Citrus Sinensis ID: 044791
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 623 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZQE5 | 579 | Pentatricopeptide repeat- | yes | no | 0.916 | 0.986 | 0.518 | 1e-161 | |
| Q9SUU7 | 537 | Pentatricopeptide repeat- | no | no | 0.796 | 0.923 | 0.345 | 3e-85 | |
| Q680H3 | 615 | Pentatricopeptide repeat- | no | no | 0.585 | 0.593 | 0.4 | 3e-79 | |
| Q9LIQ7 | 633 | Pentatricopeptide repeat- | no | no | 0.568 | 0.559 | 0.383 | 4e-75 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.648 | 0.517 | 0.335 | 3e-71 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.593 | 0.517 | 0.355 | 2e-69 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.638 | 0.502 | 0.344 | 4e-69 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.523 | 0.414 | 0.401 | 6e-68 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.577 | 0.423 | 0.355 | 1e-67 | |
| Q9SMZ2 | 990 | Pentatricopeptide repeat- | no | no | 0.560 | 0.352 | 0.356 | 2e-67 |
| >sp|Q9ZQE5|PP153_ARATH Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 568 bits (1465), Expect = e-161, Method: Compositional matrix adjust.
Identities = 327/631 (51%), Positives = 396/631 (62%), Gaps = 60/631 (9%)
Query: 1 MASLMAIRCLRSRRHSSLTKVRFTSLQYSYLNHPQNNIIGKTLTLSLAKTLSTSAV--EY 58
M+SLMAIRC R++ + +T L+ S+ TL K LSTSA +Y
Sbjct: 1 MSSLMAIRCARTQ--NIVTIGSLLQLRSSFPRLSSQFHFSGTLNSIPIKHLSTSAAANDY 58
Query: 59 NTPPPQPPQS--PLSDSRAFPDQSNFNNNQWASQQEQNNHLSYPNQGHGYATNQYSSDRN 116
+ Q PQS P R +P QS + SQ + N + P + ++T
Sbjct: 59 H----QNPQSGSPSQHQRPYPPQS------FDSQNQTNTNQRVPQSPNQWSTQHGGQIPQ 108
Query: 117 YPNRGYPNQGQRLPIQGQAYPQQHQPGNHQYQNPSNNQEYQRSNYQGQRSPNQGQVYPHQ 176
Y + + GQR P GQ Q Q + NP + R Y GQR
Sbjct: 109 YGGQNPQHGGQRPPYGGQNPQQGGQMSQYGGHNPQHGG--HRPQYGGQRP---------- 156
Query: 177 QQPHSNQYQNPGNQNFQQPRSPNQ----WNNQQNQGYPQARNSYQQVSPGHQIPNQLNNV 232
QY PGN Q + + QQ Q R+S +Q PNQ+N V
Sbjct: 157 ------QYGGPGNNYQNQNVQQSNQSQYYTPQQQQQPQPPRSS-------NQSPNQMNEV 203
Query: 233 PNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKW 292
PPSV ++ RLCQ K+AIEL+DKG D CF LFE C N K
Sbjct: 204 ------------APPPSVEEVMRLCQRRLYKDAIELLDKGAMPDRECFVLLFESCANLKS 251
Query: 293 YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMING 352
E++KKVHD+FLQS RGD LNN VI M+G+C S+TDA+RVFDHM D+ MDSWHLM+
Sbjct: 252 LEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSSITDAKRVFDHMVDKDMDSWHLMMCA 311
Query: 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP 412
Y+DNG+GD+ L LFE+M K GL+PNE+TFL VF AC + IEEAF+HF+SMK+E GISP
Sbjct: 312 YSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATVGGIEEAFLHFDSMKNEHGISP 371
Query: 413 GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEEL 472
TEHYLG++GVLGKCGHL EA+Q+I + LPFEPTA+FWEA+RNYAR+HGDIDLED+ EEL
Sbjct: 372 KTEHYLGVLGVLGKCGHLVEAEQYI-RDLPFEPTADFWEAMRNYARLHGDIDLEDYMEEL 430
Query: 473 MVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTY 532
MVD+DPSKA KIPTPPPK +++ KSR++EFRN T Y+D+ K A K Y
Sbjct: 431 MVDVDPSKAVINKIPTPPPKSFKETNMVTSKSRILEFRNLTFYKDEAKEMAAK--KGVVY 488
Query: 533 VPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKI 592
VPDTR+VLHDIDQEAKEQALLYHSERLAIAYG+I TP R L IIKNLRVCGDCHN IKI
Sbjct: 489 VPDTRFVLHDIDQEAKEQALLYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKI 548
Query: 593 MSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
MS+I+GR LIVRDNKRFHHFKDGKCSCGDYW
Sbjct: 549 MSKIIGRVLIVRDNKRFHHFKDGKCSCGDYW 579
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUU7|PP346_ARATH Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 316 bits (810), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 186/538 (34%), Positives = 292/538 (54%), Gaps = 42/538 (7%)
Query: 110 QYSSDRNYPNRGYPNQGQRLPIQGQAYPQQHQPGNHQYQNPSNNQE-----YQRSNYQGQ 164
+YSS +Y + G P G P + + Y N N E +Q+++Y+
Sbjct: 18 RYSSLFSYLSTAALRLGFENPTNGN--PMDNSSHHIGYVNGFNGGEQSLGGFQQNSYEQS 75
Query: 165 RSPNQGQVYPHQQQPHSNQYQNPGNQNFQQPRSPNQWNNQQNQGYPQARNSYQQVSPGHQ 224
+P GQ P + YQN N+N Q ++ NQ+NQ + + + G+
Sbjct: 76 LNPVSGQ------NPTNRFYQNGYNRN-QSYGEHSEIINQRNQNWQSSDGCSSYGTTGNG 128
Query: 225 IPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELM----DKGVKADASCF 280
+P + N N+ Q +G S+ +L +C+EGKVK+A+E++ ++G D
Sbjct: 129 VPQENNTGGNHFQQDHSGH----SSLDELDSICREGKVKKAVEIIKSWRNEGYVVDLPRL 184
Query: 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD 340
+ + +LCG+ + + AK VH++ S D+ N +IEMY CGS+ DA VF+ M +
Sbjct: 185 FWIAQLCGDAQALQEAKVVHEFITSSVGISDISAYNSIIEMYSGCGSVEDALTVFNSMPE 244
Query: 341 RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIH 400
R++++W +I +A NG G++ + F + ++ G +P+ + F +F ACG + E +H
Sbjct: 245 RNLETWCGVIRCFAKNGQGEDAIDTFSRFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLH 304
Query: 401 FESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIH 460
FESM E+GI P EHY+ LV +L + G+L EA +F+E EP + WE L N +R+H
Sbjct: 305 FESMYKEYGIIPCMEHYVSLVKMLAEPGYLDEALRFVE---SMEPNVDLWETLMNLSRVH 361
Query: 461 GDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAI------SILDGKSRLVEF----- 509
GD+ L D ++++ LD S+ + + P K + + + G + + +
Sbjct: 362 GDLILGDRCQDMVEQLDASRLNKESKAGLVPVKSSDLVKEKLQRMAKGPNYGIRYMAAGD 421
Query: 510 ----RNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGL 565
N LY + LK M E YVP ++ LHD+DQE+K++ L H+ER A
Sbjct: 422 ISRPENRELYMALKSLK--EHMIEIGYVPLSKLALHDVDQESKDENLFNHNERFAFISTF 479
Query: 566 ISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
+ TPAR+ +R++KNLRVC DCHNA+K+MS+IVGRELI RD KRFHH KDG CSC +YW
Sbjct: 480 LDTPARSLIRVMKNLRVCADCHNALKLMSKIVGRELISRDAKRFHHMKDGVCSCREYW 537
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q680H3|PP170_ARATH Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 296 bits (759), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 156/390 (40%), Positives = 231/390 (59%), Gaps = 25/390 (6%)
Query: 256 LCQEGKVKEAIELMD----KGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD 311
C+ GKVK+A+ +D D S L ++CG + + AK VH S D
Sbjct: 229 FCKHGKVKKALYTIDILASMNYVVDLSRLLRLAKICGEAEGLQEAKTVHGKISASVSHLD 288
Query: 312 LVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRK 371
L N+ ++EMY CG +A VF+ M+++++++W ++I +A NG G++ + +F + ++
Sbjct: 289 LSSNHVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDMFSRFKE 348
Query: 372 LGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLF 431
G P+ Q F +F ACG ++E +HFESM ++GI+P E Y+ LV + G L
Sbjct: 349 EGNIPDGQLFRGIFYACGMLGDVDEGLLHFESMSRDYGIAPSIEDYVSLVEMYALPGFLD 408
Query: 432 EAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKK----IP 487
EA +F+E ++P EP + WE L N +R+HG+++L D+ E++ LDP++ + + IP
Sbjct: 409 EALEFVE-RMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVVEFLDPTRLNKQSREGFIP 467
Query: 488 TPPP-------KKRTAISILDG-KSRLVEFR--NPTLYRDDEKLKALNQMK----ESTYV 533
KKR+ I L G KS + EFR + L +DE + L +K E YV
Sbjct: 468 VKASDVEKESLKKRSGI--LHGVKSSMQEFRAGDTNLPENDELFQLLRNLKMHMVEVGYV 525
Query: 534 PDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIM 593
+TR LHDIDQE+KE LL HSER+A A ++++ R P +IKNLRVC DCHNA+KIM
Sbjct: 526 AETRMALHDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHNALKIM 585
Query: 594 SRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
S IVGRE+I RD KRFH K+G C+C DYW
Sbjct: 586 SDIVGREVITRDIKRFHQMKNGACTCKDYW 615
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 283 bits (723), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 147/383 (38%), Positives = 227/383 (59%), Gaps = 29/383 (7%)
Query: 268 LMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS 327
++ G + + +LF C + + E K VH Y ++S + N +++MY K GS
Sbjct: 253 MLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGS 312
Query: 328 MTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387
+ DAR++FD +A R + SW+ ++ YA +G G E + FE+MR++G++PNE +FL+V +A
Sbjct: 313 IHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTA 372
Query: 388 CGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA 447
C + ++E + ++E MK + GI P HY+ +V +LG+ G L A +FIE+ +P EPTA
Sbjct: 373 CSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEE-MPIEPTA 430
Query: 448 EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADP---------------------KKI 486
W+AL N R+H + +L +A E + +LDP P KK+
Sbjct: 431 AIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKM 490
Query: 487 PTPPPKKRTAISILDGKSRLVEF-----RNPTLYRDDEKLK-ALNQMKESTYVPDTRYVL 540
KK A S ++ ++ + F R+P K + L ++KE YVPDT +V+
Sbjct: 491 KESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVI 550
Query: 541 HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRE 600
+DQ+ +E L YHSE++A+A+ L++TP + + I KN+RVCGDCH AIK+ S++VGRE
Sbjct: 551 VHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGRE 610
Query: 601 LIVRDNKRFHHFKDGKCSCGDYW 623
+IVRD RFHHFKDG CSC DYW
Sbjct: 611 IIVRDTNRFHHFKDGNCSCKDYW 633
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (690), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 149/444 (33%), Positives = 238/444 (53%), Gaps = 40/444 (9%)
Query: 214 NSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELM---- 269
+++ + G+ +++ N ++ P D V A +A Q G EA+ L
Sbjct: 344 STWNTMITGYAQCGKISEAKNLFDKMPKRDPV--SWAAMIAGYSQSGHSFEALRLFVQME 401
Query: 270 DKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMT 329
+G + + S F + C + E K++H ++ + N ++ MY KCGS+
Sbjct: 402 REGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIE 461
Query: 330 DARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG 389
+A +F MA + + SW+ MI GY+ +G G+ L+ FE M++ GL+P++ T +AV SAC
Sbjct: 462 EANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 521
Query: 390 SADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEF 449
+++ +F +M ++G+ P ++HY +V +LG+ G L +A + + +PFEP A
Sbjct: 522 HTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLM-KNMPFEPDAAI 580
Query: 450 WEALRNYARIHGDIDLEDHAEELMVDLDPSKA-----------------DPKKIPTPPPK 492
W L +R+HG+ +L + A + + ++P + D K+
Sbjct: 581 WGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRD 640
Query: 493 KRTAISILDGKSRLVEFRNPTLY---------RDDEKLKALNQ----MKESTYVPDTRYV 539
K + + G S +E +N T DE L + MK++ YV T V
Sbjct: 641 K--GVKKVPGYS-WIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVV 697
Query: 540 LHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGR 599
LHD+++E KE+ + YHSERLA+AYG++ + P+R+IKNLRVC DCHNAIK M+RI GR
Sbjct: 698 LHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGR 757
Query: 600 ELIVRDNKRFHHFKDGKCSCGDYW 623
+I+RDN RFHHFKDG CSCGDYW
Sbjct: 758 LIILRDNNRFHHFKDGSCSCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (674), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/402 (35%), Positives = 225/402 (55%), Gaps = 32/402 (7%)
Query: 253 LARLCQEGKVKEAIELMDKGVKAD----ASCFYTLFELCGNPKWYENAKKVHDYFLQSTI 308
+A Q G+ EA+ L + V A A F ++ C + K++H Y L+
Sbjct: 315 VAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGF 374
Query: 309 RGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQ 368
++ + + +++MY KCG++ AR++FD M SW +I G+A +G G E + LFE+
Sbjct: 375 GSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEE 434
Query: 369 MRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCG 428
M++ G++PN+ F+AV +AC ++EA+ +F SM +G++ EHY + +LG+ G
Sbjct: 435 MKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAG 494
Query: 429 HLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEE--------------LMV 474
L EA FI K+ EPT W L + +H +++L + E LM
Sbjct: 495 KLEEAYNFI-SKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMC 553
Query: 475 DLDPSKADPKKIPT-------PPPKKRTAISILDGKSRLVEF-----RNPTLYRDDEKLK 522
++ S K++ +K+ A S ++ K++ F +P++ + +E LK
Sbjct: 554 NMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLK 613
Query: 523 A-LNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLR 581
A + QM++ YV DT VLHD+D+E K + L HSERLA+A+G+I+T T +R+ KN+R
Sbjct: 614 AVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIR 673
Query: 582 VCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
+C DCH AIK +S+I RE+IVRDN RFHHF G CSCGDYW
Sbjct: 674 ICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (671), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 151/438 (34%), Positives = 221/438 (50%), Gaps = 40/438 (9%)
Query: 225 IPNQLNNVPNNMNQCPAGDQV--------LPPSVADLARLCQEGKVKEAIELMDKGVKAD 276
+ L V + +N+ + ++ LP A ++ Q G ++AI L + K++
Sbjct: 356 VSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSE 415
Query: 277 AS----CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR 332
S + C K VHD + + ++ +I MY KCGS+ +AR
Sbjct: 416 FSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEAR 475
Query: 333 RVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD 392
R+FD M ++ +W+ MI+GY +G G E L +F +M G+ P TFL V AC A
Sbjct: 476 RLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAG 535
Query: 393 AIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEA 452
++E F SM +G P +HY +V +LG+ GHL A QFIE + EP + WE
Sbjct: 536 LVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEA-MSIEPGSSVWET 594
Query: 453 LRNYARIHGDIDLEDHAEELMVDLDPS------------KAD---PKKIPTPPPKKRTAI 497
L RIH D +L E + +LDP AD P+ K+ +
Sbjct: 595 LLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKL 654
Query: 498 SILDGKSRLVEFRNPTLYRDD-----------EKLKAL-NQMKESTYVPDTRYVLHDIDQ 545
+ G + + P ++ EKL+ L +M+E+ Y P+T LHD+++
Sbjct: 655 AKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEE 714
Query: 546 EAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRD 605
E +E + HSERLAIA+GLI+T T +RIIKNLRVC DCH K++S+I R ++VRD
Sbjct: 715 EERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRD 774
Query: 606 NKRFHHFKDGKCSCGDYW 623
RFHHFKDG CSCGDYW
Sbjct: 775 ANRFHHFKDGVCSCGDYW 792
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (661), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 144/359 (40%), Positives = 205/359 (57%), Gaps = 33/359 (9%)
Query: 295 NAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHM-ADRSMDSWHLMINGY 353
+ K++H ++S + ++N +I MY K G++T A R FD + +R SW MI
Sbjct: 431 HGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIAL 490
Query: 354 ADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG 413
A +G +E L+LFE M GL+P+ T++ VFSAC A + + +F+ MK I P
Sbjct: 491 AQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPT 550
Query: 414 TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELM 473
HY +V + G+ G L EAQ+FIE K+P EP W +L + R+H +IDL A E +
Sbjct: 551 LSHYACMVDLFGRAGLLQEAQEFIE-KMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERL 609
Query: 474 VDLDPSKADP---------------------KKIPTPPPKKRTAISILDGKSRLVEF--- 509
+ L+P + K + KK S ++ K ++ F
Sbjct: 610 LLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVE 669
Query: 510 -----RNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYG 564
+Y +K+ +++K+ YVPDT VLHD+++E KEQ L +HSE+LAIA+G
Sbjct: 670 DGTHPEKNEIYMTMKKI--WDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFG 727
Query: 565 LISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
LISTP +T LRI+KNLRVC DCH AIK +S++VGRE+IVRD RFHHFKDG CSC DYW
Sbjct: 728 LISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (659), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 144/405 (35%), Positives = 220/405 (54%), Gaps = 45/405 (11%)
Query: 258 QEGKVKEAIELMDKGVKADASCFYTLFEL------CGNPKWYENAKKVHDYFLQSTIRGD 311
Q G +A+EL+ + + D F + C + K++H Y L++
Sbjct: 452 QHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAV 511
Query: 312 -LVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMR 370
L ++N +I+MY KCGS++DAR VFD+M ++ +W ++ GY +G G+E L +F++MR
Sbjct: 512 PLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMR 571
Query: 371 KLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHL 430
++G + + T L V AC + I++ +F MK+ FG+SPG EHY LV +LG+ G L
Sbjct: 572 RIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRL 631
Query: 431 FEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDL----DPSKA----- 481
A + IE+ +P EP W A + RIHG ++L ++A E + +L D S
Sbjct: 632 NAALRLIEE-MPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNL 690
Query: 482 --------DPKKIPT----PPPKKRTAISILDGKSRLVEFRNPTLYRDDEK--------- 520
D +I + KKR S ++G T + D+
Sbjct: 691 YANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIK-----GTTTFFVGDKTHPHAKEIYQ 745
Query: 521 --LKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIK 578
L + ++K+ YVP+T + LHD+D E K+ L HSE+LA+AYG+++TP +RI K
Sbjct: 746 VLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITK 805
Query: 579 NLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
NLRVCGDCH A MSRI+ ++I+RD+ RFHHFK+G CSC YW
Sbjct: 806 NLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (657), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 136/381 (35%), Positives = 212/381 (55%), Gaps = 32/381 (8%)
Query: 272 GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDA 331
GV D TL + E +++H L+ D + +++MY KCGS+ DA
Sbjct: 613 GVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDA 672
Query: 332 RRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA 391
+F + ++ +W+ M+ G A +G G E LQLF+QM+ LG++P++ TF+ V SAC +
Sbjct: 673 YCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHS 732
Query: 392 DAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWE 451
+ EA+ H SM ++GI P EHY L LG+ G + +A+ IE + E +A +
Sbjct: 733 GLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIES-MSMEASASMYR 791
Query: 452 ALRNYARIHGDIDLEDHAEELMVDLDP----------------SKADPKKIPTP-----P 490
L R+ GD + +++L+P SK D K+
Sbjct: 792 TLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHK 851
Query: 491 PKKRTAISILDGKSRLVEF--------RNPTLYRDDEKLKALNQMKESTYVPDTRYVLHD 542
KK S ++ K+++ F + +YR + + + +K+ YVP+T + L D
Sbjct: 852 VKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDM--IRDIKQEGYVPETDFTLVD 909
Query: 543 IDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELI 602
+++E KE+AL YHSE+LA+A+GL+STP TP+R+IKNLRVCGDCHNA+K ++++ RE++
Sbjct: 910 VEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIV 969
Query: 603 VRDNKRFHHFKDGKCSCGDYW 623
+RD RFH FKDG CSCGDYW
Sbjct: 970 LRDANRFHRFKDGICSCGDYW 990
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 623 | ||||||
| 225428796 | 593 | PREDICTED: pentatricopeptide repeat-cont | 0.926 | 0.973 | 0.622 | 0.0 | |
| 147834943 | 627 | hypothetical protein VITISV_021220 [Viti | 0.863 | 0.858 | 0.639 | 0.0 | |
| 449438679 | 688 | PREDICTED: pentatricopeptide repeat-cont | 0.969 | 0.877 | 0.545 | 0.0 | |
| 449519292 | 588 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.886 | 0.938 | 0.553 | 0.0 | |
| 357475405 | 565 | Pentatricopeptide repeat-containing prot | 0.678 | 0.748 | 0.708 | 0.0 | |
| 388508872 | 565 | unknown [Medicago truncatula] | 0.678 | 0.748 | 0.708 | 0.0 | |
| 356500039 | 591 | PREDICTED: pentatricopeptide repeat-cont | 0.698 | 0.736 | 0.682 | 1e-175 | |
| 356521500 | 588 | PREDICTED: pentatricopeptide repeat-cont | 0.730 | 0.773 | 0.660 | 1e-173 | |
| 18397896 | 579 | pentatricopeptide repeat-containing prot | 0.916 | 0.986 | 0.518 | 1e-159 | |
| 297836184 | 548 | hypothetical protein ARALYDRAFT_480424 [ | 0.878 | 0.998 | 0.504 | 1e-157 |
| >gi|225428796|ref|XP_002285135.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15690 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/639 (62%), Positives = 460/639 (71%), Gaps = 62/639 (9%)
Query: 1 MASLMAIRCLRSRRHSSLTKVRFTSLQYSYLNHPQNNIIGKTLTLSLAKTLSTSAV--EY 58
MASL++IR R+ S L+KV Y +H +L KTLSTSAV +Y
Sbjct: 1 MASLLSIRRARTPLFSFLSKV-----PSPYSSH---------FIFTLTKTLSTSAVPNDY 46
Query: 59 NTPPPQPPQSPLSDSRAFPDQSNFNNNQWASQQEQNNHLSYPNQGHGYATNQYSSDRNYP 118
P QPP P R F DQ N + N W SQ + ++ + N G +++YP
Sbjct: 47 QRPQQQPPSEP----RDFQDQRNPSYN-WNSQTQSQSYPQHMNYG--------DQNQSYP 93
Query: 119 NRGYPNQGQRLPIQGQAYPQQHQPGNHQYQNPS--NNQEYQRSNYQGQR-----SPNQGQ 171
NRGYPNQGQ YPQ P Q P+ Q R N+Q Q +P+ GQ
Sbjct: 94 NRGYPNQGQ-------GYPQHENPNQWNRQTPTYPQPQNPSRPNHQNQYYPPTGNPSLGQ 146
Query: 172 VYPHQQQPH--SNQYQNPG-----NQNFQQPRSPNQWNNQQNQGYPQARNSYQQVSPGHQ 224
YP Q+ P+ + Q+QNP NQN+ QP S N +NQ NQ YP + Q +Q
Sbjct: 147 GYPQQRSPNQWNPQHQNPSHLNNQNQNYPQPGSRNLPSNQ-NQSYPHQGSPSQW---NNQ 202
Query: 225 IPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADASCFYTLF 284
PNQ V N ++ P PSVADL LCQEGKVKEA+ELM+KGV+ADA CFY LF
Sbjct: 203 NPNQAQIVENQVSHAP-------PSVADLMNLCQEGKVKEAVELMEKGVRADAQCFYALF 255
Query: 285 ELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD 344
CG+PK E AKKVHD+FLQST R DL LNNKV+EMYG CGSMTDARRVFDHMA+R MD
Sbjct: 256 NSCGSPKLLEEAKKVHDFFLQSTFRSDLQLNNKVLEMYGNCGSMTDARRVFDHMANRDMD 315
Query: 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESM 404
SWHLMINGYA+N +GD+GLQL+EQMRKLGL+PNEQTFLAV S C SA+A+EE FIHFESM
Sbjct: 316 SWHLMINGYANNAMGDDGLQLYEQMRKLGLEPNEQTFLAVLSTCASAEAVEEGFIHFESM 375
Query: 405 KSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDID 464
K+E+GI+P EHY+G++ VLGK GH+ EA++FIEQ +P EP+A WEAL NYA+IHGDID
Sbjct: 376 KTEYGITPTFEHYVGIIDVLGKSGHVIEAKEFIEQ-MPVEPSAVVWEALMNYAKIHGDID 434
Query: 465 LEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKAL 524
LEDHAEELMV LDP KA K PTPPPKKRTAI++LDGK+RL EFRNPTLY+DDEKLK+L
Sbjct: 435 LEDHAEELMVALDPLKAVANKTPTPPPKKRTAINMLDGKNRLSEFRNPTLYKDDEKLKSL 494
Query: 525 NQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCG 584
N MKE+ YVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCG
Sbjct: 495 NGMKEAGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCG 554
Query: 585 DCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
DCHNAIKIMS+IVGRELIVRDNKRFHHFKDGKCSCGDYW
Sbjct: 555 DCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSCGDYW 593
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147834943|emb|CAN70199.1| hypothetical protein VITISV_021220 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/608 (63%), Positives = 437/608 (71%), Gaps = 70/608 (11%)
Query: 43 LTLSLAKTLSTSAV--EYNTPPPQPPQSPLSDSRAFPDQSNFNNNQWASQQEQNNHLSYP 100
+L KTLSTSAV +Y P QPP P R F Q N N N W SQ + ++ +
Sbjct: 63 FIFTLTKTLSTSAVPNDYQRPQQQPPSEP----RDFQHQRNPNYN-WNSQTQSQSYPQHM 117
Query: 101 NQGHGYATNQYSSDRNYPNRGYPNQGQRLPIQGQAYPQQHQPGNHQYQNPSNNQEYQRSN 160
N G +++YPNRGYPN QGQ YPQ P Q P+
Sbjct: 118 NYG--------EQNQSYPNRGYPN-------QGQGYPQHGSPNQWNRQTPT--------- 153
Query: 161 YQGQRSPNQGQVYPHQQQP----HSNQYQNP-GN----QNFQQPRSPNQWN--------- 202
YP Q P H NQY P GN Q + Q RSPNQWN
Sbjct: 154 ------------YPQPQNPSRPNHQNQYYPPTGNPSLGQGYPQQRSPNQWNPQHQNPSPL 201
Query: 203 NQQNQGYPQ--ARN--SYQQVSPGHQ-IPNQLNNVPNNMNQCPAGDQV--LPPSVADLAR 255
N QN+ YPQ +RN S Q S HQ P+Q NN N Q +QV PPSVADL
Sbjct: 202 NNQNENYPQPGSRNLPSNQNQSYPHQGSPSQWNNQNTNQAQI-VENQVSHAPPSVADLMN 260
Query: 256 LCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLN 315
LCQEGKVKEA+ELM+KGV+ADA CFY LF CG+PK E AKKVHD+FLQST R DL LN
Sbjct: 261 LCQEGKVKEAVELMEKGVRADAQCFYALFNSCGSPKLLEEAKKVHDFFLQSTFRSDLQLN 320
Query: 316 NKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ 375
NKV+EMYG CGSMTDARRVFDHM +R MDSWHLMINGYA+N +GD+GLQL+EQMRKLGL+
Sbjct: 321 NKVLEMYGNCGSMTDARRVFDHMTNRDMDSWHLMINGYANNAMGDDGLQLYEQMRKLGLE 380
Query: 376 PNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQ 435
PNEQTFLAV S C SA+A+EE FIHFESMK+E+GI+P EHY+G++ VLGK GH+ EA++
Sbjct: 381 PNEQTFLAVLSTCASAEAVEEGFIHFESMKTEYGITPTFEHYVGIIDVLGKSGHVIEAKE 440
Query: 436 FIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRT 495
FIEQ +P EP+A WEAL NYA+IHGDIDLEDHAEELMV LDP KA K PTPPPKKRT
Sbjct: 441 FIEQ-MPVEPSAVVWEALMNYAKIHGDIDLEDHAEELMVALDPLKAVANKTPTPPPKKRT 499
Query: 496 AISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYH 555
AI++LDGK+RL EFRNPTLY+DDEKLK+LN MKE+ YVPDTRYVLHDIDQEAKEQALLYH
Sbjct: 500 AINMLDGKNRLSEFRNPTLYKDDEKLKSLNGMKEAGYVPDTRYVLHDIDQEAKEQALLYH 559
Query: 556 SERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDG 615
SERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMS+IVGRELIVRDNKRFHHFKDG
Sbjct: 560 SERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDG 619
Query: 616 KCSCGDYW 623
KCSCGDYW
Sbjct: 620 KCSCGDYW 627
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438679|ref|XP_004137115.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/707 (54%), Positives = 463/707 (65%), Gaps = 103/707 (14%)
Query: 1 MASLMAIRCLRSRRHSSLTKVRF---TSLQYSYLNHPQNNIIGKTLTLSLAKTLSTSAV- 56
MASLMA+R R+ S KVR+ + +++ N T +L KTLSTSA+
Sbjct: 1 MASLMAVRRARTPIIVSSFKVRYPLSSCFTFTFRNQ----------TETLIKTLSTSAIP 50
Query: 57 -----------------------EYNTPPPQPPQSPLSDSRAFPDQSNFNNNQWASQQEQ 93
++ +P P S + ++F S F N +A Q
Sbjct: 51 NDFSNFPSSPQQPSSSSPSYRQPQWGSPSQVNPPSENFNHQSF---SEFQNRDYAQQGSH 107
Query: 94 NNHLSY--------PN-----QGHGYATNQYSSDRNYPNRGYPNQGQRLPIQGQAYPQQH 140
N L+Y PN QG Y+ ++ N PN+ Q P Q++PQ
Sbjct: 108 GNQLNYRSQHQSPQPNPGFSRQGQSYSQVGKTNSWNPPNQSSQYQNPSQPPPNQSFPQYQ 167
Query: 141 QPGNH-------QYQNPSN----NQEYQRSNYQGQRSPNQ-GQVYPHQQQP--------- 179
P QYQNPS NQ Y S YQ PN Q YP Q P
Sbjct: 168 NPSQPPPNQSYPQYQNPSQTNPPNQSY--SQYQNPSQPNAPNQRYPQYQNPSQPNPPNQS 225
Query: 180 --------HSN-------QYQNPG-----NQNFQQPRSPNQWNNQQNQGYPQARNSYQQV 219
SN QYQNP N N+QQ R PNQWNNQ NQ +PQ +
Sbjct: 226 HPQYQNPSQSNPPNQSYPQYQNPSQPNPPNFNYQQQRGPNQWNNQ-NQEHPQFGRP-EHR 283
Query: 220 SPGHQIPNQLNN---VPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKAD 276
+P + NQLNN + + Q A + ++ P + +L R C EGK+KEA+EL+ +GVKAD
Sbjct: 284 NPQAENSNQLNNQAGIQRDGTQNQAPNALVSP-IDELRRFCGEGKLKEAVELLKQGVKAD 342
Query: 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFD 336
CF+ LFELCG K ++NAK VHDYFLQS+ R DL LNN+V+EMYG+CGSM+DARRVFD
Sbjct: 343 VDCFHLLFELCGKSKSFDNAKVVHDYFLQSSCRSDLQLNNEVLEMYGRCGSMSDARRVFD 402
Query: 337 HMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEE 396
HM DRS+DSWHLM+ GYADNGLGDEGL+LFE M+ LGLQPN QTFL V SAC SA+A+EE
Sbjct: 403 HMPDRSIDSWHLMMKGYADNGLGDEGLELFENMKNLGLQPNSQTFLYVMSACASANAVEE 462
Query: 397 AFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNY 456
F++FESMK+++ I+P T HYLGL+G+LG+ GH+ EA +++E KLP EPT E WE L+NY
Sbjct: 463 GFLYFESMKNDYHITPDTNHYLGLLGILGEPGHIHEAFEYVE-KLPMEPTVEVWETLKNY 521
Query: 457 ARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYR 516
ARIHGD+DLED+AEEL+VDLDP+KA KI TPPPKKR+AIS+LDGK+R+VEFRNPTLY+
Sbjct: 522 ARIHGDVDLEDYAEELIVDLDPTKAVSNKISTPPPKKRSAISMLDGKNRIVEFRNPTLYK 581
Query: 517 DDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRI 576
DDEKLKAL MKE YVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRI
Sbjct: 582 DDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRI 641
Query: 577 IKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
IKNLR+CGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW
Sbjct: 642 IKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 688
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449519292|ref|XP_004166669.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g15690-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/659 (55%), Positives = 441/659 (66%), Gaps = 107/659 (16%)
Query: 1 MASLMAIRCLRSRRHSSLTKVRF---TSLQYSYLNHPQNNIIGKTLTLSLAKTLSTSAV- 56
MASLMA+R R+ S KVR+ + +++ N T +L KTLSTSA+
Sbjct: 1 MASLMAVRRARTPIIVSSFKVRYPLSSCFTFTFRNQ----------TETLIKTLSTSAIP 50
Query: 57 -----------------------EYNTPPPQPPQSPLSDSRAFPDQSNFNNNQWASQQEQ 93
++ +P P S + ++F S F N +A Q
Sbjct: 51 NDFSNFPSSPQQPSSSSPSYRQPQWGSPSQVNPPSENFNHQSF---SEFQNRDYAQQGSH 107
Query: 94 NNHLSYPNQGHGYATNQYSSDRNYPNRGYPNQGQRL--PIQGQAYPQQHQPGNHQYQNPS 151
N L+Y +Q+ S + PN G+ QGQ P+ Q+YPQ YQNPS
Sbjct: 108 GNQLNY--------RSQHQSPQ--PNPGFSRQGQSYSQPLPNQSYPQ--------YQNPS 149
Query: 152 NNQEYQRSNYQGQRSPNQGQVYPHQQQPHSNQYQNPGNQNFQQPRSPNQWNNQQNQ---- 207
QP NP N N+QQ R PNQWNNQ +
Sbjct: 150 --------------------------QP------NPPNFNYQQQRGPNQWNNQNQEHPQF 177
Query: 208 GYPQARNSYQQVSPGHQIPNQLNN---VPNNMNQCPAGDQVLPPSVADLARLCQEGKVKE 264
G P+ RN P + NQLNN + + Q A + ++ P + +L R C EGK+KE
Sbjct: 178 GRPEHRN------PQAENSNQLNNQAGIQRDGTQNQAPNALVSP-IDELRRFCGEGKLKE 230
Query: 265 AIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324
A+EL+ +GVKAD CF+ LFELCG K ++NAK VHDYFLQS+ R DL LNN+V+EMYG+
Sbjct: 231 AVELLKQGVKADVDCFHLLFELCGKSKSFDNAKVVHDYFLQSSCRSDLQLNNEVLEMYGR 290
Query: 325 CGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV 384
CGSM+DARRVFDHM DRS+DSWHLM+ GYADNGLGDEGL+LFE M+ LGLQPN QTFL V
Sbjct: 291 CGSMSDARRVFDHMPDRSIDSWHLMMKGYADNGLGDEGLELFENMKNLGLQPNSQTFLYV 350
Query: 385 FSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE 444
SAC SA+A+EE F++FESMK+++ I+P T HYLGL+G+LG+ GH+ EA +++E KLP E
Sbjct: 351 MSACASANAVEEGFLYFESMKNDYHITPDTNHYLGLLGILGEPGHIHEAFEYVE-KLPME 409
Query: 445 PTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKS 504
PT E WE L+NYARIHGD+DLED+AEEL+VDLDP+KA KI TPPPK +AIS+LDGK+
Sbjct: 410 PTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNKISTPPPKNXSAISMLDGKN 469
Query: 505 RLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYG 564
R+VEFRNPTLY+DD KLKAL MKE YVPDTRYVLHDIDQEAKEQALLYHSERLAIAYG
Sbjct: 470 RIVEFRNPTLYKDDXKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYG 529
Query: 565 LISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
LISTPARTPLRIIKNLR+CGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW
Sbjct: 530 LISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 588
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357475405|ref|XP_003607988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355509043|gb|AES90185.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/435 (70%), Positives = 356/435 (81%), Gaps = 12/435 (2%)
Query: 189 NQNFQQPRSPNQWNNQQNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPP 248
N NFQ P PN+ NQ NQ PQ N Q +P +Q PN Q P PP
Sbjct: 143 NPNFQPPNGPNRGINQ-NQWNPQNGNLNQFQNPNNQF-----QTPNVQEQAPP-----PP 191
Query: 249 SVADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTI 308
S+ DL R CQEGKVKEA+ELM+KG+KADA+CF LF+LCG K E+AKKVHDYFLQST
Sbjct: 192 SIVDLTRFCQEGKVKEALELMEKGIKADANCFEILFDLCGKSKSVEDAKKVHDYFLQSTF 251
Query: 309 RGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQ 368
R D ++NKVIEMYG C SMTDARRVFDHM +R+MDSWH+MI GYA++ +GDEGLQLFEQ
Sbjct: 252 RSDFKMHNKVIEMYGNCKSMTDARRVFDHMPNRNMDSWHMMIRGYANSTMGDEGLQLFEQ 311
Query: 369 MRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCG 428
M +LGL+ +T LAV SACGSA+A+E+A+I+ ESMKS++GI PG EHY+GL+ VLG+ G
Sbjct: 312 MNELGLEITSETMLAVLSACGSAEAVEDAYIYLESMKSKYGIEPGVEHYMGLLDVLGQSG 371
Query: 429 HLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPT 488
+L EA++FIEQ LPFEPT +E L+NYARIHGD+DLEDH EEL+V LDPSKA KIPT
Sbjct: 372 YLKEAEEFIEQ-LPFEPTVTVFETLKNYARIHGDVDLEDHVEELIVSLDPSKAVANKIPT 430
Query: 489 PPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAK 548
PPPKK TAIS+LDGK+R++E++NPTLY+DDEKL A+N MK++ YVPDTRYVLHDIDQEAK
Sbjct: 431 PPPKKYTAISMLDGKNRIIEYKNPTLYKDDEKLIAMNSMKDAGYVPDTRYVLHDIDQEAK 490
Query: 549 EQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKR 608
EQALLYHSERLAIAYGLISTP RTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKR
Sbjct: 491 EQALLYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKR 550
Query: 609 FHHFKDGKCSCGDYW 623
FHHFKDGKCSCGDYW
Sbjct: 551 FHHFKDGKCSCGDYW 565
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388508872|gb|AFK42502.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/435 (70%), Positives = 356/435 (81%), Gaps = 12/435 (2%)
Query: 189 NQNFQQPRSPNQWNNQQNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPP 248
N NFQ P PN+ NQ NQ PQ N Q +P +Q PN Q P PP
Sbjct: 143 NPNFQPPNGPNRGINQ-NQWNPQNGNLNQFQNPNNQF-----QTPNVQEQAPP-----PP 191
Query: 249 SVADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTI 308
S+ DL R CQEGKVKEA+ELM+KG+KADA+CF LF+LCG K E+AKKVHDYFLQST
Sbjct: 192 SIVDLTRFCQEGKVKEALELMEKGIKADANCFEILFDLCGKSKSVEDAKKVHDYFLQSTF 251
Query: 309 RGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQ 368
R D ++NKVIEMYG C SMTDARRVFDHM +R+MDSWH+MI GYA++ +GDEGLQLFEQ
Sbjct: 252 RSDFKMHNKVIEMYGNCKSMTDARRVFDHMPNRNMDSWHMMIRGYANSTMGDEGLQLFEQ 311
Query: 369 MRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCG 428
M +LGL+ +T LAV SACGSA+A+E+A+I+ ESMKS++GI PG EHY+GL+ VLG+ G
Sbjct: 312 MNELGLEITSETMLAVLSACGSAEAVEDAYIYLESMKSKYGIEPGVEHYMGLLDVLGQSG 371
Query: 429 HLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPT 488
+L EA++FIEQ LPFEPT +E L+NYARIHGD+DLEDH EEL+V LDPSKA KIPT
Sbjct: 372 YLKEAEEFIEQ-LPFEPTVTVFETLKNYARIHGDVDLEDHVEELIVSLDPSKAVANKIPT 430
Query: 489 PPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAK 548
PPPKK TAIS+LDGK+R++E++NPTLY+DDEKL A+N MK++ YVPDTRYVLHDIDQEAK
Sbjct: 431 PPPKKYTAISMLDGKNRIIEYKNPTLYKDDEKLIAMNSMKDAGYVPDTRYVLHDIDQEAK 490
Query: 549 EQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKR 608
EQALLYHSERLAIAYGLISTP RTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKR
Sbjct: 491 EQALLYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKR 550
Query: 609 FHHFKDGKCSCGDYW 623
FHHFKDGKCSCGDYW
Sbjct: 551 FHHFKDGKCSCGDYW 565
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500039|ref|XP_003518842.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1605), Expect = e-175, Method: Compositional matrix adjust.
Identities = 310/454 (68%), Positives = 358/454 (78%), Gaps = 19/454 (4%)
Query: 184 YQNPGNQN--FQQPRSPNQWNNQQNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPA 241
+Q P +QN F+ P +PN+WNNQ P A N + S G NQ N N +N A
Sbjct: 143 FQTPTSQNPNFRPPTTPNRWNNQN----PAAPNQWNPRSQGFPNSNQFQNPNNQLNNNQA 198
Query: 242 GDQV------------LPPSVADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGN 289
Q LPPS+ DL RLC+EGKVKEAIELMDKGVKADA CF LF+LCG
Sbjct: 199 SIQAQTHPAPPPPPHPLPPSITDLTRLCKEGKVKEAIELMDKGVKADAGCFDLLFDLCGQ 258
Query: 290 PKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLM 349
K E+AKK HD+FLQST R DL LNNKVIEMYG C SMTDARRVFDHM +R M SWHLM
Sbjct: 259 SKSLEDAKKAHDHFLQSTFRSDLTLNNKVIEMYGNCKSMTDARRVFDHMPNRDMGSWHLM 318
Query: 350 INGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFG 409
+ GYA N GD+ LQLFEQM +LGL+ +T LAV SAC SA+ +E+AF+HFESMKS++G
Sbjct: 319 LRGYAYNTNGDDALQLFEQMNELGLEITSETLLAVLSACASAEDVEDAFLHFESMKSKYG 378
Query: 410 ISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHA 469
I PG EHY+GL+ VLG+ +L EA++FI+Q LPFEPT WE L++YAR+HGD+DLED+
Sbjct: 379 IEPGVEHYMGLLDVLGQSAYLKEAEEFIDQ-LPFEPTVAVWEKLKHYARVHGDVDLEDYT 437
Query: 470 EELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKE 529
EEL+V LDPSKA KIPTPPPKK TAI++LDG++R++E++NPTLY+DDEKLKAL+ MKE
Sbjct: 438 EELIVSLDPSKAVANKIPTPPPKKYTAINMLDGRNRIIEYKNPTLYKDDEKLKALSGMKE 497
Query: 530 STYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNA 589
+ YVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTP RTPLRIIKNLRVCGDCHNA
Sbjct: 498 TGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDCHNA 557
Query: 590 IKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
IKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW
Sbjct: 558 IKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 591
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521500|ref|XP_003529393.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1587), Expect = e-173, Method: Compositional matrix adjust.
Identities = 305/462 (66%), Positives = 356/462 (77%), Gaps = 7/462 (1%)
Query: 168 NQGQVYPHQQQPHSNQYQNPGNQN--FQQPRSPNQWNNQQ----NQGYPQARNSYQQVSP 221
N Q P P + +Q P +QN F+ P +PN+WNNQ NQ P+++
Sbjct: 128 NHNQWNPQPTPPQNLNFQTPTSQNPNFRIPTTPNRWNNQNLATPNQWNPRSQGFPNPNQF 187
Query: 222 GHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADASCFY 281
+ NN + +Q PPS+ DL RLC+EGKVKEAIELMDKGVKADA CF
Sbjct: 188 QNPNNQLNNNQTSVQSQASPAPPPQPPSITDLTRLCREGKVKEAIELMDKGVKADAGCFA 247
Query: 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR 341
LF+ CG K E+AKK HD+FLQST R DL LNNKVIEMYG C SMTDARRVFDHM +R
Sbjct: 248 LLFDSCGQSKSLEDAKKAHDHFLQSTFRSDLTLNNKVIEMYGNCKSMTDARRVFDHMPNR 307
Query: 342 SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHF 401
MDSWHLM+ GYA+N GDE LQLFEQM +LGL+ +T LAV SAC SA+ +E+AF+HF
Sbjct: 308 DMDSWHLMMRGYANNTNGDEALQLFEQMNELGLEITSETLLAVLSACASAEDVEDAFLHF 367
Query: 402 ESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHG 461
ESMKS++GI P HY+GL+ VLG+ +L EA++FI+Q LPFEPT WE L++YAR HG
Sbjct: 368 ESMKSKYGIEPVVGHYMGLLDVLGQSAYLKEAEEFIDQ-LPFEPTVAVWEKLKHYARAHG 426
Query: 462 DIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKL 521
D DLED+ EEL+V LDPSKA KIP PPPKK TAI++LDG++R++E++NPTLY+DDEKL
Sbjct: 427 DFDLEDYTEELIVSLDPSKAVANKIPMPPPKKYTAINMLDGRNRIIEYKNPTLYKDDEKL 486
Query: 522 KALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLR 581
KAL+ MKE+ YVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTP RTPLRIIKNLR
Sbjct: 487 KALSGMKEAGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPPRTPLRIIKNLR 546
Query: 582 VCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
VCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW
Sbjct: 547 VCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 588
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18397896|ref|NP_565377.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75216221|sp|Q9ZQE5.2|PP153_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g15690 gi|14335136|gb|AAK59848.1| At2g15690/F9O13.24 [Arabidopsis thaliana] gi|20197709|gb|AAD17413.2| Expressed protein [Arabidopsis thaliana] gi|29028728|gb|AAO64743.1| At2g15690/F9O13.24 [Arabidopsis thaliana] gi|330251336|gb|AEC06430.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 327/631 (51%), Positives = 396/631 (62%), Gaps = 60/631 (9%)
Query: 1 MASLMAIRCLRSRRHSSLTKVRFTSLQYSYLNHPQNNIIGKTLTLSLAKTLSTSAV--EY 58
M+SLMAIRC R++ + +T L+ S+ TL K LSTSA +Y
Sbjct: 1 MSSLMAIRCARTQ--NIVTIGSLLQLRSSFPRLSSQFHFSGTLNSIPIKHLSTSAAANDY 58
Query: 59 NTPPPQPPQS--PLSDSRAFPDQSNFNNNQWASQQEQNNHLSYPNQGHGYATNQYSSDRN 116
+ Q PQS P R +P QS + SQ + N + P + ++T
Sbjct: 59 H----QNPQSGSPSQHQRPYPPQS------FDSQNQTNTNQRVPQSPNQWSTQHGGQIPQ 108
Query: 117 YPNRGYPNQGQRLPIQGQAYPQQHQPGNHQYQNPSNNQEYQRSNYQGQRSPNQGQVYPHQ 176
Y + + GQR P GQ Q Q + NP + R Y GQR
Sbjct: 109 YGGQNPQHGGQRPPYGGQNPQQGGQMSQYGGHNPQHGG--HRPQYGGQRP---------- 156
Query: 177 QQPHSNQYQNPGNQNFQQPRSPNQ----WNNQQNQGYPQARNSYQQVSPGHQIPNQLNNV 232
QY PGN Q + + QQ Q R+S +Q PNQ+N V
Sbjct: 157 ------QYGGPGNNYQNQNVQQSNQSQYYTPQQQQQPQPPRSS-------NQSPNQMNEV 203
Query: 233 PNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKW 292
PPSV ++ RLCQ K+AIEL+DKG D CF LFE C N K
Sbjct: 204 ------------APPPSVEEVMRLCQRRLYKDAIELLDKGAMPDRECFVLLFESCANLKS 251
Query: 293 YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMING 352
E++KKVHD+FLQS RGD LNN VI M+G+C S+TDA+RVFDHM D+ MDSWHLM+
Sbjct: 252 LEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSSITDAKRVFDHMVDKDMDSWHLMMCA 311
Query: 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP 412
Y+DNG+GD+ L LFE+M K GL+PNE+TFL VF AC + IEEAF+HF+SMK+E GISP
Sbjct: 312 YSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATVGGIEEAFLHFDSMKNEHGISP 371
Query: 413 GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEEL 472
TEHYLG++GVLGKCGHL EA+Q+I + LPFEPTA+FWEA+RNYAR+HGDIDLED+ EEL
Sbjct: 372 KTEHYLGVLGVLGKCGHLVEAEQYI-RDLPFEPTADFWEAMRNYARLHGDIDLEDYMEEL 430
Query: 473 MVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTY 532
MVD+DPSKA KIPTPPPK +++ KSR++EFRN T Y+D+ K A K Y
Sbjct: 431 MVDVDPSKAVINKIPTPPPKSFKETNMVTSKSRILEFRNLTFYKDEAKEMAAK--KGVVY 488
Query: 533 VPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKI 592
VPDTR+VLHDIDQEAKEQALLYHSERLAIAYG+I TP R L IIKNLRVCGDCHN IKI
Sbjct: 489 VPDTRFVLHDIDQEAKEQALLYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKI 548
Query: 593 MSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
MS+I+GR LIVRDNKRFHHFKDGKCSCGDYW
Sbjct: 549 MSKIIGRVLIVRDNKRFHHFKDGKCSCGDYW 579
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297836184|ref|XP_002885974.1| hypothetical protein ARALYDRAFT_480424 [Arabidopsis lyrata subsp. lyrata] gi|297331814|gb|EFH62233.1| hypothetical protein ARALYDRAFT_480424 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 315/624 (50%), Positives = 388/624 (62%), Gaps = 77/624 (12%)
Query: 1 MASLMAIRCLRSRRHSSLTKVRFTSLQYSYLNHPQNNIIGKTLTLSLAKTLSTSAVEYNT 60
M+SLMAIRC R+++ ++ + + L+ ++ + TL K LSTSA +
Sbjct: 1 MSSLMAIRCARTQKIVTIGSLLHLRSSFPRLSSQFHSSV--TLNSIPIKNLSTSAATNDY 58
Query: 61 PPPQPPQSPLSDSRAFPDQSNFNNNQWASQQEQNNHLSYPNQGHGYATNQYSSDRNYPNR 120
SP R +P QS F++ + +Q+ N PN+
Sbjct: 59 YQNPQSGSPSQQQRPYPPQS-FDSQSYQNQRVPQN----------------------PNQ 95
Query: 121 GYPNQGQRLPIQGQAYPQQHQPGNHQYQNPSNNQEYQRSNYQGQRSPNQGQVYPHQQQPH 180
P G + P G H+P QY QR Y GQR
Sbjct: 96 WTPQHGGQNPQHGG-----HRP---QYGG-------QRPQYGGQRP-------------- 126
Query: 181 SNQYQNPGNQNFQQPRSPNQWNNQQNQGYPQARNSYQQVS-PGHQIPNQLNNVPNNMNQC 239
QY GN Q + Q+Q Y + QQ +QI NQ+N
Sbjct: 127 --QYGGAGNNYQNQNVQ----QSHQSQYYTPQQQQQQQPPRSSNQISNQMN--------- 171
Query: 240 PAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKV 299
+V PPSV ++ LCQ K+AIEL+DKG D CF LFE C N K E++KKV
Sbjct: 172 ----EVAPPSVEEVMSLCQRRLYKDAIELLDKGAMPDRECFVLLFESCANLKSLEHSKKV 227
Query: 300 HDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLG 359
HD+FLQS RGD LNN VI M+G+C S+TDA+RVFDHM D+ MDSWHLM+ Y+DNG+G
Sbjct: 228 HDHFLQSKFRGDPKLNNMVISMFGECRSVTDAKRVFDHMVDKDMDSWHLMMRAYSDNGMG 287
Query: 360 DEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLG 419
D+ L LFE+M K GL+PNE+TFL VF AC + I+EAF+HF+SM++E GISP TEHYLG
Sbjct: 288 DDALHLFEEMTKQGLKPNEETFLTVFLACATVGGIKEAFLHFDSMRNEHGISPKTEHYLG 347
Query: 420 LVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479
++GVLGKCGHL EA+Q+I + LPFEPTA+FWEA+RNYAR+HGDIDLED+ EELMVDLD S
Sbjct: 348 VLGVLGKCGHLIEAEQYI-RDLPFEPTADFWEAMRNYARLHGDIDLEDYMEELMVDLDSS 406
Query: 480 KADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYV 539
KA KIPTP PK +++ KSR++EFRN T Y+D+ K A K YVPDTR+V
Sbjct: 407 KAVTNKIPTPQPKSFKETNMVTSKSRILEFRNLTFYKDEAKEMAAK--KGVVYVPDTRFV 464
Query: 540 LHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGR 599
LHDIDQEAKEQALLYHSERLAIAYG+I TP R L IIKNLRVCGDCHN IKIMS+I+GR
Sbjct: 465 LHDIDQEAKEQALLYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGR 524
Query: 600 ELIVRDNKRFHHFKDGKCSCGDYW 623
ELIVRDNKRFHHFKDGKCSCGDYW
Sbjct: 525 ELIVRDNKRFHHFKDGKCSCGDYW 548
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 623 | ||||||
| TAIR|locus:2053659 | 579 | AT2G15690 "AT2G15690" [Arabido | 0.833 | 0.896 | 0.537 | 1.1e-142 | |
| TAIR|locus:2127826 | 537 | MEF8S "MEF8 similar" [Arabidop | 0.805 | 0.934 | 0.340 | 8.1e-76 | |
| TAIR|locus:2040135 | 615 | MEF8 "AT2G25580" [Arabidopsis | 0.556 | 0.564 | 0.395 | 3.7e-72 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.157 | 0.125 | 0.632 | 1.1e-62 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.349 | 0.256 | 0.345 | 5.6e-61 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.345 | 0.346 | 0.363 | 7.7e-61 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.163 | 0.129 | 0.666 | 9.5e-61 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.377 | 0.296 | 0.337 | 2.7e-60 | |
| TAIR|locus:2040859 | 469 | AT2G34370 [Arabidopsis thalian | 0.582 | 0.773 | 0.358 | 4.8e-60 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.337 | 0.211 | 0.345 | 2.1e-59 |
| TAIR|locus:2053659 AT2G15690 "AT2G15690" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1395 (496.1 bits), Expect = 1.1e-142, P = 1.1e-142
Identities = 291/541 (53%), Positives = 347/541 (64%)
Query: 96 HLSYPNQGHGYATNQYSSDRNYPNRGYP----------NQGQRLPIQGQAYPQQHQPGNH 145
HLS + Y N S + R YP N QR+P + QH
Sbjct: 48 HLSTSAAANDYHQNPQSGSPSQHQRPYPPQSFDSQNQTNTNQRVPQSPNQWSTQHGGQIP 107
Query: 146 QY--QNPSNNQEYQRSNYQGQRSPNQGQVYPHQQQPHSNQYQNPGNQ-NFQQPRSPNQWN 202
QY QNP + QR Y GQ GQ+ Q H+ Q+ Q Q+P+ N
Sbjct: 108 QYGGQNPQHGG--QRPPYGGQNPQQGGQM--SQYGGHNPQHGGHRPQYGGQRPQYGGPGN 163
Query: 203 NQQNQGYPQARNSYQQVSPGHXXXXXXXXXXXXXXXXXAGDQVLPPSVADLARLCQEGKV 262
N QNQ Q+ S Q +P + PPSV ++ RLCQ
Sbjct: 164 NYQNQNVQQSNQS-QYYTP-QQQQQPQPPRSSNQSPNQMNEVAPPPSVEEVMRLCQRRLY 221
Query: 263 KEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMY 322
K+AIEL+DKG D CF LFE C N K E++KKVHD+FLQS RGD LNN VI M+
Sbjct: 222 KDAIELLDKGAMPDRECFVLLFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMF 281
Query: 323 GKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFL 382
G+C S+TDA+RVFDHM D+ MDSWHLM+ Y+DNG+GD+ L LFE+M K GL+PNE+TFL
Sbjct: 282 GECSSITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFL 341
Query: 383 AVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442
VF AC + IEEAF+HF+SMK+E GISP TEHYLG++GVLGKCGHL EA+Q+I LP
Sbjct: 342 TVFLACATVGGIEEAFLHFDSMKNEHGISPKTEHYLGVLGVLGKCGHLVEAEQYIRD-LP 400
Query: 443 FEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSXXXXXXXXXXXXXXRTAISILDG 502
FEPTA+FWEA+RNYAR+HGDIDLED+ EELMVD+DPS +++
Sbjct: 401 FEPTADFWEAMRNYARLHGDIDLEDYMEELMVDVDPSKAVINKIPTPPPKSFKETNMVTS 460
Query: 503 KSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIA 562
KSR++EFRN T Y+D+ K A K YVPDTR+VLHDIDQEAKEQALLYHSERLAIA
Sbjct: 461 KSRILEFRNLTFYKDEAKEMAAK--KGVVYVPDTRFVLHDIDQEAKEQALLYHSERLAIA 518
Query: 563 YGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDY 622
YG+I TP R L IIKNLRVCGDCHN IKIMS+I+GR LIVRDNKRFHHFKDGKCSCGDY
Sbjct: 519 YGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRDNKRFHHFKDGKCSCGDY 578
Query: 623 W 623
W
Sbjct: 579 W 579
|
|
| TAIR|locus:2127826 MEF8S "MEF8 similar" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 181/532 (34%), Positives = 280/532 (52%)
Query: 110 QYSSDRNYPNRGYPNQGQRLPIQGQAYPQQHQPGNHQYQNPSNNQEYQRSNYQGQRSPNQ 169
+YSS +Y + G P G P + + Y N N E +Q Q S Q
Sbjct: 18 RYSSLFSYLSTAALRLGFENPTNGN--PMDNSSHHIGYVNGFNGGEQSLGGFQ-QNSYEQ 74
Query: 170 GQVYPHQQQPHSNQYQNPGNQNFQQPRSPNQWNNQQNQGYPQARNSYQQVSPGHXXXXXX 229
Q P + YQN N+N Q ++ NQ+NQ + + + G+
Sbjct: 75 SLNPVSGQNPTNRFYQNGYNRN-QSYGEHSEIINQRNQNWQSSDGCSSYGTTGNGVPQEN 133
Query: 230 XXXXXXXXXXXAGDQVLPPSVADLARLCQEGKVKEAIELM----DKGVKADASCFYTLFE 285
+G S+ +L +C+EGKVK+A+E++ ++G D + + +
Sbjct: 134 NTGGNHFQQDHSGHS----SLDELDSICREGKVKKAVEIIKSWRNEGYVVDLPRLFWIAQ 189
Query: 286 LCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDS 345
LCG+ + + AK VH++ S D+ N +IEMY CGS+ DA VF+ M +R++++
Sbjct: 190 LCGDAQALQEAKVVHEFITSSVGISDISAYNSIIEMYSGCGSVEDALTVFNSMPERNLET 249
Query: 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405
W +I +A NG G++ + F + ++ G +P+ + F +F ACG + E +HFESM
Sbjct: 250 WCGVIRCFAKNGQGEDAIDTFSRFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLHFESMY 309
Query: 406 SEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDL 465
E+GI P EHY+ LV +L + G+L EA +F+E EP + WE L N +R+HGD+ L
Sbjct: 310 KEYGIIPCMEHYVSLVKMLAEPGYLDEALRFVES---MEPNVDLWETLMNLSRVHGDLIL 366
Query: 466 EDHAEELMVDLDPSXXXXXXXXXXXXXXRTAISILDGKSRLVEFRNPTL-Y-------RD 517
D ++++ LD S + + + + R+ + N + Y R
Sbjct: 367 GDRCQDMVEQLDASRLNKESKAGLVPVKSSDL-VKEKLQRMAKGPNYGIRYMAAGDISRP 425
Query: 518 DEK-----LKALNQ-MKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPAR 571
+ + LK+L + M E YVP ++ LHD+DQE+K++ L H+ER A + TPAR
Sbjct: 426 ENRELYMALKSLKEHMIEIGYVPLSKLALHDVDQESKDENLFNHNERFAFISTFLDTPAR 485
Query: 572 TPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
+ +R++KNLRVC DCHNA+K+MS+IVGRELI RD KRFHH KDG CSC +YW
Sbjct: 486 SLIRVMKNLRVCADCHNALKLMSKIVGRELISRDAKRFHHMKDGVCSCREYW 537
|
|
| TAIR|locus:2040135 MEF8 "AT2G25580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 698 (250.8 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
Identities = 144/364 (39%), Positives = 213/364 (58%)
Query: 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVF 335
D S L ++CG + + AK VH S DL N+ ++EMY CG +A VF
Sbjct: 253 DLSRLLRLAKICGEAEGLQEAKTVHGKISASVSHLDLSSNHVLLEMYSNCGLANEAASVF 312
Query: 336 DHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIE 395
+ M+++++++W ++I +A NG G++ + +F + ++ G P+ Q F +F ACG ++
Sbjct: 313 EKMSEKNLETWCIIIRCFAKNGFGEDAIDMFSRFKEEGNIPDGQLFRGIFYACGMLGDVD 372
Query: 396 EAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRN 455
E +HFESM ++GI+P E Y+ LV + G L EA +F+E ++P EP + WE L N
Sbjct: 373 EGLLHFESMSRDYGIAPSIEDYVSLVEMYALPGFLDEALEFVE-RMPMEPNVDVWETLMN 431
Query: 456 YARIHGDIDLEDHAEELMVDLDPSXXXXXXXXXXXXXXRTAIS---------ILDG-KSR 505
+R+HG+++L D+ E++ LDP+ + + IL G KS
Sbjct: 432 LSRVHGNLELGDYCAEVVEFLDPTRLNKQSREGFIPVKASDVEKESLKKRSGILHGVKSS 491
Query: 506 LVEFR--NPTLYRDDEKLKALNQMK----ESTYVPDTRYVLHDIDQEAKEQALLYHSERL 559
+ EFR + L +DE + L +K E YV +TR LHDIDQE+KE LL HSER+
Sbjct: 492 MQEFRAGDTNLPENDELFQLLRNLKMHMVEVGYVAETRMALHDIDQESKETLLLGHSERI 551
Query: 560 AIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSC 619
A A ++++ R P +IKNLRVC DCHNA+KIMS IVGRE+I RD KRFH K+G C+C
Sbjct: 552 AFARAVLNSAPRKPFTVIKNLRVCVDCHNALKIMSDIVGREVITRDIKRFHQMKNGACTC 611
Query: 620 GDYW 623
DYW
Sbjct: 612 KDYW 615
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 62/98 (63%), Positives = 79/98 (80%)
Query: 526 QMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGD 585
+MK++ YV T VLHD+++E KE+ + YHSERLA+AYG++ + P+R+IKNLRVC D
Sbjct: 684 RMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCED 743
Query: 586 CHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
CHNAIK M+RI GR +I+RDN RFHHFKDG CSCGDYW
Sbjct: 744 CHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 5.6e-61, Sum P(2) = 5.6e-61
Identities = 78/226 (34%), Positives = 128/226 (56%)
Query: 258 QEGKVKEAIELMDKGVKADASCFYTLFEL------CGNPKWYENAKKVHDYFLQSTIRG- 310
Q G +A+EL+ + + D F + C + K++H Y L++
Sbjct: 452 QHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAV 511
Query: 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMR 370
L ++N +I+MY KCGS++DAR VFD+M ++ +W ++ GY +G G+E L +F++MR
Sbjct: 512 PLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMR 571
Query: 371 KLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHL 430
++G + + T L V AC + I++ +F MK+ FG+SPG EHY LV +LG+ G L
Sbjct: 572 RIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRL 631
Query: 431 FEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDL 476
A + IE+ +P EP W A + RIHG ++L ++A E + +L
Sbjct: 632 NAALRLIEE-MPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITEL 676
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 7.7e-61, Sum P(2) = 7.7e-61
Identities = 80/220 (36%), Positives = 126/220 (57%)
Query: 263 KEAI----ELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKV 318
KEA+ E+ + V+ D C E K +H Y ++ IR D VL +
Sbjct: 229 KEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVL 288
Query: 319 IEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE 378
I+MY KCG M +A VF ++ +S+ +W +I+GYA +G G E + F +M+K+G++PN
Sbjct: 289 IDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNV 348
Query: 379 QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIE 438
TF AV +AC +EE + F SM+ ++ + P EHY +V +LG+ G L EA++FI
Sbjct: 349 ITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFI- 407
Query: 439 QKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDP 478
Q++P +P A W AL RIH +I+L + E+++ +DP
Sbjct: 408 QEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDP 447
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 9.5e-61, Sum P(2) = 9.5e-61
Identities = 68/102 (66%), Positives = 84/102 (82%)
Query: 522 KALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLR 581
K +++K+ YVPDT VLHD+++E KEQ L +HSE+LAIA+GLISTP +T LRI+KNLR
Sbjct: 685 KIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLR 744
Query: 582 VCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
VC DCH AIK +S++VGRE+IVRD RFHHFKDG CSC DYW
Sbjct: 745 VCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 356 (130.4 bits), Expect = 2.7e-60, Sum P(2) = 2.7e-60
Identities = 81/240 (33%), Positives = 120/240 (50%)
Query: 243 DQVLPPSVADLARLCQEGKVKEAIELMDKGVKADAS----CFYTLFELCGNPKWYENAKK 298
++ LP A ++ Q G ++AI L + K++ S + C K
Sbjct: 382 EKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKW 441
Query: 299 VHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGL 358
VHD + + ++ +I MY KCGS+ +ARR+FD M ++ +W+ MI+GY +G
Sbjct: 442 VHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQ 501
Query: 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYL 418
G E L +F +M G+ P TFL V AC A ++E F SM +G P +HY
Sbjct: 502 GQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYA 561
Query: 419 GLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDP 478
+V +LG+ GHL A QFIE + EP + WE L RIH D +L E + +LDP
Sbjct: 562 CMVDILGRAGHLQRALQFIEA-MSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDP 620
|
|
| TAIR|locus:2040859 AT2G34370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 139/388 (35%), Positives = 207/388 (53%)
Query: 256 LCQEGKVKEAIELMD----KGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD 311
LC++ K++EA+E++D KG D L +LCG + E A+ VHD R
Sbjct: 87 LCKQVKIREALEVIDILEDKGYIVDFPRLLGLAKLCGEVEALEEARVVHDCITPLDARS- 145
Query: 312 LVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRK 371
+ VIEMY C S DA VF+ M R+ ++W MI A NG G+ + +F + +
Sbjct: 146 ---YHTVIEMYSGCRSTDDALNVFNEMPKRNSETWGTMIRCLAKNGEGERAIDMFTRFIE 202
Query: 372 LGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLF 431
G +P+++ F AVF AC S I E +HFESM ++G+ E Y+ ++ +L CGHL
Sbjct: 203 EGNKPDKEIFKAVFFACVSIGDINEGLLHFESMYRDYGMVLSMEDYVNVIEMLAACGHLD 262
Query: 432 EAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSXXXXXXXXX--X 489
EA F+E ++ EP+ E WE L N + G ++L D EL+ LD S
Sbjct: 263 EALDFVE-RMTVEPSVEMWETLMNLCWVQGYLELGDRFAELIKKLDASRMSKESNAGLVA 321
Query: 490 XXXXRTAISIL-----------DGKSRLVEFR-NPTLYRDD-EKLKALN-QMKESTYVPD 535
+A+ L D K R+ EFR T + ++L QM + +VP
Sbjct: 322 AKASDSAMEKLKELRYCQMIRDDPKKRMHEFRAGDTSHLGTVSAFRSLKVQMLDIGFVPA 381
Query: 536 TRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSR 595
TR +++E KE+ LL+ S +LA A+ +I++ AR PL +++N+R C D HN K++S
Sbjct: 382 TRVCFVTVEEEEKEEQLLFRSNKLAFAHAIINSEARRPLTVLQNMRTCIDGHNTFKMISL 441
Query: 596 IVGRELIVRDNKRFHHFKDGKCSCGDYW 623
I GR LI RD K++H +K+G CSC DYW
Sbjct: 442 ITGRALIQRDKKKYHFYKNGVCSCKDYW 469
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 346 (126.9 bits), Expect = 2.1e-59, Sum P(2) = 2.1e-59
Identities = 74/214 (34%), Positives = 119/214 (55%)
Query: 268 LMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS 327
++ G + D+ + T+ + E +VH +++ + D+V+ + +++MY KCG
Sbjct: 610 MLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGR 669
Query: 328 MTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQ-TFLAVFS 386
+ A R F+ M R+ SW+ MI+GYA +G G+E L+LFE M+ G P + TF+ V S
Sbjct: 670 LDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLS 729
Query: 387 ACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT 446
AC A +EE F HFESM +G++P EH+ + VLG+ G L + + FIE K+P +P
Sbjct: 730 ACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIE-KMPMKPN 788
Query: 447 AEFWEA-LRNYARIHG-DIDLEDHAEELMVDLDP 478
W L R +G +L A E++ L+P
Sbjct: 789 VLIWRTVLGACCRANGRKAELGKKAAEMLFQLEP 822
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZQE5 | PP153_ARATH | No assigned EC number | 0.5182 | 0.9165 | 0.9861 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 623 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-85 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-65 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 1e-23 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-21 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-21 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-12 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 6e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-08 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-07 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 3e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-06 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 6e-05 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 8e-05 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 2e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-04 | |
| pfam14179 | 110 | pfam14179, YppG, YppG-like protein | 0.001 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.004 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.004 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 279 bits (716), Expect = 5e-85
Identities = 135/400 (33%), Positives = 212/400 (53%), Gaps = 42/400 (10%)
Query: 260 GKVKEAIELM----DKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLN 315
G +EA+ L D GV D F + + E+AK+ H +++ D+V N
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363
Query: 316 NKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ 375
++++Y K G M DAR VFD M +++ SW+ +I GY ++G G + +++FE+M G+
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423
Query: 376 PNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQ 435
PN TFLAV SAC + E+ + F+SM I P HY ++ +LG+ G L EA
Sbjct: 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483
Query: 436 FIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK--------------- 480
I ++ PF+PT W AL RIH +++L A E + + P K
Sbjct: 484 MI-RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG 542
Query: 481 --ADPKKIPTPPPKKRTAISILDGKSRLVEFRNPT---------------LYRDDEKLKA 523
A+ K+ KR +S+ + +E + +Y+ ++L
Sbjct: 543 RQAEAAKVVE--TLKRKGLSMHPACT-WIEVKKQDHSFFSGDRLHPQSREIYQKLDEL-- 597
Query: 524 LNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVC 583
+ ++ E YV + +L D+D++ ++ + YHSE+LAIA+GLI+T TPL+I ++ R+C
Sbjct: 598 MKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRIC 657
Query: 584 GDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623
DCH IK ++ + RE++VRD RFHHFK GKCSCGDYW
Sbjct: 658 KDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 229 bits (586), Expect = 2e-65
Identities = 118/354 (33%), Positives = 191/354 (53%), Gaps = 34/354 (9%)
Query: 297 KKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADN 356
K++H + L++ I D L N ++++Y +CG M A F+ ++ + SW++++ GY +
Sbjct: 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAH 567
Query: 357 GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEH 416
G G ++LF +M + G+ P+E TF+++ AC + + + +F SM+ ++ I+P +H
Sbjct: 568 GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627
Query: 417 YLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDL 476
Y +V +LG+ G L EA FI K+P P W AL N RIH ++L + A + + +L
Sbjct: 628 YACVVDLLGRAGKLTEAYNFI-NKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL 686
Query: 477 DPSK-----------ADPKKIPTPPPKKRTAIS---ILDGKSRLVEFRNPT--LYRDDE- 519
DP+ AD K ++T +D VE + DDE
Sbjct: 687 DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746
Query: 520 --KLKALN--------QMKES--TYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLIS 567
++K +N +MK S + D + +K+ HSERLAIA+GLI+
Sbjct: 747 HPQIKEINTVLEGFYEKMKASGLAGSESSSM---DEIEVSKDDIFCGHSERLAIAFGLIN 803
Query: 568 TPARTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGD 621
T P+ + KNL +C +CHN +K +S+IV RE+ VRD ++FHHFKDG+CSCGD
Sbjct: 804 TVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 1e-23
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 17/120 (14%)
Query: 501 DGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQE------AKEQALLY 554
+GK L + +++ + +K VP+T+ + HD+D E K + L
Sbjct: 7 EGKKTLSGDGSHPTSKEELFQR----IKVEGVVPETKEIGHDVDAEEFRDNGIKGKLLAS 62
Query: 555 HSERLAIAYGLISTPARTPLRIIKNL-RVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFK 613
H+E+ A+AYGL++T RIIK L R+CGDCH + +++ GRE+IVRD RFHHFK
Sbjct: 63 HAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREIIVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 1e-21
Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 6/137 (4%)
Query: 258 QEGKVKEAIELMDK----GVKADASCFYTLFELCGN-PKWYENAKKVHDYFLQSTIRGDL 312
+ G EA+ L + GV+ D F + CG P ++VH + ++ D+
Sbjct: 164 KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL-ARGREVHAHVVRFGFELDV 222
Query: 313 VLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372
+ N +I MY KCG + AR VFD M R SW+ MI+GY +NG EGL+LF MR+L
Sbjct: 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282
Query: 373 GLQPNEQTFLAVFSACG 389
+ P+ T +V SAC
Sbjct: 283 SVDPDLMTITSVISACE 299
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 4e-21
Identities = 58/235 (24%), Positives = 99/235 (42%), Gaps = 12/235 (5%)
Query: 210 PQARNSYQQVSPGHQIPNQLNNV-----PNNMNQCPAGDQVLPPSVADLARLCQEGKVKE 264
P N +Q S N ++ + S + L LC G++++
Sbjct: 10 PGKPNLFQLASHKAPNVLPYWNFHGRKRSRGLSVAASSSSSTHDSNSQLRALCSHGQLEQ 69
Query: 265 AIELMDK----GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIE 320
A++L++ V D + LF LC + E +V L S + L N ++
Sbjct: 70 ALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129
Query: 321 MYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQT 380
M+ + G + A VF M +R + SW++++ GYA G DE L L+ +M G++P+ T
Sbjct: 130 MFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYT 189
Query: 381 FLAVFSACGSA-DAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQ 434
F V CG D +H ++ FG + L+ + KCG + A+
Sbjct: 190 FPCVLRTCGGIPDLARGREVHAHVVR--FGFELDVDVVNALITMYVKCGDVVSAR 242
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 2e-18
Identities = 75/315 (23%), Positives = 124/315 (39%), Gaps = 31/315 (9%)
Query: 164 QRSPNQGQVYPHQQQPHSNQYQNPGNQNFQQPRSPN--QWNNQQNQGYPQARNSYQQVSP 221
+ Q + SN P + + S + P + S V
Sbjct: 4 PLARYQSIRLDEIRDSLSN----PRLLHSPRKFSLRGRRTKT------PFSSISCSSVEQ 53
Query: 222 GHQIPNQLNNVPNNMNQCPAGDQVLPPSV--ADLARLCQ-------EGKVKEAIELMD-- 270
G + +L P + + D L + LC G+ +EA+EL +
Sbjct: 54 GLKPRPRLKPEPIRIEVSESKDARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEIL 113
Query: 271 ---KGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS 327
AS + L E C K K V+ + S D + N+V+ M+ KCG
Sbjct: 114 EAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGM 173
Query: 328 MTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTF-LAVFS 386
+ DARR+FD M +R++ SW +I G D G E LF +M + G +TF + + +
Sbjct: 174 LIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233
Query: 387 ACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT 446
+ G A +H +K+ G+ T L+ + KCG + +A+ + +P + T
Sbjct: 234 SAGLGSARAGQQLHCCVLKT--GVVGDTFVSCALIDMYSKCGDIEDARCVFDG-MPEKTT 290
Query: 447 AEFWEALRNYARIHG 461
+ L YA +HG
Sbjct: 291 VAWNSMLAGYA-LHG 304
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 6e-16
Identities = 32/95 (33%), Positives = 53/95 (55%)
Query: 296 AKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYAD 355
+++H Y +++ D+ + N +I+MY GS +A +VF M + SW MI+GY
Sbjct: 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366
Query: 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS 390
NGL D+ L+ + M + + P+E T +V SAC
Sbjct: 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 7e-13
Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 297 KKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADN 356
+++H L++ + GD ++ +I+MY KCG + DAR VFD M +++ +W+ M+ GYA +
Sbjct: 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALH 303
Query: 357 GLGDEGLQLFEQMRKLGLQPNEQTF---LAVFSACGSADAIEEA 397
G +E L L+ +MR G+ ++ TF + +FS + ++A
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 4e-12
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 14/187 (7%)
Query: 261 KVKEAIELMD-KGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVI 319
K E LM+ V D ++ C + K+H+ + + +V+ N +I
Sbjct: 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431
Query: 320 EMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQ 379
EMY KC + A VF ++ ++ + SW +I G N E L F QM L L+PN
Sbjct: 432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSV 490
Query: 380 TFLAVFSACGSADAI---EEAFIHFESMKSEFGISPGTEHYL--GLVGVLGKCGHLFEA- 433
T +A SAC A+ +E IH +++ GI G + +L L+ + +CG + A
Sbjct: 491 TLIAALSACARIGALMCGKE--IHAHVLRT--GI--GFDGFLPNALLDLYVRCGRMNYAW 544
Query: 434 QQFIEQK 440
QF +
Sbjct: 545 NQFNSHE 551
|
Length = 857 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 6e-08
Identities = 40/136 (29%), Positives = 52/136 (38%), Gaps = 3/136 (2%)
Query: 116 NYPNRGYPNQGQRLPIQGQAYPQQHQPGNHQYQNPSNNQEYQRSNYQGQRSPNQGQVYPH 175
G NQGQ+ P+ Q PQ QPG Q+ + Q Q++P Q +
Sbjct: 173 AQGQAGGMNQGQQGPVGQQQPPQMGQPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQN 232
Query: 176 QQQPHSNQYQNP--GNQNFQQPRSPNQWNNQQNQGYPQARNSYQQVSPGHQI-PNQLNNV 232
QQQ +Q Q P Q + Q Q + QQ P Q +QL +
Sbjct: 233 QQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGML 292
Query: 233 PNNMNQCPAGDQVLPP 248
PN M Q P G Q P
Sbjct: 293 PNQMQQMPGGGQGGPG 308
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 6e-08
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSAC 388
+++ +I+GY G +E L+LF +M+K G++PN T+ +
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 45/220 (20%), Positives = 51/220 (23%), Gaps = 16/220 (7%)
Query: 61 PPPQPPQSPLSDSRAFPDQSNFNNNQWASQQEQNNHLSYPNQGHGYATNQYSSDRNYPNR 120
P PQ P + Q Q L A Q P
Sbjct: 144 PQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGY 203
Query: 121 GYPNQG--------QRLPIQGQAYPQQHQPGNHQYQNPSNNQEYQRSNYQGQRSPNQGQV 172
P QG Q LP QA Q P Q P Q Q P
Sbjct: 204 PQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPP 263
Query: 173 YPHQQQPHSNQYQNPGNQNFQQPRSPNQWNNQQNQGYPQARNSYQQVSPGHQIPNQLNNV 232
QQ P P NQ P P N Q G Q Q
Sbjct: 264 QQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQ 323
Query: 233 PNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG 272
++Q Q S + R K + I + K
Sbjct: 324 LVQLSQ----QQREALSQEEAKRA----KRRHKIVSLSKY 355
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 33/123 (26%), Positives = 44/123 (35%), Gaps = 13/123 (10%)
Query: 113 SDRNYPNRGYPNQGQRLPIQGQ-AYPQQHQPGNHQYQNPSNNQEYQRSNYQGQRS-PNQG 170
SD+ P +GQR P +Q G Q P Q N Q Q PNQG
Sbjct: 441 SDQQRPVSRGRGRGQRGPRSQPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQRQSQGPNQG 500
Query: 171 Q-------VYPHQQQPHSNQY-QNPGNQNFQQP-RSPNQWNNQQNQGYPQARNSYQQVSP 221
+ P QP +Y G + P R Q +QQ Q P+AR + +
Sbjct: 501 PRGQGGYNLRPRTYQPQ--RYGGGQGRRWNPNPYRQSGQGRSQQQQPQPEARGNQSRTPG 558
Query: 222 GHQ 224
+
Sbjct: 559 PGR 561
|
Length = 582 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-06
Identities = 10/30 (33%), Positives = 22/30 (73%)
Query: 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGL 374
+++ +I+GY G +E L+LF++M++ G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 8e-06
Identities = 10/34 (29%), Positives = 24/34 (70%)
Query: 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE 378
+++ +I+G G +E L+LF++M++ G++P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 34/226 (15%), Positives = 45/226 (19%), Gaps = 45/226 (19%)
Query: 49 KTLSTSAVEY-----NTPPPQPPQSPLSDSRAFPDQSNFNNNQWASQQEQNNHLSYPNQG 103
K + E+ PP Q P + P Q+
Sbjct: 38 KLSQSGVAEFPWDPSPQAPPPVAQLPQPLPQPPPTQA-------------------LQAL 78
Query: 104 HGYATNQYSSDRNYPNRGYPNQGQRLPIQGQAYPQQHQPGNHQYQNPSNNQEYQRSNYQG 163
Q+++ + G A P Y Q
Sbjct: 79 PAGDQQQHNT--PTGSPAANPPATFALPAGPAGPTIQTEPGQLYPV-------QVPVMVT 129
Query: 164 QRSPNQGQVYPHQQQPHSNQYQNPGNQNFQQPRSPNQWNNQQNQGYPQARNSYQQVSPGH 223
Q N P QQ Q Q Q + Q+N S
Sbjct: 130 QNPANSPLDQP-AQQRALQQLQQRYGAPASGQLPSQQQSAQKNDE-----------SQLQ 177
Query: 224 QIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELM 269
Q PN + L L Q K E M
Sbjct: 178 QQPNGETPPQQTDGAGDDESEALVRLREADGTLEQRIKGAEGGGAM 223
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 8e-05
Identities = 31/156 (19%), Positives = 38/156 (24%)
Query: 79 QSNFNNNQWASQQEQNNHLSYPNQGHGYATNQYSSDRNYPNRGYPNQGQRLPIQGQAYPQ 138
Q N Q Q QG A Q + P Q Q +Q Q
Sbjct: 219 QQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQ 278
Query: 139 QHQPGNHQYQNPSNNQEYQRSNYQGQRSPNQGQVYPHQQQPHSNQYQNPGNQNFQQPRSP 198
Q Q Q + Q+ GQ P Q P Q+ Q Q
Sbjct: 279 PPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQGGQAVQQGVMSAGQQ 338
Query: 199 NQWNNQQNQGYPQARNSYQQVSPGHQIPNQLNNVPN 234
+ Q + QQ G P N
Sbjct: 339 QLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMN 374
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 31/130 (23%), Positives = 40/130 (30%), Gaps = 9/130 (6%)
Query: 63 PQPPQSPLSDSRAFPDQSNFNNNQWASQQEQNNHLSYPNQGHGYATNQ-YSSDRNYPNRG 121
P P + R Q N ++Q N + NQ NQ Y R
Sbjct: 456 RGPRSQPQNQRR----QQNRGRQSSQPPRQQQNRSNQNNQRQSQGPNQGPRGQGGYNLRP 511
Query: 122 YPNQGQRLPIQGQAYPQQHQPGNHQYQNPSNNQEYQRSNYQGQRSPNQGQVYPHQQQPHS 181
Q QR GQ P Q S Q+ Q +G +S G Q
Sbjct: 512 RTYQPQRYG-GGQGRRWNPNPYRQSGQGRSQQQQPQPEA-RGNQSRTPGPG--RGQGGRG 567
Query: 182 NQYQNPGNQN 191
NQ +N + N
Sbjct: 568 NQNRNQRSGN 577
|
Length = 582 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 7/162 (4%)
Query: 268 LMDKGVKADASCFYTLFELCGNPKWYENAKKV-HDYFLQST-IRGDLVLNNKVIEMYGKC 325
+ K VK D F L CG + A V + ++ I D + +++
Sbjct: 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592
Query: 326 GSMTDARRVFDHMADR----SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTF 381
G + A+ V+ + + + + + + +N + G D L +++ M+K G++P+E F
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652
Query: 382 LAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGV 423
A+ G A +++AF + + + GI GT Y L+G
Sbjct: 653 SALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSSLMGA 693
|
Length = 1060 |
| >gnl|CDD|222579 pfam14179, YppG, YppG-like protein | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.001
Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 134 QAYPQQHQPGNHQYQNPSNNQEYQRSNYQGQRSPNQGQVYPHQQQPHSNQ-YQNP---GN 189
Y Q Q Q Q YQ+ Y Q P P QQQ H P +
Sbjct: 1 NPYQQNTNQYPPQNQQQ---QPYQQQPYHQQ-MPPPPYSPPQQQQGHFMPPQPQPYPKQS 56
Query: 190 QNFQQPRSPNQWNNQ 204
QQP + + +Q
Sbjct: 57 PQQQQPPQFSSFLSQ 71
|
The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.004
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 4/153 (2%)
Query: 259 EGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKV 318
+ VKEA S F L +C + + + A +V ++ ++ D L +
Sbjct: 419 QRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478
Query: 319 IEMYGKCGSMTDARRVFDHMADRSMD----SWHLMINGYADNGLGDEGLQLFEQMRKLGL 374
I K G + VF M + ++ ++ +I+G A G + + MR +
Sbjct: 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538
Query: 375 QPNEQTFLAVFSACGSADAIEEAFIHFESMKSE 407
+P+ F A+ SACG + A++ AF MK+E
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAE 571
|
Length = 1060 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.004
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 343 MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP 376
+++++ ++ A G D L + E+M+ GL+P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.004
Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 8/144 (5%)
Query: 86 QWASQQEQNNHLSYPNQGHGYATNQYSSDRNYPNRGYPNQGQRLP-----IQGQAYPQQH 140
Q+A Q+Q P + ++ + + P + + G P ++ PQQ
Sbjct: 702 QFAQTQQQRYSGEQPAGANPFSLDDFEFS---PMKALLDDGPHEPLFTPIVEPVQQPQQP 758
Query: 141 QPGNHQYQNPSNNQEYQRSNYQGQRSPNQGQVYPHQQQPHSNQYQNPGNQNFQQPRSPNQ 200
QYQ P Q Q Q+ Y QQP + Q Q Q P+ Q
Sbjct: 759 VAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQ 818
Query: 201 WNNQQNQGYPQARNSYQQVSPGHQ 224
Q PQ + Q V+P Q
Sbjct: 819 QPQQPVAPQPQYQQPQQPVAPQPQ 842
|
Length = 1355 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 623 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.81 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.8 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.8 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.7 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.66 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.64 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.64 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.6 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.53 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.5 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.46 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.45 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.41 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.4 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.38 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.36 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.32 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.32 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.26 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.25 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.23 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.22 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.22 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.21 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.18 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.18 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.17 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.14 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.13 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.12 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.12 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.11 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.09 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.05 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.02 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.98 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.97 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.95 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.92 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.89 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.89 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.88 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 98.85 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.84 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 98.84 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.81 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 98.76 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.75 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.73 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.71 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.69 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.67 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.63 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.61 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.59 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.58 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.53 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.51 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.49 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.46 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.46 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.44 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.44 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.42 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.42 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.42 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.41 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.41 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.4 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.38 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.38 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.34 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.33 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.33 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.29 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.27 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.27 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.21 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.2 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.2 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.2 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.2 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.18 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.12 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.07 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.07 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.06 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.05 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.03 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.03 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.02 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.02 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.0 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.0 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.98 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 97.97 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.96 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.93 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.92 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.89 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.84 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.84 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.81 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.78 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.78 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.76 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 97.75 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.75 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.75 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.74 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.69 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.68 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.67 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.67 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.64 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 97.62 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 97.61 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.6 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.58 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.57 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.54 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.54 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.52 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.51 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.49 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.48 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.47 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.44 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.43 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 97.39 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.37 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.37 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.36 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.35 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.32 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.32 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.32 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.31 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.31 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.26 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.25 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.24 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.23 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.23 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.21 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.18 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.18 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.18 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.17 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.17 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.17 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.16 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.13 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.12 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.12 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.11 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.1 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.04 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.03 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.99 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.98 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.94 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 96.92 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.9 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.84 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.83 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.81 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.77 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.76 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.68 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.68 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.63 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.61 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.58 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.42 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.41 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.39 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.39 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.36 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.33 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.27 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.24 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.22 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.21 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.2 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.2 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.18 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.13 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.09 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.06 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.95 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 95.93 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 95.93 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.93 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.93 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.9 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.84 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.71 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.7 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.68 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.65 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.65 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.63 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.63 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.63 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.45 | |
| KOG2199 | 462 | consensus Signal transducing adaptor protein STAM/ | 95.38 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.34 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.07 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.07 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.98 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.98 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.85 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.75 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.68 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.65 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.63 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.43 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.37 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.34 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 94.29 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.26 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.98 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 93.88 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.88 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.86 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.8 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 93.77 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.73 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.73 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.67 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.39 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.35 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.23 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.1 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.08 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.01 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.78 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.72 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.7 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.69 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.54 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.21 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.16 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 92.01 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.9 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 91.88 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 91.72 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 91.7 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 91.62 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.23 | |
| PF13388 | 422 | DUF4106: Protein of unknown function (DUF4106) | 91.14 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.14 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.09 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 90.95 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.88 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 90.87 | |
| PRK10263 | 1355 | DNA translocase FtsK; Provisional | 90.32 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.26 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.74 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.62 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 89.4 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 89.27 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 89.0 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 88.95 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.74 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.72 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 88.52 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 88.19 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.14 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 88.01 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.91 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.76 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.63 | |
| KOG2236 | 483 | consensus Uncharacterized conserved protein [Funct | 87.48 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 87.45 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.41 | |
| KOG4368 | 757 | consensus Predicted RNA binding protein, contains | 86.78 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.22 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 86.08 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 86.04 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 85.28 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.16 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 84.52 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 84.27 | |
| PF14669 | 233 | Asp_Glu_race_2: Putative aspartate racemase | 83.8 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.53 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.38 | |
| PF13388 | 422 | DUF4106: Protein of unknown function (DUF4106) | 82.8 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 82.41 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 82.36 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.28 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 82.19 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 82.08 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 81.96 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 81.57 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.31 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 80.83 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.75 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 80.72 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 80.71 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 80.68 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 80.18 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 80.1 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-65 Score=588.50 Aligned_cols=419 Identities=32% Similarity=0.559 Sum_probs=363.9
Q ss_pred CCCCCCcc--ccccc-----cCCChHHHHHHHHHhcCCCCCCCccCCccc------------------------------
Q 044791 192 FQQPRSPN--QWNNQ-----QNQGYPQARNSYQQVSPGHQIPNQLNNVPN------------------------------ 234 (623)
Q Consensus 192 ~~~~~~p~--~w~~~-----~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~------------------------------ 234 (623)
|+....|+ .|+.+ +.|++++|+++|++|...+..|+...+...
T Consensus 181 f~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~ 260 (697)
T PLN03081 181 FDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260 (697)
T ss_pred HhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccce
Confidence 55544455 88877 899999999999999777776654322110
Q ss_pred -----cccCCCCC-------------CCCchHHHHHHHHHHHcCCHHHHHHHHH----cCCCCCHHHHHHHHHHHhCCCC
Q 044791 235 -----NMNQCPAG-------------DQVLPPSVADLARLCQEGKVKEAIELMD----KGVKADASCFYTLFELCGNPKW 292 (623)
Q Consensus 235 -----~~~~~~~~-------------~~~~~~~~~li~~~~~~g~~~~A~~l~~----~~~~pd~~ty~~Ll~~~~~~g~ 292 (623)
+..+|+.+ ..+..+|++||.+|++.|++++|+++|+ .|+.||..||+++|.+|++.|+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 11111111 1256688889999999999999998884 4899999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 293 YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 293 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
+++|.+++.+|++.|+.+|..+|++||++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|++.
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHH
Q 044791 373 GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEA 452 (623)
Q Consensus 373 g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~ 452 (623)
|+.||.+||+++|.+|++.|++++|.++|+.|.+++|+.|+..+|++||++|++.|++++|.++|++ |++.|+..+|++
T Consensus 421 g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~-~~~~p~~~~~~~ 499 (697)
T PLN03081 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR-APFKPTVNMWAA 499 (697)
T ss_pred CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH-CCCCCCHHHHHH
Confidence 9999999999999999999999999999999998889999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccC---------------------
Q 044791 453 LRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRN--------------------- 511 (623)
Q Consensus 453 Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~--------------------- 511 (623)
|+.+|+.+|+++.|+.+++.+.++.+.+. .+|..|+..|++.|++..
T Consensus 500 Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~------------~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 500 LLTACRIHKNLELGRLAAEKLYGMGPEKL------------NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567 (697)
T ss_pred HHHHHHHcCCcHHHHHHHHHHhCCCCCCC------------cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeE
Confidence 99999999999999999999988876644 488999999999988730
Q ss_pred ------------Cc-----ccch-HHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCCCCh
Q 044791 512 ------------PT-----LYRD-DEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTP 573 (623)
Q Consensus 512 ------------~~-----~~~~-~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~~~ 573 (623)
++ .-+| +...+++.+|++.|+.||.......++...|+..+..|+++++.|++++...++.+
T Consensus 568 i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~ 647 (697)
T PLN03081 568 IEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTP 647 (697)
T ss_pred EEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCe
Confidence 00 0001 12223335566666677777666777777788888999999999999999999999
Q ss_pred hHHHhhHhhhcchhHHHHHHHHHhCCceeeecCCcccccccccccCCCCC
Q 044791 574 LRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623 (623)
Q Consensus 574 ~~i~~~l~~~g~~~~a~~l~~~~~~~~~~~rd~~~~~~~~~~~~~~~~~~ 623 (623)
++|+|||++|||||+|.|+++++.+|+|++||++|||||++|+|||||||
T Consensus 648 i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 648 LQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred EEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-58 Score=542.08 Aligned_cols=409 Identities=29% Similarity=0.522 Sum_probs=336.5
Q ss_pred ccccccc-----cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCC-----------------CCCCchHHHHHHHH
Q 044791 198 PNQWNNQ-----QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPA-----------------GDQVLPPSVADLAR 255 (623)
Q Consensus 198 p~~w~~~-----~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~-----------------~~~~~~~~~~li~~ 255 (623)
...|+.+ +.|++++|+++|++|...+..|+...+...+...|.. ..++..++++||.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3388877 9999999999999998888888876654333322222 12345566667777
Q ss_pred HHHcCCHHHHHHHHHcC----------------------------------CCCCHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044791 256 LCQEGKVKEAIELMDKG----------------------------------VKADASCFYTLFELCGNPKWYENAKKVHD 301 (623)
Q Consensus 256 ~~~~g~~~~A~~l~~~~----------------------------------~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~ 301 (623)
|++.|++++|+++|++. +.||..||+++|.+|++.|+++.+.+++.
T Consensus 434 y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred HHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 77777777777666543 45555555555555555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 044791 302 YFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTF 381 (623)
Q Consensus 302 ~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty 381 (623)
.|++.|+.+|..++|+||++|+++|++++|.++|++| .+|+++||+||.+|++.|+.++|+++|++|++.|+.||.+||
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Confidence 5666666666677778889999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 044791 382 LAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHG 461 (623)
Q Consensus 382 ~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g 461 (623)
+++|.+|++.|++++|+++|+.|.+++|+.|+..+|++|+++|++.|++++|++++++ |+++||..+|++|+.+|..+|
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~-m~~~pd~~~~~aLl~ac~~~~ 671 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK-MPITPDPAVWGALLNACRIHR 671 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999997779999999999999999999999999999999 999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCcccccc-------------------------------
Q 044791 462 DIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFR------------------------------- 510 (623)
Q Consensus 462 ~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~------------------------------- 510 (623)
+.+.++.+.+.+.++++++.. .|..+...|+..|++.
T Consensus 672 ~~e~~e~~a~~l~~l~p~~~~------------~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~ 739 (857)
T PLN03077 672 HVELGELAAQHIFELDPNSVG------------YYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHA 739 (857)
T ss_pred ChHHHHHHHHHHHhhCCCCcc------------hHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEE
Confidence 999999999999999887654 4555555566555543
Q ss_pred --CCc-----ccchHHHHH-HHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCCCChhHHHhhHhh
Q 044791 511 --NPT-----LYRDDEKLK-ALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRV 582 (623)
Q Consensus 511 --~~~-----~~~~~eal~-~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~~~~~i~~~l~~ 582 (623)
+++ ..+|.+.++ +..+|++.|+.||..... .++...|+..+..|++||+.|++++...++.+++|+|||++
T Consensus 740 f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~ 818 (857)
T PLN03077 740 FLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYM 818 (857)
T ss_pred EecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEe
Confidence 111 112223333 336777777777776544 34567788889999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHhCCceeeecCCcccccccccccCCC
Q 044791 583 CGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGD 621 (623)
Q Consensus 583 ~g~~~~a~~l~~~~~~~~~~~rd~~~~~~~~~~~~~~~~ 621 (623)
|||||+|.|+++++.+|+|++||++|||||++|+|||||
T Consensus 819 c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 819 CENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-49 Score=454.10 Aligned_cols=369 Identities=19% Similarity=0.216 Sum_probs=316.1
Q ss_pred ccccc-----cCCChHHHHHHHHHhcCCC-CCCCccCCccccccCC-----------------CCCCCCchHHHHHHHHH
Q 044791 200 QWNNQ-----QNQGYPQARNSYQQVSPGH-QIPNQLNNVPNNMNQC-----------------PAGDQVLPPSVADLARL 256 (623)
Q Consensus 200 ~w~~~-----~~g~~~~A~~lf~~m~~~~-~~p~~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~~ 256 (623)
.|+.. +.|++++|+++|+.|...+ ..|+...+...+...+ .+..++..+++.||.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 67765 8899999999999996533 3444333211111111 12345678889999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC--------------------------
Q 044791 257 CQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRG-------------------------- 310 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p-------------------------- 310 (623)
++.|++++|+++|++...||.++||+||.+|++.|++++|+++|++|++.|+.|
T Consensus 169 ~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 999999999999999888999999999999999999999999999997766555
Q ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 044791 311 ---------DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTF 381 (623)
Q Consensus 311 ---------d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty 381 (623)
|..+||+||++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 45566888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 044791 382 LAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHG 461 (623)
Q Consensus 382 ~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g 461 (623)
+++|.+|++.|++++|.++++.|.+. |+.+|..+|++||++|+++|++++|.++|++ |. +||+++||+||.+|+++|
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~-m~-~~d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDR-MP-RKNLISWNALIAGYGNHG 405 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHh-CC-CCCeeeHHHHHHHHHHcC
Confidence 99999999999999999999999977 9999999999999999999999999999999 86 689999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHH-CCcccCcceee
Q 044791 462 DIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKE-STYVPDTRYVL 540 (623)
Q Consensus 462 ~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~-~Gi~Pd~~t~~ 540 (623)
+.++|.++++.|.+. ++. ||..||+++|.+|++.|.+ ++|+++|++|.+ .|+.|+..+|.
T Consensus 406 ~~~~A~~lf~~M~~~---g~~--------Pd~~T~~~ll~a~~~~g~~--------~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 406 RGTKAVEMFERMIAE---GVA--------PNHVTFLAVLSACRYSGLS--------EQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred CHHHHHHHHHHHHHh---CCC--------CCHHHHHHHHHHHhcCCcH--------HHHHHHHHHHHHhcCCCCCccchH
Confidence 999888888887764 444 9999999999999999988 799999999975 69999999999
Q ss_pred eccCHHHHHHHHHHHHhHHHHHHhcccCCCCChhH-----HHhhHhhhcchhHHHHHHHHHh
Q 044791 541 HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLR-----IIKNLRVCGDCHNAIKIMSRIV 597 (623)
Q Consensus 541 ~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~~~~~-----i~~~l~~~g~~~~a~~l~~~~~ 597 (623)
.+|+ ++++.|++++|++++++|+..+.. ++.+++..|+.+.|.+++.++.
T Consensus 467 ~li~-------~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 467 CMIE-------LLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred hHHH-------HHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 9996 999999999999999998755432 3344455555555555555543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=446.97 Aligned_cols=368 Identities=14% Similarity=0.196 Sum_probs=322.3
Q ss_pred cCCChHHHHHHHHHhcCCCCCC-CccC---------------CccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIP-NQLN---------------NVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIEL 268 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p-~~~~---------------~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 268 (623)
+.|++++|+++|++|.+.+.++ +... ....++..+. .++..+|+.||.+|++.|++++|+++
T Consensus 382 r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~--~pd~~Tyn~LL~a~~k~g~~e~A~~l 459 (1060)
T PLN03218 382 RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR--NPTLSTFNMLMSVCASSQDIDGALRV 459 (1060)
T ss_pred HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 7899999999999997765543 1111 1111111122 26788999999999999999999999
Q ss_pred HH----cCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----
Q 044791 269 MD----KGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---- 340 (623)
Q Consensus 269 ~~----~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---- 340 (623)
|+ .|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|+++|++|.+
T Consensus 460 f~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 85 4899999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchh
Q 044791 341 RSMDSWHLMINGYADNGLGDEGLQLFEQMRK--LGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYL 418 (623)
Q Consensus 341 ~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~--~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~ 418 (623)
+|.++||+||.+|++.|++++|+++|++|++ .|+.||.+||++||.+|++.|++++|+++|++|.+. |+.|+..+|+
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~-gi~p~~~tyn 618 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY-NIKGTPEVYT 618 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCChHHHH
Confidence 6888999999999999999999999999986 679999999999999999999999999999999976 9999999999
Q ss_pred hHHHHHHhcCCHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhh
Q 044791 419 GLVGVLGKCGHLFEAQQFIEQKL---PFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRT 495 (623)
Q Consensus 419 ~Li~~~~k~g~~e~A~~lf~~~m---~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t 495 (623)
+||.+|++.|++++|+++|++ | ++.||..+|++||.+|++.|++++|.++++.|.+. +.. |+..+
T Consensus 619 sLI~ay~k~G~~deAl~lf~e-M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~---G~~--------pd~~t 686 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDD-MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ---GIK--------LGTVS 686 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCC--------CCHHH
Confidence 999999999999999999999 5 37899999999999999999999888888777763 333 89999
Q ss_pred HHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCCCC---
Q 044791 496 AISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPART--- 572 (623)
Q Consensus 496 ~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~~--- 572 (623)
|+++|.+|++.|++ ++|+++|++|++.|+.||..+|+.+|. .+++.|++++|++++.+|...
T Consensus 687 ynsLI~ay~k~G~~--------eeA~~lf~eM~~~g~~PdvvtyN~LI~-------gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 687 YSSLMGACSNAKNW--------KKALELYEDIKSIKLRPTVSTMNALIT-------ALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHHHHHhCCCH--------HHHHHHHHHHHHcCCCCCHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999987 799999999999999999999999996 889999999999999988532
Q ss_pred hh-----HHHhhHhhhcchhHHHHHHHHHhCCcee
Q 044791 573 PL-----RIIKNLRVCGDCHNAIKIMSRIVGRELI 602 (623)
Q Consensus 573 ~~-----~i~~~l~~~g~~~~a~~l~~~~~~~~~~ 602 (623)
|. .++.++.+.|+.++|.+++..|.+.++.
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 22 3667889999999999999999988763
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=440.21 Aligned_cols=299 Identities=17% Similarity=0.240 Sum_probs=208.7
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHH----cCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044791 245 VLPPSVADLARLCQEGKVKEAIELMD----KGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIE 320 (623)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~l~~----~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~ 320 (623)
+..+|++||.+|++.|++++|+++|+ .|+.||..+|++||.+|++.|++++|+++|++|++.|+.||..+|++||.
T Consensus 471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~ 550 (1060)
T PLN03218 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45666677777777777777777764 36677777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHhh------cCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044791 321 MYGKCGSMTDARRVFDHMA------DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAI 394 (623)
Q Consensus 321 ~y~k~g~~~~A~~lf~~m~------~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~ 394 (623)
+|++.|++++|+++|++|. .+|.++|++||.+|++.|++++|+++|++|.+.|+.|+..+|++||.+|++.|++
T Consensus 551 a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~ 630 (1060)
T PLN03218 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence 7777777777777777774 2466677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 044791 395 EEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKL--PFEPTAEFWEALRNYARIHGDIDLEDHAEEL 472 (623)
Q Consensus 395 e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m--~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~ 472 (623)
++|+++|++|.+. |+.||..+|++||++|++.|++++|.++|+++. ++.||..+|++||.+|++.|++++|.++++.
T Consensus 631 deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 631 DFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7777777777755 777777777777777777777777777777622 3566777777777777777777766666666
Q ss_pred HHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHH
Q 044791 473 MVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQAL 552 (623)
Q Consensus 473 ~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~ 552 (623)
|.+. +.. ||..+|++||.+|++.|++ ++|+++|++|++.|+.||..||..+|. .
T Consensus 710 M~~~---g~~--------PdvvtyN~LI~gy~k~G~~--------eeAlelf~eM~~~Gi~Pd~~Ty~sLL~-------a 763 (1060)
T PLN03218 710 IKSI---KLR--------PTVSTMNALITALCEGNQL--------PKALEVLSEMKRLGLCPNTITYSILLV-------A 763 (1060)
T ss_pred HHHc---CCC--------CCHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHHcCCCCCHHHHHHHHH-------H
Confidence 5543 222 6677777777777777766 577777777777777777777777664 5
Q ss_pred HHHHhHHHHHHhcccCCC
Q 044791 553 LYHSERLAIAYGLISTPA 570 (623)
Q Consensus 553 ~~~~g~l~~A~~ll~~m~ 570 (623)
+++.|++++|..++..|.
T Consensus 764 ~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666666666666666654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-46 Score=437.11 Aligned_cols=393 Identities=19% Similarity=0.241 Sum_probs=321.0
Q ss_pred CCCCCCcc--ccccc-----cCCChHHHHHHHHHhcCCCCCCCccCCcccccc---------------------------
Q 044791 192 FQQPRSPN--QWNNQ-----QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMN--------------------------- 237 (623)
Q Consensus 192 ~~~~~~p~--~w~~~-----~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~--------------------------- 237 (623)
|+....++ .|+.+ +.|++++|+++|++|...+..|+...+...+..
T Consensus 144 f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (857)
T PLN03077 144 FGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD 223 (857)
T ss_pred HhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccc
Confidence 55544444 88877 899999999999999887888875544211111
Q ss_pred --------CCCCC-------------CCCchHHHHHHHHHHHcCCHHHHHHHHH----cCCCCCHHHHHHHHHHHhCCCC
Q 044791 238 --------QCPAG-------------DQVLPPSVADLARLCQEGKVKEAIELMD----KGVKADASCFYTLFELCGNPKW 292 (623)
Q Consensus 238 --------~~~~~-------------~~~~~~~~~li~~~~~~g~~~~A~~l~~----~~~~pd~~ty~~Ll~~~~~~g~ 292 (623)
+|+.+ ..+..+|++||.+|++.|++++|+++|+ .|+.||..||+.+|.+|++.|+
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 11111 1244566677777777777777777664 3777888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 293 YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 293 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
++.|.+++..|++.|+.||..+||+||.+|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHH
Q 044791 373 GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEA 452 (623)
Q Consensus 373 g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~ 452 (623)
|+.||..||+++|.+|++.|++++|.++++.|.+. |+.++..+|++||++|+++|++++|.++|++ |. ++|.++|++
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~-m~-~~d~vs~~~ 460 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHN-IP-EKDVISWTS 460 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHh-CC-CCCeeeHHH
Confidence 99999999999999999999999999999999977 9999999999999999999999999999999 87 689999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCc
Q 044791 453 LRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTY 532 (623)
Q Consensus 453 Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi 532 (623)
||.+|+..|+.++|.++++.|.+ +.. ||..||.++|.+|++.|.+ +++.+++..|.+.|+
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~----~~~--------pd~~t~~~lL~a~~~~g~l--------~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLL----TLK--------PNSVTLIAALSACARIGAL--------MCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh----CCC--------CCHhHHHHHHHHHhhhchH--------HHhHHHHHHHHHhCC
Confidence 99999999999988888888764 233 9999999999999999987 699999999999999
Q ss_pred ccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCCCC---hhHHHhhHhhhcchhHHHHHHHHHhCCceeeecCCcc
Q 044791 533 VPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPART---PLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRF 609 (623)
Q Consensus 533 ~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~~---~~~i~~~l~~~g~~~~a~~l~~~~~~~~~~~rd~~~~ 609 (623)
.+|..+++.+|+ .+++.|++++|+.+++.+... ...++..|...|+.++|+++|.+|.+.++ ..|...|
T Consensus 521 ~~~~~~~naLi~-------~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~-~Pd~~T~ 592 (857)
T PLN03077 521 GFDGFLPNALLD-------LYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV-NPDEVTF 592 (857)
T ss_pred CccceechHHHH-------HHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCcccH
Confidence 999999999986 677777777777777666211 12355566666777777777777766553 2344445
Q ss_pred cccccc
Q 044791 610 HHFKDG 615 (623)
Q Consensus 610 ~~~~~~ 615 (623)
..+..+
T Consensus 593 ~~ll~a 598 (857)
T PLN03077 593 ISLLCA 598 (857)
T ss_pred HHHHHH
Confidence 444444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-18 Score=188.15 Aligned_cols=291 Identities=13% Similarity=0.068 Sum_probs=237.8
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCC-CC------H
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVK-AD------A 277 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~-pd------~ 277 (623)
..|++++|+..|+++... .|+ ....+..+...+.+.|++++|+.+++..+. ++ .
T Consensus 47 ~~~~~~~A~~~~~~al~~--~p~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 107 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKV--DPE-----------------TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL 107 (389)
T ss_pred hcCChHHHHHHHHHHHhc--Ccc-----------------cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH
Confidence 689999999999999441 221 223556788889999999999999975322 11 2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCh--------HHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSM--------DSWHLM 349 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~--------~tyn~L 349 (623)
.++..++..|.+.|++++|+++|+++.+.. ..+..++..++.+|.+.|++++|+++|+.+.+.+. ..|..+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 568889999999999999999999998863 34678999999999999999999999999976421 146678
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCC
Q 044791 350 INGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGH 429 (623)
Q Consensus 350 i~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~ 429 (623)
+..+.+.|++++|+.+|+++.+.. .-+..++..+...+.+.|++++|.++|+++... +-.....+++.|+.+|++.|+
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCC
Confidence 888999999999999999999763 224567888889999999999999999999854 222224568889999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCc---c
Q 044791 430 LFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSR---L 506 (623)
Q Consensus 430 ~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~---~ 506 (623)
+++|..+++++....|+...+..++..+.+.|++++|..+++.+.+.. |+..++..++..+.. .
T Consensus 265 ~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~-------------P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRH-------------PSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------------cCHHHHHHHHHHhhhccCC
Confidence 999999999966677888788889999999999999999998877753 667788888887664 3
Q ss_pred ccccCCcccchHHHHHHHHHHHHCCcccCcce
Q 044791 507 VEFRNPTLYRDDEKLKALNQMKESTYVPDTRY 538 (623)
Q Consensus 507 ~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t 538 (623)
|+. ++++.+|++|.+.+++|+...
T Consensus 332 g~~--------~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 332 GRA--------KESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred ccc--------hhHHHHHHHHHHHHHhCCCCE
Confidence 344 599999999999999988874
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-17 Score=193.71 Aligned_cols=249 Identities=13% Similarity=0.032 Sum_probs=119.4
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC--C-CCCHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG--V-KADASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~-~pd~~ty~ 281 (623)
..|++++|++.|+++... .|+ ....+..+...+.+.|++++|+.+|++. . ..+...+.
T Consensus 511 ~~g~~~~A~~~~~~~~~~--~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 571 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTI--DPK-----------------NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571 (899)
T ss_pred HCCCHHHHHHHHHHHHHh--CcC-----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHH
Confidence 678888888888877331 111 1123334444555555555555555431 1 11233444
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCC
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGL 358 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~ 358 (623)
.++..+.+.|++++|.++++++.+.. ..+..+|..++.+|.+.|++++|+..|+++.+. +...|..+..+|.+.|+
T Consensus 572 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKN 650 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 45555555555555555555554432 224445555555555555555555555544321 23344455555555555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHH
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIE 438 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~ 438 (623)
+++|+.+|+++.+.. ..+..++..++..+...|++++|..+++.+... ...+...+..+...+.+.|++++|+++|+
T Consensus 651 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 651 YAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555554431 112344444455555555555555555554432 11233344444444445555555555555
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 439 QKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 439 ~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
+++...|+..++..+..++...|+.++|.+.++.+.+.
T Consensus 728 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 728 KALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 43333444444444444444555555444444444443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-17 Score=179.10 Aligned_cols=267 Identities=13% Similarity=0.097 Sum_probs=215.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHc--CCCCC-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHH
Q 044791 251 ADLARLCQEGKVKEAIELMDK--GVKAD-ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD---LVLNNKVIEMYGK 324 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~--~~~pd-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~y~~Li~~y~k 324 (623)
.+...+...|++++|++.|++ ...|+ ..++..+...+...|++++|..+++.+++.+..++ ..++..|+..|.+
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 334556788999999999976 33454 45788999999999999999999999988643322 3578889999999
Q ss_pred cCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 044791 325 CGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE----QTFLAVFSACGSADAIEEA 397 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~----~ty~~li~a~~~~g~~e~A 397 (623)
.|++++|+.+|+++.+ .+..+++.++..+.+.|++++|+++|++|.+.+..+.. ..|..+...+.+.|++++|
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999986 45668999999999999999999999999986544322 2456677788899999999
Q ss_pred HHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHH
Q 044791 398 FIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA--EFWEALRNYARIHGDIDLEDHAEELMV 474 (623)
Q Consensus 398 ~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~--~ty~~Li~a~~~~g~~~~A~~~~~~~~ 474 (623)
..+|+++.+. .| +...+..+...|.+.|++++|.++|++++...|+. .+++.|+.+|...|+.++|...++.+.
T Consensus 200 ~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 200 RALLKKALAA---DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHhH---CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999853 34 35577788899999999999999999966555653 568889999999999999999999988
Q ss_pred hcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeecc
Q 044791 475 DLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDI 543 (623)
Q Consensus 475 ~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li 543 (623)
++.+ +...+..+...+.+.|++ ++|+++|+++.+. .|+..++..++
T Consensus 277 ~~~p-------------~~~~~~~la~~~~~~g~~--------~~A~~~l~~~l~~--~P~~~~~~~l~ 322 (389)
T PRK11788 277 EEYP-------------GADLLLALAQLLEEQEGP--------EAAQALLREQLRR--HPSLRGFHRLL 322 (389)
T ss_pred HhCC-------------CchHHHHHHHHHHHhCCH--------HHHHHHHHHHHHh--CcCHHHHHHHH
Confidence 8643 344567888889999987 6999999877665 58877666555
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-17 Score=191.93 Aligned_cols=355 Identities=15% Similarity=0.153 Sum_probs=256.2
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC---CCCCHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG---VKADASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~---~~pd~~ty~ 281 (623)
..|++++|++.|+++.. ..|+ ....+..+...+...|++++|.++|++. ...+..++.
T Consensus 477 ~~~~~~~A~~~~~~a~~--~~~~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 537 (899)
T TIGR02917 477 GKGDLAKAREAFEKALS--IEPD-----------------FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAIL 537 (899)
T ss_pred hCCCHHHHHHHHHHHHh--hCCC-----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 88999999999998843 1121 2234557788899999999999999752 233567899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCC
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGL 358 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~ 358 (623)
.+...+.+.|+.++|..+++++.+.+ ..+...+..++..|.+.|++++|+.+++++.+ .+...|..++.+|...|+
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999998864 34678888999999999999999999999875 356689999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHH
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFI 437 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf 437 (623)
+++|+..|+++.+.. ..+...+..+..++...|++++|..+|+++.+ ..| +..++..++..+...|++++|.+++
T Consensus 617 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 617 LNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE---LKPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999998764 23567888999999999999999999999984 334 5778999999999999999999999
Q ss_pred HhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCC---------------------CCCCCCCchhh
Q 044791 438 EQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPK---------------------KIPTPPPKKRT 495 (623)
Q Consensus 438 ~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~---------------------~~~~~~p~~~t 495 (623)
+.+....| +...+..+...+...|++++|.+.++.+.+..+...... .+.....+...
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 772 (899)
T TIGR02917 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL 772 (899)
T ss_pred HHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99333334 667888889999999999999999999888765541100 00111223344
Q ss_pred HHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCc-ceeeeccCHHHHHHHHHHHHhHHHHHHhcccCC----C
Q 044791 496 AISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDT-RYVLHDIDQEAKEQALLYHSERLAIAYGLISTP----A 570 (623)
Q Consensus 496 ~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~-~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m----~ 570 (623)
+..+...+...|++ ++|+++|+++.+.. |+. ..+..+ +.++...|+ .+|+.++++. +
T Consensus 773 ~~~la~~~~~~g~~--------~~A~~~~~~~~~~~--p~~~~~~~~l-------~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 773 RTALAELYLAQKDY--------DKAIKHYRTVVKKA--PDNAVVLNNL-------AWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHHHHHHCcCH--------HHHHHHHHHHHHhC--CCCHHHHHHH-------HHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 44455555555655 57777777776543 332 222221 123344444 4455444332 1
Q ss_pred CChh---HHHhhHhhhcchhHHHHHHHHHhCCce
Q 044791 571 RTPL---RIIKNLRVCGDCHNAIKIMSRIVGREL 601 (623)
Q Consensus 571 ~~~~---~i~~~l~~~g~~~~a~~l~~~~~~~~~ 601 (623)
..+. .+-..+..-|+.++|.+++.++.+.+.
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1111 112223455667777777777665543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-15 Score=158.48 Aligned_cols=257 Identities=15% Similarity=0.165 Sum_probs=218.5
Q ss_pred ccccc-----cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--C
Q 044791 200 QWNNQ-----QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--G 272 (623)
Q Consensus 200 ~w~~~-----~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~ 272 (623)
.|+++ .+|++-.|+.-|++..+ ..|+ ....|.+|...|...+.+++|+..|.+ .
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~-----------------f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPN-----------------FLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhc--CCCc-----------------chHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 67776 66777777777776533 2222 335666889999999999999999976 5
Q ss_pred CCCCH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC---hHHHH
Q 044791 273 VKADA-SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD-LVLNNKVIEMYGKCGSMTDARRVFDHMADRS---MDSWH 347 (623)
Q Consensus 273 ~~pd~-~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~---~~tyn 347 (623)
..|+. +.|..|...|...|.+|.|++.|++.++. .|+ ...|+.|.+++-..|++++|+..|.+..... ..+.+
T Consensus 281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~ 358 (966)
T KOG4626|consen 281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN 358 (966)
T ss_pred cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH
Confidence 56654 67889999999999999999999999884 555 6889999999999999999999999887532 34889
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccchhhHHHHHH
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKLGLQPN-EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEHYLGLVGVLG 425 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd-~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~~ 425 (623)
.|...|...|++++|..+|....+ +.|. ...++.|...|-..|++++|+..|++.+ .++|+ ...|+.|...|-
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHH
Confidence 999999999999999999999887 4554 4688999999999999999999999988 78886 568999999999
Q ss_pred hcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCC
Q 044791 426 KCGHLFEAQQFIEQKLPFEPTA-EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKAD 482 (623)
Q Consensus 426 k~g~~e~A~~lf~~~m~~~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~ 482 (623)
..|++++|+..+.+++.+.|.. ..++.|...|...|++.+|+..++....++|+...
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 9999999999999988888865 68899999999999999999999999999988654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-14 Score=162.91 Aligned_cols=312 Identities=9% Similarity=-0.018 Sum_probs=207.6
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCC-HHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKAD-ASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd-~~ty~ 281 (623)
++|++++|..+++.+.. ..|+.... ...++.++...|++++|++.|++ ...|+ ...+.
T Consensus 54 ~~g~~~~A~~l~~~~l~--~~p~~~~~-----------------l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~ 114 (656)
T PRK15174 54 RKDETDVGLTLLSDRVL--TAKNGRDL-----------------LRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVL 114 (656)
T ss_pred hcCCcchhHHHhHHHHH--hCCCchhH-----------------HHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 88999999999997743 33333222 22555666678888888888875 34453 45677
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--C-ChHHHHHHHHHHHHcCC
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD--R-SMDSWHLMINGYADNGL 358 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~tyn~Li~~~~~~g~ 358 (623)
.+..++...|++++|++.++++++.. +.+...+..++.++...|++++|+.+++.+.. + +...+..+ ..+...|+
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~ 192 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSR 192 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCC
Confidence 77778888888888888888887742 23467777888888888888888888877643 2 22233333 34777888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHH----H
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFE----A 433 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~----A 433 (623)
+++|+.+++.+++....++...+..+..++...|++++|+..|+.+.+. .| +...+..|..+|...|++++ |
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~---~p~~~~~~~~Lg~~l~~~G~~~eA~~~A 269 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR---GLDGAALRRSLGLAYYQSGRSREAKLQA 269 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhhHHHH
Confidence 8888888888776543334455555667777888888888888887743 33 45566677777888888775 7
Q ss_pred HHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCC
Q 044791 434 QQFIEQKLPFEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNP 512 (623)
Q Consensus 434 ~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~ 512 (623)
+..|++++...|+ ...+..+...+...|++++|...++...++.+... .....+-..+...|++
T Consensus 270 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~------------~a~~~La~~l~~~G~~--- 334 (656)
T PRK15174 270 AEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP------------YVRAMYARALRQVGQY--- 334 (656)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHCCCH---
Confidence 7888886666664 45777777788888888888888888777665432 2344455666667766
Q ss_pred cccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccC
Q 044791 513 TLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLIST 568 (623)
Q Consensus 513 ~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~ 568 (623)
++|++.|+.+.+. .|+...+.. ..+.++...|+.++|...+..
T Consensus 335 -----~eA~~~l~~al~~--~P~~~~~~~------~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 335 -----TAASDEFVQLARE--KGVTSKWNR------YAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred -----HHHHHHHHHHHHh--CccchHHHH------HHHHHHHHCCCHHHHHHHHHH
Confidence 5788777666543 244322111 112244555666666555443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-13 Score=156.68 Aligned_cols=347 Identities=14% Similarity=0.078 Sum_probs=248.2
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC--CCCC-HHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG--VKAD-ASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~pd-~~ty~ 281 (623)
..|+|++|++.|++... ..|+ ...+..+..+|.+.|++++|++.+++. +.|+ ..+|.
T Consensus 139 ~~~~~~~Ai~~y~~al~--~~p~------------------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~ 198 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIE--CKPD------------------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALN 198 (615)
T ss_pred HcCCHHHHHHHHHHHHh--cCCc------------------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 78999999999998744 2222 124557888999999999999999863 4453 45788
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC-C---------------------------CC----CHHHHHHH-----------
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQST-I---------------------------RG----DLVLNNKV----------- 318 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g-~---------------------------~p----d~~~y~~L----------- 318 (623)
.+..++...|++++|+..|..+...+ + .| .......+
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence 89999999999999987665443211 0 00 00000000
Q ss_pred ----------------HHHH------HHcCCHHHHHHHHHHhhcC------ChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044791 319 ----------------IEMY------GKCGSMTDARRVFDHMADR------SMDSWHLMINGYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 319 ----------------i~~y------~k~g~~~~A~~lf~~m~~~------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~ 370 (623)
+..+ ...+++++|+++|++..+. ....|+.+...+...|++++|+..|++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0000 1235789999999988753 23478889999999999999999999998
Q ss_pred HcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-H
Q 044791 371 KLGLQPN-EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-A 447 (623)
Q Consensus 371 ~~g~~Pd-~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-~ 447 (623)
+. .|+ ..+|..+...+...|++++|+..|+.+.+. .| +..+|..+...|...|++++|+..|++++.+.|+ .
T Consensus 359 ~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 359 EL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL---NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred Hc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 75 455 568888889999999999999999998843 44 4678888999999999999999999998887775 5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHH
Q 044791 448 EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQM 527 (623)
Q Consensus 448 ~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M 527 (623)
..|..+..++.+.|++++|...++...+..+.. ...+..+-..+...|++ ++|++.|++-
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~------------~~~~~~lg~~~~~~g~~--------~~A~~~~~~A 493 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA------------PDVYNYYGELLLDQNKF--------DEAIEKFDTA 493 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHccCH--------HHHHHHHHHH
Confidence 677788889999999999999999988876553 33566666777788887 6999999776
Q ss_pred HHCCcccCcc-eeeeccCHHHHHHHHHHHHhHHHHHHhcccCC----CCChh---HHHhhHhhhcchhHHHHHHHHHhC
Q 044791 528 KESTYVPDTR-YVLHDIDQEAKEQALLYHSERLAIAYGLISTP----ARTPL---RIIKNLRVCGDCHNAIKIMSRIVG 598 (623)
Q Consensus 528 ~~~Gi~Pd~~-t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m----~~~~~---~i~~~l~~~g~~~~a~~l~~~~~~ 598 (623)
.+. .|+.. .+..+.....+...++...|++++|..++.+. +.... .+-..+...|+.++|++++.+..+
T Consensus 494 l~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 494 IEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred Hhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 543 23321 12221111122222333457888888776542 22221 234556788999999999888653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.3e-15 Score=154.96 Aligned_cols=310 Identities=15% Similarity=0.145 Sum_probs=247.4
Q ss_pred ccccccc-----cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCC-----------------CCCCCchHHHHHHHH
Q 044791 198 PNQWNNQ-----QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCP-----------------AGDQVLPPSVADLAR 255 (623)
Q Consensus 198 p~~w~~~-----~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~-----------------~~~~~~~~~~~li~~ 255 (623)
.+.|.++ ++|+.+.|...|..... ..|+.......+.+..+ ..+.....+..|...
T Consensus 150 ida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~ 227 (966)
T KOG4626|consen 150 IDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCV 227 (966)
T ss_pred hHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchH
Confidence 3477777 78888888888876644 44543332222222111 111123344577788
Q ss_pred HHHcCCHHHHHHHHHcCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 044791 256 LCQEGKVKEAIELMDKGVKADA---SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRG-DLVLNNKVIEMYGKCGSMTDA 331 (623)
Q Consensus 256 ~~~~g~~~~A~~l~~~~~~pd~---~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~y~~Li~~y~k~g~~~~A 331 (623)
|-..|++-+|+.-|++.++.|. ..|-.|..+|...+.++.|+..|.+.... .| ..++|..|...|...|.+|-|
T Consensus 228 f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlA 305 (966)
T KOG4626|consen 228 FNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLA 305 (966)
T ss_pred HhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHH
Confidence 8899999999999998777664 57999999999999999999999888774 44 478999999999999999999
Q ss_pred HHHHHHhhcCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 332 RRVFDHMADRSM---DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN-EQTFLAVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 332 ~~lf~~m~~~~~---~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd-~~ty~~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
+..|++..+.+. ..|+.|..++-..|++.||...|.+.+.. .|+ ..+.+.|...+.+.|.+++|..+|+...
T Consensus 306 I~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al-- 381 (966)
T KOG4626|consen 306 IDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKAL-- 381 (966)
T ss_pred HHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHH--
Confidence 999999876543 49999999999999999999999999875 443 4678899999999999999999998877
Q ss_pred cCCCCC-ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCC
Q 044791 408 FGISPG-TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKK 485 (623)
Q Consensus 408 ~g~~p~-~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~ 485 (623)
.+.|. ...++.|...|-..|++++|+..|++++.+.|+. ..|+.|.+.|...|+++.|...+.+.....|.-.
T Consensus 382 -~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A---- 456 (966)
T KOG4626|consen 382 -EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA---- 456 (966)
T ss_pred -hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH----
Confidence 56665 5678999999999999999999999999999986 6999999999999999999999999988776543
Q ss_pred CCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcce
Q 044791 486 IPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRY 538 (623)
Q Consensus 486 ~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t 538 (623)
..++.|-+.+...|.. .+|+.-++.-. .++||..-
T Consensus 457 --------eAhsNLasi~kDsGni--------~~AI~sY~~aL--klkPDfpd 491 (966)
T KOG4626|consen 457 --------EAHSNLASIYKDSGNI--------PEAIQSYRTAL--KLKPDFPD 491 (966)
T ss_pred --------HHHhhHHHHhhccCCc--------HHHHHHHHHHH--ccCCCCch
Confidence 3667777778888865 68988885443 46677643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-13 Score=154.38 Aligned_cols=318 Identities=11% Similarity=-0.029 Sum_probs=241.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHc--CCCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044791 250 VADLARLCQEGKVKEAIELMDK--GVKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG 326 (623)
Q Consensus 250 ~~li~~~~~~g~~~~A~~l~~~--~~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g 326 (623)
..++..+.+.|++++|+.+++. ...| +...+..++.++...|++++|++.++++++.. +-+...+..+..++.+.|
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 3567788899999999999975 3334 34566677777788999999999999999863 335778889999999999
Q ss_pred CHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044791 327 SMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFES 403 (623)
Q Consensus 327 ~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~ 403 (623)
++++|+..|+++.+ .+...|..++..+...|++++|...++.+......+. ..+..+ ..+...|++++|..+++.
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~-~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG-DMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH-HHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 99999999999875 3455899999999999999999999999887643332 233333 347889999999999999
Q ss_pred HHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhH----HHHHHHHHHhcCC
Q 044791 404 MKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDL----EDHAEELMVDLDP 478 (623)
Q Consensus 404 m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~----A~~~~~~~~~m~~ 478 (623)
+... .-..+...+..+..++.+.|++++|+..|++++...| +...+..|...|...|+.++ |...++...++.|
T Consensus 203 ~l~~-~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPF-FALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhc-CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 8754 2122334455567889999999999999999766666 45778888899999999986 7888888888776
Q ss_pred CCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhH
Q 044791 479 SKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSER 558 (623)
Q Consensus 479 ~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~ 558 (623)
.. ...+..+-..+...|++ ++|+.++++..+. .|+.......+ +..+...|+
T Consensus 282 ~~------------~~a~~~lg~~l~~~g~~--------~eA~~~l~~al~l--~P~~~~a~~~L------a~~l~~~G~ 333 (656)
T PRK15174 282 DN------------VRIVTLYADALIRTGQN--------EKAIPLLQQSLAT--HPDLPYVRAMY------ARALRQVGQ 333 (656)
T ss_pred CC------------HHHHHHHHHHHHHCCCH--------HHHHHHHHHHHHh--CCCCHHHHHHH------HHHHHHCCC
Confidence 53 34677777888888888 6999999777653 46644322222 246777899
Q ss_pred HHHHHhcccCCC----CChh-H--HHhhHhhhcchhHHHHHHHHHhCC
Q 044791 559 LAIAYGLISTPA----RTPL-R--IIKNLRVCGDCHNAIKIMSRIVGR 599 (623)
Q Consensus 559 l~~A~~ll~~m~----~~~~-~--i~~~l~~~g~~~~a~~l~~~~~~~ 599 (623)
.++|...+.... .... . .-..+...|+.++|.+.+.+....
T Consensus 334 ~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 334 YTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999988776532 2211 1 223467889999999999887654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.3e-12 Score=142.80 Aligned_cols=317 Identities=15% Similarity=0.135 Sum_probs=232.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHc--CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 044791 251 ADLARLCQEGKVKEAIELMDK--GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSM 328 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~--~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~ 328 (623)
.+...|.+.|++++|++.|++ .+.|+...|..+..+|.+.|++++|++.+++.++.. +.+...|..+..+|...|++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 456778999999999999987 566888899999999999999999999999999853 23577899999999999999
Q ss_pred HHHHHHHHHhhcCC---------------------------------hHHHHHHHH------------------------
Q 044791 329 TDARRVFDHMADRS---------------------------------MDSWHLMIN------------------------ 351 (623)
Q Consensus 329 ~~A~~lf~~m~~~~---------------------------------~~tyn~Li~------------------------ 351 (623)
++|+..|..+...+ ..++..+..
T Consensus 211 ~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290 (615)
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence 99987664432110 000000000
Q ss_pred --HH----------HHcCChHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccc
Q 044791 352 --GY----------ADNGLGDEGLQLFEQMRKLG-LQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEH 416 (623)
Q Consensus 352 --~~----------~~~g~~eeA~~l~~eM~~~g-~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~t 416 (623)
++ ...+++++|+++|++..+.+ ..| +...|+.+...+...|++++|+..|+... .+.|+ ...
T Consensus 291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal---~l~P~~~~~ 367 (615)
T TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI---ELDPRVTQS 367 (615)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHH
Confidence 00 12357899999999999865 334 44678888888999999999999999988 44565 557
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhh
Q 044791 417 YLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRT 495 (623)
Q Consensus 417 y~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t 495 (623)
|..+..++...|++++|+..|++++...| +...|..+...+...|++++|...++...++.+... ..
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~------------~~ 435 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI------------FS 435 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH------------HH
Confidence 88888999999999999999999777666 467888999999999999999999999999876543 35
Q ss_pred HHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCC----CC
Q 044791 496 AISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTP----AR 571 (623)
Q Consensus 496 ~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m----~~ 571 (623)
+..+-..+.+.|++ ++|+..|++..+. .|+..... ...+.++...|++++|...+..- +.
T Consensus 436 ~~~la~~~~~~g~~--------~eA~~~~~~al~~--~P~~~~~~------~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 436 HIQLGVTQYKEGSI--------ASSMATFRRCKKN--FPEAPDVY------NYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHHHHHCCCH--------HHHHHHHHHHHHh--CCCChHHH------HHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 55666777788887 7999999776643 35532211 12234667778888887665441 11
Q ss_pred -Chh--H---HHh-h---HhhhcchhHHHHHHHHHhCC
Q 044791 572 -TPL--R---IIK-N---LRVCGDCHNAIKIMSRIVGR 599 (623)
Q Consensus 572 -~~~--~---i~~-~---l~~~g~~~~a~~l~~~~~~~ 599 (623)
... . ++. . +...|+..+|.+++.+...-
T Consensus 500 ~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 500 TKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred cccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 110 1 111 1 12247888899988876543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-11 Score=150.86 Aligned_cols=338 Identities=13% Similarity=0.092 Sum_probs=230.4
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCC--CCCH---HH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGV--KADA---SC 279 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~--~pd~---~t 279 (623)
..|++++|+..|++..+ ..|+ +...+..|..+|.+.|++++|+..|++.+ .|+. ..
T Consensus 281 ~~g~~~~A~~~l~~aL~--~~P~-----------------~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~ 341 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVR--ANPK-----------------DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341 (1157)
T ss_pred HCCCHHHHHHHHHHHHH--hCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH
Confidence 78999999999998844 2222 22345577888899999999999997633 2322 11
Q ss_pred H------------HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC---hH
Q 044791 280 F------------YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRS---MD 344 (623)
Q Consensus 280 y------------~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~---~~ 344 (623)
+ ..+...+.+.|++++|++.|+++++.. +.+...+..|..+|...|++++|++.|+++.+.+ ..
T Consensus 342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~ 420 (1157)
T PRK11447 342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN 420 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 1 122446778899999999999998863 3356778888999999999999999999886421 11
Q ss_pred HHH------------------------------------------HHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHH
Q 044791 345 SWH------------------------------------------LMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTF 381 (623)
Q Consensus 345 tyn------------------------------------------~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty 381 (623)
.+. .+...+...|++++|++.|++.++. .| +...+
T Consensus 421 a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~ 498 (1157)
T PRK11447 421 AVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLT 498 (1157)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 222 2334456789999999999998875 44 45677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhH----------------------------------------
Q 044791 382 LAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGL---------------------------------------- 420 (623)
Q Consensus 382 ~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~L---------------------------------------- 420 (623)
..+...|.+.|++++|+..|+++.+. .| +...+..+
T Consensus 499 ~~LA~~~~~~G~~~~A~~~l~~al~~---~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 499 YRLAQDLRQAGQRSQADALMRRLAQQ---KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 78888899999999999999988743 23 22222222
Q ss_pred ----HHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhH
Q 044791 421 ----VGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTA 496 (623)
Q Consensus 421 ----i~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~ 496 (623)
...+...|+.++|+++++. - ..+...+..|...+.+.|+.++|++.++.+.+..|.+. ...
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~-~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~------------~a~ 640 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQ-Q--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNA------------DAR 640 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh-C--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------------HHH
Confidence 2334445555555555554 1 22445566777888899999999999999988876643 366
Q ss_pred HHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCCC-----
Q 044791 497 ISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPAR----- 571 (623)
Q Consensus 497 ~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~----- 571 (623)
..+...+...|++ ++|++.|+...+ ..|+.... ....+.++...|+.++|..+++....
T Consensus 641 ~~la~~~~~~g~~--------~eA~~~l~~ll~--~~p~~~~~------~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 641 LGLIEVDIAQGDL--------AAARAQLAKLPA--TANDSLNT------QRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHHHHHHCCCH--------HHHHHHHHHHhc--cCCCChHH------HHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 7778888888887 699999975543 34543322 12223456677888888877765321
Q ss_pred Ch---hH-HH----hhHhhhcchhHHHHHHHHHhC
Q 044791 572 TP---LR-II----KNLRVCGDCHNAIKIMSRIVG 598 (623)
Q Consensus 572 ~~---~~-i~----~~l~~~g~~~~a~~l~~~~~~ 598 (623)
.+ .. +. ..+...|+..+|++.+...+.
T Consensus 705 ~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 705 PPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11 11 22 234677889999998888764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-11 Score=148.59 Aligned_cols=314 Identities=12% Similarity=0.061 Sum_probs=192.9
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCC--CCC-HHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGV--KAD-ASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~--~pd-~~ty~ 281 (623)
..|++++|++.|+++.. ..|+ ....+..|...+...|++++|++.|++.+ .|+ ...+.
T Consensus 363 ~~g~~~eA~~~~~~Al~--~~P~-----------------~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 363 KANNLAQAERLYQQARQ--VDNT-----------------DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred HCCCHHHHHHHHHHHHH--hCCC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 78999999999998844 1221 12344467788899999999999997633 343 33333
Q ss_pred HHHHH------------------------------------------HhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044791 282 TLFEL------------------------------------------CGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVI 319 (623)
Q Consensus 282 ~Ll~~------------------------------------------~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li 319 (623)
.+... +...|++++|+++|++.++... -+..++..+.
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA 502 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLA 502 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 33333 3345566666666666655321 1345555566
Q ss_pred HHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH---------HHHHHHHHH
Q 044791 320 EMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE---------QTFLAVFSA 387 (623)
Q Consensus 320 ~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~---------~ty~~li~a 387 (623)
.+|.+.|++++|+.+|+++.+. +...+..+...+...|+.++|+..++++......++. ..+..+...
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 6666666666666666655431 2233333444455556666666666554322111111 112234555
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHH
Q 044791 388 CGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLE 466 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A 466 (623)
+...|+.++|+++++. ...+...+..|...|.+.|+.++|+++|++++...| +...+..++..|...|+.++|
T Consensus 583 l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 6677777777777651 123455677888999999999999999999777677 567899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcc-cCcceeeeccCH
Q 044791 467 DHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYV-PDTRYVLHDIDQ 545 (623)
Q Consensus 467 ~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~-Pd~~t~~~li~~ 545 (623)
++.++.+.+..+... .....+-.++...|++ ++|+++|+++....-. |... ...++
T Consensus 657 ~~~l~~ll~~~p~~~------------~~~~~la~~~~~~g~~--------~eA~~~~~~al~~~~~~~~~~-~~a~~-- 713 (1157)
T PRK11447 657 RAQLAKLPATANDSL------------NTQRRVALAWAALGDT--------AAAQRTFNRLIPQAKSQPPSM-ESALV-- 713 (1157)
T ss_pred HHHHHHHhccCCCCh------------HHHHHHHHHHHhCCCH--------HHHHHHHHHHhhhCccCCcch-hhHHH--
Confidence 999998877654432 2334445556677777 6999999887654311 1100 00000
Q ss_pred HHHHHHHHHHHhHHHHHHhccc
Q 044791 546 EAKEQALLYHSERLAIAYGLIS 567 (623)
Q Consensus 546 ~~k~~~~~~~~g~l~~A~~ll~ 567 (623)
....+.++...|+.++|...++
T Consensus 714 ~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 714 LRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 1111234556677777776644
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-10 Score=135.62 Aligned_cols=363 Identities=12% Similarity=0.068 Sum_probs=242.6
Q ss_pred ccccc--cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC--CCC
Q 044791 200 QWNNQ--QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG--VKA 275 (623)
Q Consensus 200 ~w~~~--~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~p 275 (623)
.|..+ ..|+.++|+++|.+... . .......+..+...+.+.|++++|+++|++. ..|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~--~-----------------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRV--H-----------------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--h-----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 57755 79999999999998732 0 0111223557778889999999999999873 334
Q ss_pred -CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHH
Q 044791 276 -DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMIN 351 (623)
Q Consensus 276 -d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~ 351 (623)
+...+..++.++...|++++|+.+++++++.. +.+.. +..+..++...|+.++|+.+|+++.+. +...+..+..
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~ 158 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQ 158 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35667788888999999999999999998862 33556 888899999999999999999988763 3335555666
Q ss_pred HHHHcCChHHHHHHHH----------------------------------------------HHHHc-CCCCCHH-HH--
Q 044791 352 GYADNGLGDEGLQLFE----------------------------------------------QMRKL-GLQPNEQ-TF-- 381 (623)
Q Consensus 352 ~~~~~g~~eeA~~l~~----------------------------------------------eM~~~-g~~Pd~~-ty-- 381 (623)
++...|..++|+..++ .+.+. ...|+.. .+
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 6666666655554443 44422 1122221 11
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-----HHHHHHHH
Q 044791 382 --LAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-----AEFWEALR 454 (623)
Q Consensus 382 --~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-----~~ty~~Li 454 (623)
...+.++...|++++|+..|+.+.+.....|+.. -..+..+|...|++++|+.+|++++...|. ...+..|.
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 1113345677999999999999986521123321 122577899999999999999995554443 24566677
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCch---hhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCC
Q 044791 455 NYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKK---RTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKEST 531 (623)
Q Consensus 455 ~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~---~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~G 531 (623)
.++...|++++|...++.+.+..+.......+....|+. ..+..+...+...|++ ++|+++|+++...
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~--------~eA~~~l~~al~~- 388 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL--------PQAEMRARELAYN- 388 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHh-
Confidence 788999999999999998888765432211122233453 2334455566677877 6999999888654
Q ss_pred cccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCC----CCC-hhHHH--hhHhhhcchhHHHHHHHHHhCCc
Q 044791 532 YVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTP----ART-PLRII--KNLRVCGDCHNAIKIMSRIVGRE 600 (623)
Q Consensus 532 i~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m----~~~-~~~i~--~~l~~~g~~~~a~~l~~~~~~~~ 600 (623)
.|+.... ....+.++...|+.++|+..+++. +.. ...+. .++...|++++|.+++.++.++.
T Consensus 389 -~P~n~~l------~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 389 -APGNQGL------RIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred -CCCCHHH------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 4555321 122334666778888888777653 221 12222 23466689999999999887654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-10 Score=119.33 Aligned_cols=229 Identities=17% Similarity=0.260 Sum_probs=165.4
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHc----CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044791 245 VLPPSVADLARLCQEGKVKEAIELMDK----GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIE 320 (623)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~l~~~----~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~ 320 (623)
+..++..||.++|+--..+.|.++|++ ..+.+..+||.||.+-+ +....+++.+|+...+.||..|+|+|+.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 445677889999998889999988853 56788888998888654 3334788888988888999999999999
Q ss_pred HHHHcCCHHHHH----HHHHHhhcC----ChHHHHHHHHHHHHcCChHH-HHHHHHHHH----HcCCCC----CHHHHHH
Q 044791 321 MYGKCGSMTDAR----RVFDHMADR----SMDSWHLMINGYADNGLGDE-GLQLFEQMR----KLGLQP----NEQTFLA 383 (623)
Q Consensus 321 ~y~k~g~~~~A~----~lf~~m~~~----~~~tyn~Li~~~~~~g~~ee-A~~l~~eM~----~~g~~P----d~~ty~~ 383 (623)
+.++.|+++.|. +++.+|++- ...+|..+|..+++.++..+ |..+..+.. .+.++| |..-|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 999999877654 556677654 44488888888888877644 444444443 223333 4566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCC---CCC---ccchhhHHHHHHhcCCHHHHHHHHHhhCC--CCCCHHHHHHHHH
Q 044791 384 VFSACGSADAIEEAFIHFESMKSEFGI---SPG---TEHYLGLVGVLGKCGHLFEAQQFIEQKLP--FEPTAEFWEALRN 455 (623)
Q Consensus 384 li~a~~~~g~~e~A~~l~~~m~~~~g~---~p~---~~ty~~Li~~~~k~g~~e~A~~lf~~~m~--~~Pd~~ty~~Li~ 455 (623)
.++.|.+..+.+.|..+..-+....+. .++ ..-|..+..+.|.....+.-+..|+.++. ..|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 888888888888888888766643221 222 23466677788888888888888888333 5577778888888
Q ss_pred HHHHcCChhHHHHHHHHHHhcC
Q 044791 456 YARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 456 a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
+.-..|.++...+++..+.+.+
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhh
Confidence 8888888887777776665544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-10 Score=136.04 Aligned_cols=226 Identities=14% Similarity=0.069 Sum_probs=154.1
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--CChHHHHHHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD--RSMDSWHLMINGY 353 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--~~~~tyn~Li~~~ 353 (623)
+...|..+..++.. ++.++|+..+.+.... .|+......+..++...|++++|+..|+++.. ++...+..+..++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 45567777766665 6777788877776663 35544433344445678888888888887654 2334566667777
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHH
Q 044791 354 ADNGLGDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFE 432 (623)
Q Consensus 354 ~~~g~~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~ 432 (623)
.+.|++++|..+|++.++.. |+. ..+..+...+...|++++|...|++.. .+.|+...|..+..++.+.|+.++
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHH
Confidence 88888888888888887653 333 233333344455688888888888777 445667777777888888888888
Q ss_pred HHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccC
Q 044791 433 AQQFIEQKLPFEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRN 511 (623)
Q Consensus 433 A~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~ 511 (623)
|+..|++++...|+ ...++.+..++...|+.++|+.+++...+..|... ..+..+-.++...|++
T Consensus 628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~------------~a~~nLA~al~~lGd~-- 693 (987)
T PRK09782 628 AVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP------------ALIRQLAYVNQRLDDM-- 693 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHCCCH--
Confidence 88888886666674 45666666678888888888888888877766543 3555666666777766
Q ss_pred CcccchHHHHHHHHHHHH
Q 044791 512 PTLYRDDEKLKALNQMKE 529 (623)
Q Consensus 512 ~~~~~~~eal~~~~~M~~ 529 (623)
++|+..|++..+
T Consensus 694 ------~eA~~~l~~Al~ 705 (987)
T PRK09782 694 ------AATQHYARLVID 705 (987)
T ss_pred ------HHHHHHHHHHHh
Confidence 578877765553
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-10 Score=133.61 Aligned_cols=315 Identities=10% Similarity=-0.007 Sum_probs=220.2
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCC-HHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKAD-ASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd-~~ty~ 281 (623)
..|++++|+++|++... ..|+. ......++..+...|++++|+.++++ ...|+ .. +.
T Consensus 61 ~~g~~~~A~~~~~~al~--~~P~~-----------------~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~ 120 (765)
T PRK10049 61 NLKQWQNSLTLWQKALS--LEPQN-----------------DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LL 120 (765)
T ss_pred HcCCHHHHHHHHHHHHH--hCCCC-----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HH
Confidence 89999999999998733 12221 12234777888999999999999976 33453 45 88
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH------------------------
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDH------------------------ 337 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~------------------------ 337 (623)
.+..++...|+.++|+..++++++... -+...+..+..++.+.|..++|++.++.
T Consensus 121 ~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~ 199 (765)
T PRK10049 121 ALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSF 199 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 888899999999999999999999632 2556666777777777777766655553
Q ss_pred ----------------------hhcC---ChH-------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 044791 338 ----------------------MADR---SMD-------SWHLMINGYADNGLGDEGLQLFEQMRKLGLQ-PNEQTFLAV 384 (623)
Q Consensus 338 ----------------------m~~~---~~~-------tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~-Pd~~ty~~l 384 (623)
+.+. +.. .....+.++...|++++|+..|+++++.+-. |+.. -..+
T Consensus 200 ~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~l 278 (765)
T PRK10049 200 MPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWV 278 (765)
T ss_pred ccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHH
Confidence 2210 100 0111133456779999999999999987642 4432 2235
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCC--CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-------------C---
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFGISP--GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-------------T--- 446 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g~~p--~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-------------d--- 446 (623)
..+|...|+.++|+.+|+++.......+ ....+..|..++...|++++|.++++++....| +
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 7789999999999999999874311111 123455667788999999999999998444433 2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHH
Q 044791 447 AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQ 526 (623)
Q Consensus 447 ~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~ 526 (623)
...+..+...+...|+.++|+++++.+.+..|.+. ..+..+...+...|++ ++|++.+++
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~------------~l~~~lA~l~~~~g~~--------~~A~~~l~~ 418 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ------------GLRIDYASVLQARGWP--------RAAENELKK 418 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHhcCCH--------HHHHHHHHH
Confidence 23455677788999999999999999988776643 3566777777778877 699999976
Q ss_pred HHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCC
Q 044791 527 MKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTP 569 (623)
Q Consensus 527 M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m 569 (623)
..+ +.||...+.... +......+++++|..+++..
T Consensus 419 al~--l~Pd~~~l~~~~------a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 419 AEV--LEPRNINLEVEQ------AWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred HHh--hCCCChHHHHHH------HHHHHHhCCHHHHHHHHHHH
Confidence 655 447765432222 13566777888888776543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-10 Score=136.19 Aligned_cols=228 Identities=11% Similarity=0.020 Sum_probs=183.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHc--CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDK--GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
..+..+..++.. ++.++|+..|.+ ...|+......+..++...|++++|+..|+++... .|+...+..+..++.+
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~ 554 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHH
Confidence 344566666665 899999997754 44576555445555667899999999999998664 4555567778889999
Q ss_pred cCCHHHHHHHHHHhhcCChHHHH---HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044791 325 CGSMTDARRVFDHMADRSMDSWH---LMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHF 401 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~~~~~tyn---~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~ 401 (623)
.|++++|+.+|+...+.+...++ .+...+.+.|++++|+..|++.++. .|+...|..+..++.+.|++++|+..|
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999998876544333 3333445569999999999999975 567889999999999999999999999
Q ss_pred HHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 402 ESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 402 ~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
++.. .+.| +...++.+..++...|+.++|+++|++++...| +...+..+..++...|++++|+..++...++.++
T Consensus 633 ~~AL---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 633 RAAL---ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9988 4456 466778888899999999999999999887777 5578889999999999999999999999999887
Q ss_pred CCC
Q 044791 480 KAD 482 (623)
Q Consensus 480 ~~~ 482 (623)
...
T Consensus 710 ~a~ 712 (987)
T PRK09782 710 QAL 712 (987)
T ss_pred Cch
Confidence 654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.2e-11 Score=127.71 Aligned_cols=230 Identities=13% Similarity=0.035 Sum_probs=188.4
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHc----------C--------------------------C-CCCHHHHHHHHHHHh
Q 044791 246 LPPSVADLARLCQEGKVKEAIELMDK----------G--------------------------V-KADASCFYTLFELCG 288 (623)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~A~~l~~~----------~--------------------------~-~pd~~ty~~Ll~~~~ 288 (623)
..+...+..+|...+++++|+++|+. | . +-.+.+|.++.++|.
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS 432 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence 34555788899999999999999841 1 1 123478999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHH---HHHHHHHHcCChHHHHH
Q 044791 289 NPKWYENAKKVHDYFLQSTIRG-DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWH---LMINGYADNGLGDEGLQ 364 (623)
Q Consensus 289 ~~g~~~~A~~l~~~m~~~g~~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn---~Li~~~~~~g~~eeA~~ 364 (623)
-.++.+.|++.|++.+. +.| ..++|+.+..-+....++|+|...|+.....|...|| -|.-.|.+.++++.|+-
T Consensus 433 LQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred hhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHH
Confidence 99999999999999988 455 6899999999999999999999999999988887555 46777999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCC
Q 044791 365 LFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPF 443 (623)
Q Consensus 365 l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~ 443 (623)
.|++.++.+.. +.+....+...+-+.|+.|+|+.+|++.. .++| |...--..+..+...++.++|+..+++.-++
T Consensus 511 ~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 511 HFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 99999885322 55666677778889999999999999988 4555 4444444567788899999999999993346
Q ss_pred CCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC
Q 044791 444 EPTA-EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKA 481 (623)
Q Consensus 444 ~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~ 481 (623)
.|+. ..|..|...|.+.|+.+.|..-+-.+.+++|++.
T Consensus 587 vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 587 VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 6765 5677777899999999999999999999999875
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.6e-11 Score=127.97 Aligned_cols=270 Identities=17% Similarity=0.163 Sum_probs=199.9
Q ss_pred CCHHHHHHHHHc--CCCCC-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHH-HHHH
Q 044791 260 GKVKEAIELMDK--GVKAD-ASCFYTLFELCGNPKWYENAKKVHDYFLQST--IRGDLVLNNKVIEMYGKCGSMT-DARR 333 (623)
Q Consensus 260 g~~~~A~~l~~~--~~~pd-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~~y~~Li~~y~k~g~~~-~A~~ 333 (623)
-+..+|+.+|.+ ...++ .....-+..+|...+++++|+++|+.+++.. ..-+..+|.+++--+-+.=.+. -|..
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 356777777765 12233 3456678889999999999999999998752 1236889998886554422211 1222
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 044791 334 VFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP 412 (623)
Q Consensus 334 lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p 412 (623)
+.+.+ .....+|-++.++|.-.++.+.|++.|++.... .| .+++|+.+..-+.....+|.|...|+..+ ++
T Consensus 413 Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~-- 484 (638)
T KOG1126|consen 413 LIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GV-- 484 (638)
T ss_pred HHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cC--
Confidence 33222 245669999999999999999999999999874 56 77999999999999999999999998766 33
Q ss_pred Cccchh---hHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCC
Q 044791 413 GTEHYL---GLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPT 488 (623)
Q Consensus 413 ~~~ty~---~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~ 488 (623)
|..+|| .|.-.|.|.++++.|+-.|++++++.| +.+....+...+.+.|+.|+|...+++...|++.+..
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l------ 558 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL------ 558 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch------
Confidence 455555 466779999999999999999889888 5577777888899999999999999999999998764
Q ss_pred CCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhc
Q 044791 489 PPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGL 565 (623)
Q Consensus 489 ~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~l 565 (623)
+ .+- ....+...+++ +||+..|+++++ ++|+..+...++. -.+.+.|..+.|..-
T Consensus 559 --~-~~~---~~~il~~~~~~--------~eal~~LEeLk~--~vP~es~v~~llg------ki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 559 --C-KYH---RASILFSLGRY--------VEALQELEELKE--LVPQESSVFALLG------KIYKRLGNTDLALLH 613 (638)
T ss_pred --h-HHH---HHHHHHhhcch--------HHHHHHHHHHHH--hCcchHHHHHHHH------HHHHHHccchHHHHh
Confidence 1 111 11222233444 699999999876 5788887777664 344555666666543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.8e-09 Score=122.60 Aligned_cols=358 Identities=11% Similarity=0.026 Sum_probs=221.8
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHH-HHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADASCF-YTL 283 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty-~~L 283 (623)
++|+++.|++.|+++.+ ..|... .....++..+...|+.++|+..+++-+.|+...+ ..+
T Consensus 46 r~Gd~~~Al~~L~qaL~--~~P~~~-----------------~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 46 RAGDTAPVLDYLQEESK--AGPLQS-----------------GQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred hCCCHHHHHHHHHHHHh--hCccch-----------------hhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 89999999999998844 222210 1111556666777888888888877666543322 222
Q ss_pred --HHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH--HHHHHHHHHHHcCCh
Q 044791 284 --FELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD--SWHLMINGYADNGLG 359 (623)
Q Consensus 284 --l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~--tyn~Li~~~~~~g~~ 359 (623)
...+...|++++|+++|+++++... -+...+..|+..|...++.++|++.++++...+.. .|-.++..+...++.
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchH
Confidence 4466667888888888888877532 24566666777777778888888888777654443 332222223334455
Q ss_pred HHHHHHHHHHHHcCC-----------------------------------------------------------------
Q 044791 360 DEGLQLFEQMRKLGL----------------------------------------------------------------- 374 (623)
Q Consensus 360 eeA~~l~~eM~~~g~----------------------------------------------------------------- 374 (623)
.+|++.+++|.+...
T Consensus 186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 557777777765311
Q ss_pred ------------------CCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHH
Q 044791 375 ------------------QPNEQ-----TFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 375 ------------------~Pd~~-----ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e 431 (623)
.|... +..-.+-++...|+..++++.|+.|... +...-..+--++.++|...+..+
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~-~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE-GYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc-CCCCCHHHHHHHHHHHHhcCCcH
Confidence 01000 0011234555677788888888888765 54433345667889999999999
Q ss_pred HHHHHHHhhCCCC-------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCC--CCCCCCCchhhHH-HHhh
Q 044791 432 EAQQFIEQKLPFE-------PTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPK--KIPTPPPKKRTAI-SILD 501 (623)
Q Consensus 432 ~A~~lf~~~m~~~-------Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~--~~~~~~p~~~t~~-~li~ 501 (623)
+|+.+|+.++.-. ++......|.-+|...+++++|..+++.+.+-.|..+... ..+...||-..+. .++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 9999999843311 2334467889999999999999999999887544211101 1123456666664 3455
Q ss_pred hcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCC-CCh----hHH
Q 044791 502 GKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPA-RTP----LRI 576 (623)
Q Consensus 502 ~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~-~~~----~~i 576 (623)
.+...|++ .+|++.++++... .|.-.-+... ..++....|+..+|...++... ..| ..+
T Consensus 425 ~~~~~gdl--------~~Ae~~le~l~~~--aP~n~~l~~~------~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~ 488 (822)
T PRK14574 425 SLVALNDL--------PTAQKKLEDLSST--APANQNLRIA------LASIYLARDLPRKAEQELKAVESLAPRSLILER 488 (822)
T ss_pred HHHHcCCH--------HHHHHHHHHHHHh--CCCCHHHHHH------HHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHH
Confidence 57777877 6999999888543 3443322222 2245566677777777765422 111 122
Q ss_pred --HhhHhhhcchhHHHHHHHHHhCC
Q 044791 577 --IKNLRVCGDCHNAIKIMSRIVGR 599 (623)
Q Consensus 577 --~~~l~~~g~~~~a~~l~~~~~~~ 599 (623)
..+...-|+.++|.+++..+.++
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 23345668889998888776433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.5e-12 Score=92.89 Aligned_cols=50 Identities=26% Similarity=0.560 Sum_probs=44.8
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044791 341 RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS 390 (623)
Q Consensus 341 ~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~ 390 (623)
||+++||+||.+|++.|++++|+++|++|++.|+.||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57889999999999999999999999999999999999999999999875
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.5e-12 Score=130.52 Aligned_cols=251 Identities=18% Similarity=0.192 Sum_probs=103.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHcC---C-CCCHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044791 251 ADLARLCQEGKVKEAIELMDKG---V-KADASC-FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~---~-~pd~~t-y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~ 325 (623)
.+-..+.+.|++++|+++++++ . .|+... |..+...+-..++++.|++.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4556677899999999999653 3 344444 445555666788999999999999887544 56677777777 788
Q ss_pred CCHHHHHHHHHHhhc--CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044791 326 GSMTDARRVFDHMAD--RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLG-LQPNEQTFLAVFSACGSADAIEEAFIHFE 402 (623)
Q Consensus 326 g~~~~A~~lf~~m~~--~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g-~~Pd~~ty~~li~a~~~~g~~e~A~~l~~ 402 (623)
++.++|.+++++.-+ .+...+..++..+.+.++++++..++++..... ...+...|..+...+.+.|+.++|+++++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999887643 345577788888999999999999999987533 34577788888888999999999999999
Q ss_pred HHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 403 SMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-FEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 403 ~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
+..+ ..| |....+.++..+...|+.+++.++++.... ...|...|..+..+|...|+.++|...++......+.+
T Consensus 171 ~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 9884 456 466788899999999999998777776222 23355677888899999999999999999988876553
Q ss_pred CCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHH
Q 044791 481 ADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQ 526 (623)
Q Consensus 481 ~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~ 526 (623)
......+.+++...|+. ++|+.+.++
T Consensus 248 ------------~~~~~~~a~~l~~~g~~--------~~A~~~~~~ 273 (280)
T PF13429_consen 248 ------------PLWLLAYADALEQAGRK--------DEALRLRRQ 273 (280)
T ss_dssp ------------HHHHHHHHHHHT----------------------
T ss_pred ------------ccccccccccccccccc--------ccccccccc
Confidence 44666777888888877 588877643
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-12 Score=112.50 Aligned_cols=86 Identities=66% Similarity=1.146 Sum_probs=73.8
Q ss_pred HHHHHHHHCCcccCcceeeeccCHHHH--------HHHHHHHHhHHHHHHhcccCCCCChhHHHhhH-hhhcchhHHHHH
Q 044791 522 KALNQMKESTYVPDTRYVLHDIDQEAK--------EQALLYHSERLAIAYGLISTPARTPLRIIKNL-RVCGDCHNAIKI 592 (623)
Q Consensus 522 ~~~~~M~~~Gi~Pd~~t~~~li~~~~k--------~~~~~~~~g~l~~A~~ll~~m~~~~~~i~~~l-~~~g~~~~a~~l 592 (623)
++..+|...|+.|+.......++...+ ...+..|+++++.|++++.. ++++++ ++|+|||++.|+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~------~vvkn~~RvC~DCH~~~K~ 95 (116)
T PF14432_consen 22 ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT------RVVKNLKRVCGDCHSFIKF 95 (116)
T ss_pred HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce------eEEecCCccchHHHHHHHH
Confidence 566778888888888876666654433 34678899999999999877 788998 999999999999
Q ss_pred HHHHhCCceeeecCCcccccc
Q 044791 593 MSRIVGRELIVRDNKRFHHFK 613 (623)
Q Consensus 593 ~~~~~~~~~~~rd~~~~~~~~ 613 (623)
++++.+|+|++||++|||||+
T Consensus 96 iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 96 ISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHHHHCeEEEEeCCCeeeeCC
Confidence 999999999999999999996
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-09 Score=112.27 Aligned_cols=226 Identities=13% Similarity=0.151 Sum_probs=170.6
Q ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh----cCCh
Q 044791 268 LMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA----DRSM 343 (623)
Q Consensus 268 l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~----~~~~ 343 (623)
++-+-..-+..+|.+||.++|+-..++.|.++|++-.......+..+||.||.+-.-... .+++.+|. .+|+
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCch
Confidence 333444456789999999999999999999999999888788899999999987654333 55666664 5899
Q ss_pred HHHHHHHHHHHHcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhc---CCCC---
Q 044791 344 DSWHLMINGYADNGLGDE----GLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIE-EAFIHFESMKSEF---GISP--- 412 (623)
Q Consensus 344 ~tyn~Li~~~~~~g~~ee----A~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e-~A~~l~~~m~~~~---g~~p--- 412 (623)
.|+|+++.+..+.|+++. |++++.||++.|+.|+..+|..+|.-+++.++.. .|..++.++..+. .++|
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999999999998765 5778999999999999999999999998887763 3444444444221 3333
Q ss_pred -CccchhhHHHHHHhcCCHHHHHHHHHhhCC-------CCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC
Q 044791 413 -GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-------FEPTA---EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKA 481 (623)
Q Consensus 413 -~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-------~~Pd~---~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~ 481 (623)
|..-|..-++.|.+..+.+-|..+-.- ++ +.|+. .-|..+..+.|.....+ ..+..+..|.|+-.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~l-l~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~---~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGL-LKTGDNWKFIGPDQHRNFYYRKFFDLICQMESID---VTLKWYEDLVPSAY 429 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHH-HHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcccee
Confidence 233455667778888888888888665 32 22332 34566777777777776 77888888888887
Q ss_pred CCCCCCCCCCchhhHHHHhhhcCccccc
Q 044791 482 DPKKIPTPPPKKRTAISILDGKSRLVEF 509 (623)
Q Consensus 482 ~~~~~~~~~p~~~t~~~li~~~~~~~~~ 509 (623)
. |+..+-..++.+....+++
T Consensus 430 ~--------p~~~~m~~~lrA~~v~~~~ 449 (625)
T KOG4422|consen 430 F--------PHSQTMIHLLRALDVANRL 449 (625)
T ss_pred c--------CCchhHHHHHHHHhhcCcc
Confidence 7 8888888888887777765
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.8e-11 Score=121.72 Aligned_cols=246 Identities=17% Similarity=0.184 Sum_probs=111.0
Q ss_pred cCCChHHHHHHHHHh-cCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCCC---CHHHH
Q 044791 205 QNQGYPQARNSYQQV-SPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKA---DASCF 280 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~p---d~~ty 280 (623)
+.|++++|++++++. .. ...|+.. ..+. .+...+...+++++|++.+++-+.. +...+
T Consensus 20 ~~~~~~~Al~~L~~~~~~-~~~~~~~-~~~~----------------~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~ 81 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQK-IAPPDDP-EYWR----------------LLADLAWSLGDYDEAIEAYEKLLASDKANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccc-ccccccc-cccc----------------ccccccccccccccccccccccccccccccccc
Confidence 789999999999643 22 0011111 1111 2222345678999999999864433 33457
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-----CChHHHHHHHHHHHH
Q 044791 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD-----RSMDSWHLMINGYAD 355 (623)
Q Consensus 281 ~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~tyn~Li~~~~~ 355 (623)
..++.. ...+++++|.+++.+..+.. ++...+..++..+.+.++++++.++++++.. .+...|..+...+.+
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred cccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 777777 78899999999998776543 4667778899999999999999999998753 355588889999999
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHH
Q 044791 356 NGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQ 434 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~ 434 (623)
.|+.++|+++|++.++. .| |....+.++..+...|+.+++.++++...+. ...|...+..+..+|...|+.++|+
T Consensus 159 ~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al 234 (280)
T PF13429_consen 159 LGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEAL 234 (280)
T ss_dssp CCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred cCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccc
Confidence 99999999999999986 56 4677888999999999999999999988865 2456677889999999999999999
Q ss_pred HHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 435 QFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 435 ~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
.+|++.....| |......+..++...|+.++|..+.+.+.+
T Consensus 235 ~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 235 EYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc
Confidence 99999665556 677778888999999999998888776544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-09 Score=116.37 Aligned_cols=274 Identities=13% Similarity=0.062 Sum_probs=197.3
Q ss_pred cCCHHHHHHHHHcCCCC--CHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHHH
Q 044791 259 EGKVKEAIELMDKGVKA--DASC-FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNN--KVIEMYGKCGSMTDARR 333 (623)
Q Consensus 259 ~g~~~~A~~l~~~~~~p--d~~t-y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~--~Li~~y~k~g~~~~A~~ 333 (623)
.|++++|++++.++... +... |-....+..+.|+++.|.+.+.++.+ ..|+...+- .....+...|+.++|+.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999998754332 2333 33334455889999999999999987 455654333 44678899999999999
Q ss_pred HHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 044791 334 VFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE-------QTFLAVFSACGSADAIEEAFIHFES 403 (623)
Q Consensus 334 lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~-------~ty~~li~a~~~~g~~e~A~~l~~~ 403 (623)
.++++.+. +...+..+...|.+.|++++|.+++..+.+.+...+. .+|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99998764 4558889999999999999999999999988765332 2344444444455566777777777
Q ss_pred HHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCC
Q 044791 404 MKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADP 483 (623)
Q Consensus 404 m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~ 483 (623)
+.+. ...+......+..++...|+.++|.+++++.+...+|.... ++.+.+..++.+++.+..+.+.+..|++.
T Consensus 255 lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~-- 328 (398)
T PRK10747 255 QSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP-- 328 (398)
T ss_pred CCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH--
Confidence 6543 33466777888999999999999999999977655555222 33444456888888888887777665532
Q ss_pred CCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHH
Q 044791 484 KKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAY 563 (623)
Q Consensus 484 ~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~ 563 (623)
....++=..|.+.+++ ++|.+.|+...+. .|+...+..+.. ++.+.|+.++|.
T Consensus 329 ----------~l~l~lgrl~~~~~~~--------~~A~~~le~al~~--~P~~~~~~~La~-------~~~~~g~~~~A~ 381 (398)
T PRK10747 329 ----------LLWSTLGQLLMKHGEW--------QEASLAFRAALKQ--RPDAYDYAWLAD-------ALDRLHKPEEAA 381 (398)
T ss_pred ----------HHHHHHHHHHHHCCCH--------HHHHHHHHHHHhc--CCCHHHHHHHHH-------HHHHcCCHHHHH
Confidence 2455666778888888 6999999877754 588777655543 667777777776
Q ss_pred hccc
Q 044791 564 GLIS 567 (623)
Q Consensus 564 ~ll~ 567 (623)
.+..
T Consensus 382 ~~~~ 385 (398)
T PRK10747 382 AMRR 385 (398)
T ss_pred HHHH
Confidence 5543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.2e-09 Score=102.54 Aligned_cols=196 Identities=19% Similarity=0.090 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGY 353 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~ 353 (623)
...+..+...+...|++++|.+.++++++.. +.+...+..+...|...|++++|++.|++..+. +...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4567778888888889999999888887753 335677888888888889999999988877643 345777888888
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHH
Q 044791 354 ADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 354 ~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e 431 (623)
...|++++|+..|++..+....+ ....+..+..++...|++++|...+++.... .| +...+..+...+...|+++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHH
Confidence 88899999999998888643222 3456667777888889999999999888743 23 3556777888888899999
Q ss_pred HHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 432 EAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 432 ~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
+|.+++++.....| +...+..+...+...|+.+.|....+.+...
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999888444333 4566667777888888988888777776554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.6e-09 Score=112.47 Aligned_cols=216 Identities=13% Similarity=0.019 Sum_probs=147.2
Q ss_pred HHcCCHHHHHHHHHc--CCCCCHHHHH--HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044791 257 CQEGKVKEAIELMDK--GVKADASCFY--TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR 332 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~--~~~pd~~ty~--~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~ 332 (623)
.+.|+++.|.+.|++ ...|+...+. .....+...|+++.|.+.++++.+.. +-+...+..+...|.+.|++++|.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 455555555555543 2233332222 22334455555555555555555543 223455555555555555555555
Q ss_pred HHHHHhhc---------------------------------------------CChHHHHHHHHHHHHcCChHHHHHHHH
Q 044791 333 RVFDHMAD---------------------------------------------RSMDSWHLMINGYADNGLGDEGLQLFE 367 (623)
Q Consensus 333 ~lf~~m~~---------------------------------------------~~~~tyn~Li~~~~~~g~~eeA~~l~~ 367 (623)
+++..+.+ .+......+..++...|+.++|.++++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55554432 234466677888999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 368 QMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 368 eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
+..+. .+|... .++.+....++.+++++..+...++ ..-|...+.++...+.+.|++++|.+.|++++...|+.
T Consensus 288 ~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 288 DGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 99874 444422 2344445669999999999999854 22355667888999999999999999999988889999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 448 EFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 448 ~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
.+|..|...+...|+.++|.++++.-..+...
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999987766543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-09 Score=103.39 Aligned_cols=199 Identities=12% Similarity=0.055 Sum_probs=158.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044791 310 GDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFS 386 (623)
Q Consensus 310 pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~ 386 (623)
.....+..+...|.+.|++++|++.|+++.+. +...+..+...+...|++++|.+.|++..+... .+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 34678888999999999999999999988653 455888899999999999999999999998643 35567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhH
Q 044791 387 ACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-AEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 387 a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~~~~ 465 (623)
.+...|++++|.+.|+++............+..+..++...|++++|...|++++...|+ ...+..+...+...|+.++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999854222223456777888999999999999999996665554 5678888899999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHH
Q 044791 466 EDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKE 529 (623)
Q Consensus 466 A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~ 529 (623)
|...++.+.++.+. +...+..+...+...|+. ++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~--------~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQ------------TAESLWLGIRIARALGDV--------AAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHhhH--------HHHHHHHHHHHh
Confidence 99999998887322 234455566666667766 578877766643
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.18 E-value=5e-11 Score=88.95 Aligned_cols=50 Identities=22% Similarity=0.181 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 275 ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 275 pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
||.++||+||++|++.|++++|+++|++|++.|+.||..||++||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-09 Score=115.36 Aligned_cols=285 Identities=14% Similarity=0.017 Sum_probs=183.4
Q ss_pred HcCCHHHHHHHHHc--CCCCCHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044791 258 QEGKVKEAIELMDK--GVKADAS-CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRV 334 (623)
Q Consensus 258 ~~g~~~~A~~l~~~--~~~pd~~-ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~l 334 (623)
..|+++.|++.+.+ ...|+.. .+-....+....|+.+.|.+.+.++.+..-.+...+.-.....+...|++++|++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 57888888888865 3345543 34445667778899999999998887643222223444457788889999999999
Q ss_pred HHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhhc
Q 044791 335 FDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSAC---GSADAIEEAFIHFESMKSEF 408 (623)
Q Consensus 335 f~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~---~~~g~~e~A~~l~~~m~~~~ 408 (623)
++++.+. +...+..+...+...|++++|.+++..+.+.++.........-+.++ ...+..+++.+.+..+....
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 9988763 44578888888999999999999999999887543322211111111 22233333334444444321
Q ss_pred --CCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCC
Q 044791 409 --GISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEF---WEALRNYARIHGDIDLEDHAEELMVDLDPSKADP 483 (623)
Q Consensus 409 --g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~t---y~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~ 483 (623)
....+...+..+...+...|+.++|++++++.++..||... ...........++.+.+.+.++...+..+++
T Consensus 256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~--- 332 (409)
T TIGR00540 256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK--- 332 (409)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC---
Confidence 11136677788888899999999999999987776676542 1222223334567777777777777665543
Q ss_pred CCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHH
Q 044791 484 KKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAY 563 (623)
Q Consensus 484 ~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~ 563 (623)
|+.....++=..|.+.|++ ++|.++|+.-......||...+.++. .++.+.|+.++|.
T Consensus 333 -------~~~~ll~sLg~l~~~~~~~--------~~A~~~le~a~a~~~~p~~~~~~~La-------~ll~~~g~~~~A~ 390 (409)
T TIGR00540 333 -------PKCCINRALGQLLMKHGEF--------IEAADAFKNVAACKEQLDANDLAMAA-------DAFDQAGDKAEAA 390 (409)
T ss_pred -------hhHHHHHHHHHHHHHcccH--------HHHHHHHHHhHHhhcCCCHHHHHHHH-------HHHHHcCCHHHHH
Confidence 2212333555556777877 68999888655555668777655544 3667777777776
Q ss_pred hccc
Q 044791 564 GLIS 567 (623)
Q Consensus 564 ~ll~ 567 (623)
.+..
T Consensus 391 ~~~~ 394 (409)
T TIGR00540 391 AMRQ 394 (409)
T ss_pred HHHH
Confidence 5543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6e-09 Score=113.71 Aligned_cols=233 Identities=13% Similarity=0.100 Sum_probs=179.6
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHc---------C-CCCCHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHc-----C-
Q 044791 245 VLPPSVADLARLCQEGKVKEAIELMDK---------G-VKADASC-FYTLFELCGNPKWYENAKKVHDYFLQS-----T- 307 (623)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~l~~~---------~-~~pd~~t-y~~Ll~~~~~~g~~~~A~~l~~~m~~~-----g- 307 (623)
...++..|...|...|+++.|+.+++. | ..|...+ .+.+...|...+++++|..+|++++.. |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 445666788899999999999999853 3 2344443 445778899999999999999998764 2
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhc----------CChH-HHHHHHHHHHHcCChHHHHHHHHHHHHc---
Q 044791 308 IRGD-LVLNNKVIEMYGKCGSMTDARRVFDHMAD----------RSMD-SWHLMINGYADNGLGDEGLQLFEQMRKL--- 372 (623)
Q Consensus 308 ~~pd-~~~y~~Li~~y~k~g~~~~A~~lf~~m~~----------~~~~-tyn~Li~~~~~~g~~eeA~~l~~eM~~~--- 372 (623)
..|. ..+++.|..+|++.|++++|...+++..+ +.+. .++.++..|+..+++++|..++.+..+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1222 47788888999999999999988886643 1222 5788888899999999999999987642
Q ss_pred CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----C-CCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 373 GLQPN----EQTFLAVFSACGSADAIEEAFIHFESMKSEF----G-ISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 373 g~~Pd----~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~----g-~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
-+.++ .-+|+.|...|...|++++|+++|+..+... | ... ....++.|...|.+.++.++|.++|+++..
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12333 3589999999999999999999999888643 1 122 245677888899999999999999998322
Q ss_pred -------CCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 443 -------FEPTA-EFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 443 -------~~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
..|++ .+|..|..+|...|+++.|+++.+.+....
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 33444 689999999999999999999888876543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.3e-09 Score=116.93 Aligned_cols=213 Identities=13% Similarity=-0.018 Sum_probs=157.8
Q ss_pred CCHHHHHHHHHcCC--CCCH-HHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 044791 260 GKVKEAIELMDKGV--KADA-SCFYTLFELCG---------NPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS 327 (623)
Q Consensus 260 g~~~~A~~l~~~~~--~pd~-~ty~~Ll~~~~---------~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~ 327 (623)
+.+++|+++|++.+ .|+. ..|..+..++. ..+++++|...+++.++.. +-+...+..+..++...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 44679999998744 4543 34555554433 3355899999999999864 2367888899999999999
Q ss_pred HHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 044791 328 MTDARRVFDHMADRS---MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGSADAIEEAFIHFES 403 (623)
Q Consensus 328 ~~~A~~lf~~m~~~~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~ 403 (623)
+++|+..|++..+.+ ...|..+...|...|++++|+..|++..+.. |+. ..+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999987643 4478889999999999999999999999864 432 2333445556778999999999999
Q ss_pred HHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 404 MKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 404 m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
+.+. ..| +...+..+..+|...|+.++|.+.+++.....|+. ...+.|...|+..| +.|...++.+.+....
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 8753 234 34456778888899999999999999944455554 44555666777777 4677767776665443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-08 Score=103.32 Aligned_cols=352 Identities=12% Similarity=0.095 Sum_probs=222.4
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCC------------chHHHHHHHHHHHcCCHHHHHHHHH--
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQV------------LPPSVADLARLCQEGKVKEAIELMD-- 270 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~-- 270 (623)
..|....|++.|-.... ..|-.++.-..+...+...+.. .-.-..+..++-.....++++.=.+
T Consensus 176 ~~~~~s~A~~sfv~~v~--~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l 253 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVN--RYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERL 253 (559)
T ss_pred hhchHHHHHHHHHHHHh--cCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788888876622 3344333322222222211110 0000122334444445555554332
Q ss_pred --cCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHhhcCChHH
Q 044791 271 --KGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTI--RGDLVLNNKVIEMYGKCGSMT-DARRVFDHMADRSMDS 345 (623)
Q Consensus 271 --~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~~y~~Li~~y~k~g~~~-~A~~lf~~m~~~~~~t 345 (623)
.|+.-+...-+-...+.-...++|.|+.+|+++++... --|..+|+.++-.--.+.++. -|..++ .+-+--..|
T Consensus 254 ~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~idKyR~ET 332 (559)
T KOG1155|consen 254 SSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NIDKYRPET 332 (559)
T ss_pred HhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-HhccCCccc
Confidence 24444444444444455667788888888888887621 126777877765444333322 233332 222334457
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVL 424 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~ 424 (623)
.-++.+-|.-.++.|+|...|++.++.+.. ....|+.|..-|.+..+...|++-++..+ .+.| |-..|-.|..+|
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPRDYRAWYGLGQAY 408 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCchhHHHHhhhhHHH
Confidence 777888889999999999999999986422 45778888899999999999999999988 5555 788999999999
Q ss_pred HhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhc
Q 044791 425 GKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGK 503 (623)
Q Consensus 425 ~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~ 503 (623)
.-.+...-|+-+|+++..++| |...|.+|..+|.+.+++++|++.+......... +...+..+-..+
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt------------e~~~l~~LakLy 476 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT------------EGSALVRLAKLY 476 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc------------chHHHHHHHHHH
Confidence 999999999999999888888 6789999999999999999999999988876543 234667777777
Q ss_pred CccccccCCcccchHHHHHHHHHHH----HCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCCCChhHHHhh
Q 044791 504 SRLVEFRNPTLYRDDEKLKALNQMK----ESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKN 579 (623)
Q Consensus 504 ~~~~~~~~~~~~~~~eal~~~~~M~----~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~~~~~i~~~ 579 (623)
-+.++. ++|..+|++-. ..|..-+.. +.++.--..-+.+.+..++|... ..+.
T Consensus 477 e~l~d~--------~eAa~~yek~v~~~~~eg~~~~~t-----~ka~~fLA~~f~k~~~~~~As~Y----------a~~~ 533 (559)
T KOG1155|consen 477 EELKDL--------NEAAQYYEKYVEVSELEGEIDDET-----IKARLFLAEYFKKMKDFDEASYY----------ATLV 533 (559)
T ss_pred HHHHhH--------HHHHHHHHHHHHHHHhhcccchHH-----HHHHHHHHHHHHhhcchHHHHHH----------HHHH
Confidence 777765 68888774433 334332211 11111111223444555555432 1222
Q ss_pred HhhhcchhHHHHHHHHHhC
Q 044791 580 LRVCGDCHNAIKIMSRIVG 598 (623)
Q Consensus 580 l~~~g~~~~a~~l~~~~~~ 598 (623)
+...-.|++|..++.++..
T Consensus 534 ~~~~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 534 LKGETECEEAKALLREIRK 552 (559)
T ss_pred hcCCchHHHHHHHHHHHHH
Confidence 2223447788888877654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-08 Score=108.61 Aligned_cols=221 Identities=10% Similarity=-0.008 Sum_probs=149.8
Q ss_pred HHHHHHcCCHHHHHHHHHc--CCCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HH--
Q 044791 253 LARLCQEGKVKEAIELMDK--GVKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMY---GK-- 324 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~--~~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y---~k-- 324 (623)
...+...|+++.|++.+++ ...| +...+..+..++...|++++|.+++..+.+.++..........+.++ ..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777754 2334 44566777777777788888888877777776442222111111111 11
Q ss_pred --cCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--H-HHHHHHHHhcCCHHH
Q 044791 325 --CGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQT--F-LAVFSACGSADAIEE 396 (623)
Q Consensus 325 --~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~t--y-~~li~a~~~~g~~e~ 396 (623)
....+...++++...+ .+...+..+...+...|++++|++++++..+. .||... + ..........++.+.
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHH
Confidence 1222333334443332 36678888999999999999999999999986 344432 1 122222344578889
Q ss_pred HHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHH--hhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 044791 397 AFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIE--QKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMV 474 (623)
Q Consensus 397 A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~--~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~ 474 (623)
+++.++...+...-.|+.....+|...+.+.|++++|.+.|+ .++...|+...+..+...+.+.|+.++|.++++...
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998888543333322456688889999999999999999 456678999999999999999999999999988754
Q ss_pred h
Q 044791 475 D 475 (623)
Q Consensus 475 ~ 475 (623)
.
T Consensus 398 ~ 398 (409)
T TIGR00540 398 G 398 (409)
T ss_pred H
Confidence 3
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.3e-08 Score=112.01 Aligned_cols=314 Identities=12% Similarity=0.002 Sum_probs=213.9
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCCHHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKADASCFYT 282 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd~~ty~~ 282 (623)
..|++++|+++|+++.+ ..|+. ...+..++..|...++.++|++.+++ ...|+...+-.
T Consensus 114 ~~gdyd~Aiely~kaL~--~dP~n-----------------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~ 174 (822)
T PRK14574 114 NEKRWDQALALWQSSLK--KDPTN-----------------PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMT 174 (822)
T ss_pred HcCCHHHHHHHHHHHHh--hCCCC-----------------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHH
Confidence 56888888888887733 22221 12223566777888888888888875 33455555544
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----------------------
Q 044791 283 LFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---------------------- 340 (623)
Q Consensus 283 Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---------------------- 340 (623)
++..+...++..+|++.++++++.. +-+...+..++.++.+.|-...|.++..+-..
T Consensus 175 layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a 253 (822)
T PRK14574 175 LSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMA 253 (822)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhc
Confidence 4444444556656888888888863 23566667777777777766666555443220
Q ss_pred -----------------------------CCh-------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044791 341 -----------------------------RSM-------DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV 384 (623)
Q Consensus 341 -----------------------------~~~-------~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~l 384 (623)
.+. ...--.+.++...|++.+|++.|+.|...|...-..+-..+
T Consensus 254 ~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 254 VLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 000 02223566788899999999999999999977667788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcC----CCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC---------------
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFG----ISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP--------------- 445 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g----~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P--------------- 445 (623)
.++|...+..++|+.+|..+....+ ..++......|.-+|...+++++|..+++++....|
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 9999999999999999999976432 122344457889999999999999999999332122
Q ss_pred CH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHH
Q 044791 446 TA-EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKAL 524 (623)
Q Consensus 446 d~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~ 524 (623)
|- ..+..++..+...|++.+|++.++.+....|.+.. ....+-+.+...|.. ++|++++
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~------------l~~~~A~v~~~Rg~p--------~~A~~~~ 473 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQN------------LRIALASIYLARDLP--------RKAEQEL 473 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHhcCCH--------HHHHHHH
Confidence 22 23445666788999999999999999887776543 555666667777776 5999998
Q ss_pred HHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcc
Q 044791 525 NQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLI 566 (623)
Q Consensus 525 ~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll 566 (623)
+..... .|+....... .+......+.+.+|..++
T Consensus 474 k~a~~l--~P~~~~~~~~------~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 474 KAVESL--APRSLILERA------QAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHhhh--CCccHHHHHH------HHHHHHhhhhHHHHHHHH
Confidence 554433 6665432221 112445557777776554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.3e-08 Score=98.16 Aligned_cols=285 Identities=12% Similarity=0.081 Sum_probs=202.6
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc-CCCCCH------
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK-GVKADA------ 277 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-~~~pd~------ 277 (623)
-+.+-++|+++|-+|.+ ..|. +...-.+|.+-|.+.|.+|.|+++-.. .-.||.
T Consensus 47 Ls~Q~dKAvdlF~e~l~--~d~~-----------------t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~ 107 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQ--EDPE-----------------TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRL 107 (389)
T ss_pred hhcCcchHHHHHHHHHh--cCch-----------------hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHH
Confidence 46678999999999944 2222 223334888999999999999999854 223442
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHH--------H
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHL--------M 349 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~--------L 349 (623)
.+.-.|..-|...|=+|.|+.+|..+.+.|.. -....--|+..|-...+|++|+++-+++.+.+...|+. |
T Consensus 108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCEL 186 (389)
T COG2956 108 LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Confidence 34556777888899999999999999886532 34566779999999999999999999887765554444 4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCC
Q 044791 350 INGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGH 429 (623)
Q Consensus 350 i~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~ 429 (623)
...+.-..+++.|..++.+..+..-+ .+..-..+.+.....|+++.|.+.++.+.+. +..--..+...|..+|...|+
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCC
Confidence 44444567899999999999876422 3344446677788999999999999999865 544456677889999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHH-HHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCcccc
Q 044791 430 LFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLED-HAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVE 508 (623)
Q Consensus 430 ~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~-~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~ 508 (623)
.++.+.++.++|+..++...-..|........-.+.|. .+.+.+.. +|+...|.-+|+.-..-.+
T Consensus 265 ~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--------------~Pt~~gf~rl~~~~l~dae 330 (389)
T COG2956 265 PAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRR--------------KPTMRGFHRLMDYHLADAE 330 (389)
T ss_pred HHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--------------CCcHHHHHHHHHhhhcccc
Confidence 99999999998887777666666655444443444333 33333333 3888889888887433321
Q ss_pred ccCCcccchHHHHHHHHHHHHC
Q 044791 509 FRNPTLYRDDEKLKALNQMKES 530 (623)
Q Consensus 509 ~~~~~~~~~~eal~~~~~M~~~ 530 (623)
-+ .-.+.+..+++|...
T Consensus 331 eg-----~~k~sL~~lr~mvge 347 (389)
T COG2956 331 EG-----RAKESLDLLRDMVGE 347 (389)
T ss_pred cc-----chhhhHHHHHHHHHH
Confidence 10 013556666777543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-07 Score=97.67 Aligned_cols=247 Identities=15% Similarity=0.073 Sum_probs=185.3
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHH--HHHHHHcCCHHHHHHHHHc--CC--CCCHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVAD--LARLCQEGKVKEAIELMDK--GV--KADAS 278 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~A~~l~~~--~~--~pd~~ 278 (623)
..|+|.+|+++..+..+.+..| ..+.+ ..+--..|+.+.|-.++.+ .. .++..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p---------------------~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~ 154 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP---------------------VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLA 154 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch---------------------HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHH
Confidence 7899999999999774432222 22233 3344567888888888764 22 33445
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----------------
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR----------------- 341 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~----------------- 341 (623)
.+-+........|++..|..-++++.+.+.. ...+......+|.+.|++.++..++..|.+.
T Consensus 155 v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~ 233 (400)
T COG3071 155 VELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWE 233 (400)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHH
Confidence 5667777788888888888888888876533 5677888888888888888888888887653
Q ss_pred ----------------------------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 044791 342 ----------------------------SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA 393 (623)
Q Consensus 342 ----------------------------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~ 393 (623)
++..-.+++.-+.+.|+.++|.++.++..+++..+.. ..+-.+.+-++
T Consensus 234 glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d 309 (400)
T COG3071 234 GLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGD 309 (400)
T ss_pred HHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCC
Confidence 2223445666677888888888888888887777662 22335566777
Q ss_pred HHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 044791 394 IEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELM 473 (623)
Q Consensus 394 ~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~ 473 (623)
.+.-++..+.-.+.++..| ..+.+|...|.+.+.|.+|.+.|+.++...|+..+|+.+..+|...|+.++|.++.+..
T Consensus 310 ~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 310 PEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred chHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 7777777777776555555 67888999999999999999999998999999999999999999999999999998887
Q ss_pred HhcCCC
Q 044791 474 VDLDPS 479 (623)
Q Consensus 474 ~~m~~~ 479 (623)
..+...
T Consensus 388 L~~~~~ 393 (400)
T COG3071 388 LLLTRQ 393 (400)
T ss_pred HHHhcC
Confidence 655433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.7e-08 Score=111.19 Aligned_cols=207 Identities=10% Similarity=-0.118 Sum_probs=148.3
Q ss_pred cCCHHHHHHHHHcCC--CC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044791 259 EGKVKEAIELMDKGV--KA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVF 335 (623)
Q Consensus 259 ~g~~~~A~~l~~~~~--~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf 335 (623)
.+++++|+..+++.+ .| +..++..+..++...|++++|+..|+++++.+ +.+...+..+..+|...|++++|+..|
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 355899999998744 44 45678888888999999999999999999964 335778889999999999999999999
Q ss_pred HHhhcCChH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 044791 336 DHMADRSMD---SWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGIS 411 (623)
Q Consensus 336 ~~m~~~~~~---tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~ 411 (623)
++..+.+.. .+..++..+...|++++|+..++++.+.. .| +...+..+..++...|+.++|...+.++... .
T Consensus 396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~ 471 (553)
T PRK12370 396 NECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---E 471 (553)
T ss_pred HHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---c
Confidence 998764333 44455556777899999999999988653 24 4455777888888999999999999887642 3
Q ss_pred CC-ccchhhHHHHHHhcCCHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 412 PG-TEHYLGLVGVLGKCGHLFEAQQFIEQKL---PFEPTAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 412 p~-~~ty~~Li~~~~k~g~~e~A~~lf~~~m---~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
|+ ....+.|...|+..| ++|...++... ...+....+..++ |.-.|+.+.+. .++.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~~-~~~~~~~ 534 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAEK-MWNKFKN 534 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHHH-HHHHhhc
Confidence 33 334455556677777 47777776622 2334333444444 44456665443 3354444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-08 Score=99.63 Aligned_cols=229 Identities=17% Similarity=0.128 Sum_probs=192.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHcC--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 044791 250 VADLARLCQEGKVKEAIELMDKG--VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS 327 (623)
Q Consensus 250 ~~li~~~~~~g~~~~A~~l~~~~--~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~ 327 (623)
+-|..+|.+.|.+.+|+..|+.. -.|-+.||-.|-++|.+....+.|+.++.+-++. ++-|+....-+...+-..++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 47788999999999999999764 3467789999999999999999999999998875 34344444557778888899
Q ss_pred HHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044791 328 MTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESM 404 (623)
Q Consensus 328 ~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m 404 (623)
.++|.++|++..+. ++.+..++..+|.-.++.|-|+..|++++..|+. +...|+.+.-+|.-.+.+|-++-.|++.
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 99999999988763 5667888888999999999999999999999986 7788999999999999999999999988
Q ss_pred HhhcCCCCC--ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC
Q 044791 405 KSEFGISPG--TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKA 481 (623)
Q Consensus 405 ~~~~g~~p~--~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~ 481 (623)
... --.|+ ..+|-.|....+..|++.-|.+.|+.++...+ +...+|.|.-.-.+.|+++.|...+.......|.-.
T Consensus 385 lst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 385 LST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred Hhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 854 33343 45677888888999999999999998665444 457899998888999999999999998887766543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.1e-08 Score=107.27 Aligned_cols=236 Identities=13% Similarity=0.101 Sum_probs=174.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHhhc-------C--
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQS-----TI-RGDLVL-NNKVIEMYGKCGSMTDARRVFDHMAD-------R-- 341 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-----g~-~pd~~~-y~~Li~~y~k~g~~~~A~~lf~~m~~-------~-- 341 (623)
.++..|...|...|+++.|+.+++..++. |. .+.+.+ .+.+...|...+++++|..+|+++.. .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 56777999999999999999999988764 21 233333 34477889999999999999998863 1
Q ss_pred --ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC--C
Q 044791 342 --SMDSWHLMINGYADNGLGDEGLQLFEQMRKL-----GL-QPNE-QTFLAVFSACGSADAIEEAFIHFESMKSEFG--I 410 (623)
Q Consensus 342 --~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~-----g~-~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g--~ 410 (623)
-..+++.|..+|.+.|++++|..++++..+. |. .+.+ .-++.++..|+..+++++|..++....+-+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1238999999999999999999988887632 22 2333 2456677789999999999999887665332 1
Q ss_pred CC----CccchhhHHHHHHhcCCHHHHHHHHHhhCC--------CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 411 SP----GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP--------FEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 411 ~p----~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~--------~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
.+ -..+|+.|...|.+.|++++|+++|++++. .... ...++.|..+|.+.+..++|.++++....+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 12 246899999999999999999999999442 1222 3567788889999999888888777765544
Q ss_pred CCCCCCCCCCCCCC-chhhHHHHhhhcCccccccCCcccchHHHHHHHHHH
Q 044791 478 PSKADPKKIPTPPP-KKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQM 527 (623)
Q Consensus 478 ~~~~~~~~~~~~~p-~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M 527 (623)
.-+.++ .| ...+|..|...|.+.|++ |+|+++....
T Consensus 440 -~~~g~~-----~~~~~~~~~nL~~~Y~~~g~~--------e~a~~~~~~~ 476 (508)
T KOG1840|consen 440 -KLCGPD-----HPDVTYTYLNLAALYRAQGNY--------EAAEELEEKV 476 (508)
T ss_pred -HHhCCC-----CCchHHHHHHHHHHHHHcccH--------HHHHHHHHHH
Confidence 222211 12 256788999999999998 6888887444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-07 Score=103.74 Aligned_cols=282 Identities=16% Similarity=0.141 Sum_probs=185.3
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHH--cCCCC-CHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMD--KGVKA-DASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~--~~~~p-d~~ty~ 281 (623)
-.|++++|.+++.++.+ ..|.. ...|.+|...|-..|+.++++..+- ..+.| |...|.
T Consensus 151 arg~~eeA~~i~~EvIk--qdp~~-----------------~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~ 211 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIK--QDPRN-----------------PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWK 211 (895)
T ss_pred HhCCHHHHHHHHHHHHH--hCccc-----------------hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHH
Confidence 45999999999999855 33332 2345577778888888888887652 33433 456677
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--------------------
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR-------------------- 341 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-------------------- 341 (623)
.+.....+.|+++.|.-+|.+.++.. +++...+---+..|-+.|+...|++-|.+|...
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 77777777777888877777777753 234444444556666677777666666665432
Q ss_pred ------------------------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---------------------
Q 044791 342 ------------------------SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP--------------------- 376 (623)
Q Consensus 342 ------------------------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P--------------------- 376 (623)
+...+++++..|.+...++.|.....++.....++
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 11256667777777777777777666665521112
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC--CCccchhhHHHHHHhcCCHHHHHHHHHhhCC--CCCC
Q 044791 377 ------NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGIS--PGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP--FEPT 446 (623)
Q Consensus 377 ------d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~--p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~--~~Pd 446 (623)
+...+ -++-++.+....+....+....... .+. -++..|.-+.++|...|++.+|+.+|..+.. ..-+
T Consensus 371 ~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 371 GKELSYDLRVI-RLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred CCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 11111 1222333333333333333333332 433 3567788899999999999999999999333 2235
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHH
Q 044791 447 AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQ 526 (623)
Q Consensus 447 ~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~ 526 (623)
...|--+..+|...|..+.|.+.+++.....|.+.. ..++..+ .+-+.|.+ |+|++.+..
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D---------~Ri~Las---l~~~~g~~--------EkalEtL~~ 508 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD---------ARITLAS---LYQQLGNH--------EKALETLEQ 508 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh---------hhhhHHH---HHHhcCCH--------HHHHHHHhc
Confidence 678999999999999999999999999999988765 1334444 44556666 689998877
Q ss_pred HH
Q 044791 527 MK 528 (623)
Q Consensus 527 M~ 528 (623)
|.
T Consensus 509 ~~ 510 (895)
T KOG2076|consen 509 II 510 (895)
T ss_pred cc
Confidence 64
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-07 Score=95.62 Aligned_cols=183 Identities=15% Similarity=0.148 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-CChH------HHHHHHHHHHHcCChHHHHH
Q 044791 292 WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD-RSMD------SWHLMINGYADNGLGDEGLQ 364 (623)
Q Consensus 292 ~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~-~~~~------tyn~Li~~~~~~g~~eeA~~ 364 (623)
+.++|.++|-+|.+.. +-+..+.-+|.+.|-+.|.+|.|+++...+.+ +|.. ..--|..-|...|-+|.|+.
T Consensus 50 Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3445555555554421 11233334455555555555555555544332 2221 22333344444555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----ccchhhHHHHHHhcCCHHHHHHHHHhh
Q 044791 365 LFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG----TEHYLGLVGVLGKCGHLFEAQQFIEQK 440 (623)
Q Consensus 365 l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~----~~ty~~Li~~~~k~g~~e~A~~lf~~~ 440 (623)
+|..+.+.|. .-....-.|+..|-...++++|+++-+++.+- +-.+. ..-|.-|...+.-..++++|..++.++
T Consensus 129 ~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 129 IFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 5555444321 12223334444455555555555554444422 11110 011222222222334455555555554
Q ss_pred CCCCCCHHHHHH-HHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 441 LPFEPTAEFWEA-LRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 441 m~~~Pd~~ty~~-Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
+...|..+--++ |.+.+...|++..|.++++.+.+-+
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn 244 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN 244 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC
Confidence 443333322222 2234444555555555555554443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-06 Score=96.62 Aligned_cols=289 Identities=14% Similarity=0.106 Sum_probs=195.1
Q ss_pred HHHHHHcCCHHHHHHHHHc--CCCCCHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----
Q 044791 253 LARLCQEGKVKEAIELMDK--GVKADAS-CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC---- 325 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~--~~~pd~~-ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~---- 325 (623)
...+...|++++|++.+++ ...+|.. .+......+.+.|+.++|..+|..+++.+. .|..-|..|..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcccc
Confidence 4557889999999999964 4556654 566788899999999999999999999763 2556666666666333
Q ss_pred -CCHHHHHHHHHHhhcCChH--HHHHHHHHHHHcCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044791 326 -GSMTDARRVFDHMADRSMD--SWHLMINGYADNGLGD-EGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHF 401 (623)
Q Consensus 326 -g~~~~A~~lf~~m~~~~~~--tyn~Li~~~~~~g~~e-eA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~ 401 (623)
...+...++|+++.+.-.. +..-+.-.+....++. .+...+..+..+||. .+|+.|-..|....+.+-...++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 2578888899988654322 2222222222222333 455567778888875 36666766677666666666777
Q ss_pred HHHHhhcC-------------CCCCc--cchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChhH
Q 044791 402 ESMKSEFG-------------ISPGT--EHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWEALRNYARIHGDIDL 465 (623)
Q Consensus 402 ~~m~~~~g-------------~~p~~--~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~~Li~a~~~~g~~~~ 465 (623)
..+..... -.|.. .++..|...|-..|++++|++++++++...|+. ..|.+-.+.|...|++++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 66654311 11232 244556677889999999999999989989975 678888889999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCH
Q 044791 466 EDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQ 545 (623)
Q Consensus 466 A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~ 545 (623)
|.++++..++|+... ...=+.....+.|.|++ ++|.+.+......+. +.......+..
T Consensus 247 Aa~~~~~Ar~LD~~D------------RyiNsK~aKy~LRa~~~--------e~A~~~~~~Ftr~~~--~~~~~L~~mQc 304 (517)
T PF12569_consen 247 AAEAMDEARELDLAD------------RYINSKCAKYLLRAGRI--------EEAEKTASLFTREDV--DPLSNLNDMQC 304 (517)
T ss_pred HHHHHHHHHhCChhh------------HHHHHHHHHHHHHCCCH--------HHHHHHHHhhcCCCC--CcccCHHHHHH
Confidence 999999999998754 33444555556667766 799888876666555 22222222211
Q ss_pred ---HHHHHHHHHHHhHHHHHHhccc
Q 044791 546 ---EAKEQALLYHSERLAIAYGLIS 567 (623)
Q Consensus 546 ---~~k~~~~~~~~g~l~~A~~ll~ 567 (623)
....+..+.+.|++..|+..+.
T Consensus 305 ~Wf~~e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 305 MWFETECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1233345667777777776553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.5e-08 Score=102.14 Aligned_cols=88 Identities=14% Similarity=0.107 Sum_probs=60.1
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCCHHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKADASCFYT 282 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd~~ty~~ 282 (623)
+...|.+|++.|+.... .+|..-..+ .+...+++...|.+.|.+++|+.-|+. ...|+..+--.
T Consensus 249 kkr~fskaikfyrmald--qvpsink~~------------rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~n 314 (840)
T KOG2003|consen 249 KKREFSKAIKFYRMALD--QVPSINKDM------------RIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALN 314 (840)
T ss_pred ehhhHHHHHHHHHHHHh--hccccchhh------------HHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhh
Confidence 57889999999884433 444422211 234555666778899999999999975 44577665444
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHc
Q 044791 283 LFELCGNPKWYENAKKVHDYFLQS 306 (623)
Q Consensus 283 Ll~~~~~~g~~~~A~~l~~~m~~~ 306 (623)
|+-++.-.|+-++..+.|.+|+..
T Consensus 315 l~i~~f~i~d~ekmkeaf~kli~i 338 (840)
T KOG2003|consen 315 LIICAFAIGDAEKMKEAFQKLIDI 338 (840)
T ss_pred hhhhheecCcHHHHHHHHHHHhcC
Confidence 444445568888888889888865
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.9e-08 Score=108.50 Aligned_cols=239 Identities=13% Similarity=0.081 Sum_probs=158.6
Q ss_pred HcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHH
Q 044791 270 DKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLM 349 (623)
Q Consensus 270 ~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~L 349 (623)
..|+.|+.+||..||..||..|+++.|- +|.-|.-.....+..+++.++.+....++.+.|. ++...+|..|
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~L 89 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNL 89 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHH
Confidence 3589999999999999999999999998 8888877767777889999999999999988776 6777899999
Q ss_pred HHHHHHcCChHH---HHHHHHHHH----HcCCCCCHHHHHHHHHHH--------------HhcCCHHHHHHHHHHHHhhc
Q 044791 350 INGYADNGLGDE---GLQLFEQMR----KLGLQPNEQTFLAVFSAC--------------GSADAIEEAFIHFESMKSEF 408 (623)
Q Consensus 350 i~~~~~~g~~ee---A~~l~~eM~----~~g~~Pd~~ty~~li~a~--------------~~~g~~e~A~~l~~~m~~~~ 408 (623)
..+|...||+.. +.+.++... ..|+.--..-|-..|++| ...|-++.+++++..|
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~---- 165 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV---- 165 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC----
Confidence 999999999655 222222221 223332222222222222 2223333333333222
Q ss_pred CCCCCccchhhH---HHHHHh-cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCC
Q 044791 409 GISPGTEHYLGL---VGVLGK-CGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPK 484 (623)
Q Consensus 409 g~~p~~~ty~~L---i~~~~k-~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~ 484 (623)
|...-++.. +.-... ...+++-..+... ..-.++..+|.+++.+-...|+++.|..++..|++ .|..
T Consensus 166 ---Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cks-l~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke---~gfp-- 236 (1088)
T KOG4318|consen 166 ---PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKS-LVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE---KGFP-- 236 (1088)
T ss_pred ---CcccccchHHHHHHHhccCCchHHHHHHHHHH-hhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH---cCCC--
Confidence 322222221 222222 2345555555555 33369999999999999999999966666555555 5554
Q ss_pred CCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHH
Q 044791 485 KIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQE 546 (623)
Q Consensus 485 ~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~ 546 (623)
.+..-|..+|.+ .+.. .-+..+++.|.+.|+.|+..|+...+..+
T Consensus 237 ------ir~HyFwpLl~g---~~~~--------q~~e~vlrgmqe~gv~p~seT~adyvip~ 281 (1088)
T KOG4318|consen 237 ------IRAHYFWPLLLG---INAA--------QVFEFVLRGMQEKGVQPGSETQADYVIPQ 281 (1088)
T ss_pred ------cccccchhhhhc---Cccc--------hHHHHHHHHHHHhcCCCCcchhHHHHHhh
Confidence 666677788877 3332 24455668999999999999998877543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-06 Score=97.88 Aligned_cols=286 Identities=13% Similarity=0.146 Sum_probs=170.6
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADASCFYTLF 284 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll 284 (623)
..|+|-.|+.+|....+ ..|........ .+..+|.+.|+.+.|+..|.+.+..|+...++++
T Consensus 176 nkkdY~~al~yyk~al~--inp~~~aD~rI----------------gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv 237 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALR--INPACKADVRI----------------GIGHCFWKLGMSEKALLAFERALQLDPTCVSALV 237 (1018)
T ss_pred ccccHHHHHHHHHHHHh--cCcccCCCccc----------------hhhhHHHhccchhhHHHHHHHHHhcChhhHHHHH
Confidence 56777777777776533 22222221111 2334566788888888888765544443333222
Q ss_pred HH------HhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCh------HHHHHHHHH
Q 044791 285 EL------CGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSM------DSWHLMING 352 (623)
Q Consensus 285 ~~------~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~------~tyn~Li~~ 352 (623)
.. +-..-.+..|+.++...-... .-+.++.+.|.+.|.-.|++..|..+.+.+..... .+|--+..+
T Consensus 238 ~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs 316 (1018)
T KOG2002|consen 238 ALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRS 316 (1018)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 21 112234555666665555442 22566777788888888888888888887765431 267778888
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcC--
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQPNEQ--TFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCG-- 428 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~Pd~~--ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g-- 428 (623)
|-..|++++|...|.+.... .+|.. .+.-|...+.+.|+++.+...|+.+.+. ..-+..+...|...|+..+
T Consensus 317 ~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 317 YHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhh
Confidence 88888888888888776654 44443 3444566678888888888888887743 2224555555555565554
Q ss_pred --CHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh-cCCCCCCCCCCCCCCCchhhHHHHhhhcC
Q 044791 429 --HLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVD-LDPSKADPKKIPTPPPKKRTAISILDGKS 504 (623)
Q Consensus 429 --~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~-m~~~~~~~~~~~~~~p~~~t~~~li~~~~ 504 (623)
..++|..++.+..+..| |...|-.+...|- .++...+..++....+ |...+.. +-....|.+-....
T Consensus 393 ~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~--------ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQ--------IPPEVLNNVASLHF 463 (1018)
T ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCC--------CCHHHHHhHHHHHH
Confidence 56777777777555444 4456655555444 4454444555555442 2222221 33556666666667
Q ss_pred ccccccCCcccchHHHHHHHHHHHHC
Q 044791 505 RLVEFRNPTLYRDDEKLKALNQMKES 530 (623)
Q Consensus 505 ~~~~~~~~~~~~~~eal~~~~~M~~~ 530 (623)
+.|.+ ++|.+.|+.-+..
T Consensus 464 ~~g~~--------~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 464 RLGNI--------EKALEHFKSALGK 481 (1018)
T ss_pred HhcCh--------HHHHHHHHHHhhh
Confidence 77766 5888888555433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.8e-07 Score=93.26 Aligned_cols=233 Identities=12% Similarity=0.027 Sum_probs=166.8
Q ss_pred CCHHHHHHHHHcCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 260 GKVKEAIELMDKGVKADA---SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFD 336 (623)
Q Consensus 260 g~~~~A~~l~~~~~~pd~---~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~ 336 (623)
+++..|-..-+..+..|. .....-.+.....|++++|.+.|++.+...-.-....|| +.-.+-+.|++++|+..|-
T Consensus 470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~ 548 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFL 548 (840)
T ss_pred cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHH
Confidence 455566555444333332 222223334455789999999999997753322223333 4456778899999999997
Q ss_pred Hhh---cCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC
Q 044791 337 HMA---DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG 413 (623)
Q Consensus 337 ~m~---~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~ 413 (623)
++. ..++...--+.+.|-...+...|++++-..... +.-|......|.+.|-+.|+-..|...+-+--+ =+..+
T Consensus 549 klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~n 625 (840)
T KOG2003|consen 549 KLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCN 625 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcc
Confidence 764 356666777778888889999999998776553 444678888999999999999999988765442 23447
Q ss_pred ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCc
Q 044791 414 TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNY-ARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPK 492 (623)
Q Consensus 414 ~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a-~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~ 492 (623)
+.+...|..-|....-+++|+.+|+++--+.|+.+-|..||.. +.+.|++..|.+.++.+....|.+
T Consensus 626 ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped------------ 693 (840)
T KOG2003|consen 626 IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED------------ 693 (840)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc------------
Confidence 8888888888999999999999999944478999999999885 567999997777777766655443
Q ss_pred hhhHHHHhhhcCcccc
Q 044791 493 KRTAISILDGKSRLVE 508 (623)
Q Consensus 493 ~~t~~~li~~~~~~~~ 508 (623)
.....-|+..|...|.
T Consensus 694 ldclkflvri~~dlgl 709 (840)
T KOG2003|consen 694 LDCLKFLVRIAGDLGL 709 (840)
T ss_pred hHHHHHHHHHhccccc
Confidence 3344556666777765
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-07 Score=98.24 Aligned_cols=210 Identities=15% Similarity=0.147 Sum_probs=133.9
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCH---HHHHHHHH-cCCCCCHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKV---KEAIELMD-KGVKADASCF 280 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~l~~-~~~~pd~~ty 280 (623)
.+.++|+|+.+|+.+.+ ..|=.++.+ .++.+++ |++..+- -.|..++. ...+| .|+
T Consensus 274 ~~rDfD~a~s~Feei~k--nDPYRl~dm--------------dlySN~L--Yv~~~~skLs~LA~~v~~idKyR~--ETC 333 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRK--NDPYRLDDM--------------DLYSNVL--YVKNDKSKLSYLAQNVSNIDKYRP--ETC 333 (559)
T ss_pred hhhhHHHHHHHHHHHHh--cCCCcchhH--------------HHHhHHH--HHHhhhHHHHHHHHHHHHhccCCc--cce
Confidence 57899999999999966 344433332 2222222 2222211 12333332 23333 356
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcC
Q 044791 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNG 357 (623)
Q Consensus 281 ~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g 357 (623)
.++.+-|+-.++-++|...|++.++.+. .....|+.+..-|....+...|++-++...+ +|-..|-.|..+|.-.+
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc
Confidence 6666667777777777777777777542 2456677777777777777777777776654 34457777777777777
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHH
Q 044791 358 LGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQF 436 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~l 436 (623)
...=|+-.|++..+. +| |...|.+|..+|.+.++.++|++.|.+...- -..+...|..|.+.|-+.++.++|..+
T Consensus 413 Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 413 MHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred chHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 777777777776663 44 5677777777777777777777777776642 222456677777777777777777777
Q ss_pred HHh
Q 044791 437 IEQ 439 (623)
Q Consensus 437 f~~ 439 (623)
|++
T Consensus 489 yek 491 (559)
T KOG1155|consen 489 YEK 491 (559)
T ss_pred HHH
Confidence 766
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-06 Score=91.20 Aligned_cols=194 Identities=12% Similarity=-0.028 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYA 354 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~ 354 (623)
..|..+..++.+.|+.++|...|++.++.. +.+...|+.+...|...|++++|+..|++..+. +..+|..+..++.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 457777778888888888888888888853 235788888888888899999999888888653 3457888888888
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHH--
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFE-- 432 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~-- 432 (623)
..|++++|++.|++..+. .|+..........+...++.++|...|++... ...++... ..++. ...|++.+
T Consensus 144 ~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~-~~~~~--~~lg~~~~~~ 216 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWG-WNIVE--FYLGKISEET 216 (296)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccH-HHHHH--HHccCCCHHH
Confidence 889999999988888875 44433222222233456788888888876553 23333222 12222 33444433
Q ss_pred HHHHHHhhCCC----CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 433 AQQFIEQKLPF----EP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 433 A~~lf~~~m~~----~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
+.+.+.+.... .| ....|..|...+...|+.++|...+++..+..+.
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 33333321221 11 2357888888888899999888888888876643
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-07 Score=97.76 Aligned_cols=223 Identities=14% Similarity=0.162 Sum_probs=158.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCH
Q 044791 250 VADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRG-DLVLNNKVIEMYGKCGSM 328 (623)
Q Consensus 250 ~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~y~~Li~~y~k~g~~ 328 (623)
.-+..++...|+.+.++.-...+-.|.......+...+....+-+.++.-+++.+..+... +..+.-....+|...|++
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~ 118 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDY 118 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH
Confidence 3567889999999988877766668888777777766665556666666555544433332 333333334566778999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 044791 329 TDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS----ADAIEEAFIHFESM 404 (623)
Q Consensus 329 ~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~----~g~~e~A~~l~~~m 404 (623)
++|+++++.. .+.......+..|.+.+++|.|.+.|+.|.+. ..| .+...|..++.. .+.+.+|..+|+++
T Consensus 119 ~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El 193 (290)
T PF04733_consen 119 EEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEEL 193 (290)
T ss_dssp HHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 9999998765 56778888999999999999999999999875 334 444445554433 34799999999999
Q ss_pred HhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCh-hHHHHHHHHHHhcCCC
Q 044791 405 KSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDI-DLEDHAEELMVDLDPS 479 (623)
Q Consensus 405 ~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~-~~A~~~~~~~~~m~~~ 479 (623)
.. ...++..+.+.+..++...|++++|++++.+++...| +..+...+|.+....|+. +.+.+.+..+....+.
T Consensus 194 ~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 194 SD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred Hh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 85 4456778888899999999999999999999887666 446777788887888887 6566777777776554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.5e-06 Score=93.68 Aligned_cols=183 Identities=13% Similarity=0.089 Sum_probs=99.4
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCCHHH--H
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKADASC--F 280 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd~~t--y 280 (623)
..|+|..+..+...+...-....... .+|.-+..+|...|++++|..+|-. +..+|.++ +
T Consensus 282 fK~dy~~v~~la~~ai~~t~~~~~~a----------------es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 282 FKKDYERVWHLAEHAIKNTENKSIKA----------------ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred hcccHHHHHHHHHHHHHhhhhhHHHH----------------HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 56777777777776633221111111 1233566777777777777777743 44444433 3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHhhcCCh---HHHHHHHHHH
Q 044791 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG----SMTDARRVFDHMADRSM---DSWHLMINGY 353 (623)
Q Consensus 281 ~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g----~~~~A~~lf~~m~~~~~---~tyn~Li~~~ 353 (623)
--|...+.+.|+++.+...|+.+.+. .+-+..+..+|...|+..+ ..++|..++.+..+... ..|-.+...|
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34666777777777777777777664 2334566666666666554 45666666666554432 2343333333
Q ss_pred HHcCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 354 ADNGLGDEGLQLFEQM----RKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 354 ~~~g~~eeA~~l~~eM----~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
-. ++...++.+|... ...|-.+-....|.+.......|.+++|...|....
T Consensus 425 e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 425 EQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred Hh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 22 2333334444332 233333455555666655666666666666665555
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.9e-06 Score=87.10 Aligned_cols=318 Identities=14% Similarity=0.096 Sum_probs=193.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHc--CCCCC-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC
Q 044791 251 ADLARLCQEGKVKEAIELMDK--GVKAD-ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD-LVLNNKVIEMYGKCG 326 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~--~~~pd-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~y~~Li~~y~k~g 326 (623)
+..+-|.+.|++++|++.|.. .+.|| .+-|.....+|...|+|+++.+.-.+.++ +.|+ +..+.--..++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhc
Confidence 445568899999999999976 55688 67788888889999999998888877776 4455 334444445555555
Q ss_pred CHHHHH----------------------HHHHHh---------hc-C---------------------------------
Q 044791 327 SMTDAR----------------------RVFDHM---------AD-R--------------------------------- 341 (623)
Q Consensus 327 ~~~~A~----------------------~lf~~m---------~~-~--------------------------------- 341 (623)
++++|+ +++++. .+ +
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 555543 222211 10 0
Q ss_pred --------------------------------------C---------hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 044791 342 --------------------------------------S---------MDSWHLMINGYADNGLGDEGLQLFEQMRKLGL 374 (623)
Q Consensus 342 --------------------------------------~---------~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~ 374 (623)
+ +.+.......+.-.|+.-.|...|++..+...
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~ 357 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP 357 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc
Confidence 0 00011111113334556666666666665433
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHH
Q 044791 375 QPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEA 452 (623)
Q Consensus 375 ~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~ 452 (623)
.++. .|.-+..+|....+-++.+..|.... .+.| +..+|-.-..++.-.+++++|..=|++++.+.| ++..|--
T Consensus 358 ~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~---~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ 433 (606)
T KOG0547|consen 358 AFNS-LYIKRAAAYADENQSEKMWKDFNKAE---DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ 433 (606)
T ss_pred ccch-HHHHHHHHHhhhhccHHHHHHHHHHH---hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence 3222 26666667788888888888887776 5555 566777777778888888888888888777777 4456666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCc
Q 044791 453 LRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTY 532 (623)
Q Consensus 453 Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi 532 (623)
+--+..+.+.+++++..++...+..|.-. ..|+..-..+...++| +.|++.|+.-++.
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkkFP~~~------------Evy~~fAeiLtDqqqF--------d~A~k~YD~ai~L-- 491 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKKFPNCP------------EVYNLFAEILTDQQQF--------DKAVKQYDKAIEL-- 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCc------------hHHHHHHHHHhhHHhH--------HHHHHHHHHHHhh--
Confidence 66666677888888888888777666543 3566666777778888 6888888554432
Q ss_pred ccCcce-eeeccCHHHHHHHHHHHHhHHHHHHhcccCC----CCChhHH---HhhHhhhcchhHHHHHHHHH
Q 044791 533 VPDTRY-VLHDIDQEAKEQALLYHSERLAIAYGLISTP----ARTPLRI---IKNLRVCGDCHNAIKIMSRI 596 (623)
Q Consensus 533 ~Pd~~t-~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m----~~~~~~i---~~~l~~~g~~~~a~~l~~~~ 596 (623)
.|+... +....--..|+..++-=.+++..|..++..- ++...+. -.....-|+.++|+++|.+.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222111 1000000112222222236777777776542 2211221 12235557788888877764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2e-06 Score=89.29 Aligned_cols=226 Identities=11% Similarity=-0.062 Sum_probs=156.2
Q ss_pred CCChHHHHHHHHHhcCCC-CCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCC-CHHHHH
Q 044791 206 NQGYPQARNSYQQVSPGH-QIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKA-DASCFY 281 (623)
Q Consensus 206 ~g~~~~A~~lf~~m~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~p-d~~ty~ 281 (623)
.++.+.++.-+.++.... ..|+ .....+..+...|.+.|++++|+..|++ .+.| +...|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~----------------~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~ 102 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDE----------------ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYN 102 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcH----------------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 466788888888773211 0110 1123455677788999999999999976 3445 457899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH-HHHHH-HHHHHHcCC
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRG-DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD-SWHLM-INGYADNGL 358 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~-tyn~L-i~~~~~~g~ 358 (623)
.+...+...|++++|++.|++.++. .| +..+|..+..++...|++++|++.|+...+.+.. .+..+ ...+...++
T Consensus 103 ~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~ 180 (296)
T PRK11189 103 YLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLD 180 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 9999999999999999999999985 34 4788899999999999999999999988764332 12222 223445678
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-----CccchhhHHHHHHhcCCHHHH
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-----GTEHYLGLVGVLGKCGHLFEA 433 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-----~~~ty~~Li~~~~k~g~~e~A 433 (623)
+++|+..|.+.... ..++...+ . .+....|+++++ +.++.+.+.....+ ....|..|...|.+.|+.++|
T Consensus 181 ~~~A~~~l~~~~~~-~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A 255 (296)
T PRK11189 181 PKQAKENLKQRYEK-LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEA 255 (296)
T ss_pred HHHHHHHHHHHHhh-CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 99999999876643 23333222 2 222335665544 35555553222111 235788999999999999999
Q ss_pred HHHHHhhCCCCC-CHHHHHHHH
Q 044791 434 QQFIEQKLPFEP-TAEFWEALR 454 (623)
Q Consensus 434 ~~lf~~~m~~~P-d~~ty~~Li 454 (623)
+..|++++...| |.+-+...+
T Consensus 256 ~~~~~~Al~~~~~~~~e~~~~~ 277 (296)
T PRK11189 256 AALFKLALANNVYNFVEHRYAL 277 (296)
T ss_pred HHHHHHHHHhCCchHHHHHHHH
Confidence 999999777664 655555433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-06 Score=88.04 Aligned_cols=237 Identities=14% Similarity=0.037 Sum_probs=187.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--CChHHH-HHH
Q 044791 273 VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD--RSMDSW-HLM 349 (623)
Q Consensus 273 ~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--~~~~ty-n~L 349 (623)
...|-..-+-+.++|.+.|.+.+|++.++..++. .|-+.||-.|-.+|.+....+.|+.+|.+-.+ +..+|| .-+
T Consensus 219 ~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ 296 (478)
T KOG1129|consen 219 CTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQ 296 (478)
T ss_pred chHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhh
Confidence 3344455567899999999999999999998885 45667888899999999999999999998875 344454 445
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCC
Q 044791 350 INGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGH 429 (623)
Q Consensus 350 i~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~ 429 (623)
...+-..++.++|.++|++..+.. ..++....++...|.-.++.|.|+++|.++..- |+. +...|+.+.-+|.-.+.
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcc
Confidence 667888899999999999998763 336667777888888999999999999999965 765 66788898888888999
Q ss_pred HHHHHHHHHhhCC--CCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCc
Q 044791 430 LFEAQQFIEQKLP--FEPTA--EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSR 505 (623)
Q Consensus 430 ~e~A~~lf~~~m~--~~Pd~--~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~ 505 (623)
+|-++..|++++. -.|+. ..|..|-......||+..|.+.+++...-++.+ ...++.|----.+
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h------------~ealnNLavL~~r 441 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH------------GEALNNLAVLAAR 441 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch------------HHHHHhHHHHHhh
Confidence 9999999999443 23543 678888888889999999999999998876665 3477777666677
Q ss_pred cccccCCcccchHHHHHHHHHHHHCCcccCc
Q 044791 506 LVEFRNPTLYRDDEKLKALNQMKESTYVPDT 536 (623)
Q Consensus 506 ~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~ 536 (623)
.|+. ++|..++..-+ .+.|+.
T Consensus 442 ~G~i--------~~Arsll~~A~--s~~P~m 462 (478)
T KOG1129|consen 442 SGDI--------LGARSLLNAAK--SVMPDM 462 (478)
T ss_pred cCch--------HHHHHHHHHhh--hhCccc
Confidence 8865 69998885443 234544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.7e-06 Score=95.49 Aligned_cols=319 Identities=14% Similarity=0.084 Sum_probs=214.8
Q ss_pred HHcCCHHHHHHHHHcCCC---CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044791 257 CQEGKVKEAIELMDKGVK---ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARR 333 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~~~~---pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~ 333 (623)
...|++++|++++.+-|+ .....|.+|...|-..|+.+++...+-.+-... +-|...|..+.....+.|.++.|.-
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 334999999999987444 345789999999999999999998885544432 4478999999999999999999999
Q ss_pred HHHHhhcCChH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 334 VFDHMADRSMD---SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQ----TFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 334 lf~~m~~~~~~---tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~----ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
.|.+..+.+.. .+---+..|-+.|+..+|+.-|.+|......-|.. +--.++..+...++.+.|++.++....
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99998765443 44445677899999999999999999863311222 333456677788888999999999887
Q ss_pred hcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC--CCCCH----------------------HHHHH----HHHHHH
Q 044791 407 EFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP--FEPTA----------------------EFWEA----LRNYAR 458 (623)
Q Consensus 407 ~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~--~~Pd~----------------------~ty~~----Li~a~~ 458 (623)
+++-..+...++.++..|.+...++.|.......-. .++|. ..|.. +.-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 655566778899999999999999999888766111 11221 11111 111222
Q ss_pred HcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcce
Q 044791 459 IHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRY 538 (623)
Q Consensus 459 ~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t 538 (623)
.....+..+.+...+.+- ..... -+...|.-+.+++...|++ .+|+++|......-..=+...
T Consensus 389 ~L~~~e~~e~ll~~l~~~-n~~~~--------d~~dL~~d~a~al~~~~~~--------~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVED-NVWVS--------DDVDLYLDLADALTNIGKY--------KEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred cccccchHHHHHHHHHHh-cCChh--------hhHHHHHHHHHHHHhcccH--------HHHHHHHHHHhcCccccchhh
Confidence 333333333333333332 21122 3466778888999999988 699999977764422222222
Q ss_pred eeeccCHHHHHHHHHHHHhHHHHHHhcccCC----CC-Ch--hHHHhhHhhhcchhHHHHHHHHHhCCc
Q 044791 539 VLHDIDQEAKEQALLYHSERLAIAYGLISTP----AR-TP--LRIIKNLRVCGDCHNAIKIMSRIVGRE 600 (623)
Q Consensus 539 ~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m----~~-~~--~~i~~~l~~~g~~~~a~~l~~~~~~~~ 600 (623)
..+.+-++...|..++|..+++.. +. .. +.+-.-+-.-|+.++|++.+..|...+
T Consensus 452 -------w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 452 -------WYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred -------hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 223334556667777777665542 21 11 223344567788889999888876443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.3e-06 Score=84.73 Aligned_cols=282 Identities=16% Similarity=0.107 Sum_probs=201.7
Q ss_pred HHHHHHH--HcCCHHHHHHHHHcCCC--C-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044791 251 ADLARLC--QEGKVKEAIELMDKGVK--A-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 251 ~li~~~~--~~g~~~~A~~l~~~~~~--p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~ 325 (623)
.+..++. -.|+|..|+++..+.-. + -...|..-..+--..|+.+.|-.++.+..+.--.++..++-+........
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 4455554 37999999999965222 2 23456666777888899999999999998863356777888888899999
Q ss_pred CCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHH
Q 044791 326 GSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE-------QTFLAVFSACGSADAIE 395 (623)
Q Consensus 326 g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~-------~ty~~li~a~~~~g~~e 395 (623)
|+.+.|..-.+.+.+ ...........+|.+.|++.+++.++.+|.+.|+--|. .+|..++.-+...+..+
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 999999988886654 56778999999999999999999999999999876553 37888888888888888
Q ss_pred HHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 396 EAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 396 ~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
.-...++..-.+ .+-+...-.+++.-+.++|+.++|.++.+++++..-|.. . ...-.+.+-++.+.-+++.+....
T Consensus 247 gL~~~W~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L-~~~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 247 GLKTWWKNQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-L-CRLIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHHhccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-H-HHHHhhcCCCCchHHHHHHHHHHH
Confidence 777778777653 334455556788889999999999999988666333333 1 122244556666655555555555
Q ss_pred cCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHH
Q 044791 476 LDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYH 555 (623)
Q Consensus 476 m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~ 555 (623)
..+++ | ..+.++=.-|.+.+.| .+|.++|+ ......|+..+|..+-+ .+..
T Consensus 323 ~h~~~----------p--~L~~tLG~L~~k~~~w--------~kA~~~le--aAl~~~~s~~~~~~la~-------~~~~ 373 (400)
T COG3071 323 QHPED----------P--LLLSTLGRLALKNKLW--------GKASEALE--AALKLRPSASDYAELAD-------ALDQ 373 (400)
T ss_pred hCCCC----------h--hHHHHHHHHHHHhhHH--------HHHHHHHH--HHHhcCCChhhHHHHHH-------HHHH
Confidence 44332 2 3555666667777877 48888886 45566777777766554 4555
Q ss_pred HhHHHHHHhc
Q 044791 556 SERLAIAYGL 565 (623)
Q Consensus 556 ~g~l~~A~~l 565 (623)
.|...+|...
T Consensus 374 ~g~~~~A~~~ 383 (400)
T COG3071 374 LGEPEEAEQV 383 (400)
T ss_pred cCChHHHHHH
Confidence 5555555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.6e-08 Score=66.95 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=28.9
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 044791 306 STIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 306 ~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~ 339 (623)
.|+.||..+||+||++||+.|++++|+++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788888888888888888888888888888884
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.0001 Score=78.18 Aligned_cols=301 Identities=14% Similarity=0.055 Sum_probs=172.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHc---C--CCCCHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHH---HH
Q 044791 249 SVADLARLCQEGKVKEAIELMDK---G--VKADAS-CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNK---VI 319 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~~---~--~~pd~~-ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~---Li 319 (623)
+..+...+...|+.++|...+.+ . ...+.. ........+...|++++|.+++++.++.. +.|...+.. +.
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~ 87 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHH
Confidence 33444555566777776665532 1 122332 22233445677899999999999998863 334445442 22
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 044791 320 EMYGKCGSMTDARRVFDHMADRS---MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEE 396 (623)
Q Consensus 320 ~~y~k~g~~~~A~~lf~~m~~~~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~ 396 (623)
......+..+.+.++++.....+ ...+..+...+...|++++|+..+++..+.. ..+...+..+..++...|++++
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 88 GLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred HhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 22223456666666665532222 2244556678899999999999999999864 2245678888889999999999
Q ss_pred HHHHHHHHHhhcCCCCCc--cchhhHHHHHHhcCCHHHHHHHHHhhCCCCC--CH-HHH-H--HHHHHHHHcCChhHHHH
Q 044791 397 AFIHFESMKSEFGISPGT--EHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP--TA-EFW-E--ALRNYARIHGDIDLEDH 468 (623)
Q Consensus 397 A~~l~~~m~~~~g~~p~~--~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P--d~-~ty-~--~Li~a~~~~g~~~~A~~ 468 (623)
|+.++++........++. ..|..+...+...|+.++|..+|++.....| .. ... + .++.-+...|..+.+.+
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 246 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR 246 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH
Confidence 999999887532222232 2355678889999999999999999443333 21 111 1 33334445565443333
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccC-cceeeeccCHHH
Q 044791 469 AEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPD-TRYVLHDIDQEA 547 (623)
Q Consensus 469 ~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd-~~t~~~li~~~~ 547 (623)
. +.+......... . ............++...|+. ++|.++++.++......+ .......+....
T Consensus 247 w-~~~~~~~~~~~~-----~-~~~~~~~~~~a~~~~~~~~~--------~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~ 311 (355)
T cd05804 247 W-EDLADYAAWHFP-----D-HGLAFNDLHAALALAGAGDK--------DALDKLLAALKGRASSADDNKQPARDVGLPL 311 (355)
T ss_pred H-HHHHHHHHhhcC-----c-ccchHHHHHHHHHHhcCCCH--------HHHHHHHHHHHHHHhccCchhhhHHhhhHHH
Confidence 3 222221111000 0 01112222455566667766 588888887765433211 111111122122
Q ss_pred HHHHHHHHHhHHHHHHhcc
Q 044791 548 KEQALLYHSERLAIAYGLI 566 (623)
Q Consensus 548 k~~~~~~~~g~l~~A~~ll 566 (623)
-........|+.++|...+
T Consensus 312 l~A~~~~~~g~~~~A~~~L 330 (355)
T cd05804 312 AEALYAFAEGNYATALELL 330 (355)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 2234455667777777665
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.5e-06 Score=89.85 Aligned_cols=214 Identities=15% Similarity=0.116 Sum_probs=167.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHH
Q 044791 289 NPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQL 365 (623)
Q Consensus 289 ~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l 365 (623)
-.|+.-+|.+-|+..++.... +...|--+..+|....+-++....|++...- +..+|..-...+.-.+++++|..-
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 357888999999999886433 2333777888999999999999999988764 445888888888889999999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCC
Q 044791 366 FEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE 444 (623)
Q Consensus 366 ~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~ 444 (623)
|++.++. .| +++.|.-+..+..+.+++++++..|++.+++ +.--.+.|+.....+...+++++|.+.|+.+|+++
T Consensus 417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999875 44 5678888888888999999999999999965 33456789999999999999999999999988877
Q ss_pred CCH----HHHHHHHH----HHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccc
Q 044791 445 PTA----EFWEALRN----YARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYR 516 (623)
Q Consensus 445 Pd~----~ty~~Li~----a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~ 516 (623)
|+. +.-..||. .+.=.+++..|+.+++...+++++. ...|.+|-......|+.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkc------------e~A~~tlaq~~lQ~~~i------- 553 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKC------------EQAYETLAQFELQRGKI------- 553 (606)
T ss_pred cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchH------------HHHHHHHHHHHHHHhhH-------
Confidence 762 11111111 1112388999999999999988774 44777777776777765
Q ss_pred hHHHHHHHHHH
Q 044791 517 DDEKLKALNQM 527 (623)
Q Consensus 517 ~~eal~~~~~M 527 (623)
++|+++|++-
T Consensus 554 -~eAielFEks 563 (606)
T KOG0547|consen 554 -DEAIELFEKS 563 (606)
T ss_pred -HHHHHHHHHH
Confidence 7999999543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.8e-05 Score=80.80 Aligned_cols=259 Identities=14% Similarity=0.154 Sum_probs=153.8
Q ss_pred HcCCHHHHHHHHHc--CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044791 258 QEGKVKEAIELMDK--GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVF 335 (623)
Q Consensus 258 ~~g~~~~A~~l~~~--~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf 335 (623)
..|++..|.++|++ ...||..+|.+.|+-=.+-+.++.|..+|++.+- +.|++.+|-.....=-++|.+.-|..+|
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 46788888888876 6779999999999988888999999999998876 6788888877777667777777777666
Q ss_pred HHhhcC--------------------------------------------------------------------------
Q 044791 336 DHMADR-------------------------------------------------------------------------- 341 (623)
Q Consensus 336 ~~m~~~-------------------------------------------------------------------------- 341 (623)
+...+.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 654321
Q ss_pred ----------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCCHHHHHHHH
Q 044791 342 ----------SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE-------QTFLAVFSAC---GSADAIEEAFIHF 401 (623)
Q Consensus 342 ----------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~-------~ty~~li~a~---~~~g~~e~A~~l~ 401 (623)
|-.+|--.+..--..|+.+...++|++.... +.|-. +.|.-+=-+| ....+++.+.++|
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2226666666666778888888888887754 44411 1221111111 2345666666666
Q ss_pred HHHHhhcCCCC-CccchhhHHHHHH----hcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 402 ESMKSEFGISP-GTEHYLGLVGVLG----KCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 402 ~~m~~~~g~~p-~~~ty~~Li~~~~----k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
...+. +-| ...||..|=-+|+ ++.++..|.+++..++|.-|-..+|...|..=...+++|.+..+++.+.+.
T Consensus 390 q~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 390 QACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 65552 222 3334443333332 344555555555555554455555555555444455555555555555554
Q ss_pred CCCCCCCC----------------------CCCC--CCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHC
Q 044791 477 DPSKADPK----------------------KIPT--PPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKES 530 (623)
Q Consensus 477 ~~~~~~~~----------------------~~~~--~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~ 530 (623)
.|.++.+= .+.+ .-.....+.+.|+--...|.+ +.|..+++.+.+.
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~--------ekaR~LYerlL~r 536 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF--------EKARALYERLLDR 536 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH--------HHHHHHHHHHHHh
Confidence 44443210 0000 012244555666666666666 6888888777544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-05 Score=77.28 Aligned_cols=197 Identities=17% Similarity=0.052 Sum_probs=153.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHH
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYAD 355 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~ 355 (623)
+..-|.-.|...|+...|.+-+++.++.. +.+..+|..+...|.+.|..+.|.+.|++... .+....|....-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 46677778899999999999999998863 23578888889999999999999999987764 345578888888899
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccchhhHHHHHHhcCCHHHH
Q 044791 356 NGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEHYLGLVGVLGKCGHLFEA 433 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~~k~g~~e~A 433 (623)
.|++++|+..|++....-.-+ -..||..+.-+..+.|+.+.|.+.|++..+ +.|+ ..+...|.....+.|++..|
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999988753222 246788888888889999999999988873 3443 44566777888889999999
Q ss_pred HHHHHhhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 434 QQFIEQKL-PFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 434 ~~lf~~~m-~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
..++++.- ...++..+.-..|..-...|+.+.+-+.-..+....|.
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 99988821 24467777777888888889988777766667665544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.7e-06 Score=88.71 Aligned_cols=264 Identities=15% Similarity=0.085 Sum_probs=191.0
Q ss_pred HHHHHHcCCHHHHHHHHHcC---CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 044791 253 LARLCQEGKVKEAIELMDKG---VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMT 329 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~---~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~ 329 (623)
...+-..+++.+.+++++.- ..+...++..-|.++.+.|+..+-..+=.+|++. .+-...+|-++.--|.-.|+.+
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcH
Confidence 33455678888888887642 2234445666677888888877777777777775 3445789999999999999999
Q ss_pred HHHHHHHHhhcCChH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 330 DARRVFDHMADRSMD---SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 330 ~A~~lf~~m~~~~~~---tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
+|++.|.+....|.. .|-.+...|+-.|+.|.|+..|...-+.- .-...-+.-+.--|.+.+.++.|.++|....
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~- 407 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL- 407 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHH-
Confidence 999999987655543 89999999999999999999888876531 1111223334456778899999999998877
Q ss_pred hcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCC-------CC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 407 EFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-------FE-PTAEFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 407 ~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-------~~-Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
++.| |...++-+.-+....+.+.+|..+|+.++. .. --..+++.|..+|.+.+..++|+..++....+.
T Consensus 408 --ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 408 --AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred --hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 6777 566666666666778899999999988442 11 134568888889999999999999999999988
Q ss_pred CCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeecc
Q 044791 478 PSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDI 543 (623)
Q Consensus 478 ~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li 543 (623)
+.+.. |+.++--.+...|.+ +.|++.| =+..++.||-.+...++
T Consensus 486 ~k~~~------------~~asig~iy~llgnl--------d~Aid~f--hKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 486 PKDAS------------THASIGYIYHLLGNL--------DKAIDHF--HKALALKPDNIFISELL 529 (611)
T ss_pred CCchh------------HHHHHHHHHHHhcCh--------HHHHHHH--HHHHhcCCccHHHHHHH
Confidence 77644 555554455566665 6888887 33446778766555444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=64.63 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044791 373 GLQPNEQTFLAVFSACGSADAIEEAFIHFESM 404 (623)
Q Consensus 373 g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m 404 (623)
|+.||.+||++||++||+.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.3e-05 Score=81.90 Aligned_cols=200 Identities=8% Similarity=0.020 Sum_probs=146.0
Q ss_pred HHHcCCHHHHHHHHHcCCC--CCH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH--H
Q 044791 256 LCQEGKVKEAIELMDKGVK--ADA-SCFYTLFELCGNPK-WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSM--T 329 (623)
Q Consensus 256 ~~~~g~~~~A~~l~~~~~~--pd~-~ty~~Ll~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~--~ 329 (623)
+...++.++|+.++.+.+. |+. .+|+....++...| ++++++++++++++...+ +..+|+...-++.+.|+. +
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhH
Confidence 4556788999999987544 443 34666666666677 689999999999987533 667788776667777763 7
Q ss_pred HHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCH----HHHHH
Q 044791 330 DARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA---DAI----EEAFI 399 (623)
Q Consensus 330 ~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~---g~~----e~A~~ 399 (623)
+++.++++|.+ ++..+|+....++...|++++|++.++++++.++. |..+|+....++.+. |+. +++++
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 78899988876 45669999999999999999999999999987655 556666666555544 323 46667
Q ss_pred HHHHHHhhcCCCC-CccchhhHHHHHHhc----CCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHc
Q 044791 400 HFESMKSEFGISP-GTEHYLGLVGVLGKC----GHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIH 460 (623)
Q Consensus 400 l~~~m~~~~g~~p-~~~ty~~Li~~~~k~----g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~ 460 (623)
+...++ .+.| |...|+-+...|... ++..+|.+++.+.+...| +......|++.|+..
T Consensus 205 y~~~aI---~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 205 YTIDAI---LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHH---HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 776666 3345 677888888888773 445678888888555455 567788888888863
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.9e-06 Score=90.29 Aligned_cols=225 Identities=12% Similarity=0.069 Sum_probs=170.7
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHH
Q 044791 285 ELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDE 361 (623)
Q Consensus 285 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~ee 361 (623)
..+.+.|++.+|.-+|+..++... -++..|--|...-...++=..|+..|.+..+. +....-.|...|...|.-.+
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 344677889999999988888643 36888988988888888888888888888765 44577777778999999999
Q ss_pred HHHHHHHHHHcCCC-----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHH
Q 044791 362 GLQLFEQMRKLGLQ-----P---NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEA 433 (623)
Q Consensus 362 A~~l~~eM~~~g~~-----P---d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A 433 (623)
|+.+|+..+....+ + +...-+. ..+.....+.+..++|-++....+.++|..++..|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999888754311 0 0000000 222333445667788888877767667888889999999999999999
Q ss_pred HHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCC
Q 044791 434 QQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNP 512 (623)
Q Consensus 434 ~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~ 512 (623)
.++|+.++.++| |..+||-|...++...+.++|+.++.+.+++.|.-+. .-|+ |--+|...|.|
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR-----------~RyN-lgIS~mNlG~y--- 514 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR-----------VRYN-LGISCMNLGAY--- 514 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee-----------eehh-hhhhhhhhhhH---
Confidence 999999898889 6689999999999999999999999999999988664 2344 33457788888
Q ss_pred cccchHHHHHHH---HHHHHCCc
Q 044791 513 TLYRDDEKLKAL---NQMKESTY 532 (623)
Q Consensus 513 ~~~~~~eal~~~---~~M~~~Gi 532 (623)
+||.+.| -.|..++.
T Consensus 515 -----kEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 515 -----KEAVKHLLEALSMQRKSR 532 (579)
T ss_pred -----HHHHHHHHHHHHhhhccc
Confidence 5888888 44555543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.3e-05 Score=86.74 Aligned_cols=250 Identities=14% Similarity=0.114 Sum_probs=171.5
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCCHHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKADASCFYT 282 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd~~ty~~ 282 (623)
.+|++++|++.++.-.. .+.+... ..-.....|.+.|+.++|..+|+. ...||...|..
T Consensus 16 e~g~~~~AL~~L~~~~~--~I~Dk~~-----------------~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~ 76 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEK--QILDKLA-----------------VLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYR 76 (517)
T ss_pred HCCCHHHHHHHHHhhhh--hCCCHHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68999999999985422 3333222 222556678899999999999986 34577666555
Q ss_pred HHHHHh-C-----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHhhcCChH-HHHHHHHHHH
Q 044791 283 LFELCG-N-----PKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMT-DARRVFDHMADRSMD-SWHLMINGYA 354 (623)
Q Consensus 283 Ll~~~~-~-----~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~-~A~~lf~~m~~~~~~-tyn~Li~~~~ 354 (623)
.+..+. - ..+.+...++|+++...- |.....-.+.-.+.....+. .+...+..+..+++. +|+.|-..|.
T Consensus 77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~ 154 (517)
T PF12569_consen 77 GLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYK 154 (517)
T ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHc
Confidence 544443 2 235788889999887642 44333333333333322333 344555666777875 6777777777
Q ss_pred HcCChHHHHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccch
Q 044791 355 DNGLGDEGLQLFEQMRKL----G----------LQPNE--QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEHY 417 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~----g----------~~Pd~--~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ty 417 (623)
...+.+-...++.+.... | -.|+. .++..+...|-..|++++|++++++.+ ...|+ +..|
T Consensus 155 d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI---~htPt~~ely 231 (517)
T PF12569_consen 155 DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI---EHTPTLVELY 231 (517)
T ss_pred ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCCcHHHH
Confidence 666666666777776532 1 12444 345555666888999999999999988 45675 6678
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 044791 418 LGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 418 ~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~ 478 (623)
..-...|-+.|++++|.+.++.+-.... |-..=+-.+..+.+.|++++|++.+..+..-+.
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 8888999999999999999998433333 555556677788899999999999998876554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.8e-05 Score=76.40 Aligned_cols=201 Identities=14% Similarity=0.061 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKGVKADA---SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~~~pd~---~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
...-|.-+|...|+...|..-+++.+..|. .+|..+...|-+.|..+.|.+.|++.++.. +-+-.+.|+....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 445677889999999999999998655443 578889999999999999999999999864 2367899999999999
Q ss_pred cCCHHHHHHHHHHhhc-CC----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044791 325 CGSMTDARRVFDHMAD-RS----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~-~~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~ 399 (623)
.|++++|...|++... +. ..+|..+.-+..+.|+++.|...|++.++..-. ...+.-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 9999999999998765 32 238999999999999999999999999986322 34567788888899999999999
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHH
Q 044791 400 HFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEA 452 (623)
Q Consensus 400 l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~ 452 (623)
+++..... ..++..+.-..|..--+.|+.+.|.++=...-...|...-|-.
T Consensus 195 ~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 195 YLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 99998864 3377777666677777789988887765551124455544433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1e-05 Score=88.44 Aligned_cols=135 Identities=22% Similarity=0.234 Sum_probs=102.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCChH--HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMADRSMD--SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIE 395 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~~~~~--tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e 395 (623)
.|.+......|.+|+.+++.+...++. -|..+..-|+..|+++.|.++|.+.- .++-.|..|.+.|+++
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 345556678888999999888877666 37777788999999999999987632 3566788899999999
Q ss_pred HHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 044791 396 EAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEE 471 (623)
Q Consensus 396 ~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~ 471 (623)
.|.++-++.. |-...+..|-+-..-+-+.|++.+|+++|-. ++ .|+. .|..|-++|..|...++.+
T Consensus 809 da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyit-i~-~p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 809 DAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYIT-IG-EPDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEE-cc-CchH-----HHHHHHhhCcchHHHHHHH
Confidence 9988877665 5566677777777778888999999998887 66 5654 4567788888884444433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.8e-06 Score=91.65 Aligned_cols=222 Identities=14% Similarity=0.058 Sum_probs=180.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG 326 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g 326 (623)
..-..+...+...|-...|+.+|++ ...|.-+|.+|+..|+-.+|..+..+-++ -+||...|..|++......
T Consensus 399 q~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 3344566778899999999999986 35678889999999999999999988877 4789999999999999888
Q ss_pred CHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 327 SMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 327 ~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
-+++|.++++....+--..++. ...+.++++++.+.|+.-.+.. ..-..||-.+..+..+.+++..|.+.|....
T Consensus 472 ~yEkawElsn~~sarA~r~~~~---~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv- 546 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLAL---LILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV- 546 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhcc---ccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh-
Confidence 9999999998775542222222 2344799999999999887653 2245788888888889999999999999887
Q ss_pred hcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCC
Q 044791 407 EFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE-PTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKAD 482 (623)
Q Consensus 407 ~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~-Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~ 482 (623)
...| +...||+|-.+|.+.|+-.+|...+.+++.+. -+...|-..+-...+.|.++.|.+++..+.+|......
T Consensus 547 --tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 547 --TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred --hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhccc
Confidence 5677 47899999999999999999999999977643 23456767777778999999999999999999877664
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=98.18 Aligned_cols=211 Identities=14% Similarity=0.173 Sum_probs=142.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 044791 298 KVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSM----DSWHLMINGYADNGLGDEGLQLFEQMRKLG 373 (623)
Q Consensus 298 ~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~----~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g 373 (623)
.++..|...|+.|+.+||..||.-||..|+++.|- +|.-|+-++. ..++.++.+...+++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46677888999999999999999999999999999 9998876543 48999999999999988876
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HH---hh---cCC-------------CCC-ccchhhHHHHHHhcCCHHH
Q 044791 374 LQPNEQTFLAVFSACGSADAIEEAFIHFES-MK---SE---FGI-------------SPG-TEHYLGLVGVLGKCGHLFE 432 (623)
Q Consensus 374 ~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~-m~---~~---~g~-------------~p~-~~ty~~Li~~~~k~g~~e~ 432 (623)
.|...||+.|+.+|+..||+.. ++..++ |. .. .|+ .|. ...-.+++..+.-.|-++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 7889999999999999999765 222222 22 11 111 110 0001123444555566777
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCC
Q 044791 433 AQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNP 512 (623)
Q Consensus 433 A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~ 512 (623)
+++++.. +.......++..+++-+.... .-.+++....+.... .++..+|..++++..-.|+.
T Consensus 158 llkll~~-~Pvsa~~~p~~vfLrqnv~~n--tpvekLl~~cksl~e-----------~~~s~~l~a~l~~alaag~~--- 220 (1088)
T KOG4318|consen 158 LLKLLAK-VPVSAWNAPFQVFLRQNVVDN--TPVEKLLNMCKSLVE-----------APTSETLHAVLKRALAAGDV--- 220 (1088)
T ss_pred HHHHHhh-CCcccccchHHHHHHHhccCC--chHHHHHHHHHHhhc-----------CCChHHHHHHHHHHHhcCch---
Confidence 7777766 542211112211233333222 112244444444322 28899999999999999977
Q ss_pred cccchHHHHHHHHHHHHCCcccCcceeeecc
Q 044791 513 TLYRDDEKLKALNQMKESTYVPDTRYVLHDI 543 (623)
Q Consensus 513 ~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li 543 (623)
+-|..++.+|++.|+.-+...|--++
T Consensus 221 -----d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 221 -----DGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred -----hhHHHHHHHHHHcCCCcccccchhhh
Confidence 69999999999999987776554443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-05 Score=85.31 Aligned_cols=203 Identities=14% Similarity=0.019 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKGVKADA---SCFYTLFELCGNPKWYENAKKVHDYFLQS--TIRGDLVLNNKVIEMY 322 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~~~pd~---~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~~y~~Li~~y 322 (623)
+|.++..-|.-.|+..+|.+.|.+....|. ..|-....+++-.|.-|.|+..|...-+. |.. -...| +.--|
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey 390 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEY 390 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHH
Confidence 344444444455555555555554322221 34555555555555555555555544432 211 01111 23345
Q ss_pred HHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CC----CCCHHHHHHHHHHHHhcCC
Q 044791 323 GKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKL--GL----QPNEQTFLAVFSACGSADA 393 (623)
Q Consensus 323 ~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~--g~----~Pd~~ty~~li~a~~~~g~ 393 (623)
.+.++++-|.+.|.+... .|...++-+.......+.+.+|..+|+..++. .+ .--.-+++.|..+|.+.++
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 555666666666655443 24556666666666666777777777666521 00 0133456677777777777
Q ss_pred HHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 044791 394 IEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRN 455 (623)
Q Consensus 394 ~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~ 455 (623)
+++|+..|+.... -..-+..+|.++.-.|...|.++.|.+.|.+++.+.||..+-..|+.
T Consensus 471 ~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 471 YEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 7777777776663 22335666777777777777777777777776666776665555555
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.1e-05 Score=78.67 Aligned_cols=225 Identities=14% Similarity=0.043 Sum_probs=110.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHc--CCCCCHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHH---------
Q 044791 251 ADLARLCQEGKVKEAIELMDK--GVKADASC-FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKV--------- 318 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~--~~~pd~~t-y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~L--------- 318 (623)
.+...+...|+.++|+..|++ .+.|+..+ ...-...+...|+++....+...+.... .-+..-|-.-
T Consensus 237 ~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~ 315 (564)
T KOG1174|consen 237 ALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKK 315 (564)
T ss_pred HHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhh
Confidence 566677778888888877765 33343321 1122223345555555555555444321 0111122222
Q ss_pred -------------------------HHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044791 319 -------------------------IEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 319 -------------------------i~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~ 370 (623)
.+++...|+.++|.-.|+.... .+..+|.-|+..|...|++.||.-+-++..
T Consensus 316 ~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 316 FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTI 395 (564)
T ss_pred HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 2333444555555555543322 234455555555555555555554444433
Q ss_pred HcCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHhhcCCCCC-ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 371 KLGLQPNEQTFLAVF-SACGS-ADAIEEAFIHFESMKSEFGISPG-TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 371 ~~g~~Pd~~ty~~li-~a~~~-~g~~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
.. +.-++.+.+.+. ..|.. ...-|+|..+++.-. .+.|+ ....+.+...+...|+.++++.++++.+...||.
T Consensus 396 ~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 396 RL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred HH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc
Confidence 22 122333333331 22221 222345555554433 33443 2233444555556666666666666655556666
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 448 EFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 448 ~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
...+.|.+.++..+.+.+|.+-+.....++|++
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 666666666666666666666666666655553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00026 Score=77.41 Aligned_cols=225 Identities=17% Similarity=0.135 Sum_probs=165.4
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044791 255 RLCQEGKVKEAIELMDKGVKADA---SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDA 331 (623)
Q Consensus 255 ~~~~~g~~~~A~~l~~~~~~pd~---~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A 331 (623)
.++..|+-++|.+..+.|++-|. ++|+.+.-.+....++++|++.|...++.+ +-|..++-.|--.=+..|+++..
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 45678999999999998887654 789999888888999999999999999865 33677887777777788888888
Q ss_pred HHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHH------HHHHHhcCCHHHHHHHH
Q 044791 332 RRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLG-LQPNEQTFLAV------FSACGSADAIEEAFIHF 401 (623)
Q Consensus 332 ~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g-~~Pd~~ty~~l------i~a~~~~g~~e~A~~l~ 401 (623)
...-....+. ....|..++.++.-.|++..|..++++.+..- -.|+...|.-. .....+.|.+++|.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 7777766553 34489999999999999999999999998654 24565555433 23356788999999888
Q ss_pred HHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHH-HHH-HcCChhHHHHHHHHHHhcCCC
Q 044791 402 ESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRN-YAR-IHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 402 ~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~-a~~-~~g~~~~A~~~~~~~~~m~~~ 479 (623)
..-.. .+.-....-.+-.+.+.+.|++++|..+|...+...||.+-|...+. ++. -.+..+....++..+.+.-+.
T Consensus 209 ~~~e~--~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 209 LDNEK--QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred Hhhhh--HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 66552 22222233345567789999999999999996666788877766555 443 333343333677777776665
Q ss_pred CCC
Q 044791 480 KAD 482 (623)
Q Consensus 480 ~~~ 482 (623)
...
T Consensus 287 ~e~ 289 (700)
T KOG1156|consen 287 HEC 289 (700)
T ss_pred ccc
Confidence 554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.8e-05 Score=90.71 Aligned_cols=224 Identities=15% Similarity=0.149 Sum_probs=174.4
Q ss_pred CCH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-Ch-HHHH
Q 044791 275 ADA-SCFYTLFELCGNPKWYENAKKVHDYFLQS-TIRG---DLVLNNKVIEMYGKCGSMTDARRVFDHMADR-SM-DSWH 347 (623)
Q Consensus 275 pd~-~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-g~~p---d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-~~-~tyn 347 (623)
|+. ..|-.-|.-....+++++|.++.+++++. ++.- -..+|.++++.-...|.-+...++|++..+- |. ..|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 443 45777788888899999999999998875 2211 1467888888888888889999999999863 33 3799
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhc
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKC 427 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~ 427 (623)
.|...|.+.+++++|.++|+.|.++ +.-....|...+..+.+..+-++|.+++.+..+...-.-.+......+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 9999999999999999999999976 334667888999999999999999999998884311111344445566677889
Q ss_pred CCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCcc
Q 044791 428 GHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRL 506 (623)
Q Consensus 428 g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~ 506 (623)
|+.+.+..+|+..+...| ....|+..|+.-.++|+.+.++.+++++.++.-... --+..|..+|+.-...
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k---------kmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK---------KMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh---------HhHHHHHHHHHHHHhc
Confidence 999999999999444344 568999999999999999999999999988755432 1266777888877776
Q ss_pred cc
Q 044791 507 VE 508 (623)
Q Consensus 507 ~~ 508 (623)
|+
T Consensus 1685 Gd 1686 (1710)
T KOG1070|consen 1685 GD 1686 (1710)
T ss_pred Cc
Confidence 65
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00015 Score=79.12 Aligned_cols=226 Identities=14% Similarity=0.149 Sum_probs=140.1
Q ss_pred HHHHHHcCCHHHHHHHHHc--CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHH
Q 044791 253 LARLCQEGKVKEAIELMDK--GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD-LVLNNKVIEMYGKCGSMT 329 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~--~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~y~~Li~~y~k~g~~~ 329 (623)
+........++.|..+|.+ ...++...|.--+..---.+..++|++++++.++. -|+ ...|-.+...+-..++++
T Consensus 625 vKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHH
Confidence 3333444455555555532 34444444444344333444555555555555442 222 234444444444555555
Q ss_pred HHHHHHHHhhc--C-ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 330 DARRVFDHMAD--R-SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 330 ~A~~lf~~m~~--~-~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
.|.+.|..-.+ + .+..|-.|...=-+.|.+-+|..+|++.+-++.+ +...|...|..=.+.|..+.|..++.....
T Consensus 703 ~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 703 MAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55554443222 2 2225666666666677777888888877766433 667788888888888888888777665554
Q ss_pred hc----------------------------CCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHH
Q 044791 407 EF----------------------------GISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWEALRNYA 457 (623)
Q Consensus 407 ~~----------------------------g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~~Li~a~ 457 (623)
++ .+.-|.++..++...|-...++++|.+.|++++.+.||. .+|..+...+
T Consensus 782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfe 861 (913)
T KOG0495|consen 782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFE 861 (913)
T ss_pred hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHH
Confidence 32 123344555555566666778999999999988877765 8999999999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCC
Q 044791 458 RIHGDIDLEDHAEELMVDLDPSKA 481 (623)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~m~~~~~ 481 (623)
..+|.-+.-.+++..+..-+|...
T Consensus 862 l~hG~eed~kev~~~c~~~EP~hG 885 (913)
T KOG0495|consen 862 LRHGTEEDQKEVLKKCETAEPTHG 885 (913)
T ss_pred HHhCCHHHHHHHHHHHhccCCCCC
Confidence 999988888889998888776644
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-05 Score=78.66 Aligned_cols=179 Identities=16% Similarity=0.052 Sum_probs=123.2
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCh---H---
Q 044791 275 ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD----LVLNNKVIEMYGKCGSMTDARRVFDHMADRSM---D--- 344 (623)
Q Consensus 275 pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~---~--- 344 (623)
.....+..++..+...|++++|...|+++++.. |+ ..++..+..+|.+.|++++|+..|+++.+.+. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 355678888888999999999999999988753 32 24677788899999999999999998875321 1
Q ss_pred HHHHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCcc
Q 044791 345 SWHLMINGYADN--------GLGDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTE 415 (623)
Q Consensus 345 tyn~Li~~~~~~--------g~~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ 415 (623)
++..+..++... |++++|.+.|+++.+. .|+. ..+..+... .. .... .. .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~~------~~-~-------- 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRNR------LA-G-------- 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHHH------HH-H--------
Confidence 455555666654 6788899999988876 3443 222222111 00 1100 00 0
Q ss_pred chhhHHHHHHhcCCHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 416 HYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT----AEFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 416 ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd----~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
....+...|.+.|++++|+..|++++...|+ ...+..+..++...|+.++|...++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0124566788889999999999885554443 367888888999999999888877777654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-05 Score=86.60 Aligned_cols=228 Identities=14% Similarity=0.077 Sum_probs=177.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCC---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKAD---ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS 327 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd---~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~ 327 (623)
.....+.+.|++.+|.-+|+..|+-| ...|--|..+-+..++-..|+..+.+.++.. +-+..+.-+|.-.|...|.
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 44556789999999999998766644 3578888889999999899999999999853 2267888999999999999
Q ss_pred HHHHHHHHHHhhcCChH-HHHHHH---------HHHHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHH
Q 044791 328 MTDARRVFDHMADRSMD-SWHLMI---------NGYADNGLGDEGLQLFEQMR-KLGLQPNEQTFLAVFSACGSADAIEE 396 (623)
Q Consensus 328 ~~~A~~lf~~m~~~~~~-tyn~Li---------~~~~~~g~~eeA~~l~~eM~-~~g~~Pd~~ty~~li~a~~~~g~~e~ 396 (623)
=..|+++|+.-...... .|...- ..+.....+.+..++|-++. ..+.++|...+..|.-.|--.|++++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 99999999876432110 110000 12223333556667776665 55655777777788888888999999
Q ss_pred HHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHH
Q 044791 397 AFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWEALRNYARIHGDIDLEDHAEELMV 474 (623)
Q Consensus 397 A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~ 474 (623)
|...|+..+ .++| |..+||-|...++...+.++|+.-|.+++.++|+. ..+..|.-.|...|.+++|.+.+=...
T Consensus 449 aiDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999988 5677 67899999999999999999999999999999986 466667778899999999988888888
Q ss_pred hcCCCCCC
Q 044791 475 DLDPSKAD 482 (623)
Q Consensus 475 ~m~~~~~~ 482 (623)
.|..++..
T Consensus 526 ~mq~ks~~ 533 (579)
T KOG1125|consen 526 SMQRKSRN 533 (579)
T ss_pred Hhhhcccc
Confidence 88777443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00012 Score=77.60 Aligned_cols=194 Identities=13% Similarity=-0.011 Sum_probs=131.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTI-RGDL-VLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMING 352 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd~-~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~ 352 (623)
..|..+...+...|+.+++.+.+.+..+... ..+. .........+...|++++|.+++++..+. +...+.. ..+
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 3566677777777888887777766654321 2232 22223345567789999999999987653 3334443 333
Q ss_pred HHHc----CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHh
Q 044791 353 YADN----GLGDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGK 426 (623)
Q Consensus 353 ~~~~----g~~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k 426 (623)
+... +..+.+.+.+.. .....|+. .....+...+...|++++|++.+++..+ +.| +...+..+..+|..
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE---LNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCcHHHHHHHHHHHH
Confidence 3333 444555555544 22233443 4445666778899999999999999984 344 45677888889999
Q ss_pred cCCHHHHHHHHHhhCCCCC---CH--HHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 427 CGHLFEAQQFIEQKLPFEP---TA--EFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 427 ~g~~e~A~~lf~~~m~~~P---d~--~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
.|++++|+.++++.+...| +. ..|..+...+...|+.++|..+++......
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~ 216 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS 216 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence 9999999999999665433 32 346678888999999999999998875543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00026 Score=76.67 Aligned_cols=345 Identities=15% Similarity=0.114 Sum_probs=182.6
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCC--CCHHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVK--ADASCFYT 282 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~--pd~~ty~~ 282 (623)
.+|+|++|....+++.. ..|+ +...+..-+.++.+.+++++|+.+.+.... .+.+-+-.
T Consensus 24 ~~~e~e~a~k~~~Kil~--~~pd-----------------d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fE 84 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILS--IVPD-----------------DEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFE 84 (652)
T ss_pred cchHHHHHHHHHHHHHh--cCCC-----------------cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHH
Confidence 78999999999998854 2233 222233445667778888888877765322 22222212
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--------------------
Q 044791 283 LFELCGNPKWYENAKKVHDYFLQSTIRGD-LVLNNKVIEMYGKCGSMTDARRVFDHMADR-------------------- 341 (623)
Q Consensus 283 Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-------------------- 341 (623)
-..+..+.+..|+|+..++ |+.++ ..+...-...+.+.|++++|+.+|+.+.+.
T Consensus 85 KAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 2334446677888877776 33333 335555566677778888888888777431
Q ss_pred -----------ChHHHHHH---HHHHHHcCChHHHHHHHHHHHHcCC-------------CCCHH-HHHHHHHHHHhcCC
Q 044791 342 -----------SMDSWHLM---INGYADNGLGDEGLQLFEQMRKLGL-------------QPNEQ-TFLAVFSACGSADA 393 (623)
Q Consensus 342 -----------~~~tyn~L---i~~~~~~g~~eeA~~l~~eM~~~g~-------------~Pd~~-ty~~li~a~~~~g~ 393 (623)
...+|..+ ...+...|++.+|+++++..+..+. .-... .-.-|.-++-..|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 01134333 3446778999999999988832211 10111 11223344567899
Q ss_pred HHHHHHHHHHHHhhcCCCCCc----cchhhHHHHHHhc------------------------------------------
Q 044791 394 IEEAFIHFESMKSEFGISPGT----EHYLGLVGVLGKC------------------------------------------ 427 (623)
Q Consensus 394 ~e~A~~l~~~m~~~~g~~p~~----~ty~~Li~~~~k~------------------------------------------ 427 (623)
-++|..++...++. .. +|. ..-|.|+.+-...
T Consensus 240 t~ea~~iy~~~i~~-~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 240 TAEASSIYVDIIKR-NP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred hHHHHHHHHHHHHh-cC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888754 22 121 1222222111110
Q ss_pred ---CCHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhh
Q 044791 428 ---GHLFEAQQFIEQKLP-FEPTAEFWEALRNYARIHG--DIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILD 501 (623)
Q Consensus 428 ---g~~e~A~~lf~~~m~-~~Pd~~ty~~Li~a~~~~g--~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~ 501 (623)
+..+.+.++-.. +. ..|. ..+.+|+..+.+.. ....+.+.+..+.+-.+.+. ......++.
T Consensus 318 l~tnk~~q~r~~~a~-lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s-----------~~v~L~~aQ 384 (652)
T KOG2376|consen 318 LFTNKMDQVRELSAS-LPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKS-----------KVVLLLRAQ 384 (652)
T ss_pred HHhhhHHHHHHHHHh-CCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchh-----------HHHHHHHHH
Confidence 111111111111 11 1122 33334444332221 23333344443333222221 223334445
Q ss_pred hcCccccccCCcccchHHHHHHHH--------HHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccC-CCCC
Q 044791 502 GKSRLVEFRNPTLYRDDEKLKALN--------QMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLIST-PART 572 (623)
Q Consensus 502 ~~~~~~~~~~~~~~~~~eal~~~~--------~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~-m~~~ 572 (623)
.....|.+ +.|++++. ...+.+..|-.+.+...+ ..+..+.-....-+++|.+.+.. +...
T Consensus 385 l~is~gn~--------~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l--~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 385 LKISQGNP--------EVALEILSLFLESWKSSILEAKHLPGTVGAIVAL--YYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHhcCCH--------HHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHH--HHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 56666766 68888887 667778888776654332 23333344456677778776643 3333
Q ss_pred hh--HHHhh---H-hhhcchhHHHHHHHHHhC
Q 044791 573 PL--RIIKN---L-RVCGDCHNAIKIMSRIVG 598 (623)
Q Consensus 573 ~~--~i~~~---l-~~~g~~~~a~~l~~~~~~ 598 (623)
.. .++.- + .+.|.-.+|..++.++..
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 21 12211 1 334888899999998876
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00063 Score=74.40 Aligned_cols=188 Identities=15% Similarity=0.130 Sum_probs=78.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHH
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYAD 355 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~ 355 (623)
||+.....|.+.+.++-|..+|...++. +..+...|..++..=-..|..++-..+|.+... ...+.|-.....+..
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 4445555555555555555555554443 222334444444333334444444444444432 122233333334444
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHH
Q 044791 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQ 435 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~ 435 (623)
.|++-.|..++....+.... +...|...+....+...+|+|..+|.... ...++...|..-+....-.+..++|.+
T Consensus 597 agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 44444444444444433211 33344444444444444444444444433 233344444333333333444444444
Q ss_pred HHHhhCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHH
Q 044791 436 FIEQKLPFEPTAE-FWEALRNYARIHGDIDLEDHAEE 471 (623)
Q Consensus 436 lf~~~m~~~Pd~~-ty~~Li~a~~~~g~~~~A~~~~~ 471 (623)
++++++...|+.. .|-.+...+-..++++.|.+++.
T Consensus 673 llEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~ 709 (913)
T KOG0495|consen 673 LLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYL 709 (913)
T ss_pred HHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4444444344432 22233333444444444444433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0018 Score=68.54 Aligned_cols=357 Identities=14% Similarity=0.171 Sum_probs=207.9
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCC--CCH-HHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVK--ADA-SCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~--pd~-~ty~ 281 (623)
.++++..|.++|++... .++ .....+..-+..=.+...+..|..++++.+. |-+ ..|-
T Consensus 85 sq~e~~RARSv~ERALd-------vd~------------r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy 145 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALD-------VDY------------RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY 145 (677)
T ss_pred hHHHHHHHHHHHHHHHh-------ccc------------ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH
Confidence 68999999999998833 111 0122333455666788999999999987543 433 2344
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh--cCChHHHHHHHHHHHHcCCh
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA--DRSMDSWHLMINGYADNGLG 359 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~--~~~~~tyn~Li~~~~~~g~~ 359 (623)
--+..=-..|++..|.++|++..+ ..||...|.+.|+.=.+-..++.|..+|++.. .+++.+|---...=.+.|..
T Consensus 146 KY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 146 KYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcH
Confidence 445555667899999999999988 78999999999999999999999999999764 56776666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHH----------------------------------
Q 044791 360 DEGLQLFEQMRKLGLQPNEQTFLAVFSACG----SADAIEEAFIHF---------------------------------- 401 (623)
Q Consensus 360 eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~----~~g~~e~A~~l~---------------------------------- 401 (623)
.-|..+|+...+. + -|...--.|+.+++ .+..++.|.-+|
T Consensus 224 ~~aR~VyerAie~-~-~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 224 ALARSVYERAIEF-L-GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred HHHHHHHHHHHHH-h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 6666666655432 0 01111111111111 112222222222
Q ss_pred ----------HHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC-CCCCH--HHHHH---H-----HHHHHHc
Q 044791 402 ----------ESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-FEPTA--EFWEA---L-----RNYARIH 460 (623)
Q Consensus 402 ----------~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-~~Pd~--~ty~~---L-----i~a~~~~ 460 (623)
+.+.++ -.-|-.+|--.+..-...|+.+...++|++++. +.|-. ..|.- | +-.=...
T Consensus 302 ~Iv~KRk~qYE~~v~~--np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSK--NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HHhhhhhhHHHHHHHh--CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122211 112455555566666667788888888887554 33311 11111 1 1111245
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCC---------------CC----------CCCCCchhhHHHHhhhcCccccccCCccc
Q 044791 461 GDIDLEDHAEELMVDLDPSKADPK---------------KI----------PTPPPKKRTAISILDGKSRLVEFRNPTLY 515 (623)
Q Consensus 461 g~~~~A~~~~~~~~~m~~~~~~~~---------------~~----------~~~~p~~~t~~~li~~~~~~~~~~~~~~~ 515 (623)
.|++.+.++++...++.|...-.. .+ -|..|..-+|...|+.-...+.|
T Consensus 380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ef------ 453 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREF------ 453 (677)
T ss_pred hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhH------
Confidence 667777777777766655432210 00 13345555666666555555555
Q ss_pred chHHHHHHHHHHHHCCcccCc-ceeeeccCHHHHHHHHHHHHhHHHHHHhcccCC-----CCChhHHHhhH----hhhcc
Q 044791 516 RDDEKLKALNQMKESTYVPDT-RYVLHDIDQEAKEQALLYHSERLAIAYGLISTP-----ARTPLRIIKNL----RVCGD 585 (623)
Q Consensus 516 ~~~eal~~~~~M~~~Gi~Pd~-~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m-----~~~~~~i~~~l----~~~g~ 585 (623)
|...+++++..+.+ |.. .+|. +-+.+-...|..+.|..++.-- ...|.-++++| ..+|.
T Consensus 454 --DRcRkLYEkfle~~--Pe~c~~W~-------kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E 522 (677)
T KOG1915|consen 454 --DRCRKLYEKFLEFS--PENCYAWS-------KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE 522 (677)
T ss_pred --HHHHHHHHHHHhcC--hHhhHHHH-------HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence 56666666655443 221 1111 1112333455666665554431 24445577776 67788
Q ss_pred hhHHHHHHHHHhCCceee
Q 044791 586 CHNAIKIMSRIVGRELIV 603 (623)
Q Consensus 586 ~~~a~~l~~~~~~~~~~~ 603 (623)
...|.++..+++++.-.+
T Consensus 523 ~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 523 FEKARALYERLLDRTQHV 540 (677)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 888888888888765443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.4e-05 Score=76.22 Aligned_cols=178 Identities=15% Similarity=-0.014 Sum_probs=117.1
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCCH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-CC-HHHH
Q 044791 244 QVLPPSVADLARLCQEGKVKEAIELMDK--GVKADA----SCFYTLFELCGNPKWYENAKKVHDYFLQSTIR-GD-LVLN 315 (623)
Q Consensus 244 ~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~-pd-~~~y 315 (623)
........+...+...|++++|+..|++ ...|+. .++..+..++...|++++|+..++++++.... +. ..++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455677888889999999999999975 233432 46788889999999999999999999885321 11 1245
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHhhcCChH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044791 316 NKVIEMYGKC--------GSMTDARRVFDHMADRSMD---SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV 384 (623)
Q Consensus 316 ~~Li~~y~k~--------g~~~~A~~lf~~m~~~~~~---tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~l 384 (623)
..+..++.+. |+.++|++.|+.+.+.+.. .+..+... +..... .. .....+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~----~~~~~~-------~~-------~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM----DYLRNR-------LA-------GKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH----HHHHHH-------HH-------HHHHHH
Confidence 5566666654 7899999999998753322 22222111 000000 00 011244
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
...+.+.|++++|...++.....+.-.| ....+..+..++.+.|+.++|..+++.
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5567777888888888887775432222 245667777888888888888887777
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00017 Score=80.15 Aligned_cols=202 Identities=11% Similarity=0.014 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH-------------HcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELM-------------DKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVL 314 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~-------------~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 314 (623)
+|.+|...|.+..++|-|.-.+ +..-.++ .+=.-+.......|.+++|+.+|++-++
T Consensus 759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--------- 828 (1416)
T KOG3617|consen 759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR--------- 828 (1416)
T ss_pred HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------
Confidence 3445566666666666655443 1112232 2222233334567889999999998766
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCC-hHHHHHHHHHHHHcCChHHHHHHHHHH----------HHcC---------C
Q 044791 315 NNKVIEMYGKCGSMTDARRVFDHMADRS-MDSWHLMINGYADNGLGDEGLQLFEQM----------RKLG---------L 374 (623)
Q Consensus 315 y~~Li~~y~k~g~~~~A~~lf~~m~~~~-~~tyn~Li~~~~~~g~~eeA~~l~~eM----------~~~g---------~ 374 (623)
|..|=..|-..|+|++|+++-+.--.-- -.||..-..-+-..++.+.|++.|++. +... -
T Consensus 829 ~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~ 908 (1416)
T KOG3617|consen 829 YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR 908 (1416)
T ss_pred HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh
Confidence 4556677888999999998865322111 127777777778888899998888863 2221 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHH
Q 044791 375 QPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALR 454 (623)
Q Consensus 375 ~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li 454 (623)
+-|...|.-....+-..|+.|.|+.+|...+. |-+++...|-.|+.++|-.+-++ .-|......|.
T Consensus 909 ~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~e----sgd~AAcYhla 974 (1416)
T KOG3617|consen 909 KRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEE----SGDKAACYHLA 974 (1416)
T ss_pred ccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHh----cccHHHHHHHH
Confidence 22555666666677778999999999987762 56788889999999999999999 45777778899
Q ss_pred HHHHHcCChhHHHHHHHHH
Q 044791 455 NYARIHGDIDLEDHAEELM 473 (623)
Q Consensus 455 ~a~~~~g~~~~A~~~~~~~ 473 (623)
+.|-..|++.+|...+-+.
T Consensus 975 R~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 975 RMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHhhhhHHHHHHHHHHHHH
Confidence 9999999999777766654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0002 Score=70.69 Aligned_cols=222 Identities=15% Similarity=0.104 Sum_probs=154.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAK-KVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMT 329 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~-~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~ 329 (623)
-+-.+|...|.+...+.-.+.+-.+....+-.+......-++.++-+ ++.+.+......-+......-...|+..|+++
T Consensus 46 y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~d 125 (299)
T KOG3081|consen 46 YMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFD 125 (299)
T ss_pred HHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChH
Confidence 34556667777666555555555666666666666666666655544 55556655544545444455566789999999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 044791 330 DARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS----ADAIEEAFIHFESMK 405 (623)
Q Consensus 330 ~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~----~g~~e~A~~l~~~m~ 405 (623)
+|++..+... +..+.-.=+..+.+..++|-|...+++|.+.. +..|.+-|..++.+ .+.+.+|.-+|++|.
T Consensus 126 eAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s 200 (299)
T KOG3081|consen 126 EALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELS 200 (299)
T ss_pred HHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh
Confidence 9999998843 44444444556778889999999999999752 56777767666654 467999999999998
Q ss_pred hhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChh-HHHHHHHHHHhcCCC
Q 044791 406 SEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDID-LEDHAEELMVDLDPS 479 (623)
Q Consensus 406 ~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~-~A~~~~~~~~~m~~~ 479 (623)
. ...|+..+.+.+..++...|++++|+.++++++...+ +..+...+|..-...|.-. ...+....++...+.
T Consensus 201 ~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 201 E--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred c--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 4 4778888889999999999999999999999776444 5566666666655666653 234555555554444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.5e-05 Score=84.36 Aligned_cols=110 Identities=13% Similarity=0.119 Sum_probs=82.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCC
Q 044791 350 INGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGH 429 (623)
Q Consensus 350 i~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~ 429 (623)
|.+-....+|.+|+.+++.+..... -.--|..+.+-|+..|+++.|+++|-+.- .++--|++|.+.|+
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhcccc
Confidence 3345566778888888887776532 23347778888999999999999996532 24567999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 044791 430 LFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEE 471 (623)
Q Consensus 430 ~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~ 471 (623)
|+.|.++-++.++-+...+.|-+-..-+-++|++.+|+.++-
T Consensus 807 w~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 807 WEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 999999999967655566777777777888999886665543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00022 Score=71.24 Aligned_cols=243 Identities=15% Similarity=0.055 Sum_probs=163.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHc--CCCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHc
Q 044791 250 VADLARLCQEGKVKEAIELMDK--GVKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNK-VIEMYGKC 325 (623)
Q Consensus 250 ~~li~~~~~~g~~~~A~~l~~~--~~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~-Li~~y~k~ 325 (623)
.+.|-.+.+..++++|++++.. .-.| +....+.|..+|....++..|-+.|+++-. ..|...-|.. -...+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHh
Confidence 3666677888889999988843 2233 667788888888888888888888888766 3454444432 13345566
Q ss_pred CCHHHHHHHHHHhhc-----------------------------------CChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044791 326 GSMTDARRVFDHMAD-----------------------------------RSMDSWHLMINGYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 326 g~~~~A~~lf~~m~~-----------------------------------~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~ 370 (623)
+.+.+|++|...|.. .+..+-+.......+.|++++|.+-|++..
T Consensus 92 ~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 667777776666543 122244445555678999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-------------CCcc--------chhhHHHH------
Q 044791 371 KLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGIS-------------PGTE--------HYLGLVGV------ 423 (623)
Q Consensus 371 ~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~-------------p~~~--------ty~~Li~~------ 423 (623)
+-|---....||..+.- .+.|+.+.|+++..+++++ |++ +|+. +-+.|+.+
T Consensus 172 qvsGyqpllAYniALaH-y~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaA 249 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAA 249 (459)
T ss_pred hhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhh
Confidence 75544456788877754 4668999999999998876 543 2211 12233333
Q ss_pred -HHhcCCHHHHHHHHHhhCC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHH
Q 044791 424 -LGKCGHLFEAQQFIEQKLP----FEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAIS 498 (623)
Q Consensus 424 -~~k~g~~e~A~~lf~~~m~----~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~ 498 (623)
+.+.|+++.|.+-+-. |. .+-|.+|...+.-.-. .|++.+..+-+..+.++.|. . ..||..
T Consensus 250 Ieyq~~n~eAA~eaLtD-mPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf--P----------~ETFAN 315 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTD-MPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF--P----------PETFAN 315 (459)
T ss_pred hhhhcccHHHHHHHhhc-CCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC--C----------hHHHHH
Confidence 4566889999988888 75 3446677766543322 45555555666667776552 2 679999
Q ss_pred HhhhcCcccccc
Q 044791 499 ILDGKSRLVEFR 510 (623)
Q Consensus 499 li~~~~~~~~~~ 510 (623)
++-.||+..-|.
T Consensus 316 lLllyCKNeyf~ 327 (459)
T KOG4340|consen 316 LLLLYCKNEYFD 327 (459)
T ss_pred HHHHHhhhHHHh
Confidence 999999998873
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00018 Score=84.15 Aligned_cols=231 Identities=13% Similarity=0.146 Sum_probs=171.7
Q ss_pred CCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC---CCCC-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 044791 238 QCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG---VKAD-----ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIR 309 (623)
Q Consensus 238 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~---~~pd-----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~ 309 (623)
..++++.....|..-|.-....+++++|.+++++. +.+. ...|.++++.-..-|.-+...++|+++.+. .
T Consensus 1450 lvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--c 1527 (1710)
T KOG1070|consen 1450 LVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--C 1527 (1710)
T ss_pred HHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--c
Confidence 44555666667777888888999999999999763 2221 245777777666667788899999999884 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHH-HH
Q 044791 310 GDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN--EQTF-LA 383 (623)
Q Consensus 310 pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd--~~ty-~~ 383 (623)
--..+|..|...|.+.+..++|.++|+.|.++ ....|...+..+.+..+-++|..++.+.++. -|. .+-+ .-
T Consensus 1528 d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1528 DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISK 1605 (1710)
T ss_pred chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHH
Confidence 34678999999999999999999999999874 4458999999999999999999999998875 343 2211 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC--CCCC--HHHHHHHHHHHHH
Q 044791 384 VFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP--FEPT--AEFWEALRNYARI 459 (623)
Q Consensus 384 li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~--~~Pd--~~ty~~Li~a~~~ 459 (623)
.+..=.+.|+.+++..+|+.....+-- -...|+..|++-.+.|+.+.+..+|++++. +.+. -..|.--+..=..
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPK--RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPK--RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCcc--chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 222334679999999999999875322 456799999999999999999999999554 3332 2455655555556
Q ss_pred cCChhHHHHHHHHHH
Q 044791 460 HGDIDLEDHAEELMV 474 (623)
Q Consensus 460 ~g~~~~A~~~~~~~~ 474 (623)
+|+-+.++.+-.+..
T Consensus 1684 ~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1684 HGDEKNVEYVKARAK 1698 (1710)
T ss_pred cCchhhHHHHHHHHH
Confidence 677655544444433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.2e-05 Score=71.34 Aligned_cols=110 Identities=7% Similarity=-0.061 Sum_probs=61.9
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-
Q 044791 334 VFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP- 412 (623)
Q Consensus 334 lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p- 412 (623)
+|++..+.+...+..+..++...|++++|...|+....... .+..+|..+..++...|++++|+..|+...+ +.|
T Consensus 15 ~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~---l~p~ 90 (144)
T PRK15359 15 ILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALM---LDAS 90 (144)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCC
Confidence 44444444444444455556666666666666666655421 1445555666666666666666666666652 233
Q ss_pred CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 413 GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 413 ~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
+...+..+..++...|+.++|+..|++++...|+.
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 44555556666666666666666666655555544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00038 Score=72.38 Aligned_cols=159 Identities=12% Similarity=0.028 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHH---HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044791 309 RGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDS---WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVF 385 (623)
Q Consensus 309 ~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~t---yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li 385 (623)
.-|+.....+.+++...|+.++|+..|+.....|..+ ...-...+.+.|+++....+...+.... +-...-|..-+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 3345555555555555555555555555444333221 1111222344555555555444444321 11122222223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCh
Q 044791 386 SACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDI 463 (623)
Q Consensus 386 ~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~ 463 (623)
..+....+++.|+.+-+..+ .+.+ +...|-.-..++...|+.++|.--|+.+..+.| +..+|.-|+..|...|++
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I---~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCI---DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHh---ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 33334455555555554444 2222 122222222344455555555555555333343 445555555555555555
Q ss_pred hHHHHHHH
Q 044791 464 DLEDHAEE 471 (623)
Q Consensus 464 ~~A~~~~~ 471 (623)
.+|....+
T Consensus 385 kEA~~~An 392 (564)
T KOG1174|consen 385 KEANALAN 392 (564)
T ss_pred HHHHHHHH
Confidence 55544333
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00026 Score=74.10 Aligned_cols=192 Identities=9% Similarity=0.059 Sum_probs=137.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhhcC---ChHHHHHHHHHHHH
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG-SMTDARRVFDHMADR---SMDSWHLMINGYAD 355 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g-~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~ 355 (623)
+..+-.++...+..++|+.+++++++.. +-+..+|+....++.+.| ++++|+..++++.+. +..+|+.....+.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~ 118 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH
Confidence 3344445566788999999999999853 224567777777777777 689999999998764 44478777666677
Q ss_pred cCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhc---CC-
Q 044791 356 NGLG--DEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKC---GH- 429 (623)
Q Consensus 356 ~g~~--eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~---g~- 429 (623)
.|+. ++++.++++|.+...+ +..+|+...-++...|++++|++.++.+++. +. -+...|+....++.+. |.
T Consensus 119 l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d~-~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-DV-RNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-CC-CchhHHHHHHHHHHhccccccc
Confidence 7763 7889999999976433 6788888888888999999999999999954 32 2556676666555544 32
Q ss_pred ---HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcC----ChhHHHHHHHHHHh
Q 044791 430 ---LFEAQQFIEQKLPFEP-TAEFWEALRNYARIHG----DIDLEDHAEELMVD 475 (623)
Q Consensus 430 ---~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g----~~~~A~~~~~~~~~ 475 (623)
.++++++..+++...| |...|+.+...+...+ ...+|.+....+..
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 3467777766677677 5688998888887633 23335444444433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.7e-05 Score=83.39 Aligned_cols=153 Identities=14% Similarity=0.142 Sum_probs=78.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044791 316 NKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIE 395 (623)
Q Consensus 316 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e 395 (623)
-.+...+...|-..+|+.+|+++. .|.-+|.+|+..|+.++|..+...-.++ .||...|..+.+.....--+|
T Consensus 402 ~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHH
Confidence 345555666666666666666553 5555666666666666666665555542 556666666665555555555
Q ss_pred HHHHHHHHHHhhc-------------------------CCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-H
Q 044791 396 EAFIHFESMKSEF-------------------------GISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-E 448 (623)
Q Consensus 396 ~A~~l~~~m~~~~-------------------------g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ 448 (623)
+|+++++....+- .+.| -..+|-.+..+..+++++..|.+.|.......||- .
T Consensus 475 kawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~e 554 (777)
T KOG1128|consen 475 KAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAE 554 (777)
T ss_pred HHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchh
Confidence 5555554433210 1111 22334444444444555555555555534444432 4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 449 FWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 449 ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
.||+|-.+|.+.|+..+|...+....+
T Consensus 555 aWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred hhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 555555555555555544444443333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00021 Score=69.57 Aligned_cols=121 Identities=14% Similarity=0.188 Sum_probs=71.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHH-HhcCC--HH
Q 044791 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVL-GKCGH--LF 431 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~-~k~g~--~e 431 (623)
.++.++++..++..++.. ..|...|..+...|...|++++|...|+... .+.| +...+..+..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 445566666666655542 2255566666666666677777776666665 2334 444555555543 45555 36
Q ss_pred HHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 432 EAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 432 ~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
+|.+++++++...| +...+..|...+...|++++|+..++.+.++.+.+
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 67777766555555 44556666666666777777777777666665543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.2e-06 Score=55.68 Aligned_cols=34 Identities=29% Similarity=0.681 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE 378 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~ 378 (623)
+||+||.+|++.|++++|.++|++|++.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6889999999999999999999999988888873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.8e-05 Score=68.08 Aligned_cols=105 Identities=10% Similarity=-0.016 Sum_probs=68.7
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---Ch
Q 044791 267 ELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SM 343 (623)
Q Consensus 267 ~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~ 343 (623)
.+|++.+..+...+..+..++...|++++|.+.|+..+... +.+...|..+..++.+.|++++|+..|+...+. +.
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~ 92 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP 92 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 34444444444445556666777777777777777776643 235667777777777777777777777766653 34
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 344 DSWHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 344 ~tyn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
..+..+..++...|++++|+..|++..+.
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777777777777777777777777664
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.3e-05 Score=76.77 Aligned_cols=185 Identities=15% Similarity=0.123 Sum_probs=126.0
Q ss_pred HHHHHHHHc-CCHHHHHHHHHc----CCCCCH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 251 ADLARLCQE-GKVKEAIELMDK----GVKADA-SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 251 ~li~~~~~~-g~~~~A~~l~~~----~~~pd~-~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
.++..|... ++-+.++.-+++ ....+. ........++...|++++|++++... -+.......+.+|.+
T Consensus 70 ~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~ 143 (290)
T PF04733_consen 70 RLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLK 143 (290)
T ss_dssp HHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHH
Confidence 445555544 445556555543 222222 33333345677889999999988642 367888889999999
Q ss_pred cCCHHHHHHHHHHhhcCChH-HHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044791 325 CGSMTDARRVFDHMADRSMD-SWHLMINGYAD----NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~~~~~-tyn~Li~~~~~----~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~ 399 (623)
.+++|.|.+.|+.|.+-+.. +-..|..+++. .+.+.+|+-+|+|+.+. ..++..+.+.+..++...|++++|.+
T Consensus 144 ~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~ 222 (290)
T PF04733_consen 144 MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEE 222 (290)
T ss_dssp TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999864332 33334444332 34699999999998654 66788999999999999999999999
Q ss_pred HHHHHHhhcCCCC-CccchhhHHHHHHhcCCH-HHHHHHHHhhCC-CCCC
Q 044791 400 HFESMKSEFGISP-GTEHYLGLVGVLGKCGHL-FEAQQFIEQKLP-FEPT 446 (623)
Q Consensus 400 l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~-e~A~~lf~~~m~-~~Pd 446 (623)
++.+... ..| +..+...+|.+....|+. +.+.+++.+ +. ..|+
T Consensus 223 ~L~~al~---~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q-L~~~~p~ 268 (290)
T PF04733_consen 223 LLEEALE---KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ-LKQSNPN 268 (290)
T ss_dssp HHHHHCC---C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH-CHHHTTT
T ss_pred HHHHHHH---hccCCHHHHHHHHHHHHHhCCChhHHHHHHHH-HHHhCCC
Confidence 9998763 334 456667778777788887 778888888 54 3343
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00017 Score=77.08 Aligned_cols=127 Identities=14% Similarity=0.119 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD 392 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g 392 (623)
....+|+..+...++++.|+.+|+++.+.+....-.|+..+...++..+|++++++.++.. .-|......-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 4445667777778899999999999988887777788888888889999999999988652 235566666667788899
Q ss_pred CHHHHHHHHHHHHhhcCCCCC-ccchhhHHHHHHhcCCHHHHHHHHHhhCCCC
Q 044791 393 AIEEAFIHFESMKSEFGISPG-TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE 444 (623)
Q Consensus 393 ~~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~ 444 (623)
+.+.|+.+.+++. .+.|+ ..+|..|..+|.+.|++++|+..++. +...
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs-~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNS-CPML 297 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc-CcCC
Confidence 9999999999888 55674 56899999999999999999988888 6633
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00065 Score=78.11 Aligned_cols=131 Identities=8% Similarity=-0.036 Sum_probs=80.4
Q ss_pred CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC---hHHHHH
Q 044791 273 VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD-LVLNNKVIEMYGKCGSMTDARRVFDHMADRS---MDSWHL 348 (623)
Q Consensus 273 ~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~---~~tyn~ 348 (623)
...+...+-.|..+....|.+++|+.+++...+ +.|| ......++.++.+.+++++|+..+++....+ ....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 334455666666666666666777666666666 3343 4455556666666666666666666665432 235555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
+..++.+.|++++|+++|++....+. -+..++..+..++-+.|+.++|...|+....
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666677666666666321 1355666666666666666666666666664
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00035 Score=80.24 Aligned_cols=164 Identities=6% Similarity=0.034 Sum_probs=112.1
Q ss_pred ccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCCH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC
Q 044791 234 NNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKADA-SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRG 310 (623)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd~-~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p 310 (623)
.+..+.+.-..+...+..|.....+.|++++|+.+++. .+.||. .....++.++.+.+++++|+..+++.+.... -
T Consensus 74 ~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~ 152 (694)
T PRK15179 74 ELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-S 152 (694)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-C
Confidence 33333333333445555666677788888888888875 566765 4566777788888888888888888887542 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMADRS---MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a 387 (623)
+......+..++.+.|+.++|+.+|++....+ ..++..+..++-+.|+.++|...|++..+. ..+.+..|+..+
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~-- 229 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL-- 229 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH--
Confidence 56777778888888888888888888887543 347777888888888888888888888764 234445555554
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 044791 388 CGSADAIEEAFIHFESMK 405 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~ 405 (623)
+++..-+.+++++.
T Consensus 230 ----~~~~~~~~~~~~~~ 243 (694)
T PRK15179 230 ----VDLNADLAALRRLG 243 (694)
T ss_pred ----HHHHHHHHHHHHcC
Confidence 33344445555554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00065 Score=66.16 Aligned_cols=152 Identities=7% Similarity=-0.003 Sum_probs=106.0
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044791 253 LARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR 332 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~ 332 (623)
+..|...|+++.+..-.+....|. ..+...++.+++...++..++.. +.|...|..|...|...|++++|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888887644432211111 12223566777877787777754 447888888888888999999999
Q ss_pred HHHHHhhc---CChHHHHHHHHHH-HHcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 333 RVFDHMAD---RSMDSWHLMINGY-ADNGL--GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 333 ~lf~~m~~---~~~~tyn~Li~~~-~~~g~--~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
..|++..+ .+...|..+..++ ...|+ .++|.++|++.++.+.. +..++..+..++.+.|++++|+..|+++.+
T Consensus 94 ~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 94 LAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99887765 3555777777764 66677 48899999888886433 567777788888888999999999988884
Q ss_pred hcCCCCCccc
Q 044791 407 EFGISPGTEH 416 (623)
Q Consensus 407 ~~g~~p~~~t 416 (623)
...|+..-
T Consensus 173 --l~~~~~~r 180 (198)
T PRK10370 173 --LNSPRVNR 180 (198)
T ss_pred --hCCCCccH
Confidence 33444433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=1e-05 Score=54.54 Aligned_cols=33 Identities=30% Similarity=0.676 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 044791 344 DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP 376 (623)
Q Consensus 344 ~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P 376 (623)
.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00079 Score=80.87 Aligned_cols=260 Identities=8% Similarity=0.009 Sum_probs=169.4
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCC-------CC--
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGV-------KA-- 275 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~-------~p-- 275 (623)
..|++++|...+++.... .+..... ......+.+...+...|++++|...+++.+ .+
T Consensus 464 ~~g~~~~A~~~~~~al~~--~~~~~~~------------~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~ 529 (903)
T PRK04841 464 NDGDPEEAERLAELALAE--LPLTWYY------------SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHY 529 (903)
T ss_pred hCCCHHHHHHHHHHHHhc--CCCccHH------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHH
Confidence 689999999999977331 1110000 011223455666778999999999886422 11
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-------
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQS----TIR--G-DLVLNNKVIEMYGKCGSMTDARRVFDHMADR------- 341 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~--p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~------- 341 (623)
...++..+..++...|++++|...+++.... |.. + ...++..+...+...|++++|...+++....
T Consensus 530 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 609 (903)
T PRK04841 530 ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ 609 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence 1235566777888999999999999887653 221 1 2344556677788889999999999876431
Q ss_pred -ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc
Q 044791 342 -SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTF-----LAVFSACGSADAIEEAFIHFESMKSEFGISPGT 414 (623)
Q Consensus 342 -~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty-----~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~ 414 (623)
....+..+...+...|++++|...++++....-.. ....+ ...+..+...|+.+.|...+...... ......
T Consensus 610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~ 688 (903)
T PRK04841 610 QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNH 688 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccch
Confidence 12256667778889999999999999886531111 11111 11224455689999999998775531 111110
Q ss_pred ---cchhhHHHHHHhcCCHHHHHHHHHhhCC------CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 415 ---EHYLGLVGVLGKCGHLFEAQQFIEQKLP------FEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 415 ---~ty~~Li~~~~k~g~~e~A~~lf~~~m~------~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
..+..+..++...|+.++|..++++++. ...+ ..+...+..++...|+.+.|...+....++...
T Consensus 689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 1134566778889999999999998443 1111 245666677888999999999998888876644
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.001 Score=67.79 Aligned_cols=225 Identities=14% Similarity=0.144 Sum_probs=142.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHH---HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHc
Q 044791 250 VADLARLCQEGKVKEAIELMDKGVKADASCFYTLFE---LCGNPKWYENAKKVHDYFLQSTIRGDLVLNNK-VIEMYGKC 325 (623)
Q Consensus 250 ~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~---~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~-Li~~y~k~ 325 (623)
.-|...+...|.+.+|+.-|...+..|+..|-++.+ .|...|+-..|+.=+.+.++ ++||-..-.. -...+.+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhc
Confidence 356777888899999999998888877777766654 56667777777777777777 5676432221 24556788
Q ss_pred CCHHHHHHHHHHhhcCCh----H------------HH--HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 326 GSMTDARRVFDHMADRSM----D------------SW--HLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~~~----~------------ty--n~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a 387 (623)
|.++.|..=|+.+...+. + .| ...+..+.-.|+...|+.+...+++.. .-|+..|..-..+
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKC 198 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHH
Confidence 888888888887765322 0 12 223444556778888888888877741 2255566666677
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHH----HHHHH-------HH-
Q 044791 388 CGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAE----FWEAL-------RN- 455 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~----ty~~L-------i~- 455 (623)
|...|++..|+.=+....+ =-..+..++--+-..+...|+.+.++...++.+.+.||-. .|..| .+
T Consensus 199 ~i~~~e~k~AI~Dlk~ask--Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASK--LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HHhcCcHHHHHHHHHHHHh--ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 7777887777765544431 1122344555556667777777777777777666666542 12111 11
Q ss_pred -HHHHcCChhHHHHHHHHHHhcCCC
Q 044791 456 -YARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 456 -a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
.....+++-++.+..+.+.+.++.
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~ 301 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPE 301 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCc
Confidence 234456666666666666666655
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0037 Score=68.62 Aligned_cols=332 Identities=15% Similarity=0.133 Sum_probs=192.7
Q ss_pred cccccc-----cCCChHHHHHHHHHhcCCC-CCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc-
Q 044791 199 NQWNNQ-----QNQGYPQARNSYQQVSPGH-QIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK- 271 (623)
Q Consensus 199 ~~w~~~-----~~g~~~~A~~lf~~m~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~- 271 (623)
..|.+. -.|++..|.++.+...... ..|+...+-.+ ....-......+.|.+++|++-+.+
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~s------------e~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHS------------ELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHH------------HHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 356655 6789999999988774322 11221111100 1111224456788999999998853
Q ss_pred -CCCCCHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHHHHH-HHHHHhhcCC---hH
Q 044791 272 -GVKADASCF-YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNN-KVIEMYGKCGSMTDAR-RVFDHMADRS---MD 344 (623)
Q Consensus 272 -~~~pd~~ty-~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~-~Li~~y~k~g~~~~A~-~lf~~m~~~~---~~ 344 (623)
.-..|-..| .+-...+.+.+++++|..++..++.. .||..-|. .+..++.+..+.-+++ .+|....+.- ..
T Consensus 212 e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~ 289 (700)
T KOG1156|consen 212 EKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC 289 (700)
T ss_pred hhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc
Confidence 333444443 35566778899999999999999985 46655554 4555555454444555 6776664321 00
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---cCC----------C
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSE---FGI----------S 411 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~---~g~----------~ 411 (623)
.-..=++.+-...-.+..-+++..+.+.|+.+ ++..+..-|-.-...+--+++.-.+... .|. .
T Consensus 290 p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 290 PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred chhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 00000111111112233445666777888764 3344444433322222122222222210 011 2
Q ss_pred CCcc--chhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCC
Q 044791 412 PGTE--HYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAE-FWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPT 488 (623)
Q Consensus 412 p~~~--ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~-ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~ 488 (623)
|... ++-.++..|-+.|+++.|+.+++.+++..|+.+ .|-+-.+.+...|+++.|...++...+|+..+.-
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~------ 440 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA------ 440 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH------
Confidence 3333 344567788899999999999999999888874 5666667888999999999999999998876554
Q ss_pred CCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHH---HHHHHHHHHHhHHHHHHhc
Q 044791 489 PPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQE---AKEQALLYHSERLAIAYGL 565 (623)
Q Consensus 489 ~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~---~k~~~~~~~~g~l~~A~~l 565 (623)
.|..+..-+|.+ .+ +++|.++.....+.|. +..-..+.+.-. ...+..+.+.+++.+|+.-
T Consensus 441 --INsKcAKYmLrA----n~--------i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKk 504 (700)
T KOG1156|consen 441 --INSKCAKYMLRA----NE--------IEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKK 504 (700)
T ss_pred --HHHHHHHHHHHc----cc--------cHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHH
Confidence 444555555543 32 3688888877776665 333333333210 1233456677788888765
Q ss_pred ccCC
Q 044791 566 ISTP 569 (623)
Q Consensus 566 l~~m 569 (623)
+...
T Consensus 505 fh~i 508 (700)
T KOG1156|consen 505 FHEI 508 (700)
T ss_pred HhhH
Confidence 5443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00043 Score=80.47 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcCC--CCCHH-HHHHHHHHHhCCCCHHHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKGV--KADAS-CFYTLFELCGNPKWYENAKKV 299 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~~--~pd~~-ty~~Ll~~~~~~g~~~~A~~l 299 (623)
..+..||..|...+++++|.++.+..+ .|+.. .|-.+...+...++.+.|..+
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv 87 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL 87 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh
Confidence 345588888999999999999987533 34432 233333355555655555444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00067 Score=66.99 Aligned_cols=155 Identities=15% Similarity=0.037 Sum_probs=115.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcC
Q 044791 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNG 357 (623)
Q Consensus 281 ~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g 357 (623)
..+-..+.-.|+-+.+..+....... ...|....+.++....+.|++.+|+.+|.+... .|...|+.+..+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 55666777777777777776664432 344667777788888888888888888888765 46668888888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHH
Q 044791 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFI 437 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf 437 (623)
++++|..-|.+..+.... +...+|.|.-.+.-.|+.+.|..++...... -.-|..+-..|.-+....|++++|+.+.
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 888888888888775222 4466777777777788888888888877643 2225666677788888888888888887
Q ss_pred Hh
Q 044791 438 EQ 439 (623)
Q Consensus 438 ~~ 439 (623)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 76
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00086 Score=69.14 Aligned_cols=197 Identities=14% Similarity=0.088 Sum_probs=121.1
Q ss_pred HHHHHHcCCHHHHHHHHHc--------CCCCC-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCCC--HHHHHH
Q 044791 253 LARLCQEGKVKEAIELMDK--------GVKAD-ASCFYTLFELCGNPKWYENAKKVHDYFLQS----TIRGD--LVLNNK 317 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~--------~~~pd-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~pd--~~~y~~ 317 (623)
...|...|++++|.+.|.+ +-..+ ...|.....+|.+. ++++|++++++.... |- ++ ..++..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~-~~~aA~~~~~ 119 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR-FSQAAKCLKE 119 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 5578888999999988853 11111 13455655565554 888999888887653 31 22 456777
Q ss_pred HHHHHHHc-CCHHHHHHHHHHhhc----CCh-----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-----CCHH-HH
Q 044791 318 VIEMYGKC-GSMTDARRVFDHMAD----RSM-----DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ-----PNEQ-TF 381 (623)
Q Consensus 318 Li~~y~k~-g~~~~A~~lf~~m~~----~~~-----~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~-----Pd~~-ty 381 (623)
+...|-.. |++++|++.|++..+ .+. .++..+...+.+.|++++|+++|++....-+. .++. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 88888888 899999999887653 121 26777888899999999999999988765332 2222 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc-CCCCC--ccchhhHHHHHHh--cCCHHHHHHHHHhhCCCCCCHHHHHHH
Q 044791 382 LAVFSACGSADAIEEAFIHFESMKSEF-GISPG--TEHYLGLVGVLGK--CGHLFEAQQFIEQKLPFEPTAEFWEAL 453 (623)
Q Consensus 382 ~~li~a~~~~g~~e~A~~l~~~m~~~~-g~~p~--~~ty~~Li~~~~k--~g~~e~A~~lf~~~m~~~Pd~~ty~~L 453 (623)
...+-++...||...|.+.|++..... ++..+ ......||.+|-. ...+.+|+.-|+. +. +.|..--..|
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~-~~-~ld~w~~~~l 274 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS-IS-RLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT-SS----HHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc-cC-ccHHHHHHHH
Confidence 344445666789999999998877321 12111 2334456666654 4568888888888 54 3344333333
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00033 Score=64.53 Aligned_cols=122 Identities=13% Similarity=0.064 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCChH------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMADRSMD------SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE--QTFLAVF 385 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~------tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~--~ty~~li 385 (623)
.|..++..+ ..++..++...++.+.+.... ..-.+...+...|++++|...|++..+....++. .....|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 255555555555555432111 2222334455666666666666666655422221 2233344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 386 SACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 386 ~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
..+...|++++|+.+++.... -......+..+.++|.+.|+.++|...|++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD---EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC---cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555566666666666644321 112233444555666666666666666654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00044 Score=77.09 Aligned_cols=286 Identities=15% Similarity=0.155 Sum_probs=176.9
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CC--------CCCHHHHHHHHHHHHHc
Q 044791 255 RLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQS-TI--------RGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 255 ~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-g~--------~pd~~~y~~Li~~y~k~ 325 (623)
.|...|+.|+|++-.+. .-+...|..|.+.|.+..++|-|.-.+..|... |. .++ .+-..+.-.....
T Consensus 737 fyvtiG~MD~AfksI~~--IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQF--IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred EEEEeccHHHHHHHHHH--HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 36678999998876543 224467999999999999999888887777542 21 222 2223333444577
Q ss_pred CCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-
Q 044791 326 GSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESM- 404 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m- 404 (623)
|.+++|+.+|++-+. |..|=+.|-..|.+++|+++-+.=-...+ ..||..-...+...++++.|++.|+..
T Consensus 814 gMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred hhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 999999999998875 44556678889999999987665333222 246666666677788899999888742
Q ss_pred ---------Hhhc--------CCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 044791 405 ---------KSEF--------GISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLED 467 (623)
Q Consensus 405 ---------~~~~--------g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~ 467 (623)
..++ ...-|...|..-..-+-..|++|.|+.+|.. - .-|-++++..|-.|+.++|.
T Consensus 886 ~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~-A------~D~fs~VrI~C~qGk~~kAa 958 (1416)
T KOG3617|consen 886 VHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS-A------KDYFSMVRIKCIQGKTDKAA 958 (1416)
T ss_pred ChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH-h------hhhhhheeeEeeccCchHHH
Confidence 2211 1112333344444444457888888888887 2 24667888888889998666
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHH
Q 044791 468 HAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEA 547 (623)
Q Consensus 468 ~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~ 547 (623)
++.+.- -|......+-..|-..|++. +|+.+|.+-.. +...|. .+
T Consensus 959 ~iA~es-----------------gd~AAcYhlaR~YEn~g~v~--------~Av~FfTrAqa---------fsnAIR-lc 1003 (1416)
T KOG3617|consen 959 RIAEES-----------------GDKAACYHLARMYENDGDVV--------KAVKFFTRAQA---------FSNAIR-LC 1003 (1416)
T ss_pred HHHHhc-----------------ccHHHHHHHHHHhhhhHHHH--------HHHHHHHHHHH---------HHHHHH-HH
Confidence 555532 23445556667777778774 88888844321 111121 11
Q ss_pred HHH---------HHHHHHhHHHHHHhcccCCCCChhHHHhhHhhhcchhHHHHHH
Q 044791 548 KEQ---------ALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIM 593 (623)
Q Consensus 548 k~~---------~~~~~~g~l~~A~~ll~~m~~~~~~i~~~l~~~g~~~~a~~l~ 593 (623)
|+. .+......+.+|-.++++....-.+.+-.|.++|..+.|+++.
T Consensus 1004 KEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 1004 KENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred HhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHH
Confidence 111 1222334444555566655544344455566667766666543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0023 Score=63.33 Aligned_cols=157 Identities=14% Similarity=0.096 Sum_probs=125.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a 387 (623)
|..+ ..+-..+.-.|+-+.+..+...... .|....+.++....+.|++.+|+..|.+.... -.+|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHH
Confidence 4444 6677888888998888888877543 35556777999999999999999999999875 35588999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChhH
Q 044791 388 CGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-FEPTAEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-~~Pd~~ty~~Li~a~~~~g~~~~ 465 (623)
|-+.|+.++|..-|.+.. .+.+ +...+|.|.-.|.-.|+.+.|..++...-. -..|...-..|..+....|++++
T Consensus 144 ldq~Gr~~~Ar~ay~qAl---~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 144 LDQLGRFDEARRAYRQAL---ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHccChhHHHHHHHHHH---HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 999999999999998887 3444 456788888889999999999999998332 23377777888888889999997
Q ss_pred HHHHHHH
Q 044791 466 EDHAEEL 472 (623)
Q Consensus 466 A~~~~~~ 472 (623)
|+.+...
T Consensus 221 A~~i~~~ 227 (257)
T COG5010 221 AEDIAVQ 227 (257)
T ss_pred HHhhccc
Confidence 7766553
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.014 Score=59.84 Aligned_cols=208 Identities=12% Similarity=0.048 Sum_probs=131.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 044791 316 NKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGL-------GDEGLQLFEQMRKLGLQPNEQ-TFLAVFSA 387 (623)
Q Consensus 316 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~-------~eeA~~l~~eM~~~g~~Pd~~-ty~~li~a 387 (623)
-.|+--|.+.+++.+|..+.+++.-....-|-.-...++..|+ ..-|...|.-.-+.+..-|.+ ---++..+
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 3566778899999999998877754443333333333444443 445666665554555554443 23455556
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC-C-CCCHHHHHHHH-HHHHHcCChh
Q 044791 388 CGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-F-EPTAEFWEALR-NYARIHGDID 464 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-~-~Pd~~ty~~Li-~a~~~~g~~~ 464 (623)
+.-...+|+.+-.+..++.- =..-|...| .+..+++..|.+.+|+++|-+ +. - -.|..+|.+++ ++|.+.+..+
T Consensus 369 fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~-is~~~ikn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIR-ISGPEIKNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhh-hcChhhhhhHHHHHHHHHHHHhcCCch
Confidence 66667888888888887743 333344444 468899999999999999998 43 1 13566776655 5788899998
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHH-HHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeecc
Q 044791 465 LEDHAEELMVDLDPSKADPKKIPTPPPKKRTAI-SILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDI 543 (623)
Q Consensus 465 ~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~-~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li 543 (623)
-+|+.|..++..+. ..... .+-..|.+.+.| --|-+.|+++... -|+..-|..--
T Consensus 446 ---lAW~~~lk~~t~~e-----------~fsLLqlIAn~CYk~~eF--------yyaaKAFd~lE~l--DP~pEnWeGKR 501 (557)
T KOG3785|consen 446 ---LAWDMMLKTNTPSE-----------RFSLLQLIANDCYKANEF--------YYAAKAFDELEIL--DPTPENWEGKR 501 (557)
T ss_pred ---HHHHHHHhcCCchh-----------HHHHHHHHHHHHHHHHHH--------HHHHHhhhHHHcc--CCCccccCCcc
Confidence 67777777765432 22332 333457777776 2666667665543 47777777666
Q ss_pred CHHHHHH
Q 044791 544 DQEAKEQ 550 (623)
Q Consensus 544 ~~~~k~~ 550 (623)
++|+...
T Consensus 502 GACaG~f 508 (557)
T KOG3785|consen 502 GACAGLF 508 (557)
T ss_pred chHHHHH
Confidence 6555444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0026 Score=72.62 Aligned_cols=208 Identities=13% Similarity=0.065 Sum_probs=117.2
Q ss_pred HHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 257 CQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFD 336 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~ 336 (623)
...+.+++|+.+|++ ...+..+.+.||.- .+.+|.|.++-++. . ...+|+-|..+=.+.|.+.+|++-|-
T Consensus 1059 i~~~LyEEAF~ifkk-f~~n~~A~~VLie~---i~~ldRA~efAe~~-----n-~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKK-FDMNVSAIQVLIEN---IGSLDRAYEFAERC-----N-EPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred hhhhHHHHHHHHHHH-hcccHHHHHHHHHH---hhhHHHHHHHHHhh-----C-ChHHHHHHHHHHHhcCchHHHHHHHH
Confidence 344455556555544 22333444444432 23455555544432 1 23456666666666666666666552
Q ss_pred HhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccc
Q 044791 337 HMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEH 416 (623)
Q Consensus 337 ~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~t 416 (623)
+..|...|.-+|....+.|.||+-.+.+...+++.-+|.+.+ .||-+|++.+++.+.++++ ..|+...
T Consensus 1129 --kadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi--------~gpN~A~ 1196 (1666)
T KOG0985|consen 1129 --KADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI--------AGPNVAN 1196 (1666)
T ss_pred --hcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh--------cCCCchh
Confidence 334555666666666666766666666665555555554433 4566666666665544333 1244444
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhH
Q 044791 417 YLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTA 496 (623)
Q Consensus 417 y~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~ 496 (623)
.-.+.+-|...|.++.|.-+|.. +..|..|...+...|++..|....++. -+..||
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~-------vSN~a~La~TLV~LgeyQ~AVD~aRKA-----------------ns~ktW 1252 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN-------VSNFAKLASTLVYLGEYQGAVDAARKA-----------------NSTKTW 1252 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhhhc-----------------cchhHH
Confidence 45555666666666666655554 345667777777778877555555443 224566
Q ss_pred HHHhhhcCcccccc
Q 044791 497 ISILDGKSRLVEFR 510 (623)
Q Consensus 497 ~~li~~~~~~~~~~ 510 (623)
.-+-.+|...++|+
T Consensus 1253 K~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFR 1266 (1666)
T ss_pred HHHHHHHhchhhhh
Confidence 66666777766664
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0035 Score=67.53 Aligned_cols=132 Identities=17% Similarity=0.163 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchh
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFL-------AVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYL 418 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~-------~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~ 418 (623)
++....+|...|++.++..+-+..++.|-. ...-|+ .+..+|.+.++++.|...|.+.... ...|+..+-.
T Consensus 260 ~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte-~Rt~~~ls~l 337 (539)
T KOG0548|consen 260 LNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE-HRTPDLLSKL 337 (539)
T ss_pred HHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh-hcCHHHHHHH
Confidence 344444566666666666655555554422 111222 2334566677888888888877655 3333332111
Q ss_pred h-------------------------HHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 044791 419 G-------------------------LVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEEL 472 (623)
Q Consensus 419 ~-------------------------Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~ 472 (623)
. =...+.+.|++.+|+..|.+++...| |...|.....+|.+.|.+..|.+-.+.
T Consensus 338 k~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~ 417 (539)
T KOG0548|consen 338 KEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKK 417 (539)
T ss_pred HHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 0 12346677899999999999666566 567888888899999999988888888
Q ss_pred HHhcCCC
Q 044791 473 MVDLDPS 479 (623)
Q Consensus 473 ~~~m~~~ 479 (623)
..++++.
T Consensus 418 ~ieL~p~ 424 (539)
T KOG0548|consen 418 CIELDPN 424 (539)
T ss_pred HHhcCch
Confidence 8887654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0046 Score=74.31 Aligned_cols=262 Identities=13% Similarity=-0.015 Sum_probs=165.9
Q ss_pred HHHHHcCCHHHHHHHHHcCCC--C--CH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHH
Q 044791 254 ARLCQEGKVKEAIELMDKGVK--A--DA----SCFYTLFELCGNPKWYENAKKVHDYFLQS----TI-RGDLVLNNKVIE 320 (623)
Q Consensus 254 ~~~~~~g~~~~A~~l~~~~~~--p--d~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~-~pd~~~y~~Li~ 320 (623)
..+...|++++|...+++.+. + +. .+.+.+..++...|++++|...+.+.... |- .....++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 345578999999998865221 2 11 34566677788899999999999888753 21 111345566777
Q ss_pred HHHHcCCHHHHHHHHHHhhcC-------C----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCC--CHHHHHHHH
Q 044791 321 MYGKCGSMTDARRVFDHMADR-------S----MDSWHLMINGYADNGLGDEGLQLFEQMRKLG--LQP--NEQTFLAVF 385 (623)
Q Consensus 321 ~y~k~g~~~~A~~lf~~m~~~-------~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g--~~P--d~~ty~~li 385 (623)
.+...|++++|...+++.... + ...+..+...+...|++++|...+++..... ..+ ...++..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 888999999999998876431 1 1245556667788899999999999886531 112 234455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCCccchh-----hHHHHHHhcCCHHHHHHHHHhhCCCC-CCH----HHHHHHHH
Q 044791 386 SACGSADAIEEAFIHFESMKSEFGISPGTEHYL-----GLVGVLGKCGHLFEAQQFIEQKLPFE-PTA----EFWEALRN 455 (623)
Q Consensus 386 ~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~-----~Li~~~~k~g~~e~A~~lf~~~m~~~-Pd~----~ty~~Li~ 455 (623)
..+...|+.++|.+.++.+..-.........+. ..+..+...|+.++|.+++....... ... ..+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 677889999999999988764211111111111 12244456899999999998822211 111 12445666
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCc-hhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHC
Q 044791 456 YARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPK-KRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKES 530 (623)
Q Consensus 456 a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~-~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~ 530 (623)
++...|+.++|...++...+....... ..+ ..+...+-.++.+.|+. ++|...|.+..+.
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~-------~~~~a~~~~~la~a~~~~G~~--------~~A~~~L~~Al~l 760 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRL-------MSDLNRNLILLNQLYWQQGRK--------SEAQRVLLEALKL 760 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCc-------hHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHH
Confidence 788999999998888887765322111 011 12333444456667765 5888887555443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0053 Score=67.35 Aligned_cols=263 Identities=14% Similarity=0.142 Sum_probs=153.9
Q ss_pred cccccc---cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCCC
Q 044791 199 NQWNNQ---QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKA 275 (623)
Q Consensus 199 ~~w~~~---~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~p 275 (623)
..|..- ..|+..+-+..|.+..+ ...|.+..- ..-..+..+...|-..|+++.|..+|+++.+.
T Consensus 350 ~eW~kRV~l~e~~~~~~i~tyteAv~-~vdP~ka~G------------s~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 350 EEWHKRVKLYEGNAAEQINTYTEAVK-TVDPKKAVG------------SPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHHhhhhhhcCChHHHHHHHHHHHH-ccCcccCCC------------ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 356533 67888888888887622 022221110 01123446677788899999999999987765
Q ss_pred CHHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHcCCC-----------------CCHHHHHHHHHHHHHcCCHHHH
Q 044791 276 DASCFYTLFE-------LCGNPKWYENAKKVHDYFLQSTIR-----------------GDLVLNNKVIEMYGKCGSMTDA 331 (623)
Q Consensus 276 d~~ty~~Ll~-------~~~~~g~~~~A~~l~~~m~~~g~~-----------------pd~~~y~~Li~~y~k~g~~~~A 331 (623)
.-.+-+-|.. .=.+..+++.|++++++....--. .+..+|...++.--..|-++..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 5444333333 334556788888888776532111 1234555566666677888888
Q ss_pred HHHHHHhhcCChHHHHHHHHH---HHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHH
Q 044791 332 RRVFDHMADRSMDSWHLMING---YADNGLGDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGS---ADAIEEAFIHFESM 404 (623)
Q Consensus 332 ~~lf~~m~~~~~~tyn~Li~~---~~~~g~~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~---~g~~e~A~~l~~~m 404 (623)
..+|++|.+.-+.|=-++|+- +-.+.-+++++++|++-...---|++ ..|++.+.-+.+ ...+|.|..+|+..
T Consensus 497 k~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 497 KAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 888888876544432222221 33445578888888765544333444 245554444433 34789999999998
Q ss_pred HhhcCCCCCccchhhHHHHH--HhcCCHHHHHHHHHhhC-CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 405 KSEFGISPGTEHYLGLVGVL--GKCGHLFEAQQFIEQKL-PFEPT--AEFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 405 ~~~~g~~p~~~ty~~Li~~~--~k~g~~e~A~~lf~~~m-~~~Pd--~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
.+ |+.|...-+--|+-+- -+.|....|+.+|+++- .+++. ...||..|.--+..=-+-.-.+++++..+.
T Consensus 577 L~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 577 LD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred Hh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 85 7776543322222221 23588888999998832 23332 257887777444333333344566655554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0057 Score=65.37 Aligned_cols=114 Identities=20% Similarity=0.137 Sum_probs=49.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccchhhHHHHHHhcCCHH
Q 044791 354 ADNGLGDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 354 ~~~g~~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~~k~g~~e 431 (623)
...|++++|+..++.+... .||. +-.......+.+.++.++|.+.++.+. ...|+ ....-.+..+|.+.|+..
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHhcCChH
Confidence 3444455555555554433 2322 222233334444555555555555444 22333 223333444455555555
Q ss_pred HHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 044791 432 EAQQFIEQKLP-FEPTAEFWEALRNYARIHGDIDLEDHAEEL 472 (623)
Q Consensus 432 ~A~~lf~~~m~-~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~ 472 (623)
+|+.++++... ..-|...|..|..+|...|+..++..+..+
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 55555544222 122344555555555555554444444433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.2e-05 Score=51.52 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCH
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDL 312 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 312 (623)
+||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999998873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.8e-05 Score=51.11 Aligned_cols=30 Identities=33% Similarity=0.761 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGL 374 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~ 374 (623)
+||+||++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 566666666666666666666666665553
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.012 Score=67.02 Aligned_cols=223 Identities=13% Similarity=0.072 Sum_probs=150.1
Q ss_pred ccccccCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHH--HHcCCHHHHHHHHHc--CCCC
Q 044791 200 QWNNQQNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARL--CQEGKVKEAIELMDK--GVKA 275 (623)
Q Consensus 200 ~w~~~~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~l~~~--~~~p 275 (623)
-|-++..+++.+|......+.+ ..|+ ..+...+.++ .|.|+.++|..+++. +..+
T Consensus 16 i~d~ld~~qfkkal~~~~kllk--k~Pn-------------------~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~ 74 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLK--KHPN-------------------ALYAKVLKALSLFRLGKGDEALKLLEALYGLKG 74 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHH--HCCC-------------------cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC
Confidence 4777788999999999998743 2233 2233455655 589999999999974 3333
Q ss_pred -CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHhhcCChHHHHHHH
Q 044791 276 -DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTD----ARRVFDHMADRSMDSWHLMI 350 (623)
Q Consensus 276 -d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~----A~~lf~~m~~~~~~tyn~Li 350 (623)
|..|...+-.+|.+.++.++|..+|++... .-|+......+..+|.|.+++.+ |++++....+.--.-|+++
T Consensus 75 ~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~- 151 (932)
T KOG2053|consen 75 TDDLTLQFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI- 151 (932)
T ss_pred CchHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-
Confidence 778999999999999999999999999987 45677777788889999888764 6677765554444455543
Q ss_pred HHHHH-cCC---------hHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhh
Q 044791 351 NGYAD-NGL---------GDEGLQLFEQMRKLG-LQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLG 419 (623)
Q Consensus 351 ~~~~~-~g~---------~eeA~~l~~eM~~~g-~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~ 419 (623)
+.+.. ... ..-|.++++.+++.+ -.-+..-...-+..+-..|++++|++++..-..+.-..-+...-+.
T Consensus 152 Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~ 231 (932)
T KOG2053|consen 152 SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENK 231 (932)
T ss_pred HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHH
Confidence 33222 111 234566777777554 2222333333344556789999999999544333122334444456
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 044791 420 LVGVLGKCGHLFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 420 Li~~~~k~g~~e~A~~lf~~~m~~~Pd 446 (623)
-++.+...+++.+..++-.+.+...+|
T Consensus 232 ~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 232 KLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 678888999999988887774444455
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0024 Score=69.43 Aligned_cols=288 Identities=14% Similarity=0.125 Sum_probs=170.7
Q ss_pred cCCChHHHHHHHHHhcCCCCCC-------CccCCc--cc--cccCCCCC-CCCchHHHHHHHHHHHcCCHHHHHHHHHcC
Q 044791 205 QNQGYPQARNSYQQVSPGHQIP-------NQLNNV--PN--NMNQCPAG-DQVLPPSVADLARLCQEGKVKEAIELMDKG 272 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p-------~~~~~~--~~--~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~~ 272 (623)
+.|+|++|.++|+.+.+..... +.+... .. +....+.. +.+...+.+.-..+...|++.+|++++++.
T Consensus 122 rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 122 RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 8999999999999884432211 000000 00 11111111 224445556677788999999999998531
Q ss_pred -----------------CCCCHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHH-
Q 044791 273 -----------------VKADASC-FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDL----VLNNKVIEMYGKCGSMT- 329 (623)
Q Consensus 273 -----------------~~pd~~t-y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~y~~Li~~y~k~g~~~- 329 (623)
+.-+..+ ---|..++-..|+.++|.++|...++.... |. +.-|+|+.+-....=++
T Consensus 202 ~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~ 280 (652)
T KOG2376|consen 202 LRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDG 280 (652)
T ss_pred HHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCch
Confidence 1111111 223455677889999999999999887543 43 44455543322111111
Q ss_pred HHHHHHHHhhcC---------------------------------------------ChHHHHHHHHHHH--HcCChHHH
Q 044791 330 DARRVFDHMADR---------------------------------------------SMDSWHLMINGYA--DNGLGDEG 362 (623)
Q Consensus 330 ~A~~lf~~m~~~---------------------------------------------~~~tyn~Li~~~~--~~g~~eeA 362 (623)
.++..|+..... -...+.+|+..+. +...+.+|
T Consensus 281 ~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka 360 (652)
T KOG2376|consen 281 DLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKA 360 (652)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhh
Confidence 122222211100 0113444444432 22346777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhhcCCCCCccchhhHHHHHHhcCCHHHHH
Q 044791 363 LQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFE--------SMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQ 434 (623)
Q Consensus 363 ~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~--------~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~ 434 (623)
.+++...-+..-.-..+.-..++......|+++.|++++. .+.+- +..|. +..+++..|.+.++.+-|.
T Consensus 361 ~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P~--~V~aiv~l~~~~~~~~~a~ 437 (652)
T KOG2376|consen 361 IELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLPG--TVGAIVALYYKIKDNDSAS 437 (652)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccChh--HHHHHHHHHHhccCCccHH
Confidence 7777777655333234455566667788999999999998 44422 44454 4456888888888877677
Q ss_pred HHHHhhCC-------CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCcc
Q 044791 435 QFIEQKLP-------FEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRL 506 (623)
Q Consensus 435 ~lf~~~m~-------~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~ 506 (623)
.+++++++ ..+. ..++.-+...-.++|..++|...++.+.+..+ +|..+...++.++++.
T Consensus 438 ~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~------------~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 438 AVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP------------NDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC------------chHHHHHHHHHHHHhc
Confidence 77666432 2222 14455555556678999999999998888654 4566888999999888
Q ss_pred cc
Q 044791 507 VE 508 (623)
Q Consensus 507 ~~ 508 (623)
.-
T Consensus 506 d~ 507 (652)
T KOG2376|consen 506 DP 507 (652)
T ss_pred CH
Confidence 74
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00098 Score=60.10 Aligned_cols=92 Identities=10% Similarity=0.057 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG 389 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~ 389 (623)
.....+...+.+.|++++|.+.|+.+... +...|..+...+.+.|++++|..+|++..+.+ ..+..++..+...+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 33444445555555555555555544331 22344455555555555555555555544432 112334444444455
Q ss_pred hcCCHHHHHHHHHHHH
Q 044791 390 SADAIEEAFIHFESMK 405 (623)
Q Consensus 390 ~~g~~e~A~~l~~~m~ 405 (623)
..|+.++|...|+...
T Consensus 97 ~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 97 ALGEPESALKALDLAI 112 (135)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555554444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.67 E-value=6.9e-05 Score=50.38 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRG 310 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p 310 (623)
.+|+++|.+|++.|+++.|.++|++|++.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578899999999999999999999998888876
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.013 Score=59.90 Aligned_cols=225 Identities=13% Similarity=0.070 Sum_probs=165.0
Q ss_pred HHHHHcCCHHHHHHHHHcCC--CC--------------CHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 044791 254 ARLCQEGKVKEAIELMDKGV--KA--------------DASC--FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLN 315 (623)
Q Consensus 254 ~~~~~~g~~~~A~~l~~~~~--~p--------------d~~t--y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y 315 (623)
..+.+.|.++.|..=|+.-+ .| -... ....+..+.-.|+...|+++...+++.. .-|+..|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 45778999999998885311 11 1111 2234556677899999999999999974 4489999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhh---cCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH----H-----
Q 044791 316 NKVIEMYGKCGSMTDARRVFDHMA---DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFL----A----- 383 (623)
Q Consensus 316 ~~Li~~y~k~g~~~~A~~lf~~m~---~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~----~----- 383 (623)
-.-..+|...|++.+|+.=++... ..+..++--+-..+...|+.+.++...++.++. .||....- .
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence 999999999999999998776554 346667777778888999999999999998874 67653221 1
Q ss_pred --H--HHHHHhcCCHHHHHHHHHHHHhhcCCCC---CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHH
Q 044791 384 --V--FSACGSADAIEEAFIHFESMKSEFGISP---GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-AEFWEALRN 455 (623)
Q Consensus 384 --l--i~a~~~~g~~e~A~~l~~~m~~~~g~~p---~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~Li~ 455 (623)
| +....+.+++.++++..+...+. .-.. ....+..+-.+|...|.+.+|+....+++.+.|| +.++.--..
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~-ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKN-EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 1 12234556777777777766643 2111 2234445666777889999999999997888886 778888888
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCCC
Q 044791 456 YARIHGDIDLEDHAEELMVDLDPSKAD 482 (623)
Q Consensus 456 a~~~~g~~~~A~~~~~~~~~m~~~~~~ 482 (623)
+|....++|.|+.-++...+.++++..
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 999899999999999999998877643
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.012 Score=65.96 Aligned_cols=134 Identities=18% Similarity=0.209 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccchhhHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEHYLGLVGV 423 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~ 423 (623)
.|......+.+.+..++|...+.|..... .-....|......+...|.+++|.+.|.... -+.|+ +.+..+|..+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHH
Confidence 45566677888888899988888877642 3355666666677788899999999998776 67774 6678889999
Q ss_pred HHhcCCHHHHHH--HHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCC
Q 044791 424 LGKCGHLFEAQQ--FIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKAD 482 (623)
Q Consensus 424 ~~k~g~~e~A~~--lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~ 482 (623)
+.+.|+-.-|.. ++..++++.| +-..|-.|...+.+.|+.+.|-+.+....+++....+
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999998777776 8888778777 4579999999999999999999999999999887654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.04 Score=60.72 Aligned_cols=292 Identities=14% Similarity=0.167 Sum_probs=156.3
Q ss_pred HHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHcCCHH
Q 044791 256 LCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQS------TIRGDLVLNNKVIEMYGKCGSMT 329 (623)
Q Consensus 256 ~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~------g~~pd~~~y~~Li~~y~k~g~~~ 329 (623)
....|..+-++.+|++=++.++..-+.-|..+++.+++++|.+.+...+.. ..+.+...|.-|-+..++.-+.-
T Consensus 148 v~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~ 227 (835)
T KOG2047|consen 148 VESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKV 227 (835)
T ss_pred HHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchh
Confidence 334455556666666544444444555566666666666666666554421 11234444554444444432221
Q ss_pred ---HHHHHHHHhhcC--ChH--HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------
Q 044791 330 ---DARRVFDHMADR--SMD--SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA----------- 391 (623)
Q Consensus 330 ---~A~~lf~~m~~~--~~~--tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~----------- 391 (623)
...++++.+..+ |-. .|++|.+-|.+.|.+|+|..+|++.... ..++.-|+.+.++|+.-
T Consensus 228 ~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~ 305 (835)
T KOG2047|consen 228 QSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMEL 305 (835)
T ss_pred cccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 122333333332 222 7999999999999999999999998765 23444455555555421
Q ss_pred -----C------CHHHHHHHHHHHHhhcCCC---------C-CccchhhHHHHHHhcCCHHHHHHHHHhhCC-CCCC---
Q 044791 392 -----D------AIEEAFIHFESMKSEFGIS---------P-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-FEPT--- 446 (623)
Q Consensus 392 -----g------~~e~A~~l~~~m~~~~g~~---------p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-~~Pd--- 446 (623)
| +++-.+.-|+.+.....+- | ++..|..-+ -+..|+..+-...|.+++. +.|-
T Consensus 306 a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~ 383 (835)
T KOG2047|consen 306 ADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAV 383 (835)
T ss_pred hhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCC
Confidence 1 2333444455554332211 1 122222211 2224667777777777442 3442
Q ss_pred ---HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHH
Q 044791 447 ---AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKA 523 (623)
Q Consensus 447 ---~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~ 523 (623)
...|..+.+.|-.+|+++.|..+++......-..+. --..+|+.+-+.-.+...| +.|++
T Consensus 384 Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~--------dLa~vw~~waemElrh~~~--------~~Al~- 446 (835)
T KOG2047|consen 384 GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE--------DLAEVWCAWAEMELRHENF--------EAALK- 446 (835)
T ss_pred CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH--------HHHHHHHHHHHHHHhhhhH--------HHHHH-
Confidence 257888999999999999999999988775433321 1123444444444444444 45555
Q ss_pred HHHHHHCCcccCcce---eeeccCHH---HHHHHHHHHHhHHHHHHhcccCCC
Q 044791 524 LNQMKESTYVPDTRY---VLHDIDQE---AKEQALLYHSERLAIAYGLISTPA 570 (623)
Q Consensus 524 ~~~M~~~Gi~Pd~~t---~~~li~~~---~k~~~~~~~~g~l~~A~~ll~~m~ 570 (623)
-|.++-..|.... |...-..- .+..-+....-.++|+++.|++..
T Consensus 447 --lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 447 --LMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred --HHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 4666666676632 33222111 111122334445666666665543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0015 Score=58.97 Aligned_cols=91 Identities=10% Similarity=0.013 Sum_probs=49.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHc
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADN 356 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~ 356 (623)
...+...+...|++++|.+.++.+...+ ..+...+..+..+|.+.|++++|..+|+...+. +...|..+...|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 4444455555566666666665555543 224555555555666666666666666555332 233455555556666
Q ss_pred CChHHHHHHHHHHHH
Q 044791 357 GLGDEGLQLFEQMRK 371 (623)
Q Consensus 357 g~~eeA~~l~~eM~~ 371 (623)
|++++|+..|++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666655555
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0067 Score=70.87 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNG 357 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g 357 (623)
.++-.|..+|.+.|+.++|..+|+++++.. .-|+.+.|.+...|+.. ++++|++++.+.... |...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-----------~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-----------FIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----------HHhhh
Confidence 345556666666677777777777776654 23566666666666666 677776666655432 44444
Q ss_pred ChHHHHHHHHHHHH
Q 044791 358 LGDEGLQLFEQMRK 371 (623)
Q Consensus 358 ~~eeA~~l~~eM~~ 371 (623)
++.++.++|.++.+
T Consensus 184 q~~~~~e~W~k~~~ 197 (906)
T PRK14720 184 QYVGIEEIWSKLVH 197 (906)
T ss_pred cchHHHHHHHHHHh
Confidence 55555555555554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0044 Score=57.01 Aligned_cols=123 Identities=8% Similarity=0.009 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC--h----HHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD---LVLNNKVIEMYGKCGSMTDARRVFDHMADRS--M----DSWHL 348 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~--~----~tyn~ 348 (623)
..|..++..+. .++...+.+.++.+.+..- .+ ....-.+...+...|++++|...|+.+.... . ...-.
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 34666666664 7778888888888877532 22 2223335577778888888888888876532 2 14445
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESM 404 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m 404 (623)
|...+...|++++|+.+++...... .....+....+.|...|+.++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6677888888888888886643322 23445666777888888888888888653
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0094 Score=68.27 Aligned_cols=247 Identities=16% Similarity=0.132 Sum_probs=159.0
Q ss_pred cCCChHHHHHHHHHhcCCCCCCC-c------cCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCCCCH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPN-Q------LNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADA 277 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~-~------~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~pd~ 277 (623)
.++-|++|..+|+........-. . ++...+....| ....+|..+..+-.+.|.+.+|++-|-++- |+
T Consensus 1060 ~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~----n~p~vWsqlakAQL~~~~v~dAieSyikad--Dp 1133 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERC----NEPAVWSQLAKAQLQGGLVKDAIESYIKAD--DP 1133 (1666)
T ss_pred hhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhh----CChHHHHHHHHHHHhcCchHHHHHHHHhcC--Cc
Confidence 67889999999986622111000 0 00111111111 134566677788888999999998886543 55
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH-------------
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD------------- 344 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~------------- 344 (623)
..|..+++++.+.|.+++-.+++...++..-.|.+. +.||-+|++.+++.+-++++ ..+++.
T Consensus 1134 s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhh
Confidence 689999999999999999999998888876666654 47999999999988876653 223333
Q ss_pred -------------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 044791 345 -------------SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGIS 411 (623)
Q Consensus 345 -------------tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~ 411 (623)
-|.-|...++..|++..|...-++. -+..||--+-.+|...+.+..| .|. ..++.
T Consensus 1209 ~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiC-GL~ii 1276 (1666)
T KOG0985|consen 1209 MYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QIC-GLNII 1276 (1666)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----Hhc-CceEE
Confidence 4455555555555555555433332 2456777777777666655433 233 11222
Q ss_pred CCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 412 PGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 412 p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
....-..-||.-|-..|.++|.+.+++..++++. ..-.|+-|.-.|.+- +.++..+-++++..
T Consensus 1277 vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFws 1340 (1666)
T KOG0985|consen 1277 VHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWS 1340 (1666)
T ss_pred EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 3344456788999999999999999999777554 455677777677654 45544555555543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0036 Score=67.09 Aligned_cols=122 Identities=13% Similarity=0.165 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYA 354 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~ 354 (623)
.....|+..+...++++.|+++|+++.+.. |++ ...|+..+...++-.+|++++++..+. +......-...|.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445567778888899999999999998864 554 445788888888889999999888753 4556666677789
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
+.++++.|+.+.+++.+. .|+. .+|..|..+|...|+++.|+..++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999985 6665 599999999999999999999988776
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.02 Score=56.55 Aligned_cols=180 Identities=14% Similarity=0.170 Sum_probs=126.6
Q ss_pred CCHHHHHHHHH-------cC-CCCCHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCHH
Q 044791 260 GKVKEAIELMD-------KG-VKADAS-CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKV-IEMYGKCGSMT 329 (623)
Q Consensus 260 g~~~~A~~l~~-------~~-~~pd~~-ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~L-i~~y~k~g~~~ 329 (623)
.+.++.++++. .| ..++.. .|--++-+....|+.+.|..+++++... + |...-...| .-.+--.|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchh
Confidence 44555555552 24 556654 3666777777888899999999998776 3 332222222 22234468899
Q ss_pred HHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 330 DARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 330 ~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
+|+++|+.+.+. |.++|---+...-..|+--+|++-+.+..+. +.-|...|.-+-..|...|++++|.-.+++|.
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l- 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL- 181 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-
Confidence 999999988865 4456777777777788888998888888876 56688999999999999999999999999988
Q ss_pred hcCCCC-CccchhhHHHHHHhcC---CHHHHHHHHHhhCCCCC
Q 044791 407 EFGISP-GTEHYLGLVGVLGKCG---HLFEAQQFIEQKLPFEP 445 (623)
Q Consensus 407 ~~g~~p-~~~ty~~Li~~~~k~g---~~e~A~~lf~~~m~~~P 445 (623)
-+.| +...+..+.+.+.-.| +++-|.++|.+++++.|
T Consensus 182 --l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 --LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred --HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 4455 3444455555554433 56778888888777666
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0077 Score=64.43 Aligned_cols=139 Identities=12% Similarity=-0.006 Sum_probs=109.8
Q ss_pred HHHcCCHHHHHHHHHHhhc--C-ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 044791 322 YGKCGSMTDARRVFDHMAD--R-SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN-EQTFLAVFSACGSADAIEEA 397 (623)
Q Consensus 322 y~k~g~~~~A~~lf~~m~~--~-~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd-~~ty~~li~a~~~~g~~e~A 397 (623)
+...|.+++|+..++.+.. + |+.-+......+.+.++.++|.+.|++++.. .|+ .....++..+|.+.|+..+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3456788888888888764 3 4556666778899999999999999999985 566 45666778889999999999
Q ss_pred HHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 398 FIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 398 ~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
..++++... ...-|...|..|..+|...|+..+|..-.-+ +|...|+++.|...+....+..
T Consensus 394 i~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE----------------~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 394 IRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAE----------------GYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHH----------------HHHhCCCHHHHHHHHHHHHHhc
Confidence 999998874 4555788999999999999999999877776 4556889988877777776654
Q ss_pred CCC
Q 044791 478 PSK 480 (623)
Q Consensus 478 ~~~ 480 (623)
..+
T Consensus 456 ~~~ 458 (484)
T COG4783 456 KLG 458 (484)
T ss_pred cCC
Confidence 443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0012 Score=53.53 Aligned_cols=88 Identities=24% Similarity=0.206 Sum_probs=34.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcC
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCG 428 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g 428 (623)
+...+...|++++|+.+|+++.+... .+...+..+...+...|++++|.++|+..... ...+..++..+..++...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHHHH
Confidence 33344444444444444444443211 11233333444444444444444444443321 0111123333444444444
Q ss_pred CHHHHHHHHHh
Q 044791 429 HLFEAQQFIEQ 439 (623)
Q Consensus 429 ~~e~A~~lf~~ 439 (623)
+.++|..++++
T Consensus 83 ~~~~a~~~~~~ 93 (100)
T cd00189 83 KYEEALEAYEK 93 (100)
T ss_pred hHHHHHHHHHH
Confidence 44444444444
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00079 Score=58.15 Aligned_cols=81 Identities=17% Similarity=0.264 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhhcCCCCCcc
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGL-QPNEQTFLAVFSACGSAD--------AIEEAFIHFESMKSEFGISPGTE 415 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~-~Pd~~ty~~li~a~~~~g--------~~e~A~~l~~~m~~~~g~~p~~~ 415 (623)
|-...|..|...+++.+...+|+.+++.|+ .|+..+|+.++.+.++.. ++-.++.+|..|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 556677888888999999999999999999 899999999999877642 244567888999876 8999999
Q ss_pred chhhHHHHHHh
Q 044791 416 HYLGLVGVLGK 426 (623)
Q Consensus 416 ty~~Li~~~~k 426 (623)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.015 Score=57.41 Aligned_cols=187 Identities=15% Similarity=0.164 Sum_probs=137.3
Q ss_pred CCCHHHHHHHHHHHHH---cC-CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHH-H--HHHHcCChHH
Q 044791 290 PKWYENAKKVHDYFLQ---ST-IRGDL-VLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMI-N--GYADNGLGDE 361 (623)
Q Consensus 290 ~g~~~~A~~l~~~m~~---~g-~~pd~-~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li-~--~~~~~g~~ee 361 (623)
..+.++..+++.+|+. .| ..++. .+|.-++-+...+|+.+.|..+++.+..+=.-++..+. . -+-..|.+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 4567888888888764 34 55554 56677778888899999999999988754333333221 1 1445789999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhC
Q 044791 362 GLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKL 441 (623)
Q Consensus 362 A~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m 441 (623)
|+++|+..++.. .-|.++|--=+...-..|+--+|++-+....+ .+.-|...|.-|.+.|...|++++|.-++++++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999999876 44677887777777778888899988888875 466688999999999999999999999999965
Q ss_pred CCCCCHH-HHHHHHHHHHHcC---ChhHHHHHHHHHHhcCCC
Q 044791 442 PFEPTAE-FWEALRNYARIHG---DIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 442 ~~~Pd~~-ty~~Li~a~~~~g---~~~~A~~~~~~~~~m~~~ 479 (623)
-+.|... .+..+...+.-.| +++.+.+.++...++.+.
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 5678554 4444555444333 466677777777776553
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0047 Score=61.20 Aligned_cols=150 Identities=13% Similarity=0.058 Sum_probs=89.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH-HHHHHHHHHHH----
Q 044791 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD-SWHLMINGYAD---- 355 (623)
Q Consensus 281 ~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~-tyn~Li~~~~~---- 355 (623)
..-...|++.|++++|++..... - +..+...=+..+.|..++|-|...++.|.+-|.. +.+-|..++.+
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhcc
Confidence 33344667777777777776551 1 2333333345556667777777777777765443 55545555444
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHH-HH
Q 044791 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFE-AQ 434 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~-A~ 434 (623)
.+++.+|+-+|++|-++ ..|+..+.+-+..++...|++++|..++++...+..- +..+...+|..-...|+-.+ ..
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~--dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK--DPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHhCCChHHHH
Confidence 34577777777777654 5677777777777777777788887777777754222 23344444444444454433 33
Q ss_pred HHHHh
Q 044791 435 QFIEQ 439 (623)
Q Consensus 435 ~lf~~ 439 (623)
+.+..
T Consensus 263 r~l~Q 267 (299)
T KOG3081|consen 263 RNLSQ 267 (299)
T ss_pred HHHHH
Confidence 34444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00014 Score=47.64 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQST 307 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g 307 (623)
+|++||++|++.|++++|.++|++|++.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44555555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.043 Score=61.69 Aligned_cols=187 Identities=12% Similarity=0.068 Sum_probs=112.0
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCC--C-CHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVK--A-DASC 279 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~--p-d~~t 279 (623)
+.|+|..+.+.|++...+- +.. ...+..+-..|...|.-..|+.++++ ... | |...
T Consensus 335 ~~g~f~~lae~fE~~~~~~-----~~~--------------~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALPFS-----FGE--------------HERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HHHHHHHHHHHHHHHhHhh-----hhh--------------HHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 8899999999999773311 111 12344555667777777788888765 333 3 2333
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHc--CCC--CCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHhhcCCh
Q 044791 280 FYTLFELCGN-PKWYENAKKVHDYFLQS--TIR--GDLVLNNKVIEMYGKC-----------GSMTDARRVFDHMADRSM 343 (623)
Q Consensus 280 y~~Ll~~~~~-~g~~~~A~~l~~~m~~~--g~~--pd~~~y~~Li~~y~k~-----------g~~~~A~~lf~~m~~~~~ 343 (623)
+-..-+.|.+ .+.+++++++-.+.++. |.. .....|-.+.-+|... ....+++..+++..+.|.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 4444444433 46777777776666652 211 2345555565555432 123456666666654333
Q ss_pred HHHHH---HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 044791 344 DSWHL---MINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGI 410 (623)
Q Consensus 344 ~tyn~---Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~ 410 (623)
.-++. +.--|+..++++.|++...+..+.+-.-+...|..|...+...+++.+|+.+.+....++|.
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 22222 22335666778888888888877765667777777777777778888888777776665543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0021 Score=52.07 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESM 404 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m 404 (623)
+..+...+...|++++|+++|++...... .+..++..+...+...|+.++|...+...
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33344444444444444444444443221 12233344444444444444444444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0041 Score=58.97 Aligned_cols=88 Identities=15% Similarity=0.054 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--C----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMADR--S----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAV 384 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~--~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~l 384 (623)
...|..+...|...|++++|+..|++..+. + ...|..+...+.+.|++++|+..|++..+. .| +...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 445666666666777777777777766531 1 235666666677777777777777666654 23 33445555
Q ss_pred HHHHHhcCCHHHHHHHH
Q 044791 385 FSACGSADAIEEAFIHF 401 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~ 401 (623)
..++...|+...+..-+
T Consensus 113 g~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHcCChHhHhhCH
Confidence 55566666555444333
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0048 Score=63.57 Aligned_cols=193 Identities=13% Similarity=0.154 Sum_probs=108.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----CC-----hHH
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQS----TIRG-DLVLNNKVIEMYGKCGSMTDARRVFDHMAD----RS-----MDS 345 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~----~~-----~~t 345 (623)
|.-....|-..|++++|.+.|.+.... |-.. -...|.....+|.+. ++++|++.|++..+ .+ ...
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~ 116 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 444455556666666666666554332 1100 123444444444443 66666666665542 11 115
Q ss_pred HHHHHHHHHHc-CChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-----c
Q 044791 346 WHLMINGYADN-GLGDEGLQLFEQMRKL----GLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-----T 414 (623)
Q Consensus 346 yn~Li~~~~~~-g~~eeA~~l~~eM~~~----g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-----~ 414 (623)
+..+...|-.. |++++|+++|++..+. |-.- -..++..+...+.+.|++++|.++|+++... -+.-+ +
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK-CLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-CCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-hhcccccchhH
Confidence 66666777777 8999999999987643 2111 1245667778899999999999999998754 22211 1
Q ss_pred c-chhhHHHHHHhcCCHHHHHHHHHhhCCCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 415 E-HYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT------AEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 415 ~-ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd------~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
. .|-..+-++...|+...|.+.|++.+...|. ......||.+| +.||.+....++..+..
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcc
Confidence 1 2233344566679999999999984444331 24455566665 46666655555555544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0021 Score=69.25 Aligned_cols=118 Identities=9% Similarity=0.030 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----CChHHH
Q 044791 273 VKADASCFYTLFELCGNPKWYENAKKVHDYFLQS--TIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD----RSMDSW 346 (623)
Q Consensus 273 ~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~----~~~~ty 346 (623)
...+......+++.+....+++++..++-+.+.. ....-..|..++|+.|.+.|..++|+++++.=.. +|-.+|
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3344445555555555555555555555554443 1111122334555555555555555555543322 233455
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044791 347 HLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS 390 (623)
Q Consensus 347 n~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~ 390 (623)
|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 55555555555555555555555544444444555444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00096 Score=68.69 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=8.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 044791 450 WEALRNYARIHGDIDLEDHAEELMV 474 (623)
Q Consensus 450 y~~Li~a~~~~g~~~~A~~~~~~~~ 474 (623)
|...+..=.+.|+++.+.++.+++.
T Consensus 110 w~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 110 WKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333333333333333333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0022 Score=55.93 Aligned_cols=94 Identities=16% Similarity=0.066 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQ--PNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVG 422 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~--Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~ 422 (623)
+..++..+.+.|++++|...|+++....-. .....+..+..++.+.|++++|..+|+.+.....-.+ ....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 333444444555555555555555433110 0122333444445555555555555555443211111 1223334444
Q ss_pred HHHhcCCHHHHHHHHHh
Q 044791 423 VLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 423 ~~~k~g~~e~A~~lf~~ 439 (623)
++.+.|+.++|..++++
T Consensus 85 ~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQ 101 (119)
T ss_pred HHHHhCChHHHHHHHHH
Confidence 44555555555555554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.004 Score=64.13 Aligned_cols=142 Identities=15% Similarity=0.180 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHH---HH-HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMI---NG-YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSAC 388 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li---~~-~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~ 388 (623)
.+|-.+|+..-+.+.+++|+.+|.+..+.+..+|.+.+ .. |...++.+.|..+|+..++. +.-+...|..-|+.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 57889999999999999999999999875544443333 23 33356677799999999976 555777788889999
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 044791 389 GSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRN 455 (623)
Q Consensus 389 ~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~ 455 (623)
.+.|+.+.|..+|++......... ....|...|+.=.+.|+++.+..+.+++....|+......+++
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999999999999985422222 2348888888888999999999999984444455333333333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0027 Score=61.38 Aligned_cols=118 Identities=16% Similarity=0.224 Sum_probs=88.2
Q ss_pred CCCCHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHH
Q 044791 273 VKADASCFYTLFELCGN-----PKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWH 347 (623)
Q Consensus 273 ~~pd~~ty~~Ll~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn 347 (623)
-..|-.+|..+++.+.+ .|.++-....+..|.+-|+..|..+|+.||+.+=+ |.+- -..+|+.|-
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F-------- 112 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF-------- 112 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh--------
Confidence 45677889988888864 48899999999999999999999999999999876 3332 223333221
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA-IEEAFIHFESMK 405 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~-~e~A~~l~~~m~ 405 (623)
.-| -.+-+-|++++++|+..|+.||..|+..|+..+++.+. +.+..++.-.|-
T Consensus 113 ---~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 113 ---MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred ---ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 111 12457899999999999999999999999999987664 334444444444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0014 Score=63.28 Aligned_cols=97 Identities=15% Similarity=0.308 Sum_probs=75.1
Q ss_pred HHHHHHh--hcCChHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-------------
Q 044791 332 RRVFDHM--ADRSMDSWHLMINGYADN-----GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA------------- 391 (623)
Q Consensus 332 ~~lf~~m--~~~~~~tyn~Li~~~~~~-----g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~------------- 391 (623)
.++|+.. ..++-.+|..+|..|.+. |.+|-....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4556655 456777888888887654 66788888899999999999999999999887642
Q ss_pred ---CCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCC
Q 044791 392 ---DAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGH 429 (623)
Q Consensus 392 ---g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~ 429 (623)
.+.+-|++++++|+.. |+.||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 1236788888888855 888888888888888877654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0053 Score=62.90 Aligned_cols=193 Identities=13% Similarity=0.123 Sum_probs=102.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADASC-------FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDL-VLNNKVIEMY 322 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~t-------y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~~y~~Li~~y 322 (623)
+|+--|.+.+++.+|..+.++--.-++.- +..+..-......+.-|...|...-+.+..-|. ----++..++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 55666778888888888876522222222 222222223333455566666554444444332 1123344555
Q ss_pred HHcCCHHHHHHHHHHhhc----CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCHHHH
Q 044791 323 GKCGSMTDARRVFDHMAD----RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVF-SACGSADAIEEA 397 (623)
Q Consensus 323 ~k~g~~~~A~~lf~~m~~----~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li-~a~~~~g~~e~A 397 (623)
.-...+|+++-.++.++. .|+..|| +..+++..|.+.+|+++|-......++ |..+|-+++ ++|.+.++.+.|
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHH
Confidence 555567777777666653 2333333 456677777777777777655433333 445554443 455667777777
Q ss_pred HHHHHHHHhhcCCCCCccchh-hHHHHHHhcCCHHHHHHHHHhhCC-CCCCHHHH
Q 044791 398 FIHFESMKSEFGISPGTEHYL-GLVGVLGKCGHLFEAQQFIEQKLP-FEPTAEFW 450 (623)
Q Consensus 398 ~~l~~~m~~~~g~~p~~~ty~-~Li~~~~k~g~~e~A~~lf~~~m~-~~Pd~~ty 450 (623)
++++-.+.. .-+..+.- .+..-|.+++.+--|.+.|+. ++ ..|+..-|
T Consensus 448 W~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~-lE~lDP~pEnW 497 (557)
T KOG3785|consen 448 WDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKAFDE-LEILDPTPENW 497 (557)
T ss_pred HHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHccCCCcccc
Confidence 766644431 11222222 223445566766666666666 43 44555444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0056 Score=68.31 Aligned_cols=141 Identities=9% Similarity=-0.033 Sum_probs=81.8
Q ss_pred CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHhhcCChH---HHHHHHHHHHHc--------CChHHHHHHHHHHHH
Q 044791 308 IRGDLVLNNKVIEMYGKCG-----SMTDARRVFDHMADRSMD---SWHLMINGYADN--------GLGDEGLQLFEQMRK 371 (623)
Q Consensus 308 ~~pd~~~y~~Li~~y~k~g-----~~~~A~~lf~~m~~~~~~---tyn~Li~~~~~~--------g~~eeA~~l~~eM~~ 371 (623)
...|...|...+.+..... ..++|+.+|++..+.|.. .|..+..++... +++.++.+..++...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4456677777766654322 256777777777653322 333333332221 112333333333333
Q ss_pred cC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHH
Q 044791 372 LG-LQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFW 450 (623)
Q Consensus 372 ~g-~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty 450 (623)
.. ...+..+|..+...+...|++++|...+++.. .+.|+...|..+...|...|+.++|.+.|++++.+.|...||
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl---~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI---DLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 21 22344566666555556678888888887777 344667777777777777888888888887777766765554
Q ss_pred H
Q 044791 451 E 451 (623)
Q Consensus 451 ~ 451 (623)
.
T Consensus 490 ~ 490 (517)
T PRK10153 490 Y 490 (517)
T ss_pred H
Confidence 3
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.009 Score=60.01 Aligned_cols=159 Identities=14% Similarity=0.059 Sum_probs=108.2
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-----------
Q 044791 275 ADASCFYTLFELCGNPKWYENAKKVHDYFLQS-TIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRS----------- 342 (623)
Q Consensus 275 pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~----------- 342 (623)
-+..+.+.......+.|++++|.+-|....+- |.. ....||..+ +..+.|+.+.|+++..++.+++
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm 219 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGM 219 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccc
Confidence 34555666666677889999999998888775 555 456777555 4456688899998888876541
Q ss_pred ------h---------------HHHHHHHHHHHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044791 343 ------M---------------DSWHLMINGYADNGLGDEGLQLFEQMR-KLGLQPNEQTFLAVFSACGSADAIEEAFIH 400 (623)
Q Consensus 343 ------~---------------~tyn~Li~~~~~~g~~eeA~~l~~eM~-~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l 400 (623)
+ ..+|.-...+.+.|+++.|.+.+-.|- ...-+.|.+|...+.-.=.. ++..+..+-
T Consensus 220 ~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~K 298 (459)
T KOG4340|consen 220 TTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFEK 298 (459)
T ss_pred eeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHHH
Confidence 1 145555555677888888888888875 22335577777766443222 334444444
Q ss_pred HHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 401 FESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 401 ~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
+.-+. ++.| -..||..|+-.|||..-++.|-+++-+
T Consensus 299 LqFLL---~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 299 LQFLL---QQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHH---hcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 44444 4445 457899999999999999999999888
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.015 Score=64.30 Aligned_cols=190 Identities=15% Similarity=0.094 Sum_probs=120.1
Q ss_pred HHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCC--------CHHHHHHHHHHHHHcCC
Q 044791 257 CQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQS-TIRG--------DLVLNNKVIEMYGKCGS 327 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-g~~p--------d~~~y~~Li~~y~k~g~ 327 (623)
...-.+++|.++.++. |....|..|.......-.++.|+..|-+...- |++. +...-.+=|.+| -|+
T Consensus 674 ve~vgledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~ 749 (1189)
T KOG2041|consen 674 VEAVGLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGE 749 (1189)
T ss_pred HHHhchHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcc
Confidence 3344577777777764 55567777777666666777777766554331 3221 111112223333 489
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044791 328 MTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN----EQTFLAVFSACGSADAIEEAFIHFES 403 (623)
Q Consensus 328 ~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd----~~ty~~li~a~~~~g~~e~A~~l~~~ 403 (623)
+++|+++|-+|..+|. .|..+.+.|++-.+..+++. .|-.-| ..+|+.+...++....+++|.+.|..
T Consensus 750 feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988875 45667777888777766643 121111 35788888888888888888888865
Q ss_pred HHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 044791 404 MKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEE 471 (623)
Q Consensus 404 m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~ 471 (623)
-.. -...+++|.+...+++-+.+.+. +. -|....-.|..++...|.-+.|.+++-
T Consensus 822 ~~~----------~e~~~ecly~le~f~~LE~la~~-Lp--e~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 822 CGD----------TENQIECLYRLELFGELEVLART-LP--EDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred ccc----------hHhHHHHHHHHHhhhhHHHHHHh-cC--cccchHHHHHHHHHhhchHHHHHHHHH
Confidence 431 12467777777777777777666 43 244455566677777777775555543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.014 Score=62.93 Aligned_cols=196 Identities=14% Similarity=0.110 Sum_probs=136.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH----------HHHHH
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD----------SWHLM 349 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~----------tyn~L 349 (623)
+..|+++..+..+++.|++-+...+... -++.-+++...+|...|...+++.+-+...+.+-. ++..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4456677777777888888887777754 45566667777777777777776666655443322 23334
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHHH
Q 044791 350 INGYADNGLGDEGLQLFEQMRKLGLQPNEQTF-------------------------LAVFSACGSADAIEEAFIHFESM 404 (623)
Q Consensus 350 i~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty-------------------------~~li~a~~~~g~~e~A~~l~~~m 404 (623)
..+|.+.++++.|+..|.+.+.....||..+= -.-...+.+.|++..|...|.++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 44566677778888888777665555443321 11245567889999999999999
Q ss_pred HhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 405 KSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 405 ~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
++. . .-|...|....-+|.+.|.+.+|+.-.+..++..|+. ..|.-=..++....+++.|.+++....+.++.
T Consensus 385 Ikr-~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 385 IKR-D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred Hhc-C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 954 2 3378899999999999999999999888877766654 34444444555667789899999988887644
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0034 Score=67.70 Aligned_cols=113 Identities=11% Similarity=0.069 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-C-----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMADR-S-----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV 384 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-~-----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~l 384 (623)
+......+++.+....++|+|..++-+.... + ..|..++|..|.+.|..++|+.++..=..-|+-||..|||.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444444555555555555555555444321 0 113445555555555555555555555555555555555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHH
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVL 424 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~ 424 (623)
|+.+.+.|++..|.++...|... +...+..|+.--+.+|
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHH
Confidence 55555555555555555555433 3333334433333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0048 Score=53.79 Aligned_cols=102 Identities=12% Similarity=0.066 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC----HHHHHHH
Q 044791 379 QTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT----AEFWEAL 453 (623)
Q Consensus 379 ~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd----~~ty~~L 453 (623)
.++..+...+.+.|++++|.+.|+.+.....-.+ ....+..+..++.+.|++++|+.+|++++...|+ ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3566777888899999999999999986522111 1345667889999999999999999995554454 4567788
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 454 RNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 454 i~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
..++...|+.+.|...++.+.+..+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 889999999999999999998876654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0049 Score=58.16 Aligned_cols=61 Identities=11% Similarity=-0.037 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRG--DLVLNNKVIEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~~y~~Li~~y~k~g~~~~A~~lf~~m~ 339 (623)
.|..+...+...|++++|+..|++.+.....+ ...+|..+..+|...|+.++|+..|+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555666666666666665532111 12355566666666666666666666554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0059 Score=52.86 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=70.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTI-RGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNG 357 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g 357 (623)
|-...|..|...+++.....+|+.+++.|+ .|++.+|+.++.+.++..-=.+ .-.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~-----------------------~ie~ 83 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSE-----------------------DIEN 83 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccch-----------------------hHHH
Confidence 344567777777999999999999999999 8999999999998876432111 1112
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044791 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS 390 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~ 390 (623)
+.-+++.+|+.|+..+++|+..||+.++..+.+
T Consensus 84 kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 84 KLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 346778889999999999999999999988754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0018 Score=53.45 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhh--cCChHHHHHHHHHHHHcCChHHHHHHH
Q 044791 290 PKWYENAKKVHDYFLQSTIR-GDLVLNNKVIEMYGKCGSMTDARRVFDHMA--DRSMDSWHLMINGYADNGLGDEGLQLF 366 (623)
Q Consensus 290 ~g~~~~A~~l~~~m~~~g~~-pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~--~~~~~tyn~Li~~~~~~g~~eeA~~l~ 366 (623)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|+.+++... ..+....-.+..+|.+.|++++|+++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 35666666666666664321 133334446666666666666666665521 122223334455666666666666666
Q ss_pred HH
Q 044791 367 EQ 368 (623)
Q Consensus 367 ~e 368 (623)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.014 Score=65.09 Aligned_cols=139 Identities=16% Similarity=0.054 Sum_probs=100.0
Q ss_pred cCChHHHHHHHHHHHHc--CC---hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 044791 340 DRSMDSWHLMINGYADN--GL---GDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGSA--------DAIEEAFIHFESMK 405 (623)
Q Consensus 340 ~~~~~tyn~Li~~~~~~--g~---~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~~--------g~~e~A~~l~~~m~ 405 (623)
..+...|...+.|.... ++ .++|..+|++.++. .|+- ..|..+..++... ++++.+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 35777899999885443 33 77999999999985 6653 4444433333221 12334444444433
Q ss_pred hhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 406 SEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 406 ~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
.......+...|.++.-.+...|++++|...|++++...|+...|..+...+...|+.++|.+.++....++|..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 211122345678777777777899999999999988888999999999999999999999999999999988764
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.013 Score=55.60 Aligned_cols=90 Identities=11% Similarity=0.014 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD--LVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMING 352 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~ 352 (623)
..|..+...+...|++++|...|++.++....+. ...+..+..+|.+.|++++|+..|++..+. +...+..+...
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 4567777777788888888888888776533222 357777888888888888888888877642 34466667777
Q ss_pred HHHcCChHHHHHHHH
Q 044791 353 YADNGLGDEGLQLFE 367 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~ 367 (623)
|...|+...+..-++
T Consensus 116 ~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 116 YHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHcCChHhHhhCHH
Confidence 777776544444333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0035 Score=66.86 Aligned_cols=92 Identities=15% Similarity=0.071 Sum_probs=47.5
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCH
Q 044791 352 GYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHL 430 (623)
Q Consensus 352 ~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~ 430 (623)
.+...|++++|+.+|+++++..-. +...|..+..+|...|++++|+..+++++. +.| +...|..+..+|...|++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhCCH
Confidence 344555555555555555543211 334455555555555555555555555552 233 334455555555555666
Q ss_pred HHHHHHHHhhCCCCCCH
Q 044791 431 FEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 431 e~A~~lf~~~m~~~Pd~ 447 (623)
++|+..|++++.+.|+.
T Consensus 87 ~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 87 QTAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 66666555544444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0018 Score=67.38 Aligned_cols=247 Identities=15% Similarity=0.102 Sum_probs=154.5
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCC-------HHHHHHHHHHHhCCCCHHHHHHHHHH--HHH--cCC-CCCHHHHHHHHH
Q 044791 253 LARLCQEGKVKEAIELMDKGVKAD-------ASCFYTLFELCGNPKWYENAKKVHDY--FLQ--STI-RGDLVLNNKVIE 320 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~~~pd-------~~ty~~Ll~~~~~~g~~~~A~~l~~~--m~~--~g~-~pd~~~y~~Li~ 320 (623)
...+|+.|+....+.+|+..+... ...|.-|.++|.-.+++++|++++.. .+. .|- .-...+...|.+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 456899999999999998644332 35577788888888999999988643 121 111 113456667777
Q ss_pred HHHHcCCHHHHHHHHHHhh----cC-Ch----HHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHH
Q 044791 321 MYGKCGSMTDARRVFDHMA----DR-SM----DSWHLMINGYADNGL--------------------GDEGLQLFEQMRK 371 (623)
Q Consensus 321 ~y~k~g~~~~A~~lf~~m~----~~-~~----~tyn~Li~~~~~~g~--------------------~eeA~~l~~eM~~ 371 (623)
.+--.|.+++|+-...+-. +. |- ..|..|...|...|+ ++.|.++|.+=++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 7878888888876543321 11 11 255667777766654 2334455544221
Q ss_pred ----cCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhC-
Q 044791 372 ----LGLQ-PNEQTFLAVFSACGSADAIEEAFIHFESMK---SEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKL- 441 (623)
Q Consensus 372 ----~g~~-Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~---~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m- 441 (623)
.|-. .-..+|..|...|.-.|+++.|+...+.-. .++|-.. ....+..|.++++-.|.++.|.+.|+..+
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1111 112467777777777889999987765322 2334322 34578888999999999999999998722
Q ss_pred ---CCC-C--CHHHHHHHHHHHHHcCChhHHHHHHHH----HHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccc
Q 044791 442 ---PFE-P--TAEFWEALRNYARIHGDIDLEDHAEEL----MVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEF 509 (623)
Q Consensus 442 ---~~~-P--d~~ty~~Li~a~~~~g~~~~A~~~~~~----~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~ 509 (623)
++. . ...+..+|.++|....+++.|+....+ ..+++... -....|.+|-.++...|..
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dri----------Ge~RacwSLgna~~alg~h 331 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRI----------GELRACWSLGNAFNALGEH 331 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHhhhhH
Confidence 211 1 235666788888777777777665544 23333222 2256777787777777765
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.36 Score=50.54 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=83.5
Q ss_pred hhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCC
Q 044791 406 SEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKK 485 (623)
Q Consensus 406 ~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~ 485 (623)
++++......+.+..|.-+...|....|.++-.+ ..+ ||...|...|.+|+..|+++ ++.+...+ . + +
T Consensus 169 ~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~-Fkv-~dkrfw~lki~aLa~~~~w~---eL~~fa~s-k-K--s--- 236 (319)
T PF04840_consen 169 EKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKE-FKV-PDKRFWWLKIKALAENKDWD---ELEKFAKS-K-K--S--- 236 (319)
T ss_pred HHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHH-cCC-cHHHHHHHHHHHHHhcCCHH---HHHHHHhC-C-C--C---
Confidence 3444433344566667788889999999999998 874 89999999999999999998 44444433 1 1 1
Q ss_pred CCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhc
Q 044791 486 IPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGL 565 (623)
Q Consensus 486 ~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~l 565 (623)
.+-|.-++++|.+.|.. ++|..++.++ ++ .....++.+.|.+.+|.+.
T Consensus 237 -------PIGyepFv~~~~~~~~~--------~eA~~yI~k~------~~-----------~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 237 -------PIGYEPFVEACLKYGNK--------KEASKYIPKI------PD-----------EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred -------CCChHHHHHHHHHCCCH--------HHHHHHHHhC------Ch-----------HHHHHHHHHCCCHHHHHHH
Confidence 25677888888888876 5888887542 11 1222366778888887765
Q ss_pred ccCCC
Q 044791 566 ISTPA 570 (623)
Q Consensus 566 l~~m~ 570 (623)
-.+..
T Consensus 285 A~~~k 289 (319)
T PF04840_consen 285 AFKEK 289 (319)
T ss_pred HHHcC
Confidence 44433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.011 Score=67.83 Aligned_cols=173 Identities=13% Similarity=0.077 Sum_probs=112.2
Q ss_pred CHHHHHHHHHcCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044791 261 KVKEAIELMDKGVKADA---SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDH 337 (623)
Q Consensus 261 ~~~~A~~l~~~~~~pd~---~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~ 337 (623)
+...|+..|-+.++.|+ ..|..|...|+..-+...|.+.|+...+.. .-|......+.+.|++..++++|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 36677777755455443 468889999988888888999998887753 23678888899999999999999988443
Q ss_pred hhcCChH---HHH--HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 044791 338 MADRSMD---SWH--LMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP 412 (623)
Q Consensus 338 m~~~~~~---tyn--~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p 412 (623)
.-+.+.. .+| -+.-.|.+.++...|+.-|+........ |...|..++.+|.+.|++..|.++|.+.. -+.|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs---~LrP 627 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKAS---LLRP 627 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhH---hcCc
Confidence 3333222 222 2333466666777777777766654222 55667777777777777777777776654 3444
Q ss_pred Cccchh--hHHHHHHhcCCHHHHHHHHHh
Q 044791 413 GTEHYL--GLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 413 ~~~ty~--~Li~~~~k~g~~e~A~~lf~~ 439 (623)
+. +|. ....+.|..|++.+|...+..
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ 655 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGL 655 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 32 122 122334556777777666665
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0076 Score=64.31 Aligned_cols=100 Identities=10% Similarity=-0.014 Sum_probs=73.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChH
Q 044791 284 FELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGD 360 (623)
Q Consensus 284 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~e 360 (623)
...+...|++++|+++|+++++... -+...|..+..+|.+.|++++|+..++++.+. +...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 4456677888888888888887542 35777888888888888888888888877653 3447888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044791 361 EGLQLFEQMRKLGLQPNEQTFLAVFS 386 (623)
Q Consensus 361 eA~~l~~eM~~~g~~Pd~~ty~~li~ 386 (623)
+|+..|++.++. .|+......++.
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~l~ 111 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 888888888874 455554444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.01 Score=65.01 Aligned_cols=253 Identities=15% Similarity=0.127 Sum_probs=130.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCC-----------CCHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCCCCHHHHHH
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVK-----------ADASCFYTLFELCGNPKWYE--NAKKVHDYFLQSTIRGDLVLNNK 317 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~-----------pd~~ty~~Ll~~~~~~g~~~--~A~~l~~~m~~~g~~pd~~~y~~ 317 (623)
+-+-.|..+|.+++|..+---|+. .+.-.|++.=++|.+..++. +.+.-+++|++.|-.|+...
T Consensus 561 ~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL--- 637 (1081)
T KOG1538|consen 561 APMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL--- 637 (1081)
T ss_pred ccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---
Confidence 445668889999999876432322 33445666667777776654 33344567778887787654
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEA 397 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A 397 (623)
+...++-.|++.||-++|.+ .|.-..|+++|..|.-- -+..-+...|.-++-
T Consensus 638 lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eK 689 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF----------DYAQEFLGSGDPKEK 689 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH----------HHHHHHhhcCChHHH
Confidence 45556677889998888754 44455555555554421 111222333333333
Q ss_pred HHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHH-------------HhhCCCCCCHHHHHHHHHHHHHcCChh
Q 044791 398 FIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFI-------------EQKLPFEPTAEFWEALRNYARIHGDID 464 (623)
Q Consensus 398 ~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf-------------~~~m~~~Pd~~ty~~Li~a~~~~g~~~ 464 (623)
..+.+.-. ...-++.---+-.+++..+|+.++|.++. ++ +. .-+..+...+..-+.+...+.
T Consensus 690 KmL~RKRA---~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rk-ld-~~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 690 KMLIRKRA---DWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARK-LD-KAEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred HHHHHHHH---HHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhh-cc-hhhhhHHHHHHHHHhhccccc
Confidence 33222111 11111111122344455555555555443 33 22 122334444444444555566
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcce----ee
Q 044791 465 LEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRY----VL 540 (623)
Q Consensus 465 ~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t----~~ 540 (623)
.|.+++..|-+| .+++......++| +||..+-++.- .++||... |.
T Consensus 765 LAaeIF~k~gD~--------------------ksiVqlHve~~~W--------~eAFalAe~hP--e~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 765 LAAEIFLKMGDL--------------------KSLVQLHVETQRW--------DEAFALAEKHP--EFKDDVYMPYAQWL 814 (1081)
T ss_pred hHHHHHHHhccH--------------------HHHhhheeecccc--------hHhHhhhhhCc--cccccccchHHHHh
Confidence 666666655443 3456667777777 58877764432 34455432 22
Q ss_pred eccCHHHHHHHHHHHHhHHHHHHhcccCC
Q 044791 541 HDIDQEAKEQALLYHSERLAIAYGLISTP 569 (623)
Q Consensus 541 ~li~~~~k~~~~~~~~g~l~~A~~ll~~m 569 (623)
.--+....+...+.++|+-.||..+++..
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 22222333444555556666665555443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.016 Score=53.67 Aligned_cols=90 Identities=12% Similarity=0.115 Sum_probs=60.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 044791 317 KVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA 393 (623)
Q Consensus 317 ~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~ 393 (623)
.+...+...|++++|.++|+-+..- +..-|-.|..+|-..|++++|+..|.......+ -|...+-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 4455566677777777777766543 333566677777777777777777777776543 255666677777777777
Q ss_pred HHHHHHHHHHHHhh
Q 044791 394 IEEAFIHFESMKSE 407 (623)
Q Consensus 394 ~e~A~~l~~~m~~~ 407 (623)
.+.|++.|+..+..
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0045 Score=62.42 Aligned_cols=100 Identities=21% Similarity=0.211 Sum_probs=80.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccchhhHHHHHHhcC
Q 044791 351 NGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEHYLGLVGVLGKCG 428 (623)
Q Consensus 351 ~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~~k~g 428 (623)
+-+.+.++|.+|+..|.+.++. .| |.+-|..-..+|++.|.++.|++-.+..+ .+.|. ..+|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 4467788999999999998885 54 55666666778999999999988777666 56664 678999999999999
Q ss_pred CHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 044791 429 HLFEAQQFIEQKLPFEPTAEFWEALRN 455 (623)
Q Consensus 429 ~~e~A~~lf~~~m~~~Pd~~ty~~Li~ 455 (623)
++++|++.|++++++.|+-.+|..=+.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 999999999998899998877765444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.058 Score=58.45 Aligned_cols=182 Identities=15% Similarity=0.178 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHhhcC---Ch-HHHHHHHHHHHHcCChHHHHHHH
Q 044791 294 ENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC---GSMTDARRVFDHMADR---SM-DSWHLMINGYADNGLGDEGLQLF 366 (623)
Q Consensus 294 ~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~---g~~~~A~~lf~~m~~~---~~-~tyn~Li~~~~~~g~~eeA~~l~ 366 (623)
+++..++++.+..-..-+..+|..+.+-=-.. ...+...++++++... +. .+|-.+|+.-.+..-++.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 44555555554432233444444433221111 1245555566655432 22 27888999989988899999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC--C
Q 044791 367 EQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP--F 443 (623)
Q Consensus 367 ~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~--~ 443 (623)
.+..+.+..+ +++.++++|..+|. ++.+-|.++|+-=.+++|-. ..--...++-+...++-..|..+|++++. +
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 78888899988775 78899999998766654433 33345678888999999999999999544 2
Q ss_pred CCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 044791 444 EPT--AEFWEALRNYARIHGDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 444 ~Pd--~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~ 478 (623)
.+| ...|..+|.-=...|++..+.++.+++...-+
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 333 47999999999999999988888888776555
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.01 Score=55.93 Aligned_cols=75 Identities=13% Similarity=-0.025 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC--CCCC----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKG--VKAD----ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEM 321 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~--~~pd----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~ 321 (623)
.+..+...+...|++++|+..|++. +.++ ..++..+..++...|++++|++.+++.++.. +....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 3446666777899999999999864 3333 2478889999999999999999999998752 2235666677767
Q ss_pred HH
Q 044791 322 YG 323 (623)
Q Consensus 322 y~ 323 (623)
|.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 76
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.31 Score=45.67 Aligned_cols=218 Identities=20% Similarity=0.141 Sum_probs=153.1
Q ss_pred cCCHHHHHHHHHc--CCCC---CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044791 259 EGKVKEAIELMDK--GVKA---DASCFYTLFELCGNPKWYENAKKVHDYFLQS-TIRGDLVLNNKVIEMYGKCGSMTDAR 332 (623)
Q Consensus 259 ~g~~~~A~~l~~~--~~~p---d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~~y~~Li~~y~k~g~~~~A~ 332 (623)
.+....+...+.. ...+ ....+..+...+...+.+..+...+...... ........+..+...+...+...+|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 3445555555543 2222 3567888888888999999999888887752 23445677778888888889999999
Q ss_pred HHHHHhhcCCh---HHHHHHHH-HHHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 333 RVFDHMADRSM---DSWHLMIN-GYADNGLGDEGLQLFEQMRKLGL--QPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 333 ~lf~~m~~~~~---~tyn~Li~-~~~~~g~~eeA~~l~~eM~~~g~--~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
+++......+. ........ .+...|++++|...|.+...... .-....+......+...++.+.|...+..+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 99998875322 23444444 78899999999999999865321 12334455555557788999999999998884
Q ss_pred hcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 044791 407 EFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 407 ~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~ 478 (623)
. ... ....+..+...+...+++++|...+..++...|+ ...+..+...+...|..+.+...+.......+
T Consensus 196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3 222 3566778888888899999999999996666665 44555555555567778888777777776544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.013 Score=67.19 Aligned_cols=176 Identities=14% Similarity=0.100 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCChHHHHHHHHH
Q 044791 293 YENAKKVHDYFLQSTIRGD-LVLNNKVIEMYGKCGSMTDARRVFDHMADRS---MDSWHLMINGYADNGLGDEGLQLFEQ 368 (623)
Q Consensus 293 ~~~A~~l~~~m~~~g~~pd-~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~---~~tyn~Li~~~~~~g~~eeA~~l~~e 368 (623)
...|+..|-+.++ +.++ ...|..|...|+...+...|.+.|++..+.| +..+-.+.+.|++..++++|..+.-.
T Consensus 474 ~~~al~ali~alr--ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALR--LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHh--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 4444444433333 2222 4678889999998889999999999887654 45888899999999999999998333
Q ss_pred HHHcCCCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCC
Q 044791 369 MRKLGLQP-NEQTFLA--VFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE 444 (623)
Q Consensus 369 M~~~g~~P-d~~ty~~--li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~ 444 (623)
.-+. .| -...++. +.-.|.+.+++..|..-|+... .+.| |...|..|..+|..+|++..|.++|.++..++
T Consensus 552 ~~qk--a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL---R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 552 AAQK--APAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL---RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred Hhhh--chHHHHHhhhhhccccccCccchhhHHHHHHHHh---cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 2222 11 1122222 3345677889999998888776 5667 78899999999999999999999999966677
Q ss_pred CCHHHHHHHHH-HHHHcCChhHHHHHHHHHHh
Q 044791 445 PTAEFWEALRN-YARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 445 Pd~~ty~~Li~-a~~~~g~~~~A~~~~~~~~~ 475 (623)
|+...-...+. .-+..|..++|..++.++..
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 76532222222 34567777777777666544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.011 Score=54.62 Aligned_cols=105 Identities=9% Similarity=0.081 Sum_probs=81.6
Q ss_pred HHHHHhh-cCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 044791 333 RVFDHMA-DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGI 410 (623)
Q Consensus 333 ~lf~~m~-~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~ 410 (623)
..+..|. ..+....-.+...+...|++++|..+|+-.... .| +..-|..|..+|-..|++++|+..|.... -+
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L 98 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QI 98 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hc
Confidence 3344444 445556666777789999999999999998875 44 44556677777888899999999999887 34
Q ss_pred CC-CccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 411 SP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 411 ~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
.| |...+-.+..+|.+.|+.++|.+.|+.++.
T Consensus 99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44 677888889999999999999999998443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.84 E-value=1.1 Score=51.63 Aligned_cols=218 Identities=12% Similarity=0.074 Sum_probs=139.5
Q ss_pred HHHcCCHHHHHHHHHc--CCCCCHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044791 256 LCQEGKVKEAIELMDK--GVKADASCFYTLFELC--GNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDA 331 (623)
Q Consensus 256 ~~~~g~~~~A~~l~~~--~~~pd~~ty~~Ll~~~--~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A 331 (623)
....+++..|+....+ .-.|+. .|..+++++ .+.|+.++|..+++.....+.. |..|...|-.+|.+.|..|+|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 4456778888877654 224553 355555554 6789999999999888776655 899999999999999999999
Q ss_pred HHHHHHhhcC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------CHHHHHH
Q 044791 332 RRVFDHMADR--SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD----------AIEEAFI 399 (623)
Q Consensus 332 ~~lf~~m~~~--~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g----------~~e~A~~ 399 (623)
..+|++.... +......+..+|+|.+.+.+--+.=-+|-+ .+.-..+.|-++++.....- -+--|.+
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 9999999764 444555666778888877653333222222 23335566666666654321 1345677
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC-C--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 400 HFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-F--EPTAEFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 400 l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-~--~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
.++.+.++.|-.-+..-.-.-...+-..|++++|.+++..... . .-+...-+.-+..+...+++.+..++...+.+-
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 7777776644111111111123345667899999999965232 1 123344455666777888888655555555553
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0026 Score=52.55 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=20.4
Q ss_pred CChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044791 357 GLGDEGLQLFEQMRKLGLQ-PNEQTFLAVFSACGSADAIEEAFIHFES 403 (623)
Q Consensus 357 g~~eeA~~l~~eM~~~g~~-Pd~~ty~~li~a~~~~g~~e~A~~l~~~ 403 (623)
|++++|+.+|+++.+.... ++...+..+..+|.+.|++++|+.+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555443221 1222233344455555555555555544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.012 Score=59.34 Aligned_cols=97 Identities=14% Similarity=0.174 Sum_probs=67.7
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH---HHHHHHHHHHHcCChHHH
Q 044791 286 LCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD---SWHLMINGYADNGLGDEG 362 (623)
Q Consensus 286 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~---tyn~Li~~~~~~g~~eeA 362 (623)
-+.+.+++.+|+..|.+.++.. +-|.+-|..-..+|++.|.++.|++-.+....-|.. +|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4456677777777777777742 235677777777777777777777777776665554 677777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH
Q 044791 363 LQLFEQMRKLGLQPNEQTFLAVF 385 (623)
Q Consensus 363 ~~l~~eM~~~g~~Pd~~ty~~li 385 (623)
++.|++.++ +.|+-.+|-.=|
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHH
Confidence 777777666 467666654433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.028 Score=49.91 Aligned_cols=108 Identities=17% Similarity=0.169 Sum_probs=70.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHH
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKLGLQPN--EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLG 425 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd--~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~ 425 (623)
+..++-..|+.++|+.+|++..+.|+... ...+..+.+.+...|++++|..+|++....+.-.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44567778888888888888888887654 34566677788888888888888888875421111 1122222334667
Q ss_pred hcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 044791 426 KCGHLFEAQQFIEQKLPFEPTAEFWEALRNYAR 458 (623)
Q Consensus 426 k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~ 458 (623)
..|+.++|++.+-..+. ++...|.--|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la--~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA--ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 78888888888766332 33345555555554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.05 Score=58.93 Aligned_cols=175 Identities=11% Similarity=0.190 Sum_probs=110.6
Q ss_pred HHHHHHHHcCCC----CCHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044791 263 KEAIELMDKGVK----ADASCFYTLFELC---GNPKWYENAKKVHDYFLQST-IRGDLVLNNKVIEMYGKCGSMTDARRV 334 (623)
Q Consensus 263 ~~A~~l~~~~~~----pd~~ty~~Ll~~~---~~~g~~~~A~~l~~~m~~~g-~~pd~~~y~~Li~~y~k~g~~~~A~~l 334 (623)
++|.+++++++. -+..+|..+.+-= ......+...+.+++++..- ..| ..+|-.+|+...|..-+..|+.+
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHH
Confidence 444455554332 2444555554422 22223566667777666542 233 35667777777777788888888
Q ss_pred HHHhhcC-----ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 044791 335 FDHMADR-----SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFG 409 (623)
Q Consensus 335 f~~m~~~-----~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g 409 (623)
|.+..+. .+..++++|.-||.. +.+-|.++|+-=+++ ..-+..--...++.+...++-..|..+|++.+.. +
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~csk-D~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSK-DKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-V 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcC-ChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-c
Confidence 8877652 445677777766654 567788888765543 1212333345677777778888888888888866 6
Q ss_pred CCCC--ccchhhHHHHHHhcCCHHHHHHHHHhhC
Q 044791 410 ISPG--TEHYLGLVGVLGKCGHLFEAQQFIEQKL 441 (623)
Q Consensus 410 ~~p~--~~ty~~Li~~~~k~g~~e~A~~lf~~~m 441 (623)
+.++ ...|..+|+-=...|++..+.++-++.+
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 6654 4678888887788888888888777733
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.12 Score=54.94 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=107.7
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccc-hh
Q 044791 341 RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLG-LQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEH-YL 418 (623)
Q Consensus 341 ~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g-~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~t-y~ 418 (623)
.-...|-++|++..+..-++.|..+|-+..+.| +.++++.++++|..+| .|+..-|..+|+.=... -+|... -+
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ 470 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKE 470 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHH
Confidence 334578899999888888999999999999999 7789999999998876 47888999999765533 344333 34
Q ss_pred hHHHHHHhcCCHHHHHHHHHhhCC-CCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 419 GLVGVLGKCGHLFEAQQFIEQKLP-FEPT--AEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 419 ~Li~~~~k~g~~e~A~~lf~~~m~-~~Pd--~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
..+.-+...++-+.|..+|+.+++ +..+ ...|..+|.-=...|++..+..+.++|.+..+.
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 567778889999999999997443 3333 468999999989999999999999999887654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.24 Score=51.87 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVL 424 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~ 424 (623)
+.+..|.-|...|+...|.++-.+.+ .||-.-|...|.+++..+++++-..+... . -...-|..++++|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----k--KsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-----K--KSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----C--CCCCChHHHHHHH
Confidence 44445555666666666666544432 35666666666677777776665554321 1 1235566666666
Q ss_pred HhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 044791 425 GKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLE 466 (623)
Q Consensus 425 ~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A 466 (623)
.+.|...+|..+..+ +. +..-+..|.+.|++.+|
T Consensus 248 ~~~~~~~eA~~yI~k-~~-------~~~rv~~y~~~~~~~~A 281 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK-IP-------DEERVEMYLKCGDYKEA 281 (319)
T ss_pred HHCCCHHHHHHHHHh-CC-------hHHHHHHHHHCCCHHHH
Confidence 666666666666666 32 12334445555555544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.048 Score=48.46 Aligned_cols=88 Identities=10% Similarity=0.014 Sum_probs=49.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhc--CC----hHHHHHHHHHHHH
Q 044791 284 FELCGNPKWYENAKKVHDYFLQSTIRGD--LVLNNKVIEMYGKCGSMTDARRVFDHMAD--RS----MDSWHLMINGYAD 355 (623)
Q Consensus 284 l~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--~~----~~tyn~Li~~~~~ 355 (623)
..++-..|+.++|+.+|++.+..|+..+ ...+-.+...|...|++++|+.+|++... ++ ......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3455556677777777777776665533 23444455666666777777777765543 22 1122223335566
Q ss_pred cCChHHHHHHHHHHHH
Q 044791 356 NGLGDEGLQLFEQMRK 371 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~ 371 (623)
.|+.++|+..+-....
T Consensus 88 ~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA 103 (120)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6777777666655443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.13 Score=54.49 Aligned_cols=164 Identities=13% Similarity=0.112 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChH----HHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMADR---SMD----SWHLMINGYAD---NGLGDEGLQLFEQMRKLGLQPNEQTFLA 383 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~----tyn~Li~~~~~---~g~~eeA~~l~~eM~~~g~~Pd~~ty~~ 383 (623)
+.-.|+-.|....+++..+++.+.|... ++. .--...-++.+ .|+.++|+.++..++...-.++..||..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3345666799999999999999999764 222 22234455667 8999999999999877777788889988
Q ss_pred HHHHHHhc---------CCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHH----HHHHHH---Hh------hC
Q 044791 384 VFSACGSA---------DAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLF----EAQQFI---EQ------KL 441 (623)
Q Consensus 384 li~a~~~~---------g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e----~A~~lf---~~------~m 441 (623)
+...|-.. ..+++|+..|.+-- .+.++..+--.++..+.-.|.-. +..++- .. ..
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 87776432 23667776665433 45554433223333344444321 222222 11 11
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 442 PFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 442 ~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
+-..|...+.+++.++.-.|+.+.|..+.+.+..+.+..
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 133567888899999999999999999999999886543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.12 Score=52.11 Aligned_cols=178 Identities=13% Similarity=0.086 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHhhcCC----hHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLN---NKVIEMYGKCGSMTDARRVFDHMADRS----MDSWHL 348 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y---~~Li~~y~k~g~~~~A~~lf~~m~~~~----~~tyn~ 348 (623)
+...+-.....+.+.|++++|++.|++++..-... .... -.|+.+|.+.+++++|+..|++..+.. -+.|-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 44444445556667889999999999888753222 2222 345677788899999999998886532 123444
Q ss_pred HHHHHHH--cC---------------C---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 044791 349 MINGYAD--NG---------------L---GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEF 408 (623)
Q Consensus 349 Li~~~~~--~g---------------~---~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~ 408 (623)
.+.|++. .+ + ..+|+..|+++++ -|=...-..+|...+..+....
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDRL 174 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHHH
Confidence 4444331 11 1 1234444444443 3333334455544333333210
Q ss_pred CCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 044791 409 GISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT----AEFWEALRNYARIHGDIDLEDHAEELMV 474 (623)
Q Consensus 409 g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd----~~ty~~Li~a~~~~g~~~~A~~~~~~~~ 474 (623)
...--.+..-|.+.|.+..|..=|+.++.--|+ ......|+.+|...|..++|..+...+.
T Consensus 175 -----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 -----AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -----HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 001113556688889988888888875543443 3566678889999999998887777664
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.099 Score=51.95 Aligned_cols=137 Identities=15% Similarity=0.006 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHH-
Q 044791 344 DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVG- 422 (623)
Q Consensus 344 ~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~- 422 (623)
...++++..+.-.|++.-.+.++.+..+..-+-+......|++.-...||++.|...|++..+. .-+.+..+++.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence 3567788888888999999999999999776778888888888888999999999999988866 44556666666553
Q ss_pred ----HHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC
Q 044791 423 ----VLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKA 481 (623)
Q Consensus 423 ----~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~ 481 (623)
.|.-.+++.+|...|++++...+ |.+.-|.-.-+..-.|+..+|.+.++.+.+..|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 35567889999999988444333 555555544455556889888888888887766543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.023 Score=57.75 Aligned_cols=100 Identities=15% Similarity=0.168 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-Cccchhh
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE----QTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLG 419 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~----~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~ 419 (623)
.|...+..+.+.|++++|+..|+.+++.. |+. ..+-.+..+|...|++++|...|+.+.+.+.-.+ ....+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 46655555566788888888888887753 332 3556677777788888888888888875433222 1233334
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 044791 420 LVGVLGKCGHLFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 420 Li~~~~k~g~~e~A~~lf~~~m~~~Pd 446 (623)
+...|.+.|+.++|.++|++.+...|+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 555666778888888888774444444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.21 Score=48.78 Aligned_cols=45 Identities=16% Similarity=-0.014 Sum_probs=23.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCChh
Q 044791 420 LVGVLGKCGHLFEAQQFIEQKLPFEPTA----EFWEALRNYARIHGDID 464 (623)
Q Consensus 420 Li~~~~k~g~~e~A~~lf~~~m~~~Pd~----~ty~~Li~a~~~~g~~~ 464 (623)
+..-|.+.|.+..|..-|+.++..-|+. ...-.|+.+|.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 4555666666666666666644433433 23455555666666655
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.42 Score=45.29 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCCHHHH
Q 044791 309 RGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD----RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLG---LQPNEQTF 381 (623)
Q Consensus 309 ~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~----~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g---~~Pd~~ty 381 (623)
.|++.---.|..++.+.|+..||...|++... .|....-.+..+....+++.+|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 34444444555556666666666666655442 244445555555555566666666665555432 1122 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHH
Q 044791 382 LAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQ 434 (623)
Q Consensus 382 ~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~ 434 (623)
..+.+++...|+.+.|+.-|+... .+-|+...-.-....+.+.|+.++|.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~---~~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAI---SYYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHH---HhCCCHHHHHHHHHHHHHhcchhHHH
Confidence 334455555566666666665555 23343333223334455555555443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.32 Score=48.95 Aligned_cols=176 Identities=12% Similarity=0.034 Sum_probs=106.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHc--CCCCCHH-H---HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 249 SVADLARLCQEGKVKEAIELMDK--GVKADAS-C---FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMY 322 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~~--~~~pd~~-t---y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y 322 (623)
.......+...|++++|++.|++ ...|+.. . .-.++.++.+.+++++|...+++.++.-..-...-|...+.++
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 33556667789999999999975 3344432 2 3456788899999999999999999863221123333344443
Q ss_pred HH--cC---------------CH---HHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 044791 323 GK--CG---------------SM---TDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFL 382 (623)
Q Consensus 323 ~k--~g---------------~~---~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~ 382 (623)
+. .+ +. .+|+..|+ .+|.-|=...-..+|...+..+... =..--.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~-----------~li~~yP~S~ya~~A~~rl~~l~~~----la~~e~ 179 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFS-----------KLVRGYPNSQYTTDATKRLVFLKDR----LAKYEL 179 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHH-----------HHHHHCcCChhHHHHHHHHHHHHHH----HHHHHH
Confidence 31 11 11 23333333 4444444444455555544444321 001112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 383 AVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 383 ~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
.+..-|.+.|.+..|..-|+.+++++.-.+ .......|+.+|.+.|..++|..+...
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 455667778888888888888886654333 344555677888888888888776655
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.49 Score=44.85 Aligned_cols=128 Identities=13% Similarity=0.085 Sum_probs=97.2
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhH
Q 044791 341 RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGL 420 (623)
Q Consensus 341 ~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~L 420 (623)
+.+..--.|..++.+.|++.||...|++....=+.-|......+..+....++...|...++.+.+...-.-...+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 45556667889999999999999999999876566688888889999999999999999999988542111123344566
Q ss_pred HHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 044791 421 VGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDH 468 (623)
Q Consensus 421 i~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~ 468 (623)
...|...|+.+.|+.-|+.++...|+...-...-..+++.|+.+++..
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 788999999999999999977777776443333345567887776644
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.02 Score=46.25 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 044791 380 TFLAVFSACGSADAIEEAFIHFES 403 (623)
Q Consensus 380 ty~~li~a~~~~g~~e~A~~l~~~ 403 (623)
+++.+..+|...|++++|++++++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333444444444444444444433
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.5 Score=46.15 Aligned_cols=246 Identities=13% Similarity=0.047 Sum_probs=149.6
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCCH-HHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKADA-SCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd~-~ty~ 281 (623)
-.|+++.|.+-|+.|.. +..+..+. .-.|.-.--+.|..+.|...-+. +..|.. -.+.
T Consensus 132 ~eG~~~~Ar~kfeAMl~-------dPEtRllG------------LRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~ 192 (531)
T COG3898 132 LEGDYEDARKKFEAMLD-------DPETRLLG------------LRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAAR 192 (531)
T ss_pred hcCchHHHHHHHHHHhc-------ChHHHHHh------------HHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 58999999999998843 11111100 11333344577888888777654 555654 4677
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHHHHHHH---cCCHHHHHHHHHHhh--cCChH-HHHHHHHH
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQST-IRGDLVL--NNKVIEMYGK---CGSMTDARRVFDHMA--DRSMD-SWHLMING 352 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~--y~~Li~~y~k---~g~~~~A~~lf~~m~--~~~~~-tyn~Li~~ 352 (623)
.++...|..|+++.|+++++.-+... +.+|+.- -..|+.+-+. ..+...|...-.+.. .+|.+ .--.-..+
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAra 272 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARA 272 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHH
Confidence 88889999999999999998766542 3444321 2223222111 123333443333332 34544 33444567
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e 431 (623)
|.+.|+..++-.+++.+-+....|+... +-.+.+.|+. +..-+++.++-..++| +.++-.++..+-...|++.
T Consensus 273 lf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 273 LFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 9999999999999999998866666531 2233455543 3333333332224445 4566667778888889988
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCChhHHHHHHHHHHh
Q 044791 432 EAQQFIEQKLPFEPTAEFWEALRNYA-RIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 432 ~A~~lf~~~m~~~Pd~~ty~~Li~a~-~~~g~~~~A~~~~~~~~~ 475 (623)
.|..--+......|....|-.|.+.- +..||-+++...+.....
T Consensus 347 ~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 347 AARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 87776666445678888998888854 455888866555554443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.069 Score=48.90 Aligned_cols=71 Identities=21% Similarity=0.355 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hcCCCCCccc
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS----EFGISPGTEH 416 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~----~~g~~p~~~t 416 (623)
+...++..+...|++++|+.+.+.+.... .-|...|..+|.+|...|+..+|.++|+.+.. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 56667777778888888888888888753 22677888888888888888888888876653 3466666543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.21 E-value=1.3 Score=45.55 Aligned_cols=220 Identities=12% Similarity=0.070 Sum_probs=118.0
Q ss_pred cCCChHHHHHHHHHhcCCC--CCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcC-CHHHHHHHHHc----------
Q 044791 205 QNQGYPQARNSYQQVSPGH--QIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEG-KVKEAIELMDK---------- 271 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~---------- 271 (623)
++|+++.|..+|.+..... ..|+.... ....+..+.......+ ++++|...+++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~-------------La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~ 71 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEE-------------LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK 71 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHH-------------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh
Confidence 5899999999999884422 11111111 1123445555566666 88888776642
Q ss_pred --CCCCCH-----HHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 044791 272 --GVKADA-----SCFYTLFELCGNPKWYE---NAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR 341 (623)
Q Consensus 272 --~~~pd~-----~ty~~Ll~~~~~~g~~~---~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~ 341 (623)
...++. .++..|+.+|...+..+ +|..+++.+.+.... ...++-.-+..+.+.++.+++.+++.+|...
T Consensus 72 ~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 72 MDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 122333 45667777777766544 455566666544221 2445555566666688888888888888643
Q ss_pred -C--hHHHHHHHHHH---HHcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHH---HHHhc------CCHHHHHHHHHHH
Q 044791 342 -S--MDSWHLMINGY---ADNGLGDEGLQLFEQMRKLGLQPNEQTF--LAVFS---ACGSA------DAIEEAFIHFESM 404 (623)
Q Consensus 342 -~--~~tyn~Li~~~---~~~g~~eeA~~l~~eM~~~g~~Pd~~ty--~~li~---a~~~~------g~~e~A~~l~~~m 404 (623)
+ ...+..++..+ ... ....|...+..++...+.+....+ ..++. ..... .+++...++++.+
T Consensus 151 ~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v 229 (278)
T PF08631_consen 151 VDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIV 229 (278)
T ss_pred cccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHH
Confidence 2 23455555554 332 345677777777765555554311 11111 11111 1244555555544
Q ss_pred HhhcCCCCCccchhhHHHH-------HHhcCCHHHHHHHHHh
Q 044791 405 KSEFGISPGTEHYLGLVGV-------LGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 405 ~~~~g~~p~~~ty~~Li~~-------~~k~g~~e~A~~lf~~ 439 (623)
.+..+...+..+-.++... +.+.+++++|.++|+-
T Consensus 230 ~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 230 EHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 4333334444443333322 4445677777777764
|
It is also involved in sporulation []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.1 Score=41.87 Aligned_cols=196 Identities=19% Similarity=0.174 Sum_probs=142.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcCC-----CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKGV-----KADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIE- 320 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~~-----~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~- 320 (623)
.........+...+.+..+...+.... ......+..+...+...+++..+.+++.......... .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 344566778889999999998886532 3344567777888888888999999999988754433 222333333
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCh------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044791 321 MYGKCGSMTDARRVFDHMADRSM------DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAI 394 (623)
Q Consensus 321 ~y~k~g~~~~A~~lf~~m~~~~~------~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~ 394 (623)
++...|++++|...|++....+. ..+......+...+++++|+..+.++......-....+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 78999999999999998755332 244444555778899999999999998763221467788888889999999
Q ss_pred HHHHHHHHHHHhhcCCCCC-ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 044791 395 EEAFIHFESMKSEFGISPG-TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 395 e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd 446 (623)
+.|...+...... .++ ...+..+...+...|..++|...+.+.....|+
T Consensus 219 ~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALEL---DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhh---CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999988843 333 334455555555777899999999885555555
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.023 Score=44.16 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=8.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQM 369 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM 369 (623)
|..+..++...|++++|..+|+++
T Consensus 34 ~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 34 WYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333333
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.056 Score=49.52 Aligned_cols=69 Identities=22% Similarity=0.423 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHH-----HcCCCCCHHHH
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMR-----KLGLQPNEQTF 381 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~-----~~g~~Pd~~ty 381 (623)
.+...++..+...|++++|+.+.+.+... +...|..+|.+|...|+..+|+++|+++. +.|+.|+..|-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34566777888899999999999998764 44599999999999999999999999885 46999987764
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.24 Score=49.32 Aligned_cols=138 Identities=9% Similarity=-0.040 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH---
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMADRS----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFS--- 386 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~~~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~--- 386 (623)
+.+.+++++.-.|.+.-.+.++.+..+++ .+.-..|+..-...|+.+.|...|++..+..-+.|..+++.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34455555555566666666666655543 33444555555556777777777776654433444444444432
Q ss_pred --HHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHH
Q 044791 387 --ACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEAL 453 (623)
Q Consensus 387 --a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~L 453 (623)
.|.-++++.+|...|.++..... -|+..-|.-.-++.-.|+..+|++.++.+.+..|...+-+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhH
Confidence 34445667777777766663211 133333333333344577777777777755556655444433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.019 Score=44.67 Aligned_cols=59 Identities=29% Similarity=0.290 Sum_probs=36.1
Q ss_pred HHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 421 VGVLGKCGHLFEAQQFIEQKLPFEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 421 i~~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
...+.+.|++++|+++|++++...|+ ...|..+..++...|++++|...++.+.+..|+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 44566666677777777665555553 345556666666667777666666666665554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.76 Score=51.43 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=41.7
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCC-C----HHHHHHHHHHHhCCCCHHHHHHHHHH-------------------HH--Hc
Q 044791 253 LARLCQEGKVKEAIELMDKGVKA-D----ASCFYTLFELCGNPKWYENAKKVHDY-------------------FL--QS 306 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~~~p-d----~~ty~~Ll~~~~~~g~~~~A~~l~~~-------------------m~--~~ 306 (623)
|..+.+.|+|-...++++.|-.- | ..+|+.+...++....+++|.+.|.. +. ..
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~ 846 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLAR 846 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHH
Confidence 44455666666666666543221 1 13455555555544444444444332 11 11
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044791 307 TIRGDLVLNNKVIEMYGKCGSMTDARRVFDH 337 (623)
Q Consensus 307 g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~ 337 (623)
.++-|....-.|..++.+.|.-++|.+.|-+
T Consensus 847 ~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 847 TLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 1233444445556666666666666655543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.089 Score=53.55 Aligned_cols=96 Identities=11% Similarity=0.049 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhc--CCh----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--CCHHHHHH
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMAD--RSM----DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ--PNEQTFLA 383 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--~~~----~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~--Pd~~ty~~ 383 (623)
...|...+..+.+.|++++|+..|+.+.+ ++. ..+-.+..+|...|++++|...|+.+.+.-.. -....+-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 45666666666777999999999998875 222 36778888899999999999999999865211 12344455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 384 VFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 384 li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
+...+...|+.++|..+|+.+++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666777889999999999988865
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.021 Score=44.68 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=18.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
.|++++|+++|+++.+.... +...+..+..+|.+.|++++|..+++.+.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444333111 23333334444444444444444444333
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.013 Score=45.84 Aligned_cols=64 Identities=23% Similarity=0.243 Sum_probs=50.7
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 044791 389 GSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRN 455 (623)
Q Consensus 389 ~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~ 455 (623)
...|++++|+++|+.+... .| +...+..|..+|.+.|++++|.+++++.....|+...|..|+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 4679999999999999854 34 6677778999999999999999999995556788666665543
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.029 Score=44.10 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=10.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
|..+...+...|++++|+..|++.++
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~ 31 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIE 31 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333344444444444444444333
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.58 Score=45.62 Aligned_cols=178 Identities=16% Similarity=0.132 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHc------CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 249 SVADLARLCQEGKVKEAIELMDK------GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMY 322 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~~------~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y 322 (623)
.......+...|++++|++.|++ +-.--....-.++.++.+.|+++.|...++++++.-..-...-+...+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33445556677777777777753 111112344566667777777777777777766642111112233333333
Q ss_pred HHcCCHHHHHHHHHHhhcCCh-------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044791 323 GKCGSMTDARRVFDHMADRSM-------DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIE 395 (623)
Q Consensus 323 ~k~g~~~~A~~lf~~m~~~~~-------~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e 395 (623)
+......... +..+|. ..+..+|.-|=.....++|...+.++.+. =...-..+...|.+.|.+.
T Consensus 88 ~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 88 SYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HH
T ss_pred HHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHH
Confidence 2222222211 112221 25666666666666666666655555432 0111223567789999999
Q ss_pred HHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHH
Q 044791 396 EAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQ 435 (623)
Q Consensus 396 ~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~ 435 (623)
.|..-++.+++.+.-.+ .....-.|+.+|.+.|..+.|..
T Consensus 159 aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 159 AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999997643322 12355678888999998885543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.025 Score=44.45 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHh
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG-SMTDARRVFDHM 338 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g-~~~~A~~lf~~m 338 (623)
.+|..+...+...|++++|+..|++.++.. +-+...|..+..+|.+.| ++++|++.|++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 344444444444444444444444444432 113344444444444444 344444444443
|
... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.48 Score=51.41 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=25.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
..++.+.|+.++|.++|.+|.+.....-+..+...||.+|...+.+.++..++.+
T Consensus 266 AmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 266 AMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3334445555555555555543322211223344455555555555555555544
|
The molecular function of this protein is uncertain. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.71 E-value=2.3 Score=48.32 Aligned_cols=308 Identities=13% Similarity=0.026 Sum_probs=170.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCC---HHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKAD---ASCFYTLFELCGNPKWY--ENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd---~~ty~~Ll~~~~~~g~~--~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~ 325 (623)
.+|..+...+.+..|+++-+-.-.|. ...|.....-+.+..+. +++.+..++=++... -+..+|..+..-...+
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhc
Confidence 55667777777777777654211222 34455555555544221 223333322222222 3456788888888889
Q ss_pred CCHHHHHHHHHHhhcC--------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC----------CCCH-HHHHHHHH
Q 044791 326 GSMTDARRVFDHMADR--------SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGL----------QPNE-QTFLAVFS 386 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~--------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~----------~Pd~-~ty~~li~ 386 (623)
|+.+-|..+++.=... +..-+...+.-+...|+.+-...++-.|+.+-. .|.. -.|.-+++
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r 600 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMR 600 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 9999999988743221 222566777777888888888777777664311 1111 11111111
Q ss_pred --------HHHhcCCHHHHHHHHHHH--Hh---hcCCCCCccchhhHHHHHHhcCCHHHHH----------HHHHhhCC-
Q 044791 387 --------ACGSADAIEEAFIHFESM--KS---EFGISPGTEHYLGLVGVLGKCGHLFEAQ----------QFIEQKLP- 442 (623)
Q Consensus 387 --------a~~~~g~~e~A~~l~~~m--~~---~~g~~p~~~ty~~Li~~~~k~g~~e~A~----------~lf~~~m~- 442 (623)
.+..+++.-.+...|..- .+ ..+..|+. .....++.+.....-.. .+++. ++
T Consensus 601 ~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~-Le~ 676 (829)
T KOG2280|consen 601 HQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRT-LED 676 (829)
T ss_pred hhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH-HHH
Confidence 111222222222222110 00 01222222 22334444443311111 11111 22
Q ss_pred ---CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHH
Q 044791 443 ---FEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDE 519 (623)
Q Consensus 443 ---~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~e 519 (623)
..-...+.+--+.-+...|....|.++...++- ||+..|..=+.+++..++| ++
T Consensus 677 q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki---------------pdKr~~wLk~~aLa~~~kw--------ee 733 (829)
T KOG2280|consen 677 QFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI---------------PDKRLWWLKLTALADIKKW--------EE 733 (829)
T ss_pred HhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC---------------cchhhHHHHHHHHHhhhhH--------HH
Confidence 111223444455556667888766666665533 8899999999999999998 34
Q ss_pred HHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCCCChhHHHhhHhhhcchhHHHHHHHHHhCC
Q 044791 520 KLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGR 599 (623)
Q Consensus 520 al~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~~~~~i~~~l~~~g~~~~a~~l~~~~~~~ 599 (623)
-+++-+.++. ..-|.-.++ .+.+.|..+||.+.+.+..+.. .-.+++..+|+..+|.++..+-.+.
T Consensus 734 LekfAkskks------PIGy~PFVe-------~c~~~~n~~EA~KYiprv~~l~-ekv~ay~~~~~~~eAad~A~~~rd~ 799 (829)
T KOG2280|consen 734 LEKFAKSKKS------PIGYLPFVE-------ACLKQGNKDEAKKYIPRVGGLQ-EKVKAYLRVGDVKEAADLAAEHRDG 799 (829)
T ss_pred HHHHHhccCC------CCCchhHHH-------HHHhcccHHHHhhhhhccCChH-HHHHHHHHhccHHHHHHHHHHhcCh
Confidence 4444455541 233444454 6778999999999998887755 5788999999999999977665444
Q ss_pred c
Q 044791 600 E 600 (623)
Q Consensus 600 ~ 600 (623)
+
T Consensus 800 ~ 800 (829)
T KOG2280|consen 800 A 800 (829)
T ss_pred H
Confidence 3
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.25 Score=52.44 Aligned_cols=169 Identities=11% Similarity=0.066 Sum_probs=106.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhcCCCCCccchhhHH
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKLG---LQPNEQTFLAVFSACGS---ADAIEEAFIHFESMKSEFGISPGTEHYLGLV 421 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~g---~~Pd~~ty~~li~a~~~---~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li 421 (623)
.|+-.|....+++..+++++.|...- +.-....--...-|+.+ .|+.++|+.++..+... .-.++..+|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHH
Confidence 45556999999999999999998751 11111111233445566 89999999999996544 5556777888777
Q ss_pred HHHHh---------cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-hh---HHHHHHHHHHh-cCCCCCCCCCCC
Q 044791 422 GVLGK---------CGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGD-ID---LEDHAEELMVD-LDPSKADPKKIP 487 (623)
Q Consensus 422 ~~~~k---------~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~-~~---~A~~~~~~~~~-m~~~~~~~~~~~ 487 (623)
..|-. ...+++|++.|.++.++.||..+=-.++..+...|. .+ +..++.-.+.. +..++. .
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~-----~ 299 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS-----L 299 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc-----c
Confidence 66543 235889999999988888876433333333334443 22 12222211111 112222 1
Q ss_pred CCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHC
Q 044791 488 TPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKES 530 (623)
Q Consensus 488 ~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~ 530 (623)
+...+..-+.++++++.-.++. ++|.+..+.|.+.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~--------~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDY--------EKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCH--------HHHHHHHHHHhhc
Confidence 2236677777889998888887 6888888888755
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.025 Score=59.20 Aligned_cols=257 Identities=10% Similarity=-0.022 Sum_probs=158.4
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--------CCCC-
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--------GVKA- 275 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--------~~~p- 275 (623)
+.|++..-+.+|+.....+.. .+. ....+|.-|..+|.-.+++++|+++... |-+.
T Consensus 29 k~gdcraGv~ff~aA~qvGTe--Dl~-------------tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklG 93 (639)
T KOG1130|consen 29 KMGDCRAGVDFFKAALQVGTE--DLS-------------TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLG 93 (639)
T ss_pred hccchhhhHHHHHHHHHhcch--HHH-------------HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhc
Confidence 678888888888876332110 000 0123455677788888899999987521 1111
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHH----HHHcCCC-CCHHHHHHHHHHHHHcCC--------------------HHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDY----FLQSTIR-GDLVLNNKVIEMYGKCGS--------------------MTD 330 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~----m~~~g~~-pd~~~y~~Li~~y~k~g~--------------------~~~ 330 (623)
...+...|.+.+--.|.+++|+-+..+ ..+.|-. .....+-.|.+.|...|+ ++.
T Consensus 94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~ 173 (639)
T KOG1130|consen 94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN 173 (639)
T ss_pred cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence 112333444455555666666544322 2222211 123455567778876553 334
Q ss_pred HHHHHHHhhc----C-Ch----HHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHhcCCHHH
Q 044791 331 ARRVFDHMAD----R-SM----DSWHLMINGYADNGLGDEGLQLFEQMRK----LGLQP-NEQTFLAVFSACGSADAIEE 396 (623)
Q Consensus 331 A~~lf~~m~~----~-~~----~tyn~Li~~~~~~g~~eeA~~l~~eM~~----~g~~P-d~~ty~~li~a~~~~g~~e~ 396 (623)
|.+.|.+=.+ . |. .+|..|.+.|.-.|+++.|+...+.-++ -|-+. ....+..|..++.-.|.++.
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence 5555543221 1 11 2788899999999999999987665432 23222 23578889999999999999
Q ss_pred HHHHHHHHHhh---c-CCCCCccchhhHHHHHHhcCCHHHHHHHHHh--hC----C-CCCCHHHHHHHHHHHHHcCChhH
Q 044791 397 AFIHFESMKSE---F-GISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ--KL----P-FEPTAEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 397 A~~l~~~m~~~---~-g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~--~m----~-~~Pd~~ty~~Li~a~~~~g~~~~ 465 (623)
|.+.|+....- . .......+.-+|.+.|.-..++++|+.++.+ ++ + ..-....|-+|.++|...|..+.
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence 99998765421 1 1223444566788888888899999999887 22 1 22245788889999999999888
Q ss_pred HHHHHHHHHhc
Q 044791 466 EDHAEELMVDL 476 (623)
Q Consensus 466 A~~~~~~~~~m 476 (623)
|....+.-.+.
T Consensus 334 Al~fae~hl~~ 344 (639)
T KOG1130|consen 334 ALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHH
Confidence 87766665443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.02 Score=46.26 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---------C-hHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMADR---------S-MDSWHLMINGYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---------~-~~tyn~Li~~~~~~g~~eeA~~l~~eM~ 370 (623)
..+|+.+..+|.+.|++++|+..|++..+. + ..+|+.|..+|...|++++|+++|++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356778888888888888888888776531 1 2377888888888888888888887754
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.095 Score=57.75 Aligned_cols=84 Identities=18% Similarity=0.072 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC-CCCCHH----------
Q 044791 380 TFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-FEPTAE---------- 448 (623)
Q Consensus 380 ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-~~Pd~~---------- 448 (623)
+...+...+.+...+..|-++|..|-. ...++++....++|.+|..+-++ .. ..+|+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~-hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEK-HPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhh-CccccccccchHHHHhhhh
Confidence 444444445555666677777766642 13466777777777777777777 43 444441
Q ss_pred -HHHHHHHHHHHcCChhHHHHHHHHHH
Q 044791 449 -FWEALRNYARIHGDIDLEDHAEELMV 474 (623)
Q Consensus 449 -ty~~Li~a~~~~g~~~~A~~~~~~~~ 474 (623)
-|.-.-.+|.+.|+-.+|..+++.+.
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 12223346667777776666655543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.084 Score=47.35 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHH
Q 044791 373 GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVL 424 (623)
Q Consensus 373 g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~ 424 (623)
.+.|+..+..+++.+|+..|++..|+++++...+.+++..+..+|..|+.=.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3567788888888888888888888888888887777777777777776543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.12 Score=55.77 Aligned_cols=61 Identities=7% Similarity=-0.205 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDL----VLNNKVIEMYGKCGSMTDARRVFDHMAD 340 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~y~~Li~~y~k~g~~~~A~~lf~~m~~ 340 (623)
..++.+..+|.+.|++++|+..|++.++. .|+. .+|.++..+|.+.|++++|+..|++..+
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555555555555555542 2331 2355555555555555555555555444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.87 Score=48.23 Aligned_cols=115 Identities=11% Similarity=0.011 Sum_probs=88.3
Q ss_pred HcCCHHHHHHHHHcCCCCCHHHHH---------------HHHHHHhCCCCHHHHHHHHHHHHHc---CCCCCHHHHHHHH
Q 044791 258 QEGKVKEAIELMDKGVKADASCFY---------------TLFELCGNPKWYENAKKVHDYFLQS---TIRGDLVLNNKVI 319 (623)
Q Consensus 258 ~~g~~~~A~~l~~~~~~pd~~ty~---------------~Ll~~~~~~g~~~~A~~l~~~m~~~---g~~pd~~~y~~Li 319 (623)
-.++.+.|...|.+++..|..... .-.+-..+.|++.+|.+.|.+.+.. .+.+++..|....
T Consensus 215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra 294 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA 294 (486)
T ss_pred cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence 467888999999887776653322 1223446789999999999999875 3556778888888
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCChH---HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 320 EMYGKCGSMTDARRVFDHMADRSMD---SWHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 320 ~~y~k~g~~~~A~~lf~~m~~~~~~---tyn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
.+..+.|+.++|+.--++..+.|.. .|-.-..++...++|++|.+-|+...+.
T Consensus 295 ~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 295 LVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988887765 4444455677788899999999887764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.57 Score=51.93 Aligned_cols=23 Identities=17% Similarity=-0.078 Sum_probs=11.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 044791 384 VFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 384 li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
+.-.+.-.+++++|.+.|..+.+
T Consensus 311 l~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 311 LAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHchHHHHHHHHHHHHh
Confidence 33344444555555555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.029 Score=58.22 Aligned_cols=8 Identities=38% Similarity=0.663 Sum_probs=3.4
Q ss_pred CCCCCCcc
Q 044791 74 RAFPDQSN 81 (623)
Q Consensus 74 ~~~~~~~~ 81 (623)
..+|.|.+
T Consensus 400 ~q~~~q~y 407 (462)
T KOG2199|consen 400 AQYPSQSY 407 (462)
T ss_pred cccCcccC
Confidence 33444444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.077 Score=53.18 Aligned_cols=98 Identities=15% Similarity=0.242 Sum_probs=73.1
Q ss_pred HHHHHHHhh--cCChHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----------
Q 044791 331 ARRVFDHMA--DRSMDSWHLMINGYADN-----GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD----------- 392 (623)
Q Consensus 331 A~~lf~~m~--~~~~~tyn~Li~~~~~~-----g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g----------- 392 (623)
.+..|.... ++|-.+|-.++..+... +.+|-....++.|++-|++-|..+|+.||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555554 56666777777766543 556777778888888899889999988888765432
Q ss_pred -----CHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCC
Q 044791 393 -----AIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGH 429 (623)
Q Consensus 393 -----~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~ 429 (623)
.-+-++.++++|. .+|+.||-++-..||+++++.|-
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccc
Confidence 2356789999998 55999999999999999998775
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.25 Score=52.54 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQST-IRGDLVLNNKVIEMYGKCGSMTDARRVFD 336 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~y~~Li~~y~k~g~~~~A~~lf~ 336 (623)
|..+|++..+...++.|..+|-++.+.| +.+++++++++|.-+|. |+..-|.++|+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ife 456 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFE 456 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHH
Confidence 4444444444444555555555555544 33444555555544432 34444444444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.93 Score=41.06 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044791 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 281 ~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~ 325 (623)
..++..+...+.......+++.+.+.+. .+...++.||..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 3445555555555666666665555542 3555555566665554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.58 Score=42.44 Aligned_cols=122 Identities=15% Similarity=0.221 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044791 316 NKVIEMYGKCGSMTDARRVFDHMADRS---MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD 392 (623)
Q Consensus 316 ~~Li~~y~k~g~~~~A~~lf~~m~~~~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g 392 (623)
..+|..+.+.+....+..+++.+...+ ...+|.+|..|++.+ .++.++.+.. ..+.+....+++.|.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 345666666666677777766665432 336666777776653 2444444442 123334444666666667
Q ss_pred CHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhc-CCHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 044791 393 AIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKC-GHLFEAQQFIEQKLPFEPTAEFWEALRNYAR 458 (623)
Q Consensus 393 ~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~-g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~ 458 (623)
.++++..++..+.. |...+..+... ++.+.|.+++.+ .-+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~----~~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK----QNNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh----CCCHHHHHHHHHHHH
Confidence 77777766665531 22233444433 667777777766 235556666666554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.073 Score=42.21 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=26.3
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 044791 423 VLGKCGHLFEAQQFIEQKLPFEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 423 ~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~ 478 (623)
.|.+.+++++|.+++++++...|+ ...|......+...|++++|.+.++.+.++.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 344455555555555554443332 23344444444555555555555555544443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.085 Score=41.82 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=26.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 352 GYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 352 ~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
.|.+.+++++|+++++++++.+.. +...+.....++...|++++|.+.|+...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445555555555555555554211 33344444445555555555555555554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.84 Score=49.33 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=56.0
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCCH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 044791 242 GDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKADA----SCFYTLFELCGNPKWYENAKKVHDYFLQS 306 (623)
Q Consensus 242 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 306 (623)
.+.....++++..+|.+.|++++|+..|++ .+.|+. .+|..+..+|...|++++|++.+++.++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344667788999999999999999999987 455764 35999999999999999999999999885
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.66 Score=46.73 Aligned_cols=118 Identities=16% Similarity=0.211 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHH
Q 044791 274 KADASCFYTLFELCGN-----PKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHL 348 (623)
Q Consensus 274 ~pd~~ty~~Ll~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~ 348 (623)
+.|-.+|-..+..+.. .+.++-....++.|.+-|+..|..+|+.||+.+-|..-+-. .+|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~---------- 131 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKV---------- 131 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHH----------
Confidence 4566666666665543 46777777788899999999999999999998876443221 122211
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA-IEEAFIHFESMKS 406 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~-~e~A~~l~~~m~~ 406 (623)
.--|-+ +-+-+++++++|...|+.||-.+-..|+.++++.+- ..+..++.-.|-+
T Consensus 132 -F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 132 -FLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred -HhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 111222 235688999999999999999999999999998775 3445555555553
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.65 E-value=7.1 Score=41.34 Aligned_cols=187 Identities=16% Similarity=0.132 Sum_probs=101.1
Q ss_pred cCCHHHHHHHHHc---CCCCCHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHH
Q 044791 259 EGKVKEAIELMDK---GVKADASCFYTLFELC--GNPKWYENAKKVHDYFLQSTIRGDLVLN--NKVIEMYGKCGSMTDA 331 (623)
Q Consensus 259 ~g~~~~A~~l~~~---~~~pd~~ty~~Ll~~~--~~~g~~~~A~~l~~~m~~~g~~pd~~~y--~~Li~~y~k~g~~~~A 331 (623)
.|+-..|.++-.+ -+.-|......|+.+- .-.|++++|.+-|+-|... |..... ..|.-.--+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 4555555555432 3445555555555543 3468889999999888662 222221 2233333466788888
Q ss_pred HHHHHHhhcC--ChH-HHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHHh---cCCHHHHHHHHH
Q 044791 332 RRVFDHMADR--SMD-SWHLMINGYADNGLGDEGLQLFEQMRKLG-LQPNEQ--TFLAVFSACGS---ADAIEEAFIHFE 402 (623)
Q Consensus 332 ~~lf~~m~~~--~~~-tyn~Li~~~~~~g~~eeA~~l~~eM~~~g-~~Pd~~--ty~~li~a~~~---~g~~e~A~~l~~ 402 (623)
...-++.-+. ... .+..++...|..|+++.|+++++.-++.. +.+++. .--.|+.+-+. .-+...|...-.
T Consensus 174 r~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 174 RHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 7777766443 222 78888899999999999999988776433 344432 11222222111 112233333222
Q ss_pred HHHhhcCCCCCccchhh-HHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHH
Q 044791 403 SMKSEFGISPGTEHYLG-LVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWE 451 (623)
Q Consensus 403 ~m~~~~g~~p~~~ty~~-Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~ 451 (623)
+.. .+.||..--.. -..+|.+.|++.++-.+++.+.+.+|....+.
T Consensus 254 ~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~ 300 (531)
T COG3898 254 EAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL 300 (531)
T ss_pred HHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH
Confidence 222 44444332211 12446666666666666666445555554443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=1.9 Score=46.75 Aligned_cols=154 Identities=14% Similarity=0.106 Sum_probs=103.3
Q ss_pred HHH--HHHHHHHHHc-----CCHHHHHHHHHHhh---cCC---hHHHHHHHHHHHH---------cCChHHHHHHHHHHH
Q 044791 313 VLN--NKVIEMYGKC-----GSMTDARRVFDHMA---DRS---MDSWHLMINGYAD---------NGLGDEGLQLFEQMR 370 (623)
Q Consensus 313 ~~y--~~Li~~y~k~-----g~~~~A~~lf~~m~---~~~---~~tyn~Li~~~~~---------~g~~eeA~~l~~eM~ 370 (623)
..| ..++.+.... -..+.|+.+|.+.. +.| ...|..+..++.. ..+..+|.++-++.+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 6666666653 24678889999888 555 3344444443322 234567777777777
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc-cchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH--
Q 044791 371 KLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGT-EHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-- 447 (623)
Q Consensus 371 ~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~-~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-- 447 (623)
+.+- -|..+...+..+....++++.|...|++.. .+.||. .+|......+.-+|+.++|.+.+++++...|.-
T Consensus 332 eld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 332 DITT-VDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred hcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 7653 377888888888888888999999999887 677763 344444555666899999999999988877744
Q ss_pred -HHHHHHHHHHHHcCChhHHHHHHH
Q 044791 448 -EFWEALRNYARIHGDIDLEDHAEE 471 (623)
Q Consensus 448 -~ty~~Li~a~~~~g~~~~A~~~~~ 471 (623)
......|+.|+.+ .+|.|.+.+-
T Consensus 408 ~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 408 AVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHcCC-chhhhHHHHh
Confidence 3444455566644 4555555543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.43 E-value=1.3 Score=48.30 Aligned_cols=143 Identities=10% Similarity=0.068 Sum_probs=76.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHcC--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 044791 251 ADLARLCQEGKVKEAIELMDKG--VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSM 328 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~--~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~ 328 (623)
.+|...-+..+...-+++-++. +.||..+.-+|+ +--....+.+|+++|++.++.|-. ..-...... ..|.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~--~lg~s~~~~---~~g~- 245 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA--SLGKSQFLQ---HHGH- 245 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH--hhchhhhhh---cccc-
Confidence 4455555666666655555543 345543322222 222345689999999998876411 000000110 1111
Q ss_pred HHHHHHHHHhhcCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044791 329 TDARRVFDHMADRSM----DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFES 403 (623)
Q Consensus 329 ~~A~~lf~~m~~~~~----~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~ 403 (623)
.++.+..++. ..-.-|..++.+.|+.+||+++|++|.+..-.- .....-.||.++...+.+.++..++.+
T Consensus 246 -----~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 246 -----FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred -----hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1111222221 122335556667788888888888887543221 233566777888888888888887776
Q ss_pred HH
Q 044791 404 MK 405 (623)
Q Consensus 404 m~ 405 (623)
..
T Consensus 321 Yd 322 (539)
T PF04184_consen 321 YD 322 (539)
T ss_pred hc
Confidence 53
|
The molecular function of this protein is uncertain. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.37 E-value=2.8 Score=41.90 Aligned_cols=60 Identities=18% Similarity=0.104 Sum_probs=44.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 420 LVGVLGKCGHLFEAQQFIEQKLPFEPTA----EFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 420 Li~~~~k~g~~e~A~~lf~~~m~~~Pd~----~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
+..-|.+.|.+..|..-++++++--|+. ...-.|..+|...|-.++|..+.+.+..-.++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 4566888899988888888855533332 45566777899999999998888888765444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.34 E-value=1 Score=44.50 Aligned_cols=193 Identities=19% Similarity=0.182 Sum_probs=107.5
Q ss_pred HHHHHHcCCHHHHHHHHHc---CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 044791 253 LARLCQEGKVKEAIELMDK---GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMT 329 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~---~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~ 329 (623)
-.+|....++++|-..+.+ +..-+...|.. ++.++.|.-+.++|.+. .--+..|+.-..+|..+|..+
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcc
Confidence 4456666667666665543 22233222221 22345555566665552 222455667777777777777
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc---C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044791 330 DARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL---G--LQPNEQTFLAVFSACGSADAIEEAFIHFESM 404 (623)
Q Consensus 330 ~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~---g--~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m 404 (623)
.|-..+++.-+ ..++-+.++|+.+|.+.... + ...-..-|..+-+.+.+..++++|-..|..-
T Consensus 109 tAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 109 TAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred hHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 77766665421 23444566777776665432 1 0111223444555666777777776555432
Q ss_pred HhhcCCCCCc-------cchhhHHHHHHhcCCHHHHHHHHHhhC--C--CCC-CHHHHHHHHHHHHHcCChhHHHHHH
Q 044791 405 KSEFGISPGT-------EHYLGLVGVLGKCGHLFEAQQFIEQKL--P--FEP-TAEFWEALRNYARIHGDIDLEDHAE 470 (623)
Q Consensus 405 ~~~~g~~p~~-------~ty~~Li~~~~k~g~~e~A~~lf~~~m--~--~~P-d~~ty~~Li~a~~~~g~~~~A~~~~ 470 (623)
. ++..-. ..|.+.|-.|....++..|+.+|+..- + ..+ +..+...||.+|- .||.|.+..+.
T Consensus 177 ~---~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 177 G---VAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred h---hHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 2 211111 234555666777789999999999822 2 222 5578888888885 67877554443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.49 Score=49.99 Aligned_cols=163 Identities=12% Similarity=-0.038 Sum_probs=100.1
Q ss_pred HHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHhhcCChH----------
Q 044791 278 SCFYTLFE-LCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG--KCGSMTDARRVFDHMADRSMD---------- 344 (623)
Q Consensus 278 ~ty~~Ll~-~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~--k~g~~~~A~~lf~~m~~~~~~---------- 344 (623)
.+|-.|-. ++.-.|+.++|..+--..++.. ....+..++++.| -.++.+.|...|++-...|..
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM 245 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh
Confidence 44444333 4455678888887766666642 1233444444433 457788888888877665433
Q ss_pred -----HHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-cc
Q 044791 345 -----SWHLMINGYADNGLGDEGLQLFEQMRKL---GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TE 415 (623)
Q Consensus 345 -----tyn~Li~~~~~~g~~eeA~~l~~eM~~~---g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ 415 (623)
.|..=.+-..+.|.+.+|.+.|.+.+.. .+++++..|.....+..+.|++++|+.--++.. .+++. +.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syik 322 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIK 322 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHH
Confidence 2333344467788888888888888753 355566777777777888888888887776655 33322 11
Q ss_pred chhhHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 044791 416 HYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 416 ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd 446 (623)
.|..-..++...++|++|.+-|+.+|....+
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 1211122334457788888888887764444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.26 E-value=1 Score=49.98 Aligned_cols=180 Identities=17% Similarity=0.105 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-Ch---------HHHHHHHHHHHH----cCC
Q 044791 293 YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR-SM---------DSWHLMINGYAD----NGL 358 (623)
Q Consensus 293 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-~~---------~tyn~Li~~~~~----~g~ 358 (623)
+.-..-+|.-++.. ++|. +..|+...+-.|+-+.+++++.+..+. ++ ..|+.++..++. ...
T Consensus 173 v~~G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~ 248 (468)
T PF10300_consen 173 VYFGFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVP 248 (468)
T ss_pred HHHHHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 55667778888775 5555 335788888889999999999876553 22 167777776655 456
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhcCCC--CCccchhhHHHHHHhcCCHHHHHH
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAV-FSACGSADAIEEAFIHFESMKSEFGIS--PGTEHYLGLVGVLGKCGHLFEAQQ 435 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~l-i~a~~~~g~~e~A~~l~~~m~~~~g~~--p~~~ty~~Li~~~~k~g~~e~A~~ 435 (623)
.++|.++++++.+. -|+...|... .+.+...|++++|++.|++......-. .....+--+.-.+.-..++++|.+
T Consensus 249 ~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 249 LEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 88999999999986 6777766544 334667899999999999766321111 133344456777888999999999
Q ss_pred HHHhhCCCCC-CHHHHHHHHHH-HHHcCCh-------hHHHHHHHHHHhcCC
Q 044791 436 FIEQKLPFEP-TAEFWEALRNY-ARIHGDI-------DLEDHAEELMVDLDP 478 (623)
Q Consensus 436 lf~~~m~~~P-d~~ty~~Li~a-~~~~g~~-------~~A~~~~~~~~~m~~ 478 (623)
.|.+...... .-.+|..+..+ +...|+. ++|.+.++.+-.+..
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 9999444333 33455555543 4467777 666666666655544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.95 Score=46.92 Aligned_cols=126 Identities=11% Similarity=0.227 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHhhcC-------ChHHHHHHHHHHHHcCC-
Q 044791 293 YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK--C----GSMTDARRVFDHMADR-------SMDSWHLMINGYADNGL- 358 (623)
Q Consensus 293 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k--~----g~~~~A~~lf~~m~~~-------~~~tyn~Li~~~~~~g~- 358 (623)
+++.+.+++.|++.|+.-+.++|-+..-.+.. . -.+.+|.++|+.|++. +-.++.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56777889999999999888777664433333 2 2366899999999863 33466666555 2223
Q ss_pred ---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcCCCCCccchhhHH
Q 044791 359 ---GDEGLQLFEQMRKLGLQPN-EQTFLAVFSACGSADA---IEEAFIHFESMKSEFGISPGTEHYLGLV 421 (623)
Q Consensus 359 ---~eeA~~l~~eM~~~g~~Pd-~~ty~~li~a~~~~g~---~e~A~~l~~~m~~~~g~~p~~~ty~~Li 421 (623)
.++++.+|+.+.+.|+..+ ..-+.+-|-+++.... +..+.++++.+.++ |+++....|..|.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 4677888999998887664 3344444445544322 45778889998877 9999888887653
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.81 Score=46.65 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCC-CHHHHH
Q 044791 310 GDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADN---GLGDEGLQLFEQMRKLGLQP-NEQTFL 382 (623)
Q Consensus 310 pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~---g~~eeA~~l~~eM~~~g~~P-d~~ty~ 382 (623)
-|...|-.|...|...|+++.|...|....+ .+...+..+..++... .+-.+|..+|++++.. .| |+.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHH
Confidence 3667777777777777777777777766543 3444455444443332 2245667777777764 33 344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHH
Q 044791 383 AVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVG 422 (623)
Q Consensus 383 ~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~ 422 (623)
.|...+...|++.+|...|+.|.. ..|....+..+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~---~lp~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD---LLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh---cCCCCCchHHHHH
Confidence 555566777777777777777773 3333333444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.88 E-value=3.7 Score=41.14 Aligned_cols=166 Identities=11% Similarity=0.088 Sum_probs=83.9
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc-----CCCCCHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK-----GVKADASC 279 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-----~~~pd~~t 279 (623)
+.|+|++|.+.|+.+.. ..| .++..-.+...++-++-+.+++++|+..+++ +-.||. .
T Consensus 46 ~~gn~~~A~~~fe~l~~--~~p--------------~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-d 108 (254)
T COG4105 46 QKGNYEEAIKYFEALDS--RHP--------------FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-D 108 (254)
T ss_pred hcCCHHHHHHHHHHHHH--cCC--------------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-h
Confidence 88999999999998843 111 1122233444666777788888888877764 333443 2
Q ss_pred HHHHHHHHhCC-------CCHHHHH---HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHH-H-H
Q 044791 280 FYTLFELCGNP-------KWYENAK---KVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDS-W-H 347 (623)
Q Consensus 280 y~~Ll~~~~~~-------g~~~~A~---~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~t-y-n 347 (623)
|..-|.+++.- .|...+. .-|++++.. -||. .=..+|......+. |... + -
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~--d~LA~~Em 171 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLN--DALAGHEM 171 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHH--HHHHHHHH
Confidence 33333333321 2222222 223333322 1111 11111111111111 1111 1 1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKLGLQPN---EQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd---~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
.+..-|.+.|.+..|..-+++|++. ..-+ ...+-.|..+|...|..++|...-.-+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 2345577778888888888888765 2111 2244455666777777777766655554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=1.2 Score=41.58 Aligned_cols=81 Identities=11% Similarity=-0.031 Sum_probs=34.3
Q ss_pred HcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044791 324 KCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIH 400 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l 400 (623)
..|++++|..+|.-+..- +..-|..|..+|-..+++++|+.+|......+. -|...+--+..++...|+.+.|+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHH
Confidence 345555555555544321 222333444444444555555555444433221 1222233333444444455555544
Q ss_pred HHHHH
Q 044791 401 FESMK 405 (623)
Q Consensus 401 ~~~m~ 405 (623)
|+...
T Consensus 128 f~~a~ 132 (165)
T PRK15331 128 FELVN 132 (165)
T ss_pred HHHHH
Confidence 44444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.98 Score=40.50 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 044791 249 SVADLARLCQEGKVKEAIELMD 270 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~ 270 (623)
+.++|.++++.|+++....+++
T Consensus 5 ~~~ii~al~r~g~~~~i~~~i~ 26 (126)
T PF12921_consen 5 LCNIIYALGRSGQLDSIKSYIK 26 (126)
T ss_pred HHHHHHHHhhcCCHHHHHHHHH
Confidence 3466666666666666666654
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.77 E-value=3 Score=42.61 Aligned_cols=111 Identities=16% Similarity=0.170 Sum_probs=72.5
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhcCCCC-Cccch
Q 044791 342 SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS---ADAIEEAFIHFESMKSEFGISP-GTEHY 417 (623)
Q Consensus 342 ~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~---~g~~e~A~~l~~~m~~~~g~~p-~~~ty 417 (623)
|+..|-.|...|...|+++.|..-|....+.- ..+...+..+..++.. ..+-.++..+|+++. ..+| |+.+-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al---~~D~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQAL---ALDPANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH---hcCCccHHHH
Confidence 66688888888888888888888888877641 2234444444444333 234567778888877 3455 44455
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 044791 418 LGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNY 456 (623)
Q Consensus 418 ~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a 456 (623)
.-|...+...|++.+|...|+.++..-|....+..+|..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 556667777888888888888855655655566666553
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.73 E-value=1.6 Score=45.53 Aligned_cols=192 Identities=12% Similarity=0.032 Sum_probs=122.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHc------CCC---CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCC---CHHHHHH
Q 044791 251 ADLARLCQEGKVKEAIELMDK------GVK---ADASCFYTLFELCGNPKWYENAKKVHDYFLQS-TIRG---DLVLNNK 317 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~------~~~---pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-g~~p---d~~~y~~ 317 (623)
.+..+.++.|.+++++..--. ... --..+|-.|.+++.+.-++.+++.+-..-... |..+ --....+
T Consensus 48 ~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~ 127 (518)
T KOG1941|consen 48 CLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLS 127 (518)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhh
Confidence 567778888888888754311 111 11235666666666666666666665544432 2222 1234455
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhc-----CC----hHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCCHHHHHH-
Q 044791 318 VIEMYGKCGSMTDARRVFDHMAD-----RS----MDSWHLMINGYADNGLGDEGLQLFEQMRK----LGLQPNEQTFLA- 383 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~-----~~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~----~g~~Pd~~ty~~- 383 (623)
|.+++.-.+-++++++.|+...+ .| ...|-.|...|.+..++++|+-+..+..+ .|+.--...|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 77778888889999999987643 12 12788899999999999999887766653 233321223333
Q ss_pred ----HHHHHHhcCCHHHHHHHHHHHHhh---cCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 384 ----VFSACGSADAIEEAFIHFESMKSE---FGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 384 ----li~a~~~~g~~e~A~~l~~~m~~~---~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
|.-++...|++..|.+.-++..+- .|-.+ -......+.+.|...|++|.|..-|+.+|+
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 344677788888888877765532 12221 233455678889999999999999998775
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.53 Score=51.61 Aligned_cols=123 Identities=12% Similarity=0.114 Sum_probs=54.0
Q ss_pred HcCCHHHHHHHHH--Hhh-cCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044791 324 KCGSMTDARRVFD--HMA-DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIH 400 (623)
Q Consensus 324 k~g~~~~A~~lf~--~m~-~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l 400 (623)
-.+++++|.++.+ ++. .-...-.+.++.-+-+.|..+.|+.+-.+-.. -.+...+.|+++.|.++
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHH
Confidence 3456666555443 111 11222455555556666666666655433221 12223345666666554
Q ss_pred HHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 044791 401 FESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEEL 472 (623)
Q Consensus 401 ~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~ 472 (623)
-++.. +...|..|.+...+.|+++-|+++|.+ .+ -|..|+-.|...|+.+...++.+.
T Consensus 341 a~~~~-------~~~~W~~Lg~~AL~~g~~~lAe~c~~k-~~------d~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 341 AKELD-------DPEKWKQLGDEALRQGNIELAEECYQK-AK------DFSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp CCCCS-------THHHHHHHHHHHHHTTBHHHHHHHHHH-CT-------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHhcC-------cHHHHHHHHHHHHHcCCHHHHHHHHHh-hc------CccccHHHHHHhCCHHHHHHHHHH
Confidence 43221 334566666666666666666666666 32 234444455555665543333333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.57 Score=47.14 Aligned_cols=101 Identities=19% Similarity=0.162 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc-cchhhHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQ--PNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGT-EHYLGLVG 422 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~--Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~-~ty~~Li~ 422 (623)
|+.-+.. .+.|++.+|...|.+.++.... -....+-.|..++...|++++|..+|..+.++++-.|-. ..+-.|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5554443 4455577777777777765321 112234456777777777777777777777665554433 45556666
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 423 VLGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 423 ~~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
...+.|+.++|..+|++.+.-.|+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 6677777777777777733334443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.39 E-value=1.2 Score=48.95 Aligned_cols=157 Identities=10% Similarity=0.073 Sum_probs=101.8
Q ss_pred HHHHHHcCCHHHHHHHHH-cCCCC--CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 044791 253 LARLCQEGKVKEAIELMD-KGVKA--DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMT 329 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~-~~~~p--d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~ 329 (623)
-....-.|++++++++.+ ..+.| ...-.+.++.-+-+.|..+.|+.+..+- . .-.....++|+++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNLD 335 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-HH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCHH
Confidence 344556788888888776 33332 2455788888888888888888775332 1 2345567888999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 044791 330 DARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFG 409 (623)
Q Consensus 330 ~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g 409 (623)
.|.++.++.. +...|..|.....+.|+++-|.+.|.+... |..|+--|.-.|+.+...++.+....+ |
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~ 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c
Confidence 9888765543 566899999999999999999998888653 556666777778887777777665543 2
Q ss_pred CCCCccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 410 ISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 410 ~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
-+|....++.-.|++++..+++.+
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 245556666677888888888777
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.35 E-value=4.7 Score=48.13 Aligned_cols=126 Identities=17% Similarity=0.120 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHhcCCHHHHHHHH
Q 044791 326 GSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA----CGSADAIEEAFIHF 401 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a----~~~~g~~e~A~~l~ 401 (623)
+++++|+.-+.++. ...|.-.++.--+.|.+.+|+.++ .|+...+..+..+ |...+.+++|.-+|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34455544444332 223333444444445555555444 3454444444333 34456666666666
Q ss_pred HHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHH
Q 044791 402 ESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEF--WEALRNYARIHGDIDLEDHAEELM 473 (623)
Q Consensus 402 ~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~t--y~~Li~a~~~~g~~~~A~~~~~~~ 473 (623)
+..-+ ..--+.+|..+|+|.+|+.+-.+ |....|... -..|+.-+...++.-+|-++....
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~q-l~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQ-LSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 54321 11235666667777777776666 443333322 245555666666655444444433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.7 Score=47.13 Aligned_cols=159 Identities=11% Similarity=0.082 Sum_probs=105.5
Q ss_pred HHH--HHHHHHHHHcC-----ChHHHHHHHHHHH-HcCCCCCH-HHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 044791 344 DSW--HLMINGYADNG-----LGDEGLQLFEQMR-KLGLQPNE-QTFLAVFSACGS---------ADAIEEAFIHFESMK 405 (623)
Q Consensus 344 ~ty--n~Li~~~~~~g-----~~eeA~~l~~eM~-~~g~~Pd~-~ty~~li~a~~~---------~g~~e~A~~l~~~m~ 405 (623)
..| ..++.|..... ..+.|+.+|.+.. ...+.|+- ..|..+..++.. ..+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567 66777765532 3578899999998 22356653 334333222211 233455556665555
Q ss_pred hhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCC
Q 044791 406 SEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADP 483 (623)
Q Consensus 406 ~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~ 483 (623)
.+.+ |......+..++.-.|+++.|..+|+++..+.||. .+|....-.+.-.|+.++|.+.++...++.|....
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~- 407 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK- 407 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH-
Confidence 4455 55556666666777888999999999988888875 45555555556689999999999998888877543
Q ss_pred CCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHH
Q 044791 484 KKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKAL 524 (623)
Q Consensus 484 ~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~ 524 (623)
......+|+.|+..+. |+|++++
T Consensus 408 ---------~~~~~~~~~~~~~~~~---------~~~~~~~ 430 (458)
T PRK11906 408 ---------AVVIKECVDMYVPNPL---------KNNIKLY 430 (458)
T ss_pred ---------HHHHHHHHHHHcCCch---------hhhHHHH
Confidence 3444566667777664 6888887
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.10 E-value=10 Score=43.30 Aligned_cols=101 Identities=14% Similarity=0.063 Sum_probs=76.0
Q ss_pred HHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 398 FIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 398 ~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
+.+.+.+..++|..-...+.+--+.-+...|...+|.++-.+ .. -||-..|-.-+.+++..++++ ++++...++.
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~-Fk-ipdKr~~wLk~~aLa~~~kwe---eLekfAkskk 742 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSD-FK-IPDKRLWWLKLTALADIKKWE---ELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHh-cC-CcchhhHHHHHHHHHhhhhHH---HHHHHHhccC
Confidence 445556665666655556666677788889999999999999 77 589999999999999999998 6666665554
Q ss_pred CCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHH
Q 044791 478 PSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALN 525 (623)
Q Consensus 478 ~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~ 525 (623)
+ ..-|.-++.+|.+.|.. +||.+++-
T Consensus 743 s--------------PIGy~PFVe~c~~~~n~--------~EA~KYip 768 (829)
T KOG2280|consen 743 S--------------PIGYLPFVEACLKQGNK--------DEAKKYIP 768 (829)
T ss_pred C--------------CCCchhHHHHHHhcccH--------HHHhhhhh
Confidence 2 22456677888888876 68888873
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.08 E-value=2.8 Score=42.06 Aligned_cols=238 Identities=18% Similarity=0.223 Sum_probs=150.3
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc-------CCCC--
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK-------GVKA-- 275 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-------~~~p-- 275 (623)
...+.++|+.-|+.+..... . .++......--+|..+.+.|++++.++.|+. .+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEg--E-------------KgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNy 103 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEG--E-------------KGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNY 103 (440)
T ss_pred cccCHHHHHHHHHHHHhccc--c-------------cchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccc
Confidence 67799999999998844221 1 1222334445788999999999999887753 3333
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhhcC---------
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQS-TIRGDL----VLNNKVIEMYGKCGSMTDARRVFDHMADR--------- 341 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-g~~pd~----~~y~~Li~~y~k~g~~~~A~~lf~~m~~~--------- 341 (623)
+..+.|++++..+...+.+.-.++|+.-++. .-..+. .|-..|...|...|++.+-.+++.++...
T Consensus 104 SEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD 183 (440)
T KOG1464|consen 104 SEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD 183 (440)
T ss_pred cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh
Confidence 4467889999888888877777776654332 001111 23456888888888888888888877531
Q ss_pred ---C---hHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHhhcC
Q 044791 342 ---S---MDSWHLMINGYADNGLGDEGLQLFEQMRKLG-LQPNEQTFLAVFSACG-----SADAIEEAFIHFESMKSEFG 409 (623)
Q Consensus 342 ---~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g-~~Pd~~ty~~li~a~~-----~~g~~e~A~~l~~~m~~~~g 409 (623)
+ ...|..=|..|....+-.+...+|+..+... --|..... -+|+-|+ +.|.+++|..-|-+..+.+.
T Consensus 184 ~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 184 QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 1 2278888888988888788888888776432 23444333 3445443 56888888754444443332
Q ss_pred C--CC---CccchhhHHHHHHhcCC----HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChh
Q 044791 410 I--SP---GTEHYLGLVGVLGKCGH----LFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDID 464 (623)
Q Consensus 410 ~--~p---~~~ty~~Li~~~~k~g~----~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~ 464 (623)
- .| ...-|..|.+++.+.|- -.+|.- ..-.|.+...+.|+.+|-. +++.
T Consensus 263 EsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP-----yKNdPEIlAMTnlv~aYQ~-NdI~ 320 (440)
T KOG1464|consen 263 ESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP-----YKNDPEILAMTNLVAAYQN-NDII 320 (440)
T ss_pred ccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC-----CCCCHHHHHHHHHHHHHhc-ccHH
Confidence 2 12 23346667777777652 222211 1134677889999999974 4554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.01 E-value=3.2 Score=43.01 Aligned_cols=112 Identities=12% Similarity=0.030 Sum_probs=59.0
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHH----HHHhcCCH
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVG----VLGKCGHL 430 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~----~~~k~g~~ 430 (623)
-.|++.+|...++++++. ..-|..++.-.=++|...|+.+.....++++.- ...+|...|.-+-. ++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 345555666666666554 233555555555566666666666666665552 23444433333222 22345666
Q ss_pred HHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHH
Q 044791 431 FEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHA 469 (623)
Q Consensus 431 e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~ 469 (623)
++|++.-++++.+.+ |...-.++...+-..|+..++.+.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eF 231 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEF 231 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHH
Confidence 666666666555444 445555555555566666644333
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.78 E-value=1.8 Score=38.78 Aligned_cols=87 Identities=14% Similarity=0.013 Sum_probs=55.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----ChH---HHHHHHHHHHHcCC
Q 044791 286 LCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR----SMD---SWHLMINGYADNGL 358 (623)
Q Consensus 286 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~----~~~---tyn~Li~~~~~~g~ 358 (623)
+++..|+++.|++.|.+.+.. .+-....||+-..+|.-.|+.++|+.=+++..+. +-. +|---...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 556777777777777777664 2335677777777777777777777777666541 111 34334445666677
Q ss_pred hHHHHHHHHHHHHcC
Q 044791 359 GDEGLQLFEQMRKLG 373 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g 373 (623)
.|.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766655
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.72 E-value=9.1 Score=39.16 Aligned_cols=152 Identities=13% Similarity=0.039 Sum_probs=97.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH-HHH---HHHHHHHHcCCh
Q 044791 284 FELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD-SWH---LMINGYADNGLG 359 (623)
Q Consensus 284 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~-tyn---~Li~~~~~~g~~ 359 (623)
.......|++.+|..+|+......-. +...--.|+.+|...|++++|..+++.+...... -|. .-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 44567789999999999988875322 3556667899999999999999999998743222 222 234555555555
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHH
Q 044791 360 DEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIE 438 (623)
Q Consensus 360 eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~ 438 (623)
.+...+-.+.-+ .| |...=..+...+...|+.++|.+.+-.+.++..-.-|...-..||+.+.-.|..+.+...++
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 555555555443 45 55556677778888899999988776666541222244455566666655554444433333
Q ss_pred h
Q 044791 439 Q 439 (623)
Q Consensus 439 ~ 439 (623)
+
T Consensus 297 R 297 (304)
T COG3118 297 R 297 (304)
T ss_pred H
Confidence 3
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.70 E-value=2.6 Score=43.67 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhhcCC--CCCccchhhHHHHHHhcCC-
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS--AD----AIEEAFIHFESMKSEFGI--SPGTEHYLGLVGVLGKCGH- 429 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~--~g----~~e~A~~l~~~m~~~~g~--~p~~~ty~~Li~~~~k~g~- 429 (623)
+++.+.+++.|++.|+.-+..+|.+....... .. ...+|..+|+.|++.+.+ .++...+.+|+.+ ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667889999999999998888775444333 22 356888999999987554 3355566666544 3333
Q ss_pred ---HHHHHHHHHhh--CCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCC
Q 044791 430 ---LFEAQQFIEQK--LPFE-PTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKAD 482 (623)
Q Consensus 430 ---~e~A~~lf~~~--m~~~-Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~ 482 (623)
.++++.+|+.. .++. -|..-+-+-|-++.....-+.+.++.+....+...++.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k 214 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK 214 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc
Confidence 45566666661 1333 34444444444444444444455666666666666654
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.69 E-value=15 Score=42.90 Aligned_cols=225 Identities=12% Similarity=0.045 Sum_probs=129.3
Q ss_pred ccccccCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHH-HHHcCCHHHHHHHHHc-------
Q 044791 200 QWNNQQNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLAR-LCQEGKVKEAIELMDK------- 271 (623)
Q Consensus 200 ~w~~~~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~l~~~------- 271 (623)
.|....+.++++|..+..+...+...|+..... .....+.+|=.. ....|++++|+++.+.
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~-----------~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~ 490 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQG-----------DLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE 490 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchh-----------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc
Confidence 788888999999999999987655544322211 112333344222 2357899999988753
Q ss_pred -CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHHcCC--HHHHHHHHHHhhc---
Q 044791 272 -GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVI-----EMYGKCGS--MTDARRVFDHMAD--- 340 (623)
Q Consensus 272 -~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li-----~~y~k~g~--~~~A~~lf~~m~~--- 340 (623)
......+.+.++..+..-.|+++.|..+..+..+..-.-|++.+..++ ..+-..|. ..+.+..|.....
T Consensus 491 ~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l 570 (894)
T COG2909 491 AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHL 570 (894)
T ss_pred ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 344566788888899999999999999988776642233433333222 22345563 3334444444332
Q ss_pred --CCh-----HHHHHHHHHHHHcCChHHHHHHHHHHH----HcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 341 --RSM-----DSWHLMINGYADNGLGDEGLQLFEQMR----KLGLQPNEQ--TFLAVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 341 --~~~-----~tyn~Li~~~~~~g~~eeA~~l~~eM~----~~g~~Pd~~--ty~~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
... -++..++.++.+ ++.+..-...-. .....+-.. .+..|+......|++++|...++++..-
T Consensus 571 ~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 571 EQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred hhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 122 245555555555 333333222222 222222222 2236677778899999999999988853
Q ss_pred cCCCCCc-cchhh---HHHH--HHhcCCHHHHHHHHHh
Q 044791 408 FGISPGT-EHYLG---LVGV--LGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 408 ~g~~p~~-~ty~~---Li~~--~~k~g~~e~A~~lf~~ 439 (623)
....+. +-|.+ ++.. ....|+.++|.....+
T Consensus 648 -~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 648 -LLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred -hcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 222221 11222 2222 2346888887777766
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.54 E-value=7.5 Score=35.04 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGI 410 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~ 410 (623)
-.+..++.+...|+-|.-.+++.++.+ .-.++......+..||.+.|+..+|-+++.+..++ |+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 345566777888888888888888764 23567777777888888888888888888887765 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.21 E-value=1.7 Score=51.64 Aligned_cols=105 Identities=10% Similarity=0.064 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-ChH--HHHHHHHHHHHc
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR-SMD--SWHLMINGYADN 356 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-~~~--tyn~Li~~~~~~ 356 (623)
|.+-.+-|...+.+++|--+|+..-+ ..--+.+|..+|+|.+|+.+-..|... |.. +--.|+.-+...
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHc
Confidence 33333444445555555555543311 122345556666666666665555432 221 224455556666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044791 357 GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHF 401 (623)
Q Consensus 357 g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~ 401 (623)
+++-+|-+++.+-... +.-.+..||+...+++|+++-
T Consensus 1013 ~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVA 1049 (1265)
T ss_pred ccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHH
Confidence 6666666655554432 112233444445555555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.16 E-value=1.4 Score=46.64 Aligned_cols=87 Identities=11% Similarity=0.030 Sum_probs=46.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcC------------------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMADR------------------SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQ 379 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~~------------------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ 379 (623)
-.+.|.+.|++..|...|++...- -+.+++.|..+|.+.+++.+|+..-++.++.+ ..|+-
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 345667777777777777664320 11245555555555555555555555555442 12333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 380 TFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 380 ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
..---..+|...|+++.|+..|..+.
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 33344445555555555555555555
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.01 E-value=27 Score=40.11 Aligned_cols=19 Identities=11% Similarity=-0.029 Sum_probs=10.2
Q ss_pred CCHHHHHHHHHHHHHcCCh
Q 044791 445 PTAEFWEALRNYARIHGDI 463 (623)
Q Consensus 445 Pd~~ty~~Li~a~~~~g~~ 463 (623)
.|..+|.-=|+.+|+..|.
T Consensus 836 rNa~afgF~is~L~kL~dT 854 (1102)
T KOG1924|consen 836 RNAQAFGFNISFLCKLRDT 854 (1102)
T ss_pred ccchhhccchHHHHhhccc
Confidence 4455555555555555543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.90 E-value=1.4 Score=44.29 Aligned_cols=94 Identities=15% Similarity=0.275 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcC------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCC-HHHHHHHH
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMADR------SMDSWHLMINGYADNGLGDEGLQLFEQMRKLG-LQPN-EQTFLAVF 385 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~~------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g-~~Pd-~~ty~~li 385 (623)
.|+.-+.. .+.|++.+|...|....+. ....+--|..++...|++++|..+|..+.+.- -.|- ..++.-|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 56665544 4556688888888777653 12267778888888888888888888877542 1222 25666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhc
Q 044791 386 SACGSADAIEEAFIHFESMKSEF 408 (623)
Q Consensus 386 ~a~~~~g~~e~A~~l~~~m~~~~ 408 (623)
.+..+.|+.++|..+|+++.+++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 77788888888888888888664
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.4 Score=41.21 Aligned_cols=89 Identities=7% Similarity=-0.061 Sum_probs=61.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh---cCChHHHHHHHHHHHHcCC
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA---DRSMDSWHLMINGYADNGL 358 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~---~~~~~tyn~Li~~~~~~g~ 358 (623)
....-+...|++++|..+|.-+.-.+.. +..-+..|..++-..+++++|+.+|...- ..|...+--+..+|...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 3444556678888888888777665433 45556677777777788888888877543 3455566667777888888
Q ss_pred hHHHHHHHHHHHH
Q 044791 359 GDEGLQLFEQMRK 371 (623)
Q Consensus 359 ~eeA~~l~~eM~~ 371 (623)
.++|...|+...+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 8888887777766
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=91.72 E-value=13 Score=40.32 Aligned_cols=121 Identities=18% Similarity=0.169 Sum_probs=69.1
Q ss_pred HHHcCC-hHHHHHHHHHHHHcCCCC-CHHHHHHHHH----HHHh---cCCHHHHHHHHHHHHhhcCCCCCc----cchhh
Q 044791 353 YADNGL-GDEGLQLFEQMRKLGLQP-NEQTFLAVFS----ACGS---ADAIEEAFIHFESMKSEFGISPGT----EHYLG 419 (623)
Q Consensus 353 ~~~~g~-~eeA~~l~~eM~~~g~~P-d~~ty~~li~----a~~~---~g~~e~A~~l~~~m~~~~g~~p~~----~ty~~ 419 (623)
+.+.|. -++|+++++..++- .+ |..+-|.+.. +|.. ...+.+-..+-+-+. +.|+.|-. ..-|.
T Consensus 389 lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~-e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFIT-EVGLTPITISEEEIANF 465 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-hcCCCcccccHHHHHHH
Confidence 555665 78888888888763 33 2222222221 2222 122333333333333 34777633 34555
Q ss_pred HHHH--HHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 420 LVGV--LGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 420 Li~~--~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
|.+| +.-.|++.++.-.-.=..++.|...+|..+.-++....+++ ++++.+.++.++
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~---eA~~~l~~LP~n 524 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQ---EAWEYLQKLPPN 524 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHH---HHHHHHHhCCCc
Confidence 5554 44578888887543332347788888888888888888888 555555555553
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=91.70 E-value=2.8 Score=45.12 Aligned_cols=132 Identities=11% Similarity=0.003 Sum_probs=89.0
Q ss_pred HHHHcCCHHHHHHHHHc---CCCCC------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HH
Q 044791 255 RLCQEGKVKEAIELMDK---GVKAD------ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEM--YG 323 (623)
Q Consensus 255 ~~~~~g~~~~A~~l~~~---~~~pd------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~--y~ 323 (623)
.+-+.+++.+|.++|.+ .+.-+ .+.-+-+|++|.. .+++.....+....+. .|. ..|-.|..+ +.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~~-s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FGK-SAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cCC-chHHHHHHHHHHH
Confidence 34578999999999964 22222 2345567777764 4577777777776664 221 223333332 34
Q ss_pred HcCCHHHHHHHHHHhhcC------------------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC----CCCHHHH
Q 044791 324 KCGSMTDARRVFDHMADR------------------SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGL----QPNEQTF 381 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~~------------------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~----~Pd~~ty 381 (623)
+.+.+++|+..|..-.+. |...=++.+..+...|++.|+..++++|...=+ .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778999999988765432 222456678889999999999999999986543 3688899
Q ss_pred HHHHHHHHh
Q 044791 382 LAVFSACGS 390 (623)
Q Consensus 382 ~~li~a~~~ 390 (623)
+.++-.+++
T Consensus 171 d~~vlmlsr 179 (549)
T PF07079_consen 171 DRAVLMLSR 179 (549)
T ss_pred HHHHHHHhH
Confidence 988777765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.62 E-value=2.8 Score=44.50 Aligned_cols=122 Identities=13% Similarity=0.043 Sum_probs=88.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHc-----CCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHH
Q 044791 284 FELCGNPKWYENAKKVHDYFLQS-----TIR---------GDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSW 346 (623)
Q Consensus 284 l~~~~~~g~~~~A~~l~~~m~~~-----g~~---------pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~ty 346 (623)
.+.+.+.|++..|..-|++.++. +.. .-..++.+|.-+|.|.+++.+|+...++..+ .|+...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 44667778888888777775542 111 1236788899999999999999999987765 466666
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCC-HHHHHHHHHHHHhh
Q 044791 347 HLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS-ADA-IEEAFIHFESMKSE 407 (623)
Q Consensus 347 n~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~-~g~-~e~A~~l~~~m~~~ 407 (623)
---..+|...|+++.|...|+++.+. .|+..+-..=|..|.+ ..+ .+...++|..|...
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66788999999999999999999984 7776666555555543 333 34446888888754
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.23 E-value=2 Score=40.99 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCh------HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMADRSM------DSWHLMINGYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~------~tyn~Li~~~~~~g~~eeA~~l~~eM~ 370 (623)
..+..+...|++.|+.++|++.|.++.+..+ ..+-.+|......+++..+.....+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4566677777777777777777777665422 255666666666677776666666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13388 DUF4106: Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.44 Score=47.60 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=14.3
Q ss_pred ccCCCCCCCCCCCCCCCCCCC
Q 044791 57 EYNTPPPQPPQSPLSDSRAFP 77 (623)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~ 77 (623)
.|=.|.|+--..-|.=|..|-
T Consensus 170 TYIPPNPPrEAPAPGLPKTFT 190 (422)
T PF13388_consen 170 TYIPPNPPREAPAPGLPKTFT 190 (422)
T ss_pred cccCCCCcccccCCCCcchhh
Confidence 566777776666677777773
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.14 E-value=9.4 Score=39.65 Aligned_cols=131 Identities=11% Similarity=0.003 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH---HHHH
Q 044791 275 ADASCFYTLFELCGNPKWYENAKKVHDYFLQS---TIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD---SWHL 348 (623)
Q Consensus 275 pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~---g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~---tyn~ 348 (623)
-|..++.-.-++|.-.|+.+.-...+++++-. +++-..++...+.-++..+|-+++|++.-++..+-|.. +-.+
T Consensus 135 tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha 214 (491)
T KOG2610|consen 135 TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHA 214 (491)
T ss_pred hhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHH
Confidence 34444555555666666666666666655432 22212233333444445667777777766666554333 3444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKLGLQP---NEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~g~~P---d~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
+...+-.+|++.++.++..+-...--.- -..-|-...-.+.+.+.++.|+++|+.-+
T Consensus 215 ~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 215 KAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 5555566677777766655533210000 01111122223344566777777776433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.09 E-value=12 Score=43.39 Aligned_cols=176 Identities=14% Similarity=0.101 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHc-CCCCCH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDK-GVKADA--SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~-~~~pd~--~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
..-+-|..+++...++.|+.+-+. +..+|. .....-.+-|.+.|++++|...|-+.+.. +.|. -+|.-|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 344667778888888888888764 333332 12333444566789999998888665443 2322 24555666
Q ss_pred cCCHHHHHHHHHHhhcCChH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044791 325 CGSMTDARRVFDHMADRSMD---SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHF 401 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~~~~~---tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~ 401 (623)
..++..-..+++.+.+.+.. .-..||.+|.+.++.++-.++.+.-. .|.- ..-.-..+..|.+.+-+++|..+-
T Consensus 410 aq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHH
Confidence 66666666777777665443 56778999999999888777665544 3322 112345667777778888887665
Q ss_pred HHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 402 ESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 402 ~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
..... +. ..|--.+-..+++++|++++.. |+
T Consensus 487 ~k~~~------he---~vl~ille~~~ny~eAl~yi~s-lp 517 (933)
T KOG2114|consen 487 TKFKK------HE---WVLDILLEDLHNYEEALRYISS-LP 517 (933)
T ss_pred HHhcc------CH---HHHHHHHHHhcCHHHHHHHHhc-CC
Confidence 44331 11 1233345567889999999888 65
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.95 E-value=3.4 Score=37.75 Aligned_cols=50 Identities=14% Similarity=0.261 Sum_probs=27.1
Q ss_pred HHcCCHHHHHHHHHHhhcC------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 323 GKCGSMTDARRVFDHMADR------SMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 323 ~k~g~~~~A~~lf~~m~~~------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
.+.|++++|++.|+.+..+ ..-+--.|+.+|.+.|++++|...+++.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445666666666655542 1114444555666666666666666665554
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.88 E-value=34 Score=40.12 Aligned_cols=179 Identities=16% Similarity=0.096 Sum_probs=103.5
Q ss_pred HHcCCHHHHHHHHHc--------CCCCCH---HHHHHHHHH-HhCCCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 044791 257 CQEGKVKEAIELMDK--------GVKADA---SCFYTLFEL-CGNPKWYENAKKVHDYFLQS----TIRGDLVLNNKVIE 320 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~--------~~~pd~---~ty~~Ll~~-~~~~g~~~~A~~l~~~m~~~----g~~pd~~~y~~Li~ 320 (623)
....++++|..+..+ +..+.. ..|+.|-.. ....|++++|+++-+..... -....+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 467889999888742 112222 345554443 24468899999998877654 22345778888888
Q ss_pred HHHHcCCHHHHHHHHHHhhcC----ChH---HHHHHHHH--HHHcCC--hHHHHHHHHHHHHc-----CC-CCCHHHHHH
Q 044791 321 MYGKCGSMTDARRVFDHMADR----SMD---SWHLMING--YADNGL--GDEGLQLFEQMRKL-----GL-QPNEQTFLA 383 (623)
Q Consensus 321 ~y~k~g~~~~A~~lf~~m~~~----~~~---tyn~Li~~--~~~~g~--~eeA~~l~~eM~~~-----g~-~Pd~~ty~~ 383 (623)
+..-.|++++|..+.....+. ++. .|..++.+ +...|+ +++.+..|....+. .+ .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 998999999999988766543 554 34444333 555663 34444444444322 11 122345555
Q ss_pred HHHHHHhcCCHHHHHH----HHHHHHhhcCCCCCcc--chhhHHHHHHhcCCHHHHHHHHHh
Q 044791 384 VFSACGSADAIEEAFI----HFESMKSEFGISPGTE--HYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 384 li~a~~~~g~~e~A~~----l~~~m~~~~g~~p~~~--ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
++.++.+ ++.+.. -++.-. .+...+-.. .+..|+..+...|+.++|...+++
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~-~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~ 643 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGS-VYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDE 643 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhh-hcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5656555 333332 121111 111122111 223567777889999999999888
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.87 E-value=2 Score=39.19 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=26.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQ--PNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~--Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
..+.|++++|.+.|+.+...-.. -...+-..|+.+|.+.|++++|...+++.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555555555555543111 1223344455555555555555555555553
|
|
| >PRK10263 DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.82 Score=55.42 Aligned_cols=47 Identities=9% Similarity=0.276 Sum_probs=35.6
Q ss_pred HhHHHHHHhcccCCCCChhHHHh-hHhhhcchhHHHHHHHHHhCCceeee
Q 044791 556 SERLAIAYGLISTPARTPLRIIK-NLRVCGDCHNAIKIMSRIVGRELIVR 604 (623)
Q Consensus 556 ~g~l~~A~~ll~~m~~~~~~i~~-~l~~~g~~~~a~~l~~~~~~~~~~~r 604 (623)
...+++|.+++.+..+..+..+. -|+.. +..|.++++.|.+++||-.
T Consensus 1292 D~l~~~a~~~v~~~~~~S~S~lQR~~~iG--ynRAariid~lE~~Giv~p 1339 (1355)
T PRK10263 1292 DPLFDQAVQFVTEKRKASISGVQRQFRIG--YNRAARIIEQMEAQGIVSE 1339 (1355)
T ss_pred cHHHHHHHHHHHhcCccCHHHHHHHhhcC--hHHHHHHHHHHHHCCcCCC
Confidence 35678899998888776665554 44432 6789999999999999875
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.26 E-value=1.8 Score=38.77 Aligned_cols=89 Identities=19% Similarity=0.146 Sum_probs=50.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC--CHH---HHHHHHHHHHHc
Q 044791 387 ACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP--TAE---FWEALRNYARIH 460 (623)
Q Consensus 387 a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P--d~~---ty~~Li~a~~~~ 460 (623)
++++.|+++.|++.|...+ .+.| ....||.-..+|.-.|+.++|++=+++++++.- .-. .|.--...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4556677777777776665 3333 455677777777777777777666666443111 111 122222245566
Q ss_pred CChhHHHHHHHHHHhcCC
Q 044791 461 GDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 461 g~~~~A~~~~~~~~~m~~ 478 (623)
|+.|.|..-++...+++.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 777777666666666543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.74 E-value=14 Score=37.83 Aligned_cols=163 Identities=14% Similarity=0.072 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHH------cC-----CHHHHHHHHHHhhcCC--hHHHHHHHHHHHHcCChHHHHHHHHHHH-------
Q 044791 311 DLVLNNKVIEMYGK------CG-----SMTDARRVFDHMADRS--MDSWHLMINGYADNGLGDEGLQLFEQMR------- 370 (623)
Q Consensus 311 d~~~y~~Li~~y~k------~g-----~~~~A~~lf~~m~~~~--~~tyn~Li~~~~~~g~~eeA~~l~~eM~------- 370 (623)
...+|.+.+.++.. .| .-.+|+++|--+.+.. .++-+-+|.++....+..+|...|...+
T Consensus 121 ~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaL 200 (361)
T COG3947 121 AEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKAL 200 (361)
T ss_pred chhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHh
Confidence 34556666666652 11 1346777777665432 4455666777777777777766554432
Q ss_pred H-------------------cCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhcCCCCCc-------------cch
Q 044791 371 K-------------------LGLQPNEQTFLAVFSACGSA-DAIEEAFIHFESMKSEFGISPGT-------------EHY 417 (623)
Q Consensus 371 ~-------------------~g~~Pd~~ty~~li~a~~~~-g~~e~A~~l~~~m~~~~g~~p~~-------------~ty 417 (623)
. .+++-|+.-|-..+...-.. ..++++.+++...+- +.-++. .+|
T Consensus 201 s~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykg--dyl~e~~y~Waedererle~ly 278 (361)
T COG3947 201 SRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKG--DYLPEADYPWAEDERERLEQLY 278 (361)
T ss_pred chhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcC--CcCCccccccccchHHHHHHHH
Confidence 1 23455777777777665433 457777777766642 222221 133
Q ss_pred hh----HHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 418 LG----LVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 418 ~~----Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
.. ....|..+|.+.+|.++-++++.+.| +...|..|+..|+..||--.|.+-++.+.+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33 34568889999999999999776666 778888999999999997767666666544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.62 E-value=2.6 Score=43.02 Aligned_cols=75 Identities=16% Similarity=0.292 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRK-----LGLQPNEQTFLAV 384 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~-----~g~~Pd~~ty~~l 384 (623)
.++..++..+..+|+++.+.+.++++... +...|..||.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34555666666667777777666666543 333677777777777777777766666553 4666655555444
Q ss_pred HHH
Q 044791 385 FSA 387 (623)
Q Consensus 385 i~a 387 (623)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=89.40 E-value=34 Score=36.81 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=104.7
Q ss_pred cCCHHHHHHHHHHhhcC----ChHHHHHHHHH-HHHcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHH
Q 044791 325 CGSMTDARRVFDHMADR----SMDSWHLMING-YADNGLGDEGLQLFEQMRKLGLQPN----EQTFLAVFSACGSADAIE 395 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~~----~~~tyn~Li~~-~~~~g~~eeA~~l~~eM~~~g~~Pd----~~ty~~li~a~~~~g~~e 395 (623)
.|+.++|.+.|..+... .+..|-.|+.+ ..-..+..+|+++|+...-. .|- ....---|......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 58999999999888643 34467777776 45556789999999987643 343 233444455667889999
Q ss_pred HHHHHHHHHHhhcCCCCCccchh----hHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 044791 396 EAFIHFESMKSEFGISPGTEHYL----GLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEE 471 (623)
Q Consensus 396 ~A~~l~~~m~~~~g~~p~~~ty~----~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~ 471 (623)
+++.+-.....+|...|=..-|- ..+..+....+.+.-.+++.. |.-.--...|-.+...-...|+.+.|..+.+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99988888887776666333222 233333333445566666666 6523334688888888889999999999999
Q ss_pred HHHhcCCCC
Q 044791 472 LMVDLDPSK 480 (623)
Q Consensus 472 ~~~~m~~~~ 480 (623)
+...+...+
T Consensus 282 ~A~~L~~~~ 290 (421)
T PRK12798 282 RALKLADPD 290 (421)
T ss_pred HHHHhccCC
Confidence 988887443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.27 E-value=25 Score=35.11 Aligned_cols=213 Identities=15% Similarity=0.062 Sum_probs=128.7
Q ss_pred HHHHHHHHH---cCCCCCH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044791 262 VKEAIELMD---KGVKADA----SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRV 334 (623)
Q Consensus 262 ~~~A~~l~~---~~~~pd~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~l 334 (623)
..+|.++.. ...+||- ..|.--..+|....++++|...+.+..+. .+-+...| .-...++.|.-+
T Consensus 9 i~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamL 80 (308)
T KOG1585|consen 9 ISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAML 80 (308)
T ss_pred HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHH
Confidence 344444442 1345654 34666677888889999999888776542 22222222 223445667777
Q ss_pred HHHhhcCChH--HHHHHHHHHHHcCChHHHHHHHHHHHH--cCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 044791 335 FDHMADRSMD--SWHLMINGYADNGLGDEGLQLFEQMRK--LGLQPNEQ--TFLAVFSACGSADAIEEAFIHFESMKSEF 408 (623)
Q Consensus 335 f~~m~~~~~~--tyn~Li~~~~~~g~~eeA~~l~~eM~~--~g~~Pd~~--ty~~li~a~~~~g~~e~A~~l~~~m~~~~ 408 (623)
.++|.+-+.+ .|+-.+..|...|..+-|-..+++.-+ ..+.|+.. .|.--+...-..++...|.++
T Consensus 81 ake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el-------- 152 (308)
T KOG1585|consen 81 AKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL-------- 152 (308)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH--------
Confidence 7777665443 677788899999999988887777542 23555532 333333333333444333333
Q ss_pred CCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC-------CCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 409 GISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-------FEPTA-EFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 409 g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-------~~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
|..+-.+|++..++++|-..|.+ .. -.++. ..|-..|-.|.-..|+..|++.++.-..+....
T Consensus 153 --------~gk~sr~lVrl~kf~Eaa~a~lK-e~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~ 223 (308)
T KOG1585|consen 153 --------YGKCSRVLVRLEKFTEAATAFLK-EGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL 223 (308)
T ss_pred --------HHHhhhHhhhhHHhhHHHHHHHH-hhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc
Confidence 34455668888888888777766 22 12232 345555666666678887888877765554443
Q ss_pred CCCCCCCCCCCchhhHHHHhhhcCccc
Q 044791 481 ADPKKIPTPPPKKRTAISILDGKSRLV 507 (623)
Q Consensus 481 ~~~~~~~~~~p~~~t~~~li~~~~~~~ 507 (623)
.+ -+..+...||.+|-...
T Consensus 224 ~s--------ed~r~lenLL~ayd~gD 242 (308)
T KOG1585|consen 224 KS--------EDSRSLENLLTAYDEGD 242 (308)
T ss_pred Ch--------HHHHHHHHHHHHhccCC
Confidence 33 55777888888875543
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=89.00 E-value=27 Score=35.48 Aligned_cols=139 Identities=20% Similarity=0.162 Sum_probs=73.5
Q ss_pred HHHHHcCCHHHHHHHH-------H-cCCCCCHHHHHHHHHHHhCCCCHH-HHHHHHHHHHH---cC--CCCCHHHHHHHH
Q 044791 254 ARLCQEGKVKEAIELM-------D-KGVKADASCFYTLFELCGNPKWYE-NAKKVHDYFLQ---ST--IRGDLVLNNKVI 319 (623)
Q Consensus 254 ~~~~~~g~~~~A~~l~-------~-~~~~pd~~ty~~Ll~~~~~~g~~~-~A~~l~~~m~~---~g--~~pd~~~y~~Li 319 (623)
..+.+.|+...|-++- + .++..|......|+..+...+.-+ +-.++.+++++ .| -.-|......+.
T Consensus 18 ~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a 97 (260)
T PF04190_consen 18 LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLA 97 (260)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 3466677776665542 2 366677766666666665543222 23344444433 22 223678888999
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044791 320 EMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 320 ~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~ 399 (623)
..|.+.|++.+|+..|-.-.......+-.++......|...|+.- ..-.+++ -|...+++..|..
T Consensus 98 ~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dl--------------fi~RaVL-~yL~l~n~~~A~~ 162 (260)
T PF04190_consen 98 EKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADL--------------FIARAVL-QYLCLGNLRDANE 162 (260)
T ss_dssp HHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHH--------------HHHHHHH-HHHHTTBHHHHHH
T ss_pred HHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhH--------------HHHHHHH-HHHHhcCHHHHHH
Confidence 999999999999887744333333334334544454555444422 2222222 3555688888888
Q ss_pred HHHHHHhh
Q 044791 400 HFESMKSE 407 (623)
Q Consensus 400 l~~~m~~~ 407 (623)
+++...+.
T Consensus 163 ~~~~f~~~ 170 (260)
T PF04190_consen 163 LFDTFTSK 170 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777654
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.95 E-value=28 Score=35.21 Aligned_cols=191 Identities=11% Similarity=0.012 Sum_probs=104.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHhhc-------C--ChHHHHHHHHHHHHcCC
Q 044791 291 KWYENAKKVHDYFLQSTIRGDL---VLNNKVIEMYGKCGSMTDARRVFDHMAD-------R--SMDSWHLMINGYADNGL 358 (623)
Q Consensus 291 g~~~~A~~l~~~m~~~g~~pd~---~~y~~Li~~y~k~g~~~~A~~lf~~m~~-------~--~~~tyn~Li~~~~~~g~ 358 (623)
...++|+.-|.+.++..-.... ....-+|..+.+.|++++.++.|.+|.. + ...+.|++++.......
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 3566677777666653212122 2333456667777777777777776642 1 22256666665554444
Q ss_pred hHHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC----------CccchhhHHHH
Q 044791 359 GDEGLQLFEQMRK----L-GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP----------GTEHYLGLVGV 423 (623)
Q Consensus 359 ~eeA~~l~~eM~~----~-g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p----------~~~ty~~Li~~ 423 (623)
.+-.-++|+.-++ . +-+.--.|-+.|...|...|.+.+..+++.++...+...- -...|..-|.+
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 3333333332211 1 0111112344566666677777777777776664321111 13567777888
Q ss_pred HHhcCCHHHHHHHHHhhCC---CCCCHHHHHHHHH----HHHHcCChhHH-HHHHHHHHhcCCCCC
Q 044791 424 LGKCGHLFEAQQFIEQKLP---FEPTAEFWEALRN----YARIHGDIDLE-DHAEELMVDLDPSKA 481 (623)
Q Consensus 424 ~~k~g~~e~A~~lf~~~m~---~~Pd~~ty~~Li~----a~~~~g~~~~A-~~~~~~~~~m~~~~~ 481 (623)
|....+-.+...+|+.++. .-|.......+-. ...+.|.+++| -..++.+...+..|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs 266 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS 266 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCC
Confidence 8888888888888888554 2344444433322 23456777766 356666666666654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.74 E-value=5.5 Score=37.95 Aligned_cols=95 Identities=14% Similarity=0.037 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchh--hH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE--QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYL--GL 420 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~--~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~--~L 420 (623)
.|..+..-|++.|+.++|++.|.++.+....+.. ..+..+|..+...+++..+...+.+...-....-|...-| ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 7889999999999999999999999987655543 4567888899999999999988877764311111222222 12
Q ss_pred HHH--HHhcCCHHHHHHHHHh
Q 044791 421 VGV--LGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 421 i~~--~~k~g~~e~A~~lf~~ 439 (623)
..+ +...|++.+|-++|-.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHc
Confidence 222 3347899999999988
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.72 E-value=0.9 Score=30.79 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=14.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~ 370 (623)
|+.|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555566666666666666665533
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=88.52 E-value=15 Score=39.66 Aligned_cols=207 Identities=11% Similarity=0.005 Sum_probs=115.1
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCC
Q 044791 252 DLARLCQEGKVKEAIELMDKGVKADASC--FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV--LNNKVIEMYGKCGS 327 (623)
Q Consensus 252 li~~~~~~g~~~~A~~l~~~~~~pd~~t--y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~y~~Li~~y~k~g~ 327 (623)
-+...++.|..+.+..+++.|..++... ..+.+..++..|+.+- .+.+++.|..++.. ...+.+...++.|+
T Consensus 5 ~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 5 ALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 3555677899999988889888876533 3345555566777653 44455666655432 12345666778899
Q ss_pred HHHHHHHHHHhhcCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHH
Q 044791 328 MTDARRVFDHMADRSM----DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQT--FLAVFSACGSADAIEEAFIHF 401 (623)
Q Consensus 328 ~~~A~~lf~~m~~~~~----~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~t--y~~li~a~~~~g~~e~A~~l~ 401 (623)
.+.+..+++.-...+. ..++ .+...+..|.. ++++.+.+.|..++... -.+.+...+..|+.+-+..++
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9988888765432111 1122 33334455665 45555566777765432 123455556778876655554
Q ss_pred HHHHhhcCCCCCcc--chhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 402 ESMKSEFGISPGTE--HYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEF---WEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 402 ~~m~~~~g~~p~~~--ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~t---y~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
+ . |..++.. .-.+.+...+..|..+-+.-+++. +..++... ..+++...+..|+.+ +.+.+.+.
T Consensus 156 ~----~-g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~--ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ 224 (413)
T PHA02875 156 D----H-KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS--GANIDYFGKNGCVAALCYAIENNKID----IVRLFIKR 224 (413)
T ss_pred h----c-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHC
Confidence 3 2 4444321 122344555667887776666654 32333211 124444445667764 55555554
Q ss_pred CC
Q 044791 477 DP 478 (623)
Q Consensus 477 ~~ 478 (623)
+.
T Consensus 225 ga 226 (413)
T PHA02875 225 GA 226 (413)
T ss_pred Cc
Confidence 33
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.19 E-value=31 Score=41.23 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=24.6
Q ss_pred HcC-CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044791 270 DKG-VKADASCFYTLFELCGNPKWYENAKKVHDYFL 304 (623)
Q Consensus 270 ~~~-~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~ 304 (623)
+++ +.|....+-.-|..+.+.+++++|..+...|.
T Consensus 989 ~~~~LSp~~~~~L~~la~~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 989 RDGTLSPPITDGLHQLAQSIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred hcCCcChHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 344 66666666666666777788888888887776
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.14 E-value=5.6 Score=37.51 Aligned_cols=116 Identities=13% Similarity=0.130 Sum_probs=50.8
Q ss_pred HHcCCHHHHHHHHHHhhcCChHHHHHHH-----HHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHH--HHHHhcCCH
Q 044791 323 GKCGSMTDARRVFDHMADRSMDSWHLMI-----NGYADNGLGDEGLQLFEQMRKLGLQPNEQ-TFLAVF--SACGSADAI 394 (623)
Q Consensus 323 ~k~g~~~~A~~lf~~m~~~~~~tyn~Li-----~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~-ty~~li--~a~~~~g~~ 394 (623)
+..+..++|+.-|..+.+.+.-.|-.|. ......|+..+|...|++.-...-.|-.. -.--|= -.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3445555555555555554444333332 12445555566666666555433233221 011111 113344555
Q ss_pred HHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 395 EEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 395 e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
+.....++-+... +-..-...-.+|.-+-.+.|++.+|..+|..
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~q 192 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQ 192 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHH
Confidence 5554444443321 1111222223444444556666666666666
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.01 E-value=23 Score=36.39 Aligned_cols=143 Identities=13% Similarity=0.068 Sum_probs=93.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAI 394 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~ 394 (623)
-.......|++.+|..+|+.... .+...--.|+.+|...|+.++|..++..+-..--.........-|..+.+....
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34456778999999999998764 344567778899999999999999999876432222223322334444444444
Q ss_pred HHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHHcCChh
Q 044791 395 EEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPF---EPTAEFWEALRNYARIHGDID 464 (623)
Q Consensus 395 e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~---~Pd~~ty~~Li~a~~~~g~~~ 464 (623)
.+...+-.+..+ .| |...--.|...|.-.|+.++|.+.+-..|.. .-|...-..|+..+...|..|
T Consensus 220 ~~~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 220 PEIQDLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 444444444432 35 5555567888899999999999887764541 123455566666666666444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.91 E-value=14 Score=34.37 Aligned_cols=108 Identities=16% Similarity=0.164 Sum_probs=56.4
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHhhcCChH-HHHHHHHHHHHcCChHHHH
Q 044791 286 LCGNPKWYENAKKVHDYFLQSTIRGDLVLNNK-VIEMYGKCGSMTDARRVFDHMADRSMD-SWHLMINGYADNGLGDEGL 363 (623)
Q Consensus 286 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~-Li~~y~k~g~~~~A~~lf~~m~~~~~~-tyn~Li~~~~~~g~~eeA~ 363 (623)
.-.+.++.+++..+++-|.- +.|....... -...+.+.|+|++|+++|+++.+.... .|-.-+.++|-...-|..+
T Consensus 19 ~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 33556678888888887776 4454322222 233456778888888888887765443 3333333333333334444
Q ss_pred HHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044791 364 QLF-EQMRKLGLQPNEQTFLAVFSACGSADAIEEAF 398 (623)
Q Consensus 364 ~l~-~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~ 398 (623)
..+ +++.+.+-.|+.. .|+..+....+...|.
T Consensus 97 r~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 97 RRYADEVLESGADPDAR---ALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHHHhcCCChHHH---HHHHHHHHhccccchh
Confidence 433 3355555444443 2334444444443333
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.76 E-value=8.6 Score=35.35 Aligned_cols=90 Identities=11% Similarity=0.071 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHhhcCChH-HHHHHHHHHHHcCChHHHHHHH
Q 044791 289 NPKWYENAKKVHDYFLQSTIRGDLVLNN-KVIEMYGKCGSMTDARRVFDHMADRSMD-SWHLMINGYADNGLGDEGLQLF 366 (623)
Q Consensus 289 ~~g~~~~A~~l~~~m~~~g~~pd~~~y~-~Li~~y~k~g~~~~A~~lf~~m~~~~~~-tyn~Li~~~~~~g~~eeA~~l~ 366 (623)
..++.+++..+++.|.- +.|+..-.. --.-.+...|++++|+++|+++.+.... .|..-+.++|-...-|-....+
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~ 99 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVH 99 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHH
Confidence 36788888888888876 444432221 1233456778888888888888776543 5666666655544444444433
Q ss_pred -HHHHHcCCCCCHHH
Q 044791 367 -EQMRKLGLQPNEQT 380 (623)
Q Consensus 367 -~eM~~~g~~Pd~~t 380 (623)
.++++.|-.++.+.
T Consensus 100 A~~~le~~~~~~a~~ 114 (153)
T TIGR02561 100 ADEVLARDADADAVA 114 (153)
T ss_pred HHHHHHhCCCHhHHH
Confidence 33444444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.63 E-value=17 Score=42.19 Aligned_cols=204 Identities=12% Similarity=0.035 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHH------------------cCC--CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 044791 247 PPSVADLARLCQEGKVKEAIELMD------------------KGV--KADASCFYTLFELCGNPKWYENAKKVHDYFLQS 306 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~------------------~~~--~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 306 (623)
.+.+.++.+|...+++-.=.-+++ +|+ .........-|+.+++...++.|+.+-+. .
T Consensus 284 ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~---~ 360 (933)
T KOG2114|consen 284 SSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKS---Q 360 (933)
T ss_pred cchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHh---c
Confidence 455677777777776533222221 111 12233455667777787778888776533 3
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044791 307 TIRGD--LVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV 384 (623)
Q Consensus 307 g~~pd--~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~l 384 (623)
+..+| ....-...+-+.+.|++++|..-|-+-...-. =..+|.-|....+..+-..+++.+.+.|+.- ...-+.|
T Consensus 361 ~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~-~dhttlL 437 (933)
T KOG2114|consen 361 HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--PSEVIKKFLDAQRIKNLTSYLEALHKKGLAN-SDHTTLL 437 (933)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--hHHHHHHhcCHHHHHHHHHHHHHHHHccccc-chhHHHH
Confidence 33333 12333344555678999999988866543221 2346677788888888899999999999874 3444578
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChh
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDID 464 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~ 464 (623)
|.+|.+.++.++-.++..... + |.. ..-....+..+.+.+-.++|.-+-.+ ... +....+.++. ..++++
T Consensus 438 LncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~snyl~~a~~LA~k-~~~--he~vl~ille---~~~ny~ 507 (933)
T KOG2114|consen 438 LNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRKSNYLDEAELLATK-FKK--HEWVLDILLE---DLHNYE 507 (933)
T ss_pred HHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHHhChHHHHHHHHHH-hcc--CHHHHHHHHH---HhcCHH
Confidence 999999999999888776544 2 322 11234567888888999999888877 432 3344444443 345565
Q ss_pred HH
Q 044791 465 LE 466 (623)
Q Consensus 465 ~A 466 (623)
+|
T Consensus 508 eA 509 (933)
T KOG2114|consen 508 EA 509 (933)
T ss_pred HH
Confidence 33
|
|
| >KOG2236 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.48 E-value=1.4 Score=47.04 Aligned_cols=9 Identities=44% Similarity=0.350 Sum_probs=3.8
Q ss_pred hhhhhhhhh
Q 044791 85 NQWASQQEQ 93 (623)
Q Consensus 85 ~~~~~~~~~ 93 (623)
+.|+..|+|
T Consensus 409 ~s~p~pq~q 417 (483)
T KOG2236|consen 409 NSGPSPQQQ 417 (483)
T ss_pred CCCCCcccC
Confidence 444444333
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.45 E-value=11 Score=40.63 Aligned_cols=74 Identities=22% Similarity=0.148 Sum_probs=43.0
Q ss_pred hHHHHHHhcCCHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhH
Q 044791 419 GLVGVLGKCGHLFEAQQFIEQKLP--FEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTA 496 (623)
Q Consensus 419 ~Li~~~~k~g~~e~A~~lf~~~m~--~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~ 496 (623)
.|+.-|.-.|++.||..++++ ++ ..-..+.+.+++.+.-+.|+-. .+++++.+.-..+.+ |-
T Consensus 514 ~LLeEY~~~GdisEA~~Cike-LgmPfFhHEvVkkAlVm~mEkk~d~t---~~ldLLk~cf~sglI------------T~ 577 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKE-LGMPFFHHEVVKKALVMVMEKKGDST---MILDLLKECFKSGLI------------TT 577 (645)
T ss_pred HHHHHHHhccchHHHHHHHHH-hCCCcchHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHhcCce------------eH
Confidence 455556666777777777776 44 3345566777777777666655 444555444434332 55
Q ss_pred HHHhhhcCcccc
Q 044791 497 ISILDGKSRLVE 508 (623)
Q Consensus 497 ~~li~~~~~~~~ 508 (623)
+-|-.+|.|..+
T Consensus 578 nQMtkGf~RV~d 589 (645)
T KOG0403|consen 578 NQMTKGFERVYD 589 (645)
T ss_pred HHhhhhhhhhhc
Confidence 555556555543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.41 E-value=51 Score=36.40 Aligned_cols=181 Identities=10% Similarity=0.084 Sum_probs=122.9
Q ss_pred CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCh--HHHHHHHH
Q 044791 274 KADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSM--DSWHLMIN 351 (623)
Q Consensus 274 ~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~--~tyn~Li~ 351 (623)
..|..+.-++|..++....+.-++.+..+|+..| -+-..|-.++.+|... .-+.-..+++++.+-+. +...--+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 3566778888999999888888999999999865 3567788899999888 55777788887765422 23333334
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHh
Q 044791 352 GYADNGLGDEGLQLFEQMRKLGLQP--N---EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGK 426 (623)
Q Consensus 352 ~~~~~g~~eeA~~l~~eM~~~g~~P--d---~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k 426 (623)
.+...++.+++..+|.+....-+.- + -..|.-|+..- ..+.|.-+.+...+..+.|..--.+.+--+-.-|..
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444488888999998887652220 1 11343333321 356777788887877776666666666666677888
Q ss_pred cCCHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHH
Q 044791 427 CGHLFEAQQFIEQKLP-FEPTAEFWEALRNYARI 459 (623)
Q Consensus 427 ~g~~e~A~~lf~~~m~-~~Pd~~ty~~Li~a~~~ 459 (623)
..++.+|++++...++ .+.|...-..+|.-+..
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 8899999999987444 34466555566655544
|
|
| >KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.78 E-value=4 Score=44.79 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCCCccccchhhhhhhhh
Q 044791 67 QSPLSDSRAFPDQSNFNNNQWASQQEQ 93 (623)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (623)
......+.+.+++++.++++|++++.+
T Consensus 300 gdH~h~~~~~p~dq~hpqA~~~~~~~p 326 (757)
T KOG4368|consen 300 GPHDQIPPNKPFDQPHPVAPWGQQQPP 326 (757)
T ss_pred CcccccCCCCCCCCCCCCCCCCCCCCc
Confidence 333334445556666666778777433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.22 E-value=26 Score=33.26 Aligned_cols=131 Identities=15% Similarity=0.076 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhhcCChH--HH-----H
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV-LNNKVIEMYGKCGSMTDARRVFDHMADRSMD--SW-----H 347 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~--ty-----n 347 (623)
....|..-++. +..+..++|+.-|..+.+.|...-.+ .---+.......|+..+|...|+++-.-..+ .. -
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 34567666664 45677899999999999987653221 1122344566789999999999998653222 11 1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
--...+...|-|+......+-+-..|-..-...-..|.-+-.+.|++.+|...|..+..+
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 112236778899998888877766655555566677877888999999999999988864
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=86.08 E-value=1.4 Score=29.86 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhh
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~ 339 (623)
+|+.|..+|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788889999999999999988743
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=86.04 E-value=48 Score=35.05 Aligned_cols=126 Identities=14% Similarity=0.087 Sum_probs=87.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-------CChH---
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTI-----RGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD-------RSMD--- 344 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-----~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~-------~~~~--- 344 (623)
.-+|..+....+.++.+++.|+...+... .....+|-.|...|.+..++++|.-...+..+ .|+.
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 34466677777889999999988765321 12357889999999999999998766554432 3433
Q ss_pred ---HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 345 ---SWHLMINGYADNGLGDEGLQLFEQMRKLGL-QPNEQT----FLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 345 ---tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~-~Pd~~t----y~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
+..-|..++...|+...|.+.-+|..+..+ .-|..+ .-.+.+.|...|+.|.|+.-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 233355567888998888888877653321 124333 4556677888999999998887655
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=85.28 E-value=47 Score=33.95 Aligned_cols=213 Identities=14% Similarity=0.131 Sum_probs=122.2
Q ss_pred HHcCCHHHHHHHHHc------CCCCCH------HHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCCCC-----
Q 044791 257 CQEGKVKEAIELMDK------GVKADA------SCFYTLFELCGNPKWYENAKKVHDYFLQS--------TIRGD----- 311 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~------~~~pd~------~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~--------g~~pd----- 311 (623)
.+.|+++.|..++.+ ...|+. ..|+.-...+.+..+++.|...+++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 478999999999854 233443 23444444444443888888887765543 12333
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHhhc--CC-hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044791 312 LVLNNKVIEMYGKCGSMT---DARRVFDHMAD--RS-MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVF 385 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~---~A~~lf~~m~~--~~-~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li 385 (623)
..+...|+.+|...+..+ +|.++++.+.. ++ ...|-.-|..+.+.++.+++.+.+.+|+..- .-....+..++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 356677888888877654 56666666643 23 4466677778888999999999999999762 22334455444
Q ss_pred HHH---HhcCCHHHHHHHHHHHHhhcCCCCCccch--hhHHHH-H--Hhc------CCHHHHHHHHHh---hCCCCCCHH
Q 044791 386 SAC---GSADAIEEAFIHFESMKSEFGISPGTEHY--LGLVGV-L--GKC------GHLFEAQQFIEQ---KLPFEPTAE 448 (623)
Q Consensus 386 ~a~---~~~g~~e~A~~l~~~m~~~~g~~p~~~ty--~~Li~~-~--~k~------g~~e~A~~lf~~---~m~~~Pd~~ 448 (623)
..+ .... .+.|...++.+... .+.+....+ ..++.. + ... ++++.+.++++. .....-+..
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~-r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLN-RFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 444 4433 35666666666654 455443211 111111 1 111 125555556664 122222322
Q ss_pred H--------HHHHHHHHHHcCChhHHHHHHHHH
Q 044791 449 F--------WEALRNYARIHGDIDLEDHAEELM 473 (623)
Q Consensus 449 t--------y~~Li~a~~~~g~~~~A~~~~~~~ 473 (623)
+ |+.. ..+.+.++++.|.+.++..
T Consensus 241 ~~~a~~~LLW~~~-~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 241 AASAIHTLLWNKG-KKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHH-HHHHhhcCHHHHHHHHHHH
Confidence 2 3332 2355688899888877754
|
It is also involved in sporulation []. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.16 E-value=34 Score=32.23 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=22.6
Q ss_pred hHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 419 GLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 419 ~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
.+++.+...|++-+|+++.+. .. .-+......++.+..+.+|...-..+++.+.+
T Consensus 94 ~iievLL~~g~vl~ALr~ar~-~~-~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQ-YH-KVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHH-cC-CcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444555555555555444 21 01112223344444444444434444444433
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.52 E-value=17 Score=37.74 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh---cCCCCCccch
Q 044791 380 TFLAVFSACGSADAIEEAFIHFESMKSE---FGISPGTEHY 417 (623)
Q Consensus 380 ty~~li~a~~~~g~~e~A~~l~~~m~~~---~g~~p~~~ty 417 (623)
.+......||+.|+-+.|++.+....++ .|.+.|+..+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~ 146 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFY 146 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHH
Confidence 4444555666666666666655544332 1444454433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=84.27 E-value=36 Score=32.09 Aligned_cols=128 Identities=14% Similarity=0.103 Sum_probs=78.4
Q ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHH
Q 044791 268 LMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWH 347 (623)
Q Consensus 268 l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn 347 (623)
+.+.++.++...|..+++.+.+.|++.. +..++..++-+|......++-.+.. ....+..+=-.|.++=-..+.
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~~~~~ 93 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLGTAYE 93 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhhhhHH
Confidence 3456788888888888888888887554 3445555666666555444433332 233444444445444334677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
.++..+...|++-+|+++.+..... +......++.+..+.+|...=..+|.-..
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7888888888888888887765321 22233456677667666555555554444
|
|
| >PF14669 Asp_Glu_race_2: Putative aspartate racemase | Back alignment and domain information |
|---|
Probab=83.80 E-value=29 Score=33.37 Aligned_cols=168 Identities=9% Similarity=0.059 Sum_probs=83.1
Q ss_pred CCCCCHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHhhcC--
Q 044791 272 GVKADASCFYTLFELCGN----PKWYENAKKVHDYFLQSTIRGDLV----LNNKVIEMYGKCGSMTDARRVFDHMADR-- 341 (623)
Q Consensus 272 ~~~pd~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~----~y~~Li~~y~k~g~~~~A~~lf~~m~~~-- 341 (623)
|+.+|...++-++..+.. .+.++.+.++-.+....++..+.. ..-+-|..|-+.|||.+--.+|-..+..
T Consensus 3 Gm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~gce 82 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMGCE 82 (233)
T ss_pred cccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhhcC
Confidence 566677777777665543 345555556555655555554322 2223344455556666655555433211
Q ss_pred ---ChHH-HHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 044791 342 ---SMDS-WHLMINGYADNG--LGDEGLQLFEQMRKLGLQPNEQ-------TFLAVFSACGSADAIEEAFIHFESMKSEF 408 (623)
Q Consensus 342 ---~~~t-yn~Li~~~~~~g--~~eeA~~l~~eM~~~g~~Pd~~-------ty~~li~a~~~~g~~e~A~~l~~~m~~~~ 408 (623)
|..- ...+..++.+.- +..--+..|.+.+-....-|.+ +=.+++-.|-+.-++.++.++++.|-+-.
T Consensus 83 ~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~ 162 (233)
T PF14669_consen 83 KFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHELQ 162 (233)
T ss_pred CHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 111111111111 1111122222322222222221 22355666777778888888887776420
Q ss_pred -------C------CCCCccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 409 -------G------ISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 409 -------g------~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
| ..+-....|.-...+.+.|.+|.|+.++++
T Consensus 163 i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 163 IHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 1 122334556666778888888888888877
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.53 E-value=73 Score=35.23 Aligned_cols=166 Identities=9% Similarity=0.016 Sum_probs=118.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 310 GDLVLNNKVIEMYGKCGSMTDARRVFDHMADRS--MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387 (623)
Q Consensus 310 pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~--~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a 387 (623)
.|....-+++..+...-.+.-++.+..+|.+-+ -..|-.++..|..+ .-+.-..+|+++++..+ |.+.+.--+..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHH
Confidence 355566788999999888999999999998644 44899999999999 56899999999998744 45555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCC------ccchhhHHHHHHhcCCHHHHHHHHHh---hCCCCCCHHHHHHHHHHHH
Q 044791 388 CGSADAIEEAFIHFESMKSEFGISPG------TEHYLGLVGVLGKCGHLFEAQQFIEQ---KLPFEPTAEFWEALRNYAR 458 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~~g~~p~------~~ty~~Li~~~~k~g~~e~A~~lf~~---~m~~~Pd~~ty~~Li~a~~ 458 (623)
+.+.++.+.+..+|..+..+ +-|. ...|..|+..- ..+.|..+.+..+ ..+...-.+.+.-+-.-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55669999999999888753 2221 12344444322 2456666666555 1333445567777778888
Q ss_pred HcCChhHHHHHHHHHHhcCCCCCC
Q 044791 459 IHGDIDLEDHAEELMVDLDPSKAD 482 (623)
Q Consensus 459 ~~g~~~~A~~~~~~~~~m~~~~~~ 482 (623)
...++++|.+++..+.+.+.+++-
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ 240 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVW 240 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhh
Confidence 899999999999988888777654
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.38 E-value=0.31 Score=44.34 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=24.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 284 FELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFD 336 (623)
Q Consensus 284 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~ 336 (623)
+..+.+.+.......+++.+.+.+..-+....+.|+..|++.++.++.+++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444445555555555555544433445555555555555544444444433
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13388 DUF4106: Protein of unknown function (DUF4106) | Back alignment and domain information |
|---|
Probab=82.80 E-value=2.5 Score=42.38 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHcC-CCCCHHHHH
Q 044791 260 GKVKEAIELMDKG-VKADASCFY 281 (623)
Q Consensus 260 g~~~~A~~l~~~~-~~pd~~ty~ 281 (623)
.++.+|+.-|++| -.|+.++|.
T Consensus 285 drykeai~kfk~gntdpnlfsfm 307 (422)
T PF13388_consen 285 DRYKEAIRKFKEGNTDPNLFSFM 307 (422)
T ss_pred HHHHHHHHHhhcCCCCchHHHHH
Confidence 4577788777765 346655553
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.41 E-value=8.7 Score=39.29 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hcCCCCCccchhh
Q 044791 344 DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS----EFGISPGTEHYLG 419 (623)
Q Consensus 344 ~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~----~~g~~p~~~ty~~ 419 (623)
.++..++..+...|+++.+.+.++++.... .-+...|..+|.+|...|+...|+..|+.+.+ ..|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 367777788888888888888888887753 23677888888888888888888888777664 2355555544443
Q ss_pred H
Q 044791 420 L 420 (623)
Q Consensus 420 L 420 (623)
.
T Consensus 233 y 233 (280)
T COG3629 233 Y 233 (280)
T ss_pred H
Confidence 3
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=82.36 E-value=19 Score=32.54 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 382 LAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 382 ~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
...++++...|+-|.-.+++.++.+ +-.++....-.+..+|.+.|...+|.+++.+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3445555556666666666655542 2334444445556666666666666666555
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.28 E-value=3.5 Score=45.74 Aligned_cols=99 Identities=14% Similarity=0.031 Sum_probs=64.2
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFE 432 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~ 432 (623)
....|+++.|..++...- -..-+.++.-+.+.|..++|+++-- |... -.+...+.|+++.
T Consensus 596 ~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~----------D~d~---rFelal~lgrl~i 655 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELST----------DPDQ---RFELALKLGRLDI 655 (794)
T ss_pred HhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCC----------Chhh---hhhhhhhcCcHHH
Confidence 344566666666554332 2234556666777777777765432 2111 1334567788888
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 433 AQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 433 A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
|.++..+ .-+..-|..|.++....|++..|.+++....+
T Consensus 656 A~~la~e----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 656 AFDLAVE----ANSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHh----hcchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 8888777 34677888888888888888888888776544
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=82.19 E-value=16 Score=42.11 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHH---HcCCCCCHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCCCCH
Q 044791 246 LPPSVADLARLCQEGKVKEAIELM---DKGVKADASCFYTLFELCGNPKW-------YENAKKVHDYFLQSTIRGDL 312 (623)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~A~~l~---~~~~~pd~~ty~~Ll~~~~~~g~-------~~~A~~l~~~m~~~g~~pd~ 312 (623)
-...|.+|--|.|.|++++|.++. +.........|...+..|+...+ -+....-|++..+.....|.
T Consensus 111 ~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 111 GDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp TEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred CCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 356778999999999999999999 34556666678888998877532 23455556665554332253
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=82.08 E-value=3.9 Score=28.90 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQS 306 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 306 (623)
++..+..+|...|++++|+++|+++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666664
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=81.96 E-value=5.3 Score=28.21 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
|..+..+|.+.|++++|+++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.57 E-value=22 Score=34.40 Aligned_cols=89 Identities=16% Similarity=0.093 Sum_probs=43.2
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchh-hH---HHHH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQP----NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYL-GL---VGVL 424 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~P----d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~-~L---i~~~ 424 (623)
+.++|++++|..-|.+.++.-... -.+.|..-..++.+.+.++.|++--...+ .+.| ||+ +| ..+|
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~p---ty~kAl~RRAeay 178 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNP---TYEKALERRAEAY 178 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCc---hhHHHHHHHHHHH
Confidence 455566666666665555431110 12334444445555566655555443333 2222 122 11 2345
Q ss_pred HhcCCHHHHHHHHHhhCCCCCCH
Q 044791 425 GKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 425 ~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
-+..++++|++=|.++++..|..
T Consensus 179 ek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcch
Confidence 66666777777776645555544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.31 E-value=31 Score=38.67 Aligned_cols=150 Identities=13% Similarity=0.000 Sum_probs=100.0
Q ss_pred HHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 257 CQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFD 336 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~ 336 (623)
.-.|+++.|-.++-.-. ...-+.++.-+.+.|-.++|+++- +|..- -.....+.|+++.|..+..
T Consensus 597 vmrrd~~~a~~vLp~I~---k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP---KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCc---hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHH
Confidence 44567777755442211 234556666667777777666542 23222 1234457799999988765
Q ss_pred HhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccc
Q 044791 337 HMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEH 416 (623)
Q Consensus 337 ~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~t 416 (623)
+. .+..-|..|.++....|++..|.+.|.+... |..|+..+...|+-+....+-...++. |..
T Consensus 662 e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~-g~~----- 724 (794)
T KOG0276|consen 662 EA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ-GKN----- 724 (794)
T ss_pred hh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh-ccc-----
Confidence 44 4667899999999999999999999887654 556777777778877666555555544 442
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHh
Q 044791 417 YLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 417 y~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
|.-.-+|...|+++++.+++.+
T Consensus 725 -N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 725 -NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred -chHHHHHHHcCCHHHHHHHHHh
Confidence 2334467788999999999988
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.83 E-value=56 Score=31.58 Aligned_cols=126 Identities=7% Similarity=0.016 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHhhcCC-hHHHH-----HH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNK--VIEMYGKCGSMTDARRVFDHMADRS-MDSWH-----LM 349 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~--Li~~y~k~g~~~~A~~lf~~m~~~~-~~tyn-----~L 349 (623)
..|..++.+... +.. +.....+.+....-.-..-++.+ +...+..+|++++|+.-++...... -..+. -|
T Consensus 55 ~~Y~~~i~~~~a-k~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL 132 (207)
T COG2976 55 AQYQNAIKAVQA-KKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL 132 (207)
T ss_pred HHHHHHHHHHhc-CCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 446666665532 222 34444444444321211122222 2344566677777777776554221 11222 23
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 350 INGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 350 i~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
.......|.+|+|+.+++...+.+.. ......-.+.+...|+-++|+.-|+.....
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 34456667777777777665554321 122233345566666666776666666543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.75 E-value=3.2 Score=28.31 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
+++.|...|...|++++|+.++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 566666666666666666666666553
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=80.72 E-value=52 Score=33.37 Aligned_cols=151 Identities=16% Similarity=0.154 Sum_probs=67.9
Q ss_pred HcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH-HHH
Q 044791 258 QEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKK----VHDYFLQSTIRGDLVLNNKVIEMYGKCGSMT-DAR 332 (623)
Q Consensus 258 ~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~----l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~-~A~ 332 (623)
+.+++++|++++-.| ...+.+.|....|-+ +++-..+.+...|......|+..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 567888888877443 122233333333332 2333334455556555556665555443221 112
Q ss_pred HHHHHhh---------cCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044791 333 RVFDHMA---------DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFES 403 (623)
Q Consensus 333 ~lf~~m~---------~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~ 403 (623)
++.+.+. ..+......+...|.+.|++.+|...|-. |-.++...+..++..+...|...++--++-+
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~----~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~R 146 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL----GTDPSAFAYVMLLEEWSTKGYPSEADLFIAR 146 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT----S-HHHHHHHHHHHHHHHHHTSS--HHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh----cCChhHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 2222221 12445777777888888888887776532 1222333333344433333443333222211
Q ss_pred HHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 404 MKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 404 m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
.+-.|.-.|++..|..+++.
T Consensus 147 ----------------aVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 147 ----------------AVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp ----------------HHHHHHHTTBHHHHHHHHHH
T ss_pred ----------------HHHHHHHhcCHHHHHHHHHH
Confidence 22335556777777766655
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.71 E-value=95 Score=36.07 Aligned_cols=90 Identities=19% Similarity=0.364 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHH
Q 044791 360 DEGLQLFEQMRKLGLQP-----NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQ 434 (623)
Q Consensus 360 eeA~~l~~eM~~~g~~P-----d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~ 434 (623)
+..+.+|.+.....+-| ..+-....+..|.+.|-+++-.-++.+|- .++.+|.-.--+.+++++|+
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~AI 681 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKAI 681 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHHH
Confidence 55677777765544433 11233445666666666777666666663 23455555555667777777
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 044791 435 QFIEQKLPFEPTAEFWEALRNYARIHGD 462 (623)
Q Consensus 435 ~lf~~~m~~~Pd~~ty~~Li~a~~~~g~ 462 (623)
++.++ .-|...|..||+.....-.
T Consensus 682 efvKe----q~D~eLWe~LI~~~ldkPe 705 (846)
T KOG2066|consen 682 EFVKE----QDDSELWEDLINYSLDKPE 705 (846)
T ss_pred HHHHh----cCCHHHHHHHHHHhhcCcH
Confidence 77777 5678888888887664433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.68 E-value=3.9 Score=42.40 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=63.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCC
Q 044791 351 NGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGH 429 (623)
Q Consensus 351 ~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~ 429 (623)
+.|.+.|+++||+..|..-.. +.| +.++|..-..+|.+..++..|+.-.+..+.- + ..-+..|.--+.+-...|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-D-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-h-HHHHHHHHHHHHHHHHHhh
Confidence 679999999999999988665 466 8899999999999999988777665555421 0 0012223333333333466
Q ss_pred HHHHHHHHHhhCCCCCCH
Q 044791 430 LFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 430 ~e~A~~lf~~~m~~~Pd~ 447 (623)
.++|.+-++.+++++|+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhHHHHHhhCccc
Confidence 777777777767778874
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=80.18 E-value=75 Score=32.64 Aligned_cols=110 Identities=15% Similarity=0.225 Sum_probs=81.1
Q ss_pred cCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHH
Q 044791 356 NGLGDEGLQLFEQMRK-LGLQPNEQTFLAVFSACGS--ADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFE 432 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~-~g~~Pd~~ty~~li~a~~~--~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~ 432 (623)
+..+.+|+.+|+.... ..+--|..+...++..... ...+..-.++.+-+...++-.++..+...+|+.+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3346677777773221 2344566667677776554 234555567777777777788888889999999999999999
Q ss_pred HHHHHHhhCC---CCCCHHHHHHHHHHHHHcCChhH
Q 044791 433 AQQFIEQKLP---FEPTAEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 433 A~~lf~~~m~---~~Pd~~ty~~Li~a~~~~g~~~~ 465 (623)
-.++++...+ ..-|...|..+|+.....||...
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~ 256 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV 256 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH
Confidence 9999999333 23477899999999999999863
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=80.10 E-value=80 Score=32.88 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=29.8
Q ss_pred HHHHHHcCCHHHHHHHHHcCC--CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 044791 253 LARLCQEGKVKEAIELMDKGV--KADASCFYTLFELCGNPKWYENAKKVHDYFLQ 305 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~~--~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~ 305 (623)
..+.-+.|+|+...++....- .++...|.++... +.++++++..+.+.+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 455667778877555554322 2344444444444 66777777777766654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 5e-10
Identities = 44/288 (15%), Positives = 94/288 (32%), Gaps = 66/288 (22%)
Query: 198 PNQWNNQQNQGYPQARNSYQQVSPGHQIPNQLNNV-------PNNMNQCPAGDQVLPPSV 250
W+N ++ + + S P + + P + + +P +
Sbjct: 341 LATWDNWKHVNCDKLTTI-IESSLNVLEPAEYRKMFDRLSVFPPSAH--------IPTIL 391
Query: 251 ADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHD-YF-LQSTI 308
L+ + + + + +++K K Y+L E PK E+ + Y L+ +
Sbjct: 392 --LSLIWFDVIKSDVMVVVNKLHK------YSLVE--KQPK--ESTISIPSIYLELKVKL 439
Query: 309 RGDLVLNNKVIEMYGKCGSMTDARRVFD--HMADRSMDS---WHLMINGY----ADNGLG 359
+ L+ +++ Y + + FD + +D H+ G+ ++
Sbjct: 440 ENEYALHRSIVDHY-------NIPKTFDSDDLIPPYLDQYFYSHI---GHHLKNIEHP-- 487
Query: 360 DEGLQLFEQMRKLGLQPN--EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHY 417
+ R + L EQ +A ++ +I + K I Y
Sbjct: 488 ----ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--ICDNDPKY 541
Query: 418 LGLVGVLG----KCG-HLFEAQQ--FIEQKLPFEPTAEFWEALRNYAR 458
LV + K +L ++ + L E A F EA + R
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-05
Identities = 67/457 (14%), Positives = 122/457 (26%), Gaps = 165/457 (36%)
Query: 146 QYQNPSNNQEYQRSNYQGQRSP--NQGQVYPHQQQPHSNQYQNPGNQNFQQPRSPNQWNN 203
+ Y QR N QV+ N + QP
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA------------KYNVSRLQP-------- 136
Query: 204 QQNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVK 263
Y + R + ++ P + + + + G + D +C KV+
Sbjct: 137 -----YLKLRQALLELRPAKNV------LIDGVLGS--GKTWV---ALD---VCLSYKVQ 177
Query: 264 EAIELMDKGV--------KADASCFYTLFELCGN--PKW-------------YENAKKVH 300
MD + + + L +L P W + +
Sbjct: 178 CK---MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 301 DYFLQSTIRGD--LVLNN----KVIEMYG-KCGSM--TDARRVFDHMADRSMDSWHLMIN 351
L+S + LVL N K + C + T ++V D ++ + + H+ ++
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS--AATTTHISLD 292
Query: 352 GYADNGLGDEGLQLFEQ---MRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEF 408
++ DE L + R L P E
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDL-PRE--------VL-------------------- 323
Query: 409 GISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDH 468
+P + ++ E T + W+ H + D
Sbjct: 324 TTNP-----R-RLSIIA------------ESIRDGLATWDNWK--------HVNCDKLTT 357
Query: 469 AEELMVD-LDPSKAD---------PK--KIPTPPPKKRTAISIL--DGKSRLVEFRNPTL 514
E ++ L+P++ P IPT +S++ D V L
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI------LLSLIWFDVIKSDVMVVVNKL 411
Query: 515 YRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQA 551
++ Q KEST + I E K +
Sbjct: 412 HK---YSLVEKQPKEST------ISIPSIYLELKVKL 439
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 4e-09
Identities = 29/143 (20%), Positives = 41/143 (28%), Gaps = 3/143 (2%)
Query: 98 SYPNQGHGYATNQYSSDRNYPNRGYPNQGQRLPIQGQAYPQQHQPG-NHQYQNPSNNQEY 156
S+ + Y Q +N P Q A Q G Q PS Q+
Sbjct: 2 SHHKK-RVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60
Query: 157 QRSNYQGQRSPNQGQVYPHQQQPHSNQYQNPGNQNFQQPRSPNQWNNQ-QNQGYPQARNS 215
+ Q Q Q H + + QP+ P Q Q Q P A +
Sbjct: 61 FLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPA 120
Query: 216 YQQVSPGHQIPNQLNNVPNNMNQ 238
Y Q S + N ++
Sbjct: 121 YGQPSAAMGQNMRPMNQLYPIDL 143
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 6e-09
Identities = 25/137 (18%), Positives = 33/137 (24%), Gaps = 6/137 (4%)
Query: 115 RNYPNRGYPNQGQRLPIQGQA---YPQQHQPGNHQYQNPSNNQEYQRSNYQGQRSPNQGQ 171
R YP P+Q A PQ Y + + Q+ Q
Sbjct: 7 RVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQ 66
Query: 172 VYPHQQQPHSNQYQNPGNQNFQQPRSPNQWNNQQNQGYPQARNSYQQVSPGHQIPNQLNN 231
HQQ + N + + PN + Q QQ Q
Sbjct: 67 EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQP-- 124
Query: 232 VPNNMNQCPAGDQVLPP 248
M Q L P
Sbjct: 125 -SAAMGQNMRPMNQLYP 140
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 8e-09
Identities = 21/173 (12%), Positives = 38/173 (21%), Gaps = 3/173 (1%)
Query: 80 SNFNNNQWASQQEQNNHLSYPNQGHGYATNQYSSDRNYPNRGYPNQGQRLPIQGQAYPQQ 139
S+ + Q Q + P Q + G + + Q
Sbjct: 2 SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61
Query: 140 HQPGNHQYQNPSNNQEYQRSNYQGQRSPNQGQVYPHQQQPHSNQYQNPGNQNFQQPRSPN 199
P Q + ++ P QP Q QQP +
Sbjct: 62 LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDP--NAYMQPQVPVQMGTPLQQQQQPMAAP 119
Query: 200 QWNNQQNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVAD 252
+ Q + Q Q+ P + + + P +
Sbjct: 120 AY-GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVP 171
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 2e-08
Identities = 23/205 (11%), Positives = 44/205 (21%), Gaps = 13/205 (6%)
Query: 61 PPPQPPQSPLSDSRAFPDQSNFNNNQWASQQEQNNHLSYPNQGHGYATNQYSSDRNYPNR 120
P Q ++ + F Q + SY G S +
Sbjct: 10 PQAQLQYGQ--NATPLQQPAQFMPPQDPAAAGM----SYGQMGMPPQGAVPSMGQQQFLT 63
Query: 121 GYPNQGQRLPIQGQAYPQQHQPGNHQYQNPSNNQEYQRSNYQGQRSPNQGQVYPHQQQPH 180
Q + Q N +P+ + Q G Q Q
Sbjct: 64 PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQ 123
Query: 181 SNQYQNPGNQNFQQPRSPNQWNNQQN-------QGYPQARNSYQQVSPGHQIPNQLNNVP 233
+ + Q + P + + P + +
Sbjct: 124 PSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIR 183
Query: 234 NNMNQCPAGDQVLPPSVADLARLCQ 258
+ +N P +L S + +
Sbjct: 184 STLNAVPKNSSLLKKSKLPFGLVIR 208
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 54.8 bits (131), Expect = 6e-08
Identities = 33/209 (15%), Positives = 45/209 (21%), Gaps = 12/209 (5%)
Query: 59 NTPPPQPPQSPLSDSRAFPDQSNFNNNQWASQQEQNNHLSYPNQGHGYATNQYSSDRNYP 118
PPQ P + QQ +Q AT + +
Sbjct: 28 QFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMN---DMH 84
Query: 119 NRGYPNQGQRLPIQGQAYPQQHQPGNHQYQNPSNNQEYQRSNYQGQRSPNQGQVYPHQQQ 178
P +Q Q Q P Q Q + Q S GQ Q+YP
Sbjct: 85 LHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYP-IDL 143
Query: 179 PHSNQYQNPGNQNFQQPRSPNQWNNQQNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQ 238
P A Y + + LN VP N +
Sbjct: 144 LTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRST--------LNAVPKNSSL 195
Query: 239 CPAGDQVLPPSVADLARLCQEGKVKEAIE 267
+ L + E
Sbjct: 196 LKKSKLPFGLVIRPYQHLYDDIDPPPLNE 224
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.1 bits (128), Expect = 1e-07
Identities = 16/126 (12%), Positives = 40/126 (31%), Gaps = 7/126 (5%)
Query: 294 ENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR-------SMDSW 346
+ + Q+ + G + + A + + ++D +
Sbjct: 109 DVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY 168
Query: 347 HLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406
+ ++ G+A G E + + ++ GL P+ ++ A G D S
Sbjct: 169 NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS 228
Query: 407 EFGISP 412
+ G+
Sbjct: 229 QEGLKL 234
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 623 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.95 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.88 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.84 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.79 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.79 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.78 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.72 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.7 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.7 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.69 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.68 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.68 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.67 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.66 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.64 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.63 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.62 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.6 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.57 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.53 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.52 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.52 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.5 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.5 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.48 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.46 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.45 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.42 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.39 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.38 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.37 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.37 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.37 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.36 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.36 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.35 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.35 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.34 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.34 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.34 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.32 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.32 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.3 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.29 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.26 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.26 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.24 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.24 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.23 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.22 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.22 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.19 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.17 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.16 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.16 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.15 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.13 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.12 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.12 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.11 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.09 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.08 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.08 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.07 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.05 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.0 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.95 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.95 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.9 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.89 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.88 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.85 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.84 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.82 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.81 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.81 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.8 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.76 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.75 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.74 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.71 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.71 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.7 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.69 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.68 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.68 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.66 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.63 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.63 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.63 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.61 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.6 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.59 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.58 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.57 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.56 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.56 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.55 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.54 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.54 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.47 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.46 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.44 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.42 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.41 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.4 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.36 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.35 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.35 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.33 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.3 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.28 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.28 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.28 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.27 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.26 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.25 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.25 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.25 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.24 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.21 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.21 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.19 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.17 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.17 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.16 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.15 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.15 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.14 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.14 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.14 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.13 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.13 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.12 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.11 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.1 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.1 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.1 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.08 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.07 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.06 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.03 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.99 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.98 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.98 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.97 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.96 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.96 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.95 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.92 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.9 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.9 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.88 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.88 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.85 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.85 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.83 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.83 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.8 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.79 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.76 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.74 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.74 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.71 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.69 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.69 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.65 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.65 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.62 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.62 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.62 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.61 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.6 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.57 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.56 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.55 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.37 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.28 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.26 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.2 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.17 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.09 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.03 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.96 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.94 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.93 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.88 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.81 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.8 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.74 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.69 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.66 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.65 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.61 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.58 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.12 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.08 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.74 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.72 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.58 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 95.55 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.28 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.09 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.41 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 94.38 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.37 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 94.35 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.25 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.22 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.05 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.84 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.5 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 92.37 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 91.98 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 91.11 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.46 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.27 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.08 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 89.48 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.26 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.49 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.18 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.49 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.59 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 83.92 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 83.7 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 83.69 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.09 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 81.68 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 81.63 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.19 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-29 Score=275.43 Aligned_cols=187 Identities=9% Similarity=0.130 Sum_probs=160.3
Q ss_pred CCCCCH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHhhc-
Q 044791 272 GVKADA-SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS---------MTDARRVFDHMAD- 340 (623)
Q Consensus 272 ~~~pd~-~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~---------~~~A~~lf~~m~~- 340 (623)
++.... ..++.+|++|++.|++++|+++|++|++.|+.||..+||+||.+|++.+. +++|.++|++|.+
T Consensus 20 ~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~ 99 (501)
T 4g26_A 20 AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD 99 (501)
T ss_dssp ----CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh
Confidence 444433 45888899999999999999999999999999999999999999887664 6889999999875
Q ss_pred ---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccch
Q 044791 341 ---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHY 417 (623)
Q Consensus 341 ---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty 417 (623)
+|++|||+||.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+. |+.||..||
T Consensus 100 G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty 178 (501)
T 4g26_A 100 KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPEL 178 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHH
Confidence 5888999999999999999999999999999999999999999999999999999999999999876 999999999
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHc
Q 044791 418 LGLVGVLGKCGHLFEAQQFIEQKL---PFEPTAEFWEALRNYARIH 460 (623)
Q Consensus 418 ~~Li~~~~k~g~~e~A~~lf~~~m---~~~Pd~~ty~~Li~a~~~~ 460 (623)
++||.+|++.|++++|.++|++ | +..|+..||++|+..|+..
T Consensus 179 ~~Li~~~~~~g~~d~A~~ll~~-Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 179 AALLKVSMDTKNADKVYKTLQR-LRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-HHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHhhCCCHHHHHHHHHH-HHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999988 5 3788999999998888753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=272.61 Aligned_cols=180 Identities=12% Similarity=0.151 Sum_probs=171.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHH----cCCCCCHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCCCCHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMD----KGVKADASCFYTLFELCGNPKW---------YENAKKVHDYFLQSTIRGDLV 313 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~----~~~~pd~~ty~~Ll~~~~~~g~---------~~~A~~l~~~m~~~g~~pd~~ 313 (623)
..++.+|.+|++.|++++|+++|+ +|+.||..|||+||.+|++.+. +++|.++|++|++.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 356788999999999999999995 4999999999999999998764 789999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhc----CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMAD----RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG 389 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~----~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~ 389 (623)
||++||.+|++.|++++|+++|++|.+ +|++|||+||.+|++.|++++|+++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999986 5889999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhc
Q 044791 390 SADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKC 427 (623)
Q Consensus 390 ~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~ 427 (623)
+.|++++|.++|++|.+. |+.|+..||+.|+..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999977 9999999999999999864
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=259.19 Aligned_cols=272 Identities=11% Similarity=0.030 Sum_probs=156.5
Q ss_pred ccccc-----cCCChHHHHHHHHHhcCCCCCCCccC---------------CccccccCCCCCCCCchHHHHHHHHHHHc
Q 044791 200 QWNNQ-----QNQGYPQARNSYQQVSPGHQIPNQLN---------------NVPNNMNQCPAGDQVLPPSVADLARLCQE 259 (623)
Q Consensus 200 ~w~~~-----~~g~~~~A~~lf~~m~~~~~~p~~~~---------------~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 259 (623)
.|+.+ +.|++++|+.+|++|.. ..|+... ....++..+.....+..+++.++.+|++.
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (597)
T 2xpi_A 86 YLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKL 163 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 56554 78899999999988742 2232110 00111111111233556778888888899
Q ss_pred CCHHHHHHHHHcCCCC-------------------CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHH----
Q 044791 260 GKVKEAIELMDKGVKA-------------------DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNN---- 316 (623)
Q Consensus 260 g~~~~A~~l~~~~~~p-------------------d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~---- 316 (623)
|++++|+++|++...- +..+|+.++.+|.+.|++++|+++|++|++.+.. +...+.
T Consensus 164 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~ 242 (597)
T 2xpi_A 164 YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVS 242 (597)
T ss_dssp TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHH
Confidence 9999999888753322 3678889999999999999999999888775421 222222
Q ss_pred ----------------------------------HHHHHHHHcCCHHHHHHHHHHhhc--CChHHHHHHHHHHHHcCChH
Q 044791 317 ----------------------------------KVIEMYGKCGSMTDARRVFDHMAD--RSMDSWHLMINGYADNGLGD 360 (623)
Q Consensus 317 ----------------------------------~Li~~y~k~g~~~~A~~lf~~m~~--~~~~tyn~Li~~~~~~g~~e 360 (623)
.++.+|++.|++++|+++|++|.+ .++.+|+.++.+|.+.|+++
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (597)
T 2xpi_A 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFI 322 (597)
T ss_dssp TTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHH
T ss_pred hhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHH
Confidence 223344455556666666665554 45556666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhh
Q 044791 361 EGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQK 440 (623)
Q Consensus 361 eA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~ 440 (623)
+|+.+|++|.+.+.. +..+++.++.+|.+.|++++|.++|++|.+. ...+..+|+.++.+|.+.|++++|.++|+++
T Consensus 323 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 323 DVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp HHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 666666666654322 3444555555555555555555555555421 1223445555555555555555555555553
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 441 LPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 441 m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
+...| +..+|+.++.+|.+.|++++|.++++.+.++.
T Consensus 400 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 400 STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33222 34455555555555555555555555554443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-26 Score=254.54 Aligned_cols=321 Identities=10% Similarity=-0.050 Sum_probs=268.3
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHcC--CCCC-HHH--------------------------------------HHHH
Q 044791 245 VLPPSVADLARLCQEGKVKEAIELMDKG--VKAD-ASC--------------------------------------FYTL 283 (623)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~pd-~~t--------------------------------------y~~L 283 (623)
...+++.++.+|.+.|++++|+++|++. ..|+ ... |+.+
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence 4568889999999999999999999752 2232 222 3333
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChH
Q 044791 284 FELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGD 360 (623)
Q Consensus 284 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~e 360 (623)
+.+|.+.|++++|+++|++|.+. .++..+|+.++.+|.+.|++++|+++|++|.+ .+..+|+.++.+|.+.|+++
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHH
Confidence 56677889999999999999875 57999999999999999999999999999975 35669999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 361 EGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 361 eA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
+|+.+|++|.+.. ..+..+|+.++.+|.+.|++++|.++|+++.+. .| +..+|+.++.+|.+.|++++|+++|++
T Consensus 357 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 357 KLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM---DPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999653 447889999999999999999999999999853 34 577999999999999999999999999
Q ss_pred hCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchH
Q 044791 440 KLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDD 518 (623)
Q Consensus 440 ~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~ 518 (623)
++...| +..+|..++.+|.+.|++++|.++++.+.++.+. +..+|..+...+.+.|++ +
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~--------~ 492 (597)
T 2xpi_A 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY------------DPLLLNELGVVAFNKSDM--------Q 492 (597)
T ss_dssp HHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHTTCH--------H
T ss_pred HHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHhCCH--------H
Confidence 555555 7799999999999999999999999999987654 356899999999999988 7
Q ss_pred HHHHHHHHHHHC----CcccC--cceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCC----CCh---hHHHhhHhhhcc
Q 044791 519 EKLKALNQMKES----TYVPD--TRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPA----RTP---LRIIKNLRVCGD 585 (623)
Q Consensus 519 eal~~~~~M~~~----Gi~Pd--~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~----~~~---~~i~~~l~~~g~ 585 (623)
+|+++|++|.+. +..|+ ..+|..+. .++.+.|++++|..+++++. ... ..+...+...|+
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~-------~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLG-------HAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH-------HHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHH-------HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 999999998766 77787 34555555 47888999999998887642 121 124455788899
Q ss_pred hhHHHHHHHHHhC
Q 044791 586 CHNAIKIMSRIVG 598 (623)
Q Consensus 586 ~~~a~~l~~~~~~ 598 (623)
.++|.+++.++.+
T Consensus 566 ~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 566 PGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.1e-21 Score=202.73 Aligned_cols=342 Identities=13% Similarity=0.036 Sum_probs=275.8
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc---CCCCCHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK---GVKADASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~---~~~pd~~ty~ 281 (623)
+.|++++|++.|+++.+ ..|+ ....+..+...+...|++++|..+++. ....+..+|.
T Consensus 11 ~~g~~~~A~~~~~~~~~--~~p~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~ 71 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWR--QEPD-----------------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS 71 (388)
T ss_dssp HHTCHHHHHHHHHHHHH--HCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--hCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH
Confidence 68999999999998733 1222 223344666778899999999999964 3345678999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCC
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGL 358 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~ 358 (623)
.+..++.+.|++++|++.|+++++.. +.+..+|..++.+|.+.|++++|++.|+++.+. +...+..+...|...|+
T Consensus 72 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 150 (388)
T 1w3b_A 72 NLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR 150 (388)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC
Confidence 99999999999999999999999863 335778999999999999999999999998753 34478888899999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHH
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFI 437 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf 437 (623)
+++|+.+|+++.+... -+..+|..+..++...|++++|+..|+++.+. .| +...|..+...+...|++++|+..|
T Consensus 151 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 151 LEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL---DPNFLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998632 25789999999999999999999999999853 44 4667888999999999999999999
Q ss_pred HhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccc
Q 044791 438 EQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYR 516 (623)
Q Consensus 438 ~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~ 516 (623)
++++...| +..+|..+..+|...|++++|.+.++.+.++.+.. ..++..+...+.+.|++
T Consensus 227 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~g~~------- 287 (388)
T 1w3b_A 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF------------PDAYCNLANALKEKGSV------- 287 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC------------HHHHHHHHHHHHHHSCH-------
T ss_pred HHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHHcCCH-------
Confidence 99666667 57899999999999999999999999999876543 44788888899999988
Q ss_pred hHHHHHHHHHHHHCCcccCc-ceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCCC-Ch------hHHHhhHhhhcchhH
Q 044791 517 DDEKLKALNQMKESTYVPDT-RYVLHDIDQEAKEQALLYHSERLAIAYGLISTPAR-TP------LRIIKNLRVCGDCHN 588 (623)
Q Consensus 517 ~~eal~~~~~M~~~Gi~Pd~-~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~-~~------~~i~~~l~~~g~~~~ 588 (623)
++|+++|+++.+. .|+. .++.. .+.++...|++++|..++.++.. .| ..+...+...|+.++
T Consensus 288 -~~A~~~~~~al~~--~p~~~~~~~~-------l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 357 (388)
T 1w3b_A 288 -AEAEDCYNTALRL--CPTHADSLNN-------LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp -HHHHHHHHHHHHH--CTTCHHHHHH-------HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred -HHHHHHHHHHHhh--CcccHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 7999999888765 2433 22322 23577788999999988766431 11 123445678899999
Q ss_pred HHHHHHHHhCC
Q 044791 589 AIKIMSRIVGR 599 (623)
Q Consensus 589 a~~l~~~~~~~ 599 (623)
|++.+.++.+.
T Consensus 358 A~~~~~~a~~~ 368 (388)
T 1w3b_A 358 ALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=9e-20 Score=193.13 Aligned_cols=313 Identities=14% Similarity=0.101 Sum_probs=258.5
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCC-HHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKAD-ASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd-~~ty~ 281 (623)
..|++++|...++...+ .. +.....+..+..+|.+.|++++|++.|++ .+.|+ ..+|.
T Consensus 45 ~~~~~~~a~~~~~~a~~--~~-----------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 105 (388)
T 1w3b_A 45 QCRRLDRSAHFSTLAIK--QN-----------------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYI 105 (388)
T ss_dssp HTTCHHHHHHHHHHHHH--HC-----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHh--cC-----------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHH
Confidence 78999999999997733 11 12345677899999999999999999986 34454 45799
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCC
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGL 358 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~ 358 (623)
.++.++.+.|++++|++.|+++++.. +-+...+..+...|...|++++|+++|+++.+. +..+|+.+...+.+.|+
T Consensus 106 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 184 (388)
T 1w3b_A 106 NLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184 (388)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999864 224677888999999999999999999998753 45699999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHH
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFI 437 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf 437 (623)
+++|+..|+++.+.+. -+...|..+...+...|++++|+..|++... +.| +..++..+..+|.+.|++++|++.|
T Consensus 185 ~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 260 (388)
T 1w3b_A 185 IWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALS---LSPNHAVVHGNLACVYYEQGLIDLAIDTY 260 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998642 2567889999999999999999999999884 345 4678899999999999999999999
Q ss_pred HhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccc
Q 044791 438 EQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYR 516 (623)
Q Consensus 438 ~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~ 516 (623)
++++...| +..+|..+..+|...|++++|.+.++.+.++.+. +..++..+...+.+.|++
T Consensus 261 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~------- 321 (388)
T 1w3b_A 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT------------HADSLNNLANIKREQGNI------- 321 (388)
T ss_dssp HHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHTTTCH-------
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc------------cHHHHHHHHHHHHHcCCH-------
Confidence 99666667 4678999999999999999999999999988654 356788888889999988
Q ss_pred hHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCC
Q 044791 517 DDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTP 569 (623)
Q Consensus 517 ~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m 569 (623)
++|+++|+++.+. .|+... .....+.++.+.|++++|...+++.
T Consensus 322 -~~A~~~~~~al~~--~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 322 -EEAVRLYRKALEV--FPEFAA------AHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp -HHHHHHHHHHTTS--CTTCHH------HHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhc--CCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7999999888653 455322 1222335778889999998887653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-18 Score=181.43 Aligned_cols=286 Identities=12% Similarity=0.066 Sum_probs=235.4
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCC--CC-CHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGV--KA-DASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~--~p-d~~ty~ 281 (623)
+.|++++|+.+|+++.. ..| .....+..+..+|...|++++|+++|++.+ .| +..++.
T Consensus 38 ~~g~~~~A~~~~~~~l~--~~p-----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 98 (450)
T 2y4t_A 38 AAGQLADALSQFHAAVD--GDP-----------------DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL 98 (450)
T ss_dssp HTTCHHHHHHHHHHHHH--HCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--hCC-----------------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 89999999999998833 111 124566788899999999999999997632 23 467899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-H---HHHHHH------------HHHHHHcCCHHHHHHHHHHhhc---CC
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGD-L---VLNNKV------------IEMYGKCGSMTDARRVFDHMAD---RS 342 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~---~~y~~L------------i~~y~k~g~~~~A~~lf~~m~~---~~ 342 (623)
.++.+|.+.|++++|+++|+++++. .|+ . .++..| ...|.+.|++++|+.+|+++.+ .+
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 176 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD 176 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999985 344 3 566655 4448999999999999999875 35
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc-cchhhH-
Q 044791 343 MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGT-EHYLGL- 420 (623)
Q Consensus 343 ~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~-~ty~~L- 420 (623)
...|..++.+|.+.|++++|+.+|+++.+.. ..+..++..+..+|...|++++|+.+|+++.. +.|+. ..+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~~ 252 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK---LDQDHKRCFAHYK 252 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCChHHHHHHHH
Confidence 6789999999999999999999999998763 33688999999999999999999999999984 34543 334444
Q ss_pred -----------HHHHHhcCCHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCC
Q 044791 421 -----------VGVLGKCGHLFEAQQFIEQKLPFEPT-----AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPK 484 (623)
Q Consensus 421 -----------i~~~~k~g~~e~A~~lf~~~m~~~Pd-----~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~ 484 (623)
..+|.+.|++++|+++|++++...|+ ...|..+..++.+.|++++|...++.+.++.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~----- 327 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD----- 327 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----
Confidence 78899999999999999996666676 457888999999999999999999999887654
Q ss_pred CCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcc
Q 044791 485 KIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTR 537 (623)
Q Consensus 485 ~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~ 537 (623)
+...+..+..+|...|++ ++|++.|++..+ +.|+..
T Consensus 328 -------~~~~~~~l~~~~~~~~~~--------~~A~~~~~~al~--~~p~~~ 363 (450)
T 2y4t_A 328 -------NVNALKDRAEAYLIEEMY--------DEAIQDYETAQE--HNENDQ 363 (450)
T ss_dssp -------CHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHT--TSSSCH
T ss_pred -------cHHHHHHHHHHHHHhcCH--------HHHHHHHHHHHH--hCcchH
Confidence 356888889999999988 799999988876 456643
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-18 Score=181.85 Aligned_cols=297 Identities=10% Similarity=0.017 Sum_probs=238.2
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHcC---CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044791 244 QVLPPSVADLARLCQEGKVKEAIELMDKG---VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIE 320 (623)
Q Consensus 244 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~---~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~ 320 (623)
.....+..+...|.+.|++++|+++|++. ...+..+|..++.++...|++++|+++|+++++.+ +.+..++..++.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34556778889999999999999999753 23467889999999999999999999999999975 336899999999
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCh------HHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 044791 321 MYGKCGSMTDARRVFDHMADRSM------DSWHLM------------INGYADNGLGDEGLQLFEQMRKLGLQPNEQTFL 382 (623)
Q Consensus 321 ~y~k~g~~~~A~~lf~~m~~~~~------~tyn~L------------i~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~ 382 (623)
+|.+.|++++|+++|+++.+.+. ..|..+ ...+.+.|++++|+.+|+++.+.. ..+..++.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 99999999999999999986433 555555 444999999999999999999863 23778899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHH--------
Q 044791 383 AVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWEAL-------- 453 (623)
Q Consensus 383 ~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~~L-------- 453 (623)
.+..+|.+.|++++|+++|+++.+. ...+..+|..++.+|...|++++|+++|++++...|+. ..+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999854 22357889999999999999999999999966656644 445444
Q ss_pred ----HHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHH
Q 044791 454 ----RNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKE 529 (623)
Q Consensus 454 ----i~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~ 529 (623)
...|...|++++|...++.+.++.+.... .....+..+...+.+.|++ ++|+++++++.+
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~a~~ 323 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAE--------YTVRSKERICHCFSKDEKP--------VEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH--------HHHHHHHHHHHHHHTTTCH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH--------HHHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHH
Confidence 78899999999999999999987655311 1134677888889999988 699999988765
Q ss_pred CCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccC
Q 044791 530 STYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLIST 568 (623)
Q Consensus 530 ~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~ 568 (623)
. .|+... .....+.++...|++++|...++.
T Consensus 324 ~--~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 324 M--EPDNVN------ALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp H--CTTCHH------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred h--CcccHH------HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4 344321 122233567778888888877664
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-19 Score=204.97 Aligned_cols=158 Identities=16% Similarity=0.106 Sum_probs=132.7
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----CChHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQ---STIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD----RSMDSWHL 348 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~---~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~----~~~~tyn~ 348 (623)
-..|||+||++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|+++|++|.+ +|++|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 347899999999999999999999988764 58999999999999999999999999999999975 79999999
Q ss_pred HHHHHHHcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC------ccchhhHH
Q 044791 349 MINGYADNGLG-DEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG------TEHYLGLV 421 (623)
Q Consensus 349 Li~~~~~~g~~-eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~------~~ty~~Li 421 (623)
||.+||+.|+. ++|.++|++|.+.|+.||.+||+++|.++.+. .+++.++++.. ++.|+ ..+...|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P--~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKP--TFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCC--CCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCc--ccCCCCCCcccccchHHHH
Confidence 99999999985 78999999999999999999999999877664 44444444432 44443 55666778
Q ss_pred HHHHhcC---------CHHHHHHHHHh
Q 044791 422 GVLGKCG---------HLFEAQQFIEQ 439 (623)
Q Consensus 422 ~~~~k~g---------~~e~A~~lf~~ 439 (623)
+.|.+.+ ..++-.++|++
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHH
Confidence 8888766 35777777766
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-17 Score=178.31 Aligned_cols=348 Identities=12% Similarity=-0.037 Sum_probs=267.0
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC--CCC-CHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG--VKA-DASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~p-d~~ty~ 281 (623)
..|++++|+..|+++.... | +...+..+..+|.+.|++++|++.|++. ..| +..+|.
T Consensus 18 ~~g~~~~A~~~~~~al~~~--p------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 77 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK--E------------------DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLL 77 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC--C------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC--c------------------cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHH
Confidence 6899999999999984411 2 2345668889999999999999999752 234 457899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCC---------------------------------------------------
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRG--------------------------------------------------- 310 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p--------------------------------------------------- 310 (623)
.++.++.+.|++++|+..|+++.+.+...
T Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (514)
T 2gw1_A 78 RRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN 157 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC
Confidence 99999999999999999999998764210
Q ss_pred ---------------------------CHHHHHHHHHHHHH---cCCHHHHHHHHHHhhc-----C------------Ch
Q 044791 311 ---------------------------DLVLNNKVIEMYGK---CGSMTDARRVFDHMAD-----R------------SM 343 (623)
Q Consensus 311 ---------------------------d~~~y~~Li~~y~k---~g~~~~A~~lf~~m~~-----~------------~~ 343 (623)
+...+..+...+.. .|++++|+.+|+++.+ . +.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (514)
T 2gw1_A 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237 (514)
T ss_dssp CCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred CchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence 13333333443443 8999999999998876 2 23
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHH
Q 044791 344 DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGV 423 (623)
Q Consensus 344 ~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~ 423 (623)
.+|..+...+...|++++|+.+|+++.+.... ..++..+..++...|++++|...++.+... ...+..+|..+..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHH
Confidence 48899999999999999999999999987544 888999999999999999999999999842 22356788899999
Q ss_pred HHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhh
Q 044791 424 LGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDG 502 (623)
Q Consensus 424 ~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~ 502 (623)
|...|++++|+.+|++++...| +..+|..+...|...|++++|...++.+.+..+.. ...+..+...
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~la~~ 381 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA------------PEVPNFFAEI 381 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC------------SHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC------------HHHHHHHHHH
Confidence 9999999999999999665555 56788999999999999999999999998876553 3467777888
Q ss_pred cCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHH---HhHHHHHHhcccCC----CCChh-
Q 044791 503 KSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYH---SERLAIAYGLISTP----ARTPL- 574 (623)
Q Consensus 503 ~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~---~g~l~~A~~ll~~m----~~~~~- 574 (623)
+.+.|++ ++|+.+|+++.+. .|+.......+......+.++.. .|++++|...+... +....
T Consensus 382 ~~~~~~~--------~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 451 (514)
T 2gw1_A 382 LTDKNDF--------DKALKQYDLAIEL--ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451 (514)
T ss_dssp HHHTTCH--------HHHHHHHHHHHHH--HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHCCCH--------HHHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHH
Confidence 8888988 6999999777653 23332211112233344456777 89999998877653 22221
Q ss_pred --HHHhhHhhhcchhHHHHHHHHHhC
Q 044791 575 --RIIKNLRVCGDCHNAIKIMSRIVG 598 (623)
Q Consensus 575 --~i~~~l~~~g~~~~a~~l~~~~~~ 598 (623)
.+...+...|+.++|.+.+.++.+
T Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 452 KIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 233456778999999999888764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-19 Score=201.88 Aligned_cols=149 Identities=15% Similarity=0.147 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhh-------cCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMA-------DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLA 383 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~-------~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~ 383 (623)
-..|||+||++||++|++++|.++|++|. .+|++|||+||+|||+.|++++|+++|++|++.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35799999999999999999999998875 36999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCC----CCHHHHHHHHHHHH
Q 044791 384 VFSACGSADA-IEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE----PTAEFWEALRNYAR 458 (623)
Q Consensus 384 li~a~~~~g~-~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~----Pd~~ty~~Li~a~~ 458 (623)
||.++|+.|+ .++|.++|++|.++ |+.||..+|++++.++.+.+-++.+.++..+ +... |.+.+...|.+.|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~-f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPT-FSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC-CCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcc-cCCCCCCcccccchHHHHHHHc
Confidence 9999999998 58999999999988 9999999999999888877655555555433 3311 12445556666666
Q ss_pred HcC
Q 044791 459 IHG 461 (623)
Q Consensus 459 ~~g 461 (623)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 555
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-16 Score=172.28 Aligned_cols=350 Identities=11% Similarity=0.048 Sum_probs=257.1
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC--CCC-CHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG--VKA-DASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~p-d~~ty~ 281 (623)
+.|++++|++.|+++.. ..|+ ....+..+..+|.+.|++++|++.|++. +.| +..++.
T Consensus 37 ~~g~~~~A~~~~~~al~--~~p~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 97 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIE--LDPN-----------------EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALL 97 (537)
T ss_dssp HTTCCC-CHHHHHHHHH--HCTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhccHHHHHHHHHHHHh--hCCC-----------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHH
Confidence 89999999999998843 1121 2356668888999999999999999763 234 567899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCC------------------------------------CCCHH------------
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTI------------------------------------RGDLV------------ 313 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~------------------------------------~pd~~------------ 313 (623)
.+..++...|++++|++.|+.+....- .|+..
T Consensus 98 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 98 RRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999999999963311100 01111
Q ss_pred ------------------HHHHHHHHHHH--------cCCHHHHHHHHHHhhcCC----------hHHHHHHHHHHHHcC
Q 044791 314 ------------------LNNKVIEMYGK--------CGSMTDARRVFDHMADRS----------MDSWHLMINGYADNG 357 (623)
Q Consensus 314 ------------------~y~~Li~~y~k--------~g~~~~A~~lf~~m~~~~----------~~tyn~Li~~~~~~g 357 (623)
....+...+.. .|++++|+.+|+++.+.+ ..+|..+...+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 11222222111 247899999999987643 226788888899999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHH
Q 044791 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFI 437 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf 437 (623)
++++|+.+|+++.+. .|+..++..+...+...|++++|.++|+++... . .-+..+|..+...|...|++++|++.|
T Consensus 258 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 258 NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL-N-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc-C-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999986 566888999999999999999999999999854 1 225678899999999999999999999
Q ss_pred HhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccc
Q 044791 438 EQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYR 516 (623)
Q Consensus 438 ~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~ 516 (623)
++++...| +...|..+...|...|++++|...++.+.+..+.. ...+..+...+...|++
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~------- 394 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL------------PEVPTFFAEILTDRGDF------- 394 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------THHHHHHHHHHHHTTCH-------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHhCCH-------
Confidence 99665555 46789999999999999999999999999987654 34677777888888887
Q ss_pred hHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHH----------hHHHHHHhcccCC----CCChh---HHHhh
Q 044791 517 DDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHS----------ERLAIAYGLISTP----ARTPL---RIIKN 579 (623)
Q Consensus 517 ~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~----------g~l~~A~~ll~~m----~~~~~---~i~~~ 579 (623)
++|++.|+++.+.. |+.......+......+.++... |++++|...+... +.... .+-..
T Consensus 395 -~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 471 (537)
T 3fp2_A 395 -DTAIKQYDIAKRLE--EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471 (537)
T ss_dssp -HHHHHHHHHHHHHH--HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcC--CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 69999997776543 33333333332233334456666 9999998887653 22221 23345
Q ss_pred HhhhcchhHHHHHHHHHhCC
Q 044791 580 LRVCGDCHNAIKIMSRIVGR 599 (623)
Q Consensus 580 l~~~g~~~~a~~l~~~~~~~ 599 (623)
+...|+..+|.+.+.++.+.
T Consensus 472 ~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 472 KLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh
Confidence 67779999999998887643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.9e-16 Score=167.35 Aligned_cols=319 Identities=11% Similarity=0.025 Sum_probs=249.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKG--VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~--~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~ 325 (623)
.+..+...+.+.|++++|+.+|++. ..||..+|..+..++.+.|++++|++.++++++.+ +.+..+|..++.+|.+.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHH
Confidence 3446677899999999999999762 34899999999999999999999999999999875 34678999999999999
Q ss_pred CCHHHHHHHHHHhhcCC---------------------------------------------------------------
Q 044791 326 GSMTDARRVFDHMADRS--------------------------------------------------------------- 342 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~~--------------------------------------------------------------- 342 (623)
|++++|+..|+++.+.+
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 99999999999886432
Q ss_pred -------------------hHHHHHHHHHHHH---cCChHHHHHHHHHHHH-----cCCCC--------CHHHHHHHHHH
Q 044791 343 -------------------MDSWHLMINGYAD---NGLGDEGLQLFEQMRK-----LGLQP--------NEQTFLAVFSA 387 (623)
Q Consensus 343 -------------------~~tyn~Li~~~~~---~g~~eeA~~l~~eM~~-----~g~~P--------d~~ty~~li~a 387 (623)
...+..+...+.. .|++++|+.+|+++.+ ..-.| +..++..+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 1223333333333 8999999999999998 32122 35678888999
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHH
Q 044791 388 CGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLE 466 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A 466 (623)
+...|++++|..+|+.+... . |+..+|..+..+|...|++++|+++|++++...| +..+|..+...|...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIEL-F--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhh-C--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999865 3 3477888999999999999999999999666555 567899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHH
Q 044791 467 DHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQE 546 (623)
Q Consensus 467 ~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~ 546 (623)
...++.+.++.+.. ...+..+...+...|++ ++|+.+|+++.+. .|+.. ...
T Consensus 324 ~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~~~--~~~~~------~~~ 375 (514)
T 2gw1_A 324 GKDFDKAKELDPEN------------IFPYIQLACLAYRENKF--------DDCETLFSEAKRK--FPEAP------EVP 375 (514)
T ss_dssp HHHHHHHHHTCSSC------------SHHHHHHHHHTTTTTCH--------HHHHHHHHHHHHH--STTCS------HHH
T ss_pred HHHHHHHHHhChhh------------HHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHH--cccCH------HHH
Confidence 99999999876653 34777888889999988 6999999887654 23322 112
Q ss_pred HHHHHHHHHHhHHHHHHhcccCCC----CC---------hhHHHhhHhh---hcchhHHHHHHHHHhC
Q 044791 547 AKEQALLYHSERLAIAYGLISTPA----RT---------PLRIIKNLRV---CGDCHNAIKIMSRIVG 598 (623)
Q Consensus 547 ~k~~~~~~~~g~l~~A~~ll~~m~----~~---------~~~i~~~l~~---~g~~~~a~~l~~~~~~ 598 (623)
...+.++...|+.++|...+.... .. ...+...+.. .|+..+|.+.+..+.+
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 233356777888888887765431 11 1123344566 8999999999988764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-15 Score=156.61 Aligned_cols=252 Identities=13% Similarity=0.092 Sum_probs=206.5
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADASCFYTLF 284 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll 284 (623)
..|.|.+|++.++.+.. ..|+. .......+..+|...|++++|+..++..-.|+..++..+.
T Consensus 11 ~~g~y~~ai~~~~~~~~--~~p~~----------------~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la 72 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKP--SSPER----------------DVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFA 72 (291)
T ss_dssp HTTCHHHHHHHHHHSCC--CSHHH----------------HHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc--CCchh----------------hHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHH
Confidence 57999999999997733 11111 0112235678999999999999988776566778899999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHH
Q 044791 285 ELCGNPKWYENAKKVHDYFLQSTIRG-DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGL 363 (623)
Q Consensus 285 ~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~ 363 (623)
..+...++.++|++.+++++..++.| +...+..+..+|...|++++|+++|++ ..+...+..++..|.+.|++++|+
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999887555 567778888999999999999999998 567779999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhh
Q 044791 364 QLFEQMRKLGLQPNEQTF---LAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQK 440 (623)
Q Consensus 364 ~l~~eM~~~g~~Pd~~ty---~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~ 440 (623)
..|+++.+.. |+...+ ..++..+...|++++|+.+|+++.+. ...+...|+.+..+|.+.|++++|++.|+++
T Consensus 151 ~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 151 KELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999874 554322 22334445569999999999999965 3347788999999999999999999999997
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCChhH-HHHHHHHHHhcCCCC
Q 044791 441 LPFEP-TAEFWEALRNYARIHGDIDL-EDHAEELMVDLDPSK 480 (623)
Q Consensus 441 m~~~P-d~~ty~~Li~a~~~~g~~~~-A~~~~~~~~~m~~~~ 480 (623)
+...| +..++..++..+...|+.++ +.+.++.+.++.|++
T Consensus 227 l~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 227 LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 77667 66889999999999999875 578889999988775
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.71 E-value=9.6e-16 Score=159.91 Aligned_cols=291 Identities=12% Similarity=-0.004 Sum_probs=219.5
Q ss_pred CCChHHHHH-HHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC--C-CCCHHHHH
Q 044791 206 NQGYPQARN-SYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG--V-KADASCFY 281 (623)
Q Consensus 206 ~g~~~~A~~-lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~-~pd~~ty~ 281 (623)
.|+|++|++ .|++... ..|+.. ......+..+...|.+.|++++|+.+|++. . ..+..+|.
T Consensus 38 ~~~~~~a~~~~~~~a~~--~~~~~~-------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 102 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQ--FEEENP-------------LRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQ 102 (368)
T ss_dssp --------CHHHHCCCC--CCSSCT-------------TTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHHhhhhhHHHh--cCCCCc-------------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 577888887 7775532 111110 012344567888999999999999999762 2 33567899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH---HHHH----------
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD---SWHL---------- 348 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~---tyn~---------- 348 (623)
.+..++.+.|++++|+++|+++++.. +.+..++..+..+|.+.|++++|+++|+++.+.+.. .+..
T Consensus 103 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (368)
T 1fch_A 103 YLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 181 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999875 347899999999999999999999999998754322 2221
Q ss_pred -----HHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHH
Q 044791 349 -----MINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLV 421 (623)
Q Consensus 349 -----Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li 421 (623)
.+..+...|++++|+.+|+++.+..... +..++..+...|...|++++|+.+|+++... .| +..+|..+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~ 258 (368)
T 1fch_A 182 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLG 258 (368)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred cHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHH
Confidence 2444449999999999999999864322 5889999999999999999999999999854 34 467899999
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHh
Q 044791 422 GVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISIL 500 (623)
Q Consensus 422 ~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li 500 (623)
.+|.+.|++++|+++|++++...| +..+|..+..+|...|++++|...++.+.++.+....+.. .........+..+.
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~~~l~ 337 (368)
T 1fch_A 259 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG-EGGAMSENIWSTLR 337 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-------CCCCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc-cccchhhHHHHHHH
Confidence 999999999999999999666555 5688999999999999999999999999998776532100 00012256788888
Q ss_pred hhcCccccccCCcccchHHHHHHH
Q 044791 501 DGKSRLVEFRNPTLYRDDEKLKAL 524 (623)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~eal~~~ 524 (623)
.++...|++ ++|..++
T Consensus 338 ~~~~~~g~~--------~~A~~~~ 353 (368)
T 1fch_A 338 LALSMLGQS--------DAYGAAD 353 (368)
T ss_dssp HHHHHHTCG--------GGHHHHH
T ss_pred HHHHHhCCh--------HhHHHhH
Confidence 889999987 4777665
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.7e-16 Score=161.65 Aligned_cols=262 Identities=12% Similarity=0.029 Sum_probs=206.0
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHcCC---CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 245 VLPPSVADLARLCQEGKVKEAIELMDKGV---KADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEM 321 (623)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~---~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~ 321 (623)
....+..+...+.+.|++++|+++|++.+ .-+..+|..+..++...|++++|+++|+++++.. +.+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34557788999999999999999997632 3367889999999999999999999999999864 3468999999999
Q ss_pred HHHcCCHHHHHHHHHHhhcCChH-------------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 044791 322 YGKCGSMTDARRVFDHMADRSMD-------------SWHLMINGYADNGLGDEGLQLFEQMRKLGLQ-PNEQTFLAVFSA 387 (623)
Q Consensus 322 y~k~g~~~~A~~lf~~m~~~~~~-------------tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~-Pd~~ty~~li~a 387 (623)
|.+.|++++|+.+|+++.+.+.. .+..+...+...|++++|+.+|+++.+.... .+..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 99999999999999998764322 3445688899999999999999999987432 268899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhHH
Q 044791 388 CGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-AEFWEALRNYARIHGDIDLE 466 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~~~~A 466 (623)
|...|++++|+.+|+++.+. ...+..+|..+..+|.+.|++++|+++|++++...|+ ..+|..+..+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999854 2235778999999999999999999999997766664 78899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccc
Q 044791 467 DHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEF 509 (623)
Q Consensus 467 ~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~ 509 (623)
...++...++.+....+........+...+..+-.++...|+.
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 9999999998877544211111112356677777777777765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-15 Score=154.50 Aligned_cols=293 Identities=10% Similarity=0.013 Sum_probs=229.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC--CC-CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKG--VK-ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~--~~-pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
.+..+...+...|++++|+++|++. .. -+..++..+..++...|++++|++.++++++.. +-+..+|..+..+|.+
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH
Confidence 4557788899999999999999752 23 356789999999999999999999999999864 3367899999999999
Q ss_pred cCCHHHHHHHHHHhhcCCh---H---HHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044791 325 CGSMTDARRVFDHMADRSM---D---SWHLM------------INGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFS 386 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~~~~---~---tyn~L------------i~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~ 386 (623)
.|++++|+.+|+++.+.+. . .+..+ ...+...|++++|+.+|+++.+... .+..++..+..
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 162 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAE 162 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 9999999999999976544 2 44444 5789999999999999999998643 36788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHH------------HH
Q 044791 387 ACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWE------------AL 453 (623)
Q Consensus 387 a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~------------~L 453 (623)
.+...|++++|...++++... ...+..++..+...|...|++++|.+.|++++...|+. ..+. .+
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999843 22367788899999999999999999999966655543 3333 23
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcc
Q 044791 454 RNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYV 533 (623)
Q Consensus 454 i~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~ 533 (623)
...+...|++++|...++.+.+..+.... .....+..+-..+...|++ ++|+++|++..+. .
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------~~~~~~~~la~~~~~~~~~--------~~A~~~~~~~~~~--~ 302 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTEPSVAE--------YTVRSKERICHCFSKDEKP--------VEAIRICSEVLQM--E 302 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSSHH--------HHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHHH--C
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchH--------HHHHHHHHHHHHHHHccCH--------HHHHHHHHHHHHh--C
Confidence 56688999999999999999998765321 1113344566777888887 6999999777664 3
Q ss_pred cCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccC
Q 044791 534 PDTRYVLHDIDQEAKEQALLYHSERLAIAYGLIST 568 (623)
Q Consensus 534 Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~ 568 (623)
|+... .....+.++...|+.++|...+++
T Consensus 303 ~~~~~------~~~~~~~~~~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 303 PDNVN------ALKDRAEAYLIEEMYDEAIQDYEA 331 (359)
T ss_dssp TTCHH------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccHH------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 54322 222333577788899998887765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.5e-15 Score=151.50 Aligned_cols=285 Identities=12% Similarity=0.052 Sum_probs=228.3
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC--CCC-CHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG--VKA-DASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~p-d~~ty~ 281 (623)
..|++++|++.|+++.. ..|+ ....+..+...|...|++++|+..|++. ..| +...|.
T Consensus 15 ~~g~~~~A~~~~~~~l~--~~p~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 75 (359)
T 3ieg_A 15 AAGQLADALSQFHAAVD--GDPD-----------------NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARL 75 (359)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHh--hCcc-----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHH
Confidence 78999999999998833 1111 2345667888999999999999999763 234 567899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCC----CHHHHHHH------------HHHHHHcCCHHHHHHHHHHhhc---CC
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRG----DLVLNNKV------------IEMYGKCGSMTDARRVFDHMAD---RS 342 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p----d~~~y~~L------------i~~y~k~g~~~~A~~lf~~m~~---~~ 342 (623)
.+..++...|++++|+++|+++.+. .| +...+..+ ...+...|++++|+++|+++.+ .+
T Consensus 76 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 153 (359)
T 3ieg_A 76 QRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD 153 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999885 44 44555555 5889999999999999999865 35
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccchh---
Q 044791 343 MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEHYL--- 418 (623)
Q Consensus 343 ~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ty~--- 418 (623)
...|..+...+...|++++|+..|+++.+.. ..+..++..+...+...|++++|...|+.+.+. .|+ ...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~ 229 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYK 229 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHH
Confidence 6689999999999999999999999999763 336788999999999999999999999999854 333 22222
Q ss_pred ---------hHHHHHHhcCCHHHHHHHHHhhCCCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCC
Q 044791 419 ---------GLVGVLGKCGHLFEAQQFIEQKLPFEPTA-----EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPK 484 (623)
Q Consensus 419 ---------~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-----~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~ 484 (623)
.+...+.+.|++++|+++|++++...|+. ..|..+...|...|++++|...++...++.+..
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---- 305 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN---- 305 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc----
Confidence 23667899999999999999966655653 235567789999999999999999999986543
Q ss_pred CCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCc
Q 044791 485 KIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDT 536 (623)
Q Consensus 485 ~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~ 536 (623)
...+..+-..+.+.|++ ++|++.|++..+. .|+.
T Consensus 306 --------~~~~~~~~~~~~~~g~~--------~~A~~~~~~a~~~--~p~~ 339 (359)
T 3ieg_A 306 --------VNALKDRAEAYLIEEMY--------DEAIQDYEAAQEH--NEND 339 (359)
T ss_dssp --------HHHHHHHHHHHHHTTCH--------HHHHHHHHHHHTT--CTTC
T ss_pred --------HHHHHHHHHHHHHcCCH--------HHHHHHHHHHHhc--CCCC
Confidence 45777888888889988 7999999877654 3553
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.8e-15 Score=150.40 Aligned_cols=254 Identities=12% Similarity=-0.012 Sum_probs=210.1
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC--CCC-CHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG--VKA-DASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~p-d~~ty~ 281 (623)
..|++++|+++|+++.. ..|. ....+..++.++...|++++|+.++++. ..| +..+|.
T Consensus 34 ~~g~~~~A~~~~~~~l~--~~p~-----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 94 (330)
T 3hym_B 34 YNCDFKMCYKLTSVVME--KDPF-----------------HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWF 94 (330)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTT-----------------CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HcCCHHHHHHHHHHHHH--cCCC-----------------ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH
Confidence 78999999999998843 1122 1123346778889999999999999752 223 567899
Q ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcC
Q 044791 282 TLFELCGNPK-WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNG 357 (623)
Q Consensus 282 ~Ll~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g 357 (623)
.+...+...| ++++|+++|+++++.. +.+..+|..+..+|...|++++|++.|+++.+. +...+..+...|...|
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999998864 335788999999999999999999999988753 4568888999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-------CCCCccchhhHHHHHHhcCCH
Q 044791 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFG-------ISPGTEHYLGLVGVLGKCGHL 430 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g-------~~p~~~ty~~Li~~~~k~g~~ 430 (623)
++++|+.+|+++.+.. .-+..++..+...+...|++++|..+|+++..... ......+|..+..+|.+.|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999764 33678899999999999999999999999886421 123456888999999999999
Q ss_pred HHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 431 FEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 431 e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
++|+++|++++...| +...|..+...|...|++++|.+.++...++.+.
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 999999999665455 5688999999999999999999999988877654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-16 Score=161.58 Aligned_cols=253 Identities=11% Similarity=0.011 Sum_probs=196.9
Q ss_pred HHHHcCCHHHHHH-HHHcCCC--C-----CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044791 255 RLCQEGKVKEAIE-LMDKGVK--A-----DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG 326 (623)
Q Consensus 255 ~~~~~g~~~~A~~-l~~~~~~--p-----d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g 326 (623)
++...|++++|++ .|++.+. | +...+..+...+.+.|++++|+.+|+++++.. +.+..+|..+..+|.+.|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3556789999999 8876433 2 24568889999999999999999999999874 347889999999999999
Q ss_pred CHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-H--------------HHHHH
Q 044791 327 SMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFL-A--------------VFSAC 388 (623)
Q Consensus 327 ~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~-~--------------li~a~ 388 (623)
++++|++.|+++.+ .+..+|..+...|...|++++|+..|+++.+..... ...+. . .+..+
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999998865 356699999999999999999999999999864221 11111 1 23444
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHH
Q 044791 389 GSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLED 467 (623)
Q Consensus 389 ~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~ 467 (623)
...|++++|+.+|+++.+...-.++..++..+..+|.+.|++++|+++|++++...| +..+|..+...|...|++++|.
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 488999999999999986522222577889999999999999999999999666555 5789999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHH
Q 044791 468 HAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKE 529 (623)
Q Consensus 468 ~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~ 529 (623)
..++.+.++.+.. ...+..+...+.+.|++ ++|+++|++..+
T Consensus 272 ~~~~~al~~~~~~------------~~~~~~l~~~~~~~g~~--------~~A~~~~~~al~ 313 (368)
T 1fch_A 272 AAYRRALELQPGY------------IRSRYNLGISCINLGAH--------REAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHCTTC------------HHHHHHHHHHHHHHTCH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCc------------HHHHHHHHHHHHHCCCH--------HHHHHHHHHHHH
Confidence 9999999886543 45778888889999988 699999977654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.8e-15 Score=150.36 Aligned_cols=264 Identities=15% Similarity=0.044 Sum_probs=217.9
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHcCC--CC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 246 LPPSVADLARLCQEGKVKEAIELMDKGV--KA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMY 322 (623)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~A~~l~~~~~--~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y 322 (623)
...+..+...+...|++++|+++|++.+ .| +..++..++.++...|++++|..+++++++.. +.+..+|..+...|
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 3455677888999999999999997522 22 34567778888899999999999999999864 33678899999999
Q ss_pred HHcC-CHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044791 323 GKCG-SMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAF 398 (623)
Q Consensus 323 ~k~g-~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~ 398 (623)
...| ++++|++.|+++.+. +...|..+...+...|++++|+..|+++.+.... +..++..+...|...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHH
Confidence 9999 999999999998753 4568999999999999999999999999986432 4567777999999999999999
Q ss_pred HHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCC----------CCCHHHHHHHHHHHHHcCChhHHH
Q 044791 399 IHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPF----------EPTAEFWEALRNYARIHGDIDLED 467 (623)
Q Consensus 399 ~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~----------~Pd~~ty~~Li~a~~~~g~~~~A~ 467 (623)
++|+++.+ ..| +..++..+...|...|++++|+.+|++++.. ..+..+|..+...|...|++++|.
T Consensus 180 ~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 180 RFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999984 334 5678889999999999999999999984432 234578999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCc
Q 044791 468 HAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDT 536 (623)
Q Consensus 468 ~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~ 536 (623)
..++...++.+.. ...+..+-..+.+.|++ ++|+++|++..+ +.|+.
T Consensus 257 ~~~~~a~~~~~~~------------~~~~~~la~~~~~~g~~--------~~A~~~~~~al~--~~p~~ 303 (330)
T 3hym_B 257 DYHRQALVLIPQN------------ASTYSAIGYIHSLMGNF--------ENAVDYFHTALG--LRRDD 303 (330)
T ss_dssp HHHHHHHHHSTTC------------SHHHHHHHHHHHHHTCH--------HHHHHHHHTTTT--TCSCC
T ss_pred HHHHHHHhhCccc------------hHHHHHHHHHHHHhccH--------HHHHHHHHHHHc--cCCCc
Confidence 9999999987653 34777888888889988 699999976643 34553
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.66 E-value=6e-17 Score=172.86 Aligned_cols=284 Identities=14% Similarity=0.073 Sum_probs=135.4
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADASCFYTLF 284 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll 284 (623)
..|++++|.+.++++.. |+ +|..|+.++.+.|++++|++.|.+ .+|..+|..++
T Consensus 15 ~~~~ld~A~~fae~~~~----~~--------------------vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~ 68 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE----PA--------------------VWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVV 68 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC----hH--------------------HHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHH
Confidence 46788999998887722 21 333788999999999999999976 36788999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHH
Q 044791 285 ELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQ 364 (623)
Q Consensus 285 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~ 364 (623)
.++...|++++|+++++..++. .++..+.+.|+.+|++.|+++++.++|+ .++..+|+.++..|...|++++|..
T Consensus 69 ~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~ 143 (449)
T 1b89_A 69 QAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKL 143 (449)
T ss_dssp ------------------------------------------CHHHHTTTTT---CC----------------CTTTHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988877774 4567889999999999999999998885 4777899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCC
Q 044791 365 LFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE 444 (623)
Q Consensus 365 l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~ 444 (623)
+|..+ ..|..|+.++.+.|++++|.+.+..+. ++.+|..++.+|+..|+++.|..+... +.+.
T Consensus 144 ~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~-------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ 206 (449)
T 1b89_A 144 LYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLH-IVVH 206 (449)
T ss_dssp HHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTC
T ss_pred HHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC-------CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhC
Confidence 99987 379999999999999999999998872 678999999999999999999887777 5555
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHH
Q 044791 445 PTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKAL 524 (623)
Q Consensus 445 Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~ 524 (623)
|+. ...|+..|.+.|++++|...++....+++.... ..|...++.+..+-++. .|.+++|
T Consensus 207 ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~----------~ftel~il~~ky~p~k~--------~ehl~~~ 266 (449)
T 1b89_A 207 ADE--LEELINYYQDRGYFEELITMLEAALGLERAHMG----------MFTELAILYSKFKPQKM--------REHLELF 266 (449)
T ss_dssp HHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHH----------HHHHHHHHHHTTCHHHH--------HHHHHHH
T ss_pred Hhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHH----------HHHHHHHHHHhcCHHHH--------HHHHHHH
Confidence 544 446999999999999999999999888865543 56666777777777765 4777777
Q ss_pred HHHHHCCccc------CcceeeeccCHHHHHHHHHHHHhHHHHHHhc
Q 044791 525 NQMKESTYVP------DTRYVLHDIDQEAKEQALLYHSERLAIAYGL 565 (623)
Q Consensus 525 ~~M~~~Gi~P------d~~t~~~li~~~~k~~~~~~~~g~l~~A~~l 565 (623)
. ....+.| +...|..++ -++.+.+.++.|...
T Consensus 267 ~--~~ini~k~~~~~~~~~~w~e~~-------~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 267 W--SRVNIPKVLRAAEQAHLWAELV-------FLYDKYEEYDNAIIT 304 (449)
T ss_dssp S--TTSCHHHHHHHHHTTTCHHHHH-------HHHHHTTCHHHHHHH
T ss_pred H--HHhcCcHHHHHHHHHHHHHHHH-------HHHHhhchHHHHHHH
Confidence 2 2223333 223343333 367788888888753
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-15 Score=157.00 Aligned_cols=233 Identities=9% Similarity=-0.001 Sum_probs=189.6
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMING 352 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~ 352 (623)
+...+..+...+.+.|++++|+++|+++++.. +.+..+|..+..+|.+.|++++|+.+|+++.+ .+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568889999999999999999999999874 34789999999999999999999999999875 356699999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQ---------PNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGV 423 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~---------Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~ 423 (623)
|...|++++|+.+|+++.+.... ....++..+...+...|++++|+.+|+++.....-..+..++..+..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 99999999999999999875211 012344556888999999999999999999653322357789999999
Q ss_pred HHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhh
Q 044791 424 LGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDG 502 (623)
Q Consensus 424 ~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~ 502 (623)
|.+.|++++|+++|++++...| +..+|..+..+|...|++++|...++...++.+.. ..++..+-..
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~ 290 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF------------IRSRYNLGIS 290 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------------hHHHHHHHHH
Confidence 9999999999999999666555 57899999999999999999999999999986553 5578888888
Q ss_pred cCccccccCCcccchHHHHHHHHHHHH
Q 044791 503 KSRLVEFRNPTLYRDDEKLKALNQMKE 529 (623)
Q Consensus 503 ~~~~~~~~~~~~~~~~eal~~~~~M~~ 529 (623)
+.+.|++ ++|+++|++..+
T Consensus 291 ~~~~g~~--------~~A~~~~~~al~ 309 (365)
T 4eqf_A 291 CINLGAY--------REAVSNFLTALS 309 (365)
T ss_dssp HHHHTCC--------HHHHHHHHHHHH
T ss_pred HHHCCCH--------HHHHHHHHHHHH
Confidence 9999988 699999977654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-14 Score=147.08 Aligned_cols=267 Identities=8% Similarity=-0.070 Sum_probs=211.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcC---CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKG---VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG 323 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~---~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~ 323 (623)
..+..+...+...|++++|+.+|++. ..-+..++..+..++...|++++|.++++++++.. +.+..++..+..+|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34557788899999999999999752 22366789999999999999999999999999874 347889999999999
Q ss_pred HcCCHHHHHHHHHHhhcCChH---HHHHH--------------HH-HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044791 324 KCGSMTDARRVFDHMADRSMD---SWHLM--------------IN-GYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVF 385 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~~~~~---tyn~L--------------i~-~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li 385 (623)
+.|++++|++.|+++.+.+.. .+..+ .. .+...|++++|+.+|+++.+... .+..++..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 999999999999998764322 33333 22 37788999999999999998743 3778999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChh
Q 044791 386 SACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDID 464 (623)
Q Consensus 386 ~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~ 464 (623)
..+...|++++|.++++++... ...+..++..+..+|.+.|++++|+++|++++...| +..+|..+...|...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999854 122567888999999999999999999999666555 5788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHH
Q 044791 465 LEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALN 525 (623)
Q Consensus 465 ~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~ 525 (623)
+|.+.++.+.++.+.............+...+..+...+.+.|++ ++|.++++
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~ 310 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP--------DLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH--------HHHHHHTT
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH--------HHHHHHHH
Confidence 999999999988776322100000001466777888888889987 68888773
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-14 Score=159.37 Aligned_cols=326 Identities=14% Similarity=0.101 Sum_probs=238.2
Q ss_pred CCccccccc-----cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 196 RSPNQWNNQ-----QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMD 270 (623)
Q Consensus 196 ~~p~~w~~~-----~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 270 (623)
.++..|.++ ..|++++|++.|+++.. ..|+ ....+..+..+|...|++++|++.|+
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALE--IKPD-----------------HSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-----------------hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334455555 88999999999998833 1121 23456678888999999999999884
Q ss_pred c-CCCCC---------------------------------------HH------------------------------HH
Q 044791 271 K-GVKAD---------------------------------------AS------------------------------CF 280 (623)
Q Consensus 271 ~-~~~pd---------------------------------------~~------------------------------ty 280 (623)
. ...|+ .. ..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (537)
T 3fp2_A 118 VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLS 197 (537)
T ss_dssp HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHH
Confidence 2 11121 11 11
Q ss_pred HHHHHHHhCC--------CCHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHhhc--CC
Q 044791 281 YTLFELCGNP--------KWYENAKKVHDYFLQSTIRGD--------LVLNNKVIEMYGKCGSMTDARRVFDHMAD--RS 342 (623)
Q Consensus 281 ~~Ll~~~~~~--------g~~~~A~~l~~~m~~~g~~pd--------~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--~~ 342 (623)
..+...+... |++++|+.+++++++.. |+ ..++..+...+...|++++|+.+|+++.+ ++
T Consensus 198 ~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~ 275 (537)
T 3fp2_A 198 DALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT 275 (537)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC
Confidence 1222222222 47889999999998753 33 34577788889999999999999998864 55
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHH
Q 044791 343 MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLV 421 (623)
Q Consensus 343 ~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li 421 (623)
..+|..+...|...|++++|+.+|+++.+... -+..+|..+...+...|++++|+..|+++... .| +...|..+.
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la 351 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL---NPENVYPYIQLA 351 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCSHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 66899999999999999999999999998643 36788999999999999999999999999854 33 467888999
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHh
Q 044791 422 GVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISIL 500 (623)
Q Consensus 422 ~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li 500 (623)
.+|...|++++|+++|++++...| +...|..+...|...|++++|...++.+.++.+...... .....+...-
T Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~------~~~~~~~~~a 425 (537)
T 3fp2_A 352 CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH------VGIGPLIGKA 425 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS------STTHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH------HHHHHHHHHH
Confidence 999999999999999999665555 467889999999999999999999999988876544311 1122233333
Q ss_pred hhcCcc----------ccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccC
Q 044791 501 DGKSRL----------VEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLIST 568 (623)
Q Consensus 501 ~~~~~~----------~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~ 568 (623)
..+.+. |++ ++|+.+|++..+. .|+... .....+.++...|+.++|...++.
T Consensus 426 ~~~~~~~~~~~~~~~~~~~--------~~A~~~~~~a~~~--~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 426 TILARQSSQDPTQLDEEKF--------NAAIKLLTKACEL--DPRSEQ------AKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHHHHHTC----CCHHHH--------HHHHHHHHHHHHH--CTTCHH------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhccchhhhHhHH--------HHHHHHHHHHHHh--CCCCHH------HHHHHHHHHHHhccHHHHHHHHHH
Confidence 445555 777 6999999777654 344332 122333577888999999887765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-14 Score=145.13 Aligned_cols=248 Identities=10% Similarity=0.043 Sum_probs=198.3
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC--CC-CCHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG--VK-ADASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~-pd~~ty~ 281 (623)
..|++++|+.+|+++.. ..|+ ....+..+..++.+.|++++|++.|++. .. .+..++.
T Consensus 33 ~~~~~~~A~~~~~~~~~--~~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 93 (327)
T 3cv0_A 33 KLANLAEAALAFEAVCQ--AAPE-----------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA 93 (327)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhccHHHHHHHHHHHHH--hCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHH
Confidence 89999999999998833 1111 2345567888899999999999999752 22 3567899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHhhc---CCh
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKV--------------IE-MYGKCGSMTDARRVFDHMAD---RSM 343 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~L--------------i~-~y~k~g~~~~A~~lf~~m~~---~~~ 343 (623)
.+..++...|++++|++.++++++.... +...+..+ .. .+...|++++|+++|+++.+ .+.
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 172 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA 172 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCH
Confidence 9999999999999999999999986322 22333333 22 37788999999999998865 356
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHH
Q 044791 344 DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGV 423 (623)
Q Consensus 344 ~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~ 423 (623)
..+..+...|...|++++|+.+|+++.+.. ..+..++..+...+...|++++|..+|+++.+. . ..+..++..+..+
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI-N-PGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCCHHHHHHHHHH
Confidence 689999999999999999999999999864 235788999999999999999999999998854 1 2256788899999
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCC-------------HHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 424 LGKCGHLFEAQQFIEQKLPFEPT-------------AEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 424 ~~k~g~~e~A~~lf~~~m~~~Pd-------------~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
|.+.|++++|.++|++++...|+ ..+|..+..++...|+.++|..+++...+
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999996654555 67899999999999999988877765433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-13 Score=139.75 Aligned_cols=267 Identities=11% Similarity=0.036 Sum_probs=206.5
Q ss_pred HHHHHHcCCHHHHHHHHHcCC--CCCH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 044791 253 LARLCQEGKVKEAIELMDKGV--KADA--SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSM 328 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~~--~pd~--~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~ 328 (623)
|.-....|.+..|+..+++.. .|+. .....+..+|...|++++|+..++. . -.|+..++..+...|.+.|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 555677999999999997643 3443 2456678899999999999987654 2 456788999999999999999
Q ss_pred HHHHHHHHHhhc----C-ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044791 329 TDARRVFDHMAD----R-SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFES 403 (623)
Q Consensus 329 ~~A~~lf~~m~~----~-~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~ 403 (623)
++|++.|+++.. + +...+..+..++...|++++|+++|++ ..+..++..++..+.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999863 3 455777888999999999999999988 45788999999999999999999999999
Q ss_pred HHhhcCCCCCccchhhH----HHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 044791 404 MKSEFGISPGTEHYLGL----VGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 404 m~~~~g~~p~~~ty~~L----i~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~ 478 (623)
+.+. .|+.. ...+ +..+...|++++|+.+|++++...| +...|+.+..++...|++++|+..++...++.+
T Consensus 156 ~~~~---~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 156 MQDQ---DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHH---CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhh---CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9864 35532 2233 3444456999999999999555444 778999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhH
Q 044791 479 SKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSER 558 (623)
Q Consensus 479 ~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~ 558 (623)
.. ..++..++..+...|+.. +++.++++++.+. .|+..... ++..+.+.
T Consensus 232 ~~------------~~~l~~l~~~~~~~g~~~-------eaa~~~~~~~~~~--~P~~~~~~----------d~~~~~~~ 280 (291)
T 3mkr_A 232 GH------------PETLINLVVLSQHLGKPP-------EVTNRYLSQLKDA--HRSHPFIK----------EYRAKEND 280 (291)
T ss_dssp TC------------HHHHHHHHHHHHHTTCCH-------HHHHHHHHHHHHH--CTTCHHHH----------HHHHHHHH
T ss_pred CC------------HHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHh--CCCChHHH----------HHHHHHHH
Confidence 64 346777777777788762 3356788766543 36544322 34556666
Q ss_pred HHHHHh
Q 044791 559 LAIAYG 564 (623)
Q Consensus 559 l~~A~~ 564 (623)
+++|..
T Consensus 281 fd~~~~ 286 (291)
T 3mkr_A 281 FDRLVL 286 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-15 Score=160.38 Aligned_cols=251 Identities=11% Similarity=0.058 Sum_probs=105.3
Q ss_pred HcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044791 258 QEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDH 337 (623)
Q Consensus 258 ~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~ 337 (623)
+.|++++|.+++++.-.| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|++.++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999886333 59999999999999999999999652 5778999999999999999999998876
Q ss_pred hhc--CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCcc
Q 044791 338 MAD--RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTE 415 (623)
Q Consensus 338 m~~--~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ 415 (623)
..+ +++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|..+|..+ .
T Consensus 87 ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~ 149 (449)
T 1b89_A 87 ARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------S 149 (449)
T ss_dssp ----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----------T
T ss_pred HHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------h
Confidence 654 344689999999999999999999885 378889999999999999999999999976 4
Q ss_pred chhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhh
Q 044791 416 HYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRT 495 (623)
Q Consensus 416 ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t 495 (623)
.|..|+++|++.|++++|.+.+++ . .+..+|..++.+|...|+++.|..+... +. . .|+.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~K-A---~~~~~Wk~v~~aCv~~~ef~lA~~~~l~---L~---~--------~ad~-- 209 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARK-A---NSTRTWKEVCFACVDGKEFRLAQMCGLH---IV---V--------HADE-- 209 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHH-H---TCHHHHHHHHHHHHHTTCHHHHHHTTTT---TT---T--------CHHH--
T ss_pred hHHHHHHHHHHhccHHHHHHHHHH-c---CCchhHHHHHHHHHHcCcHHHHHHHHHH---HH---h--------CHhh--
Confidence 799999999999999999999999 4 3889999999999999999987443332 11 1 1433
Q ss_pred HHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCc-ceeeeccCHHHHHHHHHHHHhHHHHHHhcccC
Q 044791 496 AISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDT-RYVLHDIDQEAKEQALLYHSERLAIAYGLIST 568 (623)
Q Consensus 496 ~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~-~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~ 568 (623)
...++..|.+.|+| ++|+.+|+.-. |+.+-. ..|+.+- ....-.+.|++.++++++.+
T Consensus 210 l~~lv~~Yek~G~~--------eEai~lLe~aL--~le~ah~~~ftel~-----il~~ky~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 210 LEELINYYQDRGYF--------EELITMLEAAL--GLERAHMGMFTELA-----ILYSKFKPQKMREHLELFWS 268 (449)
T ss_dssp HHHHHHHHHHTTCH--------HHHHHHHHHHT--TSTTCCHHHHHHHH-----HHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHCCCH--------HHHHHHHHHHh--CCcHHHHHHHHHHH-----HHHHhcCHHHHHHHHHHHHH
Confidence 44688889999998 69999885543 222111 1122211 11233467999999988764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-13 Score=134.02 Aligned_cols=216 Identities=11% Similarity=-0.051 Sum_probs=178.7
Q ss_pred HcCCHHHHHHHHHcCCC------C-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 044791 258 QEGKVKEAIELMDKGVK------A-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTD 330 (623)
Q Consensus 258 ~~g~~~~A~~l~~~~~~------p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~ 330 (623)
..|++++|++.|++.+. | +..+|..+..++...|++++|+++|+++++.. +.+..+|..+..+|.+.|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45889999999975332 1 35678999999999999999999999999874 3368999999999999999999
Q ss_pred HHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 331 ARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 331 A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
|++.|+++.+ .+..+|..+...|.+.|++++|+.+|+++.+. .|+......++..+...|++++|..+++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999999875 35679999999999999999999999999985 455555555556667789999999999888754
Q ss_pred cCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 408 FGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-----AEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 408 ~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-----~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
...+...+ .++..+...++.++|++.+++++...|+ ..+|..+...|...|++++|...++...++.+.
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 22333333 4777888889999999999997765553 478888999999999999999999999987654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-13 Score=132.55 Aligned_cols=222 Identities=12% Similarity=0.029 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCC--CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--CCC----HHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKGV--KADASCFYTLFELCGNPKWYENAKKVHDYFLQSTI--RGD----LVLNNKVI 319 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~~--~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~--~pd----~~~y~~Li 319 (623)
.+..+...+...|++++|+++|++.+ ..+..+|..+..++...|++++|+++++++++... .++ ..+|..+.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 45577888999999999999996411 17788999999999999999999999999887532 122 58899999
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044791 320 EMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 320 ~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~ 399 (623)
.+|.+.|++++|++.|+++.+.+.. ...+.+.|++++|+..|+++..... -+...+..+...+...|++++|..
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~ 160 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVK 160 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999998753222 3457778899999999999988521 245678888999999999999999
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 400 HFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 400 l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
.|+++... . ..+..+|..+..+|.+.|++++|+.+|++++...| +..+|..+..+|...|+.++|...++...++.
T Consensus 161 ~~~~a~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 161 AYTEMIKR-A-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999854 1 22567888999999999999999999999666555 47889999999999999999999999988876
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-13 Score=131.86 Aligned_cols=218 Identities=11% Similarity=0.020 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---C-------hHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---S-------MDSW 346 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~-------~~ty 346 (623)
...|..+...+...|++++|+++|+++++.. .+..+|..+..+|...|++++|++.|++..+. + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3578889999999999999999999999987 78899999999999999999999999988652 1 4689
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHH
Q 044791 347 HLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLG 425 (623)
Q Consensus 347 n~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~ 425 (623)
..+...|...|++++|+..|+++.+. .|+. ..+.+.|++++|...++.+.. ..| +...+..+...|.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHH
Confidence 99999999999999999999999985 3453 346677889999999999884 233 4667888999999
Q ss_pred hcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcC
Q 044791 426 KCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKS 504 (623)
Q Consensus 426 k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~ 504 (623)
..|++++|+++|++++...| +..+|..+...|...|++++|...++...++.+.. ...+..+-..+.
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~l~~~~~ 218 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF------------VRAYIRKATAQI 218 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH------------HHHHHHHHHHHH
Confidence 99999999999999666445 57889999999999999999999999999886543 456777788888
Q ss_pred ccccccCCcccchHHHHHHHHHHH
Q 044791 505 RLVEFRNPTLYRDDEKLKALNQMK 528 (623)
Q Consensus 505 ~~~~~~~~~~~~~~eal~~~~~M~ 528 (623)
..|++ ++|++.|++..
T Consensus 219 ~~g~~--------~~A~~~~~~a~ 234 (258)
T 3uq3_A 219 AVKEY--------ASALETLDAAR 234 (258)
T ss_dssp HTTCH--------HHHHHHHHHHH
T ss_pred HHhhH--------HHHHHHHHHHH
Confidence 88887 69999886654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-12 Score=127.88 Aligned_cols=200 Identities=13% Similarity=-0.034 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGY 353 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~ 353 (623)
...|..+...+...|++++|+++|+++++.. ..+..++..+..+|.+.|++++|+++|+++.+ .+...|..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 3567778888888888888888888888763 33677888888888888888888888887764 3455788888888
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHH
Q 044791 354 ADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFE 432 (623)
Q Consensus 354 ~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~ 432 (623)
...|++++|+.+|+++.+.+..| +...+..+..++...|++++|.++|+++.+. . .-+...+..+..+|...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-N-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHcCCHHH
Confidence 88888888888888887743455 4467777888888888888888888888754 1 2246677788888888888888
Q ss_pred HHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 433 AQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 433 A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
|.++|++++...| +...+..+...+...|+.++|.+.++.+.++.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 8888888655444 5567777888888888888888888888887654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=5.7e-12 Score=126.38 Aligned_cols=222 Identities=11% Similarity=0.006 Sum_probs=191.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcCCCC-CHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKGVKA-DASCFYTLFELCGN----PKWYENAKKVHDYFLQSTIRGDLVLNNKVIEM 321 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~~~p-d~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~ 321 (623)
..+..+...|...|++++|++.|++.+.+ +..++..|...|.. .+++++|+++|++..+.+ +...+..|..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 83 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 45567778889999999999999865544 45678889999999 999999999999999976 78899999999
Q ss_pred HHH----cCCHHHHHHHHHHhhcC-ChHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 044791 322 YGK----CGSMTDARRVFDHMADR-SMDSWHLMINGYAD----NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS-- 390 (623)
Q Consensus 322 y~k----~g~~~~A~~lf~~m~~~-~~~tyn~Li~~~~~----~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~-- 390 (623)
|.. .+++++|++.|++..+. +..++..|...|.. .+++++|+..|++..+.+ +..++..+...|..
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGR 160 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCC
Confidence 999 99999999999988765 55689999999999 999999999999999876 67788888888888
Q ss_pred --cCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHh----cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----c
Q 044791 391 --ADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGK----CGHLFEAQQFIEQKLPFEPTAEFWEALRNYARI----H 460 (623)
Q Consensus 391 --~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k----~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~----~ 460 (623)
.+++++|+..|++..+. + +...+..|..+|.. .+++++|+++|++++...+ ...+..|...|.. .
T Consensus 161 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~ 235 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVT 235 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSS
T ss_pred CCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcc
Confidence 99999999999998854 3 45678888899999 9999999999999665443 7788888888888 8
Q ss_pred CChhHHHHHHHHHHhcCCC
Q 044791 461 GDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 461 g~~~~A~~~~~~~~~m~~~ 479 (623)
++.++|.+.++...++.+.
T Consensus 236 ~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 236 RNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp CCSTTHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHHHHHcCCH
Confidence 9999999999999887543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-12 Score=123.60 Aligned_cols=200 Identities=12% Similarity=-0.041 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGY 353 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~ 353 (623)
...+..+...+...|++++|+++++++++.. +.+..++..+..+|...|++++|+++|+++.+ .+..+|..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3456777777777888888888888777753 33567777778888888888888888877654 2455777777788
Q ss_pred HHc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHH
Q 044791 354 ADN-GLGDEGLQLFEQMRKLGLQPN-EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 354 ~~~-g~~eeA~~l~~eM~~~g~~Pd-~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e 431 (623)
... |++++|+.+|+++.+.+..|+ ..++..+..++...|++++|+..|+++.+. . .-+...+..+..+|.+.|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-Q-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCCchHHHHHHHHHHHcCCHH
Confidence 888 888888888888777333343 466777777788888888888888877743 1 124566777777888888888
Q ss_pred HHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 432 EAQQFIEQKLPFEP--TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 432 ~A~~lf~~~m~~~P--d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
+|.++|++++...| +...+..+...+...|+.+.|...++.+.++.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 88888887554333 5566666777777888888777777777766544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=8e-13 Score=128.84 Aligned_cols=187 Identities=17% Similarity=0.073 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHc--CCCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDK--GVKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG 323 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~--~~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~ 323 (623)
..+..+...+.+.|++++|+..|++ ...| +...+..+..++.+.|++++|+..|++.++.. +-+...+..+..+|.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3445555566666666666666654 2233 34556666666666666666666666666643 224556666666666
Q ss_pred Hc-----------CCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 324 KC-----------GSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG 389 (623)
Q Consensus 324 k~-----------g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~ 389 (623)
+. |++++|+..|++..+ .+...|..+..+|...|++++|+..|++.++.. .+...+..+..+|.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 66 666666666665543 233456666666666666666666666666555 45556666666666
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 390 SADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 390 ~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
..|++++|+..|++..+. .| +...+..+..++.+.|++++|++.|++
T Consensus 163 ~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666666666666666532 23 344555556666666666666666655
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-13 Score=132.44 Aligned_cols=243 Identities=8% Similarity=-0.080 Sum_probs=184.8
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCC--CC-CHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGV--KA-DASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~--~p-d~~ty~ 281 (623)
..|++++|++.|+++....... .+.....+..+...|...|++++|++.|++.+ .| +..+|.
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 81 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALT---------------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFN 81 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred ccchHHHHHHHHHHHHhccccc---------------CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHH
Confidence 5799999999999984421100 01123456688889999999999999997632 33 578899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--CChHHHHHHHHHHHHcCCh
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD--RSMDSWHLMINGYADNGLG 359 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--~~~~tyn~Li~~~~~~g~~ 359 (623)
.+..++...|++++|+++|+++++.. +.+..++..+..+|.+.|++++|+++|+++.+ ++...+..++..+...|++
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE 160 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCH
Confidence 99999999999999999999999864 33678999999999999999999999999875 3334445555566778999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-----ccchhhHHHHHHhcCCHHHHH
Q 044791 360 DEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-----TEHYLGLVGVLGKCGHLFEAQ 434 (623)
Q Consensus 360 eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-----~~ty~~Li~~~~k~g~~e~A~ 434 (623)
++|+.+|++..... .++...+ .++..+...++.++|+..++.+.. ..++ ..+|..+..+|.+.|++++|.
T Consensus 161 ~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 235 (275)
T 1xnf_A 161 KQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSAT 235 (275)
T ss_dssp HHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHH
Confidence 99999998888753 3344444 467777888899999999988763 2231 577888999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 044791 435 QFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAE 470 (623)
Q Consensus 435 ~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~ 470 (623)
++|++++...|+. +.....++...|++++|.+.+
T Consensus 236 ~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 236 ALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 9999977777743 222345666778888666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-12 Score=126.15 Aligned_cols=194 Identities=13% Similarity=0.066 Sum_probs=158.1
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHH
Q 044791 275 ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMIN 351 (623)
Q Consensus 275 pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~ 351 (623)
++...+..+..++.+.|++++|+..|++.++.. +.+...+..+..+|.+.|++++|+..|++..+. +...|..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 456788899999999999999999999999864 336899999999999999999999999988753 4568999999
Q ss_pred HHHHc-----------CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhh
Q 044791 352 GYADN-----------GLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLG 419 (623)
Q Consensus 352 ~~~~~-----------g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~ 419 (623)
.|... |++++|+..|++.++. .| +..++..+..++...|++++|+..|++..+. . .+...+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~ 156 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHH
Confidence 99999 9999999999999986 44 5678889999999999999999999999976 4 67788999
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 044791 420 LVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMV 474 (623)
Q Consensus 420 Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~ 474 (623)
+..+|...|++++|+..|++++...| +...+..+...+...|+.++|...++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999777666 56788889999999999998887777653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.8e-12 Score=123.98 Aligned_cols=200 Identities=10% Similarity=-0.054 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCC---CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKGV---KADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~~---~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
.+..+...|...|++++|+++|++.+ ..+..++..+..++...|++++|+++++++++.. ..+..++..+..+|.+
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 34466778899999999999997532 3367789999999999999999999999999874 3378899999999999
Q ss_pred cCCHHHHHHHHHHhhc--C---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044791 325 CGSMTDARRVFDHMAD--R---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~--~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~ 399 (623)
.|++++|+++|+++.+ . +...|..+...|...|++++|+.+|+++.+... -+..++..+...+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999876 2 234888999999999999999999999998642 357889999999999999999999
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHH
Q 044791 400 HFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWE 451 (623)
Q Consensus 400 l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~ 451 (623)
+++.+.+. ...+...+..+...|.+.|+.++|.+++++++...|+...+.
T Consensus 197 ~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 197 YYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 99998842 223566788888999999999999999999555556544443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-12 Score=126.09 Aligned_cols=201 Identities=13% Similarity=0.080 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMING 352 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~ 352 (623)
...+|..+...+...|++++|+.+|+++++.. ..+..++..+..+|.+.|++++|+++|+++.+ .+...|..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 44566677777777778888888887777643 33577777777778888888888888877654 245577777777
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFE 432 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~ 432 (623)
|...|++++|+.+|+++.+.. ..+...+..+...+...|++++|+.+++++.+. ...+...+..+..+|.+.|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888877653 235667777777788888888888888877743 12245667777778888888888
Q ss_pred HHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 433 AQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 433 A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
|+++|++++...| +..+|..+..+|...|+.++|...++.+.++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 8888887554334 46677778888888888888888888887776553
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-11 Score=118.73 Aligned_cols=204 Identities=11% Similarity=-0.031 Sum_probs=168.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcCC---CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKGV---KADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG 323 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~~---~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~ 323 (623)
..+..+...+...|++++|+++|++.+ ..+..++..+..++...|++++|.++++++++.. ..+..++..+..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 455677888999999999999997522 2357789999999999999999999999999864 347889999999999
Q ss_pred Hc-CCHHHHHHHHHHhhc--CC---hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044791 324 KC-GSMTDARRVFDHMAD--RS---MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEA 397 (623)
Q Consensus 324 k~-g~~~~A~~lf~~m~~--~~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A 397 (623)
.. |++++|+++|+++.+ .+ ...|..+..++...|++++|+..|+++.+... -+..++..+..++...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 99 999999999999877 32 45899999999999999999999999998642 2578899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHH
Q 044791 398 FIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEAL 453 (623)
Q Consensus 398 ~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~L 453 (623)
.++++.+.+. .-..+...+..+...+...|+.++|..+++.+....|+...+..+
T Consensus 167 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 167 DYYFKKYQSR-VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHH-HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999998864 211356667777888899999999999999844456665444433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.42 E-value=5e-12 Score=125.80 Aligned_cols=228 Identities=16% Similarity=0.069 Sum_probs=183.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHcC--CCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHH
Q 044791 249 SVADLARLCQEGKVKEAIELMDKG--VKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD--LVLNNKVIEMYG 323 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~~~--~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~y~~Li~~y~ 323 (623)
...+...+...|++++|+.+|++. ..| +..++..+..++...|++++|++.++++++.+-.++ ..+|..+..+|.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 345667888999999999999763 334 344788899999999999999999999998442222 456899999999
Q ss_pred HcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044791 324 KCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIH 400 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l 400 (623)
+.|++++|++.|++..+ .+..+|..+...|...|++++|+..|++..+.. .-+..+|..+...+...+++++|++.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998875 355699999999999999999999999998762 23566777777344455699999999
Q ss_pred HHHHHhhcCCCC-CccchhhHHHHHHhcCC---HHHHHHHHHhhCCC---CCC------HHHHHHHHHHHHHcCChhHHH
Q 044791 401 FESMKSEFGISP-GTEHYLGLVGVLGKCGH---LFEAQQFIEQKLPF---EPT------AEFWEALRNYARIHGDIDLED 467 (623)
Q Consensus 401 ~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~---~e~A~~lf~~~m~~---~Pd------~~ty~~Li~a~~~~g~~~~A~ 467 (623)
|+++.+. .| +...+..+..++...|+ .++|...|++++.. .|+ ..+|..|...|...|++++|.
T Consensus 165 ~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 165 FVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999854 34 35677778888888888 77888888884432 244 257888888999999999999
Q ss_pred HHHHHHHhcCCCC
Q 044791 468 HAEELMVDLDPSK 480 (623)
Q Consensus 468 ~~~~~~~~m~~~~ 480 (623)
+.++...++.|.+
T Consensus 242 ~~~~~al~~~p~~ 254 (272)
T 3u4t_A 242 AAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHhcCccH
Confidence 9999999988765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-12 Score=124.02 Aligned_cols=202 Identities=12% Similarity=0.104 Sum_probs=155.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcC--CCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKG--VKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG 323 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~--~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~ 323 (623)
..+..+...+...|++++|+.+|++. ..| +..++..+..++...|++++|+++++++++.. ..+..++..+..+|.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 34456677788999999999999763 233 57789999999999999999999999999874 347899999999999
Q ss_pred HcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044791 324 KCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIH 400 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l 400 (623)
+.|++++|+++|+++.+ .+...|..+...+.+.|++++|+.+|+++.+.. ..+..++..+...+...|++++|+.+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998864 456689999999999999999999999999763 23678889999999999999999999
Q ss_pred HHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHH
Q 044791 401 FESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-AEFWEA 452 (623)
Q Consensus 401 ~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~ 452 (623)
|+++... ...+..++..+..+|.+.|++++|.++|++++...|+ ...+..
T Consensus 182 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 182 FAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232 (243)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence 9999854 2235678889999999999999999999996665564 334433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-11 Score=130.82 Aligned_cols=228 Identities=11% Similarity=0.028 Sum_probs=188.5
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHcC--CCC-CHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 246 LPPSVADLARLCQEGKVKEAIELMDKG--VKA-DASCFYTLFELCGNPKW-YENAKKVHDYFLQSTIRGDLVLNNKVIEM 321 (623)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~A~~l~~~~--~~p-d~~ty~~Ll~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~~y~~Li~~ 321 (623)
...+..+...+.+.|++++|+++|++. +.| +..+|+.+..++...|+ +++|++.|+++++... -+..+|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 345567777888999999999999873 345 45789999999999997 9999999999999753 378999999999
Q ss_pred HHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHH
Q 044791 322 YGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS-ADAIEEA 397 (623)
Q Consensus 322 y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~-~g~~e~A 397 (623)
|.+.|++++|+..|+++.+ .+...|..+..++.+.|++++|+..|+++++.... +...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 9999999999999999876 45669999999999999999999999999987433 67899999999998 6665777
Q ss_pred -----HHHHHHHHhhcCCCC-CccchhhHHHHHHhcC--CHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcC-------
Q 044791 398 -----FIHFESMKSEFGISP-GTEHYLGLVGVLGKCG--HLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHG------- 461 (623)
Q Consensus 398 -----~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g--~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g------- 461 (623)
++.|++.++ +.| +...|+.+..+|.+.| ++++|+++++++ ...| +...+..|...|.+.|
T Consensus 255 ~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 255 VLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 477888774 456 4668888888999988 689999999984 6556 4578888999998874
Q ss_pred --ChhHHHHHHHHH-HhcCCC
Q 044791 462 --DIDLEDHAEELM-VDLDPS 479 (623)
Q Consensus 462 --~~~~A~~~~~~~-~~m~~~ 479 (623)
.+++|.++++.+ .++++.
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHHHhCch
Confidence 258888888888 676543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=137.98 Aligned_cols=265 Identities=13% Similarity=0.074 Sum_probs=200.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHcC--CCCC-H----HHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CC-CCCHHHHHH
Q 044791 250 VADLARLCQEGKVKEAIELMDKG--VKAD-A----SCFYTLFELCGNPKWYENAKKVHDYFLQS----TI-RGDLVLNNK 317 (623)
Q Consensus 250 ~~li~~~~~~g~~~~A~~l~~~~--~~pd-~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~-~pd~~~y~~ 317 (623)
..+...+...|++++|+.+|++. +.|+ . .+|..+..++...|++++|+++++++++. +- .....++..
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 35566788999999999999752 2333 2 47888999999999999999999988764 11 123578889
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcC---------ChHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMADR---------SMDSWHLMINGYADNGL-----------------GDEGLQLFEQMRK 371 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~~---------~~~tyn~Li~~~~~~g~-----------------~eeA~~l~~eM~~ 371 (623)
+..+|...|++++|++.|++..+. ...+|..+...|...|+ +++|+..|++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999987542 22388999999999999 9999999988764
Q ss_pred c----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----ccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 372 L----GLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG----TEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 372 ~----g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~----~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
. +-.+ ...++..+...|...|++++|+..|++..+...-..+ ..++..+..+|...|++++|+++|++++.
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 1111 2357888889999999999999999988753211112 23788899999999999999999998543
Q ss_pred CCC---C----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCccc
Q 044791 443 FEP---T----AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLY 515 (623)
Q Consensus 443 ~~P---d----~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~ 515 (623)
..+ + ..++..+...|...|++++|...++...++....... .-....+..+-..+...|++
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~la~~~~~~g~~------ 359 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR------IGEARACWSLGNAHSAIGGH------ 359 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHHHHTTCH------
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh------HHHHHHHHHHHHHHHHhccH------
Confidence 222 1 4678888999999999999999999887764332110 01133566677778888887
Q ss_pred chHHHHHHHHHHH
Q 044791 516 RDDEKLKALNQMK 528 (623)
Q Consensus 516 ~~~eal~~~~~M~ 528 (623)
++|+++|++..
T Consensus 360 --~~A~~~~~~al 370 (411)
T 4a1s_A 360 --ERALKYAEQHL 370 (411)
T ss_dssp --HHHHHHHHHHH
T ss_pred --HHHHHHHHHHH
Confidence 69999886654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-10 Score=114.86 Aligned_cols=223 Identities=10% Similarity=-0.004 Sum_probs=183.9
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcC-ChHHHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK----CGSMTDARRVFDHMADR-SMDSWHLMI 350 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k----~g~~~~A~~lf~~m~~~-~~~tyn~Li 350 (623)
+..++..+...+...|++++|+++|++..+.+ +..++..|..+|.. .+++++|++.|++..+. +..++..|.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55678889999999999999999999998843 67888999999999 99999999999988765 566899999
Q ss_pred HHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCCccchhhHHH
Q 044791 351 NGYAD----NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS----ADAIEEAFIHFESMKSEFGISPGTEHYLGLVG 422 (623)
Q Consensus 351 ~~~~~----~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~----~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~ 422 (623)
..|.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|++.|++..+. + +...+..|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 78889999999999 99999999999999864 4 5667788888
Q ss_pred HHHh----cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchh
Q 044791 423 VLGK----CGHLFEAQQFIEQKLPFEPTAEFWEALRNYARI----HGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKR 494 (623)
Q Consensus 423 ~~~k----~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~----~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~ 494 (623)
.|.. .+++++|+++|++++.. -+...+..|...|.. .++.++|...++...+..+ ..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--------------~~ 219 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--------------GG 219 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--------------HH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--------------HH
Confidence 8888 99999999999995553 467888889999999 9999999999999888632 22
Q ss_pred hHHHHhhhcCc----cccccCCcccchHHHHHHHHHHHHCC
Q 044791 495 TAISILDGKSR----LVEFRNPTLYRDDEKLKALNQMKEST 531 (623)
Q Consensus 495 t~~~li~~~~~----~~~~~~~~~~~~~eal~~~~~M~~~G 531 (623)
.+..+-..+.. .+++ ++|+++|++-.+.|
T Consensus 220 a~~~l~~~~~~g~~~~~~~--------~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNE--------KQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCS--------TTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccCH--------HHHHHHHHHHHHcC
Confidence 33333333333 5555 58888886665554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.4e-12 Score=132.62 Aligned_cols=268 Identities=14% Similarity=0.090 Sum_probs=201.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcC--CCCC-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCC-CHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKG--VKAD-----ASCFYTLFELCGNPKWYENAKKVHDYFLQS----TIRG-DLVL 314 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~--~~pd-----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~~ 314 (623)
..+..+...+...|++++|+.+|++. +.|+ ..+|..+..++...|++++|+..++++++. +-.+ ...+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34456677888999999999999752 2333 357888999999999999999999987653 2122 2567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcC-----C----hHHHHHHHHHHHHcCC--------------------hHHHHHH
Q 044791 315 NNKVIEMYGKCGSMTDARRVFDHMADR-----S----MDSWHLMINGYADNGL--------------------GDEGLQL 365 (623)
Q Consensus 315 y~~Li~~y~k~g~~~~A~~lf~~m~~~-----~----~~tyn~Li~~~~~~g~--------------------~eeA~~l 365 (623)
+..+..+|...|++++|+..|++..+. + ..+|..+...|...|+ +++|+..
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 888999999999999999999987642 2 3389999999999999 9999999
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----ccchhhHHHHHHhcCCHHHHHHH
Q 044791 366 FEQMRKL----GLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG----TEHYLGLVGVLGKCGHLFEAQQF 436 (623)
Q Consensus 366 ~~eM~~~----g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~----~~ty~~Li~~~~k~g~~e~A~~l 436 (623)
|++..+. +-.+ ...++..+...|...|++++|...+++..+...-..+ ..+|..+...|...|++++|+.+
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9887642 1111 2357888889999999999999999988753221222 23788889999999999999999
Q ss_pred HHhhCCCC---CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccc
Q 044791 437 IEQKLPFE---PT----AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEF 509 (623)
Q Consensus 437 f~~~m~~~---Pd----~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~ 509 (623)
|++++.+. .+ ..++..+...|...|++++|...++...++....... .....++..+-..+...|++
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR------IGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHHHcCCH
Confidence 99854321 12 4678888999999999999999998887764432110 01134556667777888887
Q ss_pred cCCcccchHHHHHHHHHHH
Q 044791 510 RNPTLYRDDEKLKALNQMK 528 (623)
Q Consensus 510 ~~~~~~~~~eal~~~~~M~ 528 (623)
++|+++|++..
T Consensus 324 --------~~A~~~~~~al 334 (406)
T 3sf4_A 324 --------DQAMHFAEKHL 334 (406)
T ss_dssp --------HHHHHHHHHHH
T ss_pred --------HHHHHHHHHHH
Confidence 69999985543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-11 Score=120.54 Aligned_cols=240 Identities=8% Similarity=-0.024 Sum_probs=184.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--C----hHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR--S----MDSWHLMIN 351 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~--~----~~tyn~Li~ 351 (623)
..+..+...+...|++++|+++|+++++... -+..++..+..+|.+.|++++|+..|++..+. + ..+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3456677889999999999999999998642 35568889999999999999999999998762 2 225899999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCH
Q 044791 352 GYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHL 430 (623)
Q Consensus 352 ~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~ 430 (623)
.|...|++++|+..|++..+.... +..++..+...|...|++++|+..|++..+ +.| +...|..+...+...+++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986432 567899999999999999999999998883 345 455666666244445699
Q ss_pred HHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCcc
Q 044791 431 FEAQQFIEQKLPFEPT-AEFWEALRNYARIHGD---IDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRL 506 (623)
Q Consensus 431 e~A~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~---~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~ 506 (623)
++|++.|++++...|+ ...+..+..++...|+ .++|...++...++....... ........|..+-..+...
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK----YKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGG----GHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccccc----chHHHHHHHHHHHHHHHHc
Confidence 9999999997766665 6788888888888888 888888888887765332110 0000124566666777778
Q ss_pred ccccCCcccchHHHHHHHHHHHHCCcccCc
Q 044791 507 VEFRNPTLYRDDEKLKALNQMKESTYVPDT 536 (623)
Q Consensus 507 ~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~ 536 (623)
|++ ++|+++|++..+. .|+.
T Consensus 235 ~~~--------~~A~~~~~~al~~--~p~~ 254 (272)
T 3u4t_A 235 RDK--------VKADAAWKNILAL--DPTN 254 (272)
T ss_dssp TCH--------HHHHHHHHHHHHH--CTTC
T ss_pred CCH--------HHHHHHHHHHHhc--CccH
Confidence 877 6999999777653 3553
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=130.88 Aligned_cols=265 Identities=15% Similarity=0.107 Sum_probs=199.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHcC--CCCC-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHH
Q 044791 251 ADLARLCQEGKVKEAIELMDKG--VKAD-----ASCFYTLFELCGNPKWYENAKKVHDYFLQS----TIRG-DLVLNNKV 318 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~--~~pd-----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~~y~~L 318 (623)
.....+...|++++|+.+|++. ..|+ ...+..+..++...|++++|+++++++++. +..+ ...++..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 4566788999999999999752 2333 367889999999999999999999987653 2121 25678889
Q ss_pred HHHHHHcCCHHHHHHHHHHhhc-----CC----hHHHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 044791 319 IEMYGKCGSMTDARRVFDHMAD-----RS----MDSWHLMINGYADNGL--------------------GDEGLQLFEQM 369 (623)
Q Consensus 319 i~~y~k~g~~~~A~~lf~~m~~-----~~----~~tyn~Li~~~~~~g~--------------------~eeA~~l~~eM 369 (623)
...|...|++++|+..|++..+ .+ ..+|..+...|...|+ +++|+..|++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999998754 22 2388899999999999 99999999887
Q ss_pred HHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----ccchhhHHHHHHhcCCHHHHHHHHHhh
Q 044791 370 RKL----GLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG----TEHYLGLVGVLGKCGHLFEAQQFIEQK 440 (623)
Q Consensus 370 ~~~----g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~----~~ty~~Li~~~~k~g~~e~A~~lf~~~ 440 (623)
.+. +..+ ...++..+...+...|++++|...+++..+...-..+ ..++..+...|...|++++|.++|+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 642 2111 2347788888999999999999999988743211111 337888889999999999999999984
Q ss_pred CCCC---CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCc
Q 044791 441 LPFE---PT----AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPT 513 (623)
Q Consensus 441 m~~~---Pd----~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~ 513 (623)
+.+. .+ ..++..+...|...|++++|...++...++.+..... .....++..+-..+.+.|++
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~---- 319 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR------IGEGRACWSLGNAYTALGNH---- 319 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHHHHHTCH----
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHHHcCCh----
Confidence 4321 12 4678888889999999999999998887764332110 01133556777778888887
Q ss_pred ccchHHHHHHHHHHHH
Q 044791 514 LYRDDEKLKALNQMKE 529 (623)
Q Consensus 514 ~~~~~eal~~~~~M~~ 529 (623)
++|++++++..+
T Consensus 320 ----~~A~~~~~~a~~ 331 (338)
T 3ro2_A 320 ----DQAMHFAEKHLE 331 (338)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHH
Confidence 699999977654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-11 Score=132.14 Aligned_cols=233 Identities=8% Similarity=0.022 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHhhc---CChHHHHHHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS-MTDARRVFDHMAD---RSMDSWHLMING 352 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~-~~~A~~lf~~m~~---~~~~tyn~Li~~ 352 (623)
...|..+..++.+.|++++|+++++++++.. +-+..+|+.+..+|.+.|+ +++|+..|+++.+ .+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3568888889999999999999999999964 3368999999999999997 9999999999876 355699999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHh-cCCH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGK-CGHL 430 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k-~g~~ 430 (623)
|...|++++|+..|+++++.... +..+|..+..++...|++++|+..|+++++. .| +...|+.+..+|.+ .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999986432 6789999999999999999999999999953 45 57789999999999 6665
Q ss_pred HHH-----HHHHHhhCCCCC-CHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhh
Q 044791 431 FEA-----QQFIEQKLPFEP-TAEFWEALRNYARIHG--DIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDG 502 (623)
Q Consensus 431 e~A-----~~lf~~~m~~~P-d~~ty~~Li~a~~~~g--~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~ 502 (623)
++| ++.|++++.+.| +...|..+...+...| +.++|.+.++.+ +..+ .+...+..+...
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p------------~~~~al~~La~~ 318 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH------------SSPYLIAFLVDI 318 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC------------CCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC------------CCHHHHHHHHHH
Confidence 777 588888777677 5678999988888888 578776666655 3322 234566677777
Q ss_pred cCccccccCCcccc-hHHHHHHHHHH
Q 044791 503 KSRLVEFRNPTLYR-DDEKLKALNQM 527 (623)
Q Consensus 503 ~~~~~~~~~~~~~~-~~eal~~~~~M 527 (623)
+.+.++....+..+ .++|+++|+++
T Consensus 319 ~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 319 YEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHH
Confidence 76664110000001 26899999877
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=137.33 Aligned_cols=259 Identities=10% Similarity=-0.003 Sum_probs=197.1
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCC--------CC-
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGV--------KA- 275 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~--------~p- 275 (623)
..|++++|+..|+++... .|+... .....+..+...|...|++++|++.|++.+ .+
T Consensus 60 ~~g~~~~A~~~~~~al~~--~~~~~~-------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 60 NAGDCRAGVAFFQAAIQA--GTEDLR-------------TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCSCHH-------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhCcHHHHHHHHHHHHHh--cccChh-------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 889999999999988441 111000 001345677888999999999999986522 12
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCC-----------------HHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQS----TI-RGDLVLNNKVIEMYGKCGS-----------------MTDARR 333 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~-~pd~~~y~~Li~~y~k~g~-----------------~~~A~~ 333 (623)
...++..+..+|...|++++|++.++++++. +- .....++..+..+|...|+ +++|++
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 2357888999999999999999999988764 11 1135688899999999999 999999
Q ss_pred HHHHhhcC-----C----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHH
Q 044791 334 VFDHMADR-----S----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ-PN----EQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 334 lf~~m~~~-----~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~-Pd----~~ty~~li~a~~~~g~~e~A~~ 399 (623)
.|++..+. + ..+|..+...|...|++++|+..|++..+.... .+ ..++..+..+|...|++++|..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 99876531 1 237888999999999999999999998753211 12 2378888999999999999999
Q ss_pred HHHHHHhhcCCCC----CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC---C----HHHHHHHHHHHHHcCChhHHHH
Q 044791 400 HFESMKSEFGISP----GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP---T----AEFWEALRNYARIHGDIDLEDH 468 (623)
Q Consensus 400 l~~~m~~~~g~~p----~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P---d----~~ty~~Li~a~~~~g~~~~A~~ 468 (623)
.|++......-.. ...++..+..+|...|++++|.++|++++.+.+ + ..++..+...|...|+.++|..
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 9998875321111 246778889999999999999999998544211 1 3578888899999999999999
Q ss_pred HHHHHHhcCC
Q 044791 469 AEELMVDLDP 478 (623)
Q Consensus 469 ~~~~~~~m~~ 478 (623)
.++...++..
T Consensus 365 ~~~~al~~~~ 374 (411)
T 4a1s_A 365 YAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9998887643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-10 Score=134.94 Aligned_cols=272 Identities=15% Similarity=0.086 Sum_probs=164.9
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCc-cCCcc-ccccC-----CCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCCCCH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQ-LNNVP-NNMNQ-----CPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADA 277 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~-~~~~~-~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~pd~ 277 (623)
..|.+++|..+|++... .+. ..... .+.+. .........++..+..++...|++++|++.|.+. -|.
T Consensus 1061 ~lglyEEAf~IYkKa~~----~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~ 1134 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV----NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDP 1134 (1630)
T ss_pred hCCCHHHHHHHHHHcCC----HHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CCh
Confidence 78999999999997621 110 00000 00000 0001123445556666666777777777777553 455
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNG 357 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g 357 (623)
..|..++.+|.+.|++++|+++|...++.. ++....+.++.+|++.+++++.... +...+...|..+...|...|
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f---I~~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF---INGPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH---HhCCCHHHHHHHHHHHHhcC
Confidence 566667777777777777777776655532 3333334466677777666643332 23445556666667777777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHH
Q 044791 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFI 437 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf 437 (623)
++++|..+|... ..|..+..+|++.|++++|.+.+++.. +..+|..+..+|...|++..|..+.
T Consensus 1210 ~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred CHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 777777777663 366677777777777777777766542 3456666666677777777776666
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccch
Q 044791 438 EQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRD 517 (623)
Q Consensus 438 ~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~ 517 (623)
.. +. -+...+..++..|.+.|.+++|...++....+++.+.. ..|....+.+..+-++.
T Consensus 1274 l~-Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~g----------mftELaiLyaKy~pekl-------- 1332 (1630)
T 1xi4_A 1274 LH-IV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMG----------MFTELAILYSKFKPQKM-------- 1332 (1630)
T ss_pred Hh-hh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhH----------HHHHHHHHHHhCCHHHH--------
Confidence 54 32 34455667888888888888888888888777755433 44445555555555544
Q ss_pred HHHHHHH
Q 044791 518 DEKLKAL 524 (623)
Q Consensus 518 ~eal~~~ 524 (623)
.|++++|
T Consensus 1333 mEhlk~f 1339 (1630)
T 1xi4_A 1333 REHLELF 1339 (1630)
T ss_pred HHHHHHH
Confidence 3666666
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4e-11 Score=112.46 Aligned_cols=167 Identities=12% Similarity=0.083 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMING 352 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~ 352 (623)
+...|..|..++.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|+..++.... .+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 44566777777777777777777777776653 22566677777777777777777777766543 234466666666
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e 431 (623)
+...+++++|...+.+..+... -+..++..+..++.+.|++++|++.|++..+. .| +..+|..+..+|.+.|+++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---KPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---cchhhhHHHHHHHHHHHCCCHH
Confidence 7777777777777777665422 24556666667777777777777777766632 33 4556666777777777777
Q ss_pred HHHHHHHhhCCCCCCH
Q 044791 432 EAQQFIEQKLPFEPTA 447 (623)
Q Consensus 432 ~A~~lf~~~m~~~Pd~ 447 (623)
+|++.|++++++.|+.
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 7777777755555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-10 Score=135.40 Aligned_cols=297 Identities=10% Similarity=0.020 Sum_probs=149.7
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044791 252 DLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDA 331 (623)
Q Consensus 252 li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A 331 (623)
+...+...|.+++|+.+|++.-.. ....+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~-~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVN-TSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCH-HHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 445566778888888888764321 122233332 445677777766643 1355666777777777777777
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 044791 332 RRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGIS 411 (623)
Q Consensus 332 ~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~ 411 (623)
+..|.+. .|...|.-++.+|.+.|++++|+++|...++.. ++....+.++.+|++.+++++...+. . .
T Consensus 1125 IdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~----~ 1192 (1630)
T 1xi4_A 1125 IDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N----G 1192 (1630)
T ss_pred HHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h----C
Confidence 7777543 556666667777777777777777776555432 22222223555555555555322221 1 1
Q ss_pred CCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-----C-C---
Q 044791 412 PGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK-----A-D--- 482 (623)
Q Consensus 412 p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~-----~-~--- 482 (623)
++...|..+.+.|...|++++|..+|.. . ..|..+..+|++.|+++.|.+++++......-. . .
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~k-A------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNN-V------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKE 1265 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHh-h------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhH
Confidence 1223333445555555555555555555 1 245555555555555554444444432211000 0 0
Q ss_pred --CCCCC--CCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhH
Q 044791 483 --PKKIP--TPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSER 558 (623)
Q Consensus 483 --~~~~~--~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~ 558 (623)
..... ....+...+..++..|.+.|.| +||+.+++. |+.-+..+.... + .........+.++
T Consensus 1266 f~LA~~cgl~Iiv~~deLeeli~yYe~~G~f--------eEAI~LlE~----aL~LeraH~gmf-t-ELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1266 FRLAQMCGLHIVVHADELEELINYYQDRGYF--------EELITMLEA----ALGLERAHMGMF-T-ELAILYSKFKPQK 1331 (1630)
T ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHcCCH--------HHHHHHHHH----HhccChhHhHHH-H-HHHHHHHhCCHHH
Confidence 00000 0002233455667777777777 688888733 332232221110 0 0001123356788
Q ss_pred HHHHHhcccCC-CCCh-------hHHHhh----HhhhcchhHHHH
Q 044791 559 LAIAYGLISTP-ARTP-------LRIIKN----LRVCGDCHNAIK 591 (623)
Q Consensus 559 l~~A~~ll~~m-~~~~-------~~i~~~----l~~~g~~~~a~~ 591 (623)
+.++.+++.+- ...+ ..+|.. |...|+.+.|..
T Consensus 1332 lmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1332 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 88888877643 2211 112322 356677777764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-09 Score=118.66 Aligned_cols=334 Identities=9% Similarity=-0.021 Sum_probs=238.0
Q ss_pred CCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHH----cCCHHHHHHHHHcCCCC-CHHHH
Q 044791 206 NQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQ----EGKVKEAIELMDKGVKA-DASCF 280 (623)
Q Consensus 206 ~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~~~~p-d~~ty 280 (623)
.+++++|+..|++....+ .......|...|.. .+++++|++.|++.... +...+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---------------------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CcCHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 789999999999773210 12345567777888 89999999999763332 56778
Q ss_pred HHHHHHHhC----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcC-ChHHHHHHHH
Q 044791 281 YTLFELCGN----PKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK----CGSMTDARRVFDHMADR-SMDSWHLMIN 351 (623)
Q Consensus 281 ~~Ll~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k----~g~~~~A~~lf~~m~~~-~~~tyn~Li~ 351 (623)
..|...|.. .+++++|+++|++..+.| +...+..|..+|.. .++.++|++.|++..+. +..++..|..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888887 789999999999998876 67888889999988 78999999999987654 5668888988
Q ss_pred HHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCCccchhhHHHH
Q 044791 352 GYAD----NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS----ADAIEEAFIHFESMKSEFGISPGTEHYLGLVGV 423 (623)
Q Consensus 352 ~~~~----~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~----~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~ 423 (623)
.|.. .+++++|+..|++..+.| +..++..|...|.. .++.++|..+|+...+. + +...+..|..+
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 264 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-G---NSIAQFRLGYI 264 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-T---CHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHH
Confidence 8988 899999999999999875 56778888888876 78999999999988753 2 45566677777
Q ss_pred HHh----cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchh
Q 044791 424 LGK----CGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIH-----GDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKR 494 (623)
Q Consensus 424 ~~k----~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~-----g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~ 494 (623)
|.. .++.++|+++|+++.. .-+...+..|...|... ++.++|...++...+... ..
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~--------------~~ 329 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAE-QGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD--------------AT 329 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC--------------HH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC--------------HH
Confidence 877 8999999999999555 34667778888888887 899999999988877531 12
Q ss_pred hHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHH----HhHHHHHHhcccCCC
Q 044791 495 TAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYH----SERLAIAYGLISTPA 570 (623)
Q Consensus 495 t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~----~g~l~~A~~ll~~m~ 570 (623)
.+..+-..+...|. ..+.++|+++|++..+.|. . .+....+.++.. .+..++|+.++..-.
T Consensus 330 a~~~lg~~y~~~g~-----~~~~~~A~~~~~~a~~~~~---~-------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 330 AQANLGAIYFRLGS-----EEEHKKAVEWFRKAAAKGE---K-------AAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHHHHHHHHHSCC-----HHHHHHHHHHHHHHHHTTC---H-------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-----cccHHHHHHHHHHHHHCCC---H-------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 22222222222120 0122689999987776642 1 122222234444 466667766665421
Q ss_pred --CChhH---HHhhHhh----hcchhHHHHHHHHHhCCc
Q 044791 571 --RTPLR---IIKNLRV----CGDCHNAIKIMSRIVGRE 600 (623)
Q Consensus 571 --~~~~~---i~~~l~~----~g~~~~a~~l~~~~~~~~ 600 (623)
..+.. +-..+.. .+|.++|.+.+.+..+.+
T Consensus 395 ~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 395 EQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 11111 1112222 578888888877766544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.8e-12 Score=126.95 Aligned_cols=260 Identities=10% Similarity=-0.019 Sum_probs=195.0
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCC--------CC-
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGV--------KA- 275 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~--------~p- 275 (623)
..|++++|+..|+++... .|+... .....+..+...|...|++++|++++++.+ .+
T Consensus 17 ~~g~~~~A~~~~~~al~~--~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAVQV--GTEDLK-------------TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCSCHH-------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HhccHHHHHHHHHHHHhh--CcccHH-------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence 689999999999988441 111000 012355677888999999999999986421 22
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------HHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTI-RGD----LVLNNKVIEMYGKCGS--------------------MTD 330 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~y~~Li~~y~k~g~--------------------~~~ 330 (623)
...++..+..++...|++++|++.+++.++... ..+ ..++..+...|...|+ +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 245788899999999999999999998876411 122 4588889999999999 999
Q ss_pred HHHHHHHhhcC-----C----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHH
Q 044791 331 ARRVFDHMADR-----S----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGL-QPN----EQTFLAVFSACGSADAIEE 396 (623)
Q Consensus 331 A~~lf~~m~~~-----~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~-~Pd----~~ty~~li~a~~~~g~~e~ 396 (623)
|++.|++..+. + ..+|..+...+...|++++|+..|++..+... ..+ ..++..+...+...|++++
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999876431 2 23788899999999999999999999875311 111 3478888899999999999
Q ss_pred HHHHHHHHHhhcCCCCC----ccchhhHHHHHHhcCCHHHHHHHHHhhCCCC---CC----HHHHHHHHHHHHHcCChhH
Q 044791 397 AFIHFESMKSEFGISPG----TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE---PT----AEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 397 A~~l~~~m~~~~g~~p~----~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~---Pd----~~ty~~Li~a~~~~g~~~~ 465 (623)
|..++++......-..+ ..++..+...|...|++++|..+|++++... .+ ..++..+...|...|++++
T Consensus 242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 242 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999988743211112 4577788899999999999999999854321 12 3577888999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 044791 466 EDHAEELMVDLDPS 479 (623)
Q Consensus 466 A~~~~~~~~~m~~~ 479 (623)
|...++...++...
T Consensus 322 A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 322 AMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-11 Score=123.12 Aligned_cols=235 Identities=12% Similarity=0.095 Sum_probs=168.2
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHcCCC----------C-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------C
Q 044791 245 VLPPSVADLARLCQEGKVKEAIELMDKGVK----------A-DASCFYTLFELCGNPKWYENAKKVHDYFLQS------T 307 (623)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~----------p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~------g 307 (623)
....+..+...|...|++++|+.+|++.+. + ...++..+..++...|++++|+++++++++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456677888899999999999999965322 2 2456888999999999999999999998875 2
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc---
Q 044791 308 IRG-DLVLNNKVIEMYGKCGSMTDARRVFDHMADR-----------SMDSWHLMINGYADNGLGDEGLQLFEQMRKL--- 372 (623)
Q Consensus 308 ~~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-----------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~--- 372 (623)
-.+ ...++..+..+|...|++++|+++|+++.+. ...+|..+...|...|++++|+.+|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 222 3678899999999999999999999987642 2237888999999999999999999999865
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc------CCCCCccchh-------hHHHHHHhcCCHHHHHH
Q 044791 373 ---GLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEF------GISPGTEHYL-------GLVGVLGKCGHLFEAQQ 435 (623)
Q Consensus 373 ---g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~------g~~p~~~ty~-------~Li~~~~k~g~~e~A~~ 435 (623)
+..| ...++..+..+|...|++++|.++|+++.... ...+...... .+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2233 34578888999999999999999999988531 1222222222 22233334455556666
Q ss_pred HHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 436 FIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 436 lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
.+++.....| +..+|..|..+|...|++++|.+.++...++.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 6666333334 3468889999999999999999999998887554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.7e-12 Score=131.47 Aligned_cols=259 Identities=10% Similarity=-0.029 Sum_probs=196.2
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCC--------CCC
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGV--------KAD 276 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~--------~pd 276 (623)
..|++++|+..|+++... .|+... .....+..+...|...|++++|+..|++.+ .+.
T Consensus 21 ~~g~~~~A~~~~~~al~~--~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 21 KSGDCRAGVSFFEAAVQV--GTEDLK-------------TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCSCHH-------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhccHHHHHHHHHHHHhc--CcccHH-------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 789999999999988441 111000 012355677888999999999999986421 122
Q ss_pred -HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------HHH
Q 044791 277 -ASCFYTLFELCGNPKWYENAKKVHDYFLQSTI-RGD----LVLNNKVIEMYGKCGS--------------------MTD 330 (623)
Q Consensus 277 -~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~y~~Li~~y~k~g~--------------------~~~ 330 (623)
..++..+..++...|++++|+..+++.++... ..+ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 35688899999999999999999998876411 112 4588899999999999 999
Q ss_pred HHHHHHHhhcC-----C----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHH
Q 044791 331 ARRVFDHMADR-----S----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGL-QPN----EQTFLAVFSACGSADAIEE 396 (623)
Q Consensus 331 A~~lf~~m~~~-----~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~-~Pd----~~ty~~li~a~~~~g~~e~ 396 (623)
|++.|++..+. + ..+|..+...|...|++++|+..|++..+... .++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999876531 1 23789999999999999999999999875311 122 3478888999999999999
Q ss_pred HHHHHHHHHhhcCCCCC----ccchhhHHHHHHhcCCHHHHHHHHHhhCCC---CCC----HHHHHHHHHHHHHcCChhH
Q 044791 397 AFIHFESMKSEFGISPG----TEHYLGLVGVLGKCGHLFEAQQFIEQKLPF---EPT----AEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 397 A~~l~~~m~~~~g~~p~----~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~---~Pd----~~ty~~Li~a~~~~g~~~~ 465 (623)
|...+++......-..+ ..++..+...|...|++++|.++|++++.+ ..+ ..++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999988743111111 457888899999999999999999984431 122 4678888889999999999
Q ss_pred HHHHHHHHHhcCC
Q 044791 466 EDHAEELMVDLDP 478 (623)
Q Consensus 466 A~~~~~~~~~m~~ 478 (623)
|...++...++..
T Consensus 326 A~~~~~~al~~~~ 338 (406)
T 3sf4_A 326 AMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988777543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-10 Score=125.65 Aligned_cols=266 Identities=10% Similarity=-0.004 Sum_probs=192.7
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHcC-----------CCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----C-
Q 044791 246 LPPSVADLARLCQEGKVKEAIELMDKG-----------VKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQS-----T- 307 (623)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~A~~l~~~~-----------~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-----g- 307 (623)
...++.|...+...|++++|++.|++. ..| ...+|+.+..+|...|++++|+..+++.++. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 356778888999999999999998541 123 3578999999999999999999999988753 1
Q ss_pred CC-CCHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcC---ChHHHHHHHHH---HHHcCChHHHHHHHHHHHHcCCCCCH
Q 044791 308 IR-GDLVLNNKVIEMYGKCG--SMTDARRVFDHMADR---SMDSWHLMING---YADNGLGDEGLQLFEQMRKLGLQPNE 378 (623)
Q Consensus 308 ~~-pd~~~y~~Li~~y~k~g--~~~~A~~lf~~m~~~---~~~tyn~Li~~---~~~~g~~eeA~~l~~eM~~~g~~Pd~ 378 (623)
.. -...++..+..++.+.| ++++|++.|++..+. +...+..+..+ +...++.++|++.|++.++... -+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cch
Confidence 11 23577877777776654 699999999988652 34455555444 4567888999999999887632 245
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHH
Q 044791 379 QTFLAVFSACGS----ADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-AEFWEAL 453 (623)
Q Consensus 379 ~ty~~li~a~~~----~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~L 453 (623)
.++..+...+.. .|++++|.+++++.... ...+..++..+...|.+.|++++|++.|++++...|+ ..+|..|
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 666666655554 46788999999988743 1225667888999999999999999999997776674 4566666
Q ss_pred HHHHHHc-------------------CChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcc
Q 044791 454 RNYARIH-------------------GDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTL 514 (623)
Q Consensus 454 i~a~~~~-------------------g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~ 514 (623)
..+|... +..+.|...++...++.+.... .+..+-..+...|++
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------~~~~lg~~~~~~~~~----- 350 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFR------------VCSILASLHALADQY----- 350 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCC------------CHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhh------------hhhhHHHHHHHhccH-----
Confidence 6555432 2356777788888888776543 566677778888887
Q ss_pred cchHHHHHHHHHHHHCCccc
Q 044791 515 YRDDEKLKALNQMKESTYVP 534 (623)
Q Consensus 515 ~~~~eal~~~~~M~~~Gi~P 534 (623)
++|++.|++..+....+
T Consensus 351 ---~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 351 ---EEAEYYFQKEFSKELTP 367 (472)
T ss_dssp ---HHHHHHHHHHHHSCCCH
T ss_pred ---HHHHHHHHHHHhcCCCC
Confidence 69999998777655433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-10 Score=108.72 Aligned_cols=166 Identities=13% Similarity=0.115 Sum_probs=144.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a 387 (623)
+..+|..|...|.+.|++++|++.|++..+ .+..+|..+...|.+.|++++|+..+.+....... +...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 678999999999999999999999999875 35669999999999999999999999999876433 56777888888
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHH
Q 044791 388 CGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLE 466 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A 466 (623)
+...++++.|...+...... ..-+...+..+..+|.+.|++++|++.|++++.+.| +..+|..+..+|...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998853 222567788899999999999999999999776666 568899999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 044791 467 DHAEELMVDLDPS 479 (623)
Q Consensus 467 ~~~~~~~~~m~~~ 479 (623)
.+.++...+++++
T Consensus 161 ~~~~~~al~~~p~ 173 (184)
T 3vtx_A 161 VKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHTTHH
T ss_pred HHHHHHHHhCCcc
Confidence 9999999987643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-09 Score=115.97 Aligned_cols=311 Identities=10% Similarity=-0.020 Sum_probs=228.8
Q ss_pred hHHHHHHHHHHH----cCCHHHHHHHHHcCCC-CCHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044791 247 PPSVADLARLCQ----EGKVKEAIELMDKGVK-ADASCFYTLFELCGN----PKWYENAKKVHDYFLQSTIRGDLVLNNK 317 (623)
Q Consensus 247 ~~~~~li~~~~~----~g~~~~A~~l~~~~~~-pd~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~y~~ 317 (623)
.....|...|.. .+++++|+..|++... -+...+..|...|.. .+++++|+++|++..+.| +...+..
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 116 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQN 116 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344566666777 8999999999975322 366788889999988 899999999999999876 6788888
Q ss_pred HHHHHHH----cCCHHHHHHHHHHhhcC-ChHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 318 VIEMYGK----CGSMTDARRVFDHMADR-SMDSWHLMINGYAD----NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSAC 388 (623)
Q Consensus 318 Li~~y~k----~g~~~~A~~lf~~m~~~-~~~tyn~Li~~~~~----~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~ 388 (623)
|..+|.. .+++++|++.|++..+. +...+..|...|.. .+++++|+..|++..+.| +..++..|...|
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 193 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMY 193 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 9999998 88999999999988765 45588888888888 889999999999999875 678888888888
Q ss_pred Hh----cCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHh----cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH-
Q 044791 389 GS----ADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGK----CGHLFEAQQFIEQKLPFEPTAEFWEALRNYARI- 459 (623)
Q Consensus 389 ~~----~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k----~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~- 459 (623)
.. .++.++|.+.|+...+. + +...+..|..+|.. .++.++|+++|+++.. ..+...+..|...|..
T Consensus 194 ~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 194 SRGLGVERNDAISAQWYRKSATS-G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE-QGNSIAQFRLGYILEQG 268 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHT
T ss_pred hcCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHCC
Confidence 87 89999999999998854 3 45677788888886 7899999999999555 3567777788888887
Q ss_pred ---cCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCcc-----ccccCCcccchHHHHHHHHHHHHCC
Q 044791 460 ---HGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRL-----VEFRNPTLYRDDEKLKALNQMKEST 531 (623)
Q Consensus 460 ---~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~-----~~~~~~~~~~~~eal~~~~~M~~~G 531 (623)
.++.++|...++...+... ...+..+-..+... +++ ++|+.+|++..+.|
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~~--------------~~a~~~Lg~~y~~~~~g~~~~~--------~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQGN--------------SDGQYYLAHLYDKGAEGVAKNR--------EQAISWYTKSAEQG 326 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHHCBTTBCCCH--------HHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHcCCCCCcCCH--------HHHHHHHHHHHhcC
Confidence 8999999988888876421 12222222222222 344 79999998887776
Q ss_pred cccCcceeeeccCHHHHHHHHHHH---HhHHHHHHhcccCCC--CChhH---HHhhHhh----hcchhHHHHHHHHHhCC
Q 044791 532 YVPDTRYVLHDIDQEAKEQALLYH---SERLAIAYGLISTPA--RTPLR---IIKNLRV----CGDCHNAIKIMSRIVGR 599 (623)
Q Consensus 532 i~Pd~~t~~~li~~~~k~~~~~~~---~g~l~~A~~ll~~m~--~~~~~---i~~~l~~----~g~~~~a~~l~~~~~~~ 599 (623)
.. .+....+.++.. .++.++|+.++.+-. ..+.. +-..+.. .++..+|++.+.+..+.
T Consensus 327 ~~----------~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 327 DA----------TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp CH----------HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CH----------HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 32 122222233333 236777777765432 11111 1122233 57888899988887765
Q ss_pred c
Q 044791 600 E 600 (623)
Q Consensus 600 ~ 600 (623)
+
T Consensus 397 ~ 397 (490)
T 2xm6_A 397 G 397 (490)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.3e-11 Score=128.01 Aligned_cols=353 Identities=8% Similarity=-0.067 Sum_probs=210.1
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc----------CCC
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK----------GVK 274 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~----------~~~ 274 (623)
..|++++|++.|++... ...... ....+.....++..+..+|...|++++|+..|++ ...
T Consensus 63 ~~G~~~eAl~~~~kAl~---------~~~~~~-~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEE---------LIQQEH-ADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HTTCHHHHHHHHHHHHH---------HHHHHS-GGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HCCCHHHHHHHHHHHHH---------HHHhcC-ccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 78999999999997622 100000 0011223445677899999999999999998853 112
Q ss_pred C-CHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHhhc---CChHH
Q 044791 275 A-DASCFYTLFELCGN--PKWYENAKKVHDYFLQSTIRGDLVLNNKVIEM---YGKCGSMTDARRVFDHMAD---RSMDS 345 (623)
Q Consensus 275 p-d~~ty~~Ll~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~---y~k~g~~~~A~~lf~~m~~---~~~~t 345 (623)
+ ...++..+..++.+ .+++++|++.|++.++... -+...+..+..+ +...++.++|++.|++..+ .+...
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 2 34567666655544 4579999999999998642 245666666555 4456788889999987654 34556
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhH
Q 044791 346 WHLMINGYAD----NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGL 420 (623)
Q Consensus 346 yn~Li~~~~~----~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~L 420 (623)
+..+...+.. .|++++|..+|++..+... .+..++..+...|...|++++|...|++..+. .| +..++..|
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l 287 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---IPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---CCChHHHHHHH
Confidence 7666666555 4678899999999887642 36678889999999999999999999998853 44 34556666
Q ss_pred HHHHHhc-------------------CCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 421 VGVLGKC-------------------GHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 421 i~~~~k~-------------------g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
..+|... +..++|...|+++++..| +..+|..+...|...|++++|+..++...++.+..
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 6555332 346678888887555455 34678888999999999999999999998876542
Q ss_pred CCCCCCCCCCCchhhHHHHhh-hcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhH-
Q 044791 481 ADPKKIPTPPPKKRTAISILD-GKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSER- 558 (623)
Q Consensus 481 ~~~~~~~~~~p~~~t~~~li~-~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~- 558 (623)
.. ....+..+-. .....+++ ++|+..|++..+ +.|+...... .+....+
T Consensus 368 ~~---------~~~~~~~~~~~~~~~~~~~--------~~Ai~~y~kal~--i~~~~~~~~~----------~~~~l~~~ 418 (472)
T 4g1t_A 368 VA---------KQLLHLRYGNFQLYQMKCE--------DKAIHHFIEGVK--INQKSREKEK----------MKDKLQKI 418 (472)
T ss_dssp HH---------HHHHHHHHHHHHHHTSSCH--------HHHHHHHHHHHH--SCCCCHHHHH----------HHHHHHHH
T ss_pred hH---------HHHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHh--cCcccHHHHH----------HHHHHHHH
Confidence 11 0111111111 12234544 699999866554 3344321111 1111111
Q ss_pred HHHHHhcccCCCCChh---HHHhhHhhhcchhHHHHHHHHHhCCceeee
Q 044791 559 LAIAYGLISTPARTPL---RIIKNLRVCGDCHNAIKIMSRIVGRELIVR 604 (623)
Q Consensus 559 l~~A~~ll~~m~~~~~---~i~~~l~~~g~~~~a~~l~~~~~~~~~~~r 604 (623)
+..++ ...+.... .+-..+...|+..+|++.+.+..+-+-...
T Consensus 419 ~~~~l---~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 419 AKMRL---SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHH---HHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 11222 22222211 122334666889999998888776544333
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=6.4e-10 Score=114.03 Aligned_cols=216 Identities=11% Similarity=0.123 Sum_probs=171.6
Q ss_pred HHHHHHHHcCCC---CCHHHHHHHHHHHh-------CCCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044791 263 KEAIELMDKGVK---ADASCFYTLFELCG-------NPKWY-------ENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 263 ~~A~~l~~~~~~---pd~~ty~~Ll~~~~-------~~g~~-------~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~ 325 (623)
++|+.+|++.+. -+...|..++..+. +.|++ ++|..+|++.++.-.+-+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 677777776332 35667777777765 45886 89999999999841233677999999999999
Q ss_pred CCHHHHHHHHHHhhcC---ChH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHHHHHHH
Q 044791 326 GSMTDARRVFDHMADR---SMD-SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSAC-GSADAIEEAFIH 400 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~---~~~-tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~-~~~g~~e~A~~l 400 (623)
|++++|.++|+++.+. +.. .|..++..+.+.|++++|..+|++.++... .+...|....... ...|++++|..+
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998763 344 899999999999999999999999997642 2344454433332 237999999999
Q ss_pred HHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC---CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 401 FESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP---FEP--TAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 401 ~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~---~~P--d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
|+...+... -+...|..++..+.+.|++++|..+|++++. +.| ....|..++..+...|+.+.|..+++.+.+
T Consensus 192 ~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 192 FELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999986422 2567888999999999999999999999655 244 467899999999999999999999999999
Q ss_pred cCCCCC
Q 044791 476 LDPSKA 481 (623)
Q Consensus 476 m~~~~~ 481 (623)
..|+..
T Consensus 270 ~~p~~~ 275 (308)
T 2ond_A 270 AFREEY 275 (308)
T ss_dssp HTTTTT
T ss_pred Hccccc
Confidence 888754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=7e-11 Score=129.34 Aligned_cols=204 Identities=11% Similarity=0.046 Sum_probs=172.5
Q ss_pred CHHHHHHHHHc--CCCC-CHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 261 KVKEAIELMDK--GVKA-DASCFYTLFELCGNPKWY-ENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFD 336 (623)
Q Consensus 261 ~~~~A~~l~~~--~~~p-d~~ty~~Ll~~~~~~g~~-~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~ 336 (623)
++++|+..+++ ...| +...+..+..++...|++ ++|++.|++.++.. +-+..+|..|..+|.+.|++++|++.|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 36677777753 3334 678899999999999999 99999999999864 3358999999999999999999999999
Q ss_pred Hhhc--CChHHHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHHHH
Q 044791 337 HMAD--RSMDSWHLMINGYADN---------GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA--------DAIEEA 397 (623)
Q Consensus 337 ~m~~--~~~~tyn~Li~~~~~~---------g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~--------g~~e~A 397 (623)
+..+ ++...|..+...|... |++++|+..|++.++... -+...|..+..+|... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 9875 5567899999999999 999999999999998642 2578899999999988 999999
Q ss_pred HHHHHHHHhhcCCCC----CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHH
Q 044791 398 FIHFESMKSEFGISP----GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHA 469 (623)
Q Consensus 398 ~~l~~~m~~~~g~~p----~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~ 469 (623)
++.|++..+. .| +...|..+..+|...|++++|++.|++++...| +...+..+..++...|+.++|.+.
T Consensus 241 ~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 241 LSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999853 34 677899999999999999999999999777666 456788888899988888866553
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-09 Score=120.52 Aligned_cols=127 Identities=15% Similarity=0.174 Sum_probs=89.7
Q ss_pred CCCccccccc----cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 195 PRSPNQWNNQ----QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMD 270 (623)
Q Consensus 195 ~~~p~~w~~~----~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 270 (623)
|.+...|..+ +.|++++|..+|+++.. ..|+ ....+..++..+.+.|++++|..+|+
T Consensus 10 P~~~~~w~~l~~~~~~~~~~~a~~~~e~al~--~~P~-----------------~~~~w~~~~~~~~~~~~~~~a~~~~~ 70 (530)
T 2ooe_A 10 PYDLDAWSILIREAQNQPIDKARKTYERLVA--QFPS-----------------SGRFWKLYIEAEIKAKNYDKVEKLFQ 70 (530)
T ss_dssp TTCHHHHHHHHHHHHSSCHHHHHHHHHHHHT--TCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3344567655 68999999999999843 2222 23455577888889999999999998
Q ss_pred cCC--CCCHHHHHHHHHHH-hCCCCHHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHH---------cCCHHHHH
Q 044791 271 KGV--KADASCFYTLFELC-GNPKWYENAKK----VHDYFLQS-TIRG-DLVLNNKVIEMYGK---------CGSMTDAR 332 (623)
Q Consensus 271 ~~~--~pd~~ty~~Ll~~~-~~~g~~~~A~~----l~~~m~~~-g~~p-d~~~y~~Li~~y~k---------~g~~~~A~ 332 (623)
+.+ .|+...|..++... ...|++++|.+ +|++.++. |..| +...|...+....+ .|++++|+
T Consensus 71 ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~ 150 (530)
T 2ooe_A 71 RCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVR 150 (530)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHH
Confidence 743 47777777666533 34566666554 77777653 6544 46788888777655 68899999
Q ss_pred HHHHHhhc
Q 044791 333 RVFDHMAD 340 (623)
Q Consensus 333 ~lf~~m~~ 340 (623)
.+|++..+
T Consensus 151 ~~y~~al~ 158 (530)
T 2ooe_A 151 RVYQRGCV 158 (530)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99998765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-10 Score=120.47 Aligned_cols=228 Identities=9% Similarity=-0.032 Sum_probs=178.9
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCC-----CC----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCC----CCHHHHH
Q 044791 252 DLARLCQEGKVKEAIELMDKGVK-----AD----ASCFYTLFELCGNPKWYENAKKVHDYFLQS--TIR----GDLVLNN 316 (623)
Q Consensus 252 li~~~~~~g~~~~A~~l~~~~~~-----pd----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~--g~~----pd~~~y~ 316 (623)
+...+...|++++|++.|++.+. +| ..+|..+..++...|++++|++.+.+.++. ... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556789999999999976332 33 357889999999999999999999998764 111 1246889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcC-----Ch----HHHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CCCHHHHH
Q 044791 317 KVIEMYGKCGSMTDARRVFDHMADR-----SM----DSWHLMINGYADNGLGDEGLQLFEQMRKL----GL-QPNEQTFL 382 (623)
Q Consensus 317 ~Li~~y~k~g~~~~A~~lf~~m~~~-----~~----~tyn~Li~~~~~~g~~eeA~~l~~eM~~~----g~-~Pd~~ty~ 382 (623)
.+..+|...|++++|++.|++..+. +. .+|+.+...|...|++++|+..|++..+. +. .-...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 9999999999999999999987642 22 38999999999999999999999999872 33 23457889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCC--CC-CccchhhHHHHHHhcCC---HHHHHHHHHhhCCCCCCH-HHHHHHHH
Q 044791 383 AVFSACGSADAIEEAFIHFESMKSEFGI--SP-GTEHYLGLVGVLGKCGH---LFEAQQFIEQKLPFEPTA-EFWEALRN 455 (623)
Q Consensus 383 ~li~a~~~~g~~e~A~~l~~~m~~~~g~--~p-~~~ty~~Li~~~~k~g~---~e~A~~lf~~~m~~~Pd~-~ty~~Li~ 455 (623)
.+..+|.+.|++++|...+++..+-..- .+ ....+..|...|...|+ +++|+.++++ .+..++. ..+..|..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES-KMLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 9999999999999999999987753111 11 12335677888888999 9999999999 6544433 46778888
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 456 YARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 456 a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
.|...|+.++|...++...++....
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988876553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.8e-11 Score=121.21 Aligned_cols=195 Identities=12% Similarity=0.088 Sum_probs=134.5
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHcCC----------CC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CC
Q 044791 246 LPPSVADLARLCQEGKVKEAIELMDKGV----------KA-DASCFYTLFELCGNPKWYENAKKVHDYFLQS------TI 308 (623)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~A~~l~~~~~----------~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~------g~ 308 (623)
...+..+...|...|++++|+++|++.+ .+ ...++..+..++...|++++|+++++++++. +-
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 4456677888899999999999986422 12 2457889999999999999999999998875 22
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--------C---hHHHHHHHHHHHHcCChHHHHHHHHHHHHc----
Q 044791 309 RG-DLVLNNKVIEMYGKCGSMTDARRVFDHMADR--------S---MDSWHLMINGYADNGLGDEGLQLFEQMRKL---- 372 (623)
Q Consensus 309 ~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~--------~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~---- 372 (623)
.+ ...++..+..+|.+.|++++|+++|+++.+. + ..+|..+...|...|++++|+.+|+++.+.
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 22 3577888999999999999999999988643 2 237889999999999999999999999863
Q ss_pred ---CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 373 ---GLQPNE-------QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 373 ---g~~Pd~-------~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
...+.. ..+..+...+...+.+++|...+...... ......++..|..+|.+.|++++|.++|++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHC------CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122221 12222233333445555555566555421 112456788899999999999999999998543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.6e-11 Score=130.08 Aligned_cols=206 Identities=8% Similarity=-0.026 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHH
Q 044791 293 YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSM-TDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQ 368 (623)
Q Consensus 293 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~-~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~e 368 (623)
+++++..+++..+.. ..+...+..+..+|...|++ ++|++.|++..+. +...|..+..+|.+.|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 677777887766542 34789999999999999999 9999999988653 466999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhc--------CCH
Q 044791 369 MRKLGLQPNEQTFLAVFSACGSA---------DAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKC--------GHL 430 (623)
Q Consensus 369 M~~~g~~Pd~~ty~~li~a~~~~---------g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~--------g~~ 430 (623)
.++. .|+..++..+..+|... |++++|++.|++..+. .| +...|..|..+|... |++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9986 57788999999999999 9999999999999853 44 577888999999998 999
Q ss_pred HHHHHHHHhhCCCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCcc
Q 044791 431 FEAQQFIEQKLPFEP----TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRL 506 (623)
Q Consensus 431 e~A~~lf~~~m~~~P----d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~ 506 (623)
++|++.|++++.+.| +...|..+..+|...|++++|.+.++...++.+.. ...+..+-..+...
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------------~~a~~~l~~~~~~l 305 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW------------PEPQQREQQLLEFL 305 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHH
Confidence 999999999777666 77899999999999999999999999999987664 33566666666777
Q ss_pred ccccCCcccchHHHHHHH
Q 044791 507 VEFRNPTLYRDDEKLKAL 524 (623)
Q Consensus 507 ~~~~~~~~~~~~eal~~~ 524 (623)
|++ ++|++.+
T Consensus 306 g~~--------~eAi~~~ 315 (474)
T 4abn_A 306 SRL--------TSLLESK 315 (474)
T ss_dssp HHH--------HHHHHHT
T ss_pred HHH--------HHHHHHh
Confidence 766 5666654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-10 Score=115.87 Aligned_cols=190 Identities=11% Similarity=0.047 Sum_probs=121.5
Q ss_pred HHHHHHcCCHHHHHHHHHcCCC--------CC-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 044791 253 LARLCQEGKVKEAIELMDKGVK--------AD-ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIR-GD----LVLNNKV 318 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~~~--------pd-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~y~~L 318 (623)
...|...|++++|++.|++.+. ++ ..+|+.+..+|.+.|++++|+..|++.++.... .+ ..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456777888888877753211 11 356777888888888888888888777653110 01 3567777
Q ss_pred HHHHHHc-CCHHHHHHHHHHhhcC-----C----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH------HHHH
Q 044791 319 IEMYGKC-GSMTDARRVFDHMADR-----S----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE------QTFL 382 (623)
Q Consensus 319 i~~y~k~-g~~~~A~~lf~~m~~~-----~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~------~ty~ 382 (623)
..+|... |++++|+..|++..+. + ..+|+.+...|.+.|++++|+..|++..+....... .+|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 7888875 8888888888776531 1 236777778888888888888888887775433221 1566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCcc------chhhHHHHHH--hcCCHHHHHHHHHhhCCCCC
Q 044791 383 AVFSACGSADAIEEAFIHFESMKSEFGISPGTE------HYLGLVGVLG--KCGHLFEAQQFIEQKLPFEP 445 (623)
Q Consensus 383 ~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~------ty~~Li~~~~--k~g~~e~A~~lf~~~m~~~P 445 (623)
.+..++...|++++|+..|++.. .+.|+.. .+..|+.+|. ..+++++|+..|++++.+.|
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQ---SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGG---CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH---hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 67777777888888888887766 3444321 2333455554 35678888888877444444
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=7.7e-10 Score=113.44 Aligned_cols=215 Identities=10% Similarity=0.088 Sum_probs=164.2
Q ss_pred HHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHH-------HcCCH-------HHHHHHHHcC---
Q 044791 210 PQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLC-------QEGKV-------KEAIELMDKG--- 272 (623)
Q Consensus 210 ~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~l~~~~--- 272 (623)
++|+.+|++... ..|+ ....+..++..+. +.|++ ++|..+|+++
T Consensus 33 ~~a~~~~~~al~--~~p~-----------------~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~ 93 (308)
T 2ond_A 33 KRVMFAYEQCLL--VLGH-----------------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 93 (308)
T ss_dssp HHHHHHHHHHHH--HHTT-----------------CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH--HcCC-----------------CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH
Confidence 688888887732 1111 2233444444443 46886 9999999874
Q ss_pred CCCC-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHhhcCC---hHHH
Q 044791 273 VKAD-ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD-LV-LNNKVIEMYGKCGSMTDARRVFDHMADRS---MDSW 346 (623)
Q Consensus 273 ~~pd-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~-~y~~Li~~y~k~g~~~~A~~lf~~m~~~~---~~ty 346 (623)
+.|+ ...|..++..+.+.|++++|.++|+++++. .|+ .. +|..++..+.+.|++++|+++|++..+.+ ...|
T Consensus 94 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 171 (308)
T 2ond_A 94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 171 (308)
T ss_dssp TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4454 457999999999999999999999999984 443 43 89999999999999999999999987643 3345
Q ss_pred HHHHHHHH-HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC--CccchhhHHHH
Q 044791 347 HLMINGYA-DNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP--GTEHYLGLVGV 423 (623)
Q Consensus 347 n~Li~~~~-~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p--~~~ty~~Li~~ 423 (623)
...+.... ..|++++|..+|++.++... -+...|..++..+.+.|++++|..+|++......+.| ....|..++..
T Consensus 172 ~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~ 250 (308)
T 2ond_A 172 VTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 43333322 26999999999999987632 2678889999999999999999999999996422455 35578888999
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCC
Q 044791 424 LGKCGHLFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 424 ~~k~g~~e~A~~lf~~~m~~~Pd 446 (623)
+.+.|+.++|..++++++...|+
T Consensus 251 ~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 251 ESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHHHHHHccc
Confidence 99999999999999996655554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.5e-09 Score=98.60 Aligned_cols=157 Identities=13% Similarity=0.072 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCC---CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKGVK---ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~~~---pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
.+..+...+...|++++|+++|++.+. .+..++..+..++...|++++|.++++++++.. ..+..++..+...|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 344667778888999999999976443 356778888888889999999999998888763 3467888888888888
Q ss_pred cCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044791 325 CGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHF 401 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~ 401 (623)
.|++++|+++|+++.+ .+...|..+...+...|++++|+.+|+++.+.. ..+..++..+...+...|++++|.+.+
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998888764 355678888888888899999999888888764 235677888888888888888888888
Q ss_pred HHHHh
Q 044791 402 ESMKS 406 (623)
Q Consensus 402 ~~m~~ 406 (623)
+.+..
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88774
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-09 Score=101.25 Aligned_cols=164 Identities=15% Similarity=0.068 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG 389 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~ 389 (623)
..|..+...+...|++++|+++|+++.+. +...|..+...+...|++++|..+|+++.+.. ..+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44555666666666666666666666542 34466666666666777777777776666542 224556666666666
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHH
Q 044791 390 SADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDH 468 (623)
Q Consensus 390 ~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~ 468 (623)
..|++++|.++++++... ...+...+..+..+|.+.|++++|.++|++++...| +...+..+...+...|+.++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 677777777777666643 122445566666667777777777777776444333 45666677777777777777777
Q ss_pred HHHHHHhcCCC
Q 044791 469 AEELMVDLDPS 479 (623)
Q Consensus 469 ~~~~~~~m~~~ 479 (623)
.++.+.++.+.
T Consensus 166 ~~~~~~~~~~~ 176 (186)
T 3as5_A 166 HFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHcCCC
Confidence 77776665544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.5e-09 Score=111.59 Aligned_cols=221 Identities=12% Similarity=0.026 Sum_probs=172.7
Q ss_pred HHHHHcCCHHHHHHHHHcCCC-----CC----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CC---C-CHHHHHHH
Q 044791 254 ARLCQEGKVKEAIELMDKGVK-----AD----ASCFYTLFELCGNPKWYENAKKVHDYFLQST--IR---G-DLVLNNKV 318 (623)
Q Consensus 254 ~~~~~~g~~~~A~~l~~~~~~-----pd----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g--~~---p-d~~~y~~L 318 (623)
..+...|++++|++.|++.+. +| ..++..+..+|...|+++.|+..+.+.++.- .. + ...+++.|
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 345689999999999975322 33 3578889999999999999999999887641 11 1 25688899
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcC-----C----hHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 044791 319 IEMYGKCGSMTDARRVFDHMADR-----S----MDSWHLMINGYADNGLGDEGLQLFEQMRK-----LGLQPNEQTFLAV 384 (623)
Q Consensus 319 i~~y~k~g~~~~A~~lf~~m~~~-----~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~-----~g~~Pd~~ty~~l 384 (623)
..+|...|++++|++.|++..+. + ..+++.|...|...|++++|+..|++..+ .... ...++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHH
Confidence 99999999999999999887641 2 23789999999999999999999999986 3222 36788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCC---ccchhhHHHHHHhcCC---HHHHHHHHHhhCCCCCCH-HHHHHHHHHH
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFGISPG---TEHYLGLVGVLGKCGH---LFEAQQFIEQKLPFEPTA-EFWEALRNYA 457 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g~~p~---~~ty~~Li~~~~k~g~---~e~A~~lf~~~m~~~Pd~-~ty~~Li~a~ 457 (623)
..++.+.|++++|...+++..+-..-..+ ...+..|...|...|+ +++|+.++++ ....++. ..+..|...|
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHH
Confidence 99999999999999999998864222112 2345556666777888 9999999999 5544433 4666788899
Q ss_pred HHcCChhHHHHHHHHHHhc
Q 044791 458 RIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~m 476 (623)
...|+.++|...++...++
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999988887664
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.1e-10 Score=128.45 Aligned_cols=161 Identities=14% Similarity=0.182 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSA 387 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a 387 (623)
..+|+.|..+|.+.|++++|++.|++..+ .+..+|+.|..+|.+.|++++|+..|++.++. .| +..+|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34555555555555555555555554443 12335555555555555555555555555543 22 24455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhH
Q 044791 388 CGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-AEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~~~~ 465 (623)
|.+.|++++|++.|++..+ +.| +...|+.|..+|.+.|++++|++.|++++++.|+ ...|..|..+|...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 5555555555555555552 233 2445555555666666666666666655554443 3455556666666666666
Q ss_pred HHHHHHHHHhcC
Q 044791 466 EDHAEELMVDLD 477 (623)
Q Consensus 466 A~~~~~~~~~m~ 477 (623)
|.+.++.+.++.
T Consensus 164 A~~~~~kal~l~ 175 (723)
T 4gyw_A 164 YDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 665555555443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-08 Score=105.90 Aligned_cols=262 Identities=10% Similarity=-0.056 Sum_probs=183.5
Q ss_pred HHHHHHHcCCHHHHHHHHHc---CCCC-CH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHH
Q 044791 252 DLARLCQEGKVKEAIELMDK---GVKA-DA----SCFYTLFELCGNPKWYENAKKVHDYFLQSTI-RGD----LVLNNKV 318 (623)
Q Consensus 252 li~~~~~~g~~~~A~~l~~~---~~~p-d~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~y~~L 318 (623)
+...+...|++++|+.++++ .... +. .+++.+..++...|++++|.+.+++.++..- ..+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34456689999999999864 2222 22 2567777888899999999999998876311 112 2446778
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcC-----C------hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC----CHHHHHH
Q 044791 319 IEMYGKCGSMTDARRVFDHMADR-----S------MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP----NEQTFLA 383 (623)
Q Consensus 319 i~~y~k~g~~~~A~~lf~~m~~~-----~------~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P----d~~ty~~ 383 (623)
...+...|++++|+..|++..+. + ..++..+...+...|++++|..++++..+..-.. ...+|..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 88999999999999999987541 1 2267778889999999999999999988653221 2467888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchh-----hHHHHHHhcCCHHHHHHHHHhhCCCCCC-----HHHHHHH
Q 044791 384 VFSACGSADAIEEAFIHFESMKSEFGISPGTEHYL-----GLVGVLGKCGHLFEAQQFIEQKLPFEPT-----AEFWEAL 453 (623)
Q Consensus 384 li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~-----~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-----~~ty~~L 453 (623)
+...+...|++++|...+++......-......+. .++..+...|++++|..++++++...+. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 88889999999999999998875311111111122 2334477899999999999995543332 3456778
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCch-hhHHHHhhhcCccccccCCcccchHHHHHHHHHHH
Q 044791 454 RNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKK-RTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMK 528 (623)
Q Consensus 454 i~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~-~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~ 528 (623)
...+...|+.++|...++...+....... ..+. ..+..+-..+...|++ ++|...|++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~--------~~A~~~l~~al 320 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRL-------MSDLNRNLLLLNQLYWQAGRK--------SDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHHTCH--------HHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcc-------hhhHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHH
Confidence 88999999999999988887665333111 0112 2344445556677776 68888875543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.6e-09 Score=103.72 Aligned_cols=140 Identities=8% Similarity=-0.024 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcCC---C-CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKGV---K-ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMY 322 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~~---~-pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y 322 (623)
..+..+...+...|++++|++.|++.+ . ++...+..+..++...|++++|++.|++.++... -+..+|..+..+|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHHH
Confidence 344445555556666666666654311 1 4444554555556666666666666666555321 1345555566666
Q ss_pred HHcCCHHHHHHHHHHhhcC---Ch-------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHH
Q 044791 323 GKCGSMTDARRVFDHMADR---SM-------DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN---EQTFLAVFSACG 389 (623)
Q Consensus 323 ~k~g~~~~A~~lf~~m~~~---~~-------~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd---~~ty~~li~a~~ 389 (623)
.+.|++++|+..|++..+. +. ..|..+...+...|++++|+..|++.++. .|+ ...|..+..+|.
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHH
Confidence 6666666666666555431 22 23555555555566666666666655543 343 234444444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-09 Score=110.59 Aligned_cols=202 Identities=10% Similarity=0.005 Sum_probs=147.6
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 044791 261 KVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQS----TIRGD-LVLNNKVIEMYGKCGSMTDARRVF 335 (623)
Q Consensus 261 ~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~~y~~Li~~y~k~g~~~~A~~lf 335 (623)
++++|.+.|++. +.+|...|++++|.+.|.+.++. |-.++ ..+|+.+..+|.+.|++++|+..|
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 488888877653 56778899999999999988764 32222 578999999999999999999999
Q ss_pred HHhhcC-----C----hHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHH
Q 044791 336 DHMADR-----S----MDSWHLMINGYADN-GLGDEGLQLFEQMRKLGLQP-N----EQTFLAVFSACGSADAIEEAFIH 400 (623)
Q Consensus 336 ~~m~~~-----~----~~tyn~Li~~~~~~-g~~eeA~~l~~eM~~~g~~P-d----~~ty~~li~a~~~~g~~e~A~~l 400 (623)
++..+. + ..+|+.+...|... |++++|+..|++.++....- + ..+|+.+...+...|++++|+.+
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 987642 2 34899999999996 99999999999988642111 1 35788999999999999999999
Q ss_pred HHHHHhhcCCCCCcc------chhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHH------HHHHHHHHHHHcCChhHHHH
Q 044791 401 FESMKSEFGISPGTE------HYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAE------FWEALRNYARIHGDIDLEDH 468 (623)
Q Consensus 401 ~~~m~~~~g~~p~~~------ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~------ty~~Li~a~~~~g~~~~A~~ 468 (623)
|++.... ....... .|..+..+|...|++++|+..|++++.+.|+.. .+..|+.+| ..++.+...+
T Consensus 181 ~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~-~~~~~~~~~~ 258 (292)
T 1qqe_A 181 YSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV-NEGDSEQLSE 258 (292)
T ss_dssp HHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHH-HTTCTTTHHH
T ss_pred HHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HcCCHHHHHH
Confidence 9999854 2221111 466778889999999999999999777777542 234455555 3455444445
Q ss_pred HHHHHHh
Q 044791 469 AEELMVD 475 (623)
Q Consensus 469 ~~~~~~~ 475 (623)
+++.+..
T Consensus 259 A~~~~~~ 265 (292)
T 1qqe_A 259 HCKEFDN 265 (292)
T ss_dssp HHHHHTT
T ss_pred HHHHhcc
Confidence 5555433
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.7e-09 Score=102.64 Aligned_cols=195 Identities=15% Similarity=0.090 Sum_probs=148.1
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHH
Q 044791 275 ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMIN 351 (623)
Q Consensus 275 pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~ 351 (623)
.|...+..+...+...|++++|++.|++.++....++..++..+..+|.+.|++++|++.|++..+. +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4667888899999999999999999999998754367788888999999999999999999988754 3448899999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC---ccchhhHH
Q 044791 352 GYADNGLGDEGLQLFEQMRKLGLQPNE-------QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG---TEHYLGLV 421 (623)
Q Consensus 352 ~~~~~g~~eeA~~l~~eM~~~g~~Pd~-------~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~---~~ty~~Li 421 (623)
.|...|++++|+..|++..+.... +. .+|..+...+...|++++|++.|++.. .+.|+ ...|..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 999999999999999999886322 33 457778888889999999999999888 44565 45667777
Q ss_pred HHHHhcCCHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 422 GVLGKCGHLFEAQQFIEQKLPF-EPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 422 ~~~~k~g~~e~A~~lf~~~m~~-~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
.+|...|+. +++++..+ ..+...|..+.. ...+.+++|...++...++.|++
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCC
Confidence 777655543 33331111 223445544443 34566899999999999988764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.09 E-value=4.1e-10 Score=111.54 Aligned_cols=199 Identities=12% Similarity=0.083 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--------
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQS------TIRG-DLVLNNKVIEMYGKCGSMTDARRVFDHMADR-------- 341 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~------g~~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-------- 341 (623)
..++..+..++...|++++|+++++++++. +-.+ ...++..+..+|...|++++|+++|++..+.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 467889999999999999999999998865 2222 3678899999999999999999999987642
Q ss_pred C---hHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---
Q 044791 342 S---MDSWHLMINGYADNGLGDEGLQLFEQMRKL------GLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEF--- 408 (623)
Q Consensus 342 ~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~------g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~--- 408 (623)
+ ..+|..+...|...|++++|+.+|+++.+. +-.| ...++..+..+|...|++++|..+|+++.+..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1 338999999999999999999999999875 2133 35688889999999999999999999988531
Q ss_pred ---CCCCCcc-chhhHHHHHHhc------CCHHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 409 ---GISPGTE-HYLGLVGVLGKC------GHLFEAQQFIEQKLP-FEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 409 ---g~~p~~~-ty~~Li~~~~k~------g~~e~A~~lf~~~m~-~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
...+... .|..+...+... ..+.++..+++. +. ..| ...++..|...|...|++++|...++...++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA-CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------C-CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1222222 233333233222 235555555655 33 223 3367888999999999999999999988765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.6e-09 Score=108.71 Aligned_cols=257 Identities=9% Similarity=-0.022 Sum_probs=181.4
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCC-----CCH--
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVK-----ADA-- 277 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~-----pd~-- 277 (623)
..|++++|+..+++..... |..... .....++.+...+...|++++|++.+++.+. .+.
T Consensus 26 ~~g~~~~A~~~~~~al~~~--~~~~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEEL--PPGWFY------------SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTC--CTTCHH------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHHHHHHHcC--CCCchh------------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence 6899999999999873311 110000 0112345666778899999999999864221 222
Q ss_pred --HHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-------
Q 044791 278 --SCFYTLFELCGNPKWYENAKKVHDYFLQS----TIR--G-DLVLNNKVIEMYGKCGSMTDARRVFDHMADR------- 341 (623)
Q Consensus 278 --~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~--p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~------- 341 (623)
.++..+...+...|++++|++.+++.++. +.. | ...++..+..+|...|++++|+.++++..+.
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 34677888899999999999999988763 222 2 2456778889999999999999999987531
Q ss_pred -ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-
Q 044791 342 -SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN--EQTFL----AVFSACGSADAIEEAFIHFESMKSEFGISPG- 413 (623)
Q Consensus 342 -~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd--~~ty~----~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~- 413 (623)
...+|..+...+...|++++|..++++.....-.++ ..... ..+..+...|++++|...+++.... .....
T Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~ 250 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNH 250 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcch
Confidence 124788899999999999999999999876422211 11111 2334477899999999999887742 21111
Q ss_pred --ccchhhHHHHHHhcCCHHHHHHHHHhhCCC------CCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 414 --TEHYLGLVGVLGKCGHLFEAQQFIEQKLPF------EPTA-EFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 414 --~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~------~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
...+..+..++...|++++|.+++++++.. .++. ..+..+..++...|+.++|...++...++
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 113556778899999999999999884321 1122 25666777889999999999888887765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-09 Score=123.98 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGY 353 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~ 353 (623)
..+|+.|..++.+.|++++|++.|++.++.. +-+..+|..|..+|.+.|++++|++.|++..+ .+...|+.|..+|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3467777777777777777777777777742 22467777777777777777777777776654 2345777777777
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHH
Q 044791 354 ADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 354 ~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e 431 (623)
.+.|++++|++.|++.++. .| +..+|+.+..+|.+.|++++|++.|++..+ +.| +...|..|..+|...|+++
T Consensus 88 ~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~---l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALK---LKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHhhhhhHHHhcccHH
Confidence 7777777777777777765 33 456777777777777777777777777763 344 3556777777777777777
Q ss_pred HHHHHHHh
Q 044791 432 EAQQFIEQ 439 (623)
Q Consensus 432 ~A~~lf~~ 439 (623)
+|.+.|++
T Consensus 163 ~A~~~~~k 170 (723)
T 4gyw_A 163 DYDERMKK 170 (723)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 77777766
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-09 Score=107.52 Aligned_cols=195 Identities=14% Similarity=0.116 Sum_probs=138.3
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHcCC----------CC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------C
Q 044791 245 VLPPSVADLARLCQEGKVKEAIELMDKGV----------KA-DASCFYTLFELCGNPKWYENAKKVHDYFLQS------T 307 (623)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~----------~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~------g 307 (623)
....+..+...|...|++++|+.+|++.+ .| ...++..+..++...|++++|+++++++++. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 44566788889999999999999996422 22 2457899999999999999999999998875 1
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--------C---hHHHHHHHHHHHHcCChHHHHHHHHHHHHc---
Q 044791 308 I-RGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR--------S---MDSWHLMINGYADNGLGDEGLQLFEQMRKL--- 372 (623)
Q Consensus 308 ~-~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~--------~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~--- 372 (623)
- .....++..+..+|...|++++|+.+|+++.+. + ..+|..+...|...|++++|+.+|+++.+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223678899999999999999999999988653 3 337899999999999999999999999864
Q ss_pred ----CCCCCH-HHHHHHHHHHHhcCC------HHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhh
Q 044791 373 ----GLQPNE-QTFLAVFSACGSADA------IEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQK 440 (623)
Q Consensus 373 ----g~~Pd~-~ty~~li~a~~~~g~------~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~ 440 (623)
...+.. ..+..+...+...+. +..+...++.+. ...+ ...++..|..+|.+.|++++|..+|+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK---VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 122222 233333333333222 233333332221 1112 3456888999999999999999999985
Q ss_pred CC
Q 044791 441 LP 442 (623)
Q Consensus 441 m~ 442 (623)
+.
T Consensus 279 l~ 280 (283)
T 3edt_B 279 SR 280 (283)
T ss_dssp HT
T ss_pred HH
Confidence 54
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-09 Score=113.21 Aligned_cols=220 Identities=10% Similarity=-0.034 Sum_probs=165.1
Q ss_pred cCCChHHHHHHHHHhcCCC-CCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCC-----C---
Q 044791 205 QNQGYPQARNSYQQVSPGH-QIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVK-----A--- 275 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~-----p--- 275 (623)
..|++++|++.|++..... ..++. ......+..+...|...|++++|+..+++.+. .
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~--------------~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDR--------------IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCH--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 7899999999999884310 01110 01234566788899999999999999864211 1
Q ss_pred --CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhc-----CC-
Q 044791 276 --DASCFYTLFELCGNPKWYENAKKVHDYFLQSTI-RGD----LVLNNKVIEMYGKCGSMTDARRVFDHMAD-----RS- 342 (623)
Q Consensus 276 --d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~y~~Li~~y~k~g~~~~A~~lf~~m~~-----~~- 342 (623)
...+++.+..+|...|++++|++.|++.++..- ..+ ..++..|..+|...|++++|++.|++..+ .+
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 235788999999999999999999999876411 112 35888999999999999999999998865 33
Q ss_pred ---hHHHHHHHHHHHHcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcCCCC
Q 044791 343 ---MDSWHLMINGYADNGLGDEGLQLFEQMRKLG----LQPNEQTFLAVFSACGSADA---IEEAFIHFESMKSEFGISP 412 (623)
Q Consensus 343 ---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g----~~Pd~~ty~~li~a~~~~g~---~e~A~~l~~~m~~~~g~~p 412 (623)
..++..+...|.+.|++++|...|++..+.. -......+..+...+...|+ +++|+.+++... ....
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~ 337 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYAD 337 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHH
Confidence 2379999999999999999999999987531 11122345677778888999 788888887653 2222
Q ss_pred CccchhhHHHHHHhcCCHHHHHHHHHhhC
Q 044791 413 GTEHYLGLVGVLGKCGHLFEAQQFIEQKL 441 (623)
Q Consensus 413 ~~~ty~~Li~~~~k~g~~e~A~~lf~~~m 441 (623)
....+..|...|.+.|++++|.+.|++++
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34567788999999999999999999843
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.4e-09 Score=109.06 Aligned_cols=220 Identities=11% Similarity=0.057 Sum_probs=163.7
Q ss_pred cCCChHHHHHHHHHhcCCC-CCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCC---------C
Q 044791 205 QNQGYPQARNSYQQVSPGH-QIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGV---------K 274 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~---------~ 274 (623)
..|++++|+..|++..... ..++ .......+..+...|...|++++|+..+++.+ .
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSD--------------DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCC--------------hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 7899999999999874311 1111 01123456678888999999999999886411 1
Q ss_pred C-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-----CC-
Q 044791 275 A-DASCFYTLFELCGNPKWYENAKKVHDYFLQS----TIR-GDLVLNNKVIEMYGKCGSMTDARRVFDHMAD-----RS- 342 (623)
Q Consensus 275 p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~-pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~-----~~- 342 (623)
+ ...+++.+..+|...|++++|++.|++.++. |-. ....++..|..+|...|++++|++.|++..+ .+
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 1 2457889999999999999999999988763 211 1246788999999999999999999998765 32
Q ss_pred --hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---C-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcCCCCC
Q 044791 343 --MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ---P-NEQTFLAVFSACGSADA---IEEAFIHFESMKSEFGISPG 413 (623)
Q Consensus 343 --~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~---P-d~~ty~~li~a~~~~g~---~e~A~~l~~~m~~~~g~~p~ 413 (623)
..++..+...|.+.|++++|+..|++..+..-. + ....+..+...+...++ +++|+.+++... .....
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~ 335 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYI 335 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHH
Confidence 347888999999999999999999999875321 2 23456666666777888 888888877632 11122
Q ss_pred ccchhhHHHHHHhcCCHHHHHHHHHhhC
Q 044791 414 TEHYLGLVGVLGKCGHLFEAQQFIEQKL 441 (623)
Q Consensus 414 ~~ty~~Li~~~~k~g~~e~A~~lf~~~m 441 (623)
...+..|...|.+.|++++|.+.|++++
T Consensus 336 ~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 336 EACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3466778899999999999999999843
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-09 Score=109.37 Aligned_cols=196 Identities=12% Similarity=-0.039 Sum_probs=128.9
Q ss_pred cCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHHHHHH
Q 044791 259 EGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIR-GD----LVLNNKVIEMYGKCGSMTDARR 333 (623)
Q Consensus 259 ~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~y~~Li~~y~k~g~~~~A~~ 333 (623)
.+++++|.++|.+ ++..|...|++++|.+.|.+..+.... .+ ..+|+.+..+|.+.|++++|+.
T Consensus 29 ~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3567777666543 355666778888888887776653110 01 4577778888888888888888
Q ss_pred HHHHhhcC-----C----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHH
Q 044791 334 VFDHMADR-----S----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-----NEQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 334 lf~~m~~~-----~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-----d~~ty~~li~a~~~~g~~e~A~~ 399 (623)
.|++..+. + ..+|+.+...|.. |++++|+..|++.++..... ...+++.+...|.+.|++++|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88765431 1 2367777788877 88888888888876531111 14577788888888999999998
Q ss_pred HHHHHHhhcCCCCC----ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHHcCChhHHHH
Q 044791 400 HFESMKSEFGISPG----TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA------EFWEALRNYARIHGDIDLEDH 468 (623)
Q Consensus 400 l~~~m~~~~g~~p~----~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~------~ty~~Li~a~~~~g~~~~A~~ 468 (623)
.|++......-..+ ..++..++.++...|++++|...|++++ ..|+. .....++.++ ..|+.+.+..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 88887753111111 2255666677777899999999999977 66642 2344455555 5677664444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.1e-08 Score=110.73 Aligned_cols=214 Identities=10% Similarity=0.106 Sum_probs=166.8
Q ss_pred HHHHHHHHcCCC--C-CHHHHHHHHHHHhC-------CCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044791 263 KEAIELMDKGVK--A-DASCFYTLFELCGN-------PKWYE-------NAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 263 ~~A~~l~~~~~~--p-d~~ty~~Ll~~~~~-------~g~~~-------~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~ 325 (623)
++|+.+|++.+. | +...|..++..+.+ .|+++ +|.++|++.++.-.+-+...|..++..+.+.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 366777765332 3 56678877777764 79987 8999999998632334689999999999999
Q ss_pred CCHHHHHHHHHHhhcC---Ch-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHH
Q 044791 326 GSMTDARRVFDHMADR---SM-DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFS-ACGSADAIEEAFIH 400 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~---~~-~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~-a~~~~g~~e~A~~l 400 (623)
|++++|..+|+++.+. +. ..|..++..+.+.|++++|..+|++..+.... +...|...+. .+...|+.++|..+
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHH
Confidence 9999999999998753 32 47999999999999999999999999875321 2233332222 23468999999999
Q ss_pred HHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCC---CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 401 FESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPF---EP--TAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 401 ~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~---~P--d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
|+...+.. .-+...|..+++.+.+.|+.++|..+|++++.. .| ....|...+......|+.+.+..+.+++.+
T Consensus 414 ~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 414 FELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99988652 225678899999999999999999999996543 23 245888889988999999999999999998
Q ss_pred cCCC
Q 044791 476 LDPS 479 (623)
Q Consensus 476 m~~~ 479 (623)
..+.
T Consensus 492 ~~p~ 495 (530)
T 2ooe_A 492 AFRE 495 (530)
T ss_dssp HTHH
T ss_pred HCch
Confidence 8764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3e-08 Score=85.85 Aligned_cols=124 Identities=17% Similarity=0.206 Sum_probs=63.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHc
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADN 356 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~ 356 (623)
|..+...+...|++++|+++++++.+.. ..+..++..+...+...|++++|+.+|+++.+ .+...|..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4455555555555555555555555542 12445555555555555555555555555432 2233455555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 357 GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 357 g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
|++++|+.+|+++.+... .+..++..+...+...|++++|...|+++.
T Consensus 83 ~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 555555555555554321 134444455555555555555555555544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.89 E-value=7.7e-08 Score=83.25 Aligned_cols=126 Identities=18% Similarity=0.253 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS 390 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~ 390 (623)
.|..+...|...|++++|+.+|+++.+ .+...|..+...+...|++++|..+|+++.+.+ ..+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 466677777778888888888877654 345567777777778888888888888877653 2245667777777778
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 391 ADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 391 ~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
.|++++|..+++++... . ..+..++..+..+|.+.|++++|..+|++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh-C-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 88888888888777743 1 22455667777778888888888888777433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.3e-08 Score=104.58 Aligned_cols=241 Identities=13% Similarity=0.066 Sum_probs=144.0
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCH---HHHHHHHHcCCCCCHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKV---KEAIELMDKGVKADASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~~~~pd~~ty~ 281 (623)
+.|++++|+++|++....+. ++... .|...|...|+. ++|++.|++.+..+...+.
T Consensus 15 ~~g~~~~A~~~~~~aa~~g~-~~A~~--------------------~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~ 73 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELGY-SEAQV--------------------GLADIQVGTRDPAQIKQAEATYRAAADTSPRAQA 73 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-CTGGG--------------------TCC----------------------------CHH
T ss_pred hCCCHHHHHHHHHHHHHCCC-HHHHH--------------------HHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHH
Confidence 67999999999998844221 11111 112223445556 7888888765555666666
Q ss_pred HHHHHHhCCC-----CHHHHHHHHHHHHHcCCCC--------------------------------CHHHHHHHHHHHHH
Q 044791 282 TLFELCGNPK-----WYENAKKVHDYFLQSTIRG--------------------------------DLVLNNKVIEMYGK 324 (623)
Q Consensus 282 ~Ll~~~~~~g-----~~~~A~~l~~~m~~~g~~p--------------------------------d~~~y~~Li~~y~k 324 (623)
.|...+...+ +.++|+++|++..+.|... +...+..|...|..
T Consensus 74 ~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 74 RLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRT 153 (452)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 6766554444 6778888888777765321 11122223333333
Q ss_pred cC----CHHHHHHHHHHhhcCChHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CC
Q 044791 325 CG----SMTDARRVFDHMADRSMDSWHLMINGYADNG---LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA----DA 393 (623)
Q Consensus 325 ~g----~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g---~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~----g~ 393 (623)
.+ ..++|..+++.....+...+..|...|...| ++++|+..|++..+.|. ++...+..|...|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCC
Confidence 33 3455556666666667778889999999999 89999999999998874 3555556666666554 78
Q ss_pred HHHHHHHHHHHHhhcCCCCCccchhhHHHH-H--HhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-----ChhH
Q 044791 394 IEEAFIHFESMKSEFGISPGTEHYLGLVGV-L--GKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHG-----DIDL 465 (623)
Q Consensus 394 ~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~-~--~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g-----~~~~ 465 (623)
+++|++.|+... . | +...+..|..+ | ...|+.++|+++|+++.. .-+...+..|...|. .| +.++
T Consensus 233 ~~~A~~~~~~aa-~-g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 233 EKTAQALLEKIA-P-G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-ADQPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHHG-G-G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHHc-C-C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 999999998876 2 2 45566677776 4 468899999999998554 336777777877776 56 7886
Q ss_pred HHHHHHHHH
Q 044791 466 EDHAEELMV 474 (623)
Q Consensus 466 A~~~~~~~~ 474 (623)
|.+.++...
T Consensus 306 A~~~~~~Aa 314 (452)
T 3e4b_A 306 AEAHFEKAV 314 (452)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHHh
Confidence 666666544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.85 E-value=8.1e-08 Score=92.42 Aligned_cols=134 Identities=10% Similarity=0.038 Sum_probs=94.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC
Q 044791 317 KVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSAD 392 (623)
Q Consensus 317 ~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g 392 (623)
.+..+|.+.|++++|+..|++..+ .+...|..+...|...|++++|+..|++.++. .| +..+|..+..+|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 388888899999999999988765 35568888999999999999999999998886 34 5677888877776655
Q ss_pred C--HHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 044791 393 A--IEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRN 455 (623)
Q Consensus 393 ~--~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~ 455 (623)
+ .+.+...+.... ...|....+..+..++...|++++|+..|++++.+.|+......|.+
T Consensus 137 ~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 137 EQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4 334444454433 22222223334455667788999999999998888898765554443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.6e-08 Score=111.16 Aligned_cols=185 Identities=12% Similarity=-0.013 Sum_probs=150.9
Q ss_pred hCCCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHc
Q 044791 288 GNPKWYENAKKVHDYFL--------QSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADN 356 (623)
Q Consensus 288 ~~~g~~~~A~~l~~~m~--------~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~ 356 (623)
...|++++|++.+++.+ +. ...+...+..+..+|.+.|++++|++.|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999998 43 234578899999999999999999999998875 4667999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHH
Q 044791 357 GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQ 435 (623)
Q Consensus 357 g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~ 435 (623)
|++++|+..|++.++.... +...|..+..++.+.|++++ ++.|++..+. .| +...|..+..+|.+.|++++|++
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999986322 56788899999999999999 9999998843 45 56788899999999999999999
Q ss_pred HHHhhCCCCCCH-HHHHHHHHHHHHcCC-----hhHHHHHHHHHHhcCC
Q 044791 436 FIEQKLPFEPTA-EFWEALRNYARIHGD-----IDLEDHAEELMVDLDP 478 (623)
Q Consensus 436 lf~~~m~~~Pd~-~ty~~Li~a~~~~g~-----~~~A~~~~~~~~~m~~ 478 (623)
.|++++...|+. ..|..+..++...|+ .+...++.+.+..+..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 604 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPP 604 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCT
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCC
Confidence 999988888874 677777777766665 3555566776766543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.82 E-value=9.4e-08 Score=97.71 Aligned_cols=213 Identities=14% Similarity=0.103 Sum_probs=154.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTD 330 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~ 330 (623)
-+..+|...|+++.+. .-.|....+..+...+. .+ |++.|+++++.+ .++..++..+..+|...|++++
T Consensus 50 ~~~Rs~iAlg~~~~~~-----~~~~~~~a~~~la~~~~-~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~ee 118 (310)
T 3mv2_B 50 YKAKTLLALGQYQSQD-----PTSKLGKVLDLYVQFLD-TK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDK 118 (310)
T ss_dssp HHHHHHHHTTCCCCCC-----SSSTTHHHHHHHHHHHT-TT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHcCCCccCC-----CCCHHHHHHHHHHHHhc-cc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 4567888888876421 22344445555444443 22 778888887765 4566666788999999999999
Q ss_pred HHHHHHHhhcC-----ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHh--cC--CHHH
Q 044791 331 ARRVFDHMADR-----SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-----NEQTFLAVFSACGS--AD--AIEE 396 (623)
Q Consensus 331 A~~lf~~m~~~-----~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-----d~~ty~~li~a~~~--~g--~~e~ 396 (623)
|++++.+.... +...+-.++..+.+.|+.++|.++|++|.+. .| +..+...|+.++.. .| +..+
T Consensus 119 AL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~ 196 (310)
T 3mv2_B 119 SLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATS 196 (310)
T ss_dssp HHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTH
T ss_pred HHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHH
Confidence 99999988554 3458889999999999999999999999875 56 35666666666332 34 8999
Q ss_pred HHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCC----------CC-CHHHHHHHHHHHHHcCChhH
Q 044791 397 AFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPF----------EP-TAEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 397 A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~----------~P-d~~ty~~Li~a~~~~g~~~~ 465 (623)
|..+|+++..+ .|+..+-..|+.++.+.|++++|++.++.+... .| |..+.-.+|......|+ +
T Consensus 197 A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~ 271 (310)
T 3mv2_B 197 NFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--D 271 (310)
T ss_dssp HHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--T
T ss_pred HHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--H
Confidence 99999998754 344334455666899999999999999873332 24 55677567666666786 6
Q ss_pred HHHHHHHHHhcCCCCC
Q 044791 466 EDHAEELMVDLDPSKA 481 (623)
Q Consensus 466 A~~~~~~~~~m~~~~~ 481 (623)
|.+.++.+.+..|++.
T Consensus 272 a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 272 TEDLTNQLVKLDHEHA 287 (310)
T ss_dssp THHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHhCCCCh
Confidence 7899999999887753
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-07 Score=93.82 Aligned_cols=182 Identities=8% Similarity=-0.058 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----C-hHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD---LVLNNKVIEMYGKCGSMTDARRVFDHMADR-----S-MDSWH 347 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-----~-~~tyn 347 (623)
...+-.+...+.+.|++++|++.|+++++... -+ ..++..+..+|.+.|++++|+..|++..+. . ...|.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 44555555666666666666666666655421 12 455556666666666666666666665432 1 12455
Q ss_pred HHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchh
Q 044791 348 LMINGYAD--------NGLGDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYL 418 (623)
Q Consensus 348 ~Li~~~~~--------~g~~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~ 418 (623)
.+..++.. .|++++|+..|++.++.. |+. .....+ ..+..+... ....+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH-----HHHHHH
Confidence 55555555 666666666666665542 221 111111 000000000 000134
Q ss_pred hHHHHHHhcCCHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHc----------CChhHHHHHHHHHHhcCCCC
Q 044791 419 GLVGVLGKCGHLFEAQQFIEQKLPFEPT----AEFWEALRNYARIH----------GDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 419 ~Li~~~~k~g~~e~A~~lf~~~m~~~Pd----~~ty~~Li~a~~~~----------g~~~~A~~~~~~~~~m~~~~ 480 (623)
.+...|.+.|++++|+..|++++...|+ ...+..+..+|... |++++|...++.+.+..|+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 5677888999999999999986555554 34667777777766 88899999999988877664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.6e-08 Score=96.47 Aligned_cols=185 Identities=15% Similarity=0.093 Sum_probs=116.6
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHcC--CCCC----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CC-CHHHH
Q 044791 244 QVLPPSVADLARLCQEGKVKEAIELMDKG--VKAD----ASCFYTLFELCGNPKWYENAKKVHDYFLQSTI-RG-DLVLN 315 (623)
Q Consensus 244 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~pd----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-~p-d~~~y 315 (623)
.....+..+...+.+.|++++|++.|++- ..|+ ..++..+..++.+.|++++|+..|+++++... .+ ...++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34566777888899999999999999863 2343 56788999999999999999999999998632 12 25677
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHhhcCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044791 316 NKVIEMYGK--------CGSMTDARRVFDHMADRSM---DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV 384 (623)
Q Consensus 316 ~~Li~~y~k--------~g~~~~A~~lf~~m~~~~~---~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~l 384 (623)
..+..+|.+ .|++++|+..|+++.+.+. ..+.++.. +..+... -...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQK--------------IRELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHH--------------HHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHH--------------HHHHHHH----HHHHHHHH
Confidence 888889999 9999999999999875322 22222110 0000000 00113444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhc----------CCHHHHHHHHHhhCCCCCC
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKC----------GHLFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~----------g~~e~A~~lf~~~m~~~Pd 446 (623)
...|.+.|++++|+..|+.+.+...-.+ ....+..+..+|.+. |++++|+..|++++...|+
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 5555666666666666666654311111 122344455555544 6666666666664443443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.1e-08 Score=99.25 Aligned_cols=219 Identities=9% Similarity=-0.026 Sum_probs=148.8
Q ss_pred CCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCCC-----C----
Q 044791 206 NQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKA-----D---- 276 (623)
Q Consensus 206 ~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~p-----d---- 276 (623)
.|++++|.+++++..+.. +.. ++............+......|...|++++|++.|.+.+.. +
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~------~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 75 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS------FMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHA 75 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC------SSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc------ccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 577888988888763311 110 01000011112334556677889999999999998642111 1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----C----
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQS----TIRG-DLVLNNKVIEMYGKCGSMTDARRVFDHMADR-----S---- 342 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-----~---- 342 (623)
..+|+.+..+|.+.|++++|+..|++.++. |-.. -..+++.+..+|.+ |++++|+..|++..+. +
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 357889999999999999999999988764 2111 14678889999988 9999999999987642 1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCcc--
Q 044791 343 MDSWHLMINGYADNGLGDEGLQLFEQMRKL----GLQPN-EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTE-- 415 (623)
Q Consensus 343 ~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~----g~~Pd-~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~-- 415 (623)
..+|+.+...|.+.|++++|+..|++.++. +..+. ..++..++.++...|++++|...|++.. ...-..+..
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~ 233 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDC 233 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHH
Confidence 348999999999999999999999998863 22111 2366777778888899999999999887 311111111
Q ss_pred -chhhHHHHHHhcCCHHHHHH
Q 044791 416 -HYLGLVGVLGKCGHLFEAQQ 435 (623)
Q Consensus 416 -ty~~Li~~~~k~g~~e~A~~ 435 (623)
....++.++ ..|+.+.+.+
T Consensus 234 ~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 234 AALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHH-HhcCHHHHHH
Confidence 233344444 5677666655
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2.7e-07 Score=89.67 Aligned_cols=185 Identities=10% Similarity=0.021 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCh------HHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIR-G-DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSM------DSWHL 348 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~-p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~------~tyn~ 348 (623)
...+..+...+.+.|++++|+..|+++++.... + ....+..+..+|.+.|++++|+..|+++.+.+. .+|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445566667777788888888888888775321 1 135667777888888888888888887764211 14444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCcc-c-----------
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTE-H----------- 416 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~-t----------- 416 (623)
+..++...|.. .++ .|..+...+...|+.++|+..|+++++. .|+.. .
T Consensus 84 ~g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 84 RGLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHH
Confidence 44455442210 000 0111112222344555555555555422 22211 1
Q ss_pred ------hhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC
Q 044791 417 ------YLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA----EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKA 481 (623)
Q Consensus 417 ------y~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~----~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~ 481 (623)
...+...|.+.|++++|+..|++++...|+. ..+..+..+|.+.|+.++|.+.++.+....+.+.
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 1245667889999999999999966666653 4678888999999999999999999988777654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-07 Score=90.43 Aligned_cols=129 Identities=8% Similarity=-0.063 Sum_probs=98.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHH
Q 044791 347 HLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLG 425 (623)
Q Consensus 347 n~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~ 425 (623)
+.+..+|.+.|++++|+..|++.++... -+...+..+..++...|++++|+..|++..+ +.| +..+|..|..+|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHH
Confidence 3488999999999999999999998642 2678899999999999999999999999985 355 4677888888887
Q ss_pred hcCC--HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 426 KCGH--LFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 426 k~g~--~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
..|+ .+++...|+..+...|....+..+..++...|++++|...++...++.|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 6654 55667777773333333334445556677789999999999999887654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-07 Score=109.01 Aligned_cols=177 Identities=10% Similarity=-0.033 Sum_probs=147.3
Q ss_pred HHcCCHHHHHHHHHcCC----------CC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044791 257 CQEGKVKEAIELMDKGV----------KA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~~~----------~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~ 325 (623)
...|++++|++.|++.+ .| +...+..+..++...|++++|++.|+++++.. .-+...|..+..+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999997644 24 45788899999999999999999999999864 33788999999999999
Q ss_pred CCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044791 326 GSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFE 402 (623)
Q Consensus 326 g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~ 402 (623)
|++++|++.|++..+ .+...|..+..+|.+.|++++ +..|++.++.... +...|..+..++.+.|++++|++.|+
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999875 355689999999999999999 9999999986422 56789999999999999999999999
Q ss_pred HHHhhcCCCCC-ccchhhHHHHHHhcC--------CHHHHHHHHHh
Q 044791 403 SMKSEFGISPG-TEHYLGLVGVLGKCG--------HLFEAQQFIEQ 439 (623)
Q Consensus 403 ~m~~~~g~~p~-~~ty~~Li~~~~k~g--------~~e~A~~lf~~ 439 (623)
+.. .+.|+ ...|..+..+|...| ++++|.+.++.
T Consensus 559 ~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~ 601 (681)
T 2pzi_A 559 EVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEA 601 (681)
T ss_dssp TSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHT
T ss_pred hhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhh
Confidence 887 55665 566777777776644 47777777777
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=6.4e-07 Score=85.30 Aligned_cols=124 Identities=8% Similarity=-0.048 Sum_probs=108.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 044791 249 SVADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSM 328 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~ 328 (623)
+..+...+...|++++|++.|++.+.++..+|..+..++.+.|++++|++.|++.++.. ..+..+|..+..+|.+.|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34566778899999999999999888899999999999999999999999999998864 34688999999999999999
Q ss_pred HHHHHHHHHhhcC---C----------------hHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 044791 329 TDARRVFDHMADR---S----------------MDSWHLMINGYADNGLGDEGLQLFEQMRKLG 373 (623)
Q Consensus 329 ~~A~~lf~~m~~~---~----------------~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g 373 (623)
++|++.|++..+. + ...|..+..+|.+.|++++|+..|++..+..
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999988752 1 2588899999999999999999999998753
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-07 Score=94.92 Aligned_cols=190 Identities=12% Similarity=0.071 Sum_probs=138.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHcCC---CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHc
Q 044791 250 VADLARLCQEGKVKEAIELMDKGV---KADASCFYTLFELCGNPKWYENAKKVHDYFLQSTI-RGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 250 ~~li~~~~~~g~~~~A~~l~~~~~---~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~y~~Li~~y~k~ 325 (623)
..++..|...+ |+..|++-+ .++..++..+..++...|++++|++++.+.+..|- .-+...+-.++.+|.+.
T Consensus 74 ~~~la~~~~~~----a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~ 149 (310)
T 3mv2_B 74 LDLYVQFLDTK----NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLN 149 (310)
T ss_dssp HHHHHHHHTTT----CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccc----HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHC
Confidence 34455555533 566666433 46677777888999999999999999999877653 23678888999999999
Q ss_pred CCHHHHHHHHHHhhcCCh-------HHHHHHHHH--HHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044791 326 GSMTDARRVFDHMADRSM-------DSWHLMING--YADNG--LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAI 394 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~~~-------~tyn~Li~~--~~~~g--~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~ 394 (623)
|+.+.|.++|++|.+.+. .+...|+.+ ....| ++.+|+.+|+++.+. .|+..+-..++.++...|++
T Consensus 150 ~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~ 227 (310)
T 3mv2_B 150 NNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNI 227 (310)
T ss_dssp TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCH
Confidence 999999999999976443 455566666 33334 899999999999765 45544445555688999999
Q ss_pred HHHHHHHHHHHhhc----CC---CC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 395 EEAFIHFESMKSEF----GI---SP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 395 e~A~~l~~~m~~~~----g~---~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
++|.+.++.+.+.+ .. .| +..+...+|......|+ +|.++++++....|+-
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 99999999776432 11 23 56666566666666787 8899998844456653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.9e-07 Score=93.39 Aligned_cols=171 Identities=9% Similarity=-0.051 Sum_probs=113.6
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--CChH
Q 044791 267 ELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD--RSMD 344 (623)
Q Consensus 267 ~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--~~~~ 344 (623)
+.++..+..+...+..+...+...|++++|+.+|+++++.. +-+...+..|..+|.+.|++++|+.+|+++.. ++..
T Consensus 107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence 33333333344556677777778888888888888877753 22567777788888888888888888887754 3332
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHH
Q 044791 345 -SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGV 423 (623)
Q Consensus 345 -tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~ 423 (623)
.+..+...+...++.++|+..|++..+... -+...+..+..++...|++++|+..|.++.+...-..+...+..|+..
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 222223336667777778888877776532 245677777777888888888888888777541111124567777777
Q ss_pred HHhcCCHHHHHHHHHh
Q 044791 424 LGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 424 ~~k~g~~e~A~~lf~~ 439 (623)
|...|+.++|...|++
T Consensus 265 ~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 265 LAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHCTTCHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHH
Confidence 7777887777777776
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.8e-07 Score=86.26 Aligned_cols=172 Identities=10% Similarity=-0.023 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-ChHHHHHHHHHHHHcC----ChHHHHHHHHHH
Q 044791 295 NAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR-SMDSWHLMINGYADNG----LGDEGLQLFEQM 369 (623)
Q Consensus 295 ~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-~~~tyn~Li~~~~~~g----~~eeA~~l~~eM 369 (623)
+|++.|++..+.| +...+..|..+|...+++++|++.|++..+. +...+..|...|.. + ++++|+.+|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4556666666654 5566666666666677777777777666543 33456666666655 5 677777777776
Q ss_pred HHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCC---ccchhhHHHHHHh----cCCHHHHHHHHH
Q 044791 370 RKLGLQPNEQTFLAVFSACGS----ADAIEEAFIHFESMKSEFGISPG---TEHYLGLVGVLGK----CGHLFEAQQFIE 438 (623)
Q Consensus 370 ~~~g~~Pd~~ty~~li~a~~~----~g~~e~A~~l~~~m~~~~g~~p~---~~ty~~Li~~~~k----~g~~e~A~~lf~ 438 (623)
.+.| +..++..|...|.. .+++++|++.|++..+. .+. ...+..|..+|.. .++.++|+.+|+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6654 45556666666655 66777777777666532 221 4556666666666 566777777777
Q ss_pred hhCCCCCCHHHHHHHHHHHHHc-C-----ChhHHHHHHHHHHhc
Q 044791 439 QKLPFEPTAEFWEALRNYARIH-G-----DIDLEDHAEELMVDL 476 (623)
Q Consensus 439 ~~m~~~Pd~~ty~~Li~a~~~~-g-----~~~~A~~~~~~~~~m 476 (623)
++.....+...+..|...|... | +.++|...+++..+.
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 7444323444555555555543 2 566666666655553
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.3e-08 Score=90.16 Aligned_cols=140 Identities=8% Similarity=0.021 Sum_probs=75.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMADRSM---DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAI 394 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~~~~---~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~ 394 (623)
|..++...|++++|++.|......+. ..+..|...|.+.|++++|+..|++.++... -+..+|..+..+|...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCch
Confidence 34444455666666666665554322 2444556666666666666666666665421 1455666666666666666
Q ss_pred HHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHH-HHhhCCCCC-CHHHHHHHHHHHHHcC
Q 044791 395 EEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQF-IEQKLPFEP-TAEFWEALRNYARIHG 461 (623)
Q Consensus 395 e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~l-f~~~m~~~P-d~~ty~~Li~a~~~~g 461 (623)
++|+..|+...+ +.| +..+|..|..+|.+.|+.++|.+. +++++.+.| +..+|......+...|
T Consensus 82 ~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVE---LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 666666666653 234 345566666666666666554443 355444445 3344444444444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.1e-07 Score=86.01 Aligned_cols=134 Identities=7% Similarity=-0.061 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD 392 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g 392 (623)
..+..+...+.+.|++++|++.|++...++...|..+...|.+.|++++|+..|++..+.. .-+..+|..+..++...|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 3455667777788888888888888777777788888888888888888888888887753 235677778888888888
Q ss_pred CHHHHHHHHHHHHhhcCCC-------------C-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 393 AIEEAFIHFESMKSEFGIS-------------P-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 393 ~~e~A~~l~~~m~~~~g~~-------------p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
++++|++.|+...+...-. | ....+..+..+|.+.|++++|.+.|++++...|+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8888888888877531111 0 11456667777777777777777777766655643
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-07 Score=87.54 Aligned_cols=57 Identities=5% Similarity=-0.110 Sum_probs=26.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~ 339 (623)
.+...+...|++++|+..|++.++.. +-+...+..+..+|.+.|++++|+..|++..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 67 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIP 67 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 33444444555555555555444321 1134444555555555555555555555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-06 Score=82.42 Aligned_cols=150 Identities=16% Similarity=0.077 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc------C---ChHHHHHHHHHHHHcCCh
Q 044791 289 NPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD------R---SMDSWHLMINGYADNGLG 359 (623)
Q Consensus 289 ~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~------~---~~~tyn~Li~~~~~~g~~ 359 (623)
..|++++|+++++.+... ......++..+...|...|++++|+..|++..+ . ...++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644333221 112355666666666666776666666665543 1 122566666667777777
Q ss_pred HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----ccchhhHHHHHHhcCC
Q 044791 360 DEGLQLFEQMRKL----GLQP--NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG----TEHYLGLVGVLGKCGH 429 (623)
Q Consensus 360 eeA~~l~~eM~~~----g~~P--d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~----~~ty~~Li~~~~k~g~ 429 (623)
++|+..|++..+. +-.+ ...++..+...+...|++++|...+++......-..+ ..++..+..+|...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777666542 1111 1344566666677777777777777666532111111 2234566677777788
Q ss_pred HHHHHHHHHh
Q 044791 430 LFEAQQFIEQ 439 (623)
Q Consensus 430 ~e~A~~lf~~ 439 (623)
+++|.+.|++
T Consensus 163 ~~~A~~~~~~ 172 (203)
T 3gw4_A 163 LLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877777
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.63 E-value=5.8e-06 Score=89.50 Aligned_cols=215 Identities=11% Similarity=0.039 Sum_probs=135.7
Q ss_pred HHHHHHHHcCC----HHHHHHHHHcCCCCCHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 251 ADLARLCQEGK----VKEAIELMDKGVKADASCFYTLFELCGNPK---WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG 323 (623)
Q Consensus 251 ~li~~~~~~g~----~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~ 323 (623)
.|...|...+. .++|..+++.....+..++..|...|.+.| +.++|++.|++..+.|. ++...+..|..+|.
T Consensus 146 ~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~ 224 (452)
T 3e4b_A 146 AQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLG 224 (452)
T ss_dssp HHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh
Confidence 44444545453 333444444433333447777777777777 78888888888877763 35565566777775
Q ss_pred Hc----CCHHHHHHHHHHhhcCChHHHHHHHHH-H--HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----
Q 044791 324 KC----GSMTDARRVFDHMADRSMDSWHLMING-Y--ADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD---- 392 (623)
Q Consensus 324 k~----g~~~~A~~lf~~m~~~~~~tyn~Li~~-~--~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g---- 392 (623)
.. ++.++|++.|++....+...+..|... | ...+++++|+..|++..+.| +...+..|...|. .|
T Consensus 225 ~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 225 DATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp CGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSC
T ss_pred CCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCC
Confidence 54 678888888887773344566666666 3 45778888888888887766 5666666666665 44
Q ss_pred -CHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHh----cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCh
Q 044791 393 -AIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGK----CGHLFEAQQFIEQKLPFEPTAEFWEALRNYARI----HGDI 463 (623)
Q Consensus 393 -~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k----~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~----~g~~ 463 (623)
++++|++.|++.. . -+...+..|..+|.. ..+.++|..+|+++.. .-+...+..|...|.. ..+.
T Consensus 301 ~d~~~A~~~~~~Aa-~----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-~g~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-G----REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-NGQNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CCHHHHHHHHHTTT-T----TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-TTCTTHHHHHHHHHHSCTTBCCCH
T ss_pred CCHHHHHHHHHHHh-C----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-hChHHHHHHHHHHHHhCCCCCCCH
Confidence 7888888887655 2 245556666666665 3378888888887443 2233444455555542 2356
Q ss_pred hHHHHHHHHHHhc
Q 044791 464 DLEDHAEELMVDL 476 (623)
Q Consensus 464 ~~A~~~~~~~~~m 476 (623)
++|...+++..+.
T Consensus 375 ~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 375 LNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHC
Confidence 6666666666553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.2e-07 Score=84.62 Aligned_cols=157 Identities=10% Similarity=0.091 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCC--C-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKGVK--A-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEM-YG 323 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~~~--p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~-y~ 323 (623)
....+...+.+.|++++|+..|++.+. | +...+..+..++...|++++|+..++++++.. |+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344667788999999999999998664 3 45778999999999999999999999987753 355444333222 22
Q ss_pred HcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 044791 324 KCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~ 399 (623)
+.+...+|+..|++..+ .+...+..+...+...|++++|+..|+++++....+ +...+..+..++...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 22233346777776654 245577778888888888888888888887654332 24567777778888888888888
Q ss_pred HHHHHHh
Q 044791 400 HFESMKS 406 (623)
Q Consensus 400 l~~~m~~ 406 (623)
.|++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.2e-06 Score=86.72 Aligned_cols=218 Identities=11% Similarity=0.102 Sum_probs=170.3
Q ss_pred HHHcCCH-HHHHHHHHc--CCCCCH-HHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHc
Q 044791 256 LCQEGKV-KEAIELMDK--GVKADA-SCFYTLFELCGNPK--WYENAKKVHDYFLQSTIRGDLVLNNKVIEMY----GKC 325 (623)
Q Consensus 256 ~~~~g~~-~~A~~l~~~--~~~pd~-~ty~~Ll~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y----~k~ 325 (623)
..+.|.. ++|++++++ .+.|+. .+|+.-..++...| ++++++++++.++....+ +..+|+.-..++ .+.
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 3344444 689998876 445654 45888888888888 999999999999987533 567777665555 555
Q ss_pred ---CCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----
Q 044791 326 ---GSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGD--EGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA---- 393 (623)
Q Consensus 326 ---g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~e--eA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~---- 393 (623)
+++++++++++++.+ ++..+|+.-.-.+.+.|+++ ++++++++|.+.... |...|+.-...+.+.|+
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 789999999999986 45568888888899999998 999999999987654 77788877777777776
Q ss_pred --HHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHH-HHHHHHhhCCC----CCCHHHHHHHHHHHHHcCChhH
Q 044791 394 --IEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFE-AQQFIEQKLPF----EPTAEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 394 --~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~-A~~lf~~~m~~----~Pd~~ty~~Li~a~~~~g~~~~ 465 (623)
++++++.++.++.. .| |...|+-+...+.+.|+..+ +.+++++.... ..+...+..|..+|.+.|+.++
T Consensus 200 ~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 89999999998853 44 67788888888888888444 55677763332 2367889999999999999999
Q ss_pred HHHHHHHHHh-cCC
Q 044791 466 EDHAEELMVD-LDP 478 (623)
Q Consensus 466 A~~~~~~~~~-m~~ 478 (623)
|.++++.+.+ .+|
T Consensus 277 A~~~~~~l~~~~Dp 290 (306)
T 3dra_A 277 SRTVYDLLKSKYNP 290 (306)
T ss_dssp HHHHHHHHHHTTCG
T ss_pred HHHHHHHHHhccCh
Confidence 9999999886 554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.4e-07 Score=93.91 Aligned_cols=161 Identities=11% Similarity=0.007 Sum_probs=131.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH-H
Q 044791 309 RGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLA-V 384 (623)
Q Consensus 309 ~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~-l 384 (623)
..+...+..+...+.+.|++++|+.+|++..+ .+...+..|...+.+.|++++|+.+|++..+. .|+...... +
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 44567788889999999999999999998865 35568999999999999999999999998765 455543333 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHc
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT---AEFWEALRNYARIH 460 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd---~~ty~~Li~a~~~~ 460 (623)
...+...++.++|+..|++.... .| +...+..|..+|...|++++|++.|++++...|+ ...+..|+..|...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 33466778888899999888853 45 5678889999999999999999999997766665 57899999999999
Q ss_pred CChhHHHHHHHHHH
Q 044791 461 GDIDLEDHAEELMV 474 (623)
Q Consensus 461 g~~~~A~~~~~~~~ 474 (623)
|+.++|...++...
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 99998887777654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.8e-06 Score=87.33 Aligned_cols=202 Identities=7% Similarity=-0.050 Sum_probs=134.1
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 044791 266 IELMDKG-VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVL---NNKVIEMYGKCGSMTDARRVFDHMADR 341 (623)
Q Consensus 266 ~~l~~~~-~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~---y~~Li~~y~k~g~~~~A~~lf~~m~~~ 341 (623)
+.-++.| ..|+..+...|...+.-.- + .+ .......+... +...+..+.+.|++++|.+++++..+.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~--~---~~----~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPI--I---HF----YEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCT--H---HH----HHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCH--H---HH----hCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 3444554 3577777777766665321 1 11 11112222333 333467788889999999999887653
Q ss_pred C---------hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 342 S---------MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ-PN----EQTFLAVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 342 ~---------~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~-Pd----~~ty~~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
. ...|..+...+...|++++|+..|++..+.... .+ ..+|+.+..+|...|++++|+..|+++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 113445666677778899999999998874322 22 336888888999999999999999888742
Q ss_pred cC----CCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCC------CCCC-HHHHHHHHHHHHHcCC-hhHHHHHHHHHH
Q 044791 408 FG----ISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP------FEPT-AEFWEALRNYARIHGD-IDLEDHAEELMV 474 (623)
Q Consensus 408 ~g----~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~------~~Pd-~~ty~~Li~a~~~~g~-~~~A~~~~~~~~ 474 (623)
.. ..+ ...+|..+...|.+.|++++|++++++++. .... ..+|..+..+|...|+ .++|.+.++...
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 11 111 234778888889999999999999888443 1122 4688888888999994 588888777765
Q ss_pred hc
Q 044791 475 DL 476 (623)
Q Consensus 475 ~m 476 (623)
++
T Consensus 265 ~i 266 (293)
T 3u3w_A 265 FF 266 (293)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.59 E-value=9.9e-07 Score=85.65 Aligned_cols=95 Identities=12% Similarity=-0.046 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcCC--CCC----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-CCH-HHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKGV--KAD----ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIR-GDL-VLNNKV 318 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~~--~pd----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~-pd~-~~y~~L 318 (623)
..+..+...+.+.|++++|+..|++-+ .|+ ...+..+..++.+.|++++|++.|+++++.... +.. ..+-.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 455667788999999999999997632 233 357888999999999999999999999986322 111 245555
Q ss_pred HHHHHH------------------cCCHHHHHHHHHHhhcC
Q 044791 319 IEMYGK------------------CGSMTDARRVFDHMADR 341 (623)
Q Consensus 319 i~~y~k------------------~g~~~~A~~lf~~m~~~ 341 (623)
..+|.+ .|+.++|+..|+++.+.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 555554 46778888888877653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.2e-06 Score=86.74 Aligned_cols=154 Identities=12% Similarity=0.112 Sum_probs=92.7
Q ss_pred HHHHHHHcCCHHHHHHHHHcC-----CCCCH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 044791 252 DLARLCQEGKVKEAIELMDKG-----VKADA----SCFYTLFELCGNPKWYENAKKVHDYFLQSTIR-GD----LVLNNK 317 (623)
Q Consensus 252 li~~~~~~g~~~~A~~l~~~~-----~~pd~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~y~~ 317 (623)
.+..+...|++++|++++++. ..++. ..+..+...+...|++++|++.|+++++.... .+ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356667777777777777541 11221 12334566666667777777777777763221 12 335777
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhc------CC----hHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-HHHHH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMAD------RS----MDSWHLMINGYADNGLGDEGLQLFEQMRKL----GLQPN-EQTFL 382 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~------~~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~----g~~Pd-~~ty~ 382 (623)
|..+|...|++++|+..|+++.+ .+ ..+|..+...|.+.|++++|+..+++.++. +.... ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777777777777777776652 11 125666777777777777777777766532 22222 45666
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHH
Q 044791 383 AVFSACGSAD-AIEEAFIHFESMK 405 (623)
Q Consensus 383 ~li~a~~~~g-~~e~A~~l~~~m~ 405 (623)
.+..++.+.| ..++|.+.|++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 6666677777 3567776666555
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.8e-07 Score=90.06 Aligned_cols=161 Identities=7% Similarity=-0.079 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCC---h------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HH
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMADRS---M------DSWHLMINGYADNGLGDEGLQLFEQMRKLGL---QPN--EQ 379 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~~~---~------~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~---~Pd--~~ 379 (623)
.+...+..+...|++++|++.+++..+.. . ..+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 33445555666666666666665443211 0 1233344445556666666666666654211 111 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-----ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-------H
Q 044791 380 TFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-----TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-------A 447 (623)
Q Consensus 380 ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-----~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-------~ 447 (623)
+|+.+...|...|++++|+..|++........++ ..+|..+..+|.+.|++++|+++|++++.+.++ .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5666666666666666666666665521111111 135566666666666666666666663321111 3
Q ss_pred HHHHHHHHHHHHcCChhHH-HHHHHHHH
Q 044791 448 EFWEALRNYARIHGDIDLE-DHAEELMV 474 (623)
Q Consensus 448 ~ty~~Li~a~~~~g~~~~A-~~~~~~~~ 474 (623)
.+|..+..+|...|+.++| ...++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5566666666666666666 44444433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=5.2e-07 Score=100.43 Aligned_cols=145 Identities=8% Similarity=-0.018 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHcCCC--C-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 260 GKVKEAIELMDKGVK--A-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFD 336 (623)
Q Consensus 260 g~~~~A~~l~~~~~~--p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~ 336 (623)
|++++|++.|++.+. | +...|..+..++...|++++|++.|++.++.. .-+..++..+..+|.+.|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555666666654332 2 24455666666666666666666666665542 2245566666666666666666666666
Q ss_pred Hhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 044791 337 HMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA---DAIEEAFIHFESMKS 406 (623)
Q Consensus 337 ~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~---g~~e~A~~l~~~m~~ 406 (623)
+..+ .+...|..+..+|.+.|++++|++.|++..+... -+..++..+..++... |+.++|.+.+++..+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 5543 2334566666666666666666666666655421 1345555555566666 666666666666553
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.9e-06 Score=85.78 Aligned_cols=161 Identities=15% Similarity=0.017 Sum_probs=122.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----C----hH
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD-----LVLNNKVIEMYGKCGSMTDARRVFDHMADR-----S----MD 344 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-----~----~~ 344 (623)
.+...+..+...|++++|++.+.+.++...... ...+..+...|...|++++|+..|++..+. + ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 455667788899999999999998887532211 133445667778889999999999987531 1 33
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---CCCC-Cc
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKL-GLQPN-----EQTFLAVFSACGSADAIEEAFIHFESMKSEF---GISP-GT 414 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~-g~~Pd-----~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~---g~~p-~~ 414 (623)
+|+.+...|...|++++|+..|++..+. ...++ ..+|..+..+|...|++++|+..+++...-. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8999999999999999999999998732 01122 2588899999999999999999999877431 1111 14
Q ss_pred cchhhHHHHHHhcCCHHHH-HHHHHh
Q 044791 415 EHYLGLVGVLGKCGHLFEA-QQFIEQ 439 (623)
Q Consensus 415 ~ty~~Li~~~~k~g~~e~A-~~lf~~ 439 (623)
.+|..+..+|.+.|+.++| ...|++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5678888999999999999 777887
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=4.3e-07 Score=82.62 Aligned_cols=136 Identities=13% Similarity=0.072 Sum_probs=86.6
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 044791 254 ARLCQEGKVKEAIELMDKGVKADA---SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTD 330 (623)
Q Consensus 254 ~~~~~~g~~~~A~~l~~~~~~pd~---~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~ 330 (623)
..+...|++++|++.+++.+..+. ..+-.|..+|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 334556777777777766444332 235566777777777777777777777753 2256777777777777777777
Q ss_pred HHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHH-HHHHHHcCCCC-CHHHHHHHHHHHHhcC
Q 044791 331 ARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQL-FEQMRKLGLQP-NEQTFLAVFSACGSAD 392 (623)
Q Consensus 331 A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l-~~eM~~~g~~P-d~~ty~~li~a~~~~g 392 (623)
|+..|++..+ .+..+|..+...|.+.|++++|.+. +++..+. .| +..+|......+...|
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 7777777654 2345777777777777777665554 4666654 34 3455555555554444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=7.6e-07 Score=99.08 Aligned_cols=159 Identities=11% Similarity=-0.079 Sum_probs=117.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHH
Q 044791 290 PKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLF 366 (623)
Q Consensus 290 ~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~ 366 (623)
.|++++|++.|+++++.. .-+...|..+...|.+.|++++|++.|++..+. +...|..+..+|...|++++|+..|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478999999999998753 336889999999999999999999999998764 4568999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhc---CCHHHHHHHHHhhCC
Q 044791 367 EQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKC---GHLFEAQQFIEQKLP 442 (623)
Q Consensus 367 ~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~---g~~e~A~~lf~~~m~ 442 (623)
++..+... -+...+..+..+|.+.|++++|.+.|++..+. .| +...+..+..+|... |+.++|.+.|++++.
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99998632 25788999999999999999999999998854 34 466788899999999 999999999999666
Q ss_pred CCCCH-HHHHHH
Q 044791 443 FEPTA-EFWEAL 453 (623)
Q Consensus 443 ~~Pd~-~ty~~L 453 (623)
..|+. ..|..|
T Consensus 157 ~~p~~~~~~~~l 168 (568)
T 2vsy_A 157 QGVGAVEPFAFL 168 (568)
T ss_dssp HTCCCSCHHHHT
T ss_pred cCCcccChHHHh
Confidence 55543 344333
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.8e-07 Score=83.26 Aligned_cols=151 Identities=11% Similarity=-0.017 Sum_probs=115.5
Q ss_pred HHHcCCHHHHHH---HHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCC
Q 044791 256 LCQEGKVKEAIE---LMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQS----TIR-GDLVLNNKVIEMYGKCGS 327 (623)
Q Consensus 256 ~~~~g~~~~A~~---l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~-pd~~~y~~Li~~y~k~g~ 327 (623)
+...|++++|.+ ++.........++..+..++...|++++|++.+++.++. |.. ....++..+...|...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 346799999999 665533345678999999999999999999999998763 221 135778889999999999
Q ss_pred HHHHHHHHHHhhcC------Ch----HHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHhcC
Q 044791 328 MTDARRVFDHMADR------SM----DSWHLMINGYADNGLGDEGLQLFEQMRKLG---LQPN--EQTFLAVFSACGSAD 392 (623)
Q Consensus 328 ~~~A~~lf~~m~~~------~~----~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g---~~Pd--~~ty~~li~a~~~~g 392 (623)
+++|++.|++..+. +. ..+..+...+...|++++|+..|++..+.. -.+. ..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999987542 32 268889999999999999999999987431 1111 235678888899999
Q ss_pred CHHHHHHHHHHHHh
Q 044791 393 AIEEAFIHFESMKS 406 (623)
Q Consensus 393 ~~e~A~~l~~~m~~ 406 (623)
++++|.+.+++...
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.47 E-value=5.2e-06 Score=94.27 Aligned_cols=212 Identities=12% Similarity=0.064 Sum_probs=162.2
Q ss_pred HHHHHHcC---CCCCHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 044791 265 AIELMDKG---VKADASCFYTLFELCGNPKWYENAK-KVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD 340 (623)
Q Consensus 265 A~~l~~~~---~~pd~~ty~~Ll~~~~~~g~~~~A~-~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~ 340 (623)
+..+|++. +.-+...|-..+.-+...|+.++|. ++|++.+.. ++.+...|-.++...-+.|++++|.++|+.+.+
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455542 2335667777777777788888997 999999875 455777788889999999999999999998864
Q ss_pred C-------------C------------hHHHHHHHHHHHHcCChHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhcCC
Q 044791 341 R-------------S------------MDSWHLMINGYADNGLGDEGLQLFEQMRKL-G-LQPNEQTFLAVFSACGSADA 393 (623)
Q Consensus 341 ~-------------~------------~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~-g-~~Pd~~ty~~li~a~~~~g~ 393 (623)
. + ...|-..+....+.|..+.|..+|.+..+. + ..+......+.|... ..++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCC
Confidence 2 1 126888888888999999999999999876 2 233334333333322 2356
Q ss_pred HHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC----CHHHHHHHHHHHHHcCChhHHHHH
Q 044791 394 IEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP----TAEFWEALRNYARIHGDIDLEDHA 469 (623)
Q Consensus 394 ~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P----d~~ty~~Li~a~~~~g~~~~A~~~ 469 (623)
.+.|..+|+...+.+.- +...+...++.....|+.+.|..+|++++...| ....|...+..-...|+.+.+..+
T Consensus 486 ~e~Ar~ife~~Lk~~p~--~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 486 TKTACKVLELGLKYFAT--DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999976432 445567788888889999999999999777555 346899999988999999999999
Q ss_pred HHHHHhcCCCC
Q 044791 470 EELMVDLDPSK 480 (623)
Q Consensus 470 ~~~~~~m~~~~ 480 (623)
.+++.+..|+.
T Consensus 564 ~~R~~~~~P~~ 574 (679)
T 4e6h_A 564 EKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHSTTC
T ss_pred HHHHHHhCCCC
Confidence 99999987664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-05 Score=81.89 Aligned_cols=223 Identities=10% Similarity=0.074 Sum_probs=166.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcCC---hHHHHHHHHHH----HHc
Q 044791 286 LCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG--SMTDARRVFDHMADRS---MDSWHLMINGY----ADN 356 (623)
Q Consensus 286 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g--~~~~A~~lf~~m~~~~---~~tyn~Li~~~----~~~ 356 (623)
...+....++|+++++.++.... -+..+|+.--.++...| ++++++++++.+...+ ..+|+.-...+ ...
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc
Confidence 33444555799999999999642 25788899888898888 9999999999988643 44777766666 556
Q ss_pred ---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCC--
Q 044791 357 ---GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIE--EAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGH-- 429 (623)
Q Consensus 357 ---g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e--~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~-- 429 (623)
+++++++.+++++.+...+ +..+|+.-.-++.+.|+++ +++++++.+.+. .. -|...|+.-..++.+.|+
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d~-~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-DL-KNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-CT-TCHHHHHHHHHHHHSSGGGC
T ss_pred cccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-CC-CCHHHHHHHHHHHHhccccc
Confidence 7899999999999987433 7778888777888888888 999999999964 22 266677766666777776
Q ss_pred ----HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhH-HHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhc
Q 044791 430 ----LFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDL-EDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGK 503 (623)
Q Consensus 430 ----~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~-A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~ 503 (623)
++++++++++++...| |...|+.+-..+.+.|+... +.+..+.+.+++...+ ........+.+.+
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~---------~s~~al~~la~~~ 268 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQV---------TSSFALETLAKIY 268 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEE---------SCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCC---------CCHHHHHHHHHHH
Confidence 8999999998676566 77899999888888888443 4456665555431111 3355666777777
Q ss_pred CccccccCCcccchHHHHHHHHHHHH
Q 044791 504 SRLVEFRNPTLYRDDEKLKALNQMKE 529 (623)
Q Consensus 504 ~~~~~~~~~~~~~~~eal~~~~~M~~ 529 (623)
.+.|+. ++|+++++.+.+
T Consensus 269 ~~~~~~--------~~A~~~~~~l~~ 286 (306)
T 3dra_A 269 TQQKKY--------NESRTVYDLLKS 286 (306)
T ss_dssp HHTTCH--------HHHHHHHHHHHH
T ss_pred HccCCH--------HHHHHHHHHHHh
Confidence 777766 699999988764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-05 Score=77.66 Aligned_cols=149 Identities=12% Similarity=0.023 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCC-CHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKA-DASCFYTLFELCGNPK----WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK- 324 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~p-d~~ty~~Ll~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k- 324 (623)
.|...|...+++++|++.|++.... +...+..|...|.. + ++++|+++|++..+.| +...+..|..+|..
T Consensus 23 ~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g 98 (212)
T 3rjv_A 23 YLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNR 98 (212)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 4444455555555555555432221 33444445555544 3 5555555555555443 34455555555544
Q ss_pred ---cCCHHHHHHHHHHhhcCCh-----HHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-
Q 044791 325 ---CGSMTDARRVFDHMADRSM-----DSWHLMINGYAD----NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA- 391 (623)
Q Consensus 325 ---~g~~~~A~~lf~~m~~~~~-----~tyn~Li~~~~~----~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~- 391 (623)
.+++++|++.|++..+.+. .++..|...|.. .+++++|+..|++..+.+ .+...+..|...|...
T Consensus 99 ~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~ 176 (212)
T 3rjv_A 99 QAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGE 176 (212)
T ss_dssp GGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCB
T ss_pred CCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCC
Confidence 4555555555555544332 355555555555 445555555555555431 1222333444444321
Q ss_pred C-----CHHHHHHHHHHHH
Q 044791 392 D-----AIEEAFIHFESMK 405 (623)
Q Consensus 392 g-----~~e~A~~l~~~m~ 405 (623)
| +.++|+..|+...
T Consensus 177 gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 177 KGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp TTTBCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 1 4555555555444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=4e-05 Score=79.65 Aligned_cols=212 Identities=12% Similarity=0.078 Sum_probs=156.9
Q ss_pred cCCHHHHHHHHHc--CCCCCH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-CHHHHH
Q 044791 259 EGKVKEAIELMDK--GVKADA-SCFYTLFELCGNPK-WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC-G-SMTDAR 332 (623)
Q Consensus 259 ~g~~~~A~~l~~~--~~~pd~-~ty~~Ll~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~-g-~~~~A~ 332 (623)
.+..++|++++++ .+.|+. .+|+.--.++...| .+++++++++.++.... -+..+|+.-..++.+. + +.++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3445678888876 344543 45777777777777 59999999999998753 3788898888888877 7 899999
Q ss_pred HHHHHhhcCC---hHHHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-------H
Q 044791 333 RVFDHMADRS---MDSWHLMINGYADNGLGD--------EGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA-------I 394 (623)
Q Consensus 333 ~lf~~m~~~~---~~tyn~Li~~~~~~g~~e--------eA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~-------~ 394 (623)
++++.+.+.+ ..+|+.-...+.+.|.++ ++++.+++|.+..+. |..+|+.....+.+.++ +
T Consensus 146 ~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 146 EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHH
Confidence 9999998754 457877777777777777 999999999987544 77888888888888776 7
Q ss_pred HHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCH--------------------HHHHHHHHhhCCC-------CCC
Q 044791 395 EEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHL--------------------FEAQQFIEQKLPF-------EPT 446 (623)
Q Consensus 395 e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~--------------------e~A~~lf~~~m~~-------~Pd 446 (623)
+++++.+++++. +.| |...|+-+-..+.+.|+. .+..++..+.... .+.
T Consensus 225 ~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 225 QDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 899999988884 345 566777777777766653 3444444442221 256
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 447 AEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 447 ~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
...+..|++.|...|+.++|.++++.+.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 78889999999999999999999998863
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.41 E-value=9.5e-06 Score=73.24 Aligned_cols=126 Identities=13% Similarity=0.028 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYA 354 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~ 354 (623)
..+..+...+...|++++|...|++.++.. ..+..++..+..+|...|++++|+..|++..+ .+...|..+..++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 346667777777788888888887777753 23567777777777778888888887776654 24456777777777
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPNEQTFL--AVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd~~ty~--~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
..|++++|+..|+++.+.... +...+. .++..+...|++++|++.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 788888888888777765321 333332 33333566677777777776554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.40 E-value=4.7e-06 Score=75.31 Aligned_cols=91 Identities=9% Similarity=0.016 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS 390 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~ 390 (623)
.+..+...+...|++++|+..|++..+ .+..+|..+...+...|++++|+..|++..+.. ..+..+|..+..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 344444455555555555555554432 123344445555555555555555555544432 1133444444444444
Q ss_pred cCCHHHHHHHHHHHH
Q 044791 391 ADAIEEAFIHFESMK 405 (623)
Q Consensus 391 ~g~~e~A~~l~~~m~ 405 (623)
.|++++|...|+++.
T Consensus 94 ~~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 94 LGKFRAALRDYETVV 108 (166)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH
Confidence 555555555554444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-05 Score=67.70 Aligned_cols=94 Identities=17% Similarity=0.241 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYA 354 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~ 354 (623)
.+|..+...+...|++++|+++++++++.. ..+..++..+..+|.+.|++++|+.+|+++.+ .+..+|..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 345555555566666666666666655542 22455555555556666666666666555543 23345555555555
Q ss_pred HcCChHHHHHHHHHHHHc
Q 044791 355 DNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~ 372 (623)
..|++++|..+|+++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 555555555555555543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.1e-06 Score=77.43 Aligned_cols=115 Identities=6% Similarity=0.009 Sum_probs=61.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHH-HHHcCCh--HHH
Q 044791 289 NPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMING-YADNGLG--DEG 362 (623)
Q Consensus 289 ~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~-~~~~g~~--eeA 362 (623)
..|++++|++.+++.++.. +.+..+|..+..+|...|++++|+..|++..+ .+...|..+..+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3455555666665555542 22455556666666666666666666665543 234455555555 5556665 666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 363 LQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 363 ~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
+.+|+++.+... -+...+..+..++...|++++|...|+.+.
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 666666665421 134555555566666666666666666655
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.7e-06 Score=74.89 Aligned_cols=92 Identities=10% Similarity=-0.026 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG 389 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~ 389 (623)
..+..+...|.+.|++++|++.|++..+ .+...|..+..+|.+.|++++|+..|++.++... -+...|..+..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHH
Confidence 3444455555555555555555554432 2333455555555555555555555555544321 13344444555555
Q ss_pred hcCCHHHHHHHHHHHH
Q 044791 390 SADAIEEAFIHFESMK 405 (623)
Q Consensus 390 ~~g~~e~A~~l~~~m~ 405 (623)
..|++++|++.|+...
T Consensus 93 ~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 93 AMREWSKAQRAYEDAL 108 (126)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555555444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.33 E-value=3e-06 Score=85.59 Aligned_cols=193 Identities=10% Similarity=-0.062 Sum_probs=129.4
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMING 352 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~ 352 (623)
+...+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+..|++..+. +...|..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678888899999999999999999998863 237889999999999999999999999998763 45689999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e 431 (623)
|...|++++|+..|++..+.. |+. ..+..++....+ ..++.. +...... ....+......+ ..+ ..|+.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~-~~~~~~~i~~~l-~~l-~~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEER-RIHQESELHSYL-TRL-IAAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHT-CCCCCCHHHHHH-HHH-HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHH-HHhhhHHHHHHH-HHH-HHHHHH
Confidence 999999999999999988642 110 011111111111 111111 1222222 333344433333 333 369999
Q ss_pred HHHHHHHhhCCCCCCHHHH-HHHHHHHHHc-CChhHHHHHHHHHHhcCC
Q 044791 432 EAQQFIEQKLPFEPTAEFW-EALRNYARIH-GDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 432 ~A~~lf~~~m~~~Pd~~ty-~~Li~a~~~~-g~~~~A~~~~~~~~~m~~ 478 (623)
+|++.++++++..|+.... ..+...+... +.+++|.++++...+...
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 9999999977778876433 3333334444 557767777776655433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.30 E-value=8.5e-06 Score=69.24 Aligned_cols=93 Identities=16% Similarity=0.241 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSAC 388 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~ 388 (623)
..++..+...|.+.|++++|+++|+++.+ .+..+|..+...+.+.|++++|+.+|+++.+.. ..+..++..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 34555666666666666666666665543 234455666666666666666666666665542 12445555555566
Q ss_pred HhcCCHHHHHHHHHHHH
Q 044791 389 GSADAIEEAFIHFESMK 405 (623)
Q Consensus 389 ~~~g~~e~A~~l~~~m~ 405 (623)
...|++++|...|+++.
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHH
Confidence 66666666666666555
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=3e-05 Score=80.13 Aligned_cols=222 Identities=10% Similarity=0.053 Sum_probs=159.8
Q ss_pred HHHHHHHcCCHH-HHHHHHHc--CCCCCHH-HHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCCCCHHHHHH
Q 044791 252 DLARLCQEGKVK-EAIELMDK--GVKADAS-CFYTLFELCGNPKW----------YENAKKVHDYFLQSTIRGDLVLNNK 317 (623)
Q Consensus 252 li~~~~~~g~~~-~A~~l~~~--~~~pd~~-ty~~Ll~~~~~~g~----------~~~A~~l~~~m~~~g~~pd~~~y~~ 317 (623)
.+....+.|.++ +|++++++ .+.|+.. +|+.--.++...+. +++++.+++.++... +-+..+|+.
T Consensus 35 ~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~h 113 (331)
T 3dss_A 35 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 113 (331)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 344555677776 78999986 4556543 45544333333332 688999999998864 348899998
Q ss_pred HHHHHHHcC--CHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044791 318 VIEMYGKCG--SMTDARRVFDHMADR---SMDSWHLMINGYADNGL-GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA 391 (623)
Q Consensus 318 Li~~y~k~g--~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~-~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~ 391 (623)
-.-++.+.| .+++++.+++.+.+. |..+|+.-...+...|. ++++++.++++.+..+. |..+|+.....+.+.
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 888888888 499999999999864 55688888888889998 59999999999987644 677777766665554
Q ss_pred --------------CCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhc-----------CCHHHHHHHHHhhCCCCC
Q 044791 392 --------------DAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKC-----------GHLFEAQQFIEQKLPFEP 445 (623)
Q Consensus 392 --------------g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~-----------g~~e~A~~lf~~~m~~~P 445 (623)
+.++++++.+...+. +.| |...|+-+-..+.+. +.++++++.++++++..|
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 458899999988884 345 566676665556555 468899999999677788
Q ss_pred CHHHHHHHHHH-----HHHcCChhHHHHHHHHHHhcCCC
Q 044791 446 TAEFWEALRNY-----ARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 446 d~~ty~~Li~a-----~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
|. .|..+-.+ ....|..+++...+..+.+++|.
T Consensus 270 d~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 270 EN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp TC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred cc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 75 34332222 22356677778888888888765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.6e-06 Score=79.40 Aligned_cols=99 Identities=7% Similarity=0.016 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGV 423 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~ 423 (623)
.|..+...+.+.|++++|+..|++.++... -+...|..+..+|...|++++|+..|++..+ +.| +...|..+..+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~---l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFA---LGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHh---hCCCCcHHHHHHHHH
Confidence 566666666667777777777776666421 1455666666666667777777777766663 233 35556666666
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 424 LGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 424 ~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
|.+.|++++|++.|++++...|+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCH
Confidence 777777777777776655444544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.6e-05 Score=80.65 Aligned_cols=265 Identities=9% Similarity=-0.039 Sum_probs=164.1
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC-----CCCCH--
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG-----VKADA-- 277 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~-----~~pd~-- 277 (623)
.+|+|++|++.|..+.+.. +......................+..|...|...|++++|++++... ...+.
T Consensus 16 ~~~~y~eA~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 16 NEKQYNEAEQVYLSLLDKD--SSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHTCHHHHHHHHHHHHHSC--CCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HCCCHHHHHHHHHHHHhhC--cccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 6899999999999884411 11111110000000000001123567889999999999999998642 11222
Q ss_pred --HHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhc--------C-
Q 044791 278 --SCFYTLFELCGNPKWYENAKKVHDYFLQS----TIRGD-LVLNNKVIEMYGKCGSMTDARRVFDHMAD--------R- 341 (623)
Q Consensus 278 --~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--------~- 341 (623)
.+.+.+...+...|+.++|.+++.+.... +..+. ..++..|...|...|++++|..+++++.. +
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 23444445556678999999999887642 33333 57888999999999999999999997753 1
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCcc
Q 044791 342 SMDSWHLMINGYADNGLGDEGLQLFEQMRKL--GLQ-P-N--EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTE 415 (623)
Q Consensus 342 ~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~--g~~-P-d--~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ 415 (623)
.+..|..++..|...|++++|..++++.+.. .+. | . ...+..+...+...|++++|...|.+..+.+....+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~ 253 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHN 253 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh
Confidence 1338999999999999999999999988742 121 2 1 35667777788899999999998887765322111111
Q ss_pred ----chh---hHHHHHHhcCCHHHHHHHHHh--hCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 044791 416 ----HYL---GLVGVLGKCGHLFEAQQFIEQ--KLP--FEPTAEFWEALRNYARIHGDIDLEDHAEEL 472 (623)
Q Consensus 416 ----ty~---~Li~~~~k~g~~e~A~~lf~~--~m~--~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~ 472 (623)
... .++-+....+..+.....+.. ... ..++...+..++.++. .+++.....+.+.
T Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~ 320 (434)
T 4b4t_Q 254 SYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYN-NRSLLDFNTALKQ 320 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHH-hhhHHHHHHHHHH
Confidence 011 111122223444555555554 111 2234567777777775 4555544444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.6e-05 Score=68.07 Aligned_cols=113 Identities=12% Similarity=-0.028 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYA 354 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~ 354 (623)
..+..+...+...|++++|+++++++++.. ..+..++..+..+|...|++++|+..|++..+ .+...|..+...|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 345555555555666666666666655542 22455555555556666666666666555443 22335555555555
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD 392 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g 392 (623)
..|++++|+..|++..+... -+...+..+..++...|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHh
Confidence 55666666665555554421 13344444444444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-06 Score=88.72 Aligned_cols=126 Identities=10% Similarity=-0.047 Sum_probs=92.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-----hHHHHHHHHHHH
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRS-----MDSWHLMINGYA 354 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~-----~~tyn~Li~~~~ 354 (623)
+-.+..++...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+...... ...+..|..++.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence 3345667778888999999988876643 444366667778888899999999888665532 236777888888
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPN--EQTFLAVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd--~~ty~~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
..|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88888888888888875433354 235566677788888888888888888754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.25 E-value=4.6e-06 Score=76.22 Aligned_cols=99 Identities=10% Similarity=-0.008 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHH
Q 044791 378 EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRN 455 (623)
Q Consensus 378 ~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~ 455 (623)
...+..+...+.+.|++++|+..|+.... +.| +...|..|..+|...|++++|++.|++++.+.| +...|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 45777888899999999999999999984 355 577888999999999999999999999777677 4588999999
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCC
Q 044791 456 YARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 456 a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
+|...|++++|...++...++.++
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999998754
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.1e-05 Score=69.12 Aligned_cols=104 Identities=10% Similarity=-0.027 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYA 354 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~ 354 (623)
..+..+...+.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|+..|++..+ .+...|..+..+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 467788999999999999999999998864 34789999999999999999999999998765 34568999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPN-EQTFLAV 384 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd-~~ty~~l 384 (623)
..|++++|+..|++.++. .|+ ...+..|
T Consensus 93 ~~~~~~~A~~~~~~al~l--~P~~~~a~~~l 121 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV--DPSNEEAREGV 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH--CcCCHHHHHHH
Confidence 999999999999999885 454 3344333
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-05 Score=69.19 Aligned_cols=114 Identities=13% Similarity=0.091 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGV 423 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~ 423 (623)
.|..+...+...|++++|+..|++..+.. ..+...+..+..++...|++++|++.++..... .| +...+..+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHHHHH
Confidence 44445555555555555555555555432 113444555555555555555555555555532 12 23444555555
Q ss_pred HHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCC
Q 044791 424 LGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGD 462 (623)
Q Consensus 424 ~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~ 462 (623)
|.+.|++++|..+|++++...| +...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 5555555555555555433333 33444444445544444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-05 Score=82.42 Aligned_cols=147 Identities=8% Similarity=-0.109 Sum_probs=104.7
Q ss_pred cCCHHHHHHHHHcCC--CC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHH
Q 044791 259 EGKVKEAIELMDKGV--KA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD--------------LVLNNKVIEM 321 (623)
Q Consensus 259 ~g~~~~A~~l~~~~~--~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd--------------~~~y~~Li~~ 321 (623)
.+++++|++.|+..+ .| +...|..+...+.+.|++++|+..|++.++...... ..+|..+..+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 345566666665433 23 345788888999999999999999999988642211 4777888888
Q ss_pred HHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-
Q 044791 322 YGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEA- 397 (623)
Q Consensus 322 y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A- 397 (623)
|.+.|++++|+..|++..+ .+...|..+..+|...|++++|+..|++.++... -+..++..+..++...|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887764 3455777888888888888888888888777532 2456677777777777777777
Q ss_pred HHHHHHHHh
Q 044791 398 FIHFESMKS 406 (623)
Q Consensus 398 ~~l~~~m~~ 406 (623)
..+|..|..
T Consensus 285 ~~~~~~~~~ 293 (336)
T 1p5q_A 285 KKLYANMFE 293 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555553
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.6e-05 Score=80.17 Aligned_cols=186 Identities=8% Similarity=-0.097 Sum_probs=113.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHhhcC------------C-------
Q 044791 289 NPKWYENAKKVHDYFLQSTIRGDLVLNNKV-------IEMYGKCGSMTDARRVFDHMADR------------S------- 342 (623)
Q Consensus 289 ~~g~~~~A~~l~~~m~~~g~~pd~~~y~~L-------i~~y~k~g~~~~A~~lf~~m~~~------------~------- 342 (623)
..++...|.+.|.++.... +-....|..+ ..++.+.++..+++..+..-.+. +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777777753 2245666666 45555555555555555544331 1
Q ss_pred -----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC--cc
Q 044791 343 -----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG--TE 415 (623)
Q Consensus 343 -----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~--~~ 415 (623)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .+. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 0133445566777778888888777776543 44434445555677778888888877644321 0 111 23
Q ss_pred chhhHHHHHHhcCCHHHHHHHHHhhCC--CCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 416 HYLGLVGVLGKCGHLFEAQQFIEQKLP--FEPT--AEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 416 ty~~Li~~~~k~g~~e~A~~lf~~~m~--~~Pd--~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
.+..|..++...|++++|++.|+++.. ..|. ...+..+..++...|+.++|..+++.+....|.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 556667777778888888888877432 1143 234555666777778888888877777776544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=2e-05 Score=68.10 Aligned_cols=57 Identities=16% Similarity=0.011 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDH 337 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~ 337 (623)
|..+...+...|++++|+++|++.++.. ..+..++..+..+|...|++++|++.|++
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 75 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEE 75 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3333334444444444444444433321 11233333333334344444444444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.19 E-value=7.2e-06 Score=72.14 Aligned_cols=102 Identities=10% Similarity=-0.063 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CCCC----ccchhh
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFG-ISPG----TEHYLG 419 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g-~~p~----~~ty~~ 419 (623)
+|..|...+.+.|++++|+..|++.++... -+..+|..+..+|.+.|++++|++.|+..++-.. ...+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344455555555555555555555554321 1344455555555555555555555554442100 0000 123444
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 420 LVGVLGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 420 Li~~~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
+..+|...|++++|++.|++++...||.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 4555555566666666665544434443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00012 Score=75.99 Aligned_cols=232 Identities=11% Similarity=0.077 Sum_probs=157.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhhcC---ChHHHHHHHHHHHHc-
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG-SMTDARRVFDHMADR---SMDSWHLMINGYADN- 356 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g-~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~- 356 (623)
.+.....+.+..++|++++++++.... -+..+|+.--.++...| .+++++++++.+... +..+|+.-...+.+.
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 333344455566789999999999653 36788898888888888 599999999999864 445888888888877
Q ss_pred C-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhhcCCCCCccchhhHHHHHHhc
Q 044791 357 G-LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIE--------EAFIHFESMKSEFGISPGTEHYLGLVGVLGKC 427 (623)
Q Consensus 357 g-~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e--------~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~ 427 (623)
+ ++++++++++++.+...+ +..+|+.-.-++.+.|.++ ++++.++++++. . .-|...|+.....+.+.
T Consensus 138 ~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-d-p~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-D-GRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHTTS
T ss_pred CCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhc
Confidence 7 899999999999976433 6667766555555555555 899999999864 2 22677788888788887
Q ss_pred CC-------HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhH-----------------HHHHHHHHHhcCCCCCC
Q 044791 428 GH-------LFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDL-----------------EDHAEELMVDLDPSKAD 482 (623)
Q Consensus 428 g~-------~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~-----------------A~~~~~~~~~m~~~~~~ 482 (623)
++ ++++++++++++...| |...|+.+-..+...|+... ...+.+...++......
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 76 7899999988776666 77889888877777776410 12344444444332100
Q ss_pred CCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHH
Q 044791 483 PKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMK 528 (623)
Q Consensus 483 ~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~ 528 (623)
.............+.+.+...++. ++|+++++.+.
T Consensus 295 ---~~~~~~s~~al~~l~d~~~~~~~~--------~~a~~~~~~l~ 329 (349)
T 3q7a_A 295 ---EDTPLPVPLALEYLADSFIEQNRV--------DDAAKVFEKLS 329 (349)
T ss_dssp ---SSCCSCCHHHHHHHHHHHHHTTCH--------HHHHHHHHHHH
T ss_pred ---cccCCCcHHHHHHHHHHHHhcCCH--------HHHHHHHHHHH
Confidence 001123445555666677666654 57888887764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=4.4e-06 Score=75.69 Aligned_cols=92 Identities=10% Similarity=-0.037 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG 389 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~ 389 (623)
..+..+...+.+.|++++|+..|++... .+...|..+..+|...|++++|+..|++.++... -+...+..+..+|.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 3444445555555555555555554432 2333444555555555555555555555544321 12344444444555
Q ss_pred hcCCHHHHHHHHHHHH
Q 044791 390 SADAIEEAFIHFESMK 405 (623)
Q Consensus 390 ~~g~~e~A~~l~~~m~ 405 (623)
..|++++|+..|+...
T Consensus 101 ~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQ 116 (148)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.16 E-value=3.7e-05 Score=67.48 Aligned_cols=94 Identities=11% Similarity=0.043 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC----------hHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRS----------MDSWH 347 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~----------~~tyn 347 (623)
.++..|...+.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|++.|++..+.+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 356677777777888888888887777753 2356777777778888888888887777665421 12566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
.+..++...|++++|++.|++.++.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6677777777777777777776654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-05 Score=83.33 Aligned_cols=119 Identities=12% Similarity=0.023 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--C-C---------------hHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMAD--R-S---------------MDSWHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--~-~---------------~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
+...|..+...|.+.|++++|+..|++..+ + + ..+|..+..+|.+.|++++|+..|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666777777777777777777776543 1 1 245555555666666666666666665554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHH
Q 044791 373 GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEA 433 (623)
Q Consensus 373 g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A 433 (623)
.. -+..+|..+..+|...|++++|+..|++..+. .| +...+..|..++.+.|+.++|
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 21 14455555555555555555555555555522 23 233444455555555555555
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-05 Score=73.06 Aligned_cols=94 Identities=14% Similarity=-0.072 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYA 354 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~ 354 (623)
..+..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|++... .+...|..+..+|.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 345556666667777777777777666643 22566666677777777777777777766653 24446666667777
Q ss_pred HcCChHHHHHHHHHHHHc
Q 044791 355 DNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~ 372 (623)
..|++++|+..|++.++.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777766653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.14 E-value=2e-05 Score=70.01 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~ 370 (623)
++..+...+...|++++|+..|++..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.14 E-value=5.9e-05 Score=65.01 Aligned_cols=113 Identities=11% Similarity=-0.033 Sum_probs=91.3
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044791 244 QVLPPSVADLARLCQEGKVKEAIELMDK--GVKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIE 320 (623)
Q Consensus 244 ~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~ 320 (623)
.....+..+...+.+.|++++|+++|++ ...| +..++..+..++...|++++|+++++++++.. ..+..++..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3455667888899999999999999986 3334 56789999999999999999999999999864 336888999999
Q ss_pred HHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcC
Q 044791 321 MYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNG 357 (623)
Q Consensus 321 ~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g 357 (623)
+|.+.|++++|++.|++..+. +...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999999999987653 3346666666666554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=2.5e-06 Score=80.79 Aligned_cols=145 Identities=9% Similarity=0.012 Sum_probs=82.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---------------H
Q 044791 317 KVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN---------------E 378 (623)
Q Consensus 317 ~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd---------------~ 378 (623)
..+.+....|++++|.++|+...+. ....|..+...+.+.|++++|+.+|++.++....-. .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3444445556666666655432221 223566666667777777777777777765321111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHH
Q 044791 379 QTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNY 456 (623)
Q Consensus 379 ~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a 456 (623)
.+|..+..+|...|++++|+..++..... .| +...|..+..+|...|++++|++.|++++.+.| +...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 56677777777778888888877777743 23 455667777777778888888888877555555 44556666666
Q ss_pred HHHcCChh
Q 044791 457 ARIHGDID 464 (623)
Q Consensus 457 ~~~~g~~~ 464 (623)
+...++.+
T Consensus 166 ~~~~~~~~ 173 (198)
T 2fbn_A 166 VNKLKEAR 173 (198)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.13 E-value=4.9e-06 Score=83.96 Aligned_cols=184 Identities=9% Similarity=-0.056 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcCC--CC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKGV--KA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG 323 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~~--~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~ 323 (623)
..+..+...+.+.|++++|+..|++.+ .| +...|..+..++.+.|++++|++.+++.++.. .-+...+..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 345577788999999999999998633 45 67789999999999999999999999998863 336889999999999
Q ss_pred HcCCHHHHHHHHHHhhcCChH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044791 324 KCGSMTDARRVFDHMADRSMD---SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIH 400 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~~~~~---tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l 400 (623)
+.|++++|+..|++..+.+.. .+..++....+. .++. .+....+.....+......+ ..+ ..|+.++|.+.
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~ 157 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERERELEE 157 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHH
Confidence 999999999999988653221 111222222211 1111 12223333344444443333 333 26889999998
Q ss_pred HHHHHhhcCCCCCc-cchhhHHHHHHhc-CCHHHHHHHHHhh
Q 044791 401 FESMKSEFGISPGT-EHYLGLVGVLGKC-GHLFEAQQFIEQK 440 (623)
Q Consensus 401 ~~~m~~~~g~~p~~-~ty~~Li~~~~k~-g~~e~A~~lf~~~ 440 (623)
++... ...|+. .....+...+.+. +.+++|.++|+++
T Consensus 158 ~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 158 CQRNH---EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp TSGGG---TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhhh---ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88776 445643 3334444445554 7789999999983
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-05 Score=84.33 Aligned_cols=189 Identities=11% Similarity=-0.015 Sum_probs=137.3
Q ss_pred HHHHHHHcCCHHHHHHHHHcCC--C------------CC------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCC
Q 044791 252 DLARLCQEGKVKEAIELMDKGV--K------------AD------ASCFYTLFELCGNPKWYENAKKVHDYFLQS-TIRG 310 (623)
Q Consensus 252 li~~~~~~g~~~~A~~l~~~~~--~------------pd------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-g~~p 310 (623)
-...+.+.|++++|++.|.+.+ . .. ..++..|+..|.+.|++++|.+++.++.+. +-..
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3456788999999999995310 0 01 134788999999999999999999987653 1122
Q ss_pred CH----HHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----C----hHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CC-
Q 044791 311 DL----VLNNKVIEMYGKCGSMTDARRVFDHMADR-----S----MDSWHLMINGYADNGLGDEGLQLFEQMRKL--GL- 374 (623)
Q Consensus 311 d~----~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-----~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~--g~- 374 (623)
+. .+.+.+...+...|+.++|+.++++.... + ..++..|...|...|++++|..++++.... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 22 33444555555679999999999877531 1 237889999999999999999999998743 21
Q ss_pred -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-----ccchhhHHHHHHhcCCHHHHHHHHHhh
Q 044791 375 -QP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-----TEHYLGLVGVLGKCGHLFEAQQFIEQK 440 (623)
Q Consensus 375 -~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-----~~ty~~Li~~~~k~g~~e~A~~lf~~~ 440 (623)
.+ ...+|..++..|...|++++|..+++.......-.++ ...+..+...+...|++++|...|.++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 12 2457888999999999999999999887643211111 245666777778899999999888773
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-05 Score=70.49 Aligned_cols=129 Identities=12% Similarity=0.013 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----C----h
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIR-GD----LVLNNKVIEMYGKCGSMTDARRVFDHMADR-----S----M 343 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-----~----~ 343 (623)
.++..+...+...|++++|++.+++.++.... .+ ..++..+...|...|++++|++.|++..+. + .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35677777777888888888888777653110 11 246777888888888888888888876531 1 2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 344 DSWHLMINGYADNGLGDEGLQLFEQMRKL----GLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 344 ~tyn~Li~~~~~~g~~eeA~~l~~eM~~~----g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
.++..+...+...|++++|+..|++..+. +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 36777778888888888888888877643 1111 134566666777777777777777776653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00027 Score=72.89 Aligned_cols=188 Identities=12% Similarity=0.075 Sum_probs=139.4
Q ss_pred CCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHhhc---CChHHHHHHHHHHH
Q 044791 289 NPKWY-ENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS----------MTDARRVFDHMAD---RSMDSWHLMINGYA 354 (623)
Q Consensus 289 ~~g~~-~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~----------~~~A~~lf~~m~~---~~~~tyn~Li~~~~ 354 (623)
+.|.+ ++|+++++.++.... -+..+|+.--.++...+. +++++.+++.+.. ++..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 44555 489999999998542 245667665444444333 6889999998875 45568888888888
Q ss_pred HcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhc----
Q 044791 355 DNGL--GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA-IEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKC---- 427 (623)
Q Consensus 355 ~~g~--~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~-~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~---- 427 (623)
+.|+ +++++.++++|.+...+ |..+|+.-.-++...|. ++++++.++.+++. .. -|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~p-~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NF-SNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CS-CCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-CC-CCHHHHHHHHHHHHHhhhcc
Confidence 8884 89999999999987543 77788877777788888 69999999999964 22 2566677666655554
Q ss_pred ----------CCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHc-----------CChhHHHHHHHHHHhcCCCC
Q 044791 428 ----------GHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIH-----------GDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 428 ----------g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~-----------g~~~~A~~~~~~~~~m~~~~ 480 (623)
+.++++++++++++...| |...|+.+-..+... +.++++.+.++.+.++.|++
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 568899999999776666 677887665555544 35788888999999998764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.10 E-value=8.5e-06 Score=75.29 Aligned_cols=121 Identities=9% Similarity=0.048 Sum_probs=94.1
Q ss_pred HHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 044791 323 GKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA-CGSADAI--EE 396 (623)
Q Consensus 323 ~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a-~~~~g~~--e~ 396 (623)
...|++++|+..|++..+ .+...|..+...|...|++++|+..|++..+... -+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHH
Confidence 456888899999887654 3566899999999999999999999999987632 256777778777 7788998 99
Q ss_pred HHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 397 AFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 397 A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
|..+|+.+.+. .| +...+..+..+|...|++++|+..|++++...|+.
T Consensus 100 A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 100 TRAMIDKALAL---DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHh---CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 99999998854 34 45677788889999999999999999966666654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=9.3e-06 Score=76.75 Aligned_cols=145 Identities=9% Similarity=-0.122 Sum_probs=74.0
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCC---CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-CC--------------HHH
Q 044791 253 LARLCQEGKVKEAIELMDKGVKA---DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIR-GD--------------LVL 314 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~~~p---d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~-pd--------------~~~ 314 (623)
+.+....|.+++|.+.++....- ....+..+...+.+.|++++|+++|++.++.... ++ ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33445566677766666532211 2345777777888888888888888888774211 10 145
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044791 315 NNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA 391 (623)
Q Consensus 315 y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~ 391 (623)
|..+..+|.+.|++++|+..|++..+ .+...|..+..+|...|++++|+..|++..+... -+...+..+..++...
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHH
Confidence 55556666666666666666655543 2333555555556666666666666665554321 1334444444444444
Q ss_pred CCHHHHH
Q 044791 392 DAIEEAF 398 (623)
Q Consensus 392 g~~e~A~ 398 (623)
++.+++.
T Consensus 170 ~~~~~~~ 176 (198)
T 2fbn_A 170 KEARKKD 176 (198)
T ss_dssp HHHHC--
T ss_pred HHHHHHH
Confidence 4444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=7.3e-05 Score=64.70 Aligned_cols=94 Identities=10% Similarity=-0.075 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYA 354 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~ 354 (623)
..|..+...+.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..|++..+ .+...|..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 456666777777777777777777777753 23567777777777777777777777776654 23446777777777
Q ss_pred HcCChHHHHHHHHHHHHc
Q 044791 355 DNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~ 372 (623)
..|++++|+..|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 777777777777777654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.08 E-value=5e-05 Score=69.25 Aligned_cols=92 Identities=11% Similarity=0.014 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHH
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYAD 355 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~ 355 (623)
.|..+...+.+.|++++|+++|++.++.. .-+...|..+..+|.+.|++++|+..|++..+ .+...|..+..+|..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44445555555555555555555555432 11444555555555555555555555554432 123344445555555
Q ss_pred cCChHHHHHHHHHHHH
Q 044791 356 NGLGDEGLQLFEQMRK 371 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~ 371 (623)
.|++++|+..|++.++
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 5555555555555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.07 E-value=3.9e-05 Score=65.74 Aligned_cols=104 Identities=10% Similarity=0.057 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---C-------hHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---S-------MDSWH 347 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~-------~~tyn 347 (623)
..|..+...+...|++++|+.+|++.++.. ..+..++..+..+|.+.|++++|+..|+++.+. + ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456677777777888888888888777753 335677777777888888888888888776542 2 44677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV 384 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~l 384 (623)
.+...|...|++++|...|+++.+.. |+......+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l 118 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 77777777888888888887777653 454444333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.1e-05 Score=67.11 Aligned_cols=92 Identities=11% Similarity=0.055 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVL 424 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~ 424 (623)
|..+...+.+.|++++|+..|++.++.. .-+...|..+..++.+.|++++|+..|+...+. .| +...|..+..+|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHH
Confidence 3444444445555555555555544432 113344444445555555555555555544421 22 233444444555
Q ss_pred HhcCCHHHHHHHHHhhC
Q 044791 425 GKCGHLFEAQQFIEQKL 441 (623)
Q Consensus 425 ~k~g~~e~A~~lf~~~m 441 (623)
...|++++|++.|++++
T Consensus 83 ~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 83 IAVKEYASALETLDAAR 99 (126)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHH
Confidence 55555555555555433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.8e-05 Score=66.71 Aligned_cols=103 Identities=12% Similarity=-0.008 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-CCC----ccchhhH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGI-SPG----TEHYLGL 420 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~-~p~----~~ty~~L 420 (623)
|..+...+...|++++|+.+|++..+.. ..+...+..+...+...|++++|...++.+.....- ..+ ..+|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444444444444444444444444332 113344444444444445555555444444432100 011 3344444
Q ss_pred HHHHHhcCCHHHHHHHHHhhCCCCCCHHH
Q 044791 421 VGVLGKCGHLFEAQQFIEQKLPFEPTAEF 449 (623)
Q Consensus 421 i~~~~k~g~~e~A~~lf~~~m~~~Pd~~t 449 (623)
..+|.+.|++++|.+.|++++...|+...
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 114 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHRTPDV 114 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCHHH
Confidence 55555555555555555553333344333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.99 E-value=9.7e-05 Score=67.30 Aligned_cols=96 Identities=7% Similarity=-0.096 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a 387 (623)
+...+..+...|.+.|++++|+..|++..+ .+...|..+..+|.+.|++++|+..|++.++... -+...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 356677777778888888888888877654 2455777777888888888888888888777532 246677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhh
Q 044791 388 CGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~ 407 (623)
|...|++++|+..|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 88888888888888777743
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00012 Score=61.35 Aligned_cols=96 Identities=19% Similarity=0.101 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVL 424 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~ 424 (623)
|..+...+...|++++|+.+|++..+.. .-+...+..+..++...|++++|...+++.... .| +...+..+..+|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---CcccHHHHHHHHHHH
Confidence 3344444444444444444444444331 113334444444444444444444444444422 11 233344444445
Q ss_pred HhcCCHHHHHHHHHhhCCCCC
Q 044791 425 GKCGHLFEAQQFIEQKLPFEP 445 (623)
Q Consensus 425 ~k~g~~e~A~~lf~~~m~~~P 445 (623)
...|++++|.++|++++...|
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 555555555555554333333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00026 Score=59.19 Aligned_cols=92 Identities=12% Similarity=-0.056 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHH
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYAD 355 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~ 355 (623)
.+..+...+...|++++|+++|++.++.. +.+...+..+..+|.+.|++++|+..|++..+ .+...|..+..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444555555555555555555554432 12344455555555555555555555554432 123344444455555
Q ss_pred cCChHHHHHHHHHHHH
Q 044791 356 NGLGDEGLQLFEQMRK 371 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~ 371 (623)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00026 Score=62.21 Aligned_cols=95 Identities=11% Similarity=-0.072 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD----LVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHL 348 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~ 348 (623)
+...+..+...+...|++++|+++|++.++. .|+ ..+|..+..+|.+.|++++|+..|++..+ .+...|..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 4455666666666677777777777666653 344 45666666666666777777666665543 23446666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
+..+|...|++++|+..|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666666677777777777666654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00014 Score=63.33 Aligned_cols=93 Identities=11% Similarity=-0.065 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGY 353 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~ 353 (623)
...|..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|++..+ .+...|..+..+|
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3444444445555555555555555544432 12344444444444455555555544444432 1223444444444
Q ss_pred HHcCChHHHHHHHHHHH
Q 044791 354 ADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 354 ~~~g~~eeA~~l~~eM~ 370 (623)
...|++++|+..|++..
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 44444444444444444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00019 Score=81.53 Aligned_cols=216 Identities=9% Similarity=-0.059 Sum_probs=155.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 296 AKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR-RVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 296 A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~-~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
+..+|++++.. +.-+...|-..+..+.+.|+.++|. ++|++... .+...|-..+...-+.|++++|..+|+++++
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667777765 3446778888888888889999997 99998765 3445677888889999999999999999986
Q ss_pred cCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhc-CC
Q 044791 372 LGL---------QPN------------EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKC-GH 429 (623)
Q Consensus 372 ~g~---------~Pd------------~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~-g~ 429 (623)
... .|+ ...|...+....+.|.++.|..+|....+.. .......|...+..-.+. ++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCC
Confidence 410 142 2367777888888899999999999998541 111233343333333344 45
Q ss_pred HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCcccc
Q 044791 430 LFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVE 508 (623)
Q Consensus 430 ~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~ 508 (623)
.+.|..+|++++...| +...|...+......|+.+.|..+++......+... -....|..++.--.+.|.
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~---------~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH---------LLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT---------HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH---------HHHHHHHHHHHHHHHcCC
Confidence 9999999999776444 556777888888889999999999999887654210 124566777777667776
Q ss_pred ccCCcccchHHHHHHHHHHHHC
Q 044791 509 FRNPTLYRDDEKLKALNQMKES 530 (623)
Q Consensus 509 ~~~~~~~~~~eal~~~~~M~~~ 530 (623)
. +.+.++.++|.+.
T Consensus 557 ~--------~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 557 L--------NSVRTLEKRFFEK 570 (679)
T ss_dssp S--------HHHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHHHHh
Confidence 5 5778888777655
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0001 Score=65.66 Aligned_cols=91 Identities=13% Similarity=-0.077 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHc
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADN 356 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~ 356 (623)
+..+...+.+.|++++|+++|+++++.. +.+...|..+..+|.+.|++++|+..|++... .+...|..+..+|...
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4445555666666666666666666543 22455666666666666666666666665543 2334556666666666
Q ss_pred CChHHHHHHHHHHHH
Q 044791 357 GLGDEGLQLFEQMRK 371 (623)
Q Consensus 357 g~~eeA~~l~~eM~~ 371 (623)
|++++|+..|++.++
T Consensus 100 g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 100 GDLDGAESGFYSARA 114 (142)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.92 E-value=6e-05 Score=62.66 Aligned_cols=91 Identities=13% Similarity=0.051 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh
Q 044791 315 NNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ-PNEQTFLAVFSACGS 390 (623)
Q Consensus 315 y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~-Pd~~ty~~li~a~~~ 390 (623)
+..+...+.+.|++++|+..|++..+ .+...|..+...+...|++++|+..|++..+.... .+...+..+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 33444444444555555554444432 22334455555555555555555555555543210 024455555555555
Q ss_pred c-CCHHHHHHHHHHHH
Q 044791 391 A-DAIEEAFIHFESMK 405 (623)
Q Consensus 391 ~-g~~e~A~~l~~~m~ 405 (623)
. |++++|++.++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 89 IEGKEVEAEIAEARAK 104 (112)
T ss_dssp CSSCSHHHHHHHHHHG
T ss_pred HhCCHHHHHHHHHHHh
Confidence 5 55555555555555
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00025 Score=61.78 Aligned_cols=95 Identities=8% Similarity=-0.053 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a 387 (623)
+...|..+...+.+.|++++|+..|++..+ .+...|..+..+|...|++++|+..|++..+.... +...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 566777777777777777777777776653 23456777777777777777777777777765322 45666677777
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 044791 388 CGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~ 406 (623)
+...|++++|+..|+...+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 7777777777777776664
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00015 Score=64.55 Aligned_cols=94 Identities=13% Similarity=0.045 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSAC 388 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~ 388 (623)
...+..+...+.+.|++++|+.+|++... .+...|..+..+|.+.|++++|+..|++..+... -+...+..+..+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence 34555666777777777877777777654 2445677777777777777777777777776532 2445666677777
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 044791 389 GSADAIEEAFIHFESMKS 406 (623)
Q Consensus 389 ~~~g~~e~A~~l~~~m~~ 406 (623)
...|++++|+..|+...+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777777664
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=4.2e-05 Score=66.58 Aligned_cols=87 Identities=11% Similarity=0.113 Sum_probs=41.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAI 394 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~ 394 (623)
+...+.+.|++++|+..|++..+ .+...|..+..++...|++++|+..|++.++.... +...+..+..++...|++
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 34444455555555555554433 13334555555555555555555555555443211 334444444455555555
Q ss_pred HHHHHHHHHHH
Q 044791 395 EEAFIHFESMK 405 (623)
Q Consensus 395 e~A~~l~~~m~ 405 (623)
++|+..|++..
T Consensus 102 ~~A~~~~~~al 112 (121)
T 1hxi_A 102 NAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.88 E-value=7.2e-05 Score=81.50 Aligned_cols=120 Identities=14% Similarity=0.012 Sum_probs=82.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcC
Q 044791 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNG 357 (623)
Q Consensus 281 ~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g 357 (623)
..+...+.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|++.|++..+. +..+|..+..+|...|
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334456677888888888888888753 235788888888888888888888888877653 4457888888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 044791 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSA--CGSADAIEEAFIHFE 402 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a--~~~~g~~e~A~~l~~ 402 (623)
++++|++.|++..+.... +...+..+..+ +.+.|++++|+++++
T Consensus 89 ~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888888775321 22334444434 677788888888876
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00072 Score=73.90 Aligned_cols=197 Identities=8% Similarity=-0.069 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHH-HHHHH
Q 044791 360 DEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEA-QQFIE 438 (623)
Q Consensus 360 eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A-~~lf~ 438 (623)
+.+..+|++++... .-+...|...+..+...|++++|..+|++.... |..... --.|+...+.++. ..+++
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~----P~~~~l---~~~y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM----SDGMFL---SLYYGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSSHH---HHHHHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcHHH---HHHHHhhcchhHHHHHHHH
Confidence 34667888887653 335677777777788899999999999999853 543321 1123332221222 12222
Q ss_pred hhCC-C-------CC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHH--HHhhhcCc
Q 044791 439 QKLP-F-------EP---TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAI--SILDGKSR 505 (623)
Q Consensus 439 ~~m~-~-------~P---d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~--~li~~~~~ 505 (623)
. .. . .+ ....|...+..+.+.++.+.|..+++.. . .+. .+...|. +.+.....
T Consensus 268 ~-~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~-----------~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 268 K-YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG-----------VGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp H-TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC-----------CCHHHHHHHHHHHHHHH
T ss_pred H-HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC-----------CChHHHHHHHHHHHHHC
Confidence 2 11 0 01 1245667777777788899999999888 2 111 1122333 33333221
Q ss_pred cccccCCcccchHHHHHHHHHHHHCCcccCcc-eeeeccCHHHHHHHHHHHHhHHHHHHhcccCCCCChhHHHhhH----
Q 044791 506 LVEFRNPTLYRDDEKLKALNQMKESTYVPDTR-YVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNL---- 580 (623)
Q Consensus 506 ~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~-t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~~~~~i~~~l---- 580 (623)
++. +.|.++|+...+.- |+.. .+...+ +...+.|..+.|..+++.... ...++..+
T Consensus 334 -~d~--------~~ar~ife~al~~~--~~~~~~~~~yi-------d~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE 394 (493)
T 2uy1_A 334 -GSR--------ATPYNIFSSGLLKH--PDSTLLKEEFF-------LFLLRIGDEENARALFKRLEK-TSRMWDSMIEYE 394 (493)
T ss_dssp -CCS--------HHHHHHHHHHHHHC--TTCHHHHHHHH-------HHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHH
T ss_pred -CCh--------HHHHHHHHHHHHHC--CCCHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 123 68999996665432 3322 122222 345566777788888777643 24555443
Q ss_pred hhhcchhHHHHHHHHHh
Q 044791 581 RVCGDCHNAIKIMSRIV 597 (623)
Q Consensus 581 ~~~g~~~~a~~l~~~~~ 597 (623)
...|+...+.+++.+..
T Consensus 395 ~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 395 FMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHSCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55688888877777766
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.85 E-value=4.5e-05 Score=63.43 Aligned_cols=95 Identities=18% Similarity=0.090 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVL 424 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~ 424 (623)
.|..+...+...|++++|+..|++..+... .+..++..+..++...|++++|+..|++..+...-..+...+..+..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 445555555666666666666666555421 2344555555555555666666665555553210000234445555555
Q ss_pred Hhc-CCHHHHHHHHHhh
Q 044791 425 GKC-GHLFEAQQFIEQK 440 (623)
Q Consensus 425 ~k~-g~~e~A~~lf~~~ 440 (623)
.+. |++++|++.|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARA 103 (112)
T ss_dssp TTCSSCSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 555 5555555555553
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.83 E-value=2.9e-05 Score=84.72 Aligned_cols=119 Identities=10% Similarity=0.011 Sum_probs=82.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044791 316 NKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD 392 (623)
Q Consensus 316 ~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g 392 (623)
..+...|.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|+..|++.++... -+..+|..+..+|...|
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 3345566677888888888887754 3455888888888888888888888888887632 25677788888888888
Q ss_pred CHHHHHHHHHHHHhhcCCCC-CccchhhHHHH--HHhcCCHHHHHHHHH
Q 044791 393 AIEEAFIHFESMKSEFGISP-GTEHYLGLVGV--LGKCGHLFEAQQFIE 438 (623)
Q Consensus 393 ~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~--~~k~g~~e~A~~lf~ 438 (623)
++++|++.|++..+. .| +...+..+..+ +.+.|++++|+++++
T Consensus 89 ~~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888887753 33 23344445444 777788888888888
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00013 Score=64.27 Aligned_cols=99 Identities=14% Similarity=0.051 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-Cccc
Q 044791 342 SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN----EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEH 416 (623)
Q Consensus 342 ~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd----~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~t 416 (623)
+...|..+...+...|++++|+.+|++..+. .|+ ...|..+..+|...|++++|+..++..... .| +...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHH
Confidence 3446666666677777777777777776653 444 455666666666677777777777666632 22 3445
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHhhCCCCC
Q 044791 417 YLGLVGVLGKCGHLFEAQQFIEQKLPFEP 445 (623)
Q Consensus 417 y~~Li~~~~k~g~~e~A~~lf~~~m~~~P 445 (623)
+..+..+|...|++++|..+|++++...|
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 55666666666666666666666444344
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.80 E-value=7e-05 Score=81.80 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=67.3
Q ss_pred HhCCCCHHHHHHHHHHHHHc--C-CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----------CCh-HHHHH
Q 044791 287 CGNPKWYENAKKVHDYFLQS--T-IRG----DLVLNNKVIEMYGKCGSMTDARRVFDHMAD----------RSM-DSWHL 348 (623)
Q Consensus 287 ~~~~g~~~~A~~l~~~m~~~--g-~~p----d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~----------~~~-~tyn~ 348 (623)
+...|++++|+.++++.++. . +.+ ...++++|..+|...|++++|+.++++..+ +++ .+|+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666655442 0 111 145666666666666666666666665542 111 25666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKL-----GL-QPNE-QTFLAVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~-----g~-~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
|...|...|++++|+.+|++.++. |- .|++ .+.+.+-.++.+.+++++|+.+|.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665531 21 1222 23444455556666777777777666653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00013 Score=79.64 Aligned_cols=116 Identities=8% Similarity=-0.057 Sum_probs=57.4
Q ss_pred HcCCHHHHHHHHHHhhcC----------C-hHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----C-CCCC-HHHHHHHH
Q 044791 324 KCGSMTDARRVFDHMADR----------S-MDSWHLMINGYADNGLGDEGLQLFEQMRKL-----G-LQPN-EQTFLAVF 385 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~~----------~-~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~-----g-~~Pd-~~ty~~li 385 (623)
..|++++|+.++++..+. + ..+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 445556665555544320 1 115566666666666666666666555431 1 1122 24555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHh----hcCCC-C-CccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 386 SACGSADAIEEAFIHFESMKS----EFGIS-P-GTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 386 ~a~~~~g~~e~A~~l~~~m~~----~~g~~-p-~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
..|...|++++|+.++++..+ .+|-. | ...+.+.|-.++...|++++|+.+|.+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~ 460 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHK 460 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666655554442 11211 1 123344444555555566666666555
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00011 Score=79.62 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CC---------------hHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMAD---RS---------------MDSWHLMINGYADNGLGDEGLQLFEQMRKLG 373 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~---------------~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g 373 (623)
...|..+...|.+.|++++|+..|++..+ .+ ..+|..+..+|.+.|++++|+..|++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45666777777777777777777776643 12 2455555555556666666666665555542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHH
Q 044791 374 LQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQ 434 (623)
Q Consensus 374 ~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~ 434 (623)
. -+...|..+..+|...|++++|+..|++.. .+.| +...+..+..++.+.|+.++|.
T Consensus 348 p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al---~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVL---EVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 134455555555555555555555555554 2333 2344444555555555555444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00042 Score=74.95 Aligned_cols=144 Identities=14% Similarity=-0.038 Sum_probs=98.1
Q ss_pred CCHHHHHHHHHcCCC--C-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHH
Q 044791 260 GKVKEAIELMDKGVK--A-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD--------------LVLNNKVIEMY 322 (623)
Q Consensus 260 g~~~~A~~l~~~~~~--p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd--------------~~~y~~Li~~y 322 (623)
+++++|++.|+..+. | ....|..+...+.+.|++++|+..|++.++..-.-. ..+|..+..+|
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544322 2 234677788888888888888888888877422211 57788888888
Q ss_pred HHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 044791 323 GKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAF 398 (623)
Q Consensus 323 ~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~ 398 (623)
.+.|++++|+..|++..+ .+...|..+..+|...|++++|+..|++.++. .| +...+..+..++.+.++.++|.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887764 34557888888888888888888888888764 44 3456667777777777777665
Q ss_pred -HHHHHHH
Q 044791 399 -IHFESMK 405 (623)
Q Consensus 399 -~l~~~m~ 405 (623)
.++..|.
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 3444444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00023 Score=61.81 Aligned_cols=86 Identities=6% Similarity=-0.170 Sum_probs=38.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChH
Q 044791 284 FELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGD 360 (623)
Q Consensus 284 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~e 360 (623)
...+.+.|++++|+..|++.++.. +-+...|..+..++.+.|++++|+..|++..+. +...|..+..+|...|+++
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 334444444444444444444432 113444444444444444444444444444321 2234444444444445555
Q ss_pred HHHHHHHHHH
Q 044791 361 EGLQLFEQMR 370 (623)
Q Consensus 361 eA~~l~~eM~ 370 (623)
+|+..|++.+
T Consensus 103 ~A~~~~~~al 112 (121)
T 1hxi_A 103 AALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00023 Score=61.35 Aligned_cols=86 Identities=22% Similarity=0.097 Sum_probs=36.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----ccchhhHHHHH
Q 044791 351 NGYADNGLGDEGLQLFEQMRKLGLQPN--EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG----TEHYLGLVGVL 424 (623)
Q Consensus 351 ~~~~~~g~~eeA~~l~~eM~~~g~~Pd--~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~----~~ty~~Li~~~ 424 (623)
..+...|++++|+..|+++.+...... ...+..+..++...|++++|...|+.+... .|+ ...+..+..+|
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHH
Confidence 334444444444444444444321100 023334444444445555555555444432 121 22333444444
Q ss_pred HhcCCHHHHHHHHHh
Q 044791 425 GKCGHLFEAQQFIEQ 439 (623)
Q Consensus 425 ~k~g~~e~A~~lf~~ 439 (623)
.+.|++++|...|++
T Consensus 87 ~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 455555555555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00046 Score=76.83 Aligned_cols=169 Identities=12% Similarity=0.040 Sum_probs=125.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHhhcC---ChHHHHHHHHHHHHcC
Q 044791 291 KWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS----------MTDARRVFDHMADR---SMDSWHLMINGYADNG 357 (623)
Q Consensus 291 g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~----------~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g 357 (623)
..-++|+++++++++.... +..+|+.--.++.+.|+ +++|++.++++.+. +..+|+.-..++.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 3446788888888886432 56777777666766666 88888888888753 4457888888888888
Q ss_pred --ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhc------
Q 044791 358 --LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD-AIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKC------ 427 (623)
Q Consensus 358 --~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g-~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~------ 427 (623)
++++|++++++|.+...+ +..+|+.-..++.+.| .++++++.++.+++ ..| +...|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~---~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---TTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCCCccHHHHHHHHHHhhcccccc
Confidence 668899999998887543 6777877777777888 88888888888873 344 566677666666553
Q ss_pred --------CCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChh
Q 044791 428 --------GHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDID 464 (623)
Q Consensus 428 --------g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~ 464 (623)
+.+++|++++++++...| |...|..+-..+...++.+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 568999999999777667 5688888877777766644
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.69 E-value=9.6e-05 Score=63.38 Aligned_cols=82 Identities=10% Similarity=0.012 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHH
Q 044791 290 PKWYENAKKVHDYFLQSTI--RGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQ 364 (623)
Q Consensus 290 ~g~~~~A~~l~~~m~~~g~--~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~ 364 (623)
.|++++|+..|++.++.+. +-+..++..|..+|.+.|++++|+..|++..+. +...|..+..+|...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 3455555555555555321 112344455555555555555555555544331 23344555555555555555555
Q ss_pred HHHHHHH
Q 044791 365 LFEQMRK 371 (623)
Q Consensus 365 l~~eM~~ 371 (623)
.|++.++
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00012 Score=75.87 Aligned_cols=150 Identities=10% Similarity=-0.021 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADN 356 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~ 356 (623)
...+..+...+.+.|++++|+..|++.++. .|+... +...|+.+++...+. ..+|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH------HHHHHHHHHHHHHc
Confidence 355777888888889999999999888774 344321 223344444443331 23677788888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccchhhHHHHH-HhcCCHHHHH
Q 044791 357 GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEHYLGLVGVL-GKCGHLFEAQ 434 (623)
Q Consensus 357 g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~-~k~g~~e~A~ 434 (623)
|++++|+..|++.++.. .-+...|..+..+|...|++++|+..|++.. .+.|+ ...+..|.... ...+..+++.
T Consensus 244 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al---~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ---KYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT---C---------------------------
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887753 1256777778888888888888888887776 34443 33444444432 2345566677
Q ss_pred HHHHhhCCCCC
Q 044791 435 QFIEQKLPFEP 445 (623)
Q Consensus 435 ~lf~~~m~~~P 445 (623)
.+|.+++...|
T Consensus 320 ~~~~~~l~~~p 330 (338)
T 2if4_A 320 EMYKGIFKGKD 330 (338)
T ss_dssp -----------
T ss_pred HHHHHhhCCCC
Confidence 77776444444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.65 E-value=6.8e-05 Score=77.76 Aligned_cols=151 Identities=9% Similarity=0.019 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA 391 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~ 391 (623)
...+..+...|.+.|++++|+..|++....+.... .+...|+++++...+. ..+|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45577788888888888888888887664332211 1222333444433221 13788899999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHH-HHHcCChhHHHH
Q 044791 392 DAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWEALRNY-ARIHGDIDLEDH 468 (623)
Q Consensus 392 g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~~Li~a-~~~~g~~~~A~~ 468 (623)
|++++|+..++..++. .| +...|..+..+|...|++++|+..|++++.+.|+. ..+..|... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999853 44 56788899999999999999999999987877754 445544444 234456676777
Q ss_pred HHHHHHhcCCCC
Q 044791 469 AEELMVDLDPSK 480 (623)
Q Consensus 469 ~~~~~~~m~~~~ 480 (623)
.++.+....+..
T Consensus 321 ~~~~~l~~~p~~ 332 (338)
T 2if4_A 321 MYKGIFKGKDEG 332 (338)
T ss_dssp ------------
T ss_pred HHHHhhCCCCCC
Confidence 777777666553
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00029 Score=73.99 Aligned_cols=111 Identities=6% Similarity=-0.039 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNG 357 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g 357 (623)
..+..+...+.+.|++++|++.|++.++. .++. ......+++.+ +...+..+|..+..+|.+.|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~~~~----~~~~~~~~~~nla~~~~~~g 287 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADGAK----LQPVALSCVLNIGACKLKMS 287 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHHGG----GHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHHHHH----HHHHHHHHHHHHHHHHHhcc
Confidence 34666666666777777777777666551 0000 00000000000 01112234555555555555
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
++++|+..+++.++... -+...|..+..+|...|++++|++.|++..
T Consensus 288 ~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al 334 (370)
T 1ihg_A 288 DWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQ 334 (370)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55555555555554321 134455555555555555555555555554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00053 Score=62.12 Aligned_cols=95 Identities=12% Similarity=0.003 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------C---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQS--------T---------IRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD 340 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~--------g---------~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~ 340 (623)
..+..+...+.+.|++++|++.|.+.++. . -.-+..+|..+..+|.+.|++++|+..+++..+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34556666666777777777777666553 0 011235566666666666777777666666543
Q ss_pred ---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 341 ---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 341 ---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
.+...|..+..+|...|++++|+..|++.++.
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 23446666666666667777776666666654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00047 Score=62.48 Aligned_cols=93 Identities=14% Similarity=0.035 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---------------------ChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMADR---------------------SMDSWHLMINGYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---------------------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~ 370 (623)
...+..+...+.+.|++++|+..|.+..+. +...|..+..+|.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666777777788888888777765432 11245555555555555555555555555
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 371 KLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 371 ~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
+.. .-+...|..+..+|...|++++|...|+...
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 432 1134455555555555555555555555544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00027 Score=60.83 Aligned_cols=95 Identities=14% Similarity=-0.039 Sum_probs=78.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc----cchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC----HHHHHHH
Q 044791 382 LAVFSACGSADAIEEAFIHFESMKSEFGISPGT----EHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT----AEFWEAL 453 (623)
Q Consensus 382 ~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~----~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd----~~ty~~L 453 (623)
..+...+...|++++|...|+.+.+. .|+. ..+..+..+|.+.|++++|+..|++++...|+ ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 34566788899999999999999864 3332 36777888999999999999999996655564 5678888
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 454 RNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 454 i~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
..+|...|+.++|...++.+.+..+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 88999999999999999999887655
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0001 Score=63.26 Aligned_cols=99 Identities=7% Similarity=-0.042 Sum_probs=51.5
Q ss_pred cCCHHHHHHHHHHhhcCC---h---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044791 325 CGSMTDARRVFDHMADRS---M---DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAF 398 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~~~---~---~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~ 398 (623)
.|++++|+..|++..+.+ . ..|..|..+|...|++++|+..|++.++.... +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666655441 2 25566666666666666666666666654322 3455555666666666666666
Q ss_pred HHHHHHHhhcCCCCCccchhhHHHHH
Q 044791 399 IHFESMKSEFGISPGTEHYLGLVGVL 424 (623)
Q Consensus 399 ~l~~~m~~~~g~~p~~~ty~~Li~~~ 424 (623)
..|++......-.++...|...|..|
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 66666554322233333344444333
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0004 Score=63.59 Aligned_cols=61 Identities=16% Similarity=0.095 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc-----CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKL-----GLQPNE-QTF----LAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~-----g~~Pd~-~ty----~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
.|+.+..++.+.|++++|+..|++.++. .+.|+. ..| .....++...|++++|+..|+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444555555554444444442 113432 344 555555555566666655555554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0005 Score=72.24 Aligned_cols=132 Identities=8% Similarity=-0.055 Sum_probs=77.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 044791 249 SVADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSM 328 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~ 328 (623)
+..+...|.+.|++++|++.|++.+....... .....+++. +. -.-+..+|..+..+|.+.|++
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~--------~~~~~~~~~-------~~-~~~~~~~~~nla~~~~~~g~~ 289 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR--------AAAEDADGA-------KL-QPVALSCVLNIGACKLKMSDW 289 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------HHSCHHHHG-------GG-HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc--------cccChHHHH-------HH-HHHHHHHHHHHHHHHHhccCH
Confidence 55667788899999999999876443110000 000111111 10 011345666777777777777
Q ss_pred HHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 044791 329 TDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAF 398 (623)
Q Consensus 329 ~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~ 398 (623)
++|++.|++..+. +...|..+..+|...|++++|+..|++.++. .| +...+..+..++...++.+++.
T Consensus 290 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 290 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766543 3446777777777777777777777777664 23 4445555555555555555544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00054 Score=62.77 Aligned_cols=98 Identities=10% Similarity=-0.043 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cC
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQP------N-----EQTFLAVFSACGSADAIEEAFIHFESMKSE----FG 409 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P------d-----~~ty~~li~a~~~~g~~e~A~~l~~~m~~~----~g 409 (623)
.+..+...+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++.++- ..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34445555666666666666666665532110 1 226777777777777777777777766631 11
Q ss_pred CCCC-ccch----hhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 410 ISPG-TEHY----LGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 410 ~~p~-~~ty----~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
+.|+ ...| ..+..+|...|++++|+..|+++++
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2553 3455 6667777777777777777777443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0039 Score=69.27 Aligned_cols=153 Identities=7% Similarity=-0.056 Sum_probs=123.2
Q ss_pred CCHHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044791 326 GSMTDARRVFDHMADRS---MDSWHLMINGYADNGL----------GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD 392 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~~---~~tyn~Li~~~~~~g~----------~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g 392 (623)
..-++|++.++++.+.+ ...|+.--.++...|+ +++|+++++++.+...+ +..+|+.-.-++.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 34578899999987643 3478888888888877 99999999999987543 6778888888888889
Q ss_pred --CHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcC-CHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHc-------
Q 044791 393 --AIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCG-HLFEAQQFIEQKLPFEP-TAEFWEALRNYARIH------- 460 (623)
Q Consensus 393 --~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g-~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~------- 460 (623)
+++++++.++.+.+. .| +...|+.-..++.+.| ..+++++.++++++..| |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 789999999999964 33 6778888888888888 89999999999777666 678898888877763
Q ss_pred -------CChhHHHHHHHHHHhcCCCCCC
Q 044791 461 -------GDIDLEDHAEELMVDLDPSKAD 482 (623)
Q Consensus 461 -------g~~~~A~~~~~~~~~m~~~~~~ 482 (623)
+.++++.+.++...+++|.+..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~s 227 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQS 227 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence 4468888888888888887643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.28 E-value=0.01 Score=64.64 Aligned_cols=198 Identities=14% Similarity=0.069 Sum_probs=129.5
Q ss_pred HHHHHHHcC---CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHhh
Q 044791 264 EAIELMDKG---VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR-RVFDHMA 339 (623)
Q Consensus 264 ~A~~l~~~~---~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~-~lf~~m~ 339 (623)
.+..+|++. +.-+...|-..+.-+.+.|++++|.++|++.++. +.+...|. .|+...+.++.. .+++...
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~ 270 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHH
Confidence 344566542 2334566777777788889999999999999987 33333332 233322211211 1111110
Q ss_pred ------------cCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 044791 340 ------------DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFL--AVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 340 ------------~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~--~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
......|-..+..+.+.+..+.|..+|++.... ..+...|. +.+...+ .++.+.|..+|+...
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~--~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al 347 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNE--GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGL 347 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHH
Confidence 001135777777777888999999999999221 12334443 2333322 347999999999999
Q ss_pred hhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 406 SEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 406 ~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
+.++-. ...+...++...+.|+.+.|..+|++ .. .....|...+..-...|+.+.+.++++...+
T Consensus 348 ~~~~~~--~~~~~~yid~e~~~~~~~~aR~l~er-~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKHPDS--TLLKEEFFLFLLRIGDEENARALFKR-LE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHH-SC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH-HH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 764332 33456677888889999999999999 42 3678888888887889999988887777654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0054 Score=54.35 Aligned_cols=107 Identities=8% Similarity=-0.070 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-ChHHHHHHHHHHHH----cCChHHHHHHH
Q 044791 292 WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR-SMDSWHLMINGYAD----NGLGDEGLQLF 366 (623)
Q Consensus 292 ~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-~~~tyn~Li~~~~~----~g~~eeA~~l~ 366 (623)
++++|+++|++..+.| .++.. |..+|...+.+++|++.|++..+. +...+..|...|.. .+++++|+..|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 4556666666665555 22222 555555555566666666655433 33455555555555 55666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 044791 367 EQMRKLGLQPNEQTFLAVFSACGS----ADAIEEAFIHFESMKS 406 (623)
Q Consensus 367 ~eM~~~g~~Pd~~ty~~li~a~~~----~g~~e~A~~l~~~m~~ 406 (623)
++..+.| +...+..|...|.. .++.++|++.|+...+
T Consensus 85 ~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 85 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 6665543 34455555555555 5566666666655553
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00036 Score=58.14 Aligned_cols=88 Identities=10% Similarity=-0.114 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--C-------hHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR--S-------MDSWH 347 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~--~-------~~tyn 347 (623)
...+..+...+.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++|++.|++..+. + ...+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3455666666666666666666666666642 224566666666666666666666666665432 1 22344
Q ss_pred HHHHHHHHcCChHHHHHH
Q 044791 348 LMINGYADNGLGDEGLQL 365 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l 365 (623)
.+..++...|++++|+..
T Consensus 83 ~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHhHhhhHhH
Confidence 444445555554444433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00092 Score=59.45 Aligned_cols=111 Identities=11% Similarity=0.035 Sum_probs=91.0
Q ss_pred cCCHHHHHHHHHcCCCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 044791 259 EGKVKEAIELMDKGVKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK----CGSMTDARR 333 (623)
Q Consensus 259 ~g~~~~A~~l~~~~~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k----~g~~~~A~~ 333 (623)
.+++++|++.|++.... +.... |...|...+.+++|+++|++..+.| +...+..|..+|.. .++.++|++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 35688999999652211 22233 7778888889999999999999976 67889999999998 899999999
Q ss_pred HHHHhhcC-ChHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCC
Q 044791 334 VFDHMADR-SMDSWHLMINGYAD----NGLGDEGLQLFEQMRKLGL 374 (623)
Q Consensus 334 lf~~m~~~-~~~tyn~Li~~~~~----~g~~eeA~~l~~eM~~~g~ 374 (623)
.|++..+. +..++..|...|.. .+++++|+..|++..+.|.
T Consensus 83 ~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99988764 55688999999999 8999999999999998864
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.002 Score=54.47 Aligned_cols=76 Identities=12% Similarity=0.117 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 295 NAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 295 ~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
+|++.|++.++.. +-+...+..+..+|.+.|++++|+..|++..+ .+...|..+..+|...|++++|...|++.++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666666643 23567777777777777777777777776654 2344677777777777777777777777665
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0013 Score=54.56 Aligned_cols=65 Identities=18% Similarity=0.148 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 044791 379 QTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 379 ~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd 446 (623)
..+..+...+...|++++|++.|++..+. .| +...|..+..+|.+.|++++|++.|++++.+.|+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 34444455555555555555555555432 22 3344445555555555555555555554444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0031 Score=67.60 Aligned_cols=81 Identities=7% Similarity=0.011 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhc----------CCh-HHHHHHHH
Q 044791 290 PKWYENAKKVHDYFLQS---TIRGD----LVLNNKVIEMYGKCGSMTDARRVFDHMAD----------RSM-DSWHLMIN 351 (623)
Q Consensus 290 ~g~~~~A~~l~~~m~~~---g~~pd----~~~y~~Li~~y~k~g~~~~A~~lf~~m~~----------~~~-~tyn~Li~ 351 (623)
.|++++|+.++++.++. -+.++ ..++++|..+|...|++++|+.++++..+ +++ .+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45566666666655442 11111 35556666666666666666666655532 111 15666666
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 044791 352 GYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 352 ~~~~~g~~eeA~~l~~eM~ 370 (623)
.|...|++++|+.+|++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666665554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.016 Score=66.43 Aligned_cols=156 Identities=15% Similarity=0.197 Sum_probs=106.1
Q ss_pred HHHHHcCCHHHHHH-HHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044791 254 ARLCQEGKVKEAIE-LMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR 332 (623)
Q Consensus 254 ~~~~~~g~~~~A~~-l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~ 332 (623)
......+++++|++ ++. .+. +......++..+.+.|..++|+++.+... .-.......|++++|+
T Consensus 607 ~~~~~~~~~~~a~~~~l~-~i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLP-NVE-GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHHTTCHHHHHHHTGG-GCC-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHH
T ss_pred hHHHHhCCHHHHHHHHHh-cCC-chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHH
Confidence 34456899999988 552 222 13344788888888999999987763211 1134556789999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 044791 333 RVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP 412 (623)
Q Consensus 333 ~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p 412 (623)
++.+.+ .+...|..|...+.+.|+++.|+++|.++.. |..+...+...|+.+...++-+..... |
T Consensus 673 ~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~--- 737 (814)
T 3mkq_A 673 DLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G--- 737 (814)
T ss_dssp HHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T---
T ss_pred HHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C---
Confidence 997666 3567999999999999999999999998763 334445555566666655555444432 2
Q ss_pred CccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 413 GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 413 ~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
-++.-..+|.+.|++++|+++|.+ ++
T Consensus 738 ---~~~~A~~~~~~~g~~~~a~~~~~~-~~ 763 (814)
T 3mkq_A 738 ---KFNLAFNAYWIAGDIQGAKDLLIK-SQ 763 (814)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHH-TT
T ss_pred ---chHHHHHHHHHcCCHHHHHHHHHH-cC
Confidence 234445556667777777777777 44
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0019 Score=54.64 Aligned_cols=76 Identities=12% Similarity=0.001 Sum_probs=44.9
Q ss_pred HHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 330 DARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 330 ~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
+|++.|++..+ .+...|..+...|...|++++|+..|++.++... -+...|..+..+|...|++++|...|+...+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555443 2344666666666666667777666666665421 1345566666666666666666666666553
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00056 Score=62.53 Aligned_cols=97 Identities=18% Similarity=0.052 Sum_probs=54.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhcCCCCC-ccchhhHHHHH
Q 044791 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA----------IEEAFIHFESMKSEFGISPG-TEHYLGLVGVL 424 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~----------~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~ 424 (623)
.+.+++|+..+++..+.... +...|+.+..++...++ +++|+..|++.+ .+.|+ ...|..|..+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL---~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---LIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH---HhCcCcHHHHHHHHHHH
Confidence 33444455555444443211 33444444444444433 346666666665 34453 44566666666
Q ss_pred Hhc-----------CCHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 044791 425 GKC-----------GHLFEAQQFIEQKLPFEPTAEFWEALRNY 456 (623)
Q Consensus 425 ~k~-----------g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a 456 (623)
... |++++|++.|++++.+.|+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 655 47888888888877777876666554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.012 Score=46.68 Aligned_cols=58 Identities=17% Similarity=0.313 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
.+..+...|.+.|++++|+..|++..+ .+...|..+..++.+.|++++|+..|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333444444444444444444443322 1222444444444444444444444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.011 Score=46.87 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGY 353 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~ 353 (623)
...+..+...+...|++++|++.|++.++.. +.+..++..+..+|.+.|++++|+..|++..+. +...+..+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456777777888888888888888887753 235677788888888888888888888877542 344566665555
Q ss_pred HHc
Q 044791 354 ADN 356 (623)
Q Consensus 354 ~~~ 356 (623)
.+.
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0082 Score=64.22 Aligned_cols=61 Identities=11% Similarity=0.007 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKL-----G-LQPN-EQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~-----g-~~Pd-~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
+++.|..+|...|++++|+.+++++++. | -.|+ ..+++.|...|...|++++|+.++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4444444444445555554444444321 1 1111 2344444445555555555554444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.011 Score=48.73 Aligned_cols=62 Identities=10% Similarity=0.030 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~ 339 (623)
...+..+..++.+.|++++|++.|++.++... -+..+|..|..+|.+.|++++|++.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44556666666666666666666666666432 234566666666666666666666666543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0048 Score=51.07 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
+..++..+..+|.+.|++++|++.|++..+. +...|..+..+|...|++++|+..|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555666666666666666666666665432 334566666666666666666666666543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0043 Score=66.45 Aligned_cols=83 Identities=7% Similarity=-0.064 Sum_probs=59.6
Q ss_pred HcCCHHHHHHHHHHhhc-------C---Ch-HHHHHHHHHHHHcCChHHHHHHHHHHHHc-----C-CCCC-HHHHHHHH
Q 044791 324 KCGSMTDARRVFDHMAD-------R---SM-DSWHLMINGYADNGLGDEGLQLFEQMRKL-----G-LQPN-EQTFLAVF 385 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~-------~---~~-~tyn~Li~~~~~~g~~eeA~~l~~eM~~~-----g-~~Pd-~~ty~~li 385 (623)
..|++++|+.++++..+ + ++ .+++.|..+|...|++++|+.++++.++. | -.|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34778888888877643 1 11 27888888888888888888888887642 2 2233 35778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 044791 386 SACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 386 ~a~~~~g~~e~A~~l~~~m~~ 406 (623)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888776653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0029 Score=57.75 Aligned_cols=94 Identities=15% Similarity=0.094 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHhhcC---ChHHHHHHHHHHHHc-
Q 044791 291 KWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS----------MTDARRVFDHMADR---SMDSWHLMINGYADN- 356 (623)
Q Consensus 291 g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~----------~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~- 356 (623)
+.+++|++.+++.++.. +-+...|..+..++...++ +++|+..|++..+. +..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 34556666666665543 2255666666666655544 34666666666542 334666677776665
Q ss_pred ----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 357 ----------GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387 (623)
Q Consensus 357 ----------g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a 387 (623)
|++++|+..|++.++. .|+...|...+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4788888888888774 6666666555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.012 Score=63.05 Aligned_cols=92 Identities=13% Similarity=0.085 Sum_probs=68.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cC-CCC-Cccc
Q 044791 350 INGYADNGLGDEGLQLFEQMRKLG---LQPN----EQTFLAVFSACGSADAIEEAFIHFESMKSE----FG-ISP-GTEH 416 (623)
Q Consensus 350 i~~~~~~g~~eeA~~l~~eM~~~g---~~Pd----~~ty~~li~a~~~~g~~e~A~~l~~~m~~~----~g-~~p-~~~t 416 (623)
+..+.+.|++++|+.++++.++.. +.++ ..+++.|..+|...|++++|+.+++++..- +| -.| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667888999999998887542 2232 457888888999999999999888877642 12 122 3567
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHhhC
Q 044791 417 YLGLVGVLGKCGHLFEAQQFIEQKL 441 (623)
Q Consensus 417 y~~Li~~~~k~g~~e~A~~lf~~~m 441 (623)
|+.|...|...|++++|+.+|++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888899999999999999888844
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.087 Score=54.66 Aligned_cols=64 Identities=16% Similarity=-0.042 Sum_probs=29.5
Q ss_pred ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 414 TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 414 ~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
..+|.++..++...|++++|+..+++++.+.|+...|..+-..+...|+.++|.+.++....+.
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3344444434444455555555555443334444444444444444555555555554444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.027 Score=58.49 Aligned_cols=74 Identities=12% Similarity=-0.020 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHH
Q 044791 375 QPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWE 451 (623)
Q Consensus 375 ~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~ 451 (623)
..+..+|..+...+...|++++|...++++..- + |+...|..+...+.-.|+.++|.+.|++++.+.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-E--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 346667766666666667888888888777744 3 6666666666667777888888888877776677776654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.029 Score=64.11 Aligned_cols=45 Identities=16% Similarity=0.017 Sum_probs=20.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044791 354 ADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESM 404 (623)
Q Consensus 354 ~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m 404 (623)
...|++++|+++.+++ .+...|..|...+.+.|+++.|+++|..+
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3444555554443222 13344445555555555555555554443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.034 Score=45.02 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
.|..+..+|...|++++|+..|++.++
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444444444444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.013 Score=47.70 Aligned_cols=57 Identities=19% Similarity=0.082 Sum_probs=38.3
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 044791 283 LFELCGNPKWYENAKKVHDYFLQSTIRGDLV-LNNKVIEMYGKCGSMTDARRVFDHMAD 340 (623)
Q Consensus 283 Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-~y~~Li~~y~k~g~~~~A~~lf~~m~~ 340 (623)
....+.+.|++++|++.|+++++.. .-+.. .+..+..+|.+.|++++|++.|++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445566677777777777777653 22455 677777777777777777777777654
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0006 Score=78.21 Aligned_cols=6 Identities=17% Similarity=0.224 Sum_probs=0.8
Q ss_pred HHHHHH
Q 044791 313 VLNNKV 318 (623)
Q Consensus 313 ~~y~~L 318 (623)
.+||.+
T Consensus 398 ls~Nil 403 (727)
T 4b8c_D 398 LSYNTL 403 (727)
T ss_dssp ----CC
T ss_pred eecccc
Confidence 344443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.67 Score=42.75 Aligned_cols=129 Identities=10% Similarity=0.035 Sum_probs=79.8
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044791 320 EMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 320 ~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~ 399 (623)
.....+|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... |..+.--|.-.|+.++..+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3455678888888887766 4566788888888888888888888877653 3344444555677666555
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 044791 400 HFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELM 473 (623)
Q Consensus 400 l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~ 473 (623)
+-+....+ | -++.-...+.-.|+++++.++|.+ .+.-|.. +-.....|..+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~-~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAE-GGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHH-TTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHH-CCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 54443322 2 245555667778888888888888 5522211 11122356666555555544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.09 E-value=1.5 Score=40.32 Aligned_cols=128 Identities=15% Similarity=0.076 Sum_probs=78.3
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHH
Q 044791 286 LCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQL 365 (623)
Q Consensus 286 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l 365 (623)
.....|+++.|.++.+++ -+...|..|.....+.|+++-|++.|..... |..|.-.|.-.|+.++..++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHH
Confidence 344667788887776655 2567788888888888888888888877753 33444445556666665555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHh-cCCHHHHHHHHHhhCC
Q 044791 366 FEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGK-CGHLFEAQQFIEQKLP 442 (623)
Q Consensus 366 ~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k-~g~~e~A~~lf~~~m~ 442 (623)
-+.....| -++.....+...|+++++.++|.+.- ..| +...+++ .|-.+.|.++.+. ++
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~----r~~-------eA~~~A~t~g~~~~a~~~~~~-~~ 142 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG----SLP-------LAYAVAKANGDEAAASAFLEQ-AE 142 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT----CHH-------HHHHHHHHTTCHHHHHHHHHH-TT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC----ChH-------HHHHHHHHcCcHHHHHHHHHH-hC
Confidence 44444443 24555555666788888877775443 111 1222222 4666777777766 44
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.078 Score=53.02 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=38.2
Q ss_pred ccchhhHHHHHHhc-----CCHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHc-CChhHHHHHHHHHHhcCCC
Q 044791 414 TEHYLGLVGVLGKC-----GHLFEAQQFIEQKLPFEPT--AEFWEALRNYARIH-GDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 414 ~~ty~~Li~~~~k~-----g~~e~A~~lf~~~m~~~Pd--~~ty~~Li~a~~~~-g~~~~A~~~~~~~~~m~~~ 479 (623)
...|..|...|.+. |+.++|.++|++++.+.|+ ..++......++.. |+.+++.+.++......+.
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 34555666666663 6666666666665555552 45555555555553 6666666666666665444
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=94.38 E-value=3.1 Score=42.34 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=60.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKV----HDYFLQSTIRGDLVLNNKVIEMYGKCG 326 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l----~~~m~~~g~~pd~~~y~~Li~~y~k~g 326 (623)
++...|.+.+++++|++++-.| ...+.+.|....|-++ ++-+.+.++++|......|+..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 6778889999999999886432 2233344554444433 455556678888877777777776654
Q ss_pred CHH-HHHHHHHHhh----------cCChHHHHHHHHHHHHcCChHHHHHHH
Q 044791 327 SMT-DARRVFDHMA----------DRSMDSWHLMINGYADNGLGDEGLQLF 366 (623)
Q Consensus 327 ~~~-~A~~lf~~m~----------~~~~~tyn~Li~~~~~~g~~eeA~~l~ 366 (623)
.-+ +=.++.+++. ..|......+...|.+.+++.+|...|
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 311 1112222221 123445555566666666666665555
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.37 E-value=0.29 Score=44.01 Aligned_cols=83 Identities=6% Similarity=-0.046 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHhhcCC-h----HHHHHHHHHHHHcCChHHHH
Q 044791 292 WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG---SMTDARRVFDHMADRS-M----DSWHLMINGYADNGLGDEGL 363 (623)
Q Consensus 292 ~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g---~~~~A~~lf~~m~~~~-~----~tyn~Li~~~~~~g~~eeA~ 363 (623)
.+..+.+-|.+..+.|. ++..+...+.-++++.+ ++++++.+|++..+.+ . ..+-.|.-+|.+.|++++|.
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 45667777777777665 68888888888999988 6779999999887655 2 35666777889999999999
Q ss_pred HHHHHHHHcCCCCC
Q 044791 364 QLFEQMRKLGLQPN 377 (623)
Q Consensus 364 ~l~~eM~~~g~~Pd 377 (623)
+.++.+++. .|+
T Consensus 92 ~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 92 KYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHH--CTT
T ss_pred HHHHHHHhc--CCC
Confidence 999999885 664
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=94.35 E-value=2.2 Score=43.11 Aligned_cols=106 Identities=11% Similarity=0.085 Sum_probs=63.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKK----VHDYFLQSTIRGDLVLNNKVIEMYGKCG 326 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~----l~~~m~~~g~~pd~~~y~~Li~~y~k~g 326 (623)
++...|.+.+++++|++++..| ...+.+.|....|-+ +.+-..+.++.+|......|+..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 6777888888888888876443 223334455544444 3445555677777777777777766543
Q ss_pred CHH-HHHHHHHHhh----------cCChHHHHHHHHHHHHcCChHHHHHHHH
Q 044791 327 SMT-DARRVFDHMA----------DRSMDSWHLMINGYADNGLGDEGLQLFE 367 (623)
Q Consensus 327 ~~~-~A~~lf~~m~----------~~~~~tyn~Li~~~~~~g~~eeA~~l~~ 367 (623)
.-+ +=.++++++. ..+...+..+...|.+.|++.+|...|-
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 211 1122222222 1245567777777788888777777653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.25 E-value=0.36 Score=39.99 Aligned_cols=63 Identities=10% Similarity=0.009 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQST------IRGDLVLNNKVIEMYGKCGSMTDARRVFDHM 338 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g------~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m 338 (623)
+...+..|...+.+.|+++.|...|+..++.- -.....++..|..+|.+.|++++|+.++++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 33344455555555555555555555544320 0122344444555555555555555554444
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.22 E-value=4.1 Score=35.82 Aligned_cols=138 Identities=12% Similarity=0.023 Sum_probs=77.7
Q ss_pred HcCCHHHHHHHHHcCCCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 258 QEGKVKEAIELMDKGVKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFD 336 (623)
Q Consensus 258 ~~g~~~~A~~l~~~~~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~ 336 (623)
-.|.+++..++..+-+.+ +..-||-+|.-....-+-+-..++++.+-+ -.|. ..+|++......|-
T Consensus 19 ldG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi~C~~ 85 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVVECGV 85 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHHHHHH
Confidence 345555656655543333 223344444444444444444444433322 1121 23444444444443
Q ss_pred HhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 044791 337 HMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGIS 411 (623)
Q Consensus 337 ~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~ 411 (623)
.+- .+..-.+..++.+...|+-|.-.+++.+++. ...|+......+..||.+.|+..+|.+++.+..++ |++
T Consensus 86 ~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 86 INN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred Hhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence 332 2334556667777888888888888877543 34667777777888888888888888888877765 653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.05 E-value=0.36 Score=43.42 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhcCCCC--CccchhhHHHHHHhcCCHHHH
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD---AIEEAFIHFESMKSEFGISP--GTEHYLGLVGVLGKCGHLFEA 433 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g---~~e~A~~l~~~m~~~~g~~p--~~~ty~~Li~~~~k~g~~e~A 433 (623)
...+.+-|.+..+.|. ++..+...+..++++.+ ++++++.+|++..+. . .| ....+-.|.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 4566677777776665 67777778888888888 677999999998865 3 23 234445567788999999999
Q ss_pred HHHHHhhCCCCCCH
Q 044791 434 QQFIEQKLPFEPTA 447 (623)
Q Consensus 434 ~~lf~~~m~~~Pd~ 447 (623)
.++++.+++++|+-
T Consensus 91 ~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCCC
Confidence 99999977778854
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.84 E-value=0.0019 Score=68.67 Aligned_cols=232 Identities=13% Similarity=0.102 Sum_probs=165.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG 326 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g 326 (623)
.+|..|..+..+.+++.+|++-|-+.- |...|..+|.++.+.|.+++-++++...++.. .+..+=+.|+-+|+|.+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA~--Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKAD--DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 130 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCCS--CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSC
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhC
Confidence 445577888899999999998885543 34478999999999999999999987776653 34556678999999999
Q ss_pred CHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------------------CCCCCHHHHHHHHH
Q 044791 327 SMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL--------------------GLQPNEQTFLAVFS 386 (623)
Q Consensus 327 ~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~--------------------g~~Pd~~ty~~li~ 386 (623)
++.+-++++ ..+++.-...+.+-|...|.++.|.-+|..+..- .-.-+..||--+-.
T Consensus 131 rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ 207 (624)
T 3lvg_A 131 RLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF 207 (624)
T ss_dssp SSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTH
T ss_pred cHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 977644432 2356666677777788888888887777654321 01236678999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCChhH
Q 044791 387 ACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE-PTAEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 387 a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~-Pd~~ty~~Li~a~~~~g~~~~ 465 (623)
+|...+.+..|--.--.++ ........|+.-|-+.|.++|-+.+++..++.+ ...-.|+-|.-.|++- +.+
T Consensus 208 ACvd~~EfrLAqicGLniI------vhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~Pe- 279 (624)
T 3lvg_A 208 ACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQ- 279 (624)
T ss_dssp HHHHSCTTTTTTHHHHHHH------CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTT-
T ss_pred HHhCchHHHHHHHhcchhc------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHH-
Confidence 9999998877655443333 233445568888999999999999999977744 5788999998888866 455
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccc
Q 044791 466 EDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEF 509 (623)
Q Consensus 466 A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~ 509 (623)
++.+.++-.-.+. -.-.+|++|.....|
T Consensus 280 --KlmEHlklf~sri--------------NipKviracE~ahLW 307 (624)
T 3lvg_A 280 --KMREHLELFWSRV--------------NIPKVLRAAEQAHLW 307 (624)
T ss_dssp --HHHHHHTTSSSSS--------------CCTTTHHHHTTTTCH
T ss_pred --HHHHHHHHHHHhc--------------cHHHHHHHHHHHhhH
Confidence 5555554432221 222467777777776
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.50 E-value=0.39 Score=39.77 Aligned_cols=65 Identities=11% Similarity=0.012 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-----CCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC
Q 044791 381 FLAVFSACGSADAIEEAFIHFESMKSEFGI-----SPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP 445 (623)
Q Consensus 381 y~~li~a~~~~g~~e~A~~l~~~m~~~~g~-----~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P 445 (623)
+..|...+.+.|+++.|...|+...+...- .....++..|..+|.+.|++++|+.++++++.+.|
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 334444444455555555444444432100 11223444555555555555555555555443444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.37 E-value=1.5 Score=35.52 Aligned_cols=62 Identities=5% Similarity=-0.101 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 311 DLVLNNKVIEMYGKCGS---MTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~---~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
|...+..+..++...++ .++|..+|++..+. ++.....+...+.+.|++++|+..|+++++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555543333 45555555555432 2334555555555555555555555555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=91.98 E-value=0.91 Score=36.92 Aligned_cols=67 Identities=7% Similarity=-0.139 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC
Q 044791 275 ADASCFYTLFELCGNPKW---YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRS 342 (623)
Q Consensus 275 pd~~ty~~Ll~~~~~~g~---~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~ 342 (623)
.|...+..+..++...++ .++|..++++.++.. +-++.....|...+.+.|++++|+..|+++.+.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 355566666666654433 688999998888864 2357788888888889999999999999887643
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=91.11 E-value=0.97 Score=45.15 Aligned_cols=88 Identities=11% Similarity=0.150 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHhhc--C--ChHHHHHHHHHHHHc-CCh
Q 044791 293 YENAKKVHDYFLQSTIRGD---LVLNNKVIEMYGKC-----GSMTDARRVFDHMAD--R--SMDSWHLMINGYADN-GLG 359 (623)
Q Consensus 293 ~~~A~~l~~~m~~~g~~pd---~~~y~~Li~~y~k~-----g~~~~A~~lf~~m~~--~--~~~tyn~Li~~~~~~-g~~ 359 (623)
+..|..++++.++ +.|+ -..|..|...|.+. |+.++|.+.|++..+ + ++.++......+++. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4566677777777 4565 45788888888884 888888888887764 3 366777777877774 888
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHH
Q 044791 360 DEGLQLFEQMRKLGLQ--PNEQTFL 382 (623)
Q Consensus 360 eeA~~l~~eM~~~g~~--Pd~~ty~ 382 (623)
++|.++|++.+..... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888887666 6644333
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.46 E-value=10 Score=40.19 Aligned_cols=182 Identities=12% Similarity=0.091 Sum_probs=117.7
Q ss_pred CCHHHHHHHH---Hc------CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCCCCHHH--HHHHHHHHHHcCC
Q 044791 260 GKVKEAIELM---DK------GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQ-STIRGDLVL--NNKVIEMYGKCGS 327 (623)
Q Consensus 260 g~~~~A~~l~---~~------~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~~--y~~Li~~y~k~g~ 327 (623)
|++++|++.+ ++ ...-.......++..|.+.|+++...+.+..+.+ .|......+ ...++..+.....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 7789998876 22 3344566788899999999999999888776654 344333222 1223333333333
Q ss_pred HHH--HHHHHHHhhc---C-------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHh
Q 044791 328 MTD--ARRVFDHMAD---R-------SMDSWHLMINGYADNGLGDEGLQLFEQMRKL--GLQPN---EQTFLAVFSACGS 390 (623)
Q Consensus 328 ~~~--A~~lf~~m~~---~-------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~--g~~Pd---~~ty~~li~a~~~ 390 (623)
.+. -+.+.+.... . .......|...|...|++.+|..++.++... |.... ...|...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 332 2223322211 0 0114566888899999999999999998632 32222 3466777888999
Q ss_pred cCCHHHHHHHHHHHHhhc-CC--CCC--ccchhhHHHHHHhcCCHHHHHHHHHhhC
Q 044791 391 ADAIEEAFIHFESMKSEF-GI--SPG--TEHYLGLVGVLGKCGHLFEAQQFIEQKL 441 (623)
Q Consensus 391 ~g~~e~A~~l~~~m~~~~-g~--~p~--~~ty~~Li~~~~k~g~~e~A~~lf~~~m 441 (623)
.+++..|..++..+..+. .. .|+ ...|..++..+...+++.+|...|.+++
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999998875321 11 122 3456777888888999999999888833
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.27 E-value=2.3 Score=44.32 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hcCCCCCcc
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS----EFGISPGTE 415 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~----~~g~~p~~~ 415 (623)
...++.++...|++++|+..+..+.... .-+...|-.+|.++.+.|+..+|++.|+.+.+ +.|+.|...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3345555666666666666666665442 22555666666666666666666666665443 235555443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.08 E-value=17 Score=36.56 Aligned_cols=140 Identities=18% Similarity=0.075 Sum_probs=91.0
Q ss_pred HHHHHHcCCHHHHHHH-------HH-cCCCCCHHHHHHHHHHHhCCCCHH-HHHHHHHHHH----HcC--CCCCHHHHHH
Q 044791 253 LARLCQEGKVKEAIEL-------MD-KGVKADASCFYTLFELCGNPKWYE-NAKKVHDYFL----QST--IRGDLVLNNK 317 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l-------~~-~~~~pd~~ty~~Ll~~~~~~g~~~-~A~~l~~~m~----~~g--~~pd~~~y~~ 317 (623)
...+.+.|+...|-++ |+ .++.+|.....-|+..+..-..-+ .=.+++++++ +.| -.-|...+..
T Consensus 60 a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ 139 (312)
T 2wpv_A 60 ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNT 139 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHH
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Confidence 4456778998888765 33 488899988888888876643211 2234445554 332 2247899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADN---GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAI 394 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~---g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~ 394 (623)
+...|.+.|++.+|+..|-.-...+...+..++.-+... |...++.-+.-+ ++| -|.-.|++
T Consensus 140 ~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R--------------aVL-~yL~l~n~ 204 (312)
T 2wpv_A 140 IGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR--------------LVF-NYLFISNI 204 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------HHH-HHHHTTBH
T ss_pred HHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------HHH-HHHHhcCH
Confidence 999999999999999987522222455666666665555 554443222222 222 34457899
Q ss_pred HHHHHHHHHHHhh
Q 044791 395 EEAFIHFESMKSE 407 (623)
Q Consensus 395 e~A~~l~~~m~~~ 407 (623)
..|..+|+...++
T Consensus 205 ~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 205 SFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=89.48 E-value=15 Score=38.34 Aligned_cols=220 Identities=12% Similarity=0.055 Sum_probs=135.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHc-----CCCC---CHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC--CCC---HHH
Q 044791 249 SVADLARLCQEGKVKEAIELMDK-----GVKA---DASCFYTLFELCGNP-KWYENAKKVHDYFLQSTI--RGD---LVL 314 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~~-----~~~p---d~~ty~~Ll~~~~~~-g~~~~A~~l~~~m~~~g~--~pd---~~~ 314 (623)
...|...|++.|+.++..+++.. +.-+ .......||+.+... +..+.-.++..+.++..- ... ..+
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778889999999999999964 1122 224577888888775 455666666666554211 111 112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhc----CC-----hHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCHHHHHH
Q 044791 315 NNKVIEMYGKCGSMTDARRVFDHMAD----RS-----MDSWHLMINGYADNGLGDEGLQLFEQMRKL--GLQPNEQTFLA 383 (623)
Q Consensus 315 y~~Li~~y~k~g~~~~A~~lf~~m~~----~~-----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~--g~~Pd~~ty~~ 383 (623)
=..|+..|...|++.+|.+++.++.+ .| +..|-.-+..|...+++.++..++...... .+.++...-..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 23689999999999999999988864 11 226888888999999999999999888642 23234333322
Q ss_pred H----HHHHH-hcCCHHHHHHHHHHHHhhcCCCC-----CccchhhHHHHHHhcCCHHHHHHHHHh----hCCCCCCHHH
Q 044791 384 V----FSACG-SADAIEEAFIHFESMKSEFGISP-----GTEHYLGLVGVLGKCGHLFEAQQFIEQ----KLPFEPTAEF 449 (623)
Q Consensus 384 l----i~a~~-~~g~~e~A~~l~~~m~~~~g~~p-----~~~ty~~Li~~~~k~g~~e~A~~lf~~----~m~~~Pd~~t 449 (623)
+ ...+. ..+++..|...|-+..+.+.-.- +...|..|...+. ++..+...++.. .. ..|+...
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~--~~r~el~~~l~~~~~~~~-~~pei~~ 258 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML--GQSDDVNQLVSGKLAITY-SGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHSHHHHTT-CSHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc--CCHHHHHHHhcccccccc-CCccHHH
Confidence 2 22355 78999999988877765443111 1223433333332 222222222221 02 3466667
Q ss_pred HHHHHHHHHHcCChhHHHHHHHH
Q 044791 450 WEALRNYARIHGDIDLEDHAEEL 472 (623)
Q Consensus 450 y~~Li~a~~~~g~~~~A~~~~~~ 472 (623)
+..|+.+|. .+++.....+++.
T Consensus 259 l~~L~~a~~-~~dl~~f~~iL~~ 280 (394)
T 3txn_A 259 MKSVAEASH-KRSLADFQAALKE 280 (394)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCHHHHHHHHHH
Confidence 777777764 6777744444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.26 E-value=3 Score=36.07 Aligned_cols=84 Identities=7% Similarity=-0.054 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHhhcCC-h----HHHHHHHHHHHHcCChHHH
Q 044791 291 KWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTD---ARRVFDHMADRS-M----DSWHLMINGYADNGLGDEG 362 (623)
Q Consensus 291 g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~---A~~lf~~m~~~~-~----~tyn~Li~~~~~~g~~eeA 362 (623)
..+..+.+-|.+....|. ++..+-..+.-++.+....++ ++.+++++.+.+ . ...-.|.-|+.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 345556666666666554 677777778888888776655 888888887655 2 1455567778888999999
Q ss_pred HHHHHHHHHcCCCCC
Q 044791 363 LQLFEQMRKLGLQPN 377 (623)
Q Consensus 363 ~~l~~eM~~~g~~Pd 377 (623)
.+.++.+++. .|+
T Consensus 94 ~~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQT--EPQ 106 (126)
T ss_dssp HHHHHHHHHH--CTT
T ss_pred HHHHHHHHHh--CCC
Confidence 9888888875 554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.49 E-value=4 Score=46.29 Aligned_cols=125 Identities=13% Similarity=0.120 Sum_probs=82.5
Q ss_pred HHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhhc-----------CChH-
Q 044791 279 CFYTLFELCGNPKW-YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG-SMTDARRVFDHMAD-----------RSMD- 344 (623)
Q Consensus 279 ty~~Ll~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g-~~~~A~~lf~~m~~-----------~~~~- 344 (623)
....|++.+...++ ++.|..+|+++.+....-+......+|..+.+.+ +--+|.+++.+..+ .+..
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34566777777777 5889999999988643222333334444444433 23345555544321 2221
Q ss_pred ---------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 345 ---------SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN-EQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 345 ---------tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd-~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
..+.=...|...|+++-|+++-++.+.. .|+ -.||-.|..+|...|++|.|+-.++.+-
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1111133477789999999999998875 565 5899999999999999999999988773
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.18 E-value=4.7 Score=48.32 Aligned_cols=145 Identities=10% Similarity=-0.018 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-----------------
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRG----------------- 310 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p----------------- 310 (623)
....++..+.+.+..+.|.++..- +.-+....-.+..+|...|++++|.++|.+.-. |+..
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~-~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhh-ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 344567777888888888776532 344555556677788889999999999976421 1110
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----CCh----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 044791 311 ------DLVLNNKVIEMYGKCGSMTDARRVFDHMAD----RSM----DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP 376 (623)
Q Consensus 311 ------d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~----~~~----~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P 376 (623)
-..-|..++..+-+.+..+.|+++-....+ .+. ..|..+.+++...|++++|...+-.+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 123477889999999999888876654332 222 16899999999999999999999888765443
Q ss_pred CHHHHHHHHHHHHhcCCHHH
Q 044791 377 NEQTFLAVFSACGSADAIEE 396 (623)
Q Consensus 377 d~~ty~~li~a~~~~g~~e~ 396 (623)
......||..+|+.|.++.
T Consensus 971 -~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHH
T ss_pred -HHHHHHHHHHHHhCCChhh
Confidence 4556667777777666543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.49 E-value=4.4 Score=45.96 Aligned_cols=124 Identities=10% Similarity=0.016 Sum_probs=79.7
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHhhcCChH--H-HH-HHHHHHHHcC-ChHHHHHHHHHHHHc------CCCC-CHH--
Q 044791 315 NNKVIEMYGKCGS-MTDARRVFDHMADRSMD--S-WH-LMINGYADNG-LGDEGLQLFEQMRKL------GLQP-NEQ-- 379 (623)
Q Consensus 315 y~~Li~~y~k~g~-~~~A~~lf~~m~~~~~~--t-yn-~Li~~~~~~g-~~eeA~~l~~eM~~~------g~~P-d~~-- 379 (623)
...|+..+...|+ ++.|+.+|+++.+.+.. . |. ++|..+...+ +--+|..++.+.++. .+.+ +..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3455555555666 68899999998776543 2 22 2333322222 233566666655431 1222 111
Q ss_pred ---HH-HHH----HHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 380 ---TF-LAV----FSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 380 ---ty-~~l----i~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
.+ ..| ...|...|+++.|+++-.+.. .+.| +..+|..|..+|.+.|+++.|+-.++. +.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV---~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS-cP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTST---ELALDSFESWYNLARCHIKKEEYEKALFAINS-MP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH-SC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHH---hcCchhhHHHHHHHHHHHHhccHHHHHHHHhc-CC
Confidence 01 112 334667899999999999887 5566 578999999999999999999999988 54
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.59 E-value=2.4 Score=44.18 Aligned_cols=107 Identities=16% Similarity=0.217 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc--CC-CCCH------------------HHHHHHHHHHHHcCCHHH
Q 044791 275 ADASCFYTLFELCG---NPKWYENAKKVHDYFLQS--TI-RGDL------------------VLNNKVIEMYGKCGSMTD 330 (623)
Q Consensus 275 pd~~ty~~Ll~~~~---~~g~~~~A~~l~~~m~~~--g~-~pd~------------------~~y~~Li~~y~k~g~~~~ 330 (623)
.|...|..++.... ..|+.+.|.+.+.+++.. |- -++. .+...++.++...|+.++
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 45566766665433 357888888888887764 21 1111 123346677788999999
Q ss_pred HHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHH-----HcCCCCCHHHH
Q 044791 331 ARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMR-----KLGLQPNEQTF 381 (623)
Q Consensus 331 A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~-----~~g~~Pd~~ty 381 (623)
|+..+..+... +...|..||.+|.+.|+..+|++.|+++. +.|+.|+..+-
T Consensus 190 a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 190 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99998887653 45599999999999999999999999975 45999987754
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=83.92 E-value=5.5 Score=34.41 Aligned_cols=69 Identities=9% Similarity=-0.016 Sum_probs=34.2
Q ss_pred CCccchhhHHHHHHhcCCHHH---HHHHHHhhCCCC-C-CH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 412 PGTEHYLGLVGVLGKCGHLFE---AQQFIEQKLPFE-P-TA-EFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 412 p~~~ty~~Li~~~~k~g~~e~---A~~lf~~~m~~~-P-d~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
++..+--.+..++++.....+ ++.++++.+... | +. ...-.|.-++.+.|+++.|.+.++.+.+++|.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 334444444555555444333 555555533322 2 11 222233345666666666666666666666554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.70 E-value=7.2 Score=41.38 Aligned_cols=241 Identities=9% Similarity=-0.028 Sum_probs=139.3
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHH-----cCCCCCHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMD-----KGVKADASC 279 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~-----~~~~pd~~t 279 (623)
..|+++.|++.+-.+.+..... .....+......++..|...|+++...+.+. +|......+
T Consensus 28 ~~~~~~~a~e~ll~lEK~~r~~-------------~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~ 94 (445)
T 4b4t_P 28 AQNDCNSALDQLLVLEKKTRQA-------------SDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ 94 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSS-------------CSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhhhc-------------cchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH
Confidence 4578888988876653311111 1122234566688889999999999876652 243333322
Q ss_pred --HHHHHHHHhCCCCHHHH--HHHHHHHHH--cC-CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-----CC--
Q 044791 280 --FYTLFELCGNPKWYENA--KKVHDYFLQ--ST-IRG---DLVLNNKVIEMYGKCGSMTDARRVFDHMAD-----RS-- 342 (623)
Q Consensus 280 --y~~Ll~~~~~~g~~~~A--~~l~~~m~~--~g-~~p---d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~-----~~-- 342 (623)
...++..+......+.. ..+.+.... .| +-. .......|...|-..|++.+|.+++.++.. .+
T Consensus 95 ~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~ 174 (445)
T 4b4t_P 95 YMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMS 174 (445)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHH
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHH
Confidence 22233333223333322 222221111 11 111 134456789999999999999999998752 11
Q ss_pred --hHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc
Q 044791 343 --MDSWHLMINGYADNGLGDEGLQLFEQMRK----LGLQPN--EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGT 414 (623)
Q Consensus 343 --~~tyn~Li~~~~~~g~~eeA~~l~~eM~~----~g~~Pd--~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~ 414 (623)
+..|...+..|...+++.+|..++.++.. ....|+ ..-|..++..+...+++.+|...|.++...+...-|.
T Consensus 175 ~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~ 254 (445)
T 4b4t_P 175 EKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDE 254 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCH
Confidence 23788888999999999999999998753 222222 2456777778888999999998888877543333333
Q ss_pred cchhhH-----HHHH-HhcCC--HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 044791 415 EHYLGL-----VGVL-GKCGH--LFEAQQFIEQKLPFEPTAEFWEALRNYARIH 460 (623)
Q Consensus 415 ~ty~~L-----i~~~-~k~g~--~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~ 460 (623)
..+..+ +.+. +..+. .+-.-.++.. - .-++...|..|+.+|...
T Consensus 255 ~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~-~-~~~~l~~~~~L~k~f~~~ 306 (445)
T 4b4t_P 255 AKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQND-N-NLKKLESQESLVKLFTTN 306 (445)
T ss_dssp HHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHH-S-SCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhc-c-cccccHHHHHHHHHHHhc
Confidence 222221 1111 11221 2222223332 1 124667888999998754
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=83.69 E-value=3.8 Score=39.31 Aligned_cols=206 Identities=11% Similarity=0.028 Sum_probs=103.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHc
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADAS---CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV--LNNKVIEMYGKC 325 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~---ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~y~~Li~~y~k~ 325 (623)
+.+...++.|+++....+++.|..++.. .-.+.+...+..|+.+- ++.+++.|..++.. .-.+.+...++.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 5677788999999998899887665432 11234444455677654 44455556554321 112344555667
Q ss_pred CCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH------------HHHHHHHHHh
Q 044791 326 GSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQT------------FLAVFSACGS 390 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~t------------y~~li~a~~~ 390 (623)
|+.+-+..+++.-... +...++.|. ..+..|..+ +++.+.+.|..++... -.+.+...+.
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 157 (285)
T 1wdy_A 83 GSVKLLKLFLSKGADVNECDFYGFTAFM-EAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCBCTTCCBHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCccCcccCCHHH-HHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHH
Confidence 8877766666542221 222233333 335566644 4445556665554220 1133444556
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCC---ccchhhHHHHHHhcCC---HHHHHHHHHhhCCCCCCHH--HHHHHHHHHHHcCC
Q 044791 391 ADAIEEAFIHFESMKSEFGISPG---TEHYLGLVGVLGKCGH---LFEAQQFIEQKLPFEPTAE--FWEALRNYARIHGD 462 (623)
Q Consensus 391 ~g~~e~A~~l~~~m~~~~g~~p~---~~ty~~Li~~~~k~g~---~e~A~~lf~~~m~~~Pd~~--ty~~Li~a~~~~g~ 462 (623)
.|..+-+..+++. .|..++ ....+.|..+ +..|. ..+..+++-+ .+..++.. .-.+.+...+..|+
T Consensus 158 ~~~~~~v~~Ll~~----~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~ 231 (285)
T 1wdy_A 158 KGHVEVLKILLDE----MGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKH 231 (285)
T ss_dssp HTCHHHHHHHHHT----SCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTC
T ss_pred cCCHHHHHHHHHh----cCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCC
Confidence 6777655555432 244443 2334444444 34444 2445555544 33222221 11223344456777
Q ss_pred hhHHHHHHHHHHh
Q 044791 463 IDLEDHAEELMVD 475 (623)
Q Consensus 463 ~~~A~~~~~~~~~ 475 (623)
.+ +.+.+.+
T Consensus 232 ~~----~v~~Ll~ 240 (285)
T 1wdy_A 232 LG----LVQRLLE 240 (285)
T ss_dssp HH----HHHHHHH
T ss_pred HH----HHHHHHh
Confidence 75 4444444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.09 E-value=10 Score=45.38 Aligned_cols=59 Identities=8% Similarity=-0.084 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC---ccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 381 FLAVFSACGSADAIEEAFIHFESMKSEFGISPG---TEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 381 y~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~---~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
|..++..+.+.+.++.+.++-...++..+-..+ ...|..+..++...|++++|...+-.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 344444444455555544444433322111110 11344444555555555555444433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=81.68 E-value=11 Score=33.68 Aligned_cols=99 Identities=10% Similarity=0.177 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHHcCCh------HHHHHHHHHHHHcCCCCCH----HHHHHHHH---HHHhcCCHHHHHHHHHHHHhh
Q 044791 341 RSMDSWHLMINGYADNGLG------DEGLQLFEQMRKLGLQPNE----QTFLAVFS---ACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 341 ~~~~tyn~Li~~~~~~g~~------eeA~~l~~eM~~~g~~Pd~----~ty~~li~---a~~~~g~~e~A~~l~~~m~~~ 407 (623)
.|..+|-..|..+-+.|+. ++..++|++.... +.|+. ..|--|.- .+...+++++|.++|+.++..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555666666666666766 6666677766653 34421 11111111 122347788888888887753
Q ss_pred cCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 408 FGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 408 ~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
+-.- ...|.....--.+.|++.+|.+++.++++
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 2222 44444444445667888888888888554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=81.63 E-value=21 Score=37.08 Aligned_cols=164 Identities=10% Similarity=-0.005 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHc-CCHHHHHHHHHHhhc---CChHHH---
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQS-TIRG---DLVLNNKVIEMYGKC-GSMTDARRVFDHMAD---RSMDSW--- 346 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-g~~p---d~~~y~~Li~~y~k~-g~~~~A~~lf~~m~~---~~~~ty--- 346 (623)
.+...|...|.+.|+.++..+++..++.. +..+ .......||+.+... +..+.-.++..+..+ ..-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778889999999999999988776432 1111 345667888888775 445555555554432 111123
Q ss_pred ---HHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCCCCccch
Q 044791 347 ---HLMINGYADNGLGDEGLQLFEQMRKLGLQPN-----EQTFLAVFSACGSADAIEEAFIHFESMKSEF-GISPGTEHY 417 (623)
Q Consensus 347 ---n~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd-----~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~-g~~p~~~ty 417 (623)
.-|+..|...|++.+|..++.++.+.=-+.| ...|..-+..|...+++.++...+....... .+.++..+-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2578889999999999999999986311212 2345666778889999999999998776432 222333222
Q ss_pred hh----HHHHHH-hcCCHHHHHHHHHhhC
Q 044791 418 LG----LVGVLG-KCGHLFEAQQFIEQKL 441 (623)
Q Consensus 418 ~~----Li~~~~-k~g~~e~A~~lf~~~m 441 (623)
.. -.-++. ..+++.+|...|-+++
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 11 122345 7899999998887743
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.19 E-value=6.4 Score=32.55 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHH
Q 044791 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGV 423 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~ 423 (623)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.|-. ..+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHHH
Confidence 344566666677777788999999999999999999999999998888664433 4457776643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 623 | ||||
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 7e-05 | |
| d1k3va_ | 542 | b.121.5.2 (A:) Parvovirus (panleukopenia virus) ca | 0.001 |
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.0 bits (100), Expect = 7e-05
Identities = 30/232 (12%), Positives = 69/232 (29%), Gaps = 15/232 (6%)
Query: 264 EAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG 323
EA + +++ K A + + A +++ + + ++ +++L +
Sbjct: 55 EAAQYLEQSSKLLAEKGDMNNA----KLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110
Query: 324 KCGSMTDARRVFDHMADRSMDSWHLMINGYAD----NGLGDEGLQLFEQMRKLGLQPNEQ 379
+++ + L+ Y G +F++ R+ +
Sbjct: 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV 170
Query: 380 TFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIE- 438
A + AF FE ++G P L + L + E
Sbjct: 171 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY--VLAYIDYLSHLNEDNNTRVLFER 228
Query: 439 ----QKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKI 486
LP E + E W + GD+ E+ + + K+
Sbjct: 229 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKET 280
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 623 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.66 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.65 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.46 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.4 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.09 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.95 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.94 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.92 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.92 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.87 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.76 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.74 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.69 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.62 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.57 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.55 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.52 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.34 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.16 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.14 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.11 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.1 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.08 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.8 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.78 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.76 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.72 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.67 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.67 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.63 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.61 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.59 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.57 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.52 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.49 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.46 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.46 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.42 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.37 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.32 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.31 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.29 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.24 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.2 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.15 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.97 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.96 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.74 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.67 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.57 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.47 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.44 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.34 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.02 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.59 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.51 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 85.39 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=4.4e-15 Score=151.80 Aligned_cols=199 Identities=11% Similarity=0.042 Sum_probs=165.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYA 354 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~ 354 (623)
..+..+...+...|++++|...+++.++.. +-+..+|..+..+|...|++++|+..|+++.. .....|..+...+.
T Consensus 170 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (388)
T d1w3ba_ 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHH
Confidence 445566677778888888888888887753 23577888889999999999999999987764 34557888999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHH
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQ 434 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~ 434 (623)
+.|++++|+..|++..+... -+..++..+..++...|++++|++.++..... ...+...+..+..+|.+.|++++|+
T Consensus 249 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 325 (388)
T d1w3ba_ 249 EQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHH
Confidence 99999999999999988632 25678888999999999999999999988753 3346677888899999999999999
Q ss_pred HHHHhhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 435 QFIEQKLPFEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 435 ~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
++|++++.+.|+ ..+|..+..+|...|++++|.+.++...+++|+.
T Consensus 326 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 372 (388)
T d1w3ba_ 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999998887885 5678889999999999999999999999987654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=4.9e-15 Score=151.47 Aligned_cols=88 Identities=10% Similarity=0.065 Sum_probs=74.3
Q ss_pred HHHHHHHcCCHHHHHHHHHcC--CCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 044791 252 DLARLCQEGKVKEAIELMDKG--VKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSM 328 (623)
Q Consensus 252 li~~~~~~g~~~~A~~l~~~~--~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~ 328 (623)
+...+.+.|++++|+++|++. ..| +..++..+..+|.+.|++++|+.+|+++++.. +-+..+|..+..+|.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 456678899999999999752 234 46788999999999999999999999999864 33678999999999999999
Q ss_pred HHHHHHHHHhhc
Q 044791 329 TDARRVFDHMAD 340 (623)
Q Consensus 329 ~~A~~lf~~m~~ 340 (623)
++|+..|..+.+
T Consensus 84 ~~A~~~~~~~~~ 95 (388)
T d1w3ba_ 84 QEAIEHYRHALR 95 (388)
T ss_dssp HHHHHHHHHHHH
T ss_pred cccccccccccc
Confidence 999999987754
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2.6e-12 Score=129.52 Aligned_cols=228 Identities=12% Similarity=0.001 Sum_probs=186.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHcC--CCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 044791 251 ADLARLCQEGKVKEAIELMDKG--VKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS 327 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~--~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~ 327 (623)
.....+.+.|++++|++.|++. ..| +..+|..+..++...|++++|+..|++.++.. +-+...|..++.+|.+.|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 4566788999999999999863 344 46789999999999999999999999999864 2368899999999999999
Q ss_pred HHHHHHHHHHhhcCCh------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHH
Q 044791 328 MTDARRVFDHMADRSM------------------DSWHLMINGYADNGLGDEGLQLFEQMRKLGL-QPNEQTFLAVFSAC 388 (623)
Q Consensus 328 ~~~A~~lf~~m~~~~~------------------~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~-~Pd~~ty~~li~a~ 388 (623)
+++|+++|+++...+. ..+...+..+...+.+++|...|.+..+... ..+..++..+...+
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 9999999998764211 1222234445666788999999998886532 34677888899999
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHH
Q 044791 389 GSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLE 466 (623)
Q Consensus 389 ~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A 466 (623)
...|++++|+..|+..... .| +...|..+..+|.+.|++++|++.|++++...| +..+|..|..+|...|++++|
T Consensus 183 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999998853 34 467888899999999999999999999777666 567899999999999999999
Q ss_pred HHHHHHHHhcCCCCCC
Q 044791 467 DHAEELMVDLDPSKAD 482 (623)
Q Consensus 467 ~~~~~~~~~m~~~~~~ 482 (623)
...++...++.++...
T Consensus 260 ~~~~~~al~l~p~~~~ 275 (323)
T d1fcha_ 260 VEHFLEALNMQRKSRG 275 (323)
T ss_dssp HHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHhCCcChh
Confidence 9999999998877654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=8.4e-12 Score=125.63 Aligned_cols=227 Identities=10% Similarity=-0.013 Sum_probs=179.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCC
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGL 358 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~ 358 (623)
.....+.+.|++++|+++|+++++.. +-+..+|..|..+|...|++++|+..|++..+ .+...|..++..|...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence 45667889999999999999999964 23688999999999999999999999998765 355689999999999999
Q ss_pred hHHHHHHHHHHHHcCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHH
Q 044791 359 GDEGLQLFEQMRKLGLQP--------------NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVL 424 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~P--------------d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~ 424 (623)
+++|++.|+++......- +.......+..+...+..++|.+.|........-..+..++..+...+
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 999999999988642110 011111223344455778889999988875423334566778888999
Q ss_pred HhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhc
Q 044791 425 GKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGK 503 (623)
Q Consensus 425 ~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~ 503 (623)
...|++++|+.+|++++...| +..+|..+...|...|++++|.+.++...++.+.. ...+..+-..+
T Consensus 183 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------~~a~~~lg~~~ 250 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY------------IRSRYNLGISC 250 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHH
T ss_pred HHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc------------HHHHHHHHHHH
Confidence 999999999999999666556 56789999999999999999999999999987654 34677788888
Q ss_pred CccccccCCcccchHHHHHHHHHHHH
Q 044791 504 SRLVEFRNPTLYRDDEKLKALNQMKE 529 (623)
Q Consensus 504 ~~~~~~~~~~~~~~~eal~~~~~M~~ 529 (623)
.+.|++ ++|++.|++-.+
T Consensus 251 ~~~g~~--------~~A~~~~~~al~ 268 (323)
T d1fcha_ 251 INLGAH--------REAVEHFLEALN 268 (323)
T ss_dssp HHHTCH--------HHHHHHHHHHHH
T ss_pred HHCCCH--------HHHHHHHHHHHH
Confidence 899988 699999965544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=2.6e-09 Score=107.88 Aligned_cols=196 Identities=9% Similarity=0.074 Sum_probs=118.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhhc---CChHHHHHHHHHHH
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG-SMTDARRVFDHMAD---RSMDSWHLMINGYA 354 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g-~~~~A~~lf~~m~~---~~~~tyn~Li~~~~ 354 (623)
.|+.+..++.+.+..++|+++++++++.. +-+..+|+....++...| ++++|+..+++..+ .+..+|+.+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 45555556666666667777776666643 224556666666666654 36667666666543 23446666666666
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCC----
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGH---- 429 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~---- 429 (623)
+.|++++|+..|+++.+.... +..+|..+...+.+.|++++|++.|+.+++ +.| +...|+.+..++.+.+.
T Consensus 124 ~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred hhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HCCccHHHHHHHHHHHHHccccchh
Confidence 677777777777776664221 456666666666666777777777766663 233 34455555544444443
Q ss_pred --HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 430 --LFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 430 --~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
+++|++.+.+++...| +...|+.+...+. ....+++.++++.+.++.+..
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~ 252 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSH 252 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTC
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCc
Confidence 5677777777565556 4566666655443 334566667777777766654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=1.7e-08 Score=101.83 Aligned_cols=218 Identities=12% Similarity=0.086 Sum_probs=163.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHcC--CCCC-HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 249 SVADLARLCQEGKVKEAIELMDKG--VKAD-ASCFYTLFELCGNPK-WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~~~--~~pd-~~ty~~Ll~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
++.+...+.+.+++++|++++++. +.|+ ..+|+....++...| ++++|++.++..++... -+..+|+.+..++.+
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHHHHh
Confidence 335556678899999999999874 4454 457888888888876 59999999999988643 378999999999999
Q ss_pred cCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------HH
Q 044791 325 CGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA------IE 395 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~------~e 395 (623)
.|++++|++.|+++.+ .+...|+.+...+.+.|++++|+..|+++++.... +...|+.+...+.+.+. ++
T Consensus 125 l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~~~ 203 (315)
T d2h6fa1 125 LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLE 203 (315)
T ss_dssp HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred hccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhhhH
Confidence 9999999999999876 35679999999999999999999999999987433 56778877776666554 68
Q ss_pred HHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHHc--CChhHHHHH
Q 044791 396 EAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP---TAEFWEALRNYARIH--GDIDLEDHA 469 (623)
Q Consensus 396 ~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P---d~~ty~~Li~a~~~~--g~~~~A~~~ 469 (623)
+|++.+...++ +.| +...|+.+...+... ..+++.++++..+++.| +...+..++..|... +..+.+...
T Consensus 204 ~ai~~~~~al~---~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~ 279 (315)
T d2h6fa1 204 REVQYTLEMIK---LVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 279 (315)
T ss_dssp HHHHHHHHHHH---HSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HhHHHHHHHHH---hCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 89988888874 345 566677666655544 45677777766333333 456677777776543 444444444
Q ss_pred HHH
Q 044791 470 EEL 472 (623)
Q Consensus 470 ~~~ 472 (623)
++.
T Consensus 280 ~~k 282 (315)
T d2h6fa1 280 LNK 282 (315)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.94 E-value=4.5e-08 Score=97.91 Aligned_cols=187 Identities=11% Similarity=0.116 Sum_probs=150.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---Ch-HHHHHHHHHHHHcCChHHHHHHHH
Q 044791 292 WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SM-DSWHLMINGYADNGLGDEGLQLFE 367 (623)
Q Consensus 292 ~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~-~tyn~Li~~~~~~g~~eeA~~l~~ 367 (623)
..++|..+|++.++...+-+...|..++..+.+.|++++|..+|+++.+. +. ..|...+..+.+.|++++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 46789999999988655567788999999999999999999999998753 32 379999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC---C
Q 044791 368 QMRKLGLQPNEQTFLAVFS-ACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP---F 443 (623)
Q Consensus 368 eM~~~g~~Pd~~ty~~li~-a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~---~ 443 (623)
++++.+.. +...|..... -+...|+.+.|..+|+.+... ..-+...|...++.+.+.|++++|..+|++++. .
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 99876543 3333333332 345568999999999999964 233567888999999999999999999999544 2
Q ss_pred CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC
Q 044791 444 EP--TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKA 481 (623)
Q Consensus 444 ~P--d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~ 481 (623)
.| ....|...+..-..+|+.+.+.++.+++.++.+...
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 33 246899999988899999999999999998877654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=5.3e-08 Score=96.56 Aligned_cols=259 Identities=10% Similarity=-0.051 Sum_probs=186.9
Q ss_pred HHHHHcCCHHHHHHHHHcC--CCCC------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHH
Q 044791 254 ARLCQEGKVKEAIELMDKG--VKAD------ASCFYTLFELCGNPKWYENAKKVHDYFLQSTI-RGD----LVLNNKVIE 320 (623)
Q Consensus 254 ~~~~~~g~~~~A~~l~~~~--~~pd------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~y~~Li~ 320 (623)
..+...|++++|++++++. ..|+ ..++..+..++...|++++|++.|++.++... .++ ..++..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 3467899999999999752 2333 24678888999999999999999998876321 112 356677888
Q ss_pred HHHHcCCHHHHHHHHHHhhcC-----------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC----CCCHHHHHHHH
Q 044791 321 MYGKCGSMTDARRVFDHMADR-----------SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGL----QPNEQTFLAVF 385 (623)
Q Consensus 321 ~y~k~g~~~~A~~lf~~m~~~-----------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~----~Pd~~ty~~li 385 (623)
.+...|++.+|...+.+.... ....+..+...+...|++++|...+.+...... .....++..+.
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 899999999999999876431 112667778889999999999999999886432 22355667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCC-----ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-----CHHHHHHHHH
Q 044791 386 SACGSADAIEEAFIHFESMKSEFGISPG-----TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-----TAEFWEALRN 455 (623)
Q Consensus 386 ~a~~~~g~~e~A~~l~~~m~~~~g~~p~-----~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-----d~~ty~~Li~ 455 (623)
..+...++.+.+...+.+.......... ...+..+...+...|+.++|...+++.+...+ ....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 7888899999999988876653222221 23455566778889999999999999555333 2356777888
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCc-hhhHHHHhhhcCccccccCCcccchHHHHHHHHHH
Q 044791 456 YARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPK-KRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQM 527 (623)
Q Consensus 456 a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~-~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M 527 (623)
++...|+.++|...++....+...... .|+ ...+..+-..+.+.|++ ++|++.|++-
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~--------~~A~~~l~~A 317 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRL-------MSDLNRNLLLLNQLYWQAGRK--------SDAQRVLLDA 317 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHHTCH--------HHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhccc-------ChHHHHHHHHHHHHHHHCCCH--------HHHHHHHHHH
Confidence 999999999999988887654332111 122 23445556667888887 6899988554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=1.7e-08 Score=100.23 Aligned_cols=266 Identities=13% Similarity=0.006 Sum_probs=182.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----C----hHHHH
Q 044791 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGD----LVLNNKVIEMYGKCGSMTDARRVFDHMADR-----S----MDSWH 347 (623)
Q Consensus 281 ~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-----~----~~tyn 347 (623)
.....++...|++++|++++++.++..-..+ ..++..+..+|...|++++|+..|++..+. + ..++.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3345567889999999999999988532211 357788899999999999999999987641 2 22677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC---Cccch
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKL----GLQ--PN-EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP---GTEHY 417 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~----g~~--Pd-~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p---~~~ty 417 (623)
.+...+...|++++|...+.+.... +.. +. ...+..+...+...|+++.|...+........... ....+
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 7888899999999999999887642 111 11 23566677788999999999999988875422111 22344
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhhCC----CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCC
Q 044791 418 LGLVGVLGKCGHLFEAQQFIEQKLP----FEPT----AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTP 489 (623)
Q Consensus 418 ~~Li~~~~k~g~~e~A~~lf~~~m~----~~Pd----~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~ 489 (623)
..+...+...|...++...+.++.. .... ...+..+...+...|+.+.|...++...++.+....
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------- 248 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH------- 248 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG-------
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch-------
Confidence 4556667788999988888876221 1111 245666677888999999888888877665544322
Q ss_pred CCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHH----HCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhc
Q 044791 490 PPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMK----ESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGL 565 (623)
Q Consensus 490 ~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~----~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~l 565 (623)
.....+..+-..+...|++ ++|+.++++.. ..+..|+....... .+.++...|+.++|.+.
T Consensus 249 -~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~~~~~~~~~~~~~~~~~------la~~~~~~g~~~~A~~~ 313 (366)
T d1hz4a_ 249 -FLQGQWRNIARAQILLGEF--------EPAEIVLEELNENARSLRLMSDLNRNLLL------LNQLYWQAGRKSDAQRV 313 (366)
T ss_dssp -GGHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHHTCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHHHhhcccChHHHHHHHH------HHHHHHHCCCHHHHHHH
Confidence 2334445566677778877 69999986654 34555554332222 23566777888888776
Q ss_pred ccC
Q 044791 566 IST 568 (623)
Q Consensus 566 l~~ 568 (623)
+.+
T Consensus 314 l~~ 316 (366)
T d1hz4a_ 314 LLD 316 (366)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=1.1e-08 Score=98.73 Aligned_cols=197 Identities=11% Similarity=-0.045 Sum_probs=125.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYA 354 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~ 354 (623)
.+|..+..+|.+.|++++|++.|++.++.. +-+..+|+.+..+|.+.|++++|++.|+++.+. +..+|..+..+|.
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH
Confidence 467777888888888888888888888753 236788888888888888888888888887653 3457888888888
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCC----H
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGH----L 430 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~----~ 430 (623)
..|++++|+..|++.++... .+......+..++.+.+..+.+..+...... .......+ .++..+..... .
T Consensus 117 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGW-NIVEFYLGNISEQTLM 191 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHH-HHHHHHTTSSCHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhh-hHHHHHHHHHHHHHHH
Confidence 88888888888888887532 2444444444455555665555555555442 22222222 22333322222 2
Q ss_pred HHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 431 FEAQQFIEQKLPFEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 431 e~A~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
+.+...+.......|+ ..+|..|...|...|++++|...++......|..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 2222222111112222 2466677788888899998888888887766554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=7.4e-08 Score=92.68 Aligned_cols=194 Identities=9% Similarity=-0.113 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcC--CCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKG--VKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG 323 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~--~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~ 323 (623)
..+..+..+|.+.|++++|++.|++. +.| +..+|+.+..++.+.|++++|++.|+++++... -+..++..+..+|.
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHHHH
Confidence 35567788999999999999999873 344 467899999999999999999999999999642 25778999999999
Q ss_pred HcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----HHH
Q 044791 324 KCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA----IEE 396 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~----~e~ 396 (623)
..|++++|+..|++..+. +...+..+..++.+.+..+.+..+........-. ...++ ++..+..... .+.
T Consensus 117 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~ 193 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE--QWGWN-IVEFYLGNISEQTLMER 193 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC--STHHH-HHHHHTTSSCHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh--hhhhh-HHHHHHHHHHHHHHHHH
Confidence 999999999999988653 3344445555666777766676666666654322 22222 2222222212 222
Q ss_pred HHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 397 AFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 397 A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
+...+.... ...+ ...+|..|...|...|++++|++.|++++...|+.
T Consensus 194 ~~~~~~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 194 LKADATDNT---SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242 (259)
T ss_dssp HHHHCCSHH---HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHhh---hcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 222222111 1112 23467778899999999999999999988877864
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.74 E-value=2.4e-07 Score=91.55 Aligned_cols=184 Identities=12% Similarity=0.050 Sum_probs=110.8
Q ss_pred HHHHHHcCCHHHHHHHHHcC--------CCCC-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CC-CCCHHHHHHH
Q 044791 253 LARLCQEGKVKEAIELMDKG--------VKAD-ASCFYTLFELCGNPKWYENAKKVHDYFLQS----TI-RGDLVLNNKV 318 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~--------~~pd-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~-~pd~~~y~~L 318 (623)
...|...|++++|++.|.+. -.++ ..+|..+..+|.+.|++++|++.+++.++. |. .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 45577778888888777531 1122 246777777888888888888887776543 11 0113455566
Q ss_pred HHHHHH-cCCHHHHHHHHHHhhcC-----C----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-----CH-HHHH
Q 044791 319 IEMYGK-CGSMTDARRVFDHMADR-----S----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-----NE-QTFL 382 (623)
Q Consensus 319 i~~y~k-~g~~~~A~~lf~~m~~~-----~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-----d~-~ty~ 382 (623)
...|-. .|++++|++.|++..+- + ..+|..+...|...|++++|+.+|++.......- .. ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 666644 57888888887766431 1 1257777777888888888888888776543221 11 1233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC---c---cchhhHHHHHHh--cCCHHHHHHHHHh
Q 044791 383 AVFSACGSADAIEEAFIHFESMKSEFGISPG---T---EHYLGLVGVLGK--CGHLFEAQQFIEQ 439 (623)
Q Consensus 383 ~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~---~---~ty~~Li~~~~k--~g~~e~A~~lf~~ 439 (623)
.++..+...|+++.|...+++..+ +.|. . .....|+.++-. .+.+++|+..|++
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~---~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH---hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344455667888888887777663 3332 1 123445555544 3457777777777
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.69 E-value=5.3e-07 Score=89.81 Aligned_cols=217 Identities=8% Similarity=0.007 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--------------HcCCHHHHHHHHHHhhc----CChHHHHHHHHHHHH
Q 044791 294 ENAKKVHDYFLQSTIRGDLVLNNKVIEMYG--------------KCGSMTDARRVFDHMAD----RSMDSWHLMINGYAD 355 (623)
Q Consensus 294 ~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~--------------k~g~~~~A~~lf~~m~~----~~~~tyn~Li~~~~~ 355 (623)
+.+..+|++++.. +.-+...|-..+..+- ..+..++|..+|++..+ .+...|...+..+.+
T Consensus 33 ~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 3455566666654 2234455544443322 23456889999998764 345578888999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHH-HHhcCCHHHHH
Q 044791 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGV-LGKCGHLFEAQ 434 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~-~~k~g~~e~A~ 434 (623)
.|++++|..+|+++++.........|...+..+.+.|++++|.++|+.+.+. ...+...|...... +...|+.+.|.
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHH
Confidence 9999999999999987644434567899999999999999999999998843 22233444443333 33468999999
Q ss_pred HHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCc
Q 044791 435 QFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPT 513 (623)
Q Consensus 435 ~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~ 513 (623)
.+|++++...| +...|...+..+...|+++.|..+++......+.... -....|..++.--...|+.
T Consensus 190 ~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~--------~~~~iw~~~~~fE~~~G~~---- 257 (308)
T d2onda1 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE--------KSGEIWARFLAFESNIGDL---- 257 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG--------GCHHHHHHHHHHHHHHSCH----
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH--------HHHHHHHHHHHHHHHcCCH----
Confidence 99999666444 5678999999999999999999999998886543321 1134566777666666765
Q ss_pred ccchHHHHHHHHHHHH
Q 044791 514 LYRDDEKLKALNQMKE 529 (623)
Q Consensus 514 ~~~~~eal~~~~~M~~ 529 (623)
+.+.+++++|.+
T Consensus 258 ----~~~~~~~~r~~~ 269 (308)
T d2onda1 258 ----ASILKVEKRRFT 269 (308)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHH
Confidence 577777766643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.62 E-value=9.1e-08 Score=96.38 Aligned_cols=216 Identities=9% Similarity=-0.050 Sum_probs=163.6
Q ss_pred HHHcCCHHHHHHHHHcC--CCC-CHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHH
Q 044791 256 LCQEGKVKEAIELMDKG--VKA-DASCFYTLFELCGNPK--WYENAKKVHDYFLQSTIRGDLVLNN-KVIEMYGKCGSMT 329 (623)
Q Consensus 256 ~~~~g~~~~A~~l~~~~--~~p-d~~ty~~Ll~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~~y~-~Li~~y~k~g~~~ 329 (623)
+...|.+++|+.++++- ..| +...|..+..++...+ ++++|+..+.++++.. ..+...+. .+..++...+..+
T Consensus 83 ~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 83 EESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccH
Confidence 44556688999998762 334 4566777777766655 5899999999998863 33566554 4557777889999
Q ss_pred HHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 330 DARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 330 ~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
+|+..++.+.+. +..+|+.+...+.+.|++++|...+.+..+. .|+ ...++..+...+..+++...+.....
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 999999988764 5568999999999999999987776655543 111 12233445566777788888887764
Q ss_pred hcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 407 EFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 407 ~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
.-..+...+..++..+...|+.++|++.|.+.+...|+ ..+|..+..+|...|+.++|.+.++.+.+++|.
T Consensus 237 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~ 308 (334)
T d1dcea1 237 --GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 308 (334)
T ss_dssp --SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred --hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc
Confidence 33345677888899999999999999999997776664 467888888999999999999999999998753
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=7.9e-07 Score=87.75 Aligned_cols=202 Identities=10% Similarity=-0.013 Sum_probs=138.6
Q ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 044791 260 GKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQS----TIRG-DLVLNNKVIEMYGKCGSMTDARRV 334 (623)
Q Consensus 260 g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~~y~~Li~~y~k~g~~~~A~~l 334 (623)
+++++|.++| .....+|...|++++|.+.|.++.+. +-.+ -..+|..+..+|.+.|++++|++.
T Consensus 31 ~~~~~Aa~~y-----------~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~ 99 (290)
T d1qqea_ 31 YKFEEAADLC-----------VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99 (290)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHH-----------HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 3467777654 44577889999999999999988763 2111 247899999999999999999999
Q ss_pred HHHhhc----C-C----hHHHHHHHHHHHH-cCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 044791 335 FDHMAD----R-S----MDSWHLMINGYAD-NGLGDEGLQLFEQMRKL----GLQP-NEQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 335 f~~m~~----~-~----~~tyn~Li~~~~~-~g~~eeA~~l~~eM~~~----g~~P-d~~ty~~li~a~~~~g~~e~A~~ 399 (623)
|++..+ . + ..++..+...|.. .|++++|+.+|++..+. +-.+ -..+|..+...+...|++++|+.
T Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~ 179 (290)
T d1qqea_ 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD 179 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHH
Confidence 997653 1 1 2367777777755 69999999999988642 2111 13567888999999999999999
Q ss_pred HHHHHHhhcCCCCCc-----cchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC------HHHHHHHHHHHHHcCChhHHHH
Q 044791 400 HFESMKSEFGISPGT-----EHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT------AEFWEALRNYARIHGDIDLEDH 468 (623)
Q Consensus 400 l~~~m~~~~g~~p~~-----~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd------~~ty~~Li~a~~~~g~~~~A~~ 468 (623)
+|+++.......+.. ..|..++..+...|+.+.|...|++...+.|. ......|+.++. .++.+...+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~-~~d~e~~~e 258 (290)
T d1qqea_ 180 IYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN-EGDSEQLSE 258 (290)
T ss_dssp HHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH-TTCTTTHHH
T ss_pred HHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHH-hcCHHHHHH
Confidence 999988542111111 11234455667789999999999996665553 234455666654 455443334
Q ss_pred HHHHH
Q 044791 469 AEELM 473 (623)
Q Consensus 469 ~~~~~ 473 (623)
++..+
T Consensus 259 ai~~y 263 (290)
T d1qqea_ 259 HCKEF 263 (290)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=8.4e-07 Score=82.27 Aligned_cols=127 Identities=9% Similarity=-0.029 Sum_probs=93.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044791 319 IEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAF 398 (623)
Q Consensus 319 i~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~ 398 (623)
...+...|++++|++.|+++..++..+|..+..+|...|++++|++.|++.++... -+...|..+..+|.+.|++++|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccHHHHH
Confidence 55667778888888888888777777888888888888888888888888887542 25677788888888888888888
Q ss_pred HHHHHHHhhc-----------CCCCC---ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 044791 399 IHFESMKSEF-----------GISPG---TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 399 ~l~~~m~~~~-----------g~~p~---~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd 446 (623)
+.|+...... |+.-. ..++..+..+|.+.|++++|.+.|++++...|+
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 8888766321 11110 123445677788999999999999986666664
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=2.4e-06 Score=79.12 Aligned_cols=122 Identities=8% Similarity=-0.043 Sum_probs=101.8
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044791 253 LARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR 332 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~ 332 (623)
...+...|++++|++.|++-..++..+|..+..++.+.|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4557889999999999998777888899999999999999999999999999865 336889999999999999999999
Q ss_pred HHHHHhhcC-------------------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 044791 333 RVFDHMADR-------------------SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ 375 (623)
Q Consensus 333 ~lf~~m~~~-------------------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~ 375 (623)
+.|++.... ...++..+..++.+.|++++|++.|.+..+....
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999886431 1135667778889999999999998887765443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.34 E-value=1.5e-07 Score=94.68 Aligned_cols=253 Identities=9% Similarity=-0.055 Sum_probs=170.7
Q ss_pred cCCHHHHHHHHHcC--CCCCHH-HHHHH---HHHHhC-------CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044791 259 EGKVKEAIELMDKG--VKADAS-CFYTL---FELCGN-------PKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 259 ~g~~~~A~~l~~~~--~~pd~~-ty~~L---l~~~~~-------~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~ 325 (623)
.+..++|++++++. ..|+.. .|+.. +..+.. .|.+++|+.+++..++.. +-+...|..+..++...
T Consensus 42 ~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHh
Confidence 33458999999863 456643 34432 233333 345788999999988864 33678888888887776
Q ss_pred C--CHHHHHHHHHHhhcC---ChHHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044791 326 G--SMTDARRVFDHMADR---SMDSWHL-MINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 326 g--~~~~A~~lf~~m~~~---~~~tyn~-Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~ 399 (623)
+ ++++|+..++++.+. +...|.. +...+...|.+++|+..++++.+.... +..+|+.+..++.+.|++++|..
T Consensus 121 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHH
Confidence 5 489999999988653 4445544 446677789999999999998876433 67888899999999999888766
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 044791 400 HFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 400 l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~ 478 (623)
.+...... .|. ...++..+...+..++|...+.+.+...| +...+..+...+...|+.++|...+....+..+
T Consensus 200 ~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 273 (334)
T d1dcea1 200 QGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENK 273 (334)
T ss_dssp CCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 55544321 111 12234455666777788888877443344 345566677777788888877776666655433
Q ss_pred CCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeee
Q 044791 479 SKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLH 541 (623)
Q Consensus 479 ~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~ 541 (623)
. +...+..+-..+.+.|++ ++|+++|+...+ +.|+..-|..
T Consensus 274 ~------------~~~~~~~l~~~~~~~~~~--------~eA~~~~~~ai~--ldP~~~~y~~ 314 (334)
T d1dcea1 274 W------------CLLTIILLMRALDPLLYE--------KETLQYFSTLKA--VDPMRAAYLD 314 (334)
T ss_dssp H------------HHHHHHHHHHHHCTGGGH--------HHHHHHHHHHHH--HCGGGHHHHH
T ss_pred h------------HHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHH--HCcccHHHHH
Confidence 2 244666777778888988 799999977655 3566544433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=1.6e-05 Score=70.56 Aligned_cols=51 Identities=16% Similarity=-0.018 Sum_probs=19.4
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044791 286 LCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDH 337 (623)
Q Consensus 286 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~ 337 (623)
.|.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|+..|++
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~k 69 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATR 69 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHH
Confidence 3333444444444444333332 11333333333334444444444444433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.14 E-value=1.4e-05 Score=73.01 Aligned_cols=93 Identities=6% Similarity=-0.059 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFS 386 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~ 386 (623)
++..+....+.|.+.|++++|+..|++..+ .+...|+.+..+|.+.|++++|+..|++.++. .| +..+|..+..
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~lg~ 80 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHHHH
Confidence 344444445555555555555555554432 23335555555555555555555555555432 33 2445555555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 044791 387 ACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 387 a~~~~g~~e~A~~l~~~m~ 405 (623)
+|...|++++|+..|+...
T Consensus 81 ~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=1.4e-05 Score=67.29 Aligned_cols=94 Identities=18% Similarity=0.088 Sum_probs=53.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCC
Q 044791 350 INGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGH 429 (623)
Q Consensus 350 i~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~ 429 (623)
...+.+.|++++|+.+|++.++.. .-+...|..+..+|.+.|++++|+..++...+. . .-+...|..+..+|...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-K-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHh-c-cchhhHHHHHHHHHHHccC
Confidence 445566666666666666665542 124455666666666666666666666666532 1 1144555666666666666
Q ss_pred HHHHHHHHHhhCCCCCC
Q 044791 430 LFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 430 ~e~A~~lf~~~m~~~Pd 446 (623)
+++|+..|++++...|+
T Consensus 87 ~~~A~~~~~~a~~~~p~ 103 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEAN 103 (117)
T ss_dssp HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 66666666665555554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.10 E-value=1.8e-05 Score=72.26 Aligned_cols=96 Identities=10% Similarity=-0.072 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHH
Q 044791 275 ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMIN 351 (623)
Q Consensus 275 pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~ 351 (623)
|+...+-.....+.+.|++++|+..|.+.++.. +-+...|..+..+|.+.|++++|+..|++..+. ++.+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 667778888999999999999999999998864 347889999999999999999999999998763 4558999999
Q ss_pred HHHHcCChHHHHHHHHHHHH
Q 044791 352 GYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 352 ~~~~~g~~eeA~~l~~eM~~ 371 (623)
+|.+.|++++|+..|++..+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=3.4e-05 Score=68.34 Aligned_cols=118 Identities=10% Similarity=0.014 Sum_probs=82.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 044791 317 KVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA 393 (623)
Q Consensus 317 ~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~ 393 (623)
...+.|.+.|++++|+..|++..+ .+...|..+..+|...|++++|+..|+++++.. .-+..+|..+..+|...|+
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 346677788888888888887765 345578888888888888888888888888763 2255788888888888888
Q ss_pred HHHHHHHHHHHHhhcCCCCC-ccchhhHHHH--HHhcCCHHHHHHHHH
Q 044791 394 IEEAFIHFESMKSEFGISPG-TEHYLGLVGV--LGKCGHLFEAQQFIE 438 (623)
Q Consensus 394 ~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~--~~k~g~~e~A~~lf~ 438 (623)
+++|...|++.... .|+ ...+..+..+ +...+.+++|....+
T Consensus 94 ~~eA~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 138 (159)
T d1a17a_ 94 FRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 138 (159)
T ss_dssp HHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 88888888888743 343 3333333333 334455666665533
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=4.9e-05 Score=63.81 Aligned_cols=87 Identities=13% Similarity=-0.039 Sum_probs=44.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChH
Q 044791 284 FELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGD 360 (623)
Q Consensus 284 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~e 360 (623)
...+.+.|++++|+.+|++.++.. +-+...|..+..+|.+.|++++|+..|+...+ .+...|..+..++...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 444455555555555555555542 22445555555555555555555555554433 23335555555555555555
Q ss_pred HHHHHHHHHHH
Q 044791 361 EGLQLFEQMRK 371 (623)
Q Consensus 361 eA~~l~~eM~~ 371 (623)
+|+..|++..+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 55555555554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=8.3e-05 Score=63.06 Aligned_cols=97 Identities=5% Similarity=-0.054 Sum_probs=74.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCCh-----HHHHHHHHH
Q 044791 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS---MTDARRVFDHMADRSM-----DSWHLMING 352 (623)
Q Consensus 281 ~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~---~~~A~~lf~~m~~~~~-----~tyn~Li~~ 352 (623)
..|++.+...+++++|++.|++.++.+ +.+..++..+..++.+.++ +++|+++|+++...+. .+|..|..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 467778888888999999999888865 3477888888888887554 4568888888876432 267778888
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQPNEQT 380 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~Pd~~t 380 (623)
|.+.|++++|++.|+++++. .|+..-
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~~ 107 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNNQ 107 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCCHH
Confidence 88999999999999998884 565443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.78 E-value=6.3e-05 Score=62.62 Aligned_cols=81 Identities=6% Similarity=-0.113 Sum_probs=31.7
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHH
Q 044791 287 CGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGL 363 (623)
Q Consensus 287 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~ 363 (623)
+.+.|++++|+..|++.++... -+..+|..|..+|.+.|++++|+..|++..+ .+..+|..|..+|...|++++|+
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~ 104 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAAL 104 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHH
Confidence 3334444444444444443221 1234444444444444444444444443332 12223444444444444444444
Q ss_pred HHHHH
Q 044791 364 QLFEQ 368 (623)
Q Consensus 364 ~l~~e 368 (623)
+.|++
T Consensus 105 ~~l~~ 109 (112)
T d1hxia_ 105 ASLRA 109 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=0.00015 Score=61.72 Aligned_cols=93 Identities=11% Similarity=0.073 Sum_probs=72.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCh----------HHHHH
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSM----------DSWHL 348 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~----------~tyn~ 348 (623)
.+-.+...+.+.|++++|++.|.+.++.. +-+..+|..+..+|.+.|++++|+..|+++.+.+. .+|..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 35567788888899999999998888864 33688888889999999999999999888765211 26777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
+...+...+++++|+..|++....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc
Confidence 777888888888888888887654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=3.7e-05 Score=65.38 Aligned_cols=100 Identities=12% Similarity=0.045 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcCCCCC-ccchhhHHH
Q 044791 347 HLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA---IEEAFIHFESMKSEFGISPG-TEHYLGLVG 422 (623)
Q Consensus 347 n~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~---~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~ 422 (623)
..|++.+...+++++|.+.|++.++.+. .+..++..+..++.+.++ +++|+.+|+++... ...++ ..+|..|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHH
Confidence 3456666667777777777777666532 255666666666665443 34566666666532 21121 234556666
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCHH
Q 044791 423 VLGKCGHLFEAQQFIEQKLPFEPTAE 448 (623)
Q Consensus 423 ~~~k~g~~e~A~~lf~~~m~~~Pd~~ 448 (623)
+|.+.|++++|++.|++++.+.|+-.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~ 106 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNN 106 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCH
Confidence 67777777777777777656666543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=0.00014 Score=61.91 Aligned_cols=99 Identities=12% Similarity=-0.012 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-----ccchhhHH
Q 044791 347 HLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-----TEHYLGLV 421 (623)
Q Consensus 347 n~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-----~~ty~~Li 421 (623)
-.+...|.+.|++++|+..|.+.++.+. -+..+|..+..+|.+.|++++|+..++.++.-..-.+. ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 3445555566666666666666555422 14455555566666666666666666555531000011 12344455
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCCCC
Q 044791 422 GVLGKCGHLFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 422 ~~~~k~g~~e~A~~lf~~~m~~~Pd 446 (623)
..+...+++++|+++|++++...++
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 5555566666666666654433333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.67 E-value=0.00019 Score=59.54 Aligned_cols=84 Identities=12% Similarity=0.137 Sum_probs=41.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044791 319 IEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIE 395 (623)
Q Consensus 319 i~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e 395 (623)
...+.+.|++++|+..|++..+. +..+|..+..++.+.|++++|+..|++.++... -+..++..+..+|...|+++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHCCCHH
Confidence 34444555555555555554431 233555555555555555555555555554321 13444445555555555555
Q ss_pred HHHHHHHH
Q 044791 396 EAFIHFES 403 (623)
Q Consensus 396 ~A~~l~~~ 403 (623)
+|++.+++
T Consensus 102 ~A~~~l~~ 109 (112)
T d1hxia_ 102 AALASLRA 109 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.63 E-value=0.00019 Score=63.16 Aligned_cols=66 Identities=15% Similarity=0.105 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 379 QTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 379 ~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
.+|+.+..+|.+.|++++|++.++..++ +.| +..+|..+..+|...|++++|+..|++++.+.|+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~---~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 134 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLK---IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 134 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccc---ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3566667777777777777777777663 234 45677777777777777777777777766666643
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=0.00017 Score=64.67 Aligned_cols=114 Identities=11% Similarity=0.025 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVL 424 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~ 424 (623)
.+......+.+.|++++|+..|.+.++.--.-. +..+........+. ..+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~--------------~~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYES--------------SFSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC--------------CCCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--------------ccchHHHhhhchhH--------HHHHHHHHHHH
Confidence 566677788888888888888888775311000 00000001111111 12456677777
Q ss_pred HhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 425 GKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 425 ~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
.+.|++++|+..+++++.+.| ++.+|..+..+|...|+++.|...++...+++|.+
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n 129 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 129 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 788888888888877666666 56677777778888888888888888887777653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.59 E-value=0.017 Score=54.11 Aligned_cols=219 Identities=11% Similarity=0.001 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCC-CCHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKGVK-ADASCFYTLFELCGN----PKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMY 322 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~~~-pd~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y 322 (623)
.+..|...+-+.|++++|++.|++... =|..++..|...|.. ..+...|...+....+.+ +......|...+
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~~~ 80 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 80 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccccc
Confidence 445667777889999999999975322 255666667777665 568999999999988866 445566666666
Q ss_pred HH----cCCHHHHHHHHHHhhcCChH-HHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Q 044791 323 GK----CGSMTDARRVFDHMADRSMD-SWHLMINGYAD----NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS--- 390 (623)
Q Consensus 323 ~k----~g~~~~A~~lf~~m~~~~~~-tyn~Li~~~~~----~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~--- 390 (623)
.. ..+.+.|...|+...+.+.. ....|...+.. ......|...+.+.... .+...+..|...+..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~ 157 (265)
T d1ouva_ 81 YSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRG 157 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSS
T ss_pred ccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCC
Confidence 54 46788999999887665443 44444444443 34567777777777664 356677777777765
Q ss_pred -cCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHh----cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cC
Q 044791 391 -ADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGK----CGHLFEAQQFIEQKLPFEPTAEFWEALRNYARI----HG 461 (623)
Q Consensus 391 -~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k----~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~----~g 461 (623)
..+...+...++...+. | +......|...|.. ..+.++|+.+|+++.+. -+...+..|...|.. ..
T Consensus 158 ~~~~~~~~~~~~~~a~~~-g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~-g~~~a~~~LG~~y~~G~g~~~ 232 (265)
T d1ouva_ 158 TPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-ENGGGCFNLGAMQYNGEGVTR 232 (265)
T ss_dssp SCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTSSSSC
T ss_pred cccccccchhhhhccccc-c---ccccccchhhhcccCcccccchhhhhhhHhhhhcc-cCHHHHHHHHHHHHcCCCCcc
Confidence 46677888888776643 3 44555556556654 56899999999994442 356666666666653 23
Q ss_pred ChhHHHHHHHHHHhcC
Q 044791 462 DIDLEDHAEELMVDLD 477 (623)
Q Consensus 462 ~~~~A~~~~~~~~~m~ 477 (623)
+.+.|.+.++...+.+
T Consensus 233 n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 233 NEKQAIENFKKGCKLG 248 (265)
T ss_dssp CSTTHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCc
Confidence 6776777777665543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=0.00089 Score=59.70 Aligned_cols=59 Identities=7% Similarity=-0.100 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
+|+.+..+|.+.|++++|+..++...+ .++.+|..+..+|...|++++|+..|++.++.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 455566666666666666666665543 24446666666666666666666666666654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.52 E-value=0.017 Score=54.19 Aligned_cols=190 Identities=12% Similarity=0.005 Sum_probs=134.2
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCC-hHHHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK----CGSMTDARRVFDHMADRS-MDSWHLMI 350 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k----~g~~~~A~~lf~~m~~~~-~~tyn~Li 350 (623)
|+..+..|...+.+.+++++|+++|++..+.| |...+..|..+|.. ..+...|...+......+ ......|.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccc
Confidence 45677788888889999999999999998876 67778788888887 568999999998877654 44555555
Q ss_pred HHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhhcCCCCCccchhhHHH
Q 044791 351 NGYAD----NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG----SADAIEEAFIHFESMKSEFGISPGTEHYLGLVG 422 (623)
Q Consensus 351 ~~~~~----~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~----~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~ 422 (623)
..+.. ..+.+.|+..|+...+.|.. .....+...+. .......|...+...... .+...+..|..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~L~~ 150 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----NDGDGCTILGS 150 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc----cccchhhhhhh
Confidence 55544 46789999999998887643 22233333333 345677777777766532 34556777777
Q ss_pred HHHh----cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhc
Q 044791 423 VLGK----CGHLFEAQQFIEQKLPFEPTAEFWEALRNYARI----HGDIDLEDHAEELMVDL 476 (623)
Q Consensus 423 ~~~k----~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~----~g~~~~A~~~~~~~~~m 476 (623)
.|.. ..+...+..+++.+.+ ..+...+..|-..|.. ..+.+.|...++...+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~-~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~ 211 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACD-LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 211 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred hhccCCCcccccccchhhhhcccc-ccccccccchhhhcccCcccccchhhhhhhHhhhhcc
Confidence 7775 4567788888877333 3466666666666655 45788888888887775
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.49 E-value=0.00043 Score=61.61 Aligned_cols=60 Identities=3% Similarity=-0.067 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
.|..+..+|.+.|++++|+..|++.++... -+..+|..+..++...|++++|++.|+...
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al 138 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQ 138 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHH
Confidence 344444444445555555554444444321 133444444444444444444444444444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.46 E-value=0.0007 Score=61.20 Aligned_cols=124 Identities=13% Similarity=0.099 Sum_probs=83.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHH
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDE 361 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~ee 361 (623)
.........|++++|.+.|.+.++. .+... +......+-+...-..+....+..+..++.++.+.|++++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~--------l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALRE--WRGPV--------LDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CCSST--------TGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh--Ccccc--------cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence 4445777888999999988888774 11110 0000111111122223333345578888899999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hcCCCCCccc
Q 044791 362 GLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS----EFGISPGTEH 416 (623)
Q Consensus 362 A~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~----~~g~~p~~~t 416 (623)
|+..++++++... -+...|..++.+|...|+.++|++.|+++.+ +.|+.|...+
T Consensus 86 Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 86 VIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999999987632 3778899999999999999999999888754 3477777543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.46 E-value=0.0007 Score=59.27 Aligned_cols=106 Identities=13% Similarity=-0.045 Sum_probs=69.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTI----RGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYA 354 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~----~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~ 354 (623)
.+......+.+.|++.+|+..|.++++.-. ..+.... .......+.+|+.+..+|.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL--------------------DKKKNIEISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH--------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH--------------------HhhhhHHHHHHhhHHHHHH
Confidence 455566677777778888777777765310 0111100 0111112346777788888
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
+.|++++|+..+++.++.. .-+..+|..+..++...|++++|+..|+...
T Consensus 79 ~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al 128 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAA 128 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888888888887753 2266788888888888888888888888777
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.42 E-value=0.00053 Score=62.01 Aligned_cols=118 Identities=10% Similarity=0.237 Sum_probs=82.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCC--CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVK--ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSM 328 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~--pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~ 328 (623)
.........|++++|.+.|.+.+. +... +..+.. +.+ +...-..+... ....+..++.++.+.|++
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~-----l~~~~~-~~w--~~~~r~~l~~~----~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPV-----LDDLRD-FQF--VEPFATALVED----KVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSST-----TGGGTT-STT--HHHHHHHHHHH----HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccc-----cccCcc-hHH--HHHHHHHHHHH----HHHHHHHHHHHHHHCCCc
Confidence 445677899999999999976322 2211 000011 111 11111122111 245778899999999999
Q ss_pred HHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHH-----HcCCCCCHHH
Q 044791 329 TDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMR-----KLGLQPNEQT 380 (623)
Q Consensus 329 ~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~-----~~g~~Pd~~t 380 (623)
++|+..++.+.+. +...|..+|.+|.+.|+.++|++.|+++. +.|+.|+..|
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999999998763 55699999999999999999999999974 4699998765
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.37 E-value=0.037 Score=54.51 Aligned_cols=220 Identities=14% Similarity=0.104 Sum_probs=133.3
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc-------------
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK------------- 271 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~------------- 271 (623)
..|.|+.|..+|..+.. +..++..+.+.++++.|++++++
T Consensus 26 ~~~lye~A~~lY~~~~d---------------------------~~rl~~~~v~l~~~~~avd~~~k~~~~~~~k~~~~~ 78 (336)
T d1b89a_ 26 DEKMYDAAKLLYNNVSN---------------------------FGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA 78 (336)
T ss_dssp ---CTTTHHHHHHHTTC---------------------------HHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCC---------------------------HHHHHHHHHhhccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 47888999899987622 22455666667777776666531
Q ss_pred ---------------CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 272 ---------------GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFD 336 (623)
Q Consensus 272 ---------------~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~ 336 (623)
....+......++..|-..|.+++...+++..... -..+...++-|+.+|++.+. ++-++.+.
T Consensus 79 l~~~~e~~la~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~l~ 156 (336)
T d1b89a_ 79 CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREHLE 156 (336)
T ss_dssp HHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHHHH
Confidence 23345555667788888888888888888776543 24567788888888888653 34344333
Q ss_pred Hhhc-CChH----------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 337 HMAD-RSMD----------SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 337 ~m~~-~~~~----------tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
.... -++. .|.-++..|.+.|++++|..+.- +. .+++.-....+..+.+..+.+...++.....
T Consensus 157 ~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i---~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL 231 (336)
T d1b89a_ 157 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---NH--PTDAWKEGQFKDIITKVANVELYYRAIQFYL 231 (336)
T ss_dssp HHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH---HS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred hccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH---Hc--chhhhhHHHHHHHHHccCChHHHHHHHHHHH
Confidence 3211 1111 34555555666666665554332 21 2233334455666777777777777766655
Q ss_pred hhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC-------------CCCCHHHHHHHHHHHHHcCChh
Q 044791 406 SEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-------------FEPTAEFWEALRNYARIHGDID 464 (623)
Q Consensus 406 ~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-------------~~Pd~~ty~~Li~a~~~~g~~~ 464 (623)
.. .| ...+.|+......-+..++.+++++ -+ -.-+....++|...|...+|++
T Consensus 232 ~~---~p--~~i~~lL~~v~~~~d~~r~V~~~~k-~~~l~li~p~Le~v~~~n~~~vn~al~~lyie~~d~~ 297 (336)
T d1b89a_ 232 EF---KP--LLLNDLLMVLSPRLDHTRAVNYFSK-VKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQ 297 (336)
T ss_dssp HH---CG--GGHHHHHHHHGGGCCHHHHHHHHHH-TTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHH
T ss_pred Hc---CH--HHHHHHHHHhccCCCHHHHHHHHHh-cCCcHHHHHHHHHHHHcChHHHHHHHHHHHhCcchhH
Confidence 32 23 3346677777777777777777776 21 1224467788888888888875
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.32 E-value=0.001 Score=58.94 Aligned_cols=75 Identities=9% Similarity=0.022 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFS 386 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~ 386 (623)
+...|..+..+|.+.|++++|+..|++..+. +..+|..+..+|.+.|++++|+..|++.++. .| +...+..+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3567888899999999999999999988764 4558999999999999999999999999985 44 3444444433
Q ss_pred H
Q 044791 387 A 387 (623)
Q Consensus 387 a 387 (623)
+
T Consensus 154 ~ 154 (169)
T d1ihga1 154 V 154 (169)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.31 E-value=0.0012 Score=58.50 Aligned_cols=60 Identities=15% Similarity=0.051 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
.|+.+..+|.+.|++++|+..+++.++.. .-+..+|..+..++...|++++|+..|+.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al 125 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVL 125 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444555555555555555554432 1234444444555555555555555555444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.29 E-value=0.0011 Score=58.88 Aligned_cols=111 Identities=11% Similarity=0.039 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhH
Q 044791 344 DSWHLMINGYADNGLGDEGLQLFEQMRKL---GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGL 420 (623)
Q Consensus 344 ~tyn~Li~~~~~~g~~eeA~~l~~eM~~~---g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~L 420 (623)
..+.-....+.+.|++++|+..|.+.+.. ....+ .+. ......+. ..+|+.+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~----------------~~~-~~~~~~~~--------~~~~~Nl 70 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLS----------------EKE-SKASESFL--------LAAFLNL 70 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC----------------HHH-HHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccc----------------hhh-hhhcchhH--------HHHHHhH
Confidence 35667777888888888888888776532 01110 000 01111111 1235556
Q ss_pred HHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 421 VGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 421 i~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
..+|.+.|++++|+..+++++.+.| +..+|..+..+|...|++++|...++.+.+++|.
T Consensus 71 a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~ 130 (168)
T d1kt1a1 71 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 130 (168)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 6667777777777777777555444 4566667777777777777777777777776654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.24 E-value=0.028 Score=55.45 Aligned_cols=209 Identities=15% Similarity=0.033 Sum_probs=128.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTD 330 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~ 330 (623)
.+...|-+.|.++.|..+|... .-|..++..+.+.+++..|.++..+. -+..+|..+..++.+.....-
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~-----~d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~l 87 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 87 (336)
T ss_dssp ----------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhC-----CCHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHH
Confidence 3455566899999999999742 23777888888999999998887643 256788889999888877765
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 044791 331 ARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGI 410 (623)
Q Consensus 331 A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~ 410 (623)
|.-+ ......+......++..|-..|.+++.+.+|+..... -..+...++-++..|++.+. ++.++.+...-..+.+
T Consensus 88 a~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~~y~~ 164 (336)
T d1b89a_ 88 AQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREHLELFWSRVNI 164 (336)
T ss_dssp HHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHSTTSCH
T ss_pred HHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHHHHhccccCCH
Confidence 4322 1112234445567899999999999999999987633 24577788889999988653 4444444332111000
Q ss_pred C------CCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 411 S------PGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 411 ~------p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
. -....|.-++-.|.+.|.+++|..+.-. ..+++.-....+..+.+.++.+...++...+.+-
T Consensus 165 ~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~---~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~ 233 (336)
T d1b89a_ 165 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 233 (336)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH---cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc
Confidence 0 0112233444444555555554444433 1233434455677788999999888888877663
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.00019 Score=75.95 Aligned_cols=108 Identities=6% Similarity=-0.045 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccchhhHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEHYLGLVGV 423 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~ 423 (623)
.|..+...+.+.|+.++|...+.+..... ...++..+.+.+...|++++|+..|++.. .+.|+ ...|+.|...
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~---~l~P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAA---QLVPSNGQPYNQLAIL 195 (497)
T ss_dssp ---------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTBSHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHH---HHCCCchHHHHHHHHH
Confidence 44444445555555555555444433221 01344445555555555555555555544 22332 3455555555
Q ss_pred HHhcCCHHHHHHHHHhhCCC-CCCHHHHHHHHHHHH
Q 044791 424 LGKCGHLFEAQQFIEQKLPF-EPTAEFWEALRNYAR 458 (623)
Q Consensus 424 ~~k~g~~e~A~~lf~~~m~~-~Pd~~ty~~Li~a~~ 458 (623)
|...|+..+|+..|.+++.+ .|-..++..|...|.
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 55555555555555554332 223344444444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.15 E-value=0.0011 Score=58.15 Aligned_cols=85 Identities=12% Similarity=0.019 Sum_probs=41.2
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCC-CCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---------C---
Q 044791 286 LCGNPKWYENAKKVHDYFLQSTI-RGD----------LVLNNKVIEMYGKCGSMTDARRVFDHMADR---------S--- 342 (623)
Q Consensus 286 ~~~~~g~~~~A~~l~~~m~~~g~-~pd----------~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---------~--- 342 (623)
.+.+.|++++|++.|++.++..- .|+ ..+|+.+..+|.+.|++++|+..+++..+. +
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 44455666666666666554210 011 244555555555555555555555544320 0
Q ss_pred --hHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044791 343 --MDSWHLMINGYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 343 --~~tyn~Li~~~~~~g~~eeA~~l~~eM~ 370 (623)
...|+.+..+|...|++++|+..|++.+
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0134444555555555555555555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.97 E-value=0.0017 Score=56.77 Aligned_cols=95 Identities=13% Similarity=0.081 Sum_probs=56.6
Q ss_pred HHHHH--HHHHHHcCChHHHHHHHHHHHHcCCC-C----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---
Q 044791 345 SWHLM--INGYADNGLGDEGLQLFEQMRKLGLQ-P----------NEQTFLAVFSACGSADAIEEAFIHFESMKSEF--- 408 (623)
Q Consensus 345 tyn~L--i~~~~~~g~~eeA~~l~~eM~~~g~~-P----------d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~--- 408 (623)
+|..+ ...+...|++++|+..|++.++..-. | ...+|+.+..+|...|++++|...+++..+-.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 55555 34456677888888888777753111 1 13567777777777788877777777665321
Q ss_pred -CCCCC-----ccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 409 -GISPG-----TEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 409 -g~~p~-----~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
...++ ...|+.+..+|...|++++|++.|++
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~ 125 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 125 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 11111 11344556666666666666666666
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.96 E-value=0.00058 Score=65.84 Aligned_cols=120 Identities=11% Similarity=-0.018 Sum_probs=72.9
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCChHHHH
Q 044791 287 CGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRS---MDSWHLMINGYADNGLGDEGL 363 (623)
Q Consensus 287 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~---~~tyn~Li~~~~~~g~~eeA~ 363 (623)
..+.|++++|++.+++.++.. +-|...+..|...|+..|++++|++.|+...+.+ ...+..+...+...+..+++.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 456788888888888888864 3477888888888888888888888888876543 234444444443333333322
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 364 QLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 364 ~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
.-+......+-.++...+......+...|+.++|.++++++.+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 21111001111112234444455566778888888887777643
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.74 E-value=0.0029 Score=54.72 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
+++|.+.|++..+. .|+..+|...+..+ .+|.+++.+..
T Consensus 102 ~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~ 140 (145)
T d1zu2a1 102 FDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAY 140 (145)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHH
T ss_pred HHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHH
Confidence 45666666666653 45555544444333 34445554444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.67 E-value=0.00074 Score=71.17 Aligned_cols=113 Identities=9% Similarity=-0.037 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD-SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN-EQTFLAVFSAC 388 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~-tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd-~~ty~~li~a~ 388 (623)
+...+..+...+.+.|+.++|...++.....+.. ++..|...+...|++++|+..|++..+. .|+ ..+|+.|...+
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILA 196 (497)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 5677888889999999999999888776554433 7888999999999999999999999886 454 58999999999
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhc
Q 044791 389 GSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKC 427 (623)
Q Consensus 389 ~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~ 427 (623)
...|+..+|...|.+... -..|-..++..|...|.+.
T Consensus 197 ~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHh
Confidence 999999999999998873 2234567788887777654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.57 E-value=0.0014 Score=62.97 Aligned_cols=125 Identities=12% Similarity=-0.030 Sum_probs=82.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccchhhHHHHHHhcCCHH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~~k~g~~e 431 (623)
..+.|++++|+..|++.++... -|...+..+...|+..|++++|...|+...+ +.|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccH
Confidence 3456888888888888887632 2667888888888888888888888888874 3453 333434444444444444
Q ss_pred HHHHHHHh-hCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC
Q 044791 432 EAQQFIEQ-KLPFEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKA 481 (623)
Q Consensus 432 ~A~~lf~~-~m~~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~ 481 (623)
++..-+.. .+...|+ ...+......+...|+.++|.+.++.+.++.+...
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 133 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 43332222 1112333 24444555677889999999999999999887754
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.47 E-value=0.00096 Score=57.90 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 044791 430 LFEAQQFIEQKLPFEPTAEFWEALRNYA 457 (623)
Q Consensus 430 ~e~A~~lf~~~m~~~Pd~~ty~~Li~a~ 457 (623)
+++|.+.|++++.+.|+...|...+..+
T Consensus 102 ~~~A~~~~~kal~l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 102 FDLATQFFQQAVDEQPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence 5777788887777777766655544433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.44 E-value=0.043 Score=43.04 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
+|+.|..+|.+.|++++|+..|+++++
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 344444444444444444444444444
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.34 E-value=0.039 Score=43.30 Aligned_cols=65 Identities=11% Similarity=0.010 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQST-----IRGD-LVLNNKVIEMYGKCGSMTDARRVFDHMAD 340 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g-----~~pd-~~~y~~Li~~y~k~g~~~~A~~lf~~m~~ 340 (623)
+...+-.|...+.+.|++++|+..|++.++.. ..++ ..+++.|..+|.+.|++++|++.|+++.+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 34445566777777777777777777765531 1112 46677777777777777777777777665
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.02 E-value=0.43 Score=39.35 Aligned_cols=106 Identities=8% Similarity=-0.048 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-ChHHHHHHHHHHHH----cCChHHHHHHH
Q 044791 292 WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR-SMDSWHLMINGYAD----NGLGDEGLQLF 366 (623)
Q Consensus 292 ~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-~~~tyn~Li~~~~~----~g~~eeA~~l~ 366 (623)
|+++|+++|++..+.|.. ..+..|.. ....+.++|++.|++..+. +..++..|...|.. ..+.++|+++|
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~~--~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~ 82 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLVS--NSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 82 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHHT--CTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhcc--ccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHH
Confidence 455566666655555421 22222221 2234555555555554433 22334444444433 23455566666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 044791 367 EQMRKLGLQPNEQTFLAVFSACGS----ADAIEEAFIHFESMK 405 (623)
Q Consensus 367 ~eM~~~g~~Pd~~ty~~li~a~~~----~g~~e~A~~l~~~m~ 405 (623)
++..+.| +......|...|.. ..+.++|.++|+...
T Consensus 83 ~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa 122 (133)
T d1klxa_ 83 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 122 (133)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred hhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHH
Confidence 6555544 22333333333332 234555555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.59 E-value=0.26 Score=40.79 Aligned_cols=110 Identities=11% Similarity=0.048 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHcCCCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 044791 260 GKVKEAIELMDKGVKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK----CGSMTDARRV 334 (623)
Q Consensus 260 g~~~~A~~l~~~~~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k----~g~~~~A~~l 334 (623)
.++++|+++|++...- +...+..|. .....+.++|++++++..+.| +...+..|..+|.. ..+.++|+++
T Consensus 7 kd~~~A~~~~~kaa~~g~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~ 81 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQY 81 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCChhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHH
Confidence 3578888888653221 222333333 244568999999999998877 56777778777775 4678999999
Q ss_pred HHHhhcC-ChHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCC
Q 044791 335 FDHMADR-SMDSWHLMINGYAD----NGLGDEGLQLFEQMRKLGL 374 (623)
Q Consensus 335 f~~m~~~-~~~tyn~Li~~~~~----~g~~eeA~~l~~eM~~~g~ 374 (623)
|++..+. +..+...|...|.. ..+.++|+.+|++..+.|.
T Consensus 82 ~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 82 YSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 9988765 45567777777766 4578999999999888764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.51 E-value=1.6 Score=35.73 Aligned_cols=66 Identities=11% Similarity=0.024 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 044791 344 DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGIS 411 (623)
Q Consensus 344 ~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~ 411 (623)
.-.+..++.+...|+-|.-.+++.++.+. -+++......+..||.+.|...++-+++.+..++ |++
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~K 152 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 152 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hHH
Confidence 34556677778888888888888886653 4667777777888888888888888888877765 543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.39 E-value=3.5 Score=33.41 Aligned_cols=67 Identities=6% Similarity=-0.032 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHhhcCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 044791 310 GDLVLNNKVIEMYGKCG---SMTDARRVFDHMADRSM----DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE 378 (623)
Q Consensus 310 pd~~~y~~Li~~y~k~g---~~~~A~~lf~~m~~~~~----~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~ 378 (623)
+.+.+--...-++++.. ++++|+.+|+++.+.+. ..+..|.-+|.+.|++++|.+.++.+++. .|+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n 106 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 106 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCc
Confidence 45555555666666553 45677777777664332 25566677777888888888888877774 4543
|