Citrus Sinensis ID: 044798

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230-
MEEDEDRLLLSSLGVTSANPEDIERDVLAAAENVAGNSNETEESNEEKPHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTVSVDDDFDFDSALDAASAGFVETKRDELVRKGILTPFHKLKGFERCIQQPGPSNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRPFQRLKTPFRMPQSEESEVEKKKRSKRKKKRPLPDKKWRKRIAREDTRLEENEDSRDSLDMSSYEEEKQEDDEDSDNNEPPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVNVVGDQKDKEDKQKHKKAASANADDAVGDKENNLEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGSTVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFEVASSSANVARFADTRTSRSSKNASDVQPEILIRQICTFMQQRGGSSNSACIVEHFKDRVPSKDLPLFKNLLKEIATLQKDPSGSRWVLKLNFVF
cccHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccccccccccHHHccccccccccccHHHHHHHHcccccccHHHHHHHHcccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHcccccEEEEccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHccccccccEEEEcHHHHHHcHHHcccccEEEEEEcccccccccccHHHHHHHHcccccEEEEEcccccccHHHHHHHHHcccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccEEEEEEcccHHHHHHHHHHHHcHHHHHHHccccccccHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHccccccEEEEEcccccccccccccccEEEEEccccccHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHccHHHHcccccccccccHHcHHHHHcccccccccccccHHHHHccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHccccccccHHHHHHHHHHHHHccccccccEEEEcccccc
cccHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHEEEHHHHHHHHHHHHHccccccccccccccccccccccccccHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEccccccccccccccccccccHHHHHHHcccEcccccccccccccccccccHHHcccccHHHcccccHHHHHHHHHHHHHHHHHccccccccccHHHHHcccccccHHHccccccccccccccccHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHHHHHHHHHccccccEEEEEcHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHccccccccccccccccccccccccHHHEEEEEEcccEEEEEEEEEEEEcHHHHcccccEEEEEEcccccccccHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHHccccccccHHHHHHHHccHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHccccccEEEEEEEEcccccEEcccccEEEEEccccccccHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHccccccccEccHHHHHHHHccccccccccccccHHHcccccccEEcccccccccccHHcHHccccccccccccccccccHHHHHcccccccccccccccHHHHHHHHHHHcccccHccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccEEEEcccEcc
MEEDEDRLLLSslgvtsanpedIERDVLAAAENvagnsneteesneekphdksesidpsstsqEKLYNKLRAVEFEIGAVASTVDHLRRvstkedndiddgdsteqdgredeksavqaspndmtlQHALTADRLKSLKKTKAQLVKELShfpkgitskgieHDKFIQDLVKeehrpkrkskeaqkpgkdrskqqktvsvdddfdfdsALDAASAGFVETKRDELVrkgiltpfhklkgferciqqpgpsnkqnvpdeqearsndpfsaSVDRALRMMSEAaqarpstklldpeslpkldgptrpfqrlktpfrmpqseesEVEKKKRskrkkkrplpdkkwRKRIAredtrleenedsrdsldmssyeeekqeddedsdnneppfvtlegglkipesiFNNLFDYQKVGVQWLWELHCQRaggiigdemglgKTIQVLSFLGAlhfsnmykpsivvcpVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFrkkrakssdtdndgegshdsdyegnlssrnpkkwdLLINRVLRSESGLLITTYEQLRLLGEKLLdvewgyavldeghrirnpnaEISLVCKQLQTVHRIIMTGAPIQNKLSELWSlfdfvfpgklgvlpvfeaefavpitvggyanasplqvSTAYRCAVVLRDLIMPYLLRRMKADvnaqlpkktehVLFCSLTEEQRAVYRAFLASSEVEQILdgsrnslygIDVMRKicnhpdllereqscqipdygnpersEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGyeyrrmdgltpVKQRMALIDEYNNSSDVFIFILTTkvgglgtnltganrviifdpdwnpstdvQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLtnkilknpqqrrFFKARNMKDlftlnddgnggsteTSNIFSQLSEDvnvvgdqkdkedkQKHKKAAsanaddavgdkennleigssrrkgkekvdnigdEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRmlrsrddisvptwtgksgtagapssvrkkfgstvgsqlikplegsssnktgefnsfgagasagkvlSSSELLARIRGNQENAVGAGLERQFEVASssanvarfadtrtsrssknasdvqpEILIRQICTFMqqrggssnsacivehfkdrvpskdlpLFKNLLKEIATlqkdpsgsrwVLKLNFVF
meededrlllsslgvtsanpedIERDVLAAAENVagnsneteesneekphdksesidpsstsQEKLYNKLRAVEFEIGavastvdhlrrvstkedndiddgdsteqdgredeksavqaspndmtLQHALTADRLKSLKKTKAQLVKELShfpkgitskgiehDKFIQDLvkeehrpkrkskeaqkpgkdrskqqktvsvdddfdFDSALDAAsagfvetkrdelvRKGILTpfhklkgferciqqpgpsnkqnvpdeqearsndPFSASVDRALRMMSEAaqarpstklldpeslpkldgptrpfqrlktpfrmpqseesevekkkrskrkkkrplpdkkwrkriaredtrleenedsrdsldmssyeeekqeddedsdnnePPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRakssdtdndgegshdsdyegnlssrnpkkwDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEghrirnpnAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLasseveqildGSRNSLYGIDVMRKICNHPDLLEREQSCQipdygnpersEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANrviifdpdwnpSTDVQARErawrigqkqdvtvyrlitrgtieekvyHRQIYKHfltnkilknpqQRRFFKARNMKDLftlnddgnggsTETSNIFSQLSEDVNVVGDqkdkedkqkhkkaasanaddavgdkennleigssrrkgkekvdnigdevDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEAlrqsrmlrsrddisvptwtgksgtagapssvrkkFGSTVGSqlikplegsssnkTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFEVASSSANVArfadtrtsrssknasdvqpEILIRQICTFMQQRGGSSNSACIVEHFKDRVPSKDLPLFKNLLKEIAtlqkdpsgsrwVLKLNFVF
MEEDEDRlllsslGVTSANPEDIERDVLAAAENVAGnsneteesneeKPHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTVSVdddfdfdsaldaasaGFVETKRDELVRKGILTPFHKLKGFERCIQQPGPSNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRPFQRLKTPFRMPQSEESEVEkkkrskrkkkrplpdkkwrkrIAREDTRLEENEDSRDSLDMSSYeeekqeddedsdnnePPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVNVVGdqkdkedkqkhkkAASANADDAVGDKENNLEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGSTVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFEVASSSANVARFADTRTSRSSKNASDVQPEILIRQICTFMQQRGGSSNSACIVEHFKDRVPSKDLPLFKNLLKEIATLQKDPSGSRWVLKLNFVF
******************************************************************YNKLRAVEFEIGAVASTVDH**************************************************************************************************************************LDAASAGFVETKRDELVRKGILTPFHKLKGFERCI*********************************************************************************************************************************************FVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHD***************************************KWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLER***C*************MKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTL*********************************************************************************ILKSLFDAN*****************************************************************************************************************************************************************EILIRQICTFMQQRGGSSNSACIVEHFKDRVPSKDLPLFKNLLKEIATLQKDPSGSRWVLKLNFV*
*****DR*LLSSLGVTSANPE**************************************************************************************************************************************************************************************************************GILTP**************************************************************************************************KKKRPLPDKKWRKRIAR****************************************LEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQ**************DNDGEGSHDSD**************LLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLA***************YGIDVMRKICNHPDLLEREQSC*I***GNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKI******************FTLND**************QLSE********************************ENNLEIGSSRRKGKEKVDNIG*******NILKSLFDANGIHSAM************************************************************************************************************************************************************ILIRQICTFMQQRGGSSNSACIVEHFKDRVPSKDLPLFKNLLKEIATLQKDPSGSRWVLKLNFVF
********LLSSLGVTSANPEDIERDVLAAAENVA****************************EKLYNKLRAVEFEIGAVASTVDHLRRVST**************************SPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQDLVK**************************SVDDDFDFDSALDAASAGFVETKRDELVRKGILTPFHKLKGFERCIQQP******************PFSASVDRALRMMS**********LLDPESLPKLDGPTRPFQRLKTPF***************************KWRKRIARED********************************EPPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGF************************NLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVNVV**********************AVGDKENNLEIGS********VDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMR*******************RMLRSRDDISVPTWT********************GSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFEVASSSANVAR****************QPEILIRQICTFMQQRGGSSNSACIVEHFKDRVPSKDLPLFKNLLKEIATLQKDPSGSRWVLKLNFVF
****EDRLLLSSLGVTSANPEDIERDVLAAAEN*****************************QEKLYNKLRAVEFEIGAVASTVDHLRRV********************************MTLQHALTADRLKSLKKTKAQLVKELSHF*******G**HDKFIQDLVKEE********************QKTVSVD*D*********AS*GFVETKRDELVRKGILTPFHKLK************************************LRMMSEA*********************************************KRSKRKKKRPLPDKKWRKRIAREDTRLEENE***********************NNEPPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTD********************KKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLND*************S***E*V*******************************************************EETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTWTGKS*************************************************************************************************ASDVQPEILIRQICTFMQQRGGSSNSACIVEHFKDRVPSKDLPLFKNLLKEIATLQKDPSGSRWVLKLNFVF
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MEEDEDRLLLSSLGVTSANPEDIERDVLAAAENVAGNSNETEESNEEKPHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTVSVDDDFDFDSALDAASAGFVETKRDELVRKGILTPFHKLKGFERCIQQPGPSNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRPFQRLKTPFRMPQSEESEVEKKKRSKRKKKRPLPDKKWRKRIAREDTRLEENEDSRDSLDMSSYEEEKQEDDEDSDNNEPPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVNVVGDQKDKEDKQKHKKAASANADDAVGDKENNLEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIxxxxxxxxxxxxxxxxxxxxxxxxxxxxSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGSTVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFEVASSSANVARFADTRTSRSSKNASDVQPEILIRQICTFMQQRGGSSNSACIVEHFKDRVPSKDLPLFKNLLKEIATLQKDPSGSRWVLKLNFVF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1231 2.2.26 [Sep-21-2011]
P403521085 DNA repair and recombinat yes no 0.619 0.702 0.457 0.0
Q9UR24973 DNA repair protein rhp26 yes no 0.530 0.671 0.508 0.0
Q03468 1493 DNA excision repair prote yes no 0.429 0.354 0.518 0.0
A2BGR3 1451 DNA excision repair prote no no 0.400 0.339 0.335 2e-95
Q2NKX8 1250 DNA excision repair prote no no 0.410 0.404 0.318 2e-91
A6QQR4 1242 DNA excision repair prote no no 0.426 0.422 0.320 1e-90
Q9JIM3699 Putative DNA repair and r no no 0.419 0.738 0.322 6e-88
Q5T890712 Putative DNA repair and r no no 0.400 0.692 0.324 1e-85
Q8BHK9 1240 DNA excision repair prote no no 0.396 0.393 0.311 1e-85
Q08773 1120 ISWI chromatin-remodeling no no 0.371 0.408 0.349 8e-81
>sp|P40352|RAD26_YEAST DNA repair and recombination protein RAD26 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD26 PE=1 SV=1 Back     alignment and function desciption
 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/830 (45%), Positives = 527/830 (63%), Gaps = 68/830 (8%)

Query: 384  PFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA 443
            P   L    KIP  I++ LF+YQK  VQWL+EL+ Q  GGIIGDEMGLGKTIQV++F+ A
Sbjct: 279  PDAKLNSQFKIPGEIYSLLFNYQKTCVQWLYELYQQNCGGIIGDEMGLGKTIQVIAFIAA 338

Query: 444  LHFSNMYK-PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKK-RAKSSDTD 501
            LH S +   P ++VCP T+++QW  E + W+P     +LH     +   +K +   +D +
Sbjct: 339  LHHSGLLTGPVLIVCPATVMKQWCNEFQHWWPPLRTVILHSMGSGMASDQKFKMDENDLE 398

Query: 502  NDGEGSHDSD--YEGNLSSRNPKK-------WDLLINRVLRSESGLLITTYEQLRLLGEK 552
            N    S  SD  YE   +S   KK        D LI++V+ ++  +LITTY  LR+  +K
Sbjct: 399  NLIMNSKPSDFSYEDWKNSTRTKKALESSYHLDKLIDKVV-TDGHILITTYVGLRIHSDK 457

Query: 553  LLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFP 612
            LL V+W YAVLDEGH+IRNP++EISL CK+L+T +RII++G PIQN L+ELWSLFDF+FP
Sbjct: 458  LLKVKWQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWSLFDFIFP 517

Query: 613  GKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQL 672
            GKLG LPVF+ +F +PI +GGYANA+ +QV T Y+CAV LRDLI PYLLRR+KADV   L
Sbjct: 518  GKLGTLPVFQQQFVIPINIGGYANATNIQVQTGYKCAVALRDLISPYLLRRVKADVAKDL 577

Query: 673  PKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQ 732
            P+K E VLFC LT+ QR+ Y  FL SS++ QI +G RN L+GID++RKICNHPDLL+R+ 
Sbjct: 578  PQKKEMVLFCKLTKYQRSKYLEFLHSSDLNQIQNGKRNVLFGIDILRKICNHPDLLDRDT 637

Query: 733  SCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIA-----SGY 787
                PDYG+P+RS KM+VV Q+L +W  QG++ LLF Q++QMLDILE F+       S  
Sbjct: 638  KRHNPDYGDPKRSGKMQVVKQLLLLWHKQGYKALLFTQSRQMLDILEEFISTKDPDLSHL 697

Query: 788  EYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPST 847
             Y RMDG T +K R +L+D +NN S   +F+LTT+VGGLG NLTGANR+IIFDPDWNPST
Sbjct: 698  NYLRMDGTTNIKGRQSLVDRFNNES-FDVFLLTTRVGGLGVNLTGANRIIIFDPDWNPST 756

Query: 848  DVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARN 907
            D+QARERAWRIGQK++V++YRL+  G+IEEK+YHRQI+K FLTN+IL +P+Q+RFFK   
Sbjct: 757  DMQARERAWRIGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRILTDPKQKRFFKIHE 816

Query: 908  MKDLFTLNDDGNGGSTETSNIFSQLSEDVNVVGDQKDKEDKQKHKKAASANADDAVGDKE 967
            + DLF+L  + NG STE      +L+E+V     QK  E+ +  K   S + +  V    
Sbjct: 817  LHDLFSLGGE-NGYSTE------ELNEEV-----QKHTENLKNSKSEESDDFEQLV---- 860

Query: 968  NNLEIGS---SRRKGKEKVDNIGDEVDEETNILKSLFDA-NGIHSAMNHDAIMNAH--DE 1021
             NL   S   S   GKEK +N   E D    +++ L    + + + M+HD+++N+H    
Sbjct: 861  -NLSGVSKLESFYNGKEKKENSKTEDDR---LIEGLLGGESNLETVMSHDSVVNSHAGSS 916

Query: 1022 EKMRLEEQASQVAQRAAEALRQSR-MLRSRDDISVPTWTGKSGTAGAPSSVRKK------ 1074
                + ++AS+VA  A  ALR+SR  +  + +I  PTWTG+ G AG    +RK+      
Sbjct: 917  SSNIITKEASRVAIEAVNALRKSRKKITKQYEIGTPTWTGRFGKAG---KIRKRDPLKNK 973

Query: 1075 ---FGSTVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAG 1131
                 + +G+      E S   +   ++     A + ++ S+++ L  IR        A 
Sbjct: 974  LTGSAAILGNITKSQKEASKEARQENYDDGITFARSKEINSNTKTLENIR--------AY 1025

Query: 1132 LERQFEVASSSANVARFADTRTSRSSKNASDVQPEILIRQICTFMQQRGG 1181
            L++Q    SSS ++        S S K    ++   L++ I  F ++R G
Sbjct: 1026 LQKQNNFFSSSVSI--LNSIGVSLSDKEDV-IKVRALLKTIAQFDKERKG 1072
May be involved in the preferential repair of active genes.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2
>sp|Q9UR24|RHP26_SCHPO DNA repair protein rhp26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp26 PE=4 SV=1 Back     alignment and function description
>sp|Q03468|ERCC6_HUMAN DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1 Back     alignment and function description
>sp|A2BGR3|ERC6L_DANRE DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1 SV=1 Back     alignment and function description
>sp|Q2NKX8|ERC6L_HUMAN DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1 Back     alignment and function description
>sp|A6QQR4|ERC6L_BOVIN DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L PE=2 SV=1 Back     alignment and function description
>sp|Q9JIM3|RAD26_MOUSE Putative DNA repair and recombination protein RAD26-like OS=Mus musculus GN=Rad26l PE=2 SV=2 Back     alignment and function description
>sp|Q5T890|RAD26_HUMAN Putative DNA repair and recombination protein RAD26-like OS=Homo sapiens GN=RAD26L PE=1 SV=1 Back     alignment and function description
>sp|Q8BHK9|ERC6L_MOUSE DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l PE=1 SV=1 Back     alignment and function description
>sp|Q08773|ISW2_YEAST ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISW2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1231
2555779521230 DNA repair and recombination protein RAD 0.994 0.995 0.762 0.0
2254380891227 PREDICTED: DNA excision repair protein E 0.991 0.994 0.737 0.0
2240856641206 chromatin remodeling complex subunit [Po 0.975 0.995 0.730 0.0
1477659521249 hypothetical protein VITISV_002502 [Viti 0.991 0.976 0.723 0.0
3565458821210 PREDICTED: DNA repair and recombination 0.978 0.995 0.704 0.0
4494685641221 PREDICTED: DNA repair protein rhp26-like 0.979 0.987 0.685 0.0
2978367661181 predicted protein [Arabidopsis lyrata su 0.949 0.989 0.670 0.0
2977441671116 unnamed protein product [Vitis vinifera] 0.903 0.996 0.673 0.0
152242281187 DNA excision repair protein E [Arabidops 0.960 0.995 0.668 0.0
2420567851208 hypothetical protein SORBIDRAFT_03g00903 0.977 0.995 0.637 0.0
>gi|255577952|ref|XP_002529848.1| DNA repair and recombination protein RAD26, putative [Ricinus communis] gi|223530676|gb|EEF32549.1| DNA repair and recombination protein RAD26, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1871 bits (4846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 939/1232 (76%), Positives = 1053/1232 (85%), Gaps = 8/1232 (0%)

Query: 1    MEEDEDRLLLSSLGVTSANPEDIERDVLAAAENVAGNSNETEESNEEKPHDKSESIDPSS 60
            MEEDED+ LLS+LGVTS NPEDIERD+LA   N   N  E   S EE+P DKS S + +S
Sbjct: 1    MEEDEDKFLLSTLGVTSVNPEDIERDILAEVRNNTENDGEAGVSTEEEPPDKSISTNLAS 60

Query: 61   TSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTE-QDGREDEKSAVQAS 119
             S+ KLYNKLRAV+FEI AVASTV+ ++ V   ED+  DD    + +DG  D+KS    S
Sbjct: 61   ASEAKLYNKLRAVKFEIDAVASTVEQVKNVVNGEDHAYDDSVKLQPRDG--DDKSTDLVS 118

Query: 120  PNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRK 179
            PND TLQ AL ADRLKSLK+TKA + KE+S   K  T+KG+EH+K + ++VKEE R KRK
Sbjct: 119  PNDFTLQQALAADRLKSLKRTKADIEKEISGLHKDDTTKGMEHEKLLAEMVKEEPRCKRK 178

Query: 180  SKEAQKPGKDRSKQQKTVSVDDDFDFDSALDAASAGFVETKRDELVRKGILTPFHKLKGF 239
            SKE QKPGK++ K Q+TVS  DD DFD+ LDAASAGFVET+RDELVRKGILTPFH+LKGF
Sbjct: 179  SKEVQKPGKNKEKNQRTVSFSDDTDFDTMLDAASAGFVETERDELVRKGILTPFHQLKGF 238

Query: 240  ERCIQQPGPSNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKLD 299
            ERC+QQ GPS+  N   E+E RS+D  S S+ RA + M EAA+ARP TKLLD +++PKLD
Sbjct: 239  ERCLQQLGPSSGCNA-SEEEDRSHDLASDSIARAAQSMLEAAKARPVTKLLDSDAVPKLD 297

Query: 300  GPTRPFQRLKTPFRMPQSEESEVEKKKRSKRKKKRPLPDKKWRKRIAREDTRLEENEDSR 359
             PTRPFQRLKTP + P S E+  +K K SKRK KRPLP +KWRKRI RE+  LEE+E ++
Sbjct: 298  APTRPFQRLKTPLQFPHSLENASDKTKGSKRKTKRPLPGQKWRKRITREENHLEESECTK 357

Query: 360  DSLDMSSYEEEKQEDDEDSDNNEPPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQ 419
            ++   SS EEEK ED+ED D ++   + LEGGLKIPE+IF+ LF+YQKVGVQWLWELHCQ
Sbjct: 358  NNSVTSSTEEEKLEDEEDVDGDDTSLIELEGGLKIPEAIFSKLFEYQKVGVQWLWELHCQ 417

Query: 420  RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVE 479
            RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIV+CPVTLLRQWKREAEKWYP FHVE
Sbjct: 418  RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVICPVTLLRQWKREAEKWYPRFHVE 477

Query: 480  LLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLL 539
            LLHDSAQDL    KRAKS D+DN+ EGS DSDYEGN+SS+   KWD LINRVL+SE+GLL
Sbjct: 478  LLHDSAQDLP-HGKRAKSFDSDNESEGSLDSDYEGNISSKKANKWDSLINRVLKSEAGLL 536

Query: 540  ITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNK 599
            ITTYEQLRLLGEKLLD+EWGYAVLDEGHRIRNPNAE++L+CKQLQTVHRIIMTGAPIQNK
Sbjct: 537  ITTYEQLRLLGEKLLDIEWGYAVLDEGHRIRNPNAEVTLICKQLQTVHRIIMTGAPIQNK 596

Query: 600  LSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPY 659
            LSELWSLFDFVFPGKLGVLPVFEAEFAVPI+VGGYANASPLQVSTAYRCAVVLRDLIMPY
Sbjct: 597  LSELWSLFDFVFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPY 656

Query: 660  LLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMR 719
            LLRRMK DVNAQLPKKTEHVLFCSLT EQR+VYRAFLAS+EVEQI+DGSRNSLYGIDVMR
Sbjct: 657  LLRRMKVDVNAQLPKKTEHVLFCSLTAEQRSVYRAFLASTEVEQIIDGSRNSLYGIDVMR 716

Query: 720  KICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILE 779
            KICNHPDLLERE SCQ PDYGNP+RS KM+VVAQVLKVW++QGHRVLLFAQTQQMLDILE
Sbjct: 717  KICNHPDLLEREHSCQNPDYGNPDRSGKMRVVAQVLKVWREQGHRVLLFAQTQQMLDILE 776

Query: 780  SFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIF 839
             FL + GY YRRMDGLTP+KQRMALIDE+NNS+DVFIFILTTKVGGLGTNLTGANRVIIF
Sbjct: 777  IFLNSGGYSYRRMDGLTPIKQRMALIDEFNNSNDVFIFILTTKVGGLGTNLTGANRVIIF 836

Query: 840  DPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ 899
            DPDWNPSTD+QARERAWRIGQK+DVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ
Sbjct: 837  DPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ 896

Query: 900  RRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVNVVGDQKDKEDKQKHKKAASANA 959
            RRFFKAR+MKDLFTLNDDG  G TETSNIFSQLSE+VNVVG +K+KEDK+KH K ++++A
Sbjct: 897  RRFFKARDMKDLFTLNDDGGSGLTETSNIFSQLSEEVNVVGAKKEKEDKKKHYKGSASHA 956

Query: 960  DDAVGDKENNLEIGSSRR--KGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMN 1017
            DDA  DKEN+ EIG S R  KGKEK ++   EVDEETNIL+SL DA GIHSA+NHDAIMN
Sbjct: 957  DDAALDKENSPEIGPSHRKGKGKEKANHSDGEVDEETNILRSLIDAQGIHSAVNHDAIMN 1016

Query: 1018 AHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGS 1077
            AHDEEK RLEEQASQVAQRAAEALRQSRMLRS D +SVPTWTGKSGTAGAPSSVR+KFGS
Sbjct: 1017 AHDEEKTRLEEQASQVAQRAAEALRQSRMLRSHDSVSVPTWTGKSGTAGAPSSVRRKFGS 1076

Query: 1078 TVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFE 1137
            TV SQLI+  +  SSNKT   N  G GASAGK LSS+ELLARIRGNQE AVGAGLE+QF 
Sbjct: 1077 TVNSQLIRSSD-VSSNKTSSMNGMGVGASAGKALSSAELLARIRGNQERAVGAGLEQQFG 1135

Query: 1138 VASSSANVARFADTRTSRSSKNASDVQPEILIRQICTFMQQRGGSSNSACIVEHFKDRVP 1197
            +AS+SAN A   +   SR SKN S VQPEILIR+ICTF+QQRGG ++SA IV HFKDR+ 
Sbjct: 1136 LASTSANRAGSENNGVSRPSKNLSGVQPEILIRKICTFIQQRGGITDSATIVNHFKDRIL 1195

Query: 1198 SKDLPLFKNLLKEIATLQKDPSGSRWVLKLNF 1229
             KD+PLFKNLLKEIATL+KDP+G  WVLK  +
Sbjct: 1196 EKDMPLFKNLLKEIATLEKDPNGKVWVLKPEY 1227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225438089|ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224085664|ref|XP_002307656.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222857105|gb|EEE94652.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147765952|emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356545882|ref|XP_003541362.1| PREDICTED: DNA repair and recombination protein RAD26-like [Glycine max] Back     alignment and taxonomy information
>gi|449468564|ref|XP_004151991.1| PREDICTED: DNA repair protein rhp26-like [Cucumis sativus] gi|449522123|ref|XP_004168077.1| PREDICTED: DNA repair protein rhp26-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297836766|ref|XP_002886265.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332105|gb|EFH62524.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297744167|emb|CBI37137.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15224228|ref|NP_179466.1| DNA excision repair protein E [Arabidopsis thaliana] gi|4185142|gb|AAD08945.1| putative SNF2/RAD54 family DNA repair and recombination protein [Arabidopsis thaliana] gi|330251711|gb|AEC06805.1| DNA excision repair protein E [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242056785|ref|XP_002457538.1| hypothetical protein SORBIDRAFT_03g009030 [Sorghum bicolor] gi|241929513|gb|EES02658.1| hypothetical protein SORBIDRAFT_03g009030 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1231
TAIR|locus:20540111187 CHR8 "chromatin remodeling 8" 0.857 0.888 0.664 0.0
DICTYBASE|DDB_G02814411655 ercc6 "DNA excision repair pro 0.343 0.255 0.579 4.9e-196
ZFIN|ZDB-GENE-070228-11390 ercc6 "excision repair cross-c 0.412 0.365 0.498 2.1e-191
UNIPROTKB|E1BYA8 1498 ERCC6 "Uncharacterized protein 0.336 0.276 0.586 1.8e-190
UNIPROTKB|E2QSK6 1486 ERCC6L "Uncharacterized protei 0.336 0.278 0.583 4.9e-187
UNIPROTKB|D3ZZZ1 1475 Ercc6 "Protein Ercc6" [Rattus 0.327 0.273 0.577 1.5e-185
CGD|CAL00008821055 orf19.607 [Candida albicans (t 0.564 0.658 0.484 6.8e-184
UNIPROTKB|Q03468 1493 ERCC6 "DNA excision repair pro 0.335 0.276 0.581 9e-184
ASPGD|ASPL00000681261193 cshA [Emericella nidulans (tax 0.590 0.609 0.472 2.7e-180
POMBASE|SPCP25A2.02c973 rhp26 "SNF2 family helicase Rh 0.532 0.674 0.515 9e-180
TAIR|locus:2054011 CHR8 "chromatin remodeling 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3546 (1253.3 bits), Expect = 0., P = 0.
 Identities = 726/1092 (66%), Positives = 836/1092 (76%)

Query:    60 STSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQAS 119
             S+SQ +L NKLRAV+FEI AVASTV+++  ++             E+  ++D++S +Q  
Sbjct:    57 SSSQNELLNKLRAVKFEIDAVASTVENVDEIAA------------EKGLKKDDESDLQGL 104

Query:   120 PNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRK 179
              +   LQHAL  DRL+SLKK K QL KEL+       S   +H   ++DLVKE+   KRK
Sbjct:   105 HSGSALQHALATDRLRSLKKRKIQLEKELTGLHGQSASSSADHGNLLRDLVKEKPSLKRK 164

Query:   180 SKEAQKPGKDRSKQQKTVSVXXXXXXXXXXXXXXXGFVETKRDELVRKGILTPFHKLKGF 239
              KE +KP +   K+ K VS                GFVET+RDELVRKGILTPFHKL GF
Sbjct:   165 LKEIRKPSRRDGKKVKVVSFREDTDFDAVFDGASAGFVETERDELVRKGILTPFHKLDGF 224

Query:   240 ERCIQQPGPSNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKLD 299
             ER +QQPGPSN +N+P E +  + D  S+ +DRA++ MS AA+ARP+TKLLD E LPKL+
Sbjct:   225 ERRLQQPGPSNSRNLP-EGDDENED--SSIIDRAVQSMSLAAKARPTTKLLDAEDLPKLE 281

Query:   300 GPTRPFQRLKTPFRMPQSEESEVEXXXXXXXXXXXXXXXXXX-XXXIAREDTRLEENEDS 358
              PT PF+RL+  ++ P S ++E +                      I+RED+ L+ + D 
Sbjct:   282 PPTAPFRRLRKLYKTPNSPDNEAKKRKAGKKSKKTRPLPEKKWRKRISREDSSLQGSGDG 341

Query:   359 RDSLDMSSYXXXXXXXXXXXXXXXPPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHC 418
             R  L  SS                   V LEGGL IPE IF  LFDYQ+VGVQWLWELHC
Sbjct:   342 RRILTTSSCEEEELDDFDDADDNERSSVQLEGGLNIPECIFRKLFDYQRVGVQWLWELHC 401

Query:   419 QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHV 478
             QRAGGIIGDEMGLGKTIQVLSFLG+LHFS MYKPSI++CPVTLLRQW+REA+KWYP FHV
Sbjct:   402 QRAGGIIGDEMGLGKTIQVLSFLGSLHFSKMYKPSIIICPVTLLRQWRREAQKWYPDFHV 461

Query:   479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGL 538
             E+LHDSAQD G  K + K+S++D D E S DSD+E    S+N KKWD L+NRVL SESGL
Sbjct:   462 EILHDSAQDSGHGKGQGKASESDYDSESSVDSDHEPK--SKNTKKWDSLLNRVLNSESGL 519

Query:   539 LITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQN 598
             LITTYEQLRL GEKLL++EWGYAVLDEGHRIRNPN++I+LVCKQLQTVHRIIMTGAPIQN
Sbjct:   520 LITTYEQLRLQGEKLLNIEWGYAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQN 579

Query:   599 KLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMP 658
             KL+ELWSLFDFVFPGKLGVLPVFEAEF+VPITVGGYANASPLQVSTAYRCAVVLRDLIMP
Sbjct:   580 KLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVLRDLIMP 639

Query:   659 YLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVM 718
             YLLRRMKADVNA L KKTEHVLFCSLT EQR+ YRAFLASSEVEQI DG+RNSLYGIDVM
Sbjct:   640 YLLRRMKADVNAHLTKKTEHVLFCSLTVEQRSTYRAFLASSEVEQIFDGNRNSLYGIDVM 699

Query:   719 RKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDIL 778
             RKICNHPDLLERE S Q PDYGNPERS KMKVVA+VLKVWK QGHRVLLF+QTQQMLDIL
Sbjct:   700 RKICNHPDLLEREHSHQNPDYGNPERSGKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDIL 759

Query:   779 ESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVII 838
             ESFL+A+ Y YRRMDGLTPVKQRMALIDE+NNS D+F+F+LTTKVGGLGTNLTGANRVII
Sbjct:   760 ESFLVANEYSYRRMDGLTPVKQRMALIDEFNNSEDMFVFVLTTKVGGLGTNLTGANRVII 819

Query:   839 FDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ 898
             FDPDWNPS D+QARERAWRIGQK+DVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ
Sbjct:   820 FDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ 879

Query:   899 QRRFFKARNMKDLFTLNDDGNGG-STETSNIFSQLSEDVNVVGXXXXXXXXXXXXXAASA 957
             QRRFFKAR+MKDLF L DDG+   STETSNIFSQL+E++N+VG             A   
Sbjct:   880 QRRFFKARDMKDLFILKDDGDSNASTETSNIFSQLAEEINIVGVQSDKKPESDTQLALHK 939

Query:   958 NADDAVGDKENNLEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMN 1017
              A+            GSS +   E  D  G+ +DEETNILKSLFDA+GIHSA+NHDAIMN
Sbjct:   940 TAE------------GSSEQTDVEMTDKTGEAMDEETNILKSLFDAHGIHSAVNHDAIMN 987

Query:  1018 AHDEE-KMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFG 1076
             A+DEE KMRLE QASQVAQRAAEALRQSRMLRSR+ ISVPTWTG+SG AGAPSSVR++FG
Sbjct:   988 ANDEEEKMRLEHQASQVAQRAAEALRQSRMLRSRESISVPTWTGRSGCAGAPSSVRRRFG 1047

Query:  1077 STVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLER-Q 1135
             STV S+L +  +  S+ K G      AG S+GK  SS+ELL RIRG++E A+G GLE+ Q
Sbjct:  1048 STVNSRLTQTGDKPSAIKNG----ISAGLSSGKAPSSAELLNRIRGSREQAIGVGLEQPQ 1103

Query:  1136 FEVASSSANVAR 1147
                 SSS + +R
Sbjct:  1104 SSFPSSSGSSSR 1115
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0004386 "helicase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006281 "DNA repair" evidence=IMP
GO:0010332 "response to gamma radiation" evidence=IMP
DICTYBASE|DDB_G0281441 ercc6 "DNA excision repair protein 6" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070228-1 ercc6 "excision repair cross-complementing rodent repair deficiency, complementation group 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYA8 ERCC6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSK6 ERCC6L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|D3ZZZ1 Ercc6 "Protein Ercc6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
CGD|CAL0000882 orf19.607 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q03468 ERCC6 "DNA excision repair protein ERCC-6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ASPGD|ASPL0000068126 cshA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPCP25A2.02c rhp26 "SNF2 family helicase Rhp26" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.120.824
3rd Layer3.6.40.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1231
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 2e-95
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 4e-92
PLN031421033 PLN03142, PLN03142, Probable chromatin-remodeling 5e-80
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 2e-26
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 4e-21
smart0049082 smart00490, HELICc, helicase superfamily c-termina 2e-20
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 3e-20
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 2e-14
COG1061442 COG1061, SSL2, DNA or RNA helicases of superfamily 4e-08
PTZ001081388 PTZ00108, PTZ00108, DNA topoisomerase 2-like prote 6e-05
COG0513513 COG0513, SrmB, Superfamily II DNA and RNA helicase 1e-04
TIGR04095451 TIGR04095, dnd_restrict_1, DNA phosphorothioation 2e-04
pfam11496279 pfam11496, HDA2-3, Class II histone deacetylase co 0.002
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  325 bits (834), Expect = 2e-95
 Identities = 205/657 (31%), Positives = 303/657 (46%), Gaps = 77/657 (11%)

Query: 291 DPESLPKLDGPTRPFQRLKTPFRMPQSEESEVEKKKRSKRKKKRPLPDKKWRKRIAREDT 350
              +       T  ++ LK       S+  +++    S   ++    D   R R+     
Sbjct: 227 SEGTRKLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLR 286

Query: 351 RLEENEDSRDSLDMSSYEEEKQEDDEDSDN-NEPPFVTLEGGLKIPESIFNNLFDYQKVG 409
             + ++     +  +     +   DE  +   E            P  +   L  YQ  G
Sbjct: 287 LADLSQILEKFVRETLKLSARDLKDELKELLAELRLSEDLLNAPEPVDLSAELRPYQLEG 346

Query: 410 VQWLWE-LHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN--MYKPSIVVCPVTLLRQWK 466
           V WL E L     GGI+ D+MGLGKT+Q ++ L +L  S      P+++V P +LL  WK
Sbjct: 347 VNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWK 406

Query: 467 REAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDL 526
           RE EK+ P   + L++   +     KKR    D                           
Sbjct: 407 REFEKFAPDLRLVLVYHG-EKSELDKKREALRD--------------------------- 438

Query: 527 LINRVLRSESGLLITTYEQLRLLG---EKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQL 583
           L+   L     ++ITTYE LR        L  +EW   VLDE HRI+N  +      + L
Sbjct: 439 LLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFL 498

Query: 584 QTVHRIIMTGAPIQNKLSELWSLFD-FVFPGKLGV-LPVFEAEFAVPITVGGYANASPLQ 641
           + ++R+ +TG P++N+L ELWSL   F+ PG LG    +F   F  PI           +
Sbjct: 499 KALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEAR 558

Query: 642 VSTAYRCAVVLRDLIMPYLLRRMKAD--VNAQLPKKTEHVLFCSLTEEQRAVYRAFLASS 699
                     LR L+ P++LRR K D  V  +LP K E VL C L+EEQR +Y A L  +
Sbjct: 559 ELGIEL----LRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGA 614

Query: 700 EVEQ---------------ILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPER 744
           E  Q               I D   N L  +  +R+ICNHP L++              R
Sbjct: 615 EKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLR 674

Query: 745 SE----------------KMKVVAQVLK-VWKDQGH--RVLLFAQTQQMLDILESFLIAS 785
            +                K++ + ++L     ++GH  +VL+F+Q   +LD+LE +L A 
Sbjct: 675 EDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKAL 734

Query: 786 GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNP 845
           G +Y R+DG TP K+R  LID +N   +  +F+L+ K GGLG NLTGA+ VI+FDP WNP
Sbjct: 735 GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNP 794

Query: 846 STDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRF 902
           + ++QA +RA RIGQK+ V VYRLITRGTIEEK+   Q  K  L + ++    ++  
Sbjct: 795 AVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKEL 851

Length = 866
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234468 TIGR04095, dnd_restrict_1, DNA phosphorothioation system restriction enzyme Back     alignment and domain information
>gnl|CDD|221124 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 2 and 3 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1231
KOG0387923 consensus Transcription-coupled repair protein CSB 100.0
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 100.0
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 100.0
KOG10151567 consensus Transcription regulator XNP/ATRX, DEAD-b 100.0
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 100.0
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 100.0
PLN031421033 Probable chromatin-remodeling complex ATPase chain 100.0
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 100.0
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 100.0
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 100.0
KOG1002791 consensus Nucleotide excision repair protein RAD16 100.0
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 100.0
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 100.0
KOG4439901 consensus RNA polymerase II transcription terminat 100.0
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 100.0
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 100.0
PRK04914956 ATP-dependent helicase HepA; Validated 100.0
KOG1001674 consensus Helicase-like transcription factor HLTF/ 100.0
KOG0383696 consensus Predicted helicase [General function pre 100.0
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 100.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 100.0
PRK13766773 Hef nuclease; Provisional 100.0
KOG0298 1394 consensus DEAD box-containing helicase-like transc 100.0
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.96
PHA02558501 uvsW UvsW helicase; Provisional 99.96
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.96
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 99.95
PTZ00110545 helicase; Provisional 99.95
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.94
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.94
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.94
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 99.93
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.93
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 99.93
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.93
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.93
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 99.93
KOG0354746 consensus DEAD-box like helicase [General function 99.93
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.92
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.91
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 99.91
KOG1123776 consensus RNA polymerase II transcription initiati 99.91
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.91
PTZ00424401 helicase 45; Provisional 99.91
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.89
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 99.89
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 99.88
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.88
PRK13767 876 ATP-dependent helicase; Provisional 99.88
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.87
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.87
PRK106891147 transcription-repair coupling factor; Provisional 99.87
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 99.86
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 99.85
KOG0343758 consensus RNA Helicase [RNA processing and modific 99.85
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 99.85
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 99.84
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.84
PRK02362737 ski2-like helicase; Provisional 99.84
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.83
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 99.83
KOG0347731 consensus RNA helicase [RNA processing and modific 99.82
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 99.82
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.81
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 99.81
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.81
PRK01172674 ski2-like helicase; Provisional 99.81
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.81
PRK00254720 ski2-like helicase; Provisional 99.8
KOG4284 980 consensus DEAD box protein [Transcription] 99.78
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.77
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.77
PRK09401 1176 reverse gyrase; Reviewed 99.76
PHA02653675 RNA helicase NPH-II; Provisional 99.76
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.76
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.75
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 99.75
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 99.75
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 99.75
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.74
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.73
COG1201814 Lhr Lhr-like helicases [General function predictio 99.73
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.72
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.71
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 99.71
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 99.71
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.7
KOG0334997 consensus RNA helicase [RNA processing and modific 99.69
COG4096875 HsdR Type I site-specific restriction-modification 99.68
COG1205851 Distinct helicase family with a unique C-terminal 99.67
PRK05580679 primosome assembly protein PriA; Validated 99.67
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.67
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.65
KOG0346569 consensus RNA helicase [RNA processing and modific 99.64
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 99.63
PRK14701 1638 reverse gyrase; Provisional 99.63
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.63
COG1204766 Superfamily II helicase [General function predicti 99.62
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 99.61
COG4889 1518 Predicted helicase [General function prediction on 99.61
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 99.6
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.59
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.58
COG1202830 Superfamily II helicase, archaea-specific [General 99.57
PRK09694878 helicase Cas3; Provisional 99.55
smart00487201 DEXDc DEAD-like helicases superfamily. 99.55
KOG0327397 consensus Translation initiation factor 4F, helica 99.54
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.53
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.53
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.53
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.5
PRK13107908 preprotein translocase subunit SecA; Reviewed 99.5
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.49
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.48
PRK05298652 excinuclease ABC subunit B; Provisional 99.47
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.41
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.38
smart0049082 HELICc helicase superfamily c-terminal domain. 99.37
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.36
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 99.33
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 99.31
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.28
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 99.27
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 99.26
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.25
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.24
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.19
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 99.17
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.15
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.11
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 99.05
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 99.04
COG0556663 UvrB Helicase subunit of the DNA excision repair c 98.98
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 98.97
PRK12903925 secA preprotein translocase subunit SecA; Reviewed 98.96
KOG0353695 consensus ATP-dependent DNA helicase [General func 98.96
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 98.95
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 98.93
PF11496297 HDA2-3: Class II histone deacetylase complex subun 98.93
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 98.72
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 98.72
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 98.69
CHL00122870 secA preprotein translocase subunit SecA; Validate 98.68
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 98.67
COG1198730 PriA Primosomal protein N' (replication factor Y) 98.63
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 98.63
KOG1513 1300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 98.62
PRK12902939 secA preprotein translocase subunit SecA; Reviewed 98.6
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 98.55
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 98.55
PRK129011112 secA preprotein translocase subunit SecA; Reviewed 98.52
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 98.44
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 98.39
COG0610962 Type I site-specific restriction-modification syst 98.38
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 98.36
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 98.33
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 98.24
COG1643845 HrpA HrpA-like helicases [DNA replication, recombi 98.22
PF02399824 Herpes_ori_bp: Origin of replication binding prote 98.21
KOG0920924 consensus ATP-dependent RNA helicase A [RNA proces 98.2
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 98.07
PRK15483 986 type III restriction-modification system StyLTI en 98.04
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 98.0
KOG09491330 consensus Predicted helicase, DEAD-box superfamily 97.99
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 97.96
smart00488289 DEXDc2 DEAD-like helicases superfamily. 97.96
smart00489289 DEXDc3 DEAD-like helicases superfamily. 97.96
KOG0926 1172 consensus DEAH-box RNA helicase [RNA processing an 97.91
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 97.85
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 97.83
PF13871278 Helicase_C_4: Helicase_C-like 97.7
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 97.64
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 97.5
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 97.46
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 96.83
PRK10536262 hypothetical protein; Provisional 96.81
PRK14873665 primosome assembly protein PriA; Provisional 96.65
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 96.54
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 96.36
KOG1803649 consensus DNA helicase [Replication, recombination 96.28
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 96.18
COG3587985 Restriction endonuclease [Defense mechanisms] 96.16
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 96.11
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 96.05
KOG18051100 consensus DNA replication helicase [Replication, r 95.95
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 95.81
KOG41501034 consensus Predicted ATP-dependent RNA helicase [RN 95.74
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 95.7
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 95.68
TIGR00376637 DNA helicase, putative. The gene product may repre 95.48
KOG1132945 consensus Helicase of the DEAD superfamily [Replic 95.47
KOG1131755 consensus RNA polymerase II transcription initiati 95.29
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 95.28
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 94.83
PRK04296190 thymidine kinase; Provisional 94.7
PRK11773721 uvrD DNA-dependent helicase II; Provisional 94.56
PRK10875615 recD exonuclease V subunit alpha; Provisional 94.31
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 93.55
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 93.2
PRK10919672 ATP-dependent DNA helicase Rep; Provisional 92.95
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 92.93
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 92.16
TIGR01073726 pcrA ATP-dependent DNA helicase PcrA. Designed to 92.08
PHA02533534 17 large terminase protein; Provisional 92.08
smart00382148 AAA ATPases associated with a variety of cellular 92.05
PF02270275 TFIIF_beta: Transcription initiation factor IIF, b 91.89
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 91.71
PRK12402337 replication factor C small subunit 2; Reviewed 91.69
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 91.15
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 91.06
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 90.56
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 90.43
PLN03025319 replication factor C subunit; Provisional 88.93
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 88.29
PRK06526254 transposase; Provisional 87.99
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 87.84
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 87.37
PF1324576 AAA_19: Part of AAA domain 87.27
PRK09112351 DNA polymerase III subunit delta'; Validated 87.14
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 86.88
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 86.63
PHA03368738 DNA packaging terminase subunit 1; Provisional 85.9
PF05793527 TFIIF_alpha: Transcription initiation factor IIF, 85.76
CHL00181287 cbbX CbbX; Provisional 85.19
PRK14949944 DNA polymerase III subunits gamma and tau; Provisi 84.95
TIGR02928365 orc1/cdc6 family replication initiation protein. M 84.93
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 84.83
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 84.83
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 84.66
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 83.83
TIGR00362405 DnaA chromosomal replication initiator protein Dna 83.58
PRK14087450 dnaA chromosomal replication initiation protein; P 83.01
PRK00149450 dnaA chromosomal replication initiation protein; R 82.19
smart00491142 HELICc2 helicase superfamily c-terminal domain. 81.9
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 81.81
PF06733174 DEAD_2: DEAD_2; InterPro: IPR010614 This represent 81.8
COG0464494 SpoVK ATPases of the AAA+ class [Posttranslational 81.47
PRK08727233 hypothetical protein; Validated 81.38
PRK14974336 cell division protein FtsY; Provisional 81.25
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 80.42
PRK08769319 DNA polymerase III subunit delta'; Validated 80.36
PRK13889988 conjugal transfer relaxase TraA; Provisional 80.17
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 80.01
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-146  Score=1291.44  Aligned_cols=832  Identities=49%  Similarity=0.816  Sum_probs=673.8

Q ss_pred             ccchhHHHHHHhhhhcCCcccccccCCCCCccccccceeecCCCcchhHhhhhhccccchhhhhHHHHhccCCCcc-cch
Q 044798          159 GIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTVSVDDDFDFDSALDAASAGFVETKRDELVRKGILTPFH-KLK  237 (1231)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  237 (1231)
                      ...|..++..++|..+   ..+++++++-....++.+++||. |.|+++.-.+|+.+++|||+++|+|.|.+|||+ ++-
T Consensus         4 ~~~~~n~~k~~~k~~~---~~~~~I~~~~dd~~~kl~~~sl~-~~d~~a~~~g~~~~~~e~~~Edl~~~g~~~~~~s~~s   79 (923)
T KOG0387|consen    4 ISVPENLLKQTEKMQS---DDLQEILGIEDDITSKLKEASLR-DKDSSASDFGASMSVLETEKEDLKRTGSLTPFESRLS   79 (923)
T ss_pred             ccCccchhhhhhhhcC---ccHHHhhcchhhhhhhhhhhhhh-ccCCCccccccccccchhhHHHHHhcCCcCccccccc
Confidence            4566677777777666   24778999988888999999999 999999999999999999999999999999999 999


Q ss_pred             hhhh-hhcCCCCCCCCCCchhhhhccCCCCcchHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCCcccccCCCCCCCC
Q 044798          238 GFER-CIQQPGPSNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRPFQRLKTPFRMPQ  316 (1231)
Q Consensus       238 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  316 (1231)
                      ||++ .+|.|.+|+.++..+++.+.   ..+..|.+....+          -.+|...+|+......-....   .+...
T Consensus        80 g~~~~~~~~~~~s~~~~~~e~d~e~---e~~e~ie~~~~e~----------~~~D~~~~~k~~~d~~~ie~d---e~~~~  143 (923)
T KOG0387|consen   80 GFQKLPSQKPDKSSSRELLEEDDER---ELEEKIEKLISET----------SNLDFGISPKDEKDQEEIESD---EKIDD  143 (923)
T ss_pred             cceeccccCCcccccccccccccch---hhHHHHhhhhccc----------cccccccCcccccchhhhhhh---ccccc
Confidence            9999 99999988888877665543   3445555555422          246666666665554211111   00000


Q ss_pred             CchhhHHHhhhhhcccCCCCCchHHHHHHHHhhhhhhccccccccccCCchhhhhccCCCCCCCCCCCcccccCCcccCh
Q 044798          317 SEESEVEKKKRSKRKKKRPLPDKKWRKRIAREDTRLEENEDSRDSLDMSSYEEEKQEDDEDSDNNEPPFVTLEGGLKIPE  396 (1231)
Q Consensus       317 ~~~~~~~kkkk~kkkkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~e~~~~d~ed~~~~~~~~~~~~~~~~iP~  396 (1231)
                      .           -+-..+.-..+.++.++.+........          .  +...-+.+..+..+.....++++|.||.
T Consensus       144 ~-----------~~~~~Dd~d~~~~~~r~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~vPg  200 (923)
T KOG0387|consen  144 V-----------EDSAIDDGDEKVYRARLDKWVKYRKLS----------C--ESKGLDEELEDHSEISGKKLEGGFKVPG  200 (923)
T ss_pred             c-----------cccccccCchHHHHHHHHHhhhcccch----------h--hhcCcccccccccccccccccccccccH
Confidence            0           011233333444444433322221100          0  0000012223334445566788999999


Q ss_pred             hhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc-CCCCcEEEEeCCcchHHHHHHHHHHcCC
Q 044798          397 SIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS-NMYKPSIVVCPVTLLRQWKREAEKWYPS  475 (1231)
Q Consensus       397 ~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s-~~~kpvLIV~P~sLl~QW~~E~~kw~p~  475 (1231)
                      .|+..|||||++||+|||++|+++.|||||||||||||||+|+||++++++ ...+|+|||||+++|+||++||++|||+
T Consensus       201 ~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~w~p~  280 (923)
T KOG0387|consen  201 FIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQTWWPP  280 (923)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHHhCcc
Confidence            999999999999999999999999999999999999999999999999998 5679999999999999999999999999


Q ss_pred             CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhc
Q 044798          476 FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLD  555 (1231)
Q Consensus       476 lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~  555 (1231)
                      ++|.++|+++.+...                         ........|+.++.+......+|+||||+.++...+.+..
T Consensus       281 ~rv~ilh~t~s~~r~-------------------------~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~  335 (923)
T KOG0387|consen  281 FRVFILHGTGSGARY-------------------------DASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLG  335 (923)
T ss_pred             eEEEEEecCCccccc-------------------------ccchhhhhhhhhheeeecccCcEEEEehhhhcccCccccc
Confidence            999999998864321                         1223344555556666667789999999999999999999


Q ss_pred             CCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCC
Q 044798          556 VEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYA  635 (1231)
Q Consensus       556 ~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~  635 (1231)
                      +.|+||||||||+|||++|+++.+|++|++.+||+||||||||||.|||+||+|++||.||+++.|.++|..||..|+|+
T Consensus       336 ~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~Ggya  415 (923)
T KOG0387|consen  336 ILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYA  415 (923)
T ss_pred             ccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhh-cCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHH
Q 044798          636 NASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNA-QLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYG  714 (1231)
Q Consensus       636 ~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~-dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~  714 (1231)
                      |+++.++.++|+|++.|+.+|+||||||+|+||.. .||.|.++|+||.||+.|+.+|+.|+.+.++..++++..+.|++
T Consensus       416 NAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~G  495 (923)
T KOG0387|consen  416 NASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSG  495 (923)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceec
Confidence            99999999999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCChhhhhhh--hhcCCCCC-CCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHH-HcCCcEE
Q 044798          715 IDVMRKICNHPDLLERE--QSCQIPDY-GNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLI-ASGYEYR  790 (1231)
Q Consensus       715 i~~LRkicnHPdLl~~~--~~~~~~d~-~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~-~~Gi~~~  790 (1231)
                      |..||+|||||+|+.+.  .....+++ ++++.|+||++|..+|..|+.+|+|||+|+|+++|||+|+.+|. ..||.|+
T Consensus       496 i~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysyl  575 (923)
T KOG0387|consen  496 IDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYL  575 (923)
T ss_pred             hHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEE
Confidence            99999999999999887  66677888 99999999999999999999999999999999999999999999 6899999


Q ss_pred             EEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEE
Q 044798          791 RMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLI  870 (1231)
Q Consensus       791 rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLi  870 (1231)
                      ||||+|+...|+.+|++||++..++|||+||+|||+|||||+|||||||||+|||+++.||.+|+|||||+|+|.|||||
T Consensus       576 RmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~  655 (923)
T KOG0387|consen  576 RMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLM  655 (923)
T ss_pred             EecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHHHHhcCcchhcccCHhHHHHhhccCCCCC-CCCcchhhHhhhhcccccccCcccchhhHH
Q 044798          871 TRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGN-GGSTETSNIFSQLSEDVNVVGDQKDKEDKQ  949 (1231)
Q Consensus       871 t~gTIEEkIy~rQ~~K~~L~n~vl~d~~~~r~f~~~dl~dLF~l~~~~~-~~~~et~~~f~~~~~~~~~~~~~~~~~~~~  949 (1231)
                      +.|||||+||++|++|++|+|+++.+|+++|||...+|+|||+|.+.+. +..+|++++|....+.++.......+....
T Consensus       656 t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q~RfF~~~dl~dLFsl~~~G~~~~~te~~~~~~~~~~~~~lk~~~~~~~~~~  735 (923)
T KOG0387|consen  656 TAGTIEEKIYHRQIFKQFLTNRILKNPEQRRFFKGNDLHDLFSLKDFGDDGESTETSSKEVHRNEKVNLKRNSSIDFEEK  735 (923)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHhcCHHHhhhcccccHHHHhCCCCCCcCcchhhhhhhhhhhhHHHHHhhcccccchhh
Confidence            9999999999999999999999999999999999999999999988643 678999999988754444321111110000


Q ss_pred             HHHhhhhcCCCCcccccccccccccccccCcccccCC-CCCCchhHHHHHHhhhhcCcccccchhhhhccCchhhHHHHH
Q 044798          950 KHKKAASANADDAVGDKENNLEIGSSRRKGKEKVDNI-GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEE 1028 (1231)
Q Consensus       950 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~s~~~hd~i~~~~~~~~~~~~~ 1028 (1231)
                      .  ....-. ..+        +..++...+....+.. .......+-||.++++.      +-|+..   ......+++.
T Consensus       736 ~--~l~~l~-~~~--------~~~~~~~~~~~~~e~~~~~~~e~~~~ilg~~~~~------vv~~~~---~~~~~~~~~~  795 (923)
T KOG0387|consen  736 E--DLLALS-KHS--------ELSSSVSNGSSEEEVEEAKDREMIKPILGSLSDS------VVNNHR---NEEEKNIIET  795 (923)
T ss_pred             h--hhhhhc-ccc--------ccccccCchHHHHHHHHHhhhhhhhhhhccchhh------hHHhhh---hhhhhccccc
Confidence            0  000000 000        0000000111110000 00111223355555432      112111   1234668899


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HhcCCCCCCccCCCCCCCC---CCCcccccCCCc
Q 044798         1029 QASQVAQRAAEALRQSRML-RSRDDISVPTWTGKSGTAG---APSSVRKKFGST 1078 (1231)
Q Consensus      1029 ea~~va~~a~~~l~~s~~~-~~~~~~~~ptwtg~~g~ag---~~~~~~~~~~~~ 1078 (1231)
                      ++..++++|..+++.++.. .+....++|||||.+|.||   +|...+.+++.+
T Consensus       796 ~~~~~~~~~n~~~s~dr~~~~~~~~s~~~~~t~~~g~~g~~~r~~~~k~~~~~~  849 (923)
T KOG0387|consen  796 EASTSVKRANDALSDDRKLSKRKGCSGEETWTDSSGEAGKVERPSDYKMKIEST  849 (923)
T ss_pred             cccchhhhhccccccchhhhhhcccccCcchhhccccCCCcccCchhcchhHHH
Confidence            9999999999999999976 4666788999999999999   787666665544

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>PRK11773 uvrD DNA-dependent helicase II; Provisional Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PF02270 TFIIF_beta: Transcription initiation factor IIF, beta subunit; InterPro: IPR003196 Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PHA03368 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>PF05793 TFIIF_alpha: Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); InterPro: IPR008851 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II [] Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1231
1z3i_X644 Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA 8e-70
3mwy_W800 Crystal Structure Of The Chromodomain-atpase Portio 4e-69
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 2e-62
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 6e-59
1z5z_A271 Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal 3e-26
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 Back     alignment and structure 
Iteration: 1

 Score =  262 bits (670), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 178/545 (32%), Positives = 273/545 (50%), Gaps = 64/545 (11%)
Query: 405 YQKVGVQWLWELHCQR-----AGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI---- 454
           +Q+ GV++LW+    R      G I+ DEMGLGKT+Q ++ +  L   S   KP I    
Sbjct: 59  HQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVI 118
Query: 455 VVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEG 514
           VV P +L+R W  E  KW               LG    R +    D   +   DS    
Sbjct: 119 VVSPSSLVRNWYNEVGKW---------------LG---GRVQPVAIDGGSKDEIDSKLVN 160
Query: 515 NLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNA 574
            +S +            +R  + +LI +YE  RL  E L   + G  + DEGHR++N + 
Sbjct: 161 FISQQG-----------MRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDN 209
Query: 575 EISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGY 634
           +  L    +    R++++G PIQN L E +SL  FV  G LG    F+  F +PI  G  
Sbjct: 210 QTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRD 269
Query: 635 ANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRA 694
           A+AS    +   +    L  ++   L+RR    ++  LP K E V+ C+LT  Q+ +Y+ 
Sbjct: 270 ADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKL 329
Query: 695 FLASSE-VEQILDGSRNSLYGIDVM--RKICNHPDLLEREQSCQIPDYG----------- 740
           FL  ++ VE +  G  +      +   +K+CNHP L+   + C   + G           
Sbjct: 330 FLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIY--EKCLTGEEGFDGALDLFPQN 387
Query: 741 ------NPERSEKMKVVAQVLKVWKDQ-GHRVLLFAQTQQMLDILESFLIASGYEYRRMD 793
                  P+ S KM V+  +L + +     +V+L +   Q LD+ E       Y Y R+D
Sbjct: 388 YSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLD 447
Query: 794 GLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQAR 852
           G   +K+R  +++ +NN SS  FIF+L++K GG G NL GANR+++FDPDWNP+ D QA 
Sbjct: 448 GTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAM 507
Query: 853 ERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDL 911
            R WR GQK+   +YRL++ GTIEEK+  RQ +K  L++ ++   Q   R F    +++L
Sbjct: 508 ARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELREL 567
Query: 912 FTLND 916
           F+LN+
Sbjct: 568 FSLNE 572
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1231
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 0.0
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 1e-135
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 1e-131
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 7e-69
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 1e-63
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 2e-53
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 6e-13
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 7e-06
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 4e-05
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 6e-05
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 7e-04
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
 Score =  691 bits (1785), Expect = 0.0
 Identities = 179/624 (28%), Positives = 291/624 (46%), Gaps = 69/624 (11%)

Query: 355 NEDSRDSLDMSSYEEEKQEDDEDSDNNEPPFVTLEGGLKIPESIFNNLFDYQKVGVQWLW 414
           +     +L +         D   +D  + P       + +   +   L  +Q+ GV++LW
Sbjct: 14  DPFEDGALVLYEPPAISAHDLIKADKEKLP-----VHVVVDPVLSKVLRPHQREGVKFLW 68

Query: 415 ELHC-----QRAGGIIGDEMGLGKTIQVLSFLGALHFSN-----MYKPSIVVCPVTLLRQ 464
           +           G I+ DEMGLGKT+Q ++ +  L   +          IVV P +L+R 
Sbjct: 69  DCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRN 128

Query: 465 WKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKW 524
           W  E  KW       +  D                              G+    + K  
Sbjct: 129 WYNEVGKWLGGRVQPVAIDG-----------------------------GSKDEIDSKLV 159

Query: 525 DLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQ 584
           + +  + +R  + +LI +YE  RL  E L   + G  + DEGHR++N + +  L    + 
Sbjct: 160 NFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMN 219

Query: 585 TVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVST 644
              R++++G PIQN L E +SL  FV  G LG    F+  F +PI  G  A+AS    + 
Sbjct: 220 AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAA 279

Query: 645 AYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQI 704
             +    L  ++   L+RR    ++  LP K E V+ C+LT  Q+ +Y+ FL  ++  + 
Sbjct: 280 GEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVES 339

Query: 705 LDGSRNS---LYGIDVMRKICNHPDLLEREQSCQIPDYGN---------------PERSE 746
           L   + S   L  I  ++K+CNHP L+  +       +                 P+ S 
Sbjct: 340 LQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSG 399

Query: 747 KMKVVAQVLKVWKDQ-GHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALI 805
           KM V+  +L + +     +V+L +   Q LD+ E       Y Y R+DG   +K+R  ++
Sbjct: 400 KMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIV 459

Query: 806 DEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
           + +NN SS  FIF+L++K GG G NL GANR+++FDPDWNP+ D QA  R WR GQK+  
Sbjct: 460 ERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTC 519

Query: 865 TVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLNDDGNGGST 923
            +YRL++ GTIEEK+  RQ +K  L++ ++   Q   R F    +++LF+LN+      +
Sbjct: 520 YIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEKTL---S 576

Query: 924 ETSNIFSQLSEDVNVVGDQKDKED 947
           +T + F +    VN    +   +D
Sbjct: 577 DTHDRF-RCRRCVNGRQVRPPPDD 599
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1231
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 100.0
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 100.0
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 100.0
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 100.0
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 100.0
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 100.0
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 100.0
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 100.0
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 100.0
4gl2_A699 Interferon-induced helicase C domain-containing P; 100.0
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 100.0
3h1t_A590 Type I site-specific restriction-modification syst 99.98
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 99.97
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 99.97
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 99.97
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 99.97
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 99.97
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 99.97
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 99.97
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 99.96
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 99.96
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 99.96
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 99.96
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 99.96
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 99.95
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 99.95
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 99.94
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 99.94
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 99.94
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.93
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 99.93
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 99.92
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 99.92
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 99.92
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 99.91
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 99.89
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 99.89
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 99.89
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 99.87
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 99.87
2w00_A1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.86
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 99.82
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 99.8
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 99.76
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 99.75
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 99.75
1nkt_A922 Preprotein translocase SECA 1 subunit; preprotein 99.73
1yks_A440 Genome polyprotein [contains: flavivirin protease 99.73
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 99.73
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.73
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.72
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 99.72
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.71
2xau_A773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 99.7
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 99.7
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.69
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 99.68
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.68
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 99.68
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 99.67
4f92_B1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.66
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 99.66
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.65
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.64
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.64
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.43
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.62
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 99.62
3jux_A822 Protein translocase subunit SECA; protein transloc 99.6
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 99.59
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.59
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 99.58
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 99.57
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 99.57
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 99.56
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.55
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.55
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 99.54
3bor_A237 Human initiation factor 4A-II; translation initiat 99.54
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 99.53
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 99.53
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 99.46
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 99.43
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 99.4
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 99.36
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.33
2ipc_A 997 Preprotein translocase SECA subunit; nucleotide bi 99.24
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 99.11
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 98.65
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 98.49
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 97.88
3lfu_A647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 96.79
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 96.48
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 96.45
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 96.36
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 96.33
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 96.28
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 96.2
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 95.98
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 95.75
1bby_A69 RAP30; average structure transcription regulation, 95.69
3cpe_A592 Terminase, DNA packaging protein GP17; large termi 95.22
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 95.18
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 94.15
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 93.23
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 92.62
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 92.6
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 91.02
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 90.26
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 89.73
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 89.27
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 87.8
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 87.78
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 87.2
1nha_A82 TFIIF-alpha, transcription initiation factor IIF, 86.88
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 86.37
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 85.65
2chg_A226 Replication factor C small subunit; DNA-binding pr 85.13
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 84.17
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 83.88
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 83.47
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 83.33
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 82.94
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 82.74
1i27_A73 Transcription factor IIF; general transcription fa 82.36
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 82.09
3bos_A242 Putative DNA replication factor; P-loop containing 81.46
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 80.64
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 80.54
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 80.48
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 80.21
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
Probab=100.00  E-value=4.1e-81  Score=777.81  Aligned_cols=501  Identities=34%  Similarity=0.577  Sum_probs=433.3

Q ss_pred             cccChhhhhhchHHHHHHHHHHHHHH-----cCCCcEEEEeCCCchHHHHHHHHHHHHhhcC-----CCCcEEEEeCCcc
Q 044798          392 LKIPESIFNNLFDYQKVGVQWLWELH-----CQRAGGIIGDEMGLGKTIQVLSFLGALHFSN-----MYKPSIVVCPVTL  461 (1231)
Q Consensus       392 ~~iP~~i~~~L~pyQkegV~wL~el~-----~~~~GgILADEMGLGKTIqaIA~L~~L~~s~-----~~kpvLIV~P~sL  461 (1231)
                      +.+|+.+...|+|||++||.||+.+.     ..+.||||||+||+|||+|+|+++..+...+     ..+++|||||.++
T Consensus        46 ~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sl  125 (644)
T 1z3i_X           46 VVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSL  125 (644)
T ss_dssp             EECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHH
T ss_pred             EeeChhhhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHH
Confidence            34678899999999999999999876     3567899999999999999999999887654     2467999999999


Q ss_pred             hHHHHHHHHHHcCC-CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhh-----cCC
Q 044798          462 LRQWKREAEKWYPS-FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVL-----RSE  535 (1231)
Q Consensus       462 l~QW~~E~~kw~p~-lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~-----~~~  535 (1231)
                      +.||.+||.+|+|. +.++.++++.......                                   .+....     ...
T Consensus       126 l~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~-----------------------------------~~~~~~~~~~~~~~  170 (644)
T 1z3i_X          126 VRNWYNEVGKWLGGRVQPVAIDGGSKDEIDS-----------------------------------KLVNFISQQGMRIP  170 (644)
T ss_dssp             HHHHHHHHHHHHGGGCCEEEECSSCHHHHHH-----------------------------------HHHHHHCCCSSCCS
T ss_pred             HHHHHHHHHHHcCCCeeEEEEeCCCHHHHHH-----------------------------------HHHHHHHhcCCCCC
Confidence            99999999999975 5566665433211000                                   011111     124


Q ss_pred             CCEEEeCHHHHHHHHhhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCC
Q 044798          536 SGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKL  615 (1231)
Q Consensus       536 ~~VvItTYe~Lr~~~~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~l  615 (1231)
                      ++|+|+||++++.....+....|++|||||||+|||+.++.++++..+.+.+||+|||||+||++.|||+|++|+.|+.+
T Consensus       171 ~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l  250 (644)
T 1z3i_X          171 TPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGIL  250 (644)
T ss_dssp             CCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHH
T ss_pred             CcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcC
Confidence            68999999999999888988999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHH
Q 044798          616 GVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAF  695 (1231)
Q Consensus       616 g~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~  695 (1231)
                      ++...|...|..||..+...+++......+..+...|+.++.||++||++.++..+||++.+++++|+|++.|+.+|+.+
T Consensus       251 ~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~  330 (644)
T 1z3i_X          251 GTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLF  330 (644)
T ss_dssp             CCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHH
T ss_pred             CCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHH
Confidence            99999999999999999999999888888999999999999999999999999999999999999999999999999998


Q ss_pred             HhhHHHHHHhh---cCcchhHHHHHHHHHhCChhhhhhhhhcCC----------C-----CCCCCCcchHHHHHHHHHHH
Q 044798          696 LASSEVEQILD---GSRNSLYGIDVMRKICNHPDLLEREQSCQI----------P-----DYGNPERSEKMKVVAQVLKV  757 (1231)
Q Consensus       696 l~s~~~~~il~---~~~~~l~~i~~LRkicnHPdLl~~~~~~~~----------~-----d~~~~~~S~Kl~~L~eLLk~  757 (1231)
                      +........+.   .....+..+..||++||||.++........          +     ....+..|+|+.+|..+|..
T Consensus       331 ~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~  410 (644)
T 1z3i_X          331 LKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAM  410 (644)
T ss_dssp             HHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHH
Confidence            76542211111   123457778999999999999864321111          0     11223569999999999999


Q ss_pred             HHh-cCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCC-ceEEEEeccccccccCCCCCCE
Q 044798          758 WKD-QGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSD-VFIFILTTKVGGLGTNLTGANR  835 (1231)
Q Consensus       758 ~~~-~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~-i~VfLlSTkvGg~GLNLt~Anr  835 (1231)
                      +.. .++|+||||+|+.++++|+.+|...|+.|++++|+++..+|+.++++|++++. .+|||+||++||+||||++|++
T Consensus       411 ~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~  490 (644)
T 1z3i_X          411 TRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANR  490 (644)
T ss_dssp             HHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEE
T ss_pred             HhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCE
Confidence            875 58999999999999999999999999999999999999999999999999754 4699999999999999999999


Q ss_pred             EEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCcc-hhcccCHhHHHHhhcc
Q 044798          836 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARNMKDLFTL  914 (1231)
Q Consensus       836 VIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~d~~-~~r~f~~~dl~dLF~l  914 (1231)
                      ||+|||||||+.+.||+||+||+||+++|+||+|++.||+||+||++|..|+.|++.++++.. ..+.|+.++|.+||++
T Consensus       491 Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~Lf~~  570 (644)
T 1z3i_X          491 LVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSL  570 (644)
T ss_dssp             EEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHHTCC
T ss_pred             EEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999999999999998754 4688999999999999


Q ss_pred             CCCCCCCCcchhhHhh
Q 044798          915 NDDGNGGSTETSNIFS  930 (1231)
Q Consensus       915 ~~~~~~~~~et~~~f~  930 (1231)
                      .++   ...+|++.+.
T Consensus       571 ~~~---~~~~t~~~~~  583 (644)
T 1z3i_X          571 NEK---TLSDTHDRFR  583 (644)
T ss_dssp             CSS---CSCHHHHHHT
T ss_pred             CCC---ccchhhhhhh
Confidence            875   3567777654
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A* Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1231
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 2e-46
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 5e-41
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 1e-38
d1z5za1244 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h 4e-37
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 4e-21
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 6e-18
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 3e-05
d1fuka_162 c.37.1.19 (A:) Initiation factor 4a {Baker's yeast 1e-04
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

 Score =  168 bits (426), Expect = 2e-46
 Identities = 95/274 (34%), Positives = 152/274 (55%), Gaps = 22/274 (8%)

Query: 666 ADVNA-QLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSR---NSLYGIDVMRKI 721
           +D+ +  LP K E V+ C+LT  Q+ +Y+ FL  ++  + L   +   +SL  I  ++K+
Sbjct: 2   SDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKL 61

Query: 722 CNHPDLLEREQSCQIPDY---------------GNPERSEKMKVVAQVLKVWK-DQGHRV 765
           CNHP L+  +       +                 P+ S KM V+  +L + +     +V
Sbjct: 62  CNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKV 121

Query: 766 LLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSD-VFIFILTTKVG 824
           +L +   Q LD+ E       Y Y R+DG   +K+R  +++ +NN S   FIF+L++K G
Sbjct: 122 VLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAG 181

Query: 825 GLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQI 884
           G G NL GANR+++FDPDWNP+ D QA  R WR GQK+   +YRL++ GTIEEK+  RQ 
Sbjct: 182 GCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQA 241

Query: 885 YKHFLTNKILKNPQQ-RRFFKARNMKDLFTLNDD 917
           +K  L++ ++   Q   R F    +++LF+LN+ 
Sbjct: 242 HKKALSSCVVDEEQDVERHFSLGELRELFSLNEK 275
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1231
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.86
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.8
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.78
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.77
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.77
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.75
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.73
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.71
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.69
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.68
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.67
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.64
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.62
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.56
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.52
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.47
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.35
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.28
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.22
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.22
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.22
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.21
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.2
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.2
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.16
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.15
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.13
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 99.08
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.07
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.01
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 98.98
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 98.98
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 98.98
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 98.89
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 98.86
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 98.77
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 98.57
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 98.15
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.14
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 97.3
d2bbya_69 DNA-binding domain from rap30 {Human (Homo sapiens 96.0
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 95.23
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 95.13
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 93.9
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 91.8
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 90.84
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 90.29
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 90.2
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 88.47
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 88.22
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 87.3
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 86.52
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 86.19
d2doaa191 RNA polymerase II elongation factor ELL {Human (Ho 83.77
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 81.38
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=1e-45  Score=424.21  Aligned_cols=260  Identities=37%  Similarity=0.658  Sum_probs=223.0

Q ss_pred             hhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHH-HHhhc--CcchhHHHHHHHHHhCChhhhhhhhhcCCC--------
Q 044798          669 NAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVE-QILDG--SRNSLYGIDVMRKICNHPDLLEREQSCQIP--------  737 (1231)
Q Consensus       669 ~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~-~il~~--~~~~l~~i~~LRkicnHPdLl~~~~~~~~~--------  737 (1231)
                      .+.||||.+++++|+||+.|+++|+.++...... ....+  ....|..+..||++||||.|+.........        
T Consensus         6 ~k~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~~~~~~~~~~~   85 (346)
T d1z3ix1           6 SKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDL   85 (346)
T ss_dssp             GGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGT
T ss_pred             hccCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHhCCHHHhhhhhccccccccchhhh
Confidence            4689999999999999999999999998653211 11111  234677789999999999998644221111        


Q ss_pred             -------CCCCCCcchHHHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh
Q 044798          738 -------DYGNPERSEKMKVVAQVLKVWK-DQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYN  809 (1231)
Q Consensus       738 -------d~~~~~~S~Kl~~L~eLLk~~~-~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn  809 (1231)
                             ....+..|+|+.+|.++|..++ ..|+||||||+|+.++++|+.+|...|+.|++++|+|+..+|+.+++.||
T Consensus        86 ~~~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~  165 (346)
T d1z3ix1          86 FPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFN  165 (346)
T ss_dssp             SCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHH
T ss_pred             ccccccccccccccCHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhh
Confidence                   1123456999999999999885 56899999999999999999999999999999999999999999999999


Q ss_pred             CCC-CceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHHHHHHHH
Q 044798          810 NSS-DVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHF  888 (1231)
Q Consensus       810 ~d~-~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~  888 (1231)
                      ++. ...|||++|++||+||||++|++||+|||+|||+.+.||+||+||+||+++|+||||++.|||||+||++|..|+.
T Consensus       166 ~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K~~  245 (346)
T d1z3ix1         166 NPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKA  245 (346)
T ss_dssp             STTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHH
T ss_pred             cccccceeeeecchhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            864 4579999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcc-hhcccCHhHHHHhhccCCCCCCCCcchhhHhhh
Q 044798          889 LTNKILKNPQ-QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQ  931 (1231)
Q Consensus       889 L~n~vl~d~~-~~r~f~~~dl~dLF~l~~~~~~~~~et~~~f~~  931 (1231)
                      +++.++++.. ..+.|+.++|.+||++.++   ..++|++.+.-
T Consensus       246 l~~~v~~~~~~~~~~~~~~~l~~lf~~~~~---~~~~t~~~~~~  286 (346)
T d1z3ix1         246 LSSCVVDEEQDVERHFSLGELRELFSLNEK---TLSDTHDRFRC  286 (346)
T ss_dssp             TSCCCCSCSSSCCCSSCHHHHHHHTCCCSS---CSCHHHHHHTC
T ss_pred             HHHHHhCCchhhhhcCCHHHHHHHhcCCCc---ccccchhhhcc
Confidence            9999998765 4688999999999999765   45777776643
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure