Le~v~~~n- 278 (336)
T d1b89a_ 225 ------------------RAIQFYLEF-KPLLLNDLLMVLSPR-L-----DHTRAVNYFSKVKQLPLVKPYLRSVQNHN- 278 (336)
T ss_dssp ------------------HHHHHHHHH-CGGGHHHHHHHHGGG-C-----CHHHHHHHHHHTTCTTTTHHHHHHHHTTC-
T ss_pred ------------------HHHHHHHHc-CHHHHHHHHHHhccC-C-----CHHHHHHHHHhcCCcHHHHHHHHHHHHcC-
Confidence 222222221 122222333222221 1 12345555566666666777776665544
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHH
Q 044770 336 KPNAITYRHLALGCFKSNLVEEGFKALE 363 (464)
Q Consensus 336 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 363 (464)
+....+.+...|...++++.-.+..+
T Consensus 279 --~~~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 279 --NKSVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 34567778888888888665444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=3.6e-06 Score=59.70 Aligned_cols=89 Identities=11% Similarity=-0.030 Sum_probs=54.2
Q ss_pred HHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhH
Q 044770 243 ILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDK 322 (464)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 322 (464)
..+...|++++|+..|+......+.+...|..+..+|...|++++|...+....+.. +.++..|..+..++...|++++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHH
Confidence 344455555555555555555455555556666666666666666666666666532 3355666666666666666666
Q ss_pred HHHHHHHHHh
Q 044770 323 ASGLLKEMSM 332 (464)
Q Consensus 323 a~~~~~~m~~ 332 (464)
|+..|++..+
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 6666666665
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.34 E-value=0.00054 Score=57.67 Aligned_cols=43 Identities=9% Similarity=0.186 Sum_probs=30.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC
Q 044770 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKI 431 (464)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 431 (464)
.++..+-+.+++......++...+.| +..+.+++..-|...++
T Consensus 253 r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d 295 (336)
T d1b89a_ 253 RAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEED 295 (336)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcch
Confidence 45666667777777777777766654 34577788888887776
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.33 E-value=2.1e-06 Score=67.92 Aligned_cols=99 Identities=11% Similarity=-0.080 Sum_probs=62.6
Q ss_pred CcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHH
Q 044770 198 PNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIE 277 (464)
Q Consensus 198 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 277 (464)
|+...+......+.+.|++++|+..|++..... +.++..|..+..+|.+.|+++.|...++......+....+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 444455555556666666666666666655542 3345556666666666666666666666666655555556777777
Q ss_pred HhhccCChHHHHHHHHHHHh
Q 044770 278 AFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 278 ~~~~~g~~~~a~~~~~~~~~ 297 (464)
+|...|++++|...|+...+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777776654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=7.9e-06 Score=57.89 Aligned_cols=87 Identities=11% Similarity=-0.058 Sum_probs=45.0
Q ss_pred HHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHH
Q 044770 210 HAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAE 289 (464)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 289 (464)
+.+.|++++|+..|++..+. .+.+...|..+..++...|++++|...+.......+.+...|..+..++...|++++|.
T Consensus 13 ~~~~g~~~eAi~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~ 91 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAK 91 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc-CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHH
Confidence 44445555555555554443 22334444444555555555555555555544444444445555566666666666666
Q ss_pred HHHHHHHh
Q 044770 290 ELWLEMQS 297 (464)
Q Consensus 290 ~~~~~~~~ 297 (464)
..|+...+
T Consensus 92 ~~~~~a~~ 99 (117)
T d1elwa_ 92 RTYEEGLK 99 (117)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 66666554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=8.7e-06 Score=61.40 Aligned_cols=91 Identities=9% Similarity=0.017 Sum_probs=69.2
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHh
Q 044770 273 VLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFK 351 (464)
Q Consensus 273 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 351 (464)
......|.+.|++++|...|++..+.. +-+...|..+..+|...|++++|+..|+..++. .| +...|..+..++..
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHHHHH
Confidence 344566778888888888888887743 346777888888888888888888888888774 34 45677778888888
Q ss_pred cCChHHHHHHHHHhH
Q 044770 352 SNLVEEGFKALELGM 366 (464)
Q Consensus 352 ~~~~~~a~~~~~~~~ 366 (464)
.|++++|...+++++
T Consensus 91 ~g~~~eA~~~~~~a~ 105 (159)
T d1a17a_ 91 LGKFRAALRDYETVV 105 (159)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 888888888888884
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.31 E-value=4e-06 Score=66.17 Aligned_cols=98 Identities=11% Similarity=-0.112 Sum_probs=77.5
Q ss_pred cChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHH
Q 044770 24 VHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLV 102 (464)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li 102 (464)
|+...+...-..+.+.|++++|+..|+.++... +.+...|..+..+|.+.|++++|+..|+...+..| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 566667777788888888888888888887743 34666788888888888888888888888877644 567788888
Q ss_pred HHHHhhCcHHHHHHHHHHHHH
Q 044770 103 IACLDKGVIKLSLEYMKKMRV 123 (464)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~ 123 (464)
.+|...|++++|+..|++..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888887765
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=1.4e-05 Score=60.21 Aligned_cols=86 Identities=12% Similarity=-0.072 Sum_probs=42.7
Q ss_pred HhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHH
Q 044770 246 GYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASG 325 (464)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 325 (464)
.+.|++++|...|+......+.+...|..+...|...|++++|...|+...+.. +.+...|..+..++...|++++|..
T Consensus 21 ~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~eA~~ 99 (159)
T d1a17a_ 21 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR 99 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 334444444444444333333344445555555555555555555555555422 2234455555555555555555555
Q ss_pred HHHHHHh
Q 044770 326 LLKEMSM 332 (464)
Q Consensus 326 ~~~~m~~ 332 (464)
.+++...
T Consensus 100 ~~~~a~~ 106 (159)
T d1a17a_ 100 DYETVVK 106 (159)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555555
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=5.8e-06 Score=58.84 Aligned_cols=97 Identities=8% Similarity=0.003 Sum_probs=51.2
Q ss_pred HHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccC---ChHHHHHHHHHHHhccccCC-hhhHHHHHHHHHh
Q 044770 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIA---QVSRAEELWLEMQSVKQLKA-TEQYNSVISVYCK 316 (464)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~ 316 (464)
+++.+...+++++|++.|+......+.+..++..+..++.+.+ ++++|..+|+++......|+ ..+|..+..+|.+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~ 84 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 3444444444555555555444444444444555555555433 33456666666655332222 2355566666666
Q ss_pred cCChhHHHHHHHHHHhCCCCccH
Q 044770 317 NGFIDKASGLLKEMSMNGCKPNA 339 (464)
Q Consensus 317 ~~~~~~a~~~~~~m~~~g~~p~~ 339 (464)
.|++++|+..|+++++ +.|+.
T Consensus 85 ~g~~~~A~~~~~~aL~--~~P~~ 105 (122)
T d1nzna_ 85 LKEYEKALKYVRGLLQ--TEPQN 105 (122)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTC
T ss_pred HhhhHHHHHHHHHHHH--hCcCC
Confidence 6777777777666666 34543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.21 E-value=4.3e-06 Score=58.76 Aligned_cols=93 Identities=11% Similarity=-0.045 Sum_probs=73.0
Q ss_pred chHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCC-chhHHHHHHHHHH
Q 044770 28 EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQ-NELLYNNLVIACL 106 (464)
Q Consensus 28 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~ 106 (464)
........+.+.|++++|+..|+.+++.. +-+...|..+..++.+.|++++|...|++..+..| +..+|..+...|.
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 95 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence 34456667778889999999999888754 23567788888888888888888888888766634 5778888888888
Q ss_pred hhCcHHHHHHHHHHHH
Q 044770 107 DKGVIKLSLEYMKKMR 122 (464)
Q Consensus 107 ~~~~~~~a~~~~~~m~ 122 (464)
..|++++|++.+++.+
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 8888888888887653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.19 E-value=0.00035 Score=57.34 Aligned_cols=223 Identities=13% Similarity=0.009 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcC----CCCcccHHHHHHHHHhCCCCCChhhHHHH
Q 044770 96 LLYNNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSS----PGRRKTIPNILRQMKADKVAPHVSTFHIL 171 (464)
Q Consensus 96 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (464)
..+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...|...+....+.+ +......+
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l 76 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence 344445555555666666666666665554 33344344444432 334455555555555433 22222222
Q ss_pred HHHHH----ccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHh----cChhhHHHHHHHHHHhccCCCChhhHHHHHH
Q 044770 172 MKIEA----NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAV----ARLYTVAETYVEALEKSMTGNNWSTLDVLII 243 (464)
Q Consensus 172 ~~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (464)
...+. ...+.+.|...++.....|.. .....+...+.. ......+...+...... .+...+..+..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~ 150 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGS 150 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhh
Confidence 22222 134455566666655554321 111112122221 22233334444333322 23333444444
Q ss_pred HHHhh----cChhhHHHHHHHhccCCCCchhhHHHHHHHhhc----cCChHHHHHHHHHHHhccccCChhhHHHHHHHHH
Q 044770 244 LYGYL----AKGKDLERIWATVQELPNVRSKSYVLAIEAFGR----IAQVSRAEELWLEMQSVKQLKATEQYNSVISVYC 315 (464)
Q Consensus 244 ~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 315 (464)
.+... .+...+...++...+... ......+...|.. ..+++.|...|....+.| ++..+..|...|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~~g~--~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACDLKD--SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 225 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred hhccCCCcccccccchhhhhccccccc--cccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHH
Confidence 44331 122333333333332221 1223333333332 345666666666666654 2334555555554
Q ss_pred h----cCChhHHHHHHHHHHhCCC
Q 044770 316 K----NGFIDKASGLLKEMSMNGC 335 (464)
Q Consensus 316 ~----~~~~~~a~~~~~~m~~~g~ 335 (464)
+ ..+.++|.+.|++..+.|.
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cCCCCccCHHHHHHHHHHHHHCcC
Confidence 3 2356666666666666553
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.1e-05 Score=57.32 Aligned_cols=99 Identities=9% Similarity=-0.007 Sum_probs=65.3
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCc---ccHHHHHHHHHhCCCCCC-hhhHHHHHHH
Q 044770 99 NNLVIACLDKGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRR---KTIPNILRQMKADKVAPH-VSTFHILMKI 174 (464)
Q Consensus 99 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 174 (464)
..++..+...+++++|.+.|++.+..+ +.+..++..+..++.+.++. ++|+.+|+++...+..|+ ..++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356667777778888888888777764 44666777777777665443 457777777766442232 2355667777
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCcH
Q 044770 175 EANDHNIEGLMKVYSDMKRSEVEPNE 200 (464)
Q Consensus 175 ~~~~~~~~~a~~~~~~m~~~~~~p~~ 200 (464)
|.+.|++++|.+.|++..+. .|+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~ 105 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQN 105 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCC
Confidence 77777777777777777764 4543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.13 E-value=8.1e-06 Score=57.27 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=46.4
Q ss_pred HHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-cHHHHHHHHHHHHhcC
Q 044770 275 AIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKP-NAITYRHLALGCFKSN 353 (464)
Q Consensus 275 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~ 353 (464)
+...+.+.|++++|...|++..+.. +-++..|..+..++.+.|++++|+..|++..+. .| +...+..+...+...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCC
Confidence 3444555555555555555555432 224555555555555555666666555555552 22 3445555555555555
Q ss_pred ChHHHHHHHHH
Q 044770 354 LVEEGFKALEL 364 (464)
Q Consensus 354 ~~~~a~~~~~~ 364 (464)
++++|.+.+++
T Consensus 99 ~~~~A~~~l~~ 109 (112)
T d1hxia_ 99 NANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 66665555554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.11 E-value=0.0015 Score=53.39 Aligned_cols=114 Identities=9% Similarity=-0.040 Sum_probs=62.7
Q ss_pred CChHHHHHHHHHHHhccccCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHh----cCC
Q 044770 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK----NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK----SNL 354 (464)
Q Consensus 283 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~ 354 (464)
.....+...+...... .+...+..+...|.. ..+...+...++...+.| +......+...+.. ..+
T Consensus 124 ~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d 197 (265)
T d1ouva_ 124 RDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKN 197 (265)
T ss_dssp CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCC
T ss_pred chhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccc
Confidence 3444555555554442 244456666666654 244555666666666544 33344344333333 456
Q ss_pred hHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCC
Q 044770 355 VEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAE----KGDVGNAENLFEELKKANY 412 (464)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~ 412 (464)
+++|..+|+.+. ..+ +...+..|...|.+ ..+.++|.+.|++..+.|.
T Consensus 198 ~~~A~~~~~~aa-------~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 198 FKEALARYSKAC-------ELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHH-------HTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhhHhhhh-------ccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 777777777772 333 23344456665554 3367777777777777664
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=6.2e-05 Score=54.04 Aligned_cols=102 Identities=10% Similarity=-0.033 Sum_probs=78.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCc-HHHHH
Q 044770 307 YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPW-LETTL 385 (464)
Q Consensus 307 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~-~~~~~ 385 (464)
+..+...+.+.|++++|+..|.+.++.+. .+...+..+..+|.+.|++++|+..++.++++.+. .....+. ..+|.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~--~~~~~~~~a~~~~ 83 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE--NREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcc--cHHHHHHHHHHHH
Confidence 45567788888999999999999888532 25778888888899999999999999998765432 1111111 35678
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC
Q 044770 386 SIIEIFAEKGDVGNAENLFEELKKAN 411 (464)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~~ 411 (464)
.+...+...+++++|...|+......
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 88899999999999999998887653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=7.3e-06 Score=74.65 Aligned_cols=110 Identities=8% Similarity=-0.048 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhcc
Q 044770 203 YCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRI 282 (464)
Q Consensus 203 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (464)
+..+...+.+.|+.+.|...+........ ..++..+...+...+++++|...++......+.+...|+.+...+...
T Consensus 123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~ 199 (497)
T d1ya0a1 123 SSQLGIISNKQTHTSAIVKPQSSSCSYIC---QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSK 199 (497)
T ss_dssp --------------------CCHHHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT
T ss_pred HHHhHHHHHhCCCHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHc
Confidence 33444444444555554444443322110 123444455555555555555555555555555555566666666666
Q ss_pred CChHHHHHHHHHHHhccccCChhhHHHHHHHHHh
Q 044770 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK 316 (464)
Q Consensus 283 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 316 (464)
|+..+|...|.+.... .+|-..++..|...+.+
T Consensus 200 ~~~~~A~~~y~ral~~-~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 200 GDHLTTIFYYCRSIAV-KFPFPAASTNLQKALSK 232 (497)
T ss_dssp TCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHH
Confidence 6666666666555542 23344455555554443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=4e-06 Score=76.42 Aligned_cols=133 Identities=11% Similarity=-0.084 Sum_probs=53.1
Q ss_pred CcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 044770 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDHNIEGLMKVY 188 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (464)
+.++.|+..+....+.. +++...+..+...+.+.|+.+.|...+....+.. | ..++..+...+...|++++|...|
T Consensus 100 ~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHTC--------------------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHH
Confidence 34444444443333221 2234445555555566666666665555544311 1 234445556666666666666666
Q ss_pred HHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHHHHh
Q 044770 189 SDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIILYGY 247 (464)
Q Consensus 189 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (464)
++..+.. +-+...|+.+...+...|+..+|...|.+.... .+|.+.++..|...+.+
T Consensus 176 ~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~-~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 176 RHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHH
Confidence 6665542 223455666666666666666666666666554 23444555555544443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=0.0002 Score=54.27 Aligned_cols=57 Identities=14% Similarity=-0.045 Sum_probs=27.1
Q ss_pred HHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHh
Q 044770 241 LIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQS 297 (464)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 297 (464)
+..+|.+.|+++.|+..++......+.+...+..+..+|...|++++|...|+...+
T Consensus 68 la~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 68 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444444444443333444444555555555555555555555544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=0.00029 Score=53.33 Aligned_cols=72 Identities=11% Similarity=-0.033 Sum_probs=58.0
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcc-HHHHHHH
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPN-AITYRHL 345 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l 345 (464)
+|+.+..+|.+.|++++|...++...+.. +.++.+|..+..+|...|++++|+..|++..+ +.|+ ......+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l 136 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQL 136 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 46778888999999999999999998853 34788899999999999999999999999988 4554 3333333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=0.00013 Score=52.36 Aligned_cols=88 Identities=10% Similarity=0.027 Sum_probs=39.1
Q ss_pred HHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhccccC-C-----hhhHHHHHHHHHhcC
Q 044770 245 YGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSVKQLK-A-----TEQYNSVISVYCKNG 318 (464)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~-----~~~~~~li~~~~~~~ 318 (464)
+...|++++|+..|.......+.+...+..+..+|.+.|++++|...++.+.+..... . ..+|..+...+...+
T Consensus 14 ~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~ 93 (128)
T d1elra_ 14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEE 93 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333444444444433333333333344445555555555555555555544321100 0 123444444555555
Q ss_pred ChhHHHHHHHHHHh
Q 044770 319 FIDKASGLLKEMSM 332 (464)
Q Consensus 319 ~~~~a~~~~~~m~~ 332 (464)
++++|+..|.....
T Consensus 94 ~~~~A~~~~~kal~ 107 (128)
T d1elra_ 94 KYKDAIHFYNKSLA 107 (128)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 66666666655544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.74 E-value=0.00029 Score=52.21 Aligned_cols=110 Identities=11% Similarity=-0.121 Sum_probs=67.1
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhC
Q 044770 30 FHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKG 109 (464)
Q Consensus 30 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~ 109 (464)
..-...+.+.|++.+|+..|..+.+..+..++... .. .. .... .....+|+.+..+|.+.|
T Consensus 21 ~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~-~~-~~---------------~~~~--~~~~~~~~Nla~~~~~l~ 81 (153)
T d2fbna1 21 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD-QI-LL---------------DKKK--NIEISCNLNLATCYNKNK 81 (153)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC-HH-HH---------------HHHH--HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhh-HH-HH---------------Hhhh--hHHHHHHhhHHHHHHHhc
Confidence 33445677889999999999998873322111100 00 00 0000 012235666677777777
Q ss_pred cHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhC
Q 044770 110 VIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKAD 159 (464)
Q Consensus 110 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (464)
++++|++.++..++.+ +.+..+|..+..++...|++++|...|+...+.
T Consensus 82 ~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 82 DYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777777653 345667777777777777777777777777664
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.69 E-value=0.00023 Score=54.25 Aligned_cols=124 Identities=10% Similarity=0.004 Sum_probs=85.8
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHhhCcH
Q 044770 32 SINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLDKGVI 111 (464)
Q Consensus 32 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 111 (464)
....+...|++++|.+.|........ .... ......+.+...-..+.. .....+..+...+...|++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~r---G~~l--------~~~~~~~w~~~~r~~l~~--~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWR---GPVL--------DDLRDFQFVEPFATALVE--DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCC---SSTT--------GGGTTSTTHHHHHHHHHH--HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCc---cccc--------ccCcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCc
Confidence 44567789999999999999987321 1110 000111111111111111 2345678888899999999
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHh-----CCCCCChhhHH
Q 044770 112 KLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKA-----DKVAPHVSTFH 169 (464)
Q Consensus 112 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 169 (464)
++|+..++.+.+.. +-+...|..++.++.+.|+..+|.+.|+++.+ .|+.|...+-.
T Consensus 84 ~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 84 SAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred hHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 99999999998864 45788899999999999999999999998744 58888876543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.65 E-value=0.00047 Score=51.01 Aligned_cols=66 Identities=11% Similarity=0.115 Sum_probs=47.4
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 339 (464)
+|..+..+|.+.|++++|.+.++...+. .+.++.+|..+..++...|++++|+..|+...+ +.|+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~-~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n 134 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNN 134 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTC
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccc-cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence 3566777777778888888887777763 334667777778888888888888888877777 34543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.64 E-value=0.00035 Score=52.79 Aligned_cols=61 Identities=13% Similarity=-0.038 Sum_probs=39.5
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 271 SYVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 271 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
.+..+..++.+.|++++|+..+....+.. +.++..|..+..+|...|++++|+..|+...+
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 35555666666677777777776666532 33556666666777777777777777776666
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.64 E-value=0.00039 Score=52.56 Aligned_cols=81 Identities=9% Similarity=-0.005 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhccCCCChhhHHHHHHH
Q 044770 165 VSTFHILMKIEANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKSMTGNNWSTLDVLIIL 244 (464)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (464)
...|..+..++.+.|++++|+..+++..+.. +.+..+|..+..++.+.|++++|+..|+...+.. +.+......+..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~ 154 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455566667777777777777777776653 2345667777777777777777777777776652 2344444444444
Q ss_pred HHh
Q 044770 245 YGY 247 (464)
Q Consensus 245 ~~~ 247 (464)
...
T Consensus 155 ~~~ 157 (169)
T d1ihga1 155 KQK 157 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.63 E-value=0.0013 Score=49.90 Aligned_cols=76 Identities=8% Similarity=-0.010 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHH
Q 044770 305 EQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLET 383 (464)
Q Consensus 305 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~ 383 (464)
..+..+...+...|++++|+..++.+.+.. +-+...|..++.++...|+..+|++.|+.+.+... ...|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~--~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA--DDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--HHhCCCcCHHH
Confidence 356777888888888888888888888742 22677888888888888888888888888754432 34678887654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.61 E-value=0.00025 Score=51.98 Aligned_cols=115 Identities=6% Similarity=-0.038 Sum_probs=68.5
Q ss_pred HHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhc----------ChHHHHHHhhhcCCC-CCchhHHHHHHHH
Q 044770 36 LRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNH----------GISQGEKLFCCIPKD-YQNELLYNNLVIA 104 (464)
Q Consensus 36 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~a~~~~~~~~~~-~~~~~~~~~li~~ 104 (464)
|-+.+.+++|++.|+...+.. +.+...+..+..++...+ .+++|+..|++..+. +.+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence 446677899999999998854 446667777777776543 345677777666555 3355667777666
Q ss_pred HHhhCc-----------HHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCC
Q 044770 105 CLDKGV-----------IKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADK 160 (464)
Q Consensus 105 ~~~~~~-----------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (464)
|...|+ +++|.+.|++..+. .|+...|..-+..+ ..|.+++.+..+.|
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 655442 45555555555553 34444444433332 23444555444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.60 E-value=0.00074 Score=50.12 Aligned_cols=102 Identities=13% Similarity=0.082 Sum_probs=73.2
Q ss_pred hHHHH--HHHHHhcCChhHHHHHHHHHHhCCC-Cc----------cHHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhh
Q 044770 306 QYNSV--ISVYCKNGFIDKASGLLKEMSMNGC-KP----------NAITYRHLALGCFKSNLVEEGFKALELGMKLITTK 372 (464)
Q Consensus 306 ~~~~l--i~~~~~~~~~~~a~~~~~~m~~~g~-~p----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 372 (464)
+|..+ ...+...|++++|+..|++.++... .| ....|+.+..++...|++++|...++.++++....
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 4455667888888888888765210 11 13578888899999999999999999998765432
Q ss_pred hhcCCCCc-----HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 044770 373 KVRSSTPW-----LETTLSIIEIFAEKGDVGNAENLFEELKK 409 (464)
Q Consensus 373 ~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (464)
....++ ...++.+..+|...|++++|...|++..+
T Consensus 89 --~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 --GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp --CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 23467789999999999999999998775
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.57 E-value=0.0016 Score=48.98 Aligned_cols=60 Identities=7% Similarity=0.001 Sum_probs=44.3
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 044770 272 YVLAIEAFGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSM 332 (464)
Q Consensus 272 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 332 (464)
|+.+..+|.+.|++++|...++..... .+.+..+|..+..++...|++++|...|.+..+
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l-~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGL-DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhc-ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555667777777888888877777763 334666777777778888888888888887776
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.54 E-value=0.00073 Score=50.88 Aligned_cols=130 Identities=8% Similarity=-0.121 Sum_probs=83.6
Q ss_pred chHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcCCCCCchhHHHHHHHHHHh
Q 044770 28 EIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIPKDYQNELLYNNLVIACLD 107 (464)
Q Consensus 28 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~ 107 (464)
.+......+.+.|++++|+..|+..+...+..+.... .-....+. .....|+.+..+|.+
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~---------------~~~~~~~~-----~~~~~~~Nla~~~~~ 76 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE---------------KESKASES-----FLLAAFLNLAMCYLK 76 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH---------------HHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch---------------hhhhhcch-----hHHHHHHhHHHHHHH
Confidence 3555667788889999999998887763222111100 00000000 123456667778888
Q ss_pred hCcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 044770 108 KGVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEANDH 179 (464)
Q Consensus 108 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (464)
.|++++|+..++..++.. +.+..+|..+..++...|++++|...|+.+++.. |.+......+-....+.+
T Consensus 77 l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 77 LREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHH
T ss_pred hhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 888888888888888764 4567778888888888888888888888888754 444455554444443433
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.43 E-value=0.00029 Score=57.41 Aligned_cols=122 Identities=16% Similarity=0.099 Sum_probs=78.1
Q ss_pred hhccCChHHHHHHHHHHHhccccCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH-HHHHHHHHHHHhcCChHH
Q 044770 279 FGRIAQVSRAEELWLEMQSVKQLKATEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA-ITYRHLALGCFKSNLVEE 357 (464)
Q Consensus 279 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~ 357 (464)
..+.|++++|...+++..+. .+.|...+..+...|+..|++++|...|+...+ ..|+. ..+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccHH
Confidence 44678899999999988874 345778888999999999999999999998887 45553 333333333333333332
Q ss_pred HHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 044770 358 GFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKA 410 (464)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 410 (464)
+..-.... ...+-.++...+......+.+.|+.++|.+.++++.+.
T Consensus 83 a~~~~~~~-------~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 83 FAQGAATA-------KVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HTTSCCCE-------ECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhh-------hcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22111111 11111223344445566677889999999999888765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.42 E-value=0.0014 Score=48.59 Aligned_cols=95 Identities=7% Similarity=-0.093 Sum_probs=69.2
Q ss_pred HHHhhccCChHHHHHHHHHHHhcccc-C----------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCcc-
Q 044770 276 IEAFGRIAQVSRAEELWLEMQSVKQL-K----------ATEQYNSVISVYCKNGFIDKASGLLKEMSMN-----GCKPN- 338 (464)
Q Consensus 276 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~- 338 (464)
...+...|++++|...|++..+.... | ...+|+.+..+|...|++++|...+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 44556678888888888877652211 1 1356888999999999999999988887642 12222
Q ss_pred ----HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHh
Q 044770 339 ----AITYRHLALGCFKSNLVEEGFKALELGMKLIT 370 (464)
Q Consensus 339 ----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 370 (464)
...+..+..+|...|++++|+..|++++++..
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 23567778889999999999999999987654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.37 E-value=0.00096 Score=48.69 Aligned_cols=34 Identities=6% Similarity=-0.111 Sum_probs=15.7
Q ss_pred ccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHH
Q 044770 177 NDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHA 211 (464)
Q Consensus 177 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 211 (464)
+.+.+++|...|+...+.. +.+...+..+..++.
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~ 42 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLL 42 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHH
Confidence 3444555555555554442 223344444444444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.34 E-value=0.00011 Score=59.95 Aligned_cols=53 Identities=4% Similarity=0.033 Sum_probs=32.4
Q ss_pred HccCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHHhc
Q 044770 176 ANDHNIEGLMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALEKS 229 (464)
Q Consensus 176 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 229 (464)
.+.|++++|+..+++..+.. +-|...+..+...++..|++++|...++...+.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34566666666666666553 224556666666666666666666666666553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=0.0021 Score=42.77 Aligned_cols=80 Identities=14% Similarity=-0.009 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCC-cHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHH
Q 044770 339 AITYRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTP-WLETTLSIIEIFAEKGDVGNAENLFEELKKANYTKYTF 417 (464)
Q Consensus 339 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 417 (464)
...+-.+...+.+.|++++|+..|++++++... .....+ ...+++.|..+|.+.|++++|...++++.+.. |+..
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~--~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~--P~~~ 80 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDE--GEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQ 80 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--TCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh--hhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC--cCCH
Confidence 334446778889999999999999999876542 122223 35678899999999999999999999999864 5533
Q ss_pred -HHHHH
Q 044770 418 -VYNTL 422 (464)
Q Consensus 418 -~~~~l 422 (464)
+++.+
T Consensus 81 ~a~~Nl 86 (95)
T d1tjca_ 81 RANGNL 86 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 55443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.73 E-value=0.04 Score=37.41 Aligned_cols=63 Identities=11% Similarity=-0.056 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 044770 342 YRHLALGCFKSNLVEEGFKALELGMKLITTKKVRSSTPWLETTLSIIEIFAEKGDVGNAENLFEELKKANY 412 (464)
Q Consensus 342 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 412 (464)
+...+.....+|+-+.-.+++.... ..-.|++...-.+..+|.+.|...++.+++.+..+.|+
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~--------kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREIL--------KNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3444555555666666666655542 13444555555666666667777777666666666665
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.0026 Score=42.25 Aligned_cols=30 Identities=13% Similarity=-0.095 Sum_probs=19.7
Q ss_pred ChhchHHHHHHHHhhcchHHHHHHHHHHHH
Q 044770 25 HRGEIFHSINRLRKLQLNKRALEVMEWVIR 54 (464)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~ 54 (464)
+.+....+-..+.+.|+++.|+..|++..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~ 33 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALR 33 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555666667777777777777766655
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.76 E-value=0.18 Score=35.29 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=65.3
Q ss_pred CcHHHHHHHHHHHHHcCCCCchhhHHHHHHHhcCCCCcccHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChhHH
Q 044770 109 GVIKLSLEYMKKMRVLGHSISYLVFNRLIILNSSPGRRKTIPNILRQMKADKVAPHVSTFHILMKIEAN----DHNIEGL 184 (464)
Q Consensus 109 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 184 (464)
.++++|+..|.+..+.| +...+..|. .....+.++|.+.++...+.| +...+..|...|.. ..+.++|
T Consensus 7 kd~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHH
Confidence 36777888888777766 223333332 233456677777777777665 33334444444443 4556778
Q ss_pred HHHHHHHHhCCCCCcHhHHHHHHHHHHh----cChhhHHHHHHHHHHhccC
Q 044770 185 MKVYSDMKRSEVEPNEVSYCILATAHAV----ARLYTVAETYVEALEKSMT 231 (464)
Q Consensus 185 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~ 231 (464)
.++|++..+.| ++.....|...|.. ..+.++|..+|++..+.|.
T Consensus 79 ~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 88888777665 23334444444443 3466677777777666543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.64 E-value=0.37 Score=32.62 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 044770 306 QYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKALELG 365 (464)
Q Consensus 306 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 365 (464)
..+..++.+..+|+-+.-.++++++.+. -.|++.....+..+|.+.|...++.+++.++
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~A 146 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEA 146 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 3444444445555555555555554442 2344444445555555555555555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.16 E-value=0.85 Score=31.56 Aligned_cols=77 Identities=8% Similarity=-0.028 Sum_probs=42.9
Q ss_pred CChHHHHHHHHHHHhccccCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHh----cCC
Q 044770 283 AQVSRAEELWLEMQSVKQLKATEQYNSVISVYCK----NGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFK----SNL 354 (464)
Q Consensus 283 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~ 354 (464)
.+.++|.+.+++..+.| ++..+..|...|.. ..+.++|.++|++..+.|. +.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~---~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND---QDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCc---chHHHHHHHHHHcCCccCCC
Confidence 45566666666666544 33344444444443 3456777777777777653 2333334333333 346
Q ss_pred hHHHHHHHHHh
Q 044770 355 VEEGFKALELG 365 (464)
Q Consensus 355 ~~~a~~~~~~~ 365 (464)
.++|..+|+.+
T Consensus 111 ~~~A~~~~~~A 121 (133)
T d1klxa_ 111 EKQAVKTFEKA 121 (133)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67777777776
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.91 E-value=1 Score=28.81 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=19.8
Q ss_pred HHHHHHHHHhCCCCCcHhHHHHHHHHHHhcChhhHHHHHHHHHH
Q 044770 184 LMKVYSDMKRSEVEPNEVSYCILATAHAVARLYTVAETYVEALE 227 (464)
Q Consensus 184 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 227 (464)
+.+-++.+......|++....+.+++|-+.+++..|.++++-++
T Consensus 25 ~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 25 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333344344444444444444444444444444444444443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.37 E-value=1.3 Score=30.04 Aligned_cols=54 Identities=9% Similarity=-0.039 Sum_probs=35.5
Q ss_pred CChHHHHHHHHHHHhccccCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCccH
Q 044770 283 AQVSRAEELWLEMQSVKQLKA-TEQYNSVISVYCKNGFIDKASGLLKEMSMNGCKPNA 339 (464)
Q Consensus 283 g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 339 (464)
.+.+++..+|+.+.+.+ +.+ ...+-.+.-+|.+.|++++|...++.+++ +.|+.
T Consensus 52 ~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n 106 (124)
T d2pqrb1 52 NDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 106 (124)
T ss_dssp HHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCc
Confidence 44567777777777532 222 24556667777788888888888888777 45554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.07 E-value=1.5 Score=29.63 Aligned_cols=67 Identities=9% Similarity=0.043 Sum_probs=49.2
Q ss_pred ccCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCccH-HHHHHHHHHHHhcCChHHHHHHHHHhHH
Q 044770 300 QLKATEQYNSVISVYCKNG---FIDKASGLLKEMSMNGCKPNA-ITYRHLALGCFKSNLVEEGFKALELGMK 367 (464)
Q Consensus 300 ~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 367 (464)
..+++.+--....++++.. +.++++.++++..+.+ +.+. ..+..+.-+|.+.|++++|...++.+++
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3455556666677777654 4578999999988743 2233 4666777789999999999999999953
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=88.71 E-value=6.5 Score=33.66 Aligned_cols=335 Identities=9% Similarity=-0.025 Sum_probs=181.2
Q ss_pred chhhHHHHhh-cCccChhchHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHhhcChHHHHHHhhhcC
Q 044770 11 GSAFQSWMRE-GFPVHRGEIFHSINRLRKLQLNKRALEVMEWVIRERPYRPKELDYSYLLEFTIKNHGISQGEKLFCCIP 89 (464)
Q Consensus 11 ~~~l~~~~~~-g~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 89 (464)
.++..-+.+. +.|.....-...+..+.+.++++..+..+ ...+.+...-.....+....|+.+.|...+..+=
T Consensus 56 ~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~------~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW 129 (450)
T d1qsaa1 56 VTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS------PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELW 129 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC------CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc------cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3444444444 34444444455677888888887655433 1223445545567777888899888887776543
Q ss_pred CC-CCchhHHHHHHHHHHhhCcHH--HHHHHHHHHHHcC-----------CCCch-hhHHHHHHHhcCCCCcccHHHHHH
Q 044770 90 KD-YQNELLYNNLVIACLDKGVIK--LSLEYMKKMRVLG-----------HSISY-LVFNRLIILNSSPGRRKTIPNILR 154 (464)
Q Consensus 90 ~~-~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~-----------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 154 (464)
.. ......++.+...+...|.+. ...+-+..+...| ++++. ......+.... +...+....
T Consensus 130 ~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~- 205 (450)
T d1qsaa1 130 LTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFA- 205 (450)
T ss_dssp SCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHH-
T ss_pred hcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHHH-
Confidence 32 123334444444444433321 2122222222222 11111 12222222221 122222211
Q ss_pred HHHhCCCCCChhhHHHHHHHHHc--cCChhHHHHHHHHHHhCCCCCcHhHHHHHHH----HHHhcChhhHHHHHHHHHHh
Q 044770 155 QMKADKVAPHVSTFHILMKIEAN--DHNIEGLMKVYSDMKRSEVEPNEVSYCILAT----AHAVARLYTVAETYVEALEK 228 (464)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~----~~~~~~~~~~a~~~~~~~~~ 228 (464)
... .++......+..++.+ ..+.+.+..++......... +...+..+-. .....+..+.+...+.....
T Consensus 206 --~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 280 (450)
T d1qsaa1 206 --RTT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM 280 (450)
T ss_dssp --HHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH
T ss_pred --hcC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcc
Confidence 111 2333333333333333 35778888888887654322 2222222222 22334556677777766654
Q ss_pred ccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhccCCCCchhhHHHHHHHhhccCChHHHHHHHHHHHhc----------
Q 044770 229 SMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQELPNVRSKSYVLAIEAFGRIAQVSRAEELWLEMQSV---------- 298 (464)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------- 298 (464)
.+ .+.......+......+++..+...+..+...+.......--+..++...|+.+.|...|......
T Consensus 281 ~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~ 358 (450)
T d1qsaa1 281 RS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQ 358 (450)
T ss_dssp TC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHH
T ss_pred cc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHH
Confidence 43 344444445556677788999999888887655555555566788888999999999999887642
Q ss_pred --cccCC----------hhh-----HHHHHHHHHhcCChhHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 044770 299 --KQLKA----------TEQ-----YNSVISVYCKNGFIDKASGLLKEMSMNGCKPNAITYRHLALGCFKSNLVEEGFKA 361 (464)
Q Consensus 299 --~~~~~----------~~~-----~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 361 (464)
|.+++ ... -..-+..+...|+...|...|..+... . +......+.....+.|.++.|+..
T Consensus 359 ~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~-~--~~~~~~~la~lA~~~g~~~~aI~a 435 (450)
T d1qsaa1 359 RIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQA 435 (450)
T ss_dssp HTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC-C--CHHHHHHHHHHHHHCCChhHHHHH
Confidence 11100 000 112345566778888888888877753 2 444555666777788888888877
Q ss_pred HHHh
Q 044770 362 LELG 365 (464)
Q Consensus 362 ~~~~ 365 (464)
...+
T Consensus 436 ~~~~ 439 (450)
T d1qsaa1 436 TIAG 439 (450)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6655
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.44 E-value=2.7 Score=26.78 Aligned_cols=44 Identities=14% Similarity=-0.001 Sum_probs=21.5
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhhcChhhHHHHHHHhcc
Q 044770 220 ETYVEALEKSMTGNNWSTLDVLIILYGYLAKGKDLERIWATVQE 263 (464)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (464)
.+-+..+......|++....+.+++|.+.+++..|.++++.++.
T Consensus 26 rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 26 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555555554444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=80.40 E-value=16 Score=31.06 Aligned_cols=44 Identities=11% Similarity=-0.039 Sum_probs=31.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC
Q 044770 386 SIIEIFAEKGDVGNAENLFEELKKANYTKYTFVYNTLIKAYVKAKIN 432 (464)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 432 (464)
..+..+...|...+|...|..+... .+......+.....+.|..
T Consensus 386 ~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~ 429 (450)
T d1qsaa1 386 ARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWW 429 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCh
Confidence 3456677889999999998888754 2445566666667777764
|